Query 043436
Match_columns 302
No_of_seqs 182 out of 1615
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1577 ERG12 Mevalonate kinas 100.0 1.3E-40 2.7E-45 292.5 30.4 265 2-301 29-300 (307)
2 TIGR01220 Pmev_kin_Gr_pos phos 100.0 5.6E-40 1.2E-44 299.3 30.3 293 2-302 30-351 (358)
3 COG0153 GalK Galactokinase [Ca 100.0 5.5E-39 1.2E-43 284.4 26.2 269 2-295 52-365 (390)
4 PLN02677 mevalonate kinase 100.0 3.5E-37 7.6E-42 280.9 28.9 280 2-300 31-369 (387)
5 COG2605 Predicted kinase relat 100.0 3E-37 6.5E-42 261.1 25.1 267 2-299 36-316 (333)
6 PRK05101 galactokinase; Provis 100.0 3.5E-36 7.7E-41 276.6 27.7 267 2-294 49-357 (382)
7 PRK05322 galactokinase; Provis 100.0 4.4E-36 9.6E-41 276.2 26.8 270 2-295 48-363 (387)
8 PRK00555 galactokinase; Provis 100.0 1.3E-35 2.8E-40 271.0 29.6 265 2-293 31-336 (363)
9 PRK13412 fkp bifunctional fuco 100.0 1.7E-35 3.6E-40 291.4 30.0 277 4-297 650-952 (974)
10 TIGR00549 mevalon_kin mevalona 100.0 2.1E-35 4.5E-40 261.1 24.9 242 2-278 25-273 (273)
11 PLN02865 galactokinase 100.0 1.4E-34 3.1E-39 265.9 28.5 274 2-294 59-391 (423)
12 TIGR00131 gal_kin galactokinas 100.0 4.5E-35 9.8E-40 270.4 25.3 268 2-293 46-360 (386)
13 PTZ00298 mevalonate kinase; Pr 100.0 8.2E-34 1.8E-38 256.5 25.6 233 47-296 72-309 (328)
14 PRK03926 mevalonate kinase; Pr 100.0 7.4E-33 1.6E-37 248.2 28.4 225 46-299 56-285 (302)
15 PTZ00290 galactokinase; Provis 100.0 1.2E-32 2.6E-37 255.7 27.3 269 2-293 66-430 (468)
16 PRK03817 galactokinase; Provis 100.0 7.2E-32 1.6E-36 246.3 28.7 266 2-295 29-326 (351)
17 PLN02521 galactokinase 100.0 1.1E-31 2.4E-36 252.1 27.0 277 2-296 77-462 (497)
18 KOG1511 Mevalonate kinase MVK/ 100.0 5.8E-29 1.3E-33 215.3 26.7 213 73-300 132-367 (397)
19 TIGR01219 Pmev_kin_ERG8 phosph 100.0 1.1E-28 2.4E-33 227.9 28.7 297 2-301 29-437 (454)
20 TIGR01920 Shik_kin_archae shik 100.0 6.3E-27 1.4E-31 204.6 22.7 209 48-299 46-257 (261)
21 PRK03188 4-diphosphocytidyl-2- 100.0 2.2E-27 4.8E-32 212.3 19.4 257 2-299 10-279 (300)
22 PRK00128 ipk 4-diphosphocytidy 100.0 1.8E-26 4E-31 205.2 22.2 208 45-297 63-273 (286)
23 PLN02451 homoserine kinase 99.9 2.5E-26 5.5E-31 209.5 22.2 222 47-295 114-340 (370)
24 PRK14615 4-diphosphocytidyl-2- 99.9 2.2E-25 4.7E-30 198.4 20.1 261 2-300 16-291 (296)
25 PRK14616 4-diphosphocytidyl-2- 99.9 6.1E-25 1.3E-29 195.2 22.2 250 2-296 13-273 (287)
26 PRK01123 shikimate kinase; Pro 99.9 4.4E-25 9.5E-30 195.6 21.1 207 47-296 56-266 (282)
27 PRK14608 4-diphosphocytidyl-2- 99.9 5.2E-25 1.1E-29 195.5 21.5 248 2-296 16-278 (290)
28 PRK14611 4-diphosphocytidyl-2- 99.9 6.2E-25 1.3E-29 193.9 20.7 237 2-281 11-254 (275)
29 TIGR00154 ispE 4-diphosphocyti 99.9 1E-24 2.2E-29 193.9 22.2 252 2-294 11-272 (293)
30 PRK14614 4-diphosphocytidyl-2- 99.9 5.4E-25 1.2E-29 194.7 20.2 246 2-296 13-269 (280)
31 PRK14613 4-diphosphocytidyl-2- 99.9 1E-24 2.2E-29 194.1 20.2 254 2-296 8-286 (297)
32 PRK01212 homoserine kinase; Pr 99.9 9.4E-25 2E-29 195.6 19.8 216 46-296 61-279 (301)
33 TIGR00191 thrB homoserine kina 99.9 8.4E-25 1.8E-29 195.8 19.2 201 46-281 59-266 (302)
34 PRK02534 4-diphosphocytidyl-2- 99.9 1.8E-24 3.9E-29 194.5 20.7 219 46-296 65-290 (312)
35 COG0083 ThrB Homoserine kinase 99.9 4.2E-24 9.1E-29 186.3 20.8 219 45-299 56-281 (299)
36 COG1947 IspE 4-diphosphocytidy 99.9 3.9E-24 8.4E-29 185.4 19.6 248 2-295 13-271 (289)
37 PRK14612 4-diphosphocytidyl-2- 99.9 3.5E-24 7.6E-29 189.3 18.2 244 2-297 12-265 (276)
38 PRK14609 4-diphosphocytidyl-2- 99.9 3.5E-24 7.6E-29 188.0 16.6 235 2-287 10-257 (269)
39 PRK00343 ipk 4-diphosphocytidy 99.9 8.9E-23 1.9E-27 179.4 21.2 239 2-296 16-262 (271)
40 PRK14610 4-diphosphocytidyl-2- 99.9 8.1E-23 1.7E-27 180.8 18.7 244 2-296 13-270 (283)
41 PTZ00299 homoserine kinase; Pr 99.9 5.6E-22 1.2E-26 178.1 20.7 205 45-280 59-273 (336)
42 TIGR00144 beta_RFAP_syn beta-R 99.9 5.3E-21 1.1E-25 172.1 24.9 230 46-299 63-308 (324)
43 PRK00650 4-diphosphocytidyl-2- 99.9 1.7E-21 3.7E-26 170.8 18.0 232 2-293 10-254 (288)
44 PRK05905 hypothetical protein; 99.9 1.6E-20 3.5E-25 162.4 17.3 228 2-280 10-254 (258)
45 COG1685 Archaeal shikimate kin 99.8 3.8E-19 8.3E-24 150.0 21.6 212 46-300 50-264 (278)
46 TIGR01240 mevDPdecarb diphosph 99.8 1.6E-17 3.4E-22 147.8 25.9 221 47-295 66-302 (305)
47 PRK04181 4-diphosphocytidyl-2- 99.8 7.2E-19 1.6E-23 152.8 15.7 168 2-192 10-187 (257)
48 KOG0631 Galactokinase [Carbohy 99.8 1.5E-18 3.3E-23 157.2 17.1 241 43-296 112-457 (489)
49 COG1907 Predicted archaeal sug 99.7 1E-14 2.2E-19 124.6 22.2 213 71-299 70-295 (312)
50 PF00288 GHMP_kinases_N: GHMP 99.6 3.1E-16 6.7E-21 108.4 4.9 67 74-143 1-67 (67)
51 PLN02407 diphosphomevalonate d 99.6 1.4E-13 3E-18 122.5 21.1 201 74-295 105-329 (343)
52 COG3407 MVD1 Mevalonate pyroph 99.6 6.3E-13 1.4E-17 117.3 23.7 228 47-299 71-310 (329)
53 KOG4644 L-fucose kinase [Carbo 99.6 1.3E-13 2.8E-18 125.4 18.0 216 71-296 690-922 (948)
54 COG4542 PduX Protein involved 99.6 2.1E-13 4.6E-18 114.1 17.1 172 70-273 81-256 (293)
55 KOG2833 Mevalonate pyrophospha 99.5 2E-11 4.3E-16 105.3 22.1 197 72-295 105-327 (395)
56 COG3890 ERG8 Phosphomevalonate 99.4 7E-12 1.5E-16 106.2 17.0 204 83-300 106-321 (337)
57 COG1829 Predicted archaeal kin 99.4 6.1E-11 1.3E-15 101.1 19.8 189 71-292 73-264 (283)
58 KOG4519 Phosphomevalonate kina 99.3 1.8E-10 3.9E-15 100.0 16.5 254 47-300 86-437 (459)
59 PF08544 GHMP_kinases_C: GHMP 99.2 3.4E-11 7.4E-16 87.0 7.6 80 216-298 1-84 (85)
60 KOG1537 Homoserine kinase [Ami 99.1 2.9E-10 6.3E-15 95.8 10.1 213 66-300 88-338 (355)
61 PF03460 NIR_SIR_ferr: Nitrite 71.4 12 0.00025 25.2 4.8 43 252-296 25-69 (69)
62 TIGR00162 conserved hypothetic 66.5 23 0.00051 29.3 6.5 67 48-125 93-159 (188)
63 COG2221 DsrA Dissimilatory sul 65.0 10 0.00022 33.9 4.3 50 249-300 43-94 (317)
64 PF01963 TraB: TraB family; I 49.0 63 0.0014 27.7 6.6 82 210-302 173-258 (259)
65 PRK07417 arogenate dehydrogena 43.0 1.1E+02 0.0023 26.9 7.2 42 201-242 236-277 (279)
66 PRK00068 hypothetical protein; 42.3 66 0.0014 33.7 6.3 41 202-242 926-966 (970)
67 PF11823 DUF3343: Protein of u 41.3 97 0.0021 21.0 5.3 45 255-300 17-66 (73)
68 TIGR00161 conserved hypothetic 40.5 1.4E+02 0.0031 25.7 7.3 66 49-125 150-215 (238)
69 PRK07502 cyclohexadienyl dehyd 38.0 1.4E+02 0.003 26.5 7.2 41 202-242 248-288 (307)
70 PRK08507 prephenate dehydrogen 37.8 1.3E+02 0.0028 26.2 6.9 37 204-240 237-273 (275)
71 PRK06545 prephenate dehydrogen 33.2 3.8E+02 0.0083 24.5 10.8 41 202-242 239-279 (359)
72 COG4833 Predicted glycosyl hyd 30.3 1.3E+02 0.0028 26.6 5.3 74 48-125 297-372 (377)
73 PF09383 NIL: NIL domain; Int 29.7 67 0.0014 21.9 3.0 46 255-301 19-74 (76)
74 TIGR02066 dsrB sulfite reducta 28.4 95 0.0021 28.4 4.5 47 251-299 44-92 (341)
75 TIGR02064 dsrA sulfite reducta 27.8 98 0.0021 29.0 4.5 10 285-294 172-181 (402)
76 PF02153 PDH: Prephenate dehyd 27.1 2.1E+02 0.0046 24.7 6.4 28 206-233 230-257 (258)
77 PF06153 DUF970: Protein of un 25.8 1.4E+02 0.003 22.4 4.1 41 255-296 16-63 (109)
78 PRK11861 bifunctional prephena 24.9 2.8E+02 0.006 28.0 7.5 43 200-242 176-218 (673)
79 COG1938 Archaeal enzymes of AT 24.1 1.1E+02 0.0024 26.5 3.8 64 49-125 153-218 (244)
80 COG2896 MoaA Molybdenum cofact 23.6 1.6E+02 0.0035 26.7 5.0 51 248-299 43-113 (322)
81 PF01709 Transcrip_reg: Transc 23.0 2.5E+02 0.0055 24.1 5.9 46 252-301 144-191 (234)
82 COG0217 Uncharacterized conser 21.1 1.8E+02 0.004 25.1 4.5 42 255-300 152-194 (241)
83 PF02863 Arg_repressor_C: Argi 20.6 1.1E+02 0.0023 20.8 2.5 28 266-295 42-69 (70)
No 1
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=1.3e-40 Score=292.52 Aligned_cols=265 Identities=25% Similarity=0.389 Sum_probs=225.6
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEe
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDT 79 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s 79 (302)
|++++|++++.++ +.+.+.++... . +.. ++...|+..++..+.+++.. . +..||+++|.|
T Consensus 29 ~~~~~v~~~~s~~~~~~i~~~~~~~~---~----~~~-------~~~~~~~~~~v~~~~e~~~~--~--~~~~~~l~I~S 90 (307)
T COG1577 29 DLRVTVTISESDSNKIVIESSDLKSS---T----LER-------DEDEGYIQAAVRLASELLNQ--S--SLKPFSLEIDS 90 (307)
T ss_pred eeeEEEEEEecCCCcEEEeccCCCCc---c----ccc-------cccchHHHHHHHHHHHHhcc--c--CCCCeEEEEec
Confidence 6899999999887 77777766433 0 111 11237888888888877642 1 23689999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccC
Q 043436 80 NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELG 158 (302)
Q Consensus 80 ~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g 158 (302)
+||+|+|||||||++||++.|++.+|+.+ ++++++++++..+|. .+|.++|+ |.++++|||++++..+.
T Consensus 91 ~iP~g~GLGSSAAVsva~i~al~~~~g~~--ls~~~l~~la~~~e~~vqG~~Sg~-D~a~~~~gg~v~~~~~~------- 160 (307)
T COG1577 91 EIPIGAGLGSSAAVSVAVIKALSAYFGVE--LSPEELAKLANKVELIVQGKASGI-DIATITYGGLVAFKKGF------- 160 (307)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHcCCCCcc-cceEEEeCCEEEEecCC-------
Confidence 99999999999999999999999999999 999999999999999 66666665 99999999999976221
Q ss_pred cccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 043436 159 HGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDL 238 (302)
Q Consensus 159 ~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~ 238 (302)
.++++.++.++.++|.+++.+.+|++++..++.++++.++.....++.+.+++.++..++.++|.+.|+++|+.+|.+
T Consensus 161 --~~~~l~~~~~~~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~L 238 (307)
T COG1577 161 --DFEKLEIELLGTLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGL 238 (307)
T ss_pred --CccccccccCCeEEEEEcCCcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 366666654435999999999999999999998887778888889999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHHHHHcCCccc
Q 043436 239 RRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDACRKAGFSIE 301 (302)
Q Consensus 239 ~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~g~~~~ 301 (302)
+..+. +++|++| |++.++++|+ |+|+|||| ||+|+|+++ ++.++++.++|.++|+..+
T Consensus 239 L~~Lg----Vs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~-~~~~~~l~~~~~~~~i~~~ 300 (307)
T COG1577 239 LKALG----VSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKN-EEIAETLSNRLEKAGIALL 300 (307)
T ss_pred HHhcC----cCcHHHHHHHHHHHhcCccccccccCCCCceEEEEecc-chHHHHHHHHHHhcCcccc
Confidence 99996 9999999 9999999999 89999999 399999986 5568999999999998643
No 2
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=5.6e-40 Score=299.29 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=229.5
Q ss_pred CceEEEEEeeCCc--eeEeccCCCC-cceeccch-hhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHD-LVQFQSLH-HLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSY 77 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i 77 (302)
|+|++|+++++++ +.+.+.++.. .+.|+... .+... ......|++|++.+++.+.+++...+..+ +|+++.|
T Consensus 30 ~~~~~v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~i~~~~~~~~~~~~~~--~g~~~~i 105 (358)
T TIGR01220 30 DRFVTVTVEDADGAADVIISSDLGPQPVGWRRHDGRLVVR--DPDARSALAYVVSAIETVERYAGERNQKL--PALHLSV 105 (358)
T ss_pred cCcEEEEEEeCCCCceEEEecCCCCCceEEEecCCceeec--ccccccchHHHHHHHHHHHHHHHhcCCCC--CceEEEE
Confidence 6899999999876 6777776643 34454322 11000 01123589999999999988886655543 5899999
Q ss_pred EeCCCCC----CCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEe-ecc
Q 043436 78 DTNIPRQ----TGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMD-FRK 151 (302)
Q Consensus 78 ~s~iP~~----~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~-~~~ 151 (302)
.|++|.+ +|||||||++||++.|++.+++++ +++++++++|+.+|. .+|.. |.+|+++++|||++.+. |++
T Consensus 106 ~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~--l~~~~l~~lA~~~E~~~~g~~-sg~D~~a~~~GG~i~~~~~~~ 182 (358)
T TIGR01220 106 SSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLE--LSNDEIFKLAMLATAELQPKG-SCGDIAASTYGGWIAYSTFDH 182 (358)
T ss_pred ecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhhhCCCC-CcchhhhhhhCCEEEEecCCH
Confidence 9999983 799999999999999999999999 999999999999999 65554 44599999999999875 544
Q ss_pred cccccc----C-----ccc-----ccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHH
Q 043436 152 EHMDEL----G-----HGI-----YKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQ 217 (302)
Q Consensus 152 ~~~~~~----g-----~~~-----~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (302)
.++... . ... +.+++.+.-.+++|++|+.+++|++++..+...+...++.+...++++.+++.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~~~v~~V~~~~~~~~~~~~~~l~~~~~i~~~~~ 262 (358)
T TIGR01220 183 DWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTASLVSDVHRRKWRGSASYQRFLETSTDCVESAI 262 (358)
T ss_pred HHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcCcHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 322100 0 001 23333221116999999999999999999988776666666677888999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHhhcC--CCCCCCccHH-HHHHHHHcCCceeecCCCc--eEEEEeeCCcchHHHHHHH
Q 043436 218 AAILEKNYSKLAELMNHNFDLRRRMFG--DDVLGALNIE-MVEIARRFGAASKFTGSGG--AVIAFCPNGPSQVELLEDA 292 (302)
Q Consensus 218 ~al~~~d~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~-l~~~a~~~g~gaklsGaGg--~~~al~~~~~~~~~~~~~~ 292 (302)
++|..+|++.|+++|+++|.+++.+.+ ...+++|.++ |++.+++.|+++|+||||| |+|+++++ +++++++.++
T Consensus 263 ~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~~ga~aKlsGAGgGg~~ial~~~-~~~~~~~~~~ 341 (358)
T TIGR01220 263 TAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEAYGGAAKPSGAGGGDCGIAILDA-EADITHVRQR 341 (358)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhhcCceecCCCCCCcCEEEEEeCC-chhHHHHHHH
Confidence 999999999999999999999998841 1257899998 9999999988999999994 99999986 6788999999
Q ss_pred HHHcCCcccC
Q 043436 293 CRKAGFSIEP 302 (302)
Q Consensus 293 l~~~g~~~~~ 302 (302)
|+++|+..+|
T Consensus 342 ~~~~G~~~l~ 351 (358)
T TIGR01220 342 WETAGILPLP 351 (358)
T ss_pred HHHCCCeEee
Confidence 9999998764
No 3
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-39 Score=284.38 Aligned_cols=269 Identities=21% Similarity=0.303 Sum_probs=202.7
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCc-ceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDL-VQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYD 78 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~ 78 (302)
|..+++.+++++| ++++|.+++.. ..+...+.+.+ .+-.+|.||+++++..+.. .|..+ .|+++.|.
