Query 043430
Match_columns 258
No_of_seqs 152 out of 456
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzi_A Probable 3-deoxy-D-arab 100.0 3E-84 1E-88 620.2 12.4 181 73-257 26-206 (462)
2 3p0t_A Uncharacterized protein 67.0 34 0.0011 26.5 8.6 96 125-232 40-135 (138)
3 3ohe_A Histidine triad (HIT) p 54.7 77 0.0026 25.0 9.9 84 135-226 43-128 (137)
4 3tml_A 2-dehydro-3-deoxyphosph 44.6 22 0.00077 32.2 4.5 55 126-202 16-72 (288)
5 4e9i_A Glucose-6-phosphate 1-d 41.8 22 0.00075 35.3 4.3 59 114-201 295-354 (541)
6 3i24_A HIT family hydrolase; s 35.2 41 0.0014 27.2 4.3 61 135-203 43-103 (149)
7 3ksv_A Uncharacterized protein 33.6 1.8E+02 0.0061 23.0 9.6 93 125-227 46-142 (149)
8 2rf4_B DNA-directed RNA polyme 33.6 18 0.00063 28.0 1.8 24 89-112 60-83 (87)
9 3lb5_A HIT-like protein involv 32.2 1.4E+02 0.0047 24.1 7.0 89 125-225 63-155 (161)
10 3tqk_A Phospho-2-dehydro-3-deo 31.5 2.3E+02 0.0077 26.7 9.1 78 111-209 32-111 (346)
11 3nrd_A Histidine triad (HIT) p 29.7 59 0.002 25.5 4.3 61 135-203 45-105 (135)
12 3fs2_A 2-dehydro-3-deoxyphosph 27.2 82 0.0028 28.8 5.3 56 126-202 40-96 (298)
13 2oik_A Histidine triad (HIT) p 26.6 2.2E+02 0.0076 22.2 7.2 69 125-202 41-109 (154)
14 3sz8_A 2-dehydro-3-deoxyphosph 24.9 90 0.0031 28.3 5.1 56 126-202 19-75 (285)
15 3l7x_A SMU.412C, putative HIT- 24.6 2.9E+02 0.0098 22.6 7.8 70 124-201 70-143 (173)
16 3i4s_A Histidine triad protein 23.4 88 0.003 25.2 4.3 92 135-241 48-141 (149)
17 3h7a_A Short chain dehydrogena 23.2 3.1E+02 0.011 22.5 9.5 89 90-180 41-148 (252)
18 3ano_A AP-4-A phosphorylase; d 22.7 3.1E+02 0.011 23.4 7.8 86 136-231 115-206 (218)
19 2bh9_A G6PD, glucose-6-phospha 21.7 57 0.002 31.9 3.3 61 114-201 237-299 (489)
No 1
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=100.00 E-value=3e-84 Score=620.18 Aligned_cols=181 Identities=46% Similarity=0.785 Sum_probs=179.4
Q ss_pred ccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHH
Q 043430 73 VDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFR 152 (258)
Q Consensus 73 ~~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~ 152 (258)
++||+++|++|||.|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|++|++
T Consensus 26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~ 104 (462)
T 3rzi_A 26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR 104 (462)
T ss_dssp HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 043430 153 ILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLN 232 (258)
Q Consensus 153 ~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg~~f~~~aR~PDP~RLl~aY~~SaatLn 232 (258)
+|+|||+||+|++++|||||||||||||||||+++| |++|||||||||||.+||+++|+|||+|||+||+||++|||
T Consensus 105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN 181 (462)
T 3rzi_A 105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN 181 (462)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccchhhhc
Q 043430 233 LLRAFATGGYAAMQRVTQWNLDFTE 257 (258)
Q Consensus 233 ~lRa~~~gG~Adl~~~~~W~l~fv~ 257 (258)
+||+|++|||||||++++||++||+
T Consensus 182 llRa~~~gG~Adl~~~~~W~~~fv~ 206 (462)
T 3rzi_A 182 LVRALTSSGLASLHLVHDWNREFVR 206 (462)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCChhhhhccccchhhhcc
Confidence 9999999999999999999999996
No 2
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=67.03 E-value=34 Score=26.49 Aligned_cols=96 Identities=15% Similarity=0.233 Sum_probs=62.9
Q ss_pred CCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCC
Q 043430 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN 204 (258)
Q Consensus 125 G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VN 204 (258)
