BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043436
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K85|A Chain A, Crystal Structure Of A D-Glycero-D-Manno-Heptose
1-Phosphate Kinase From Bacteriodes Thetaiotaomicron
pdb|3K85|B Chain B, Crystal Structure Of A D-Glycero-D-Manno-Heptose
1-Phosphate Kinase From Bacteriodes Thetaiotaomicron
Length = 357
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 68 LHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDF-------YKVRHLVKVEIRPNLI 120
L +F ++ + P +GL SS V L +++ Y+ L EI
Sbjct: 94 LEPKSFKITTYNDAPAGSGLGTSSTXVVCILKAFIEWLSLPLGDYETSRLA-YEIE---- 148
Query: 121 LNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAEN 180
K+LG+ G QD+ A +GG + +F + + + K +D L ++Y
Sbjct: 149 ---RKDLGLSGGKQDQYAAAFGGFNYXEFLQNDLVIVNPLKXKRWIVDELESSXVLYFTG 205
Query: 181 PS-DSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLR 239
S S + + ++ +G++ I + ++ Q A + + A+L+ + + A ++ ++ +
Sbjct: 206 RSRSSAAIINEQKKNTSEGNQTAIEAXHKIKQSAIDTKLALLKGDVGEFARILGEGWENK 265
Query: 240 RRMFG 244
++ G
Sbjct: 266 KKXAG 270
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 41/252 (16%)
Query: 65 KIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124
K+DL + + +G+ S++ V A L + Y++ +L E+ + +
Sbjct: 90 KVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQL-NLTDEEVNLSAFVGEG 148
Query: 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYL------IYA 178
G +G D A YGGL+ +R+++ G ++KP I LYL I A
Sbjct: 149 GYHGTPSGA-DNTAATYGGLIL--YRRQN----GKSVFKP--IAFQQRLYLVVVGTGINA 199
Query: 179 ENPSDSGKVHSTVRQ------RWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELM 232
VH +Q R D I+S +E A+ + + +L +LM
Sbjct: 200 STAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQARE----------ALQKGDLQRLGQLM 249
Query: 233 NHNFDLRRRMFGDDVLGALNIEMVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQ-----V 286
N N DL R++ DV +V+ R +GA +K +G+G IA S V
Sbjct: 250 NANHDLCRQI---DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIV 306
Query: 287 ELLEDACRKAGF 298
+ L+ C +A F
Sbjct: 307 KGLKAKCPEAKF 318
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 48/236 (20%)
Query: 58 FKYCK---DNKIDL----HKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHL 110
FKYC N +D K F ++ + IP GL S++I + + FY + L
Sbjct: 75 FKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYN-KEL 133
Query: 111 VKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMD---FRK---EHMDELGHGIYKP 164
EI L EKE+ A + D Y G++ + FRK E + L +
Sbjct: 134 KDDEI-AKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKN----- 187
Query: 165 MDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKN 224
++YAE + + DE KE+ ++ E A+ KN
Sbjct: 188 ------CKFLIVYAEKRKKKTAELVNEVAKIENKDEI----FKEIDKVIDE---ALKIKN 234
Query: 225 YSKLAELMNHNFDLRRRMFGDDVLGALNIE------MVEIARRFGAASKFTGSGGA 274
+LM N +L ++ LNI +V+I RFG +K TG+GG
Sbjct: 235 KEDFGKLMTKNHELLKK---------LNISTPKLDRIVDIGNRFGFGAKLTGAGGG 281
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 48/236 (20%)
Query: 58 FKYCK---DNKIDL----HKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHL 110
FKYC N +D K F ++ + IP GL S++I + + FY + L
Sbjct: 78 FKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYN-KEL 136
Query: 111 VKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMD---FRK---EHMDELGHGIYKP 164
EI L EKE+ A + D Y G++ + FRK E + L +