T Consensus 52 n~~t~v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~~----~~~~~W~nYvkgvi~~l~~----~g~~~--~G~~i~i~ 121 (390)
T COG0153 52 NYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLLDIAK----EKIDDWANYVKGVIKALQK----RGYAF--TGLDIVIS 121 (390)
T ss_pred ecceEEEEEEccCceEEEEeCCCccccceeecchhhcc----cccchhhhhHHHHHHHHHh----cCCCc--CCeeEEEe
Confidence 6789999999987 88999988633 33333333321 1125799999999887765 57766 59999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecC---eeEEeeccccc
Q 043436 79 TNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGG---LVHMDFRKEHM 154 (302)
Q Consensus 79 s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg---~~~~~~~~~~~ 154 (302)
|+||.|+|||||||+.||++.++.++++++ +++.+++++++.+|+ ++|.+||+|||+++.||. .+++++.+ +
T Consensus 122 gnIP~GaGLSSSAAleva~~~al~~l~~~~--~~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~--l 197 (390)
T COG0153 122 GNIPIGAGLSSSAALEVAVALALQRLFNLP--LDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRT--L 197 (390)
T ss_pred cCCCCCCCcCchHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEccc--C
Confidence 999999999999999999999999999999 999999999999998 999999999999999995 55555542 1
Q ss_pred cccCcccccccCCCCCC-CEEEEEeCCCCChH------------HHHHHHHH----hhhc--------------CcHHHH
Q 043436 155 DELGHGIYKPMDIDLLP-PLYLIYAENPSDSG------------KVHSTVRQ----RWLD--------------GDEFII 203 (302)
Q Consensus 155 ~~~g~~~~~~l~~~~~~-~~~l~~~~~~~~t~------------~~~~~~~~----~~~~--------------~~~~~~ 203 (302)
.+++++++... .++|+++++++.+. ++.+.+.. +++- .+...+
T Consensus 198 ------~~~~~~~p~~~~~ivI~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~r 271 (390)
T COG0153 198 ------EYEPVPFPVGGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIAR 271 (390)
T ss_pred ------ceEEeccCccceEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHH
Confidence 35555443221 57788888765321 11111111 1100 111122
Q ss_pred HHHHHH--HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHc-CC-ceeecCCC--ceEE
Q 043436 204 SSMKEV--AQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRF-GA-ASKFTGSG--GAVI 276 (302)
Q Consensus 204 ~~~~~i--~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~-g~-gaklsGaG--g~~~ 276 (302)
+..|.+ +.++.++.+||+++|+.+||++|++||.++++.| ++++|++| |+++|... |+ |+|||||| ||+|
T Consensus 272 Ra~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddy---evt~pElD~lve~a~~~~G~~GaRmTGaGfGGc~I 348 (390)
T COG0153 272 RARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDY---EVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVI 348 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHcCCcccceecCCCCCceEE
Confidence 233333 3468899999999999999999999999999886 79999999 99999865 76 99999999 5999
Q ss_pred EEeeCCcchHHHHHHHHHH
Q 043436 277 AFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 277 al~~~~~~~~~~~~~~l~~ 295 (302)
+|++ .+.++.+.+.+.+
T Consensus 349 aLv~--~~~v~~~~e~v~~ 365 (390)
T COG0153 349 ALVP--NDDVEAVAEAVAE 365 (390)
T ss_pred EEec--hhhHHHHHHHHHH
Confidence 9998 5667777776653
No 4
>PLN02677 mevalonate kinase
Probab=100.00 E-value=3.5e-37 Score=280.88 Aligned_cols=280 Identities=19% Similarity=0.275 Sum_probs=218.8
Q ss_pred CceEEEEEeeCC-----c-eeEeccCCCCcceeccchhhhhhhc---cCCccchHHHHHHHHHHHHHHhHhcCCC-----
Q 043436 2 NFWASVKLEPSD-----D-LVIKPHPVHDLVQFQSLHHLMNRLQ---NEGYYGGVRLVMAICKVFFKYCKDNKID----- 67 (302)
Q Consensus 2 d~~~~v~~~~~~-----~-~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~g~~----- 67 (302)
|+|+|+++++++ . +.+...+++-..+|+..+ +..... .......+.++..++..+.+++.+.+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 109 (387)
T PLN02677 31 DLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLAR-IKEALPDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIW 109 (387)
T ss_pred eceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHh-hhhhhccccccccccccccCHHHHHHHHHHHHhcCCcchhhh
Confidence 789999998742 2 555556666556666443 211100 0011233467777777777776543322
Q ss_pred --------------C-CCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhC-CCCCC-------------CcccHhH
Q 043436 68 --------------L-HKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYK-VRHLV-------------KVEIRPN 118 (302)
Q Consensus 68 --------------~-~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~-~~~~l-------------s~~el~~ 118 (302)
+ +..++++.|+|+||+|+|||||||++||++.|++.+++ ++ + +.+++.+
T Consensus 110 ~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~--~~~~~~~~~~~~~~~~~~i~~ 187 (387)
T PLN02677 110 LSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSIS--VSTGGNGWSSLDETDLELVNK 187 (387)
T ss_pred hhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcc--cccccccccccChhHHHHHHH
Confidence 0 02469999999999999999999999999999999998 33 3 2257889
Q ss_pred HHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCC-CEEEEEeCCCCChHHHHHHHHHhhh
Q 043436 119 LILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLP-PLYLIYAENPSDSGKVHSTVRQRWL 196 (302)
Q Consensus 119 la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~l~~~~~~~~t~~~~~~~~~~~~ 196 (302)
+|..+|. ++|.+||+ |+++++|||++.++ +. ...+++.. .+ +++|++|+.+++|++++..|+.++.
T Consensus 188 ~A~~~E~~~hG~pSGi-D~a~s~~Gg~I~f~--~~--------~~~~l~~~-~~l~llv~dTgv~~sT~~lV~~V~~~~~ 255 (387)
T PLN02677 188 WAFEGEKIIHGKPSGI-DNTVSTYGNMIKFK--SG--------ELTRLQSN-MPLKMLITNTRVGRNTKALVAGVSERAL 255 (387)
T ss_pred HHHHHHHHHhCCCCch-hHHHHhcCCeEEEc--CC--------CceecCCC-CCceEEEEECCCCCcHHHHHHHHHHHHH
Confidence 9999999 99999998 99999999998864 21 13344321 12 7999999999999999999999888
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCce
Q 043436 197 DGDEFIISSMKEVAQMAAEGQAAILE---------KNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAAS 266 (302)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~~~al~~---------~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~ga 266 (302)
..|+.+...++.+.+++.++.++|.+ +|++.++++|+.||.+|+.|. ++++.+| +++.+++++.++
T Consensus 256 ~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LG----VS~~~le~iv~~a~~~~~~A 331 (387)
T PLN02677 256 RHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMG----VSHSSIETVLRTTLKYKLVS 331 (387)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHcCCcc
Confidence 88888888899999999999999998 569999999999999999996 9999999 999999986699
Q ss_pred eecCCC--ceEEEEeeC--CcchHHHHHHHHHHcCCcc
Q 043436 267 KFTGSG--GAVIAFCPN--GPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 267 klsGaG--g~~~al~~~--~~~~~~~~~~~l~~~g~~~ 300 (302)
|+|||| ||+|+|.++ +++.++++.++|++.|+++
T Consensus 332 KlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~G~~~ 369 (387)
T PLN02677 332 KLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESSGFQC 369 (387)
T ss_pred ccccCCCCCEEEEEcccccchhHHHHHHHHHHHCCCeE
Confidence 999999 399999974 2457899999999999874
No 5
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=3e-37 Score=261.06 Aligned_cols=267 Identities=25% Similarity=0.406 Sum_probs=217.2
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHH-HHHHhHhcCCCCCCCceEEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKV-FFKYCKDNKIDLHKGNFTLSYD 78 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~g~~~~~~g~~i~i~ 78 (302)
|+|+|+++.|.-+ +++.. +...+ .++.. .. .+. ..++.+++. ++++ .|. ..++|...
T Consensus 36 dky~y~~i~~~~d~~I~~~~----~~~~~--v~~~~--~~----~h~-~~~~~~l~r~~l~~---~g~----~~~el~~~ 95 (333)
T COG2605 36 DKYIYVTIEKGFDDEIRVRY----DRTEF--VKSYL--EN----EHK-PLVVESLKRDFLEF---NGG----TPIELHTQ 95 (333)
T ss_pred eeEEEEEEccCCCceEEEec----chHHh--hhhhH--hh----cCc-hHHHHHHHHHHHhh---cCC----CceEEEEe
Confidence 7899999998755 44431 11111 11110 00 111 566766664 2221 222 23999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeecccccccc
Q 043436 79 TNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDEL 157 (302)
Q Consensus 79 s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~ 157 (302)
+|+|+|+|||||||++||++.|+..|-+.. +++++|+++|..+|+ .++..+|.|||++++|||+++++|+.+
T Consensus 96 ~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~--~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~~----- 168 (333)
T COG2605 96 SDAPPGSGLGSSSAFVVALLNALHAWKGES--LGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRGN----- 168 (333)
T ss_pred cCCCCCCCCCchHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEEcCC-----
Confidence 999999999999999999999999999999 999999999999999 999999999999999999999998765
Q ss_pred CcccccccCCC-----CCC-CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 043436 158 GHGIYKPMDID-----LLP-PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAEL 231 (302)
Q Consensus 158 g~~~~~~l~~~-----~~~-~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~ 231 (302)
|+..+.|+++. .+. +++|++||..+.+++++.+......+.+++..+.+++|.+.+.+++++|-.+|+.+|+++
T Consensus 169 ~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e~~~~mk~~A~~~~~al~~nd~~~f~~~ 248 (333)
T COG2605 169 GEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDALVRNDIPEFGQI 248 (333)
T ss_pred CcEEEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 23356777663 223 899999999999999988776666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc--eEEEEeeCCcchHHHHHHHHHHcCCc
Q 043436 232 MNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG--AVIAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg--~~~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
|+.+|+..+.+. ..++++.+| +++.|++.|+ |+|++|||| .++.+|+ +.....+.++|++....
T Consensus 249 l~~gW~~KK~ls--~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~--p~k~~~l~r~l~~~~~~ 316 (333)
T COG2605 249 LDRGWEAKKKLS--SRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCD--PSKRNELARALEKEQGF 316 (333)
T ss_pred HHhHHHhhhhhc--cCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeC--ccchHHHHHHHHHhcCC
Confidence 999999999998 789999999 9999999999 999999993 7888887 78889999999877554
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=3.5e-36 Score=276.56 Aligned_cols=267 Identities=18% Similarity=0.248 Sum_probs=197.4
Q ss_pred CceEEEEEeeCCc--eeEeccCCCC-cceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHD-LVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYD 78 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~ 78 (302)
|++++|+++++++ +.+.+..... ...|+....+.. .+...|.+|+++++..+... +.. ..|++|.|.
T Consensus 49 d~~~~v~i~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~----~~~~~w~~yv~~~~~~l~~~----~~~--~~g~~i~i~ 118 (382)
T PRK05101 49 DYQTVISCAKRDDRIVRVIAADYDNQQDEFSLDAPIVP----HPEQQWANYVRGVVKHLQER----NPD--FGGADLVIS 118 (382)
T ss_pred cccEEEEEEECCCCEEEEEECCCCCCceEEecCccccc----CCCCchHHHHHHHHHHHHHh----CCC--CCCeEEEEe
Confidence 7899999999876 7777766532 223433221111 11246899999999877652 222 258999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecC---eeEEeeccccc
Q 043436 79 TNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGG---LVHMDFRKEHM 154 (302)
Q Consensus 79 s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg---~~~~~~~~~~~ 154 (302)
|+||+++|||||||++||++.|++.+++++ +++++++++|..+|+ ++|.+||.+||+++.+|| ++++++.+ +
T Consensus 119 ~~iP~gaGLgSSAA~~va~~~al~~~~~~~--l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~--~ 194 (382)
T PRK05101 119 GNVPQGAGLSSSASLEVAVGQTFQQLYHLP--LSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRS--L 194 (382)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCC--C
Confidence 999999999999999999999999999999 999999999999999 999999999999999998 34444322 1
Q ss_pred cccCcccccccCCC-CCCCEEEEEeCCCC-------ChHHH-----HH--HHHHhhhc------------CcHHHHHHHH
Q 043436 155 DELGHGIYKPMDID-LLPPLYLIYAENPS-------DSGKV-----HS--TVRQRWLD------------GDEFIISSMK 207 (302)
Q Consensus 155 ~~~g~~~~~~l~~~-~~~~~~l~~~~~~~-------~t~~~-----~~--~~~~~~~~------------~~~~~~~~~~ 207 (302)
.+.+++++ .+ .++|++|+.++ .|+.. .. .++..++. .+....+.++
T Consensus 195 ------~~~~~~~~~~~-~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h 267 (382)
T PRK05101 195 ------ETKAVPMPEGV-AVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAELDPVVAKRARH 267 (382)
T ss_pred ------ceEEeeCCCCc-EEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcCCHHHHHHHHhhCCHHHHHHHHH
Confidence 23344332 12 68999999877 34431 10 11111111 1122334555
Q ss_pred HHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHc-CC--ceeecCCC--ceEEEEe
Q 043436 208 EVA--QMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRF-GA--ASKFTGSG--GAVIAFC 279 (302)
Q Consensus 208 ~i~--~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~-g~--gaklsGaG--g~~~al~ 279 (302)
.+. +++.+++.+|+++|++.||++|+++|.++++.+ .+++|++| |++.+++. |+ |+|||||| ||+++++
T Consensus 268 ~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~---~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~ 344 (382)
T PRK05101 268 VITENARTLEAASALAAGDLKRMGELMAESHASMRDDF---EITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALV 344 (382)
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhc---CCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEE
Confidence 565 478999999999999999999999999998654 69999999 99999997 86 57999999 4999999
Q ss_pred eCCcchHHHHHHHHH
Q 043436 280 PNGPSQVELLEDACR 294 (302)
Q Consensus 280 ~~~~~~~~~~~~~l~ 294 (302)
+ ++..+++.+.+.