|...|+== .-.++|.|++++.+.+-++++..++..|....+..-+.+ ++|||-= --+-=.-+|-|.||-+|
T Consensus 40 gH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~-~~~gq~v-------~HlH~HiiPr~~~d~~~ 110 (138)
T 3p0t_A 40 GHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-IIAGLEV-------PHLHVHVFPTRSLSDFG 110 (138)
T ss_dssp TCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEE-EECCSSC-------SSCCEEEEEESCGGGSS
T ss_pred cEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EECCccc-------CEEEEEEeccccCCCCc
Confidence 55555543 236778999999999999999999888865555554555 3677721 12233458889987554
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 043430 205 GDAFDEKSRNPDPQRLIRAYCQSAATLN 232 (258)
Q Consensus 205 g~~f~~~aR~PDP~RLl~aY~~SaatLn 232 (258)
|.......+|+-|-.-|..-+..|+
T Consensus 111 ---~~~~~~~~~~~~l~~~~~~l~~~l~ 135 (138)
T 3p0t_A 111 ---FANVDRNPSPESLDEAQAKIKAALA 135 (138)
T ss_dssp ---STTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---ccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3333677888888777766555544
No 3
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=54.69 E-value=77 Score=24.97 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=58.5
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCCC-CCCC-CCC
Q 043430 135 CAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG-DAFD-EKS 212 (258)
Q Consensus 135 CAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VNg-~~f~-~~a 212 (258)
-.+++.|++++...+-+..+..++..|....+..-+.|| .|||-= --+-=.-+|-|.||.... +-+. ...
T Consensus 43 h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-------~HlH~HviPR~~~D~~~p~~vw~~~~~ 114 (137)
T 3ohe_A 43 GIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-------PQLHLHHIVRYQGDPAWPGPVWGKQPP 114 (137)
T ss_dssp TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTTTTSCCTTSSCC
T ss_pred ccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-------CEEEEEEeCCCCCCCCCCcccccCCCC
Confidence 357788999998888889999999988877777789999 888852 223346789999997642 2222 234
Q ss_pred CCCChHHHHHHHHH
Q 043430 213 RNPDPQRLIRAYCQ 226 (258)
Q Consensus 213 R~PDP~RLl~aY~~ 226 (258)
+..|++-|-.-+..
T Consensus 115 ~~~~~eel~~~~~~ 128 (137)
T 3ohe_A 115 VPYTEEQQASVKAK 128 (137)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 55667655444433
No 4
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=44.61 E-value=22 Score=32.25 Aligned_cols=55 Identities=31% Similarity=0.448 Sum_probs=24.3
Q ss_pred CeeEEecCCcc-chhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCC-CCCCchhhcCCeecccccCCC
Q 043430 126 KAFLLQGGDCA-ESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAK-PRSDPFEEKNGVKLPSYRGDN 202 (258)
Q Consensus 126 ~AFlLQgGDCA-EsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~v~G~~LPsYRGD~ 202 (258)
+-|++=+|=|+ |+ .+.+.+..+-|..++..+. .++| +-+-|-| ||++++ ||||.-
T Consensus 16 ~~~~vIaGPCsie~-----~~~~~e~A~~lk~~~~~~~----~~~v----~k~~f~KapRTs~~---------sf~Glg 72 (288)
T 3tml_A 16 QPFFLIAGTCVVES-----EQMTIDTAGRLKEICEKLN----VPFI----YKSSYDKANRSSGK---------SFRGLG 72 (288)
T ss_dssp SCCEEEEECSBCCC-----HHHHHHHHHHHHHHHHHHT----CCEE----EECBC-----------------------C
T ss_pred CceEEEEeCCcCCC-----HHHHHHHHHHHHHHHHHcC----CCEE----EecccccCCCCCCC---------CcCCcC
Confidence 45788888887 43 4555555555555544442 5544 3567888 999987 888863
No 5
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=41.79 E-value=22 Score=35.26 Aligned_cols=59 Identities=29% Similarity=0.441 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHH-HHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCC
