Query 043430
Match_columns 258
No_of_seqs 152 out of 456
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02291 phospho-2-dehydro-3-d 100.0 1.4E-87 3E-92 646.0 20.8 190 69-258 18-207 (474)
2 TIGR01358 DAHP_synth_II 3-deox 100.0 3.2E-87 7E-92 640.4 19.0 188 71-258 1-188 (443)
3 PF01474 DAHP_synth_2: Class-I 100.0 4.6E-87 9.9E-92 638.8 8.8 188 70-257 1-188 (439)
4 COG3200 AroG 3-deoxy-D-arabino 100.0 1.2E-83 2.5E-88 605.0 16.4 190 69-258 3-192 (445)
5 TIGR01309 L30P_arch 50S riboso 74.4 3.8 8.2E-05 35.5 3.5 109 80-205 27-146 (152)
6 PRK05722 glucose-6-phosphate 1 53.3 14 0.00031 37.4 3.6 66 114-202 247-313 (495)
7 PLN03033 2-dehydro-3-deoxyphos 49.3 27 0.00059 33.5 4.5 51 121-187 10-65 (290)
8 cd00468 HIT_like HIT family: H 47.7 50 0.0011 23.8 4.9 55 123-178 17-75 (86)
9 PRK06049 rpl30p 50S ribosomal 45.7 23 0.00051 30.7 3.2 109 79-205 28-148 (154)
10 TIGR00871 zwf glucose-6-phosph 40.2 46 0.00099 33.7 4.8 64 114-202 238-302 (482)
11 PRK12853 glucose-6-phosphate 1 39.4 32 0.00068 34.9 3.5 64 114-202 237-301 (482)
12 COG0537 Hit Diadenosine tetrap 36.7 59 0.0013 27.1 4.2 63 134-203 44-110 (138)
13 PF01230 HIT: HIT domain; Int 32.3 56 0.0012 24.7 3.2 54 125-179 27-84 (98)
14 PRK13397 3-deoxy-7-phosphohept 31.6 59 0.0013 30.3 3.7 28 154-187 31-58 (250)
15 TIGR01362 KDO8P_synth 3-deoxy- 30.4 1.2E+02 0.0026 28.7 5.6 48 127-187 2-51 (258)
16 PF06974 DUF1298: Protein of u 29.5 34 0.00073 28.6 1.7 39 192-231 112-150 (153)
17 PLN02333 glucose-6-phosphate 1 29.4 96 0.0021 32.6 5.2 61 114-201 353-414 (604)
18 smart00718 DM4_12 DM4/DM12 fam 29.3 78 0.0017 25.0 3.6 48 91-146 44-92 (95)
19 PRK13473 gamma-aminobutyraldeh 28.1 1.6E+02 0.0034 28.8 6.2 34 103-136 319-353 (475)
20 COG1342 Predicted DNA-binding 27.7 72 0.0016 26.3 3.2 29 107-135 65-94 (99)
21 PF01785 Closter_coat: Closter 27.3 2.2E+02 0.0048 24.9 6.4 106 103-235 9-115 (188)
22 PRK05198 2-dehydro-3-deoxyphos 26.7 1.7E+02 0.0037 27.8 5.9 47 125-187 8-59 (264)
23 PLN02640 glucose-6-phosphate 1 26.1 1.1E+02 0.0024 32.0 4.9 61 114-201 324-385 (573)
24 cd07149 ALDH_y4uC Uncharacteri 25.2 1.5E+02 0.0032 28.5 5.4 35 103-137 303-337 (453)
25 PRK12457 2-dehydro-3-deoxyphos 25.0 1.1E+02 0.0025 29.2 4.5 46 126-187 15-65 (281)
26 PF08203 RNA_polI_A14: Yeast R 24.9 45 0.00098 26.1 1.5 18 91-108 59-76 (76)
27 cd01828 sialate_O-acetylestera 24.4 3.2E+02 0.0069 21.9 6.5 54 114-174 40-95 (169)
28 cd07110 ALDH_F10_BADH Arabidop 23.9 2E+02 0.0043 27.9 6.0 35 103-137 302-336 (456)
29 PF06490 FleQ: Flagellar regul 23.6 3.1E+02 0.0067 21.8 6.1 66 91-175 13-78 (109)
30 COG0364 Zwf Glucose-6-phosphat 23.3 48 0.001 33.9 1.7 54 137-201 248-302 (483)
31 PLN02646 argininosuccinate lya 23.1 97 0.0021 31.1 3.8 82 100-184 59-178 (474)
32 cd07559 ALDH_ACDHII_AcoD-like 23.0 1.9E+02 0.0041 28.5 5.7 35 103-137 322-356 (480)
33 cd07106 ALDH_AldA-AAD23400 Str 22.5 2E+02 0.0044 27.7 5.8 35 103-137 294-328 (446)
34 PF13829 DUF4191: Domain of un 22.1 1.1E+02 0.0023 28.5 3.5 36 88-123 165-200 (224)
35 cd07143 ALDH_AldA_AN0554 Asper 21.8 2E+02 0.0044 28.4 5.7 33 104-136 328-360 (481)
36 cd07139 ALDH_AldA-Rv0768 Mycob 21.3 2.2E+02 0.0047 27.8 5.7 36 102-137 317-352 (471)
37 PLN02766 coniferyl-aldehyde de 21.2 2.2E+02 0.0048 28.3 5.9 34 103-136 341-374 (501)
38 cd07092 ALDH_ABALDH-YdcW Esche 21.1 2.2E+02 0.0047 27.4 5.6 35 102-137 298-332 (450)
39 cd07402 MPP_GpdQ Enterobacter 20.7 3.3E+02 0.0071 23.2 6.2 26 114-139 26-54 (240)
40 PLN02278 succinic semialdehyde 20.4 2.5E+02 0.0054 27.9 6.0 34 104-137 343-376 (498)
41 TIGR01804 BADH glycine betaine 20.3 2.3E+02 0.005 27.6 5.7 35 103-137 315-349 (467)
No 1
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=100.00 E-value=1.4e-87 Score=646.05 Aligned_cols=190 Identities=90% Similarity=1.417 Sum_probs=187.9
Q ss_pred CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH
Q 043430 69 QKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR 148 (258)
Q Consensus 69 ~~Ws~~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~ 148 (258)
..|+|+|||++|++|||+|||+++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus 18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir 97 (474)
T PLN02291 18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR 97 (474)
T ss_pred CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 043430 149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA 228 (258)
Q Consensus 149 ~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg~~f~~~aR~PDP~RLl~aY~~Sa 228 (258)
+|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus 98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa 177 (474)