T Consensus 345 ~--~~~~~~~~~~~~ 357 (382)
T PRK05101 345 P--EELVEAVRQAVA 357 (382)
T ss_pred c--HHHHHHHHHHHH
Confidence 8 566666766663
No 7
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=4.4e-36 Score=276.17 Aligned_cols=270 Identities=19% Similarity=0.258 Sum_probs=197.1
Q ss_pred CceEEEEEeeCCc--eeEeccCCCC--cceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHD--LVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSY 77 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i 77 (302)
|++++|+++++++ +.+.|.++.. ...|...+ .. ......|.+|+++++..+.. .+.++ ..|+++.|
T Consensus 48 ~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~-~~----~~~~~~w~~y~~gvi~~l~~----~~~~~-~~g~~i~i 117 (387)
T PRK05322 48 TLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLDD-LS----FDKEDDWANYPKGVLKFLQE----AGYKI-DHGFDILI 117 (387)
T ss_pred cceEEEEEEECCCCEEEEEECCCCCCceEEEeccc-cC----CCCccchHHHHHHHHHHHHH----cCCCC-CCCEEEEE
Confidence 7899999999877 7887776642 23443322 11 11124588999998887654 34433 36899999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecC---eeEEeecccc
Q 043436 78 DTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGG---LVHMDFRKEH 153 (302)
Q Consensus 78 ~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg---~~~~~~~~~~ 153 (302)
.|+||.++|||||||++||++.|++++++++ +++++++++|+.+|+ ++|.+||+|||+++.+|| .+++++++
T Consensus 118 ~s~iP~gsGLgSSAA~~va~~~al~~~~~~~--l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~-- 193 (387)
T PRK05322 118 YGNIPNGAGLSSSASIELLTGVILKDLFNLD--LDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNT-- 193 (387)
T ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCC--
Confidence 9999999999999999999999999999999 999999999999999 999999999999999998 44554332
Q ss_pred ccccCcccccccCCCCCCCEEEEEeCCCCChH------------HHHHHHHHhh------hcCcHHHH------------
Q 043436 154 MDELGHGIYKPMDIDLLPPLYLIYAENPSDSG------------KVHSTVRQRW------LDGDEFII------------ 203 (302)
Q Consensus 154 ~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~------------~~~~~~~~~~------~~~~~~~~------------ 203 (302)
+. ....|++.+.+ .|+|++|+.+++|. ++++.+...+ +..++.+.
T Consensus 194 ~~----~~~~~~~~~~~-~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (387)
T PRK05322 194 LE----YEYVPLDLGDY-VIVIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEFDEYSYLIKDETLL 268 (387)
T ss_pred Cc----eEEeccCCCCe-EEEEEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHHHHhhcCCHHHH
Confidence 11 12233332221 69999999987643 4444443221 11111111
Q ss_pred -HHHHHH--HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHH-HcCC-ceeecCCC--ceE
Q 043436 204 -SSMKEV--AQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIAR-RFGA-ASKFTGSG--GAV 275 (302)
Q Consensus 204 -~~~~~i--~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~-~~g~-gaklsGaG--g~~ 275 (302)
+..|.+ ..++..+..||+++|++.|+++|+++|..+++.+ .+++|++| +++.++ ..|+ |+|+|||| ||+
T Consensus 269 ~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y---~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~v 345 (387)
T PRK05322 269 KRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDY---EVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCA 345 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhh---cCCCHhHHHHHHHHHhcCCccEEEEecCCCceEE
Confidence 112211 2467888999999999999999999998887664 68899999 999997 4699 99999999 399
Q ss_pred EEEeeCCcchHHHHHHHHHH
Q 043436 276 IAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 276 ~al~~~~~~~~~~~~~~l~~ 295 (302)
+++++ .+..+++.+.+.+
T Consensus 346 ial~~--~~~~~~~~~~l~~ 363 (387)
T PRK05322 346 IAIVK--KDKVEAFKENVGK 363 (387)
T ss_pred EEEEc--HHHHHHHHHHHHH
Confidence 99998 4456666555543
No 8
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=270.95 Aligned_cols=265 Identities=18% Similarity=0.231 Sum_probs=196.1
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEe
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDT 79 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s 79 (302)
|++++|+++|+++ +.+.+.++...+.++.... ......|.+|+++++..+.+ .|..+ .|++|.|.|
T Consensus 31 ~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~------~~~~~~w~~y~~gv~~~l~~----~g~~~--~g~~i~i~s 98 (363)
T PRK00555 31 PQRTVVTFTPEHTDAITASSDRADGSARIPLDTT------PGQVTGWAAYAAGVIWALRG----AGHPV--PGGAMSITS 98 (363)
T ss_pred eccEEEEEEECCCCEEEEEECCCCCceEEecCCC------CCCCcchHHHHHHHHHHHHH----cCCCC--CCeEEEEec
Confidence 7899999999977 7888877655555443221 11124689999998887765 34432 589999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCe---eEEeecccccc
Q 043436 80 NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGL---VHMDFRKEHMD 155 (302)
Q Consensus 80 ~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~---~~~~~~~~~~~ 155 (302)
+||.++|||||||++||++.|++++++++ +++++++++|+.+|+ ++|.+||.+||+++++||. ++++|.+.
T Consensus 99 ~iP~g~GLgSSAA~~va~~~al~~~~~~~--~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~~--- 173 (363)
T PRK00555 99 DVEIGSGLSSSAALECAVLGAVGAATGTR--IDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFRDL--- 173 (363)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEEcCCC---
Confidence 99999999999999999999999999999 999999999999999 9999999999999999986 66665331
Q ss_pred ccCcccccccCCCC-CC--CEEEEEeCCCCChH--------HHHHHHHHhh------hc------------CcHHHHHHH
Q 043436 156 ELGHGIYKPMDIDL-LP--PLYLIYAENPSDSG--------KVHSTVRQRW------LD------------GDEFIISSM 206 (302)
Q Consensus 156 ~~g~~~~~~l~~~~-~~--~~~l~~~~~~~~t~--------~~~~~~~~~~------~~------------~~~~~~~~~ 206 (302)
.+.+++++. .+ .+++++++.++.+. +....+...+ +. .+....+..
T Consensus 174 -----~~~~v~~~~~~~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~r~~ 248 (363)
T PRK00555 174 -----TVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAALGAIADPIDARRAR 248 (363)
T ss_pred -----cEEEeccCCCcCceEEEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHHHhcCChHHHHHHH
Confidence 233443321 11 47888888877532 1112111111 00 011122223
Q ss_pred HHHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEee
Q 043436 207 KEVA--QMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCP 280 (302)
Q Consensus 207 ~~i~--~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~ 280 (302)
+.+. .++.++..+|.++|++.|+++|+++|..++.. ..+++|++| |++.+++.|+ |+|+|||| ||++++++
T Consensus 249 h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~---~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~Gg~vial~~ 325 (363)
T PRK00555 249 HVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDD---FEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVP 325 (363)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhh---cCCCChhHHHHHHHHHhcCCeEEEECCCCccCeEEEEEc
Confidence 3333 46888999999999999999999999988744 369999999 9999999999 99999997 59999998
Q ss_pred CCcchHHHHHHHH
Q 043436 281 NGPSQVELLEDAC 293 (302)
Q Consensus 281 ~~~~~~~~~~~~l 293 (302)
. +..+++.+.+
T Consensus 326 ~--~~~~~~~~~l 336 (363)
T PRK00555 326 A--DRAEDVADTV 336 (363)
T ss_pred h--hHHHHHHHHH
Confidence 4 4444555444
No 9
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=1.7e-35 Score=291.42 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=220.5
Q ss_pred eEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHH--------------HHHHHhHhcCCC
Q 043436 4 WASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICK--------------VFFKYCKDNKID 67 (302)
Q Consensus 4 ~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~g~~ 67 (302)
+++|+++|+++ +++.|.+++....++..+.+.. .....+|++|+++++. .+.+.++..|
T Consensus 650 pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~---~~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G-- 724 (974)
T PRK13412 650 PLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRD---YKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFG-- 724 (974)
T ss_pred cEEEEEEECCCCeEEEEECCCCCceEEecchhhcc---cccccchHhhhhhhheecccccccccchhHHHHHHHHhcC--
Confidence 58999999876 8899988865544544333221 1113568999999874 2333333222
Q ss_pred CCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEE
Q 043436 68 LHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHM 147 (302)
Q Consensus 68 ~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~ 147 (302)
.|++|.|.++||.|+|||||||++||++.|++.+++.+ +++++++++|..+|..+++++|.+|++++.+||++++
T Consensus 725 ---~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~--ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i 799 (974)
T PRK13412 725 ---SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLA--WDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLL 799 (974)
T ss_pred ---CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEE
Confidence 58999999999999999999999999999999999999 9999999999999997777788899999999999988
Q ss_pred eeccccccccCcccccccCCC-----CCC-CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 043436 148 DFRKEHMDELGHGIYKPMDID-----LLP-PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAIL 221 (302)
Q Consensus 148 ~~~~~~~~~~g~~~~~~l~~~-----~~~-~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~ 221 (302)
++.+.. . ....+.+++.+ .+. +++|++||.+++|++++.++...+...++...+.+++|.+++.++.++|.
T Consensus 800 ~~~~~~-~--~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~iV~~Vv~~~~~~~~~~~~~l~~ig~La~ea~~ALe 876 (974)
T PRK13412 800 QTGAGF-A--QSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGILAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQ 876 (974)
T ss_pred EecCCc-c--cCcceeecCcchhhhhhccCcEEEEECCCeeeHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 754311 0 00122333321 122 69999999999999999887766655566667788999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHHHHHcC
Q 043436 222 EKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDACRKAG 297 (302)
Q Consensus 222 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~g 297 (302)
++|++.||++|+++|.+++.|. ..+++|.+| |++.+++ ++ |+|++||| ||+++++++ ++.++++.+++++.+
T Consensus 877 ~gD~~~LG~LMn~~w~ll~~L~--~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~-~~~a~~I~~~L~~~~ 952 (974)
T PRK13412 877 RGEFEEFGRLVGKTWEQNKALD--SGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKD-PGAAERIRKILTENA 952 (974)
T ss_pred cCCHHHHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECC-hhhHHHHHHHHHhcc
Confidence 9999999999999999999995 569999999 9999976 68 99999999 399999975 778889999998753
No 10
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=2.1e-35 Score=261.11 Aligned_cols=242 Identities=25% Similarity=0.330 Sum_probs=190.0
Q ss_pred CceEEEEEeeCCc-eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeC
Q 043436 2 NFWASVKLEPSDD-LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTN 80 (302)
Q Consensus 2 d~~~~v~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~ 80 (302)
|+|++++++++++ +.+.+...... +. . .. .....|.+|+++++..+.+ .+ ..+++|.++|+
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~--~-~~-----~~~~~~~~~v~~~l~~~~~----~~----~~~~~i~i~s~ 86 (273)
T TIGR00549 25 PLRTTVTVIESSDGSFIESDLGRGS--LD--D-AP-----QELDGLVSYIAEALSYFSE----LN----PPPLEIEIDSE 86 (273)
T ss_pred cccEEEEEEEcCCCceEeccccCCc--Hh--H-hh-----HHHHHHHHHHHHHHHHhhc----cC----CCCEEEEEecC
Confidence 7899999988765 55555443111 00 0 00 0113578999998876542 11 13599999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccCc
Q 043436 81 IPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGH 159 (302)
Q Consensus 81 iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~ 159 (302)
||.++|||||||+++|++.|++++++.+ +++++++++|+.+|+ ++|.++|. |+++++|||+++++.+..
T Consensus 87 iP~g~GLGSSaa~~va~~~al~~~~~~~--~~~~~l~~~a~~~E~~~~G~~sG~-D~~~~~~Gg~~~~~~~~~------- 156 (273)
T TIGR00549 87 IPPGRGLGSSAAVAVALIRALADYFGSE--LSKEELAKLANEAEKIAHGKPSGI-DTATSTYGGPVYFEKGEG------- 156 (273)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCCCchH-hHHHHhcCCeEEEEcCCC-------
Confidence 9999999999999999999999999999 999999999999999 89999997 999999999998653221
Q ss_pred ccccccCCCCCC-CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 043436 160 GIYKPMDIDLLP-PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDL 238 (302)
Q Consensus 160 ~~~~~l~~~~~~-~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~ 238 (302)
..++..+ ++ .+++++|+.+++|.++++.++..+...++...+.++++.+++.+++.+|.++|++.|+++|+++|..
T Consensus 157 --~~~~~~~-~~~~lvl~~tg~~~~T~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~l~~~~~~~ 233 (273)
T TIGR00549 157 --EFTKLIS-LDGYFVIADTGVSGSTKEAVARVRQLLERFPELIDSIMDAIGELTLEAKAALQDGDVESLGELMNINQGL 233 (273)
T ss_pred --ceeeccC-CCeEEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1111111 12 7889999999999999888766554444445556677788999999999999999999999999988
Q ss_pred HHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEE
Q 043436 239 RRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAF 278 (302)
Q Consensus 239 ~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al 278 (302)
++++ .+++|++| +++.+++.|+ |+|||||| ||+++|
T Consensus 234 l~~~----~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 234 LKAL----GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHc----CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 8765 48899998 9999999998 99999999 388875
No 11
>PLN02865 galactokinase
Probab=100.00 E-value=1.4e-34 Score=265.94 Aligned_cols=274 Identities=17% Similarity=0.146 Sum_probs=200.2
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhh-----ccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRL-----QNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFT 74 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~ 74 (302)
|++++|.++|+++ +++.|.++.+...|+..+ .++.+ ......+|.+|+++++..+.+ .|..+ ..||+
T Consensus 59 ~~~~~va~~~~~~~~i~v~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~W~~Yv~gv~~~l~~----~g~~~-~~G~~ 132 (423)
T PLN02865 59 NKGILLGFVPSGDPEVLLRSAQFEGEVRFRVDE-IQHPIANVSSDSKEESNWGDYARGAVYALQS----RGHAL-SQGIT 132 (423)
T ss_pred eccEEEEEEECCCCEEEEEECCCCCceEEeccc-cccccccccccCCCCCCHHHHHHHHHHHHHH----cCCCC-CCceE
Confidence 6889999999987 888888775555666432 11100 001124699999999998875 35543 36999
Q ss_pred EEEEeCC-CCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeee---cCeeEEee
Q 043436 75 LSYDTNI-PRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVY---GGLVHMDF 149 (302)
Q Consensus 75 i~i~s~i-P~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~---Gg~~~~~~ 149 (302)
+.|.+++ |.++|||||||++||++.+++.+++++ +++++++++|+.+|+ ++|.+||+|||+++++ |+.++++|
T Consensus 133 ~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~--~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf 210 (423)
T PLN02865 133 GYISGSEGLDSSGLSSSAAVGVAYLLALENANNLT--VSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDC 210 (423)
T ss_pred EEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEc
Confidence 9999999 689999999999999999999999999 999999999999998 9999999999999555 47888887
Q ss_pred ccccccccCcccccccCCCC---CC--CEEEEEeCCCCC-h--HH----------HHHHHH----------HhhhcC---
Q 043436 150 RKEHMDELGHGIYKPMDIDL---LP--PLYLIYAENPSD-S--GK----------VHSTVR----------QRWLDG--- 198 (302)
Q Consensus 150 ~~~~~~~~g~~~~~~l~~~~---~~--~~~l~~~~~~~~-t--~~----------~~~~~~----------~~~~~~--- 198 (302)
.+-. ....|++++. .. .++++.++.++. | .+ +.+.+. .+++..
T Consensus 211 ~~l~------~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~ 284 (423)
T PLN02865 211 KTLD------HKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEASGNDELEPLLCNVEPEV 284 (423)
T ss_pred cCCC------cceeecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHHhcCCccchhhhhcCCHHH
Confidence 5421 1223443210 01 466777777653 2 11 111111 001100
Q ss_pred ---------cHHHHHHHHHHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHc-CC-
Q 043436 199 ---------DEFIISSMKEVA--QMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRF-GA- 264 (302)
Q Consensus 199 ---------~~~~~~~~~~i~--~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~-g~- 264 (302)
+....+..|.+. .+|.++.++|+++|++.||++|+++|.++++.| ++++|++| |++.+++. |+
T Consensus 285 ~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~y---evS~~eld~lv~~a~~~~Ga~ 361 (423)
T PLN02865 285 YEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENY---ECGCEPLIQLYEILLKAPGVY 361 (423)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhc---cCCcHHHHHHHHHHHhcCCCe
Confidence 111223344443 468899999999999999999999999999886 79999999 99999985 99
Q ss_pred ceeecCCC--ceEEEEeeCCcchHHHHHHHHH
Q 043436 265 ASKFTGSG--GAVIAFCPNGPSQVELLEDACR 294 (302)
Q Consensus 265 gaklsGaG--g~~~al~~~~~~~~~~~~~~l~ 294 (302)
|+||+|+| ||+++|++ ++..+++.+++.