Q 043430 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRD-TFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~-k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G 192 (258)
+|-+.|+-||+ |....++++.||+ |+|+|..|--+ . .--||+ |||..= .+|
T Consensus 295 HLlQlL~LvAM------------EpP~s~~a~~iRdEKvKVLralrpi-~---~~~vVr-----GQY~~g-------~~g 346 (541)
T 4e9i_A 295 HLTQILSLLTM------------EKPRSLSAEDIRDEKVQVLRQVVPA-N---PAECVL-----GQYTAS-------ADG 346 (541)
T ss_dssp HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---TTSEEE-----EEEECC-------SSS
T ss_pred HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHHccCCC-C---ccceEE-----ccccCC-------CCC
Confidence 78889999998 8889999999995 89999765331 1 112444 999762 267
Q ss_pred eecccccCC
Q 043430 193 VKLPSYRGD 201 (258)
Q Consensus 193 ~~LPsYRGD 201 (258)
.+|.||-+
T Consensus 347 -~v~gY~~e 354 (541)
T 4e9i_A 347 -STPGYLDD 354 (541)
T ss_dssp -SSCCGGGC
T ss_pred -CCCCccCC
Confidence 89999976
No 6
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=35.23 E-value=41 Score=27.16 Aligned_cols=61 Identities=7% Similarity=0.051 Sum_probs=46.4
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCC
Q 043430 135 CAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNV 203 (258)
Q Consensus 135 CAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~V 203 (258)
-.+++.|++++...+-+..+..++..|....+..-+.|| +|||-= --+-=.-+|-|.||..
T Consensus 43 Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~-~aGq~V-------~HlH~HvIPR~~~D~~ 103 (149)
T 3i24_A 43 ELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIG-ALGNLV-------PQLHIHHIARFTTDVA 103 (149)
T ss_dssp TCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTT
T ss_pred ccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEh-hhhCCC-------CEEEEEEeCCccCCCC
Confidence 467888999998888888888888888876666779999 688842 1223456899999864
No 7
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=33.64 E-value=1.8e+02 Score=23.04 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=57.9
Q ss_pred CCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEe----eccccCCCCCCCCchhhcCCeecccccC
Q 043430 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKV----GRMAGQFAKPRSDPFEEKNGVKLPSYRG 200 (258)
Q Consensus 125 G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkV----GRiAGQfAKPRS~~~E~v~G~~LPsYRG 200 (258)
|...|+==- -.++|.|++.+.+.+-+.++..++..|....+..-++| |..|||- .--+-=.-+|-|+|
T Consensus 46 gH~LViPk~-H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~-------v~HlHiHiiPR~~~ 117 (149)
T 3ksv_A 46 GHMLVIPKE-HASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQE-------VPHVHFHIIPKTDE 117 (149)
T ss_dssp TCEEEEESS-CCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCC-------SSSCCEEEEEECCT
T ss_pred CEEEEEeCh-hhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccCCC-------CCEEEEEEEecccC
Confidence 555555433 35789999999999999999999998876655454555 5677762 11122345788888
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHH
Q 043430 201 DNVNGDAFDEKSRNPDPQRLIRAYCQS 227 (258)
Q Consensus 201 D~VNg~~f~~~aR~PDP~RLl~aY~~S 227 (258)
|- |..+.-.....+++-|-.-+..-
T Consensus 118 d~--g~~~~w~~~~~~~~~l~~~~~~l 142 (149)
T 3ksv_A 118 KT--GLKIGWDTVKVASDELAEDAKRY 142 (149)
T ss_dssp TS--SCCCCCCCCCCCHHHHHHHHHHH
T ss_pred CC--CcccCCCCCCCCHHHHHHHHHHH
Confidence 62 33333334456776655544443
No 8
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=33.60 E-value=18 Score=28.00 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHhccCCCccCHHHH
Q 043430 89 NKEELESVLKTLDDFPPIVFAGEA 112 (258)
Q Consensus 89 D~~~L~~v~~~L~~~PPLV~a~Ei 112 (258)
--.+|..|.+.|+.|||++...|.
