BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043436
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZC9|GLAK1_ARATH Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1
Length = 362
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 244/302 (80%), Positives = 274/302 (90%)
Query: 1 ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKY 60
NFWASVKLEPS+ LVIKPHP HDLVQF SL HL+NRLQNEGYYGGVRL+MAICKVF Y
Sbjct: 45 GNFWASVKLEPSEHLVIKPHPFHDLVQFTSLDHLLNRLQNEGYYGGVRLLMAICKVFRNY 104
Query: 61 CKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLI 120
CK+N I LH+ NF+LSYDTNIPRQTGLSGSSAIV AAL+CLLDFY VRHL+KV++RPN++
Sbjct: 105 CKENDIQLHQANFSLSYDTNIPRQTGLSGSSAIVSAALNCLLDFYNVRHLIKVQVRPNIV 164
Query: 121 LNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAEN 180
L+AEKELGIVAGLQDRVAQVYGGLVHMDF KEHMD+LGHGIY PMDI LLPPL+LIYAEN
Sbjct: 165 LSAEKELGIVAGLQDRVAQVYGGLVHMDFSKEHMDKLGHGIYTPMDISLLPPLHLIYAEN 224
Query: 181 PSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRR 240
PSDSGKVHS VRQRWLDGDEFIISSMKEV +A EG+ A+L K++SKL ELMN NFD+RR
Sbjct: 225 PSDSGKVHSMVRQRWLDGDEFIISSMKEVGSLAEEGRTALLNKDHSKLVELMNLNFDIRR 284
Query: 241 RMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300
RMFGD+ LGA+NIEMVE+ARR GAASKFTGSGGAV+ FCP GPSQV+LLE+ CRKAGF++
Sbjct: 285 RMFGDECLGAMNIEMVEVARRVGAASKFTGSGGAVVVFCPEGPSQVKLLEEECRKAGFTL 344
Query: 301 EP 302
+P
Sbjct: 345 QP 346
>sp|Q9LY82|GLAK2_ARATH Probable glucuronokinase 2 OS=Arabidopsis thaliana GN=GLCAK2 PE=2
SV=1
Length = 366
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/303 (76%), Positives = 267/303 (88%), Gaps = 1/303 (0%)
Query: 1 ANFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKY 60
NFWA KLEPSD L+IKPHP HDLVQF SL +L+ RL+N+GYYGGVRL+MAICKVF Y
Sbjct: 45 GNFWAWAKLEPSDHLLIKPHPFHDLVQFDSLDNLVYRLENDGYYGGVRLLMAICKVFRNY 104
Query: 61 CKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLI 120
CK+N I LH NFTLSYDTNIPRQTGLSGSSAIV AAL CLLDFY VR +++E+RPNLI
Sbjct: 105 CKENGIQLHDKNFTLSYDTNIPRQTGLSGSSAIVSAALSCLLDFYNVRQSIRIEVRPNLI 164
Query: 121 LNAEKELGIVAGLQDRVAQVYGG-LVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAE 179
LNAEKELGIVAGLQDRVAQVYGG LVHMDF KEHMD++G+GIY MDI+LLPPL+LIYAE
Sbjct: 165 LNAEKELGIVAGLQDRVAQVYGGGLVHMDFSKEHMDKVGYGIYTIMDINLLPPLHLIYAE 224
Query: 180 NPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLR 239
NPSDSGKVHSTVR+RWLDGDEFIISSM E+A++A EG+ A+L+K+YS L ELMN NFDLR
Sbjct: 225 NPSDSGKVHSTVRRRWLDGDEFIISSMAEIAKLAEEGRTALLKKDYSNLKELMNRNFDLR 284
Query: 240 RRMFGDDVLGALNIEMVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFS 299
R MFGD+ LGA+NIEMVE+AR+ GAA+KFTGSGGAV+ FCP GPSQV+LLE+ CRK+GF
Sbjct: 285 RSMFGDECLGAMNIEMVEVARKIGAAAKFTGSGGAVVVFCPEGPSQVKLLEEECRKSGFI 344
Query: 300 IEP 302
+EP
Sbjct: 345 VEP 347
>sp|Q9LNJ9|FKGP_ARATH Bifunctional fucokinase/fucose pyrophosphorylase OS=Arabidopsis
thaliana GN=FKGP PE=1 SV=2
Length = 1055
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 40/215 (18%)
Query: 80 NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQ 139
N+PR +GL SS + A + LL E L+L E+ +G G QD++
Sbjct: 824 NVPRGSGLGTSSILAAAVVKGLLQISNGDE--SNENIARLVLVLEQLMGTGGGWQDQIGG 881
Query: 140 VYGGLVHMDFRKEHMDELGHGIYKPMDIDLLP-------------PLYLIYAENPSDSGK 186
+Y G+ F GI PM + ++P L +++ + +
Sbjct: 882 LYPGI---KFTSSF-----PGI--PMRLQVVPLLASPQLISELEQRLLVVFTGQVRLAHQ 931
Query: 187 VHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM---- 242
V V R+L D +ISS+K + ++A G+ A++ ++ ++M+ + L + +
Sbjct: 932 VLHKVVTRYLQRDNLLISSIKRLTELAKSGREALMNCEVDEVGDIMSEAWRLHQELDPYC 991
Query: 243 ---FGDDVLGALNIEMVEIARRFGAASKFTGSGGA 274