T Consensus 362 GaR~tGgGfGGc~vaLv~--~~~~~~~~~~v~ 391 (423)
T PLN02865 362 GARFSGAGFRGCCVAFVD--AEMAEEAASFVR 391 (423)
T ss_pred EEEEeccCCccEEEEEEc--hhHHHHHHHHHH
Confidence 99999999 59999998 566666666653
No 12
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=4.5e-35 Score=270.39 Aligned_cols=268 Identities=17% Similarity=0.203 Sum_probs=193.6
Q ss_pred CceEEEEEeeCCc--eeEeccCCCC-cceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHD-LVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYD 78 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~ 78 (302)
|++++|+++|+++ +.+.+.+... ...+....... ......|.+|+++++..+.+.. ... +.|++|.|.
T Consensus 46 ~~~~~v~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~----~~~~~~w~~y~~~~~~~~~~~~----~~~-~~g~~i~i~ 116 (386)
T TIGR00131 46 DFGTLCAVAVRDDKNVRIYLANADNKFAERSLDLPLD----GSEVSDWANYFKGVLHVAQERF----NSF-PLGADIVCS 116 (386)
T ss_pred eccEEEEEEECCCCeEEEEECCCCCcceEEECCCCCC----CCCCCCcHhHHHHHHHHHHHhc----CCC-CCceEEEEE
Confidence 6899999999876 6776665532 22222211111 0111457899999998887642 222 358999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecC---eeEEeeccccc
Q 043436 79 TNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGG---LVHMDFRKEHM 154 (302)
Q Consensus 79 s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg---~~~~~~~~~~~ 154 (302)
++||+++|||||||++||++.|++.+++++ ++++++++++..+|+ ++|.++|.+||+++.+|| .+++++.+ +
T Consensus 117 s~iP~gsGLgSSAA~~vA~~~al~~~~~~~--~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~--~ 192 (386)
T TIGR00131 117 GNVPTGSGLSSSAAFECAVGAVLQNMGHLP--LDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRS--L 192 (386)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCC--C
Confidence 999999999999999999999999999999 999999999999999 999999999999999999 34555432 1
Q ss_pred cccCcccccccCCCCCC-CEEEEEeCCCCChHHH------------HHHHH-----HhhhcCcHHHH---HHHHHH----
Q 043436 155 DELGHGIYKPMDIDLLP-PLYLIYAENPSDSGKV------------HSTVR-----QRWLDGDEFII---SSMKEV---- 209 (302)
Q Consensus 155 ~~~g~~~~~~l~~~~~~-~~~l~~~~~~~~t~~~------------~~~~~-----~~~~~~~~~~~---~~~~~i---- 209 (302)
.+.+++++.+. .|+|++|+.+++|.+. ...+. ..++..++.+. +.+..+
T Consensus 193 ------~~~~~~~~~~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~ 266 (386)
T TIGR00131 193 ------KATPFKFPQLGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLV 266 (386)
T ss_pred ------ceeeecCCCCCeEEEEEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCHHHHhhhHhhHhhcCHHH
Confidence 23344333211 6899999998876421 01010 11111122111 111111
Q ss_pred ----------HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHH-HHcCC-ceeecCCC--ce
Q 043436 210 ----------AQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIA-RRFGA-ASKFTGSG--GA 274 (302)
Q Consensus 210 ----------~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a-~~~g~-gaklsGaG--g~ 274 (302)
..++.+++.+|.++|++.||++|+++|.++++++ .+++|++| +++.+ +..|+ |+|||||| ||
T Consensus 267 ~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~---~vs~peld~lv~~a~~~~GAlGakltGaG~GG~ 343 (386)
T TIGR00131 267 EERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDY---ECTCPEIDELVCSAALVNGSGGSRMTGAGFGGC 343 (386)
T ss_pred HhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhc---CCCCHHHHHHHHHHHhcCCCcEEEEecCCCceE
Confidence 1236689999999999999999999999998764 69999999 99876 56799 99999999 59
Q ss_pred EEEEeeCCcchHHHHHHHH
Q 043436 275 VIAFCPNGPSQVELLEDAC 293 (302)
Q Consensus 275 ~~al~~~~~~~~~~~~~~l 293 (302)
+++|++ ++.++++.+++
T Consensus 344 vial~~--~~~~~~v~~~~ 360 (386)
T TIGR00131 344 TVHLVP--NENVDKVRQAV 360 (386)
T ss_pred EEEEEc--HHHHHHHHHHH
Confidence 999998 45566777766
No 13
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=8.2e-34 Score=256.48 Aligned_cols=233 Identities=20% Similarity=0.307 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-
Q 043436 47 VRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK- 125 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~- 125 (302)
.|++.++++.+.+.+. ......|++|+|.++||.++|||||||++||++.|++++++++ ++.++++++|..+|.
T Consensus 72 ~n~~~~a~~~~~~~~~---~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~--ls~~el~~~a~~~E~~ 146 (328)
T PTZ00298 72 REEQRKAHQLVLRHLN---IDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLN--LTEEEVNLSAFVGEGG 146 (328)
T ss_pred HHHHHHHHHHHHHHHh---cccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 5888888888887653 2211258999999999999999999999999999999999999 999999999999999
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISS 205 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 205 (302)
++|.++|. |++++++||+++++... |...+.+++...-.++++++|+.+.+|.++++.++..+...++.+...
T Consensus 147 ~~g~~sG~-D~~~~~~Gg~~~~~~~~------g~~~~~~l~~~~~~~lvv~~~~~~~sT~~~~~~v~~~~~~~p~~~~~~ 219 (328)
T PTZ00298 147 YHGTPSGA-DNTAATYGGLISYRRVN------GKSVFKRIAFQQPLYLVVCSTGITASTTKVVGDVRKLKENQPTWFNRL 219 (328)
T ss_pred hcCCCChH-HHHHHHcCCeEEEecCC------CccceeEecCCCCCeEEEEECCCchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998 89999999998865322 111234443321116889999999999999887765554455555556
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc--eEEEEeeC
Q 043436 206 MKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG--AVIAFCPN 281 (302)
Q Consensus 206 ~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg--~~~al~~~ 281 (302)
+.++..++.++..+|.++|++.++++|+++|..++.+. +++|+++ +++.+++.|+ |+||||||+ |+++++++
T Consensus 220 ~~~~~~~~~~~~~al~~~d~~~lg~~m~~~~~~l~~~~----v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~ 295 (328)
T PTZ00298 220 LENYNACVSEAKEALQKGNLFRVGELMNANHDLCQKLT----VSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAAS 295 (328)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecc
Confidence 67777888999999999999999999999998887653 6899998 9999999999 999999994 99999975
Q ss_pred CcchHHHHHHHHHHc
Q 043436 282 GPSQVELLEDACRKA 296 (302)
Q Consensus 282 ~~~~~~~~~~~l~~~ 296 (302)
++.++++.+.+++.
T Consensus 296 -~~~a~~~~~~l~~~ 309 (328)
T PTZ00298 296 -EDQRDAIAKAVRAR 309 (328)
T ss_pred -hhhHHHHHHHHHHH
Confidence 45666777766554
No 14
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=7.4e-33 Score=248.16 Aligned_cols=225 Identities=22% Similarity=0.314 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
+..++.++++.+.+++ +. .|++|+|+++||.++|||||||+++|++.|++++++++ ++.++++++|..+|.
T Consensus 56 ~~~~~~~~~~~~~~~~---~~----~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~--l~~~~l~~la~~~E~ 126 (302)
T PRK03926 56 KHPYVSAAIEKMREEA---DK----DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLG--LSLEEIAKLGHKVEL 126 (302)
T ss_pred hhHHHHHHHHHHHHhc---CC----CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 3468888887776643 22 47999999999999999999999999999999999999 999999999999999
Q ss_pred -HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHH
Q 043436 126 -ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIIS 204 (302)
Q Consensus 126 -~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 204 (302)
.+|.++|. |++++.+||++++. +. . +++...+ +++|++|+.+.+|++++..++..+...++.+..
T Consensus 127 ~~~G~~sg~-D~~~~~~Gg~~~~~-~~---------~--~l~~~~~-~~vl~~~~~~~sT~~~~~~~~~~~~~~~~~~~~ 192 (302)
T PRK03926 127 LVQGAASPT-DTYVSTMGGFVTIP-DR---------K--KLPFPEC-GIVVGYTGSSGSTKELVANVRKLKEEYPELIEP 192 (302)
T ss_pred HHcCCCchH-HHHHHhcCCeEEEc-CC---------C--cCCCCCc-eEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHH
Confidence 88887775 99999999998764 11 1 2222122 688999999999999988876655545554444
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc--eEEEEee
Q 043436 205 SMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG--AVIAFCP 280 (302)
Q Consensus 205 ~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg--~~~al~~ 280 (302)
.++.+..++.++..++.++|++.|+++|+.+|.+++.+ .+++|+++ +++.+++.|+ |++|||||+ |++++++
T Consensus 193 ~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~----~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~ 268 (302)
T PRK03926 193 ILSSIGKISEKGEELILSGDYVSLGELMNINQGLLDAL----GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAA 268 (302)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEec
Confidence 55566777888889999999999999999999877654 37889998 9999999999 999999994 9999997
Q ss_pred CCcchHHHHHHHHHHcCCc
Q 043436 281 NGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 281 ~~~~~~~~~~~~l~~~g~~ 299 (302)
++..+++.++|++.+..
T Consensus 269 --~~~~~~~~~~~~~~~~~ 285 (302)
T PRK03926 269 --PEKQSEVATAIKIAGGK 285 (302)
T ss_pred --cccHHHHHHHHHhcCCe
Confidence 45677888998887544
No 15
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=1.2e-32 Score=255.66 Aligned_cols=269 Identities=13% Similarity=0.130 Sum_probs=180.5
Q ss_pred CceEEEEEeeC---Cc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCC---CCCce
Q 043436 2 NFWASVKLEPS---DD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDL---HKGNF 73 (302)
Q Consensus 2 d~~~~v~~~~~---~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~---~~~g~ 73 (302)
|++++|.+.++ ++ +++.+.. .+ .|+... ... .....+|.+|++++++.+++. .|..+ +..||
T Consensus 66 d~~~~va~~~~~~~~~~~i~~~~~~-~~--~~~~~~-~~~---~~~~~~W~nYv~gv~~~~l~~---~g~~~~~~~~~G~ 135 (468)
T PTZ00290 66 LEGCHILVGRVKHFCDHKLRFATET-DE--HFVLDH-LGG---AKHNKAWTTFVRGAATLRLNR---LGVAIDAPSLQGV 135 (468)
T ss_pred cCcEEEEEeecCCCCCCeEEEEECC-Cc--eeecCc-ccc---cCCcccHHHHHHHHHHHHHHH---hCCCcccCCCCCe
Confidence 68899998765 33 6664443 22 333221 100 011246999999999876653 24432 13699
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCC-----C----------CCCC---cccHhHHHHHHHH-HcCCCCCcc
Q 043436 74 TLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKV-----R----------HLVK---VEIRPNLILNAEK-ELGIVAGLQ 134 (302)
Q Consensus 74 ~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~-----~----------~~ls---~~el~~la~~~E~-~~g~~~g~~ 134 (302)
++.|.++||.|+|||||||+.||++.|++.++++ . ..++ ..+|+++|+++|+ ++|.+||+|
T Consensus 136 d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiM 215 (468)
T PTZ00290 136 CMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIM 215 (468)
T ss_pred EEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchh
Confidence 9999999999999999999999999999998732 1 0023 3688899999999 999999999
Q ss_pred ceeeeeecCe---eEEeeccccccccCcccccccCCCCC-C---CEEEEEeCCCCChH-----H----------HHHHHH
Q 043436 135 DRVAQVYGGL---VHMDFRKEHMDELGHGIYKPMDIDLL-P---PLYLIYAENPSDSG-----K----------VHSTVR 192 (302)
Q Consensus 135 D~~~~~~Gg~---~~~~~~~~~~~~~g~~~~~~l~~~~~-~---~~~l~~~~~~~~t~-----~----------~~~~~~ 192 (302)
||+++++|+. .+++|.+ + .+.+++++.+ | .|+|++|+.+++-. + +.+.+.
T Consensus 216 DQ~asa~g~~~~al~iD~~~--l------~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~ 287 (468)
T PTZ00290 216 DQFISAFAEEDKFMFLDCKS--L------TFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIG 287 (468)
T ss_pred hHHHHHhCCCCcEEEEecCC--C------eEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhc
Confidence 9999999854 4445432 1 2444443221 1 68899998876411 0 111110
Q ss_pred ---------Hhhhc------------------------CcHHHHHHHHHHH--HHHHHHHHHHH-------ccCHHHHHH
Q 043436 193 ---------QRWLD------------------------GDEFIISSMKEVA--QMAAEGQAAIL-------EKNYSKLAE 230 (302)
Q Consensus 193 ---------~~~~~------------------------~~~~~~~~~~~i~--~~~~~~~~al~-------~~d~~~~~~ 230 (302)
.+++. .+....+..|.+. .+|.+++.+|+ .+|++.||+
T Consensus 288 ~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~ 367 (468)
T PTZ00290 288 KHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGE 367 (468)
T ss_pred cccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHH
Confidence 00000 0111223344443 45778888885 456999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCccHH-HHHHHH-HcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHHH
Q 043436 231 LMNHNFDLRRRMFGDDVLGALNIE-MVEIAR-RFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDAC 293 (302)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~-~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~l 293 (302)
+|+++|..+++.+ .+++|++| |++.+. ..|+ |+||||+| ||+++|++. +..+++.+++
T Consensus 368 lm~~sh~sL~~~~---~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~~--~~~~~~~~~v 430 (468)
T PTZ00290 368 ILNAGHQGMRDLM---KITTPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKK--NAVDRVVAHV 430 (468)
T ss_pred HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEEEech--hhHHHHHHHH
Confidence 9999998888765 79999999 999764 5699 99999999 499999983 4444444444
No 16
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=7.2e-32 Score=246.30 Aligned_cols=266 Identities=17% Similarity=0.219 Sum_probs=190.8
Q ss_pred CceEEEEEeeCCceeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCC
Q 043436 2 NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNI 81 (302)
Q Consensus 2 d~~~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~i 81 (302)
|+|++|+++|.+.+.+.+.+++....|...+ ++ ....|.+|+++++..+.+ .+.. ..|++|.|.|+|
T Consensus 29 ~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~----~~~~--~~~~~i~i~s~i 95 (351)
T PRK03817 29 NLYTFLEIEKSEKFIFYSENFNEEKTFELDK-LE------KLNSWADYIKGVIWVLEK----RGYE--VGGVKGKVSSNL 95 (351)
T ss_pred cCcEEEEEEeCCeEEEEECCCCCcEEEeCCc-cC------CCCchHHHHHHHHHHHHH----cCCC--CCCeEEEEeCCC
Confidence 7899999999866777777765555555422 11 113578999998876653 2333 368999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCe---eEEeecccccccc
Q 043436 82 PRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGL---VHMDFRKEHMDEL 157 (302)
Q Consensus 82 P~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~---~~~~~~~~~~~~~ 157 (302)
|.++|||||||+++|++.|++++++++ +++++++++|..+|+ .+|.++|.+|++++.+|+. .++++.+ +
T Consensus 96 P~~~GLgSSaa~~va~~~al~~~~~~~--~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~--~--- 168 (351)
T PRK03817 96 PIGAGLSSSASLEVAVAYALNEAYNLN--LSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMT--L--- 168 (351)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEecCC--C---
Confidence 999999999999999999999999999 999999999999999 9999999999999999863 3333211 1
Q ss_pred CcccccccCCCCCCCEEEEEeCCCCChH--------HHHHHHHHhhh-------------cCcHHHHHHHHH-HH--HHH
Q 043436 158 GHGIYKPMDIDLLPPLYLIYAENPSDSG--------KVHSTVRQRWL-------------DGDEFIISSMKE-VA--QMA 213 (302)
Q Consensus 158 g~~~~~~l~~~~~~~~~l~~~~~~~~t~--------~~~~~~~~~~~-------------~~~~~~~~~~~~-i~--~~~ 213 (302)
.+.+++++.-..+++++|+.++.+. .....+...+. ..++...+.+.. +. ..+
T Consensus 169 ---~~~~~~~~~~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~v~e~~r~ 245 (351)
T PRK03817 169 ---EYEYVPFPEDYEILVFDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLSKLPPLLRKRAGYVLRENERV 245 (351)
T ss_pred ---ceEEEecCCCcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1223332211168899998754432 11111111110 011111111111 11 346
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcchHHHH
Q 043436 214 AEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELL 289 (302)
Q Consensus 214 ~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~~~~~ 289 (302)
.+++.+|.++|++.||++|+++|..+++.+ .+++|++| +++.+++.|+ |+|+|||| ||++++++ ++..+++
T Consensus 246 ~~~~~al~~~d~~~lg~l~~~s~~~l~~~~---~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vlal~~--~~~~~~~ 320 (351)
T PRK03817 246 LKVRDALKEGDIETLGELLTESHWDLADNY---EVSCEELDFFVEFALELGAYGARLTGAGFGGSAIALVD--KGKFESI 320 (351)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEEEEc--hHHHHHH
Confidence 788899999999999999999998887654 57899998 9999999999 99999999 69999997 4555666
Q ss_pred HHHHHH
Q 043436 290 EDACRK 295 (302)
Q Consensus 290 ~~~l~~ 295 (302)
.+.+++
T Consensus 321 ~~~l~~ 326 (351)
T PRK03817 321 GEELLE 326 (351)
T ss_pred HHHHHH
Confidence 665544
No 17
>PLN02521 galactokinase
Probab=100.00 E-value=1.1e-31 Score=252.07 Aligned_cols=277 Identities=16% Similarity=0.198 Sum_probs=194.3
Q ss_pred CceEEEEEeeCCc---eeEeccCCCC-cceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCC-CCceEEE
Q 043436 2 NFWASVKLEPSDD---LVIKPHPVHD-LVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLH-KGNFTLS 76 (302)
Q Consensus 2 d~~~~v~~~~~~~---~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~-~~g~~i~ 76 (302)
|++++|+++|+++ +.+.+.+... ...|..... ... ......|.+|+..++..+++.++..+..++ +.|+++.