T Consensus 60 ~LsQLKRvQRdlrGLPP~~~e~~~ 83 (87)
T 2rf4_B 60 SISQLKRIQRDFKGLPPAQDFSAA 83 (87)
T ss_dssp HHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhcCCCcchhcccC
Confidence 356799999999999999987663
No 9
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=32.22 E-value=1.4e+02 Score=24.08 Aligned_cols=89 Identities=7% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEE----eeccccCCCCCCCCchhhcCCeecccccC
Q 043430 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVK----VGRMAGQFAKPRSDPFEEKNGVKLPSYRG 200 (258)
Q Consensus 125 G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVk----VGRiAGQfAKPRS~~~E~v~G~~LPsYRG 200 (258)
|...|+==-- .++|.|++++.+.+-++++..++..|....+..-++ .|..|||-= --.-=.-+|-|.|
T Consensus 63 gH~LViPk~H-~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V-------~HlHiHiiPR~~~ 134 (161)
T 3lb5_A 63 GHTLVIPKKG-SRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTV-------YHLHFHIIPRMEG 134 (161)
T ss_dssp TCEEEEESSC-CSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEESGGGTCCS-------CSCCEEEEEECTT
T ss_pred cEEEEEEeec-cchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCC-------CEEEEEEEcccCC
Confidence 7776665443 678889999999999999999988876443444344 467888732 1122356899999
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHH
Q 043430 201 DNVNGDAFDEKSRNPDPQRLIRAYC 225 (258)
Q Consensus 201 D~VNg~~f~~~aR~PDP~RLl~aY~ 225 (258)
|-.+-. .....+|+-|-.-|.
T Consensus 135 d~~~~~----~~~~~~~~~l~~~~~ 155 (161)
T 3lb5_A 135 IELTPH----NNIITPTEILEENAK 155 (161)
T ss_dssp CCC----------CCCHHHHHHHHH
T ss_pred CCCCcC----cccCCCHHHHHHHHH
Confidence 976531 344567766544443
No 10
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=31.47 E-value=2.3e+02 Score=26.65 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCC--eeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchh
Q 043430 111 EARSLEERLAEAAMGK--AFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFE 188 (258)
Q Consensus 111 Ei~~Lr~~La~vA~G~--AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E 188 (258)
-|..=|+.+.++-.|+ .|++=.|=|.=- +++.+.+-.+-|..++.-+.. ...-|.| |-|-|||++ +
T Consensus 32 ~v~~~R~~i~~Il~G~d~rllVIaGPCSie----d~eq~leyA~~Lk~~~~~~~d-~l~~vmR-----~y~~KPRTs-~- 99 (346)
T 3tqk_A 32 TVRKSRKEIANIIHGNDDRVAVVVGPCSIH----DPAAAIEYATKLKEQVKKFHK-DILIIMR-----VYFEKPRTT-I- 99 (346)
T ss_dssp HHHHHHHHHHHHHHTSSCSEEEEEECSSCS----CHHHHHHHHHHHHHHHHHHTT-TEEEEEE-----CCCCCCCSS-C-
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEEecCccC----CHHHHHHHHHHHHHHHhhhcc-cceEEee-----ecccCCCCC-c-
Confidence 3445678888998886 599999999643 445555555555555554332 1122444 458899987 3
Q ss_pred hcCCeecccccCCCCCCCCCC
Q 043430 189 EKNGVKLPSYRGDNVNGDAFD 209 (258)
Q Consensus 189 ~v~G~~LPsYRGD~VNg~~f~ 209 (258)
.|.| ++|+|..+
T Consensus 100 --------g~kG-L~nDP~ld 111 (346)
T 3tqk_A 100 --------GWKG-FINDPDLD 111 (346)
T ss_dssp --------SCCC-TTTCTTSS
T ss_pred --------Cccc-cccCCCCC
Confidence 4666 67886655
No 11
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=29.74 E-value=59 Score=25.51 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=45.8
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCC
Q 043430 135 CAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNV 203 (258)
Q Consensus 135 CAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~V 203 (258)
-.+++.|++++...+-++.+..++..|....+.-=+.+| .|||-- --+-=.-+|-|.||..