T PLN02291 98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA 177 (474)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccchhhhcC
Q 043430 229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEH 258 (258)
Q Consensus 229 atLn~lRa~~~gG~Adl~~~~~W~l~fv~~ 258 (258)
+|||+||+|..|||||||++++||++|+++
T Consensus 178 atlnllRa~~~gg~adl~~~~~W~~~fv~~ 207 (474)
T PLN02291 178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEH 207 (474)
T ss_pred HHHHHHHHHhcCCchhhccccccchhhhcc
Confidence 999999999999999999999999999974
No 2
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=100.00 E-value=3.2e-87 Score=640.40 Aligned_cols=188 Identities=61% Similarity=1.061 Sum_probs=186.8
Q ss_pred CCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHH
Q 043430 71 WTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDT 150 (258)
Q Consensus 71 Ws~~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k 150 (258)
|+|+|||++|++|||+|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus 1 w~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCAE~F~~~~~~~i~~k 80 (443)
T TIGR01358 1 WSPQSWRSKPAAQQPTYPDAGALEAVLDTLRSLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCAESFKDCTADHIRNK 80 (443)
T ss_pred CCchhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCccccCchhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 043430 151 FRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAAT 230 (258)
Q Consensus 151 ~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg~~f~~~aR~PDP~RLl~aY~~Saat 230 (258)
+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||++|
T Consensus 81 ~~~llqMa~vl~~~~~~PVVkVGRiAGQyAKPRS~~~E~~~G~~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~saat 160 (443)
T TIGR01358 81 LRVLLQMAVVLTYGASLPVVKVGRIAGQYAKPRSAPTETRDGVTLPSYRGDIINGPAFTEAARVPDPRRLVRAYHQSAAT 160 (443)
T ss_pred HHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCChhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccchhhhcC
Q 043430 231 LNLLRAFATGGYAAMQRVTQWNLDFTEH 258 (258)
Q Consensus 231 Ln~lRa~~~gG~Adl~~~~~W~l~fv~~ 258 (258)
||+||+|..|||||||++++||++|+++
T Consensus 161 ln~lRa~~~gg~adl~~~~~W~~~f~~~ 188 (443)
T TIGR01358 161 LNLVRALTTGGYADLHQVHYWNLEFVGY 188 (443)
T ss_pred HHHHHHHhcCCchhhcccchhhhhhhhc
Confidence 9999999999999999999999999974
No 3
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=100.00 E-value=4.6e-87 Score=638.82 Aligned_cols=188 Identities=62% Similarity=1.075 Sum_probs=151.3
Q ss_pred CCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHH
Q 043430 70 KWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRD 149 (258)
Q Consensus 70 ~Ws~~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~ 149 (258)
+|+|+||+++|++|||.|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus 1 ~W~p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~I~~ 80 (439)
T PF01474_consen 1 EWSPSSWRSKPAAQQPEYPDPDALAEVLAKLASLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCAESFAECTADHIRD 80 (439)
T ss_dssp ---HHHHHTS--SS---S-HHHHH-HHHHHHTTS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS--STT-SHHHHHH
T ss_pred CCChhhHHhCCcccCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcccChhhcChHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 043430 150 TFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAA 229 (258)
Q Consensus 150 k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg~~f~~~aR~PDP~RLl~aY~~Saa 229 (258)
|+++|+|||.+|++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus 81 k~~~Llqma~vL~~~~~~PVVrVGRiAGQyAKPRS~~~E~vdG~~LPsyRGD~VN~~~~~~~aR~PDP~RlL~aY~~Saa 160 (439)
T PF01474_consen 81 KFKLLLQMALVLTYGAGKPVVRVGRIAGQYAKPRSSPTETVDGVELPSYRGDIVNGPEFTPEARRPDPQRLLRAYFHSAA 160 (439)
T ss_dssp HHHHHHHHHHHHHHHHTS-EEEEEEBSS------S-SB----TTSSB----TTTS-SSSSHHHHS--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEechhhhcccCCCCCCccCCCCccCcccccccccCCCCChhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccchhhhc
Q 043430 230 TLNLLRAFATGGYAAMQRVTQWNLDFTE 257 (258)
Q Consensus 230 tLn~lRa~~~gG~Adl~~~~~W~l~fv~ 257 (258)
|||+||+|++|||||||++++||++||+
T Consensus 161 tLn~lRa~~~~G~Adl~~~~~W~~~fv~ 188 (439)
T PF01474_consen 161 TLNLLRAFASGGFADLHHVHQWNLDFVR 188 (439)
T ss_dssp HHHHHHHHHTSCCG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhhcccccchhhhhc
Confidence 9999999999999999999999999996
No 4
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-83 Score=604.96 Aligned_cols=190 Identities=60% Similarity=1.036 Sum_probs=188.3
Q ss_pred CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH
Q 043430 69 QKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR 148 (258)