T Consensus 77 ~~~~~v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~-~~~--~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~ 153 (497)
T PLN02521 77 RQDTIVAIRRAEGSKKLRIANVNDKYTTCTFPADPD-QEV--DLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVV 153 (497)
T ss_pred cCcEEEEEEEcCCCCEEEEEECCCCCCceeeecCcc-ccc--ccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEE
Confidence 6789999999853 7777665422 223332210 000 011245899997777777777765554331 3599999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeec--Cee-EEeecccc
Q 043436 77 YDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYG--GLV-HMDFRKEH 153 (302)
Q Consensus 77 i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~G--g~~-~~~~~~~~ 153 (302)
|.|+||.++|||||||++||++.|++.+++++ +++++++++|+++|+++|.++|.+||+++++| |.. +++|.+
T Consensus 154 i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~--l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~-- 229 (497)
T PLN02521 154 VDGTVPTGSGLSSSAALVCSAAIAIMAALGLN--FTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNP-- 229 (497)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEecCC--
Confidence 99999999999999999999999999999999 99999999999999989999999999999998 444 445533
Q ss_pred ccccCcccccccCCCCCCCEEEEEeCCCCC---hH------------HHHHHHHH---------------hhhc------
Q 043436 154 MDELGHGIYKPMDIDLLPPLYLIYAENPSD---SG------------KVHSTVRQ---------------RWLD------ 197 (302)
Q Consensus 154 ~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~---t~------------~~~~~~~~---------------~~~~------ 197 (302)
+ .+.+++++.-..|+|++++.++. +. .+...+.. +++.
T Consensus 230 l------~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~ 303 (497)
T PLN02521 230 V------RATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVS 303 (497)
T ss_pred C------ceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhh
Confidence 1 23344332111688888875432 21 01111100 0000
Q ss_pred ----------------------------------C--------------------cHHHHHHHHHH--HHHHHHHHHHHH
Q 043436 198 ----------------------------------G--------------------DEFIISSMKEV--AQMAAEGQAAIL 221 (302)
Q Consensus 198 ----------------------------------~--------------------~~~~~~~~~~i--~~~~~~~~~al~ 221 (302)
. +....+..|.+ +.+|.++.++|+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~ 383 (497)
T PLN02521 304 FAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVS 383 (497)
T ss_pred hcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHH
Confidence 0 00111222333 245788889988
Q ss_pred cc-----CHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHH
Q 043436 222 EK-----NYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDA 292 (302)
Q Consensus 222 ~~-----d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~ 292 (302)
++ ++..||++|+++|.++++++ .+++|++| |++.+++.|+ |+||+||| ||++++++ ++..+++.+.
T Consensus 384 ~~~~~~~~~~~lg~lm~~sh~slr~~~---~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~--~~~~~~~~~~ 458 (497)
T PLN02521 384 SSLSEEEKLKKLGDLMNESHYSCSVLY---ECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVK--EAIVPQFILA 458 (497)
T ss_pred hcCccchHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEEC--HHHHHHHHHH
Confidence 76 38999999999999999885 79999999 9999999999 99999999 49999998 5556677766
Q ss_pred HHHc
Q 043436 293 CRKA 296 (302)
Q Consensus 293 l~~~ 296 (302)
+.+.
T Consensus 459 l~~~ 462 (497)
T PLN02521 459 LKEK 462 (497)
T ss_pred HHHH
Confidence 6544
No 18
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.97 E-value=5.8e-29 Score=215.34 Aligned_cols=213 Identities=24% Similarity=0.375 Sum_probs=177.4
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCC-C-----CCcc---cHhHHHHHHHH-HcCCCCCccceeeeeec
Q 043436 73 FTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRH-L-----VKVE---IRPNLILNAEK-ELGIVAGLQDRVAQVYG 142 (302)
Q Consensus 73 ~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~-~-----ls~~---el~~la~~~E~-~~g~~~g~~D~~~~~~G 142 (302)
+++.+.|++|.|+|||||+|.+|+++.+++.++++-. + ++.+ -+-++|...|. ++|+++|+ |.+.|+||
T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~G 210 (397)
T KOG1511|consen 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYG 210 (397)
T ss_pred eEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccC
Confidence 8999999999999999999999999999999887531 0 1112 36689999999 99999999 89999999
Q ss_pred CeeEEeeccccccccCcccccccCC-CCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 043436 143 GLVHMDFRKEHMDELGHGIYKPMDI-DLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAIL 221 (302)
Q Consensus 143 g~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~ 221 (302)
|.+.|. + |. .+..++. +.+ ++++.++..+++|+.+++.|+.+..+.|+-+...+..|+++..++...+.
T Consensus 211 g~i~f~--k------g~-~~~~Lk~~~~L-~illtnTrv~RnTk~lVa~Vr~~~~kfPevi~~i~~aid~is~ea~~il~ 280 (397)
T KOG1511|consen 211 GLISFK--K------GV-EIESLKHLPPL-RILLTNTRVPRNTKALVAGVRELLEKFPEVIKAIFDAIDEISLEAVWILQ 280 (397)
T ss_pred ceEEee--c------Cc-cceecccCCCc-eEEEEccccCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999864 3 21 2444442 122 78999999999999999999999988898888899999999999999988
Q ss_pred cc----CH---HHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCC--ceEEEEeeCC--cchHHHH
Q 043436 222 EK----NY---SKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSG--GAVIAFCPNG--PSQVELL 289 (302)
Q Consensus 222 ~~----d~---~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaG--g~~~al~~~~--~~~~~~~ 289 (302)
++ +. +++.++|+.||.++..++ ++.|.+| ++...++.|..+|+|||| ||++++.+.+ .+..+.+
T Consensus 281 ~e~~~~~~~~Eq~L~eLi~iNq~LL~alG----VsH~~le~v~~~t~k~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ 356 (397)
T KOG1511|consen 281 RENDEFSSPKEQKLEELIRINQDLLDALG----VSHPSLELVCTTTRKLGIHSKLTGAGGGGCVITLLKPGTEQEQIDKW 356 (397)
T ss_pred cccccCCCcHHHHHHHHHHHhHHHHHHhC----CCcHHHHHHHHHHHHhCcceecccCCCCceEEEEECCCCchHHHHHH
Confidence 42 22 259999999999999997 9999999 999999999988999999 3999999852 2468888
Q ss_pred HHHHHHcCCcc
Q 043436 290 EDACRKAGFSI 300 (302)
Q Consensus 290 ~~~l~~~g~~~ 300 (302)
++.|+..|+.+
T Consensus 357 ke~L~s~gf~v 367 (397)
T KOG1511|consen 357 KEELESHGFEV 367 (397)
T ss_pred HHHHHhcCcce
Confidence 99999998875
No 19
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=1.1e-28 Score=227.88 Aligned_cols=297 Identities=15% Similarity=0.153 Sum_probs=210.7
Q ss_pred CceEEEEEeeCCc--------eeEeccCCC-Ccceeccchh-hhhhh---ccCCccchHHHHHHHHHHHHHHhHhcCCCC
Q 043436 2 NFWASVKLEPSDD--------LVIKPHPVH-DLVQFQSLHH-LMNRL---QNEGYYGGVRLVMAICKVFFKYCKDNKIDL 68 (302)
Q Consensus 2 d~~~~v~~~~~~~--------~~~~s~~~~-~~~~~~~~~~-~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~ 68 (302)
|+|+|+++++.+. +.+.|.++. +.++|..... ..... ..+.......||..++..+..|+...+.+.
T Consensus 29 ~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~~~~~~~~~~~~~~~~~~~~n~fv~~ai~~~~~y~~~~~~~~ 108 (454)
T TIGR01219 29 NARFYAIVKPINEEVGAWKWDVRVKSPQFSDREWLYKISLNHLTLQSVSASDSRNPFVNPFIQYAIAAVHLYFDKESLHK 108 (454)
T ss_pred cceEEEEEeecccccccCcceEEEeCCCCCCCceEEEEecCCccceeecccccCCCCCChHHHHHHHHHHHHHHhccccc
Confidence 6899999976532 467777764 5566665431 10000 001012456899999999999997654431
Q ss_pred -CCCceEEEEEeCC-------------------C--------CCCCCchHHHHHHHHHHHHHHHhCCCCCC---------
Q 043436 69 -HKGNFTLSYDTNI-------------------P--------RQTGLSGSSAIVCAALDCLLDFYKVRHLV--------- 111 (302)
Q Consensus 69 -~~~g~~i~i~s~i-------------------P--------~~~GLgSSsA~~va~~~al~~~~~~~~~l--------- 111 (302)
...+++|+|.|+. + .++|||||||++||+++||..+++.. +
T Consensus 109 ~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~--~~~~~~~~~~ 186 (454)
T TIGR01219 109 LLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVV--DLSDPDKEGK 186 (454)
T ss_pred cccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCc--cccccccccc
Confidence 0247999998776 2 38999999999999999999999987 6
Q ss_pred ----CcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccC----------------ccccc----ccC
Q 043436 112 ----KVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELG----------------HGIYK----PMD 166 (302)
Q Consensus 112 ----s~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g----------------~~~~~----~l~ 166 (302)
+.+.+.++|+.+|. .+|++|+..|+++++|||+.+..|++.++.... ...|+ ++.
T Consensus 187 ~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGgi~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~ 266 (454)
T TIGR01219 187 FGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFS 266 (454)
T ss_pred ccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCceEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeecc
Confidence 67899999999999 777666667999999999766668775421100 01232 333
Q ss_pred CC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHH---------------------HHHcc-
Q 043436 167 ID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQA---------------------AILEK- 223 (302)
Q Consensus 167 ~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------al~~~- 223 (302)
++ .+ +++|.|++.+++|..+++.|...+...++.....++.+...-..+.. .|..+
T Consensus 267 lP~~l-~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~ 345 (454)
T TIGR01219 267 LPPLM-NLFMGDPGGGSSTPSMVGKVKKWQMSDPEESRENWQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEK 345 (454)
T ss_pred CCCCC-EEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhcccc
Confidence 21 12 79999999999999999999888877776666656555443222222 24445
Q ss_pred -------CHHHHHHHHHHHHHHHHhhcCCC--CCCCccHH-HHHHHHHc-CC-ceeecCCCc--eEEEEeeCCcchHHHH
Q 043436 224 -------NYSKLAELMNHNFDLRRRMFGDD--VLGALNIE-MVEIARRF-GA-ASKFTGSGG--AVIAFCPNGPSQVELL 289 (302)
Q Consensus 224 -------d~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~-l~~~a~~~-g~-gaklsGaGg--~~~al~~~~~~~~~~~ 289 (302)
|+..+.+.|.++..++++|..-. .+.+|++. |++.+.+. |+ +++++|||| |+++|+.++.+..+++
T Consensus 346 ~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~ 425 (454)
T TIGR01219 346 CVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKL 425 (454)
T ss_pred chhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHH
Confidence 78889999999999999887322 23345554 99999887 67 899999997 9999987522338999
Q ss_pred HHHHHHcCCccc
Q 043436 290 EDACRKAGFSIE 301 (302)
Q Consensus 290 ~~~l~~~g~~~~ 301 (302)
.+.|++.|+..+
T Consensus 426 ~~~W~~~~V~pL 437 (454)
T TIGR01219 426 TQAWSSHNVLAL 437 (454)
T ss_pred HHHHhhCCEEEE
Confidence 999999887644
No 20
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.96 E-value=6.3e-27 Score=204.65 Aligned_cols=209 Identities=22% Similarity=0.254 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHc
Q 043436 48 RLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKEL 127 (302)
Q Consensus 48 ~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~ 127 (302)
|++..+++.+.+.+ +. +.|++|+++++||.++|||||||+++|++.|++++++++ ++.+++.+++..+|...
T Consensus 46 n~i~~~~~~~~~~~---~~---~~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~--l~~~~l~~la~~~e~~~ 117 (261)
T TIGR01920 46 RLIERILTAIRSKF---GI---VDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVE--IDDIDILRLGARLSKDA 117 (261)
T ss_pred HHHHHHHHHHHHhc---CC---CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhh
Confidence 78888888777643 33 358999999999999999999999999999999999999 99999999999999933
Q ss_pred C--CCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHH
Q 043436 128 G--IVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISS 205 (302)
Q Consensus 128 g--~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 205 (302)
+ ..+|.+|+++++|||+++.+..+.. .+.+.+.+.+ .++++.++...+|.++.. ..
T Consensus 118 ~~~~~~~~~D~~~~~~gG~~~~~~~~~~-------~~~~~~~~~~-~~vv~~p~~~~tt~~~~~--------------~~ 175 (261)
T TIGR01920 118 GLSVTGAFDDAAASYLGGIVITDNRRMK-------ILKRDKLEGC-TAAVLVPKEGERRENVDL--------------NR 175 (261)
T ss_pred CCCCCCcHHHHHHHHhCCEEEEeCCCce-------EEEecCCCCc-eEEEEECCCCcccccccH--------------HH
Confidence 3 6789999999999999876532110 1222222212 577777877655543211 12
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHcCC-ceeecCCCceEEEEeeCCcc
Q 043436 206 MKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGA-ASKFTGSGGAVIAFCPNGPS 284 (302)
Q Consensus 206 ~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~a~~~g~-gaklsGaGg~~~al~~~~~~ 284 (302)
+..+..+++++.++++.+|+. ++|+.||.++... +.. ..++++.+++.|+ |++|||+|||+++|+++ .
T Consensus 176 l~~~~~~~~~~~~~~~~~~l~---~am~~n~~l~~~~-----lg~-~~~~i~~a~~~Galga~lSGaG~sv~aL~~~--~ 244 (261)
T TIGR01920 176 FRRISPVVEEAFNLALRGEYL---KAMVLNGVAYATA-----LGY-PLEPASKALEAGAAAAGLSGKGPSYFALTED--P 244 (261)
T ss_pred hhhcchHHHHHHHHHhhCCHH---HHHhhChHHhHHh-----hCC-ChHHHHHHHHcCCcEEeecCCCCeEEEEeCC--H
Confidence 233336677788889999876 6888888655221 221 1147788999999 99999999999999874 2
Q ss_pred hHHHHHHHHHHcCCc
Q 043436 285 QVELLEDACRKAGFS 299 (302)
Q Consensus 285 ~~~~~~~~l~~~g~~ 299 (302)
+++.++|++.+..
T Consensus 245 --~~v~~~~~~~~~~ 257 (261)
T TIGR01920 245 --EEAAEALMEFGGD 257 (261)
T ss_pred --HHHHHHHHhCCCe
Confidence 6899999887654
No 21
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=2.2e-27 Score=212.32 Aligned_cols=257 Identities=18% Similarity=0.185 Sum_probs=184.4
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchhhhhhhcc---CC-ccchHHHHHHHHHHHHHHhHhcCCCCCCCc
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHHLMNRLQN---EG-YYGGVRLVMAICKVFFKYCKDNKIDLHKGN 72 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g 72 (302)
|+++.|+-++.+. .++...++.+.+.++..+........ .. ..+..|+++++++.+.+++ +. ..+
T Consensus 10 Nl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~~~i~~~~~~~~~~~~~~~nl~~~~~~~~~~~~---~~---~~~ 83 (300)
T PRK03188 10 NLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADVLSVEVSGEGADQVPTDESNLAWRAAELLAEHV---GR---APD 83 (300)
T ss_pred EEeeccCCcCCCCccchHhhheehhhccEEEEEECCCcEEEEecCCccCCCCCCccHHHHHHHHHHHHh---CC---CCC
Confidence 5677777765543 66777777777777643321111100 01 1234689999998888765 32 257
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccc
Q 043436 73 FTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKE 152 (302)
Q Consensus 73 ~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 152 (302)
++|+|+|+||.++|||||||+++|++.|++++++.+ ++.+++.++|.++ | .|++++++||+++.....