T Consensus 45 h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-------~HlH~HviPR~~~D~~ 105 (135)
T 3nrd_A 45 DIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-ALGNIV-------RQLHVHVIARREGDPN 105 (135)
T ss_dssp TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTT
T ss_pred ccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-eccCCC-------CEEEEEEecCCCCCCC
Confidence 467889999998888888898888888765555568898 788842 1233466899999974
No 12
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=27.19 E-value=82 Score=28.78 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=28.0
Q ss_pred CeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCC-CCCCchhhcCCeecccccCCC
Q 043430 126 KAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAK-PRSDPFEEKNGVKLPSYRGDN 202 (258)
Q Consensus 126 ~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~v~G~~LPsYRGD~ 202 (258)
+.|++=+|=|+=- +.+.+.+..+-|..++..+. .++|- -+-|-| ||++++ ||||--
T Consensus 40 ~~l~vIaGPCsie----s~e~~~~~A~~lk~~~~~~~----~~~v~----k~~f~KapRTs~~---------sf~Glg 96 (298)
T 3fs2_A 40 APLALIAGPCQME----TRDHAFEMAGRLKEMTDKLG----IGLVY----KSSFDKANRTSLK---------AARGIG 96 (298)
T ss_dssp SCCEEEEECSBCC----CHHHHHHHHHHHHHHHHHHT----CCEEE----ECBCCCCC------------------CC
T ss_pred CceEEEEeCCcCC----CHHHHHHHHHHHHHHHHHcC----CcEEE----EcccccCCCCCCC---------CcCCcC
Confidence 3578888888732 45556666666655555443 33332 456889 999987 888863
No 13
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=26.59 E-value=2.2e+02 Score=22.19 Aligned_cols=69 Identities=6% Similarity=0.114 Sum_probs=47.3
Q ss_pred CCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCC
Q 043430 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDN 202 (258)
Q Consensus 125 G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~ 202 (258)
|...|+-= .-..+|.|++.+.+.+-++++..++..|....+.+=+.|+ .+||- .--+-=.-+|-|.||.
T Consensus 41 gh~LViPk-~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni~-~~gq~-------v~HlHiHiiPr~~~d~ 109 (154)
T 2oik_A 41 GFCRVILN-RHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLA-SLGNM-------TPHVHWHVIPRFKRDR 109 (154)
T ss_dssp TCEEEEES-SCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-ECCSS-------SCSCEEEEEEECTTSS
T ss_pred eEEEEEec-CCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEhH-HhCCC-------CCEEEEEEeCCCCCCC
Confidence 66666543 3467888999999988888999998888754454557776 56751 1122345588888875
No 14
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=24.87 E-value=90 Score=28.27 Aligned_cols=56 Identities=29% Similarity=0.309 Sum_probs=36.2
Q ss_pred CeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCC-CCCCchhhcCCeecccccCCC
Q 043430 126 KAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAK-PRSDPFEEKNGVKLPSYRGDN 202 (258)
Q Consensus 126 ~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAK-PRS~~~E~v~G~~LPsYRGD~ 202 (258)
+.|++=+|=|+=- +.+.+.+..+-|..++.-+. .++|- -+-|-| ||+++. ||||.-
T Consensus 19 ~~~~viaGPCsie----~~e~~~~~A~~lk~~~~~~~----~~~v~----k~~f~KapRTs~~---------sf~G~g 75 (285)
T 3sz8_A 19 LPFVLFGGINVLE----SLDFTLDVCGEYVAVTRKLG----IPFVF----KASFDKANRSSIH---------SYRGVG 75 (285)
T ss_dssp SCCEEEEEEEECC----CHHHHHHHHHHHHHHHHHHT----CCEEE----EEESCCTTCSSTT---------SCCCSC