F D ++ E ++ + + K G+GG
Sbjct: 992 SNEFVD--------KLFEFSQPYSSGFKLVGAGGG 1018
>sp|Q8U0F3|KIME_PYRFU Mevalonate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=mvk PE=3 SV=1
Length = 334
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 45/243 (18%)
Query: 72 NFTLSYDTNIPRQTGLSGSSAIVCAALDCL-----LDFYKVRHLVKVEIRPNLILNAEKE 126
+S + IP GL S+A+ A + + L+ K + K+ + L++
Sbjct: 100 GIKVSITSQIPVGAGLGSSAAVAVATIGAVSKLLGLELSK-EEIAKMGHKTELLVQ---- 154
Query: 127 LGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKP-MDIDLLPPLYLIYAENPSDSG 185
G +G+ V+ + G + + + EH+ P M++ P+ + Y + +
Sbjct: 155 -GASSGIDPTVSAIGGFIFYEKGKFEHL---------PFMEL----PIVVGYTGSSGPTK 200
Query: 186 KVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAIL-----EKNYSKLAELMNHNFDLRR 240
++ + VR+R+ + E I+ ++ + ++ + + IL E+ + +L LMN N L
Sbjct: 201 ELVAMVRKRYEEMPELIVPILEAMGKVVEKAKDVILSNVDKEEKFERLGVLMNINHGLL- 259
Query: 241 RMFGDDVLGALN---IEMVEIARRFGA-ASKFTGSGGA--VIAFCPNGPSQVELLEDACR 294
D LG E+V AR GA +K TG+GG + A PN +V A R
Sbjct: 260 -----DALGVSTKKLSELVYAARVAGALGAKITGAGGGGCMYALAPNKQREV---ATAIR 311
Query: 295 KAG 297
AG
Sbjct: 312 IAG 314
>sp|Q58487|KIME_METJA Mevalonate kinase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=mvk PE=1 SV=1
Length = 312
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 48/236 (20%)
Query: 58 FKYCK---DNKIDL----HKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHL 110
FKYC N +D K F ++ + IP GL S++I + + FY + L
Sbjct: 73 FKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYN-KEL 131
Query: 111 VKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMD---FRK---EHMDELGHGIYKP 164
EI L EKE+ A + D Y G++ + FRK E + L +
Sbjct: 132 KDDEI-AKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKN----- 185
Query: 165 MDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKN 224
++YAE + + DE KE+ ++ E A+ KN
Sbjct: 186 ------CKFLIVYAEKRKKKTAELVNEVAKIENKDEI----FKEIDKVIDE---ALKIKN 232
Query: 225 YSKLAELMNHNFDLRRRMFGDDVLGALNIE------MVEIARRFGAASKFTGSGGA 274
+LM N +L ++ LNI +V+I RFG +K TG+GG
Sbjct: 233 KEDFGKLMTKNHELLKK---------LNISTPKLDRIVDIGNRFGFGAKLTGAGGG 279
>sp|Q50559|KIME_METTH Mevalonate kinase OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=mvk PE=3 SV=1
Length = 303
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 46/220 (20%)
Query: 78 DTNIPRQTGLSGSSAIVCAALDCLLDFYKVR-----------HLVKVEIRPNLILNAEKE 126
+ IP +GL GSSA + AL LD Y R H V+V+++
Sbjct: 86 EMEIPAGSGL-GSSAALTVALIGALDRYHGRDHGPGETAARAHRVEVDVQG--------- 135
Query: 127 LGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGK 186
A D YGGLV++D ++ + + DL L + + + ++ +
Sbjct: 136 ---AASPLDTAISTYGGLVYLDSQRR---------VRQFEADL-GDLVIAHLDYSGETAR 182
Query: 187 VHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDD 246
+ + V +R+ + + M V + +L N L ELMN N L D
Sbjct: 183 MVAGVAERFRRFPDIMGRIMDTVESITNTAYRELLRNNTEPLGELMNLNQGLL------D 236
Query: 247 VLGALNIE---MVEIARRFGAA-SKFTGSGG--AVIAFCP 280
+G E MV AR GAA SK TG+GG ++IA CP
Sbjct: 237 SMGVSTRELSMMVYEARNAGAAGSKITGAGGGGSIIAHCP 276
>sp|P56091|GAL1_CANAX Galactokinase OS=Candida albicans GN=GAL1 PE=3 SV=1
Length = 515
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQ 134
L++D N+P GLS S+A A+ +L V+ + K ++ + + E +G+ G
Sbjct: 146 LTFDGNVPTGGGLSSSAAFCVASTLAILHANGVKDITKADLT-RITVVCEHYVGVNTGGM 204
Query: 135 DRVAQVYG 142
D+ A VYG
Sbjct: 205 DQCASVYG 212
>sp|Q6LUP9|KHSE_PHOPR Homoserine kinase OS=Photobacterium profundum GN=thrB PE=3 SV=1
Length = 318
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 56 VFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEI 115