Q Consensus 69 ~~Ws~~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~ 148 (258)
+.|+|.||+++|++|||.|||..+|+.|.++|+++|||||++|+++|+++||+||.|+|||||||||||+|.|+++++||
T Consensus 3 ~~w~p~swr~kpi~Q~p~ypd~~~l~~v~a~L~~~PplvfAgEar~Lk~~LA~Va~g~AfLLQgGDCAEsf~~~~a~~Ir 82 (445)
T COG3200 3 TTWLPNSWRAKPIQQQPTYPDAQALARVEARLRSYPPLVFAGEARRLQEQLARVAKGEAFLLQGGDCAESFADHGADNIR 82 (445)
T ss_pred cccCcchhhcCchhcCCCCCCHHHHHHHHHHHhcCCCeeecHHHHHHHHHHHHHhcCceEEEeCCcHHHHHHhcccHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 043430 149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA 228 (258)
Q Consensus 149 ~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg~~f~~~aR~PDP~RLl~aY~~Sa 228 (258)
++|++|+||++||+|++++|||||||||||||||||+++|+.+|++|||||||||||.+|++++|+|||+|||+||++|+
T Consensus 83 d~frvllqMAvVLtfa~~~PVvKVgRIAGQfAKPRSs~~e~~g~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsa 162 (445)
T COG3200 83 DNFRVLLQMAVVLTFAGSRPVVKVGRIAGQFAKPRSSDHEQLGGVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSA 162 (445)
T ss_pred HHHHHHHHHHHHHHhccCCceEEeeeecccccCCCCCchhccCCeeccccccccccCccCChhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccchhhhcC
Q 043430 229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEH 258 (258)
Q Consensus 229 atLn~lRa~~~gG~Adl~~~~~W~l~fv~~ 258 (258)
+|||+||+|+.||||||+.+|+||++||++
T Consensus 163 AtlNLlRafa~gG~A~L~~vh~W~l~Fv~~ 192 (445)
T COG3200 163 ATLNLLRAFASGGLADLENVHRWNLGFVKN 192 (445)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhhhcC
Confidence 999999999999999999999999999974
No 5
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=74.40 E-value=3.8 Score=35.49 Aligned_cols=109 Identities=24% Similarity=0.405 Sum_probs=71.6
Q ss_pred ccccCCCCCCHHHHHHHHHHhccCCCccCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHHH--HH
Q 043430 80 KALQLPEYPNKEELESVLKTLDDFPPIVFAGEA--RSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRI--LL 155 (258)
Q Consensus 80 pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei--~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~--Ll 155 (258)
..-+-...+|..+ +...|+...|+|+.+|+ ..+++.+-. +|+ +.||. ..|.+.|++++.+ +.
T Consensus 27 ri~~~V~v~~tp~---~~gML~kV~~yV~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~ie 92 (152)
T TIGR01309 27 RVNHCVLYPETPT---YLGMLQKVKDYVTWGEIDEDTLELLIRK--RGR---LVGGD------KVTDEYVKEVTGYESVD 92 (152)
T ss_pred cCCCEEEEeCCHH---HHHHHHHhHhheeEecCCHHHHHHHHHH--hcc---ccCCC------cCCHHHHHHHcCCccHH
Confidence 3445566666644 45566667899999985 456666665 554 23653 4666788887654 67
Q ss_pred HHHHHHhhcC-------CCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCC
Q 043430 156 QMGVVLMFGG-------QMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG 205 (258)
Q Consensus 156 qma~vL~~g~-------~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg 205 (258)
.|+..|..++ =+|+.++-=--|-|.+-+...| .+|-.+- ||||-||.
T Consensus 93 dl~~~i~~~~~~f~~~~~~~~FrL~pPr~G~~~~~k~~~--~~gG~~G-~r~~~In~ 146 (152)
T TIGR01309 93 ELAKALVEGEIKLSEAGLKPVFRLHPPRKGFKGGIKTPY--RDGGELG-YRGEKINE 146 (152)
T ss_pred HHHHHHHcCCCCccccCccCceeCCCCCccccccccccc--ccCCCCc-ccHHHHHH
Confidence 7776665433 4577777666788875555666 3455554 99999986
No 6
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=53.30 E-value=14 Score=37.35 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCC
Q 043430 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~-~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G 192 (258)
+|-+.|+-||+ |....++++.|| .|+++|..|--+=...-..-|| =|||.+=. ++|
T Consensus 247 HLlQlLalvAM------------E~P~~~~~~~ir~eK~kvL~sir~~~~~~~~~~~V-----rGQY~~g~------~~g 303 (495)
T PRK05722 247 HLLQLLALVAM------------EPPASLDADSIRDEKVKVLRALRPITPEDVKENTV-----RGQYTAGW------IGG 303 (495)
T ss_pred HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHhcCCCCChhhhhccee-----eccccCCC------CCC
Confidence 78888898887 678888999998 5899997664222111112244 49996422 589
Q ss_pred eecccccCCC
Q 043430 193 VKLPSYRGDN 202 (258)
Q Consensus 193 ~~LPsYRGD~ 202 (258)
..+|.||-+-
T Consensus 304 ~~~~gY~~e~ 313 (495)
T PRK05722 304 KPVPGYREEE 313 (495)
T ss_pred CCCCCccCCC
Confidence 9999999763
No 7
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=49.29 E-value=27 Score=33.52 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHhCCCeeEEecCCcc-chhhhcchhhHHHHHHHHHHHHHHHhhc---CCCceEEeeccccCCCC-CCCCch
Q 043430 121 EAAMGKAFLLQGGDCA-ESFKEFNANNIRDTFRILLQMGVVLMFG---GQMPVVKVGRMAGQFAK-PRSDPF 187 (258)
Q Consensus 121 ~vA~G~AFlLQgGDCA-EsF~e~~~~~I~~k~~~Llqma~vL~~g---~~~PVVkVGRiAGQfAK-PRS~~~ 187 (258)
+.-.++-|+|=+|=|+ |+- +.++.+|..|... .+.++|+ .|=|.| |||+++