T ss_pred CceEEEEeCCcCC----CHHHHHHHHHHHHHHHHhhe----eeeEE----EeecccCCCCCCC---------CcCCcC
Confidence 4678888888731 45556666666665555543 34332 355889 999987 899873
No 15
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=24.62 E-value=2.9e+02 Score=22.55 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEe----eccccCCCCCCCCchhhcCCeeccccc
Q 043430 124 MGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKV----GRMAGQFAKPRSDPFEEKNGVKLPSYR 199 (258)
Q Consensus 124 ~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkV----GRiAGQfAKPRS~~~E~v~G~~LPsYR 199 (258)
-|...|+== ...++|.|++++.+.+-+.++..++..|....+..=++| |..|||-= | -+-=.-+|-|+
T Consensus 70 pgH~LVIPk-rHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V-~------HlHiHiIPR~~ 141 (173)
T 3l7x_A 70 KGHTLVIPK-EHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTV-F------HAHVHLVPRFA 141 (173)
T ss_dssp TTCEEEEES-SCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEEEEECCSGGGTCCS-C------SCCEEEEEECC
T ss_pred CcEEEEEec-cccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCc-C------EEEEEEEeccc
Confidence 377777754 447889999999998888888888887764434443444 57888731 1 12234588888
Q ss_pred CC
Q 043430 200 GD 201 (258)
Q Consensus 200 GD 201 (258)
||
T Consensus 142 ~d 143 (173)
T 3l7x_A 142 DS 143 (173)
T ss_dssp -C
T ss_pred CC
Confidence 75
No 16
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=23.45 E-value=88 Score=25.25 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=56.6
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcCCeecccccCCCCC-CCCCCCCCC
Q 043430 135 CAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN-GDAFDEKSR 213 (258)
Q Consensus 135 CAEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~G~~LPsYRGD~VN-g~~f~~~aR 213 (258)
-.++|.|++++...+-+.++..++..|....+..-+.+| .|||== --+-=.-+|-|.||... ++-+....|
T Consensus 48 H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~-~aGq~V-------~HlH~HvIPR~~~D~~~p~pvw~~~~~ 119 (149)
T 3i4s_A 48 DAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-ALGNLV-------PQLHVHIIARRTGDAAWPRPVWGVMQP 119 (149)
T ss_dssp TCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTTTTSCCTTTSCC
T ss_pred ccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-ecCCcC-------CEEEEEEECCcCCCCCCCccccCCCcC
Confidence 367888999998888888888888888754444457887 778731 12234568889998753 333332223
Q ss_pred -CCChHHHHHHHHHHHHHHHHHHHHhccc
Q 043430 214 -NPDPQRLIRAYCQSAATLNLLRAFATGG 241 (258)
Q Consensus 214 -~PDP~RLl~aY~~SaatLn~lRa~~~gG 241 (258)
..|+.-| ++..+.||....-|
T Consensus 120 ~~~~~eel-------~~~a~~Ir~~L~~~ 141 (149)
T 3i4s_A 120 LAHDATEV-------QNFISALRRKIWLG 141 (149)
T ss_dssp CCCCHHHH-------HHHHHHHHHHHCC-
T ss_pred CCCCHHHH-------HHHHHHHHHHHhcC
Confidence 3355322 34555666655444
No 17
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=23.21 E-value=3.1e+02 Score=22.48 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCCC--------ccCHHHHHHHHHHHHHHhCCC--eeEEecCCc-cchhhhcchhhHHHHH-------
Q 043430 90 KEELESVLKTLDDFPP--------IVFAGEARSLEERLAEAAMGK--AFLLQGGDC-AESFKEFNANNIRDTF------- 151 (258)
Q Consensus 90 ~~~L~~v~~~L~~~PP--------LV~a~Ei~~Lr~~La~vA~G~--AFlLQgGDC-AEsF~e~~~~~I~~k~------- 151 (258)
.+.++++.+.|+...+ |-..++++.+-+.+.+- |+ .++--+|-. -..|.+.+.+.+++.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~ 118 (252)