Sbjct: 137 KDDEI-AKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKN----- 190
Query: 165 MDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKN 224
++YAE + + DE KE+ ++ E A+ KN
Sbjct: 191 ------CKFLIVYAEKRKKKTAELVNEVAKIENKDEI----FKEIDKVIDE---ALKIKN 237
Query: 225 YSKLAELMNHNFDLRRRMFGDDVLGALNIE------MVEIARRFGAASKFTGSGGA 274
+LM N +L ++ LNI +V+I RFG +K TG+GG
Sbjct: 238 KEDFGKLMTKNHELLKK---------LNISTPKLDRIVDIGNRFGFGAKLTGAGGG 284
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 45/237 (18%)
Query: 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFY----------KVRHLVKVEIRPNLILNAE 124
L+ D++IP +GL S+A+ A++ L + + K+ H ++++++
Sbjct: 100 LTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQG------- 152
Query: 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDS 184
A D +GG+V + R++ K D ++ +++
Sbjct: 153 -----AASPTDTYVSTFGGVVTIPERRK---------LKTPDCGIVIGDTGVFSSTKELV 198
Query: 185 GKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFG 244
V +R+ + D E + +S+ +++++ G+ +L +Y+ + L N N L
Sbjct: 199 ANVRQ-LRESYPDLIEPLXTSIGKISRI---GEQLVLSGDYASIGRLXNVNQGLL----- 249
Query: 245 DDVLGALNIEMVEI---ARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAG 297
D LG +E+ ++ AR GA +K TG+GG P + + +A AG
Sbjct: 250 -DALGVNILELSQLIYSARAAGAFGAKITGAGGGGCXVALTAPEKCNQVAEAVAGAG 305
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 45/237 (18%)
Query: 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFY----------KVRHLVKVEIRPNLILNAE 124
L+ D++IP +GL S+A+ A++ L + + K+ H ++++++
Sbjct: 100 LTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQG------- 152
Query: 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDS 184
A D +GG+V + R++ K D ++ +++
Sbjct: 153 -----AASPTDTYVSTFGGVVTIPERRK---------LKTPDCGIVIGDTGVFSSTKELV 198
Query: 185 GKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFG 244
V +R+ + D E + +S+ +++++ G+ +L +Y+ + L N N L
Sbjct: 199 ANVRQ-LRESYPDLIEPLXTSIGKISRI---GEQLVLSGDYASIGRLXNVNQGLL----- 249
Query: 245 DDVLGALNIEMVEI---ARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAG 297
D LG +E+ ++ AR GA +K TG+GG P + + +A AG
Sbjct: 250 -DALGVNILELSQLIYSARAAGAFGAKITGAGGGGCXVALTAPEKCNQVAEAVAGAG 305
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 67 DLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFY--KVRHLVKVEIRPNLILNAE 124
D G N+P GLS S++ L+ L Y K+ L KV L AE
Sbjct: 82 DYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKV----LLAKKAE 137
Query: 125 KE-LGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLL 170
E +G+ G+ D+ A V+G ++ F H + + I P D+ +L
Sbjct: 138 NEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEY-IPFPKDVSIL 183
>pdb|2GTH|A Chain A, Crystal Structure Of The Wildtype Mhv Coronavirus
Non-Structural Protein Nsp15
Length = 370
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 9 LEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDL 68
++ DD+ I + + D + H++ N+ GG+ L++ + + + K +L
Sbjct: 243 MDLDDDVFIAKYSLQDY----AFEHVVYGSFNQKIIGGLHLLIGLAR------RQQKSNL 292
Query: 69 HKGNFTLSYDTNIPR---QTGLSGSSAIVCAALDCLLD 103
F ++YD++I SGSS VC +D LLD
Sbjct: 293 VIQEF-VTYDSSIHSYFITDENSGSSKSVCTVIDLLLD 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,428,798
Number of Sequences: 62578
Number of extensions: 387593
Number of successful extensions: 838
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 15
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)