T Consensus 10 ~~~~~~~~~lIAGPC~iEs~------------e~~~~~A~~lk~~~~~~g~~~i~----kgsfkKApRTSp~ 65 (290)
T PLN03033 10 QLKAAEPFFLLAGPNVIESE------------EHILRMAKHIKDISTKLGLPLVF----KSSFDKANRTSSK 65 (290)
T ss_pred hcCCCCCeEEEecCChhcCH------------HHHHHHHHHHHHHHHhCCCcEEE----EeeccCCCCCCCC
Confidence 3446677889999986 332 2234555555442 4788888 899999 999986
No 8
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=47.74 E-value=50 Score=23.81 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=41.1
Q ss_pred hCCCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEE----eeccccC
Q 043430 123 AMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVK----VGRMAGQ 178 (258)
Q Consensus 123 A~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVk----VGRiAGQ 178 (258)
..|...++- =...++|.+++.+.+.+-+.++.++...|....+.+-+. -|-.+||
T Consensus 17 ~~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 17 APGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CCCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 446666666 677889999999999999999999999886554444344 3556776
No 9
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=45.70 E-value=23 Score=30.73 Aligned_cols=109 Identities=24% Similarity=0.397 Sum_probs=67.3
Q ss_pred CccccCCCCCCHHHHHHHHHHhccCCCccCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHHH--H
Q 043430 79 KKALQLPEYPNKEELESVLKTLDDFPPIVFAGEA--RSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRI--L 154 (258)
Q Consensus 79 ~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei--~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~--L 154 (258)
...-|--..+|... ++..|+..-|+|+.+|+ ..+++.|.. +|+ +-|+. -.|.+.|.+++.+ +
T Consensus 28 ~ki~~~V~v~~tp~---~~GML~kV~~~V~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~~i 93 (154)
T PRK06049 28 HRVNHCVLVPETPS---YKGMLQKVKDYVTWGEIDADTLAELLRK--RGR---LEGNK------KLTDEYVKENTGYDSI 93 (154)
T ss_pred CcCCCEEEEeCCHH---HHHHHHhhhceeEEeeCchHHHHHHHHH--hCc---ccCCC------CCCHHHHHHhcCCccH
Confidence 34445666666644 55666677799999984 456666665 554 33432 5566666665544 5
Q ss_pred HHHHHHHhhcC--------CCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCC
Q 043430 155 LQMGVVLMFGG--------QMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG 205 (258)
Q Consensus 155 lqma~vL~~g~--------~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg 205 (258)
..|+..|..++ =+|+.++-=--|-|. -....| .+|-.+- ||||.||.
T Consensus 94 edl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~-~~k~~~--~~gG~~G-~r~~~In~ 148 (154)
T PRK06049 94 EELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFG-GIKRPF--KEGGELG-YRGEKINE 148 (154)
T ss_pred HHHHHHHHhCCCCHHHhhcccCceecCCcchhhh-hccccc--ccCCCCC-ccHHHHHH
Confidence 66666554432 356777766667784 333455 3455555 99999986
No 10
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=40.22 E-value=46 Score=33.71 Aligned_cols=64 Identities=28% Similarity=0.447 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCC
Q 043430 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~-~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G 192 (258)
+|-+.|+-||+ |....++++.|| .|+++|.+|--+ .-.. .-||+ |||.+-+ ++|
T Consensus 238 HLlQlL~lvAM------------e~P~~~~a~~ir~eK~kVL~~~r~~-~~~~-~~~vr-----GQY~~g~------~~g 292 (482)
T TIGR00871 238 HLLQLLCLVAM------------EPPASFDADSIRDEKVKVLKALRPI-DPDD-NNVVR-----GQYGAGE------IGG 292 (482)
T ss_pred HHHHHHHHHHc------------CCCCCCCHHHHHHHHHHHHhcCCCC-Cccc-CceEe-----ccccCCC------CCC
Confidence 78888898887 677888999998 589999776522 1111 23454 9997653 468
Q ss_pred eecccccCCC
Q 043430 193 VKLPSYRGDN 202 (258)
Q Consensus 193 ~~LPsYRGD~ 202 (258)
..+|.||-+-
T Consensus 293 ~~~~gY~~e~ 302 (482)
T TIGR00871 293 VSVPGYLEEE 302 (482)
T ss_pred cCCCCccCCC
Confidence 9999999763
No 11
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=39.41 E-value=32 Score=34.91 Aligned_cols=64 Identities=27% Similarity=0.382 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCC
Q 043430 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~-~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G 192 (258)
+|-+-|+-||+ |....++++.|+ .|+++|..|-.+=... +.|| =|||.+= .++|
T Consensus 237 HLlQlLalvAM------------E~P~~~~~~~ir~eK~kvL~s~r~~~~~~--v~~v-----rGQY~~g------~~~g 291 (482)
T PRK12853 237 HLLQLLALVAM------------EPPASFDADAVRDEKAKVLRAIRPLDPDD--VHTV-----RGQYTAG------TVGG 291 (482)
T ss_pred HHHHHHHHHhh------------CCCCCCCHHHHHHHHHHHHhcCCCCCccc--ccEE-----EecCcCC------CCCC
Confidence 77788888877 667778888888 6899997764221111 1234 4999541 2478
Q ss_pred eecccccCCC
Q 043430 193 VKLPSYRGDN 202 (258)
Q Consensus 193 ~~LPsYRGD~ 202 (258)
..+|.||-+.