T Consensus 84 ~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~--ls~~el~~~a~~i--------g-~dv~~~~~GG~~~~~~~g- 151 (300)
T PRK03188 84 VHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLG--LSRDELLELAAEL--------G-SDVPFALLGGTALGTGRG- 151 (300)
T ss_pred eEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------C-CCcchhhcCCeEEEEecC-
Confidence 999999999999999999999999999999999999 9999999999887 4 399999999998864221
Q ss_pred cccccCcccccccCC-CCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 043436 153 HMDELGHGIYKPMDI-DLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAEL 231 (302)
Q Consensus 153 ~~~~~g~~~~~~l~~-~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~ 231 (302)
. .+.++.. ..+ +++++.++...+|+++++.++........ .. ...+..+..++.++|++.+++.
T Consensus 152 ------~-~~~~~~~~~~~-~~~lv~p~~~~sT~~~~~~l~~~~~~~~~---~~----~~~~~~~~~al~~~d~~~l~~~ 216 (300)
T PRK03188 152 ------E-QLAPVLARGTF-HWVLAFADGGLSTPAVFRELDRLREAGDP---PR----LGEPDPLLAALRAGDPAQLAPL 216 (300)
T ss_pred ------C-EEEECCCCCCc-EEEEEeCCCCCCHHHHHHhchhhhccccc---cc----cccHHHHHHHHHcCCHHHHHHH
Confidence 1 2333322 112 56677788888999887765432211000 00 1345678899999999999998
Q ss_pred HHHHHHHHHhhcCCCCC-CCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCc
Q 043436 232 MNHNFDLRRRMFGDDVL-GALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 232 ~~~~~~~~~~l~~~~~~-~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
|+...+. . .+ ..|+++ +++.+++.|+ |++|||+|+++++++++ ++.++++.++|++.|..
T Consensus 217 ~~n~le~---~----~~~~~p~l~~l~~~~~~~Galga~lSGsG~tv~~l~~~-~~~~~~~~~~l~~~g~~ 279 (300)
T PRK03188 217 LGNDLQA---A----ALSLRPSLRRTLRAGEEAGALAGIVSGSGPTCAFLCAD-ADSAVDVAAALSGAGVC 279 (300)
T ss_pred hhCcCHH---H----HHHhCchHHHHHHHHHHCCCCEEEEEccccceEEEeCC-HHHHHHHHHHHHhcCcc
Confidence 8632111 1 13 368888 9999999999 99999999999999975 56788999999987753
No 22
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=1.8e-26 Score=205.17 Aligned_cols=208 Identities=20% Similarity=0.237 Sum_probs=159.1
Q ss_pred chHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHH
Q 043436 45 GGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124 (302)
Q Consensus 45 ~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E 124 (302)
++.|++.++++.+.+.+ +. +.|++|+|.++||.++|||||||+++|++.+++++++.+ ++.+++.++|..+
T Consensus 63 ~~~n~~~~~~~~~~~~~---~~---~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~--l~~~~l~~~a~~~- 133 (286)
T PRK00128 63 DERNLAYKAAKLLKERY---NI---KQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLG--LSLEELAEIGLEI- 133 (286)
T ss_pred CCCcHHHHHHHHHHHhc---CC---CCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCC--cCHHHHHHHHHHh-
Confidence 35688999888887753 33 357999999999999999999999999999999999999 9999999999887
Q ss_pred HHcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCC-CCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDI-DLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 125 ~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
|. |++++++||+++.+.... .+.+++. +.+ ++++++|+...+|+++++.++.....
T Consensus 134 -------g~-dv~~~~~Gg~~~~~~~g~--------~~~~~~~~~~~-~~vv~~p~~~~~T~~~~~~~~~~~~~------ 190 (286)
T PRK00128 134 -------GS-DVPFCIYGGTALATGRGE--------KITPLKSPPSC-WVVLAKPDIGVSTKDVYKNLDLDKIS------ 190 (286)
T ss_pred -------CC-CCCeEeeCCeEEEecCCc--------ccccCCCCCCc-EEEEEcCCCCCCHHHHHhcCcccccc------
Confidence 33 899999999988652211 2344432 112 68888899989999887654211100
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeC
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPN 281 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~ 281 (302)
...+..+..++.++|++.++.+|... +.... ....|+++ +++.+++.|+ |+++||+|||+++++++
T Consensus 191 ------~~~~~~~~~~l~~~d~~~~~~~~~n~---l~~~~---~~~~p~l~~l~~~~~~~Ga~g~~lSGsG~sv~~l~~~ 258 (286)
T PRK00128 191 ------HPDTEKLIEAIEEGDYQGICANMGNV---LENVT---LKKYPEIAKIKERMLKFGADGALMSGSGPTVFGLFDD 258 (286)
T ss_pred ------CcchHHHHHHHhcCCHHHHHHhccCc---HHHHH---HhhChHHHHHHHHHHhcCCCeeEEcccCccEEEEeCC
Confidence 12356677899999999999987632 22221 12368887 9999999999 99999999999999975
Q ss_pred CcchHHHHHHHHHHcC
Q 043436 282 GPSQVELLEDACRKAG 297 (302)
Q Consensus 282 ~~~~~~~~~~~l~~~g 297 (302)
++.++++.++|++++
T Consensus 259 -~~~~~~i~~~l~~~~ 273 (286)
T PRK00128 259 -ESRAQRIYNGLKGFC 273 (286)
T ss_pred -HHHHHHHHHHhHhhc
Confidence 566889999998774
No 23
>PLN02451 homoserine kinase
Probab=99.95 E-value=2.5e-26 Score=209.54 Aligned_cols=222 Identities=17% Similarity=0.144 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-
Q 043436 47 VRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK- 125 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~- 125 (302)
.|++..+++.+++++ |.. +.|++|+|+++||.++|||||||+++|++.|++++++.+ ++++|+++++.++|.
T Consensus 114 ~Nlv~~a~~~~~~~~---g~~--~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~--ls~~eL~~la~~~E~~ 186 (370)
T PLN02451 114 RNCAGIAAIATMKLL---GIR--SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSP--LGKDDLVLAGLESEAK 186 (370)
T ss_pred cCcHHHHHHHHHHHc---CCC--CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHhch
Confidence 699999998888754 332 358999999999999999999999999999999999999 999999999999998
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCC--CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLP--PLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
..|. +.++++++++||++++... ... .+.+++++..+ ++++++|+...+|+++++.+.......
T Consensus 187 v~g~--h~Dnva~a~~GG~v~~~~~-~~~------~~~~~~~p~~~~~~~Vlv~P~~~~sT~~ar~~lp~~~~~~----- 252 (370)
T PLN02451 187 VSGY--HADNIAPALMGGFVLIRSY-EPL------HLIPLRFPSAKDLFFVLVSPDFEAPTKKMRAALPKEIPMK----- 252 (370)
T ss_pred hcCC--CccchhHhhcCCEEEEEec-CCC------eEEEeecCCCCCeEEEEEcCCCCccHHHHHHHHhhhcchh-----
Confidence 5553 5666666899999886521 110 22333322111 578888999999999887664432111
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeC
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPN 281 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~ 281 (302)
+....+ ..+..+..+|.++|++.+++.|++.+.+.... ....|+++ +++.+++.|+ |++|||+|+|+++++++
T Consensus 253 ~~v~~~-~~~~~l~~al~~~d~~~l~~~m~nD~~~e~~r----~~~~P~l~~l~~~~~~~GA~ga~mSGSGptvfal~~~ 327 (370)
T PLN02451 253 HHVWNC-SQAAALVAAILQGDAVLLGEALSSDKIVEPTR----APLIPGMEAVKKAALEAGAYGCTISGAGPTAVAVIDD 327 (370)
T ss_pred hHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHH----hhhCccHHHHHHHHHHCCCeEEEEEccchheEEEEcC
Confidence 111111 12345678999999999999998653333222 14468888 9999999999 99999999999999975
Q ss_pred CcchHHHHHHHHHH
Q 043436 282 GPSQVELLEDACRK 295 (302)
Q Consensus 282 ~~~~~~~~~~~l~~ 295 (302)
++.++++.+++++
T Consensus 328 -~~~a~~i~~~l~~ 340 (370)
T PLN02451 328 -EEKGEEVGERMVE 340 (370)
T ss_pred -HHHHHHHHHHHHH
Confidence 5556666666643
No 24
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=2.2e-25 Score=198.39 Aligned_cols=261 Identities=16% Similarity=0.116 Sum_probs=175.2
Q ss_pred CceEEEEEeeCCc-----eeEeccC-CCCcceeccchh--hhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCce
Q 043436 2 NFWASVKLEPSDD-----LVIKPHP-VHDLVQFQSLHH--LMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNF 73 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~ 73 (302)
|++++|..++.|. .++...+ +.|.++++..+. +.......+.....|++..++..+.+.+ +. ..++
T Consensus 16 NL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~~~~~~~~~~Nlv~~a~~~~~~~~---~~---~~~~ 89 (296)
T PRK14615 16 NLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTCTIPDLDPERNTVTRAYTAFAAAT---GF---RPPL 89 (296)
T ss_pred EeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEECCCCCCCCccHHHHHHHHHHHHh---CC---CCCe
Confidence 6677777776553 6777887 588888875432 1111111112234699999998887754 33 2579
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeecccc
Q 043436 74 TLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEH 153 (302)
Q Consensus 74 ~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~ 153 (302)
+|+|.++||.++|||||||+++|++.+++++++++ ++.+++.+++..+ |. |++++.+||..+..- .
T Consensus 90 ~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~--l~~~~l~~~a~~~--------ga-DvPffl~gg~a~~~G-~-- 155 (296)
T PRK14615 90 EVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHP--LSPEALAKLAAGV--------GA-DVPFFLHNVPCRATG-I-- 155 (296)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHh--------CC-CCeeeccCCCEEEEe-e--
Confidence 99999999999999999999999999999999999 9999999999887 44 899888899877541 1
Q ss_pred ccccCcccccccCCCCCC--CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 043436 154 MDELGHGIYKPMDIDLLP--PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAEL 231 (302)
Q Consensus 154 ~~~~g~~~~~~l~~~~~~--~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~ 231 (302)
|. .+.+++.+ .| +++|++|+.+.+|+++++.+.......+.. ..... .....+......+|...++..
T Consensus 156 ----Ge-~~~~l~~~-~~~~~~vl~~P~~~vsT~~a~~~~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~~ 225 (296)
T PRK14615 156 ----GE-ILTPVALG-LSGWTLVLVCPEVQVSTPWAYAAWDAANAKQIAA---SSRKQ-NRLRGCLTTEGVADRNPLSRG 225 (296)
T ss_pred ----Ee-EEEECCCC-CCCcEEEEECCCCCcChHHHHHHhhhhccccccc---ccccc-cchHHHHHhhhccchhhhhhh
Confidence 11 24555422 12 588888999999999987654322110000 00000 001112233333444333222
Q ss_pred --H-HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 232 --M-NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 232 --~-~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
+ +.-...+. -..|+++ +++.+.+.|+ +++|||||+|+|+++.+ ++.++++.+++++.|..+
T Consensus 226 ~~l~ndle~~~~-------~l~P~l~~~~~~~~~~GAlga~mSGSGptvfaL~~~-~~~a~~i~~~l~~~g~~~ 291 (296)
T PRK14615 226 LWLHNSFEPVVF-------AAHPELRRLKETLLRHGAAAALMSGSGSSVFGLFRR-RAQAEAAFEMLKGHNIRV 291 (296)
T ss_pred hhccccchhHhH-------HhChHHHHHHHHHHhcCCCEEEEeccCcceEEEeCC-HHHHHHHHHHHhhhccce
Confidence 1 11112221 1347887 9999999999 99999999999999986 677899999999988764
No 25
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=6.1e-25 Score=195.20 Aligned_cols=250 Identities=15% Similarity=0.165 Sum_probs=171.6
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchhhhhhhccCC-ccchHHHHHHHHHHHHHHhHhcCCCCCCCceEE
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHHLMNRLQNEG-YYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTL 75 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i 75 (302)
|+++.|.-++.+. .++.+.++.+.++++..+.......... ..+..|++..+++.+.+++ +. ..+++|
T Consensus 13 NL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~~~~i~~~~~~~p~~~~nl~~~a~~~~~~~~---~~---~~~~~I 86 (287)
T PRK14616 13 NLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSDTISMSCTNLDLPVDDSNLCIRAAKALQEYA---GV---SKGVSI 86 (287)
T ss_pred EeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECCCEEEEeCCCCCCCCccHHHHHHHHHHHHHh---CC---CCCeEE
Confidence 5677776665443 6777888888887764321111000111 1234689989988888765 33 357999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeee-ecCeeEEeeccccc
Q 043436 76 SYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQV-YGGLVHMDFRKEHM 154 (302)
Q Consensus 76 ~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~-~Gg~~~~~~~~~~~ 154 (302)
+|+++||.++|||||||+++|++.+++++++.+ ++.+++.++|..+ |. |++++. +||+++.....
T Consensus 87 ~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~--ls~~el~~~a~~i--------g~-Dvp~~l~~gg~~~~~g~g--- 152 (287)
T PRK14616 87 TLDKRVPFGAGLGGGSSDAATVLRVLNELWEIN--APSADLHRLAVKL--------GA-DVPYFLEMKGLAYATGIG--- 152 (287)
T ss_pred EEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-CcceEeccCCcEEEEEcC---
Confidence 999999999999999999999999999999999 9999999999988 44 777666 48877543211
Q ss_pred cccCcccccccCCCCCC-CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHH
Q 043436 155 DELGHGIYKPMDIDLLP-PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILE-KNYSKLAELM 232 (302)
Q Consensus 155 ~~~g~~~~~~l~~~~~~-~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~-~d~~~~~~~~ 232 (302)
. .+.+++.. .+ ++++++|+...+|.++++.+........ .....+..++.. ++++.++.++
T Consensus 153 ----~-~~~~~~~~-~~~~~vvv~P~~~vsT~~a~~~l~~~~~~~~-----------~~~~~l~~~l~~~~~~~l~~~~~ 215 (287)
T PRK14616 153 ----D-ELEDLQLT-LPFHIVTVFPEEHISTVWAYKNFYRRFERER-----------PDLKTLVRRLCLDGDTSVLPAFE 215 (287)
T ss_pred ----c-eeEECCcC-CCcEEEEECCCCCcCHHHHHHHhhhhcccCC-----------chHHHHHHHHhcCCHHHHHHHhc
Confidence 1 23333221 12 6888889999999998876643322110 011223344433 5566655554
Q ss_pred HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 233 NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
++-+..+..+ .|+++ +.+.+++.|+ ++.|||||+|+++++++ .+.++++.+.+++.
T Consensus 216 nD~e~~~~~l-------~p~l~~v~~~~~~~Galg~~lSGSGptv~al~~~-~~~a~~i~~~l~~~ 273 (287)
T PRK14616 216 NDFESAVFDH-------YPAVRKVKDDLLEAGSFFASLSGSGSAVFGLFEN-EADAEAAAEMMRAR 273 (287)
T ss_pred CccHHHHHHh-------ChHHHHHHHHHHhCCCCeEEEecccccceEEeCC-HHHHHHHHHHhHHh
Confidence 4334444433 37777 8899999999 99999999999999985 56788888888754
No 26
>PRK01123 shikimate kinase; Provisional
Probab=99.94 E-value=4.4e-25 Score=195.57 Aligned_cols=207 Identities=22% Similarity=0.228 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-
Q 043436 47 VRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK- 125 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~- 125 (302)
.+++..+++.+.+++ +. +.|++|.++++||.++|||||||+++|++.|++++++.+ ++.++++++|..+|.
