BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>043434
MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKL
DILDGRNQPGREPEAPQQPFPAETPCCSIM

High Scoring Gene Products

Symbol, full name Information P value
AT3G20180 protein from Arabidopsis thaliana 9.0e-06
AT3G07600 protein from Arabidopsis thaliana 1.9e-05
AT4G05030 protein from Arabidopsis thaliana 0.00010
AT5G48290 protein from Arabidopsis thaliana 0.00013

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043434
        (90 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2087580 - symbol:AT3G20180 "AT3G20180" species...   103  9.0e-06   1
TAIR|locus:2091112 - symbol:AT3G07600 species:3702 "Arabi...   100  1.9e-05   1
TAIR|locus:2138376 - symbol:AT4G05030 "AT4G05030" species...    93  0.00010   1
TAIR|locus:2156253 - symbol:AT5G48290 species:3702 "Arabi...    94  0.00013   1


>TAIR|locus:2087580 [details] [associations]
            symbol:AT3G20180 "AT3G20180" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND]
            EMBL:CP002686 IPI:IPI00542114 RefSeq:NP_188653.1 UniGene:At.63564
            ProteinModelPortal:F4JDJ0 DNASU:821562 EnsemblPlants:AT3G20180.1
            GeneID:821562 KEGG:ath:AT3G20180 OMA:GEFQDEL PhylomeDB:F4JDJ0
            Uniprot:F4JDJ0
        Length = 118

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query:     1 MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGD-IDEVALANMLRRKIGYVEMMK 59
             ++S KCR KA Q+     G+ SVAM+G+    + V+GD +D  +L   LR+K  +V +  
Sbjct:     7 VNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKKACHVTLET 66

Query:    60 LD 61
             L+
Sbjct:    67 LE 68


>TAIR|locus:2091112 [details] [associations]
            symbol:AT3G07600 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0030001 EMBL:AC009176
            ProtClustDB:CLSN2684848 IPI:IPI00519941 RefSeq:NP_187417.1
            UniGene:At.18333 UniGene:At.48632 ProteinModelPortal:Q9SSF0
            SMR:Q9SSF0 EnsemblPlants:AT3G07600.1 GeneID:819951
            KEGG:ath:AT3G07600 eggNOG:NOG286763 OMA:QDPNCRI
            Genevestigator:Q9SSF0 Uniprot:Q9SSF0
        Length = 157

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query:     7 RTKAFQIIAGFPGLLSVAMKGDDLRHMEVIG-DIDEVALANMLRRKIGYVEMMKL 60
             R KA +    F G+ +V +KGD    +EV G ++D +AL N LR+K+ + E++ +
Sbjct:    17 RAKAMKTAVQFKGVNAVEIKGDHRNQIEVTGVEVDMIALINTLRKKVAFAELVSV 71


>TAIR|locus:2138376 [details] [associations]
            symbol:AT4G05030 "AT4G05030" species:3702 "Arabidopsis
            thaliana" [GO:0046872 "metal ion binding" evidence=ISS]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161502 EMBL:AF162444
            IPI:IPI00529329 PIR:C85063 RefSeq:NP_567284.1 UniGene:At.54153
            ProteinModelPortal:Q9S9T4 SMR:Q9S9T4 EnsemblPlants:AT4G05030.1
            GeneID:825845 KEGG:ath:AT4G05030 TAIR:At4g05030 eggNOG:NOG284398
            InParanoid:Q9S9T4 OMA:YYGYYCH PhylomeDB:Q9S9T4
            ProtClustDB:CLSN2917512 ArrayExpress:Q9S9T4 Genevestigator:Q9S9T4
            Uniprot:Q9S9T4
        Length = 110

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query:     1 MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGD-IDEVALANMLRRKIGYVEMMK 59
             M   KCR++A +I A   G+  V ++G++   + VIG+ +D   L   LR+K+G+ +++ 
Sbjct:    44 MRCDKCRSEALKIGAKTTGVTFVGIEGEEKDKVVVIGEGVDAACLVVRLRKKVGFADIIS 103

Query:    60 LDILD 64
             +  +D
Sbjct:   104 VTDVD 108


>TAIR|locus:2156253 [details] [associations]
            symbol:AT5G48290 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0030001
            HOGENOM:HOG000237719 EMBL:BT020300 EMBL:BT020469 IPI:IPI00541268
            RefSeq:NP_568695.1 UniGene:At.28683 ProteinModelPortal:Q5PNZ7
            SMR:Q5PNZ7 EnsemblPlants:AT5G48290.1 GeneID:834882
            KEGG:ath:AT5G48290 TAIR:At5g48290 eggNOG:NOG241974
            InParanoid:Q5PNZ7 OMA:NDIGEPV PhylomeDB:Q5PNZ7
            ProtClustDB:CLSN2684848 Genevestigator:Q5PNZ7 Uniprot:Q5PNZ7
        Length = 181

 Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query:     1 MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIG-DIDEVALANMLRRKIGYVEMMK 59
             M   K R KA      F G+ +V +KGD    +EV G ++D + L  +LR+K+ + E++ 
Sbjct:    11 MTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILRKKVAFAELVS 70

Query:    60 L 60
             +
Sbjct:    71 V 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.143   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        76   0.00091  102 3  11 22  0.45    28
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  447 (48 KB)
  Total size of DFA:  81 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.27u 0.13s 8.40t   Elapsed:  00:00:00
  Total cpu time:  8.27u 0.13s 8.40t   Elapsed:  00:00:00
  Start:  Fri May 10 03:06:08 2013   End:  Fri May 10 03:06:08 2013

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