T Consensus 292 ~~~~gY~~e~ 301 (482)
T PRK12853 292 EPVPGYREEP 301 (482)
T ss_pred CCCCCcccCC
Confidence 8999998664
No 12
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=36.72 E-value=59 Score=27.09 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=46.5
Q ss_pred CccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCc----eEEeeccccCCCCCCCCchhhcCCeecccccCCCC
Q 043430 134 DCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMP----VVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNV 203 (258)
Q Consensus 134 DCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~P----VVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~V 203 (258)
.-...|.+.+++...+-+.++..++..|....+-. ++.+|+.|||.- --+-=.-+|-|+||.-
T Consensus 44 ~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V-------~HlH~HvIPr~~~d~~ 110 (138)
T COG0537 44 RHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEV-------FHLHIHIIPRYKGDDN 110 (138)
T ss_pred cchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCc-------ceEEEEEcCCcCCCCC
Confidence 44677889999999999999999988887665433 678899999853 1223456788887743
No 13
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=32.33 E-value=56 Score=24.73 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCC----ceEEeeccccCC
Q 043430 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQM----PVVKVGRMAGQF 179 (258)
Q Consensus 125 G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~----PVVkVGRiAGQf 179 (258)
|...++-=- ..++|.+++++...+-+.++..++..|....+. .++..|..+||-
T Consensus 27 gh~LVipk~-H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~ 84 (98)
T PF01230_consen 27 GHLLVIPKR-HVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS 84 (98)
T ss_dssp TEEEEEESS-TGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred eEEEEEecc-cccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence 444444333 567899999999999999999999888874332 455567788884
No 14
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.63 E-value=59 Score=30.34 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHHhhcCCCceEEeeccccCCCCCCCCch
Q 043430 154 LLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPF 187 (258)
Q Consensus 154 Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~ 187 (258)
++++|..+. ..+.++++ +|=|. |||+++
T Consensus 31 ~~~~a~~~~-~~g~~~~r----~g~~k-pRts~~ 58 (250)
T PRK13397 31 IRLAASSAK-KLGYNYFR----GGAYK-PRTSAA 58 (250)
T ss_pred HHHHHHHHH-HcCCCEEE----ecccC-CCCCCc
Confidence 456666654 45789999 88887 999987
No 15
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=30.37 E-value=1.2e+02 Score=28.69 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=25.7
Q ss_pred eeEEecCCcc-chhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCC-CCCCch
Q 043430 127 AFLLQGGDCA-ESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAK-PRSDPF 187 (258)
Q Consensus 127 AFlLQgGDCA-EsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~ 187 (258)
-|+|-+|=|+ |+- +++....+-|...+.- .+.+.|. -|-|-| |||+++
T Consensus 2 ~~~viAGPCsvEs~-----e~~~~~A~~lk~~~~~----~~~~~~f----k~sf~KapRTsp~ 51 (258)
T TIGR01362 2 KFFLIAGPCVIESE-----DHALRVAEKLKELTSK----LGVPFIF----KSSFDKANRSSIH 51 (258)
T ss_pred CceEEecCCcccCH-----HHHHHHHHHHHHHHHh----cCCCeEE----ecccCCCCCCCCC
Confidence 4677788886 332 2232222222222221 1333343 688999 999987
No 16
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=29.45 E-value=34 Score=28.59 Aligned_cols=39 Identities=31% Similarity=0.455 Sum_probs=29.4
Q ss_pred CeecccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 043430 192 GVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATL 231 (258)
Q Consensus 192 G~~LPsYRGD~VNg~~f~~~aR~PDP~RLl~aY~~SaatL 231 (258)
|+++-||.|++-=|.-.| .+-.|||++|.++...+-.-|
T Consensus 112 ~itv~SY~g~l~~gi~ad-~~~vpD~~~l~~~~~~~l~eL 150 (153)
T PF06974_consen 112 NITVFSYAGKLDFGIVAD-RDAVPDPQRLADCFEEALEEL 150 (153)
T ss_pred EEEEEEeCCEEEEEEEEc-cccCCCHHHHHHHHHHHHHHH
Confidence 789999999986564333 456899999999988764433
No 17
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=29.44 E-value=96 Score=32.62 Aligned_cols=61 Identities=34% Similarity=0.514 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCC
Q 043430 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~-~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G 192 (258)
+|-+-|+-||+ |....++++.|| .|+++|..|--+=. --|| =|||..-. ++|
T Consensus 353 HLLQlLaLvAM------------E~P~s~~aedIRdEKvKVLrsirpi~~----~~vV-----rGQY~~g~------~~g 405 (604)
T PLN02333 353 HLLQILALFAM------------ETPVSLDAEDIRNEKVKVLRSMRPIQL----EDVV-----IGQYKSHT------KGG 405 (604)
T ss_pred HHHHHHHHHHc------------CCCCCCCHHHHHHHHHHHHhccCCCCc----cceE-----EecccCCC------cCC
Confidence 46666777776 677788899998 67898876642211 1344 59995432 568
Q ss_pred eecccccCC
Q 043430 193 VKLPSYRGD 201 (258)
Q Consensus 193 ~~LPsYRGD 201 (258)
..+|.||-+
T Consensus 406 ~~~~GY~de 414 (604)
T PLN02333 406 VTYPAYTDD 414 (604)
T ss_pred ccCCCcccC
Confidence 999999976
No 18
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=29.33 E-value=78 Score=25.03 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccCCCccCHHHHHHHHHHHHH-HhCCCeeEEecCCccchhhhcchhh
Q 043430 91 EELESVLKTLDDFPPIVFAGEARSLEERLAE-AAMGKAFLLQGGDCAESFKEFNANN 146 (258)
Q Consensus 91 ~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~-vA~G~AFlLQgGDCAEsF~e~~~~~ 146 (258)
.-+.+++..|=+.| ...| +.+....-+ -..|.. ||||++.|.+|.-+.
T Consensus 44 Gll~ell~ilftps---~~~~-~~~~~~Y~~A~~~G~~----g~dC~~~y~~C~~s~ 92 (95)
T smart00718 44 GLLGELLRIVLTPP---DELE-EVLDPDYREAYRAGRA----GGDCDRLYSHCPLSL 92 (95)
T ss_pred chHHHHHHHhhcCC---cchh-hhchHHHHHHHHcCCC----CCCHHHHhCcCchhh
Confidence 37777777776666 2222 234333333 344655 999999999998654
No 19
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=28.08 E-value=1.6e+02 Score=28.78 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=29.0
Q ss_pred CCCccCHHHHHHHHHHHHHH-hCCCeeEEecCCcc
Q 043430 103 FPPIVFAGEARSLEERLAEA-AMGKAFLLQGGDCA 136 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~v-A~G~AFlLQgGDCA 136 (258)
+-||++....+++++.+.++ +.|.+-+|.||.+.