T Consensus 56 ~~~v~~~~~~~~~~~---~~---~~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~--l~~~el~~la~~~e~~ 127 (282)
T PRK01123 56 TRLIERCVELVLERF---GI---DYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGED--LDDLDILRLGVKASRD 127 (282)
T ss_pred chHHHHHHHHHHHHh---CC---CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHhhcc
Confidence 489999888887754 33 248999999999999999999999999999999999999 999999999999998
Q ss_pred HcC-CCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHH
Q 043436 126 ELG-IVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIIS 204 (302)
Q Consensus 126 ~~g-~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 204 (302)
..+ ..+|.+|+++++|||+++.+..... .+.+++.+ + ++++++|+.+.+|.+....+
T Consensus 128 ~~~~~~g~~~d~~~~~~GG~~~~~~~~~~-------~~~~~~~~-~-~~vv~~p~~~~~T~~~r~~~------------- 185 (282)
T PRK01123 128 AGVTVTGAFDDACASYFGGVTVTDNREMK-------LLKRDEVE-L-DVLVLIPPEGAFSASADVER------------- 185 (282)
T ss_pred ccccccCchhHHHHHHhCCEEEEcCCCce-------EEEEecCC-c-EEEEEECCCCcchhhhhhhh-------------
Confidence 433 3588999999999999876422110 12233221 3 68899999888887643221
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhhcCCCCCCCccHHHHHHHHHcCC-ceeecCCCceEEEEeeCC
Q 043436 205 SMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLR-RRMFGDDVLGALNIEMVEIARRFGA-ASKFTGSGGAVIAFCPNG 282 (302)
Q Consensus 205 ~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~-~~l~~~~~~~~~~l~l~~~a~~~g~-gaklsGaGg~~~al~~~~ 282 (302)
+..+..+.+++.++++++|+. ++|+.++.+. +. +. +..+++..+++.|+ |+++||+|||++++++
T Consensus 186 -l~~~~~~~d~~~~~~~~~~l~---~~~~~~~l~~~~~------l~-~~~~~i~~a~~~Ga~ga~lSGaGptv~al~~-- 252 (282)
T PRK01123 186 -MKLIAPYVDMAFELALDGEYF---KAMTLNGLLYSSA------LG-FPTEPALEALEAGAVGVGLSGTGPSYVAIVD-- 252 (282)
T ss_pred -chhcCcHHHHHHHHHhhccHH---HHHHhCCchhhhh------hC-CChHHHHHHHHCCCeEEEEecCCCeEEEEeC--
Confidence 111223445556666778875 5666553221 11 22 22356777888999 9999999999999997
Q ss_pred cchHHHHHHHHHHc
Q 043436 283 PSQVELLEDACRKA 296 (302)
Q Consensus 283 ~~~~~~~~~~l~~~ 296 (302)
++..+++.++|++.
T Consensus 253 ~~~~~~v~~~l~~~ 266 (282)
T PRK01123 253 EEDPEEVKEAWEKY 266 (282)
T ss_pred CCCHHHHHHHHHhC
Confidence 45678888888775
No 27
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=5.2e-25 Score=195.52 Aligned_cols=248 Identities=19% Similarity=0.139 Sum_probs=169.4
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchh--hhhhhccC-C-ccchHHHHHHHHHHHHHHhHhcCCCCCCCc
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHH--LMNRLQNE-G-YYGGVRLVMAICKVFFKYCKDNKIDLHKGN 72 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g 72 (302)
|+++.|+-++.|. .+|.+.++.|.++++..+. +....... . ..++.|++++++..+.+.+ |.. ..|
T Consensus 16 NL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~i~~~~~~~~~ip~~~~Nlv~ka~~~~~~~~---g~~--~~~ 90 (290)
T PRK14608 16 NLALHVTGRRADGYHLLESLVAFADVGDRLTLEPAEALSLTVSGPFAAGLGDGDDNLVLRAARALRARV---GPG--LPP 90 (290)
T ss_pred EeeeccCCCCCCCCcceeEEEEECCCCcEEEEEECCCCcEEEeCCCccCCCCCCCcHHHHHHHHHHHHh---CCC--CCc
Confidence 6777787776553 7888999999988875331 21111110 1 1235699999998888754 211 257
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccc
Q 043436 73 FTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKE 152 (302)
Q Consensus 73 ~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 152 (302)
++|+|.++||.++|||||||+++|++.+++++++++ ++.+++.++|..+ |. |++++++||+++..-..
T Consensus 91 ~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~--ls~~el~~la~~i--------g~-dv~~~l~gg~~~~~g~g- 158 (290)
T PRK14608 91 GAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLA--LDDERLAALALSL--------GA-DVPVCLDSRPLIMRGIG- 158 (290)
T ss_pred eEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-CcchhhcCCeEEEEecC-
Confidence 999999999999999999999999999999999999 9999999999987 44 99999999998764211
Q ss_pred cccccCcccccccCC-CCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHH
Q 043436 153 HMDELGHGIYKPMDI-DLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAIL--EKNYSKLA 229 (302)
Q Consensus 153 ~~~~~g~~~~~~l~~-~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~--~~d~~~~~ 229 (302)
. .+.+++. +.+ +++|++|+.+.+|.++++.+..............+.+ ...+..++. .+|++.
T Consensus 159 ------~-~~~~l~~~~~~-~~vv~~p~~~~sT~~~~~~l~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~ndle~-- 224 (290)
T PRK14608 159 ------E-ELTPLPGLPSL-PAVLVNPGVPVATPDVFRALGLRDGPPLPGAPDPLAS----ADALLAALAATRNDLEP-- 224 (290)
T ss_pred ------C-EeEECCCCCCc-EEEEECCCCCcChHHHHHhhccccCCcchhhhhhhhh----hhhHHHHHHhccCccHH--
Confidence 1 2444432 112 6889999999999998876542111000000001111 111122221 223221
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHc-CC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 230 ELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRF-GA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~-g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
... -..|+++ +.+.+++. |+ +++|||||+|+++++++ ++.++++.+.+++.
T Consensus 225 --------~~~-------~l~p~l~~i~~~~~~~~Ga~~~~lSGSGstvf~l~~~-~~~a~~~~~~l~~~ 278 (290)
T PRK14608 225 --------PAL-------ALAPVIGEVLAALRAQPGALLARMSGSGATCFALFAD-EAAAEAAAAAIAAA 278 (290)
T ss_pred --------HHH-------HcCcHHHHHHHHHHhcCCCCeeEEeccccCeEEEeCC-HHHHHHHHHHhHhh
Confidence 111 1247887 89999999 99 99999999999999975 56678888888765
No 28
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=6.2e-25 Score=193.93 Aligned_cols=237 Identities=18% Similarity=0.187 Sum_probs=165.5
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEE
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLS 76 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~ 76 (302)
|++++|..++.+. .++.+.++.+.++++..+.............+.|++.++++.+.+.+ |. ..|++|+
T Consensus 11 NL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~~~i~~~~~~~~~~~n~v~~a~~~~~~~~---g~---~~~~~i~ 84 (275)
T PRK14611 11 NLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHHTLEVKTSSPQIKEEENIVYKALRLFERYT---GI---DINYSIF 84 (275)
T ss_pred EeeeccCcCCCCCcchhhheeEeccCCcEEEEEECCcEEEEeCCCCCCCcccHHHHHHHHHHHHh---CC---CCCeEEE
Confidence 6777787776543 67888888888888653322111111111225799999998877654 33 2579999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccccccc
Q 043436 77 YDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDE 156 (302)
Q Consensus 77 i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~ 156 (302)
|+++||+++|||||||++||++.|++++++++ ++.+++.++|..+| . |.+++++||++++.....
T Consensus 85 i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~--l~~~~l~~la~~i~--------~-D~~~~~~Gg~~~~~~~g~---- 149 (275)
T PRK14611 85 IEKNIPVGAGLGGGSSNAAVVLKYLNELLGNP--LSEEELFELASSIS--------A-DAPFFLKGGFALGRGIGD---- 149 (275)
T ss_pred EEeCCCCcCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHhC--------C-CCCeeecCCeEEEeccCc----
Confidence 99999999999999999999999999999999 99999999999874 2 888899999998652111
Q ss_pred cCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-H
Q 043436 157 LGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNH-N 235 (302)
Q Consensus 157 ~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~-~ 235 (302)
...+++......+++++|+.+.+|+++++.++..+...+ .....+..++.++|++.+...+.+ -
T Consensus 150 ----~~~~~~~~~~~~~vv~~p~~~~sT~~~~~~l~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~n~l 214 (275)
T PRK14611 150 ----KLEFLEKPISREITLVYPNIKSSTGRVYSKVTKQILTNK-----------EDLNIIISLLREGEEKKIEEVIENTL 214 (275)
T ss_pred ----eeEECCcCCCcEEEEEeCCCCCChHHHHHhcchhhccCc-----------chHHHHHHHHHcCCHHHHHHhcCCcc
Confidence 233443211116899999999999998876543321111 223445678888998877666432 1
Q ss_pred HHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCCceEEEEeeC
Q 043436 236 FDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSGGAVIAFCPN 281 (302)
Q Consensus 236 ~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaGg~~~al~~~ 281 (302)
|+-... ..|++. +.+..++.|+++.|||||+++++++++
T Consensus 215 ~~~~~~-------~~P~l~~~~~~l~~~~~~~~~SGSG~tvf~l~~~ 254 (275)
T PRK14611 215 GEIALE-------LYPEIKEVYRFLEYLGYKPFVSGSGSSVYVFGKP 254 (275)
T ss_pred cHHHHH-------HCHHHHHHHHHHHhCCCCEEEeCccccceeEeCC
Confidence 221121 236666 666665555688899999999999964
No 29
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.94 E-value=1e-24 Score=193.90 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=166.1
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccch--hhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceE
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLH--HLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFT 74 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~ 74 (302)
|++..|+-++.+. +++...++.|.+.+...+ .+.............|++.++++.+.+++.... .. ..|++
T Consensus 11 NL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~i~~~~~~~~~~~~~nlv~~a~~~l~~~~~~~~-~~-~~~~~ 88 (293)
T TIGR00154 11 NLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDDIRLLKGDFDVPLEENLIYRAAQLLKNFANSKI-KS-LDGAN 88 (293)
T ss_pred EEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHhcccc-cC-CCCeE
Confidence 4556666554442 677777777777776432 111110011111113999999998887653211 01 25899
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccccc
Q 043436 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHM 154 (302)
Q Consensus 75 i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~ 154 (302)
|.|+++||.++|||||||+++|++.+++++++++ ++.++++++|..+ |. |++++++||+++..-.
T Consensus 89 i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~--l~~~~l~~la~~l--------g~-Dv~~~~~gg~~~~~g~---- 153 (293)
T TIGR00154 89 IEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLG--LSLEELAELGLTL--------GA-DVPFFVSGHAAFATGV---- 153 (293)
T ss_pred EEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-CcceEEECCeEEEEec----
Confidence 9999999999999999999999999999999999 9999999999887 44 8999999999876521
Q ss_pred cccCcccccccCC-CCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 043436 155 DELGHGIYKPMDI-DLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMN 233 (302)
Q Consensus 155 ~~~g~~~~~~l~~-~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~ 233 (302)
|. .+.+++. ..+ .+++++|+.+.+|+++++.+.. ....+. ....+..++..++++.+...+.
T Consensus 154 ---ge-~~~~l~~~~~~-~~vl~~p~~~~sT~~~~~~l~~-~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~ 216 (293)
T TIGR00154 154 ---GE-IITPFEDPPEK-WVVIAKPHVSISTPVVYQAYKL-PRNTPK-----------RAKEWLKKISLECLQLLDSNGL 216 (293)
T ss_pred ---Cc-EEEECCCCCCc-EEEEEcCCCCcChHHHHHhhhh-cccCcc-----------hhHHHHHHHhhccHHHHhhhhc
Confidence 11 2344432 111 5888889999999999876641 111111 1122334444555544433221
Q ss_pred HHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHH
Q 043436 234 HNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACR 294 (302)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~ 294 (302)
+ ++ +... ....|+++ +++.+++.|+ +++|||||+|+|+++++ ++.++++.+.++
T Consensus 217 n--dl-e~~~---~~~~p~l~~i~~~l~~~Ga~~a~mSGSG~tvf~l~~~-~~~a~~~~~~~~ 272 (293)
T TIGR00154 217 N--DL-EKVA---LKRHTEVAQALNWLLEYGLAPERLSGSGACVFALFDM-ESEAEQVLEQAP 272 (293)
T ss_pred C--cc-HHHH---HhcCHHHHHHHHHHHhCCCCeEEEeccccceEEEeCC-HHHHHHHHHHhH
Confidence 1 11 1111 12458887 9999999999 99999999999999986 555667766554
No 30
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=5.4e-25 Score=194.68 Aligned_cols=246 Identities=15% Similarity=0.119 Sum_probs=169.6
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchh--hhhhhccCC-ccchHHHHHHHHHHHHHHhHhcCCCCCCCce
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHH--LMNRLQNEG-YYGGVRLVMAICKVFFKYCKDNKIDLHKGNF 73 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~ 73 (302)
|+++.|+.++.+. .+|.+.++.+.++++..+. +........ ..+..|++.++++.+.+.+ +. ..|+
T Consensus 13 Nl~L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~~~~~~~i~~~~~~~p~~~~nl~~~a~~~~~~~~---~~---~~~~ 86 (280)
T PRK14614 13 NYRLDVLRRRPDGYHDLRMIMQRVDLCDEIEIALSDGPGIRVTCGREGVPDGPGNIAWRAADALLDLS---GR---EVGI 86 (280)
T ss_pred EeeeccCCCCCCCcChhheEeEECCCCeEEEEEECCCCCEEEEeCCCCCCCCCCcHHHHHHHHHHHHh---CC---CCce
Confidence 5677777776553 7888889988888874331 111100111 1234699999998888754 33 2479
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeecccc
Q 043436 74 TLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEH 153 (302)
Q Consensus 74 ~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~ 153 (302)
+|+|.++||.++|||||||+++|++.+++++++.+ ++.+++.++|..+ |. |++++++||..+.....
T Consensus 87 ~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~--l~~~~l~~~a~~~--------G~-Dv~~~l~gg~~~~~g~g-- 153 (280)
T PRK14614 87 DISITKNIPVAAGLGGGSSDAATVLMGVNELLGLG--LSDERLMEIGVKL--------GA-DVPFFIFKKTALAEGIG-- 153 (280)
T ss_pred EEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-CcceeeeCCcEEEEEcC--
Confidence 99999999999999999999999999999999999 9999999999865 44 99999999988754211
Q ss_pred ccccCcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 043436 154 MDELGHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELM 232 (302)
Q Consensus 154 ~~~~g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~ 232 (302)
. .+.+++.. .+ .+++++|+...+|+++++.++.............+.. .. ...++..+|++.+.
T Consensus 154 -----e-~~~~l~~~~~~-~ivl~~p~~~~sT~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~ndle~~~--- 218 (280)
T PRK14614 154 -----D-KLTAVEGVPPL-WVVLVNPGLHVSTAWVYQNLRLTSRKDLAIIPRFFGS----VA-EVCALLSNDLESVT--- 218 (280)
T ss_pred -----c-eeEECCCCCCc-EEEEECCCCCCCHHHHHhcccccccCcchhhhhhhhh----HH-HHhhhcccCcHHHH---
Confidence 1 23444321 11 5888999999999999876543221111111111111 11 11244456665432
Q ss_pred HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 233 NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
. -..|.++ +++.+++.|+ +++|||||||+++++++ .+.++++.+++++.
T Consensus 219 -------~-------~~~p~l~~i~~~~~~~Galga~lSGSG~tv~~l~~~-~~~~~~~~~~l~~~ 269 (280)
T PRK14614 219 -------I-------GRFPVIGEIKEELLAAGARGSLMSGSGSTVFGLFDD-EAAARAAAEELSRE 269 (280)
T ss_pred -------H-------hcChHHHHHHHHHHhCCCCEEEEeccccceEEEeCC-HHHHHHHHHHhhhc
Confidence 0 1247787 9999999999 99999999999999985 45577888887664
No 31
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=1e-24 Score=194.12 Aligned_cols=254 Identities=13% Similarity=0.113 Sum_probs=175.3
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccch--hhhhhhccCC----------c----cchHHHHHHHHHHHHHH
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLH--HLMNRLQNEG----------Y----YGGVRLVMAICKVFFKY 60 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~--~~~~~~~~~~----------~----~~~~~~v~~~~~~~~~~ 60 (302)
|++++|..++.+. .+|.+.++.|.+.++..+ .+.....+.. . ....|++.++++.+.+.