T 3h7a_A 41 GEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAG 118 (252)
T ss_dssp GGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHH
Confidence 3456666666654432 44567777777777665 53 333334422 2346666666665544
Q ss_pred -HHHHHHHHHHhhcCCCceEEeeccccCCC
Q 043430 152 -RILLQMGVVLMFGGQMPVVKVGRMAGQFA 180 (258)
Q Consensus 152 -~~Llqma~vL~~g~~~PVVkVGRiAGQfA 180 (258)
.++..+...|....+.-||-|+-++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 148 (252)
T 3h7a_A 119 FVSGRESARLMLAHGQGKIFFTGATASLRG 148 (252)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEEGGGTCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCHHHcCC
Confidence 34444444444444556999999998754
No 18
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=22.66 E-value=3.1e+02 Score=23.44 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=53.7
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEe----eccccCCCCCCCCch-hhcCCeecccccCCC-CCCCCCC
Q 043430 136 AESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKV----GRMAGQFAKPRSDPF-EEKNGVKLPSYRGDN-VNGDAFD 209 (258)
Q Consensus 136 AEsF~e~~~~~I~~k~~~Llqma~vL~~g~~~PVVkV----GRiAGQfAKPRS~~~-E~v~G~~LPsYRGD~-VNg~~f~ 209 (258)
..+|.+++.+....-.+++..+..+|....+..=+.| |+.|||- . .-+-=.-+|-|.||. .. +.
T Consensus 115 v~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~-------V~~HlHiHIIPR~~gd~~f~---~v 184 (218)
T 3ano_A 115 VSELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGS-------LAEHLHVHVVPRWGGDANFI---TI 184 (218)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEEEEEEEESGGGTCT-------TTTSCCEEEEEECTTGGGCC---CC
T ss_pred hCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCc-------ccCEEEEEEEcccCCCCCcc---cc
Confidence 6789999999999988998888888877665554444 5778871 1 122345578888873 21 11
Q ss_pred CCCCCCChHHHHHHHHHHHHHH
Q 043430 210 EKSRNPDPQRLIRAYCQSAATL 231 (258)
Q Consensus 210 ~~aR~PDP~RLl~aY~~SaatL 231 (258)
-..+..+|+-|-..|..-+..|
T Consensus 185 ~g~~~~~~~~l~~~~~~Lr~al 206 (218)
T 3ano_A 185 IGGSKVIPQLLRDTRRLLATEW 206 (218)
T ss_dssp C-----CCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHH
Confidence 1223577777766666554444
No 19
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=21.65 E-value=57 Score=31.91 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEeeccccCCCCCCCCchhhcC-
Q 043430 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKN- 191 (258)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~-~k~~~Llqma~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~v~- 191 (258)
+|-+.|+-||+ |....++++.|| .|+|+|..|--+ . ..-|| =|||..- ..+
T Consensus 237 HLlQlL~lvAM------------EpP~s~~a~~iRdEKvKVLralrp~-~---~~~~V-----rGQY~~g------~~~~ 289 (489)
T 2bh9_A 237 HLLQMLCLVAM------------EKPASTNSDDVRDEKVKVLKCISEV-Q---ANNVV-----LGQYVGN------PDGE 289 (489)
T ss_dssp HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---GGGEE-----EEEEECC------TTSC
T ss_pred HHHHHHHHHHh------------CCCCCCCHHHHHHHHHHHHhccCCC-C---ccCeE-----EecccCC------cCCC
Confidence 78899999998 778889999999 679999766432 1 11144 4999753 123
Q ss_pred CeecccccCC
Q 043430 192 GVKLPSYRGD 201 (258)
Q Consensus 192 G~~LPsYRGD 201 (258)
|..+|.||-+
T Consensus 290 g~~v~gY~~E 299 (489)
T 2bh9_A 290 GEATKGYLDD 299 (489)
T ss_dssp STTSSCGGGC
T ss_pred CCCCCCcccC
Confidence 6788999943
Done!