T Consensus 319 ~gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~ 353 (475)
T PRK13473 319 LGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAP 353 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEECCCcC
Confidence 57899999999999999875 55668999999875
No 20
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=27.68 E-value=72 Score=26.33 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=20.8
Q ss_pred cCHHHHHHHHHHHHHH-hCCCeeEEecCCc
Q 043430 107 VFAGEARSLEERLAEA-AMGKAFLLQGGDC 135 (258)
Q Consensus 107 V~a~Ei~~Lr~~La~v-A~G~AFlLQgGDC 135 (258)
+++.-+.+-|...|++ -+|++.++||||-
T Consensus 65 Tfwr~l~sAR~KvA~aLveGkaI~i~Ggey 94 (99)
T COG1342 65 TFWRLLTSARKKVADALVEGKAIIIKGGEY 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEecCCce
Confidence 4455555666666654 5899999999994
No 21
>PF01785 Closter_coat: Closterovirus coat protein; InterPro: IPR002679 This family consist of coat proteins from closterovirus, which belong to the Closteroviridae, which have a positive strand ssRNA genome with no DNA stage during replication. The viral coat protein encapsulates and protects the viral genome. Both the large cp1 and smaller cp2 coat protein originate from the same primary transcript []. Members of the Closterovirus include Beet yellows virus (BYV) (Sugar beet yellows virus) and Grapevine leafroll-associated virus 7.; GO: 0044423 virion part
Probab=27.30 E-value=2.2e+02 Score=24.86 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCC
Q 043430 103 FPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKP 182 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKP 182 (258)
-+-.++.+|.+.+.+.+.+.-..+- +.+.+++..-+-.+.||+...+ +.+.+.. =
T Consensus 9 ~~~~ls~~~~~~~~~~~~~~~~~~~-------------~~~~k~~~~~~~~~~q~~~~~S--TS~k~~~----------~ 63 (188)
T PF01785_consen 9 DPDVLSEEDLKKLSEKLKKFLKEKL-------------GVTDKDFIAFFVMLLQRAATQS--TSKKNSY----------N 63 (188)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhc-------------CCCHHHHHHHHHHHHHHHHHhC--CCccccc----------C
Confidence 4556788888888888877654443 6677777777788888877665 3433322 2
Q ss_pred CCCchhhcCCeecccccCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHHHH
Q 043430 183 RSDPFEEKNGVKLPSYRGDNVNGDAFD-EKSRNPDPQRLIRAYCQSAATLNLLR 235 (258)
Q Consensus 183 RS~~~E~v~G~~LPsYRGD~VNg~~f~-~~aR~PDP~RLl~aY~~SaatLn~lR 235 (258)
.+..+ ++||.+.-.+-+|++|-..-. .....|+|.|....|+. ..++.++|
T Consensus 64 ~~~~~-~~~g~~~~~~~~~~~~~i~~~~~~~~~~N~lR~f~R~~~-~~~~~l~~ 115 (188)
T PF01785_consen 64 LSNTY-TIDGKEYKVKDADVFNFIDSSFSSPGYPNPLRQFMRSFE-AEILDLLR 115 (188)
T ss_pred CCeEE-EEcCEEEEEEHHHHHHHHHhccccCCCCcHHHHHHHHhH-HHHHHHHH
Confidence 34444 678988888888876543222 34689999998777654 45666665
No 22
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.71 E-value=1.7e+02 Score=27.81 Aligned_cols=47 Identities=30% Similarity=0.305 Sum_probs=27.4
Q ss_pred CCeeEEecCCcc-chhhhcchhhHHHHHHHHHHHHHHHhhc---CCCceEEeeccccCCCC-CCCCch
Q 043430 125 GKAFLLQGGDCA-ESFKEFNANNIRDTFRILLQMGVVLMFG---GQMPVVKVGRMAGQFAK-PRSDPF 187 (258)
Q Consensus 125 G~AFlLQgGDCA-EsF~e~~~~~I~~k~~~Llqma~vL~~g---~~~PVVkVGRiAGQfAK-PRS~~~ 187 (258)
++-|+|=+|=|+ |+.+ + ++++|..+... .+.+.|. -|-|-| |||+++
T Consensus 8 ~~~~~~iAGPC~vEs~e-----~-------~~~~A~~lk~~~~~~~~~~~f----K~sf~KapRTSp~ 59 (264)
T PRK05198 8 DLPFFLIAGPCVIESRD-----L-------ALRIAEHLKEITDKLGIPYVF----KASFDKANRSSIH 59 (264)
T ss_pred CCceEEEecCCcccCHH-----H-------HHHHHHHHHHHHHhcCCCeEE----eccccCCCCCCCC
Confidence 346888889886 4322 2 33444444332 1233333 678889 999987
No 23
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=26.07 E-value=1.1e+02 Score=32.02 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCC
Q 043430 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~-~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G 192 (258)
+|-+.|+-||+ |....++++.|| .|+++|..+--+=. --| +=|||..- +++|
T Consensus 324 HLlQlLaLvAM------------EpP~~~~a~~IRdEKvkVLrairp~~~----~~~-----VrGQY~~g------~~~g 376 (573)
T PLN02640 324 HLLQILALFAM------------ETPVSLDAEDIRNEKVKVLRSMKPLQL----EDV-----IVGQYKGH------SKGG 376 (573)
T ss_pred HHHHHHHHHHc------------CCCCCCCHHHHHHHHHHHHhccCCCCh----hce-----EEecccCC------CCCC
Confidence 78888898887 778889999998 58999977642111 123 45999643 2678
Q ss_pred eecccccCC
Q 043430 193 VKLPSYRGD 201 (258)
Q Consensus 193 ~~LPsYRGD 201 (258)
..+|.||-+
T Consensus 377 ~~v~gY~eE 385 (573)
T PLN02640 377 KSYPAYTDD 385 (573)
T ss_pred CcCCCcccC
Confidence 889999964
No 24
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=25.19 E-value=1.5e+02 Score=28.49 Aligned_cols=35 Identities=37% Similarity=0.506 Sum_probs=28.5
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 103 FPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
+-||++.+..+++++.+.++..-.+-+|.||.+..