VF + I+L + TL + N+P +GL S+ V AALD L F+ + L +VE+
Sbjct: 73 VFARELDKKNIELKPVSMTL--EKNMPIGSGLGSSACSVVAALDALNRFHNLP-LNEVEL 129
Query: 116 RPNLILNAEKELGIVAGLQ-DRVAQVY-GGLVHM 147
L L E E I L D VA Y GGL M
Sbjct: 130 ---LALMGEMEAKISGSLHYDNVAPCYLGGLQFM 160
>sp|Q9HDU2|GAL1_SCHPO Galactokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=gal1 PE=3 SV=1
Length = 519
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQ 134
L +D N+P GLS S+A A++ +L + + K ++ + + +E +G+ G
Sbjct: 150 LIFDGNVPTGGGLSSSAAFCVASILAILKANGINTITKEDLV-KISVVSEHYVGVNTGGM 208
Query: 135 DRVAQVYG 142
D+ A +YG
Sbjct: 209 DQCASIYG 216
>sp|B6EKY7|KHSE_ALISL Homoserine kinase OS=Aliivibrio salmonicida (strain LFI1238)
GN=thrB PE=3 SV=1
Length = 318
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 55 KVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVE 114
KVF + + + L + L + N+P +GL S+ + AALD L F+ + L ++E
Sbjct: 72 KVFARELETKNVTLKPIHMVL--EKNMPIGSGLGSSACSIVAALDALNQFHD-KPLTEME 128
Query: 115 IRPNLILNAEKELGIVAGLQ-DRVAQVY-GGLVHMDFRKEHMDELG 158
+ L L E E I G+ D VA Y GGL M ++ELG
Sbjct: 129 L---LALMGEMEGQISGGIHYDNVAPCYLGGLQLM------VEELG 165
>sp|Q7P192|HUTI_CHRVO Imidazolonepropionase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=hutI PE=3 SV=1
Length = 413
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 177 YAENPSDSGKVHSTVR-QRWLDGDEFIISSMKEVAQMAAEG 216
Y + ++ G + STVR RWLD +E ++S+ + + AEG
Sbjct: 99 YQQIAAEGGGIVSTVRATRWLDEEELALASLPRLKALMAEG 139
>sp|Q10088|SPEB1_SCHPO Putative agmatinase 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC11D3.09 PE=3 SV=1
Length = 394
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 151 KEHMDELGHGI-YKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQ--RWLDGDEFIISSMK 207
K D +G GI Y +DID+L P Y P +G +R R LDG + + + +
Sbjct: 291 KRIRDRVGDGIAYLSIDIDVLDPAYAPATGTPESAGWTTRELRTILRGLDGIKLVGADIV 350
Query: 208 EVA 210
EVA
Sbjct: 351 EVA 353
>sp|B5FAK1|KHSE_VIBFM Homoserine kinase OS=Vibrio fischeri (strain MJ11) GN=thrB PE=3
SV=1
Length = 318
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 64 NKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNA 123
NK ++ N + + N+P +GL S+ + AALD L F+ L VE+ L L
Sbjct: 79 NKKNVALKNVHMILEKNMPIGSGLGSSACSIVAALDALNQFHD-NPLNDVEL---LALMG 134
Query: 124 EKELGIVAGLQ-DRVAQVY-GGLVHMDFRKEHMDELG 158
E E I G+ D VA Y GGL M ++ELG
Sbjct: 135 EMEGQISGGIHYDNVAPCYLGGLQLM------VEELG 165
>sp|A7I3V2|KHSE_CAMHC Homoserine kinase OS=Campylobacter hominis (strain ATCC BAA-381 /
LMG 19568 / NCTC 13146 / CH001A) GN=thrB PE=3 SV=1
Length = 292
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 65 KIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124
K D NF ++ NIP GL SSA++ A+ YK+ ++I N ILN
Sbjct: 67 KFDTKLPNFRFVFENNIPFSRGLGSSSAVIVGAIASA---YKI---CGIKIDKNKILN-- 118
Query: 125 KELGIVAGLQDRVA-QVYGGLV 145
E + D +A +GG V
Sbjct: 119 -EALVYENHPDNIAPAAFGGFV 139
>sp|Q8GX29|SKI25_ARATH F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25
PE=1 SV=1
Length = 395
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 128 GIVAGLQDRVAQVYGGLVHM-DFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGK 186
++ GL D ++++ LVH +Y P + P LY ++ ++ SD+G+
Sbjct: 34 ALIEGLPDHISEICLSLVHRPSLLSAVCTRWRRLLYSP-EFPSFPSLYALFVDSTSDTGR 92
Query: 187 VHSTVR 192
V+ +VR
Sbjct: 93 VNPSVR 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,192,419
Number of Sequences: 539616
Number of extensions: 4965553
Number of successful extensions: 11131
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 11123
Number of HSP's gapped (non-prelim): 27
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)