T Consensus 303 ~gpl~~~~~~~~~~~~i~~a~~~ga~v~~gg~~~g 337 (453)
T cd07149 303 VGPMISEAEAERIEEWVEEAVEGGARLLTGGKRDG 337 (453)
T ss_pred cccccCHHHHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 56889999999999999987655667888887754
No 25
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.04 E-value=1.1e+02 Score=29.22 Aligned_cols=46 Identities=28% Similarity=0.289 Sum_probs=29.0
Q ss_pred CeeEEecCCcc-chhhhcchhhHHHHHHHHHHHHHHHh---hcCCCceEEeeccccCCCC-CCCCch
Q 043430 126 KAFLLQGGDCA-ESFKEFNANNIRDTFRILLQMGVVLM---FGGQMPVVKVGRMAGQFAK-PRSDPF 187 (258)
Q Consensus 126 ~AFlLQgGDCA-EsF~e~~~~~I~~k~~~Llqma~vL~---~g~~~PVVkVGRiAGQfAK-PRS~~~ 187 (258)
+-|+|=+|=|+ |+-+ .++++|..|. ...+.++|. -|-|-| ||||++
T Consensus 15 ~~~~~iaGPCsvEs~e------------~~~~iA~~lk~i~~~~g~~~~f----K~sf~KapRTSp~ 65 (281)
T PRK12457 15 LPFVLFGGINVLESLD------------FTLDVCGEYVEVTRKLGIPFVF----KASFDKANRSSIH 65 (281)
T ss_pred CceEEEecCCcccCHH------------HHHHHHHHHHHHHHHCCCcEEe----eeccCCCCCCCCC
Confidence 45888888885 3322 2344444433 245677765 688999 599987
No 26
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=24.92 E-value=45 Score=26.14 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=11.6
Q ss_pred HHHHHHHHHhccCCCccC
Q 043430 91 EELESVLKTLDDFPPIVF 108 (258)
Q Consensus 91 ~~L~~v~~~L~~~PPLV~ 108 (258)
.+|.++.+-|+.|||++.
T Consensus 59 SQLKRiQRdlrGLPP~~~ 76 (76)
T PF08203_consen 59 SQLKRIQRDLRGLPPLVS 76 (76)
T ss_dssp HHHHHHHHHHHHS-----
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 468999999999999873
No 27
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.43 E-value=3.2e+02 Score=21.90 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCeeEEecC--CccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeec
Q 043430 114 SLEERLAEAAMGKAFLLQGG--DCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGR 174 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgG--DCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGR 174 (258)
+|++.+ ...-+..+|+.| ||- ...+++.+.+.++-|.....-. ..+.+||-++-
T Consensus 40 ~l~~~~--~~~pd~vvl~~G~ND~~---~~~~~~~~~~~l~~li~~~~~~--~~~~~vi~~~~ 95 (169)
T cd01828 40 RLDEDV--ALQPKAIFIMIGINDLA---QGTSDEDIVANYRTILEKLRKH--FPNIKIVVQSI 95 (169)
T ss_pred HHHHHh--ccCCCEEEEEeeccCCC---CCCCHHHHHHHHHHHHHHHHHH--CCCCeEEEEec
Confidence 444444 346789999999 884 3467788887776665543332 35777887764
No 28
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=23.92 E-value=2e+02 Score=27.86 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 103 FPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
+-||++....+++++.+.++....+-+|.||++.+
T Consensus 302 ~Gpli~~~~~~~~~~~v~~a~~~Ga~~~~gg~~~~ 336 (456)
T cd07110 302 LGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPA 336 (456)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCccc
Confidence 36899999999999999987666677888998753
No 29
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=23.60 E-value=3.1e+02 Score=21.75 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=49.4
Q ss_pred HHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceE
Q 043430 91 EELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVV 170 (258)
Q Consensus 91 ~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVV 170 (258)
..|..+++.|...+-.|...+. .....-...++.++=.|+|. +....+..++.+....||+
T Consensus 13 ~~L~~ILeFlGe~~~~~~~~~~----~~~~~~~~~~~~~v~~g~~~---------------~~~~~l~~l~~~~~~~Pvl 73 (109)
T PF06490_consen 13 QRLSTILEFLGEQCEAVSSSDW----SQADWSSPWEACAVILGSCS---------------KLAELLKELLKWAPHIPVL 73 (109)
T ss_pred HhhhhhhhhcCCCeEEecHHHH----HHhhhhcCCcEEEEEecCch---------------hHHHHHHHHHhhCCCCCEE
Confidence 3578889999999999998887 44444567888888899987 2233445677788899999
Q ss_pred Eeecc
Q 043430 171 KVGRM 175 (258)
Q Consensus 171 kVGRi 175 (258)
-+|--
T Consensus 74 llg~~ 78 (109)
T PF06490_consen 74 LLGEH 78 (109)
T ss_pred EECCC
Confidence 97643
No 30
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=23.26 E-value=48 Score=33.92 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=34.4
Q ss_pred chhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCC
Q 043430 137 ESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGD 201 (258)
Q Consensus 137 EsF~e~~~~~I~-~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD 201 (258)
|....++++.|+ .|+++|..|--+=...-..-+|+ |||.+= .++|..+|.||=+
T Consensus 248 E~P~~~~ad~irdEKvKvLkal~p~~~~~~~~~~Vr-----GQY~ag------~~~g~~v~gY~eE 302 (483)
T COG0364 248 EPPASFSADDIRDEKVKVLKALRPISEENVKEDTVR-----GQYTAG------EIDGKKVPGYLEE 302 (483)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCChhhhhhceee-----cceecc------ccCCcccCccccC
Confidence 666777777777 56777765533221111334565 999863 3679999999964
No 31
>PLN02646 argininosuccinate lyase
Probab=23.10 E-value=97 Score=31.06 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=52.7
Q ss_pred hccCCCccCHHHHHHHHHHHHHHhCC---CeeEEecCCccchhhhcchhhHHHHHH------------------------
Q 043430 100 LDDFPPIVFAGEARSLEERLAEAAMG---KAFLLQGGDCAESFKEFNANNIRDTFR------------------------ 152 (258)
Q Consensus 100 L~~~PPLV~a~Ei~~Lr~~La~vA~G---~AFlLQgGDCAEsF~e~~~~~I~~k~~------------------------ 152 (258)
|... .|++.+|.+.+.+.|.++..+ ..|.+|+|+ |+........+.+++.
T Consensus 59 L~~~-Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~~~--ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v~Ta~~L~l 135 (474)
T PLN02646 59 LAKQ-GIITDEDRDSILDGLDEIEKEIEAGKFEWRPDR--EDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDTRLWC 135 (474)
T ss_pred HHHC-CCCCHHHHHHHHHHHHHHHcCcccCCCcCCCCC--CchHHHHHHHHHHHhchhhCcccCCCChhhHHHHHHHHHH
Confidence 5554 889999999999999999765 478888886 5544443333333321
Q ss_pred ---------HHHHHHHHHhh--cCCCceEEeeccccCCCCCCC
Q 043430 153 ---------ILLQMGVVLMF--GGQMPVVKVGRMAGQFAKPRS 184 (258)
Q Consensus 153 ---------~Llqma~vL~~--g~~~PVVkVGRiAGQfAKPRS 184 (258)
.|.++-..|.. ....-+|.+||-=+|.|-|=+
T Consensus 136 r~~l~~l~~~L~~L~~~L~~~A~~~~dtvmpGrTHlQ~AqPiT 178 (474)
T PLN02646 136 RDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVL 178 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccceeec
Confidence 11111111211 135568999999999999955
No 32
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=22.99 E-value=1.9e+02 Score=28.51 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=29.1
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 103 FPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
+-||++....+++++.+.++..-.+-+|.||++.+
T Consensus 322 ~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~ 356 (480)
T cd07559 322 MGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLT 356 (480)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCc
Confidence 47899999999999999987655677888998754
No 33
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=22.46 E-value=2e+02 Score=27.73 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=29.4
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 103 FPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
+-||++....+++++.+.++....+-+|.||.+.+
T Consensus 294 ~gpli~~~~~~~i~~~i~~a~~~ga~~~~gg~~~~ 328 (446)
T cd07106 294 LGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPLD 328 (446)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCC
Confidence 46899999999999999988766677888998764
No 34
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.07 E-value=1.1e+02 Score=28.51 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHh
Q 043430 88 PNKEELESVLKTLDDFPPIVFAGEARSLEERLAEAA 123 (258)
Q Consensus 88 pD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA 123 (258)
+++-.|....++|.++|.-++..|+..+.++|....
T Consensus 165 egQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~AL~ 200 (224)
T PF13829_consen 165 EGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLRALG 200 (224)
T ss_pred CCceeHHHHHHHHHhCCccCCHHHHHHHHHHHHHhc
Confidence 566779999999999999999999999999999876
No 35
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=21.83 E-value=2e+02 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=28.6
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCeeEEecCCcc
Q 043430 104 PPIVFAGEARSLEERLAEAAMGKAFLLQGGDCA 136 (258)
Q Consensus 104 PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCA 136 (258)
-||++....+++.+.|.++....+-+|.||++.
T Consensus 328 gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~ 360 (481)
T cd07143 328 GPQVSQIQYERIMSYIESGKAEGATVETGGKRH 360 (481)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 489999999999999998776677888999874
No 36
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=21.27 E-value=2.2e+02 Score=27.77 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=27.5
Q ss_pred cCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 102 DFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 102 ~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
.+.||++....+++++.+.++..-.+-+|.||++-+
T Consensus 317 ~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~ 352 (471)
T cd07139 317 QIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPA 352 (471)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCC
Confidence 367999999999999999875544456778887643
No 37
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=21.20 E-value=2.2e+02 Score=28.34 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=28.4
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCeeEEecCCcc
Q 043430 103 FPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCA 136 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCA 136 (258)
+-||++....+++++.+.++-...+-+|.||+..
T Consensus 341 ~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~ 374 (501)
T PLN02766 341 QGPQVDKQQFEKILSYIEHGKREGATLLTGGKPC 374 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCcC
Confidence 6799999999999999988766666778898764
No 38
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=21.11 E-value=2.2e+02 Score=27.44 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=28.1
Q ss_pred cCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 102 DFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 102 ~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
.+.||++....+++++.+.++. ..+-++.||...+
T Consensus 298 ~~gpli~~~~~~~i~~~i~~a~-~ga~~~~gg~~~~ 332 (450)
T cd07092 298 EMGPLNSAAQRERVAGFVERAP-AHARVLTGGRRAE 332 (450)
T ss_pred ccCcccCHHHHHHHHHHHHHHH-cCCEEEeCCCCCC
Confidence 3478999999999999999887 5566788887643
No 39
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=20.75 E-value=3.3e+02 Score=23.19 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=17.1
Q ss_pred HHHHHHHHHhC---CCeeEEecCCccchh
Q 043430 114 SLEERLAEAAM---GKAFLLQGGDCAESF 139 (258)
Q Consensus 114 ~Lr~~La~vA~---G~AFlLQgGDCAEsF 139 (258)
.|++.+..+.. .=.|+|.+||-.+..
T Consensus 26 ~l~~~~~~i~~~~~~~d~vi~~GDl~~~~ 54 (240)
T cd07402 26 SLEAVLAHINALHPRPDLVLVTGDLTDDG 54 (240)
T ss_pred HHHHHHHHHHhcCCCCCEEEECccCCCCC
Confidence 44444444433 667999999988653
No 40
>PLN02278 succinic semialdehyde dehydrogenase
Probab=20.39 E-value=2.5e+02 Score=27.93 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.2
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 104 PPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 104 PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
-||++....+++++.+.++....+-+|.||+..+
T Consensus 343 Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~ 376 (498)
T PLN02278 343 GPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHS 376 (498)
T ss_pred CCccCHHHHHHHHHHHHHHHhCCCEEEeCCccCC
Confidence 4899999999999999987555566777887653
No 41
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=20.31 E-value=2.3e+02 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=28.2
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccc
Q 043430 103 FPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAE 137 (258)
Q Consensus 103 ~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAE 137 (258)
+.||++....+++.+.+.++....+-+|.||...+
T Consensus 315 ~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~ 349 (467)
T TIGR01804 315 MGPLISAEHRDKVESYIEKGKEEGATLACGGKRPE 349 (467)
T ss_pred cCccCCHHHHHHHHHHHHHHHHCCCEEEeCCCccc
Confidence 46899999999999999986655667788887643
Done!