T Consensus 8 NL~L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nlv~ka~~~~~~~ 87 (297)
T PRK14613 8 NLGLEIPFKREDGFHEIRSVFLKISWGDDIEIEPAPNGVFELFSTNEIILEKRKLYDQVSERGDIKQNILYKTFIKARSL 87 (297)
T ss_pred eeeecCCCcCCCCcceeeeEEEEeccCCEEEEEECCCCcEEEEecccccccccccccccCCCCCcccchHHHHHHHHHHH
Confidence 6788887776553 788999999999987432 1111101000 0 12369999999999876
Q ss_pred hHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCc-ccHhHHHHHHHHHcCCCCCccceeee
Q 043436 61 CKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKV-EIRPNLILNAEKELGIVAGLQDRVAQ 139 (302)
Q Consensus 61 ~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~-~el~~la~~~E~~~g~~~g~~D~~~~ 139 (302)
+ +. ..|++|+|+++||.++|||||||.+++++.+++..++ ++. +++.++|..+ |. |++++
T Consensus 88 ~---~~---~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~----l~~~e~L~~lA~~l--------Ga-DvP~~ 148 (297)
T PRK14613 88 F---PE---LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRN----FFTSDEMQVFAKEI--------GS-DVPFF 148 (297)
T ss_pred h---CC---CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHh--------CC-ccchh
Confidence 5 33 2579999999999999999999999999888887654 544 5666799877 44 89888
Q ss_pred eecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHH
Q 043436 140 VYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAA 219 (302)
Q Consensus 140 ~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a 219 (302)
++|+..+.+ +. |. .+.+++.+. ..+++++|+...+|+++++.+.......... ..++.....+..+
T Consensus 149 l~G~~a~~~-g~------Ge-~~~~l~~~~-~~~vlv~P~~~vsT~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~a 214 (297)
T PRK14613 149 LGEGHAFVT-GK------GE-IMEEIEVHK-GQGILALTPQVMNTGEMYALLKKPLQESASQ-----KNGNTLSEDLISS 214 (297)
T ss_pred hcCCeEEEe-cC------Cc-EEEEcCCCC-CeEEEEECCCCcChHHHHHhcchhhcccccc-----ccccccHHHHHHH
Confidence 888865543 11 11 244554321 1357888999999999987664432111110 0111223456778
Q ss_pred HHccCHHHHHHHH-HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 220 ILEKNYSKLAELM-NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 220 l~~~d~~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
+..+|++.+...| +..+..+..+ .|+++ +.+.+++.|+ +++|||||+|+|+++++ ++.++++.+.+++.
T Consensus 215 l~~~~~~~l~~~l~ndle~~~~~l-------~P~~~~i~~~~~~~Ga~~~~mSGSGptvf~l~~~-~~~a~~~~~~l~~~ 286 (297)
T PRK14613 215 LKVGDWVSLQGRLENDFEPVAFQL-------HPELGVLKDKFLEFGSSYCSLTGSGSSMYGLVQG-LEIQEELLPRLRQE 286 (297)
T ss_pred HHcCCHHHHHHHhcccchHHHHHh-------CcHHHHHHHHHHHcCCCEEEEEccccceEEEeCC-HHHHHHHHHHHHHh
Confidence 8899998875544 5555555443 37787 8899999999 99999999999999985 56778888887653
No 32
>PRK01212 homoserine kinase; Provisional
Probab=99.93 E-value=9.4e-25 Score=195.63 Aligned_cols=216 Identities=19% Similarity=0.182 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
..|++.+++..+.+.+ |. ..|++|+|+++||.++|||||||+++|++.|++++++++ ++.++|.++|.++|.
T Consensus 61 ~~Nli~~a~~~~~~~~---~~---~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~--l~~~eL~~~a~~~e~ 132 (301)
T PRK01212 61 EKNLVYQAALKFLEKL---GK---PPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLP--LSKEELLQLATEGEG 132 (301)
T ss_pred ccccHHHHHHHHHHHc---CC---CCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhcC
Confidence 3589999998887754 33 257999999999999999999999999999999999999 999999999999975
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISS 205 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 205 (302)
+.+|++++++||++++.... |. .+.+++...-.++++++|+...+|.++++.+.. ..+ ....
T Consensus 133 ------~~ddv~~~l~GG~~~~~~g~------g~-~~~~~~~~~~~~~vlv~p~~~~sT~~a~~~l~~---~~~--~~~~ 194 (301)
T PRK01212 133 ------HPDNVAPALLGGLVLALEEN------GV-ISVKIPVFDDLKWVVAIPNIELSTAEARAVLPK---QYS--LKDA 194 (301)
T ss_pred ------CHHHHHHHHhCCEEEEEECC------ce-EEEEecCCCCeEEEEEECCCcCCHHHHHHhCcC---cCC--HHHH
Confidence 55689999999999864111 11 244443211115888999998999988764321 111 0111
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCC
Q 043436 206 MKEVAQMAAEGQAAILEKNYSKLAELMNHN-FDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNG 282 (302)
Q Consensus 206 ~~~i~~~~~~~~~al~~~d~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~ 282 (302)
...+ ..+..+..+|.++|++.+++.|++. |+..+ ....|+++ +++.+++.|+ +++|||+|||+++++++
T Consensus 195 ~~~~-~~~~~l~~al~~~d~~~~~~~~~~~~~~~~~------~~~~p~~~~i~~~~~~~Ga~g~~~SGsGptv~~l~~~- 266 (301)
T PRK01212 195 VFNS-SRAALLVAALYTGDYELAGRAMKDVLHEPYR------AKLIPGFAEVRQAALEAGALGAGISGAGPTVFALCDK- 266 (301)
T ss_pred HHHH-HHHHHHHHHHhhCCHHHHHHHhchhheHHhH------HhhCCCHHHHHHHHHHCCCeEEEEEchhhheeEEecc-
Confidence 2222 2345678899999999999998543 22211 11247887 9999999999 99999999999999975
Q ss_pred cchHHHHHHHHHHc
Q 043436 283 PSQVELLEDACRKA 296 (302)
Q Consensus 283 ~~~~~~~~~~l~~~ 296 (302)
.+. +++.+.+++.
T Consensus 267 ~~~-~~~~~~l~~~ 279 (301)
T PRK01212 267 EDA-EKVADALQKA 279 (301)
T ss_pred ccH-HHHHHHHHHh
Confidence 344 7777777654
No 33
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.93 E-value=8.4e-25 Score=195.76 Aligned_cols=201 Identities=17% Similarity=0.212 Sum_probs=145.6
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
..|+++++++.+.+++ |.+ ..|++|+|.++||.++|||||||+++|++.|++++++++ ++.+++.++|.++|.
T Consensus 59 ~~Nlv~~a~~~~~~~~---g~~--~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~--l~~~el~~~a~~~E~ 131 (302)
T TIGR00191 59 TDNLIYQVAKRFLDQL---GIR--MPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLP--LSKERLLDYASELEG 131 (302)
T ss_pred ccccHHHHHHHHHHHc---CCC--CCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhcC
Confidence 3589999998888754 432 157999999999999999999999999999999999999 999999999999985
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCC--CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLP--PLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
+.+|++++++||++.+..... .+.+++....+ ++++++|+...+|+++.+.+...... .
T Consensus 132 ------h~Dnv~~~l~GG~~~~~~~~~--------~~~~~~~~~~~~~~~vl~~p~~~~sT~~a~~~lp~~~~~-----~ 192 (302)
T TIGR00191 132 ------HPDNVAPALLGGFQLAFVEDD--------KLEVLKIPIFSKLDWVLAIPNIEVSTAEARAVLPKAYPR-----Q 192 (302)
T ss_pred ------CcccHHHHhccCEEEEEEcCC--------ceEEEEeCCCCCEEEEEEECCCcccHHHHHHhCcccCCH-----H
Confidence 566789999999987643221 12232221111 68889999999999886543221110 1
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH---HHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEE
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHN---FDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAF 278 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~---~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al 278 (302)
+....+.. ...+..+|.+++.+ +++.+..+ +..+. ...|.++ +++.+++.|+ |++|||||||++++
T Consensus 193 ~~v~~~~~-~~~l~~al~~~~~~-l~~~~~~d~l~e~~~~-------~l~p~l~~i~~~~~~~Ga~g~~lSGsGptv~al 263 (302)
T TIGR00191 193 DLVFNLSH-LAGLVHAIYQKKPD-LGAIMMKDRIHQPYRE-------SLIPNLFKIKQAALEKGAYGITISGSGPTILAM 263 (302)
T ss_pred HHHHHHHH-HHHHHHHHHcCCHH-HHHHHcccccchhhHh-------hhCCCHHHHHHHHHHCCCeEEEEEchhhhheEE
Confidence 11112222 23356788888765 55555443 22222 2358887 9999999999 99999999999999
Q ss_pred eeC
Q 043436 279 CPN 281 (302)
Q Consensus 279 ~~~ 281 (302)
+++
T Consensus 264 ~~~ 266 (302)
T TIGR00191 264 ADE 266 (302)
T ss_pred ecc
Confidence 975
No 34
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=1.8e-24 Score=194.48 Aligned_cols=219 Identities=21% Similarity=0.225 Sum_probs=154.5
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
..|++.+++..+.+.+ +.+ ..|++|+|.++||.++|||||||+++|++.|++++++++ ++.++++++|..+
T Consensus 65 ~~n~~~~~~~~~~~~~---~~~--~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~--l~~~~l~~~a~~~-- 135 (312)
T PRK02534 65 DDNLIYRAAQLLRKRF---PFA--EGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLG--LTQPELESLAAEL-- 135 (312)
T ss_pred chhHHHHHHHHHHHHh---CCC--CCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--
Confidence 4689999998887754 332 257999999999999999999999999999999999999 9999999999887
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEE-EeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLI-YAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~-~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
|. |++++++||+++.. .+ |. .+.+++.. .+ +++++ .|+...+|+++++.++..+........
T Consensus 136 ------g~-dv~~~~~GG~~~~~-~~------g~-~~~~~~~~~~~-~~vv~~~p~~~~~T~~a~~~~~~~~~~~~~~~~ 199 (312)
T PRK02534 136 ------GS-DVPFCIAGGTQLCF-GR------GE-ILEPLPDLDGL-GVVLAKYPSLSVSTPWAYKTYRQQFGDTYLSDE 199 (312)
T ss_pred ------CC-CCcEEeECCeEEEE-CC------CC-EeEECCCCCCc-EEEEEECCCCCccHHHHHHHHhhhcccccccCc
Confidence 33 99999999998753 22 11 24444321 12 56666 588889999988766543321100000
Q ss_pred HHHHHHHH--HHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHH-HcCC-ceeecCCCceEEEE
Q 043436 204 SSMKEVAQ--MAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIAR-RFGA-ASKFTGSGGAVIAF 278 (302)
Q Consensus 204 ~~~~~i~~--~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~-~~g~-gaklsGaGg~~~al 278 (302)
.....+.. ....+..+|.++|++.+++.|++ .+++... -..|+++ +++.++ +.|+ ++.|||+|+|++++
T Consensus 200 ~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~~n--~l~~~~~----~~~~~i~~~~~~l~~~~Ga~~~~lSGsGptv~~l 273 (312)
T PRK02534 200 EDFEQRRQALRSGPLLQAISAKDPPPIAQLLHN--DLEKVVL----PEYPQVAKLLELLSSLPGCLGTMMSGSGPTCFAL 273 (312)
T ss_pred ccccccccccchhHHHHhhhccCHHHHHHhhhC--chHHHhH----hcChHHHHHHHHHHhccCCCeeEEECcCcceEEE
Confidence 00011111 12346788999999999887642 2333221 1346666 777777 8899 99999999999999
Q ss_pred eeCCcchHHHHHHHHHHc
Q 043436 279 CPNGPSQVELLEDACRKA 296 (302)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~ 296 (302)
+++ ++.++++.+++++.
T Consensus 274 ~~~-~~~a~~~~~~l~~~ 290 (312)
T PRK02534 274 FES-QEQAEQALEQVREA 290 (312)
T ss_pred eCC-HHHHHHHHHHHHHH
Confidence 985 55677777777653
No 35
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=4.2e-24 Score=186.26 Aligned_cols=219 Identities=20% Similarity=0.244 Sum_probs=162.1
Q ss_pred chHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHH
Q 043436 45 GGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124 (302)
Q Consensus 45 ~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E 124 (302)
++.|++..++..+.+.+ |++ .+++|+++++||.++|||||+|.+||.+.|+|++++.+ ++++++.+++...|
T Consensus 56 ~~~n~~~~~~~~~~~~~---~~~---~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~--L~~~~ll~~a~~~E 127 (299)
T COG0083 56 DPENLVYQAALKFLEAL---GIE---AGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLP--LSKEELLQLALEIE 127 (299)
T ss_pred CcceeHHHHHHHHHHHh---CCC---ccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHhc
Confidence 34468888777777643 553 34999999999999999999999999999999999999 99999999999998
Q ss_pred HHcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 125 ~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
. +.++++++++||+.+..... .+ ...+++++ ++ ++++++|+...+|+++.+-+...... ++..
T Consensus 128 g------HpDNVapa~lGG~~l~~~~~-~~------~~~~v~~~~~~-~~v~~iP~~e~sT~~aR~vLP~~~~~--~daV 191 (299)
T COG0083 128 G------HPDNVAPAVLGGLVLVEEES-GI------ISVKVPFPSDL-KLVVVIPNFEVSTAEARKVLPKSYSR--KDAV 191 (299)
T ss_pred C------CCchHHHHhhCCEEEEeecC-Cc------eEEEccCCcce-EEEEEeCCccccHHHHHHhccccCCH--HHHH
Confidence 6 89999999999977654211 11 12233321 23 78999999999999876654433221 1122
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH--HHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEe
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHN--FDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFC 279 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~ 279 (302)
... ..+.-++.||.++|.+.+..+|++. +.++..+. |.++ +.+.+.+.|+ |+.+||||+++++++
T Consensus 192 ~n~----s~~a~lv~al~~~~~~l~~~~~~D~ihepyR~~L~-------P~~~~v~~~a~~~gA~g~~lSGAGPTi~al~ 260 (299)
T COG0083 192 FNL----SRAALLVAALLEGDPELLRAMMKDVIHEPYRAKLV-------PGYAEVREAALEAGALGATLSGAGPTVFALA 260 (299)
T ss_pred HHH----HHHHHHHHHHHcCCHHHHHHHhccccchhhhhhhC-------ccHHHHHHHHhhCCceEEEEecCCCeEEEEe
Confidence 222 3455678899999977777777653 45665443 6676 8899999999 999999999999999
Q ss_pred eCCc--chHHHHHHHHHHcCCc
Q 043436 280 PNGP--SQVELLEDACRKAGFS 299 (302)
Q Consensus 280 ~~~~--~~~~~~~~~l~~~g~~ 299 (302)
++ . +....+.+.+.+.++.
T Consensus 261 ~~-~~~e~~~~~~~~~~~~~~~ 281 (299)
T COG0083 261 DE-SDAEKAAALLEELYEQGIK 281 (299)
T ss_pred cc-chhhHHHHHHHHHHHhCCc
Confidence 85 3 4566666666666544
No 36
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.93 E-value=3.9e-24 Score=185.36 Aligned_cols=248 Identities=19% Similarity=0.221 Sum_probs=169.1
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchhhhhhhc---cCCccchHHHHHHHHHHHHHHhHhcCCCCCCCce
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHHLMNRLQ---NEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNF 73 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~ 73 (302)
|++++|+-++.+. .+++..+++|.++++..+....... ..+.....|++++|++.+.+.+ +. ..|+
T Consensus 13 NL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~~~~~~~~~~~~~~~lp~~~NLv~rAa~ll~~~~---~~---~~~v 86 (289)
T COG1947 13 NLFLHVTGKRADGYHELETLFQFIDLGDELTIRPRDDDGFIVLGTFADGLPTDENLVYRAAELLRKRT---GI---AGGV 86 (289)
T ss_pred EEEEEecccCCCCceeeEEEEEEeccCCEEEEEECCCCCceEecCCCCCCCCcchHHHHHHHHHHHHh---CC---CCCe
Confidence 7889999988875 7889999999988886541111111 1112223399999999888765 32 3689
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeecccc
Q 043436 74 TLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEH 153 (302)
Q Consensus 74 ~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~ 153 (302)
+|.|+++||+++|||++||+++|++.+||++|+++ ++.+||..++.++ |. |+++|++||....+ +.
T Consensus 87 ~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~--ls~~eL~~Lg~~L--------Ga-DVPffl~g~tA~a~-G~-- 152 (289)
T COG1947 87 SIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLG--LSLEELAELGLRL--------GA-DVPFFLSGGTAFAE-GR-- 152 (289)
T ss_pred eEEEEecCcccCcCccchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHh--------CC-CcCeeeeCCceEEE-Ec--
Confidence 99999999999999999999999999999999999 9999999999988 76 99999999988765 11
Q ss_pred ccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-
Q 043436 154 MDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELM- 232 (302)
Q Consensus 154 ~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~- 232 (302)
|+ .++++......+++++.++...+|+++++. .......+. ......++...++..+....
T Consensus 153 ----GE-~l~~~~~~~~~~~vl~~P~v~vsT~~vy~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 214 (289)
T COG1947 153 ----GE-KLEPLEDPPEKWYVLAKPGVGVSTKEVYKD-PELTRNTPK------------SEPLIAALSLENLKQIAPFLI 214 (289)
T ss_pred ----cc-eeeECCCCCCceEEEEeCCCCCChHHHHcC-cCcccccCC------------chhhhHHHhhhhHhhhccccc
Confidence 22 456665211127888999999999999872 111111110 00011111222222222111
Q ss_pred HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHH
Q 043436 233 NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~ 295 (302)
|.-+..-..+ .|++. ......++|+ .++|||+|+|+|+++++ ++.++++.+.+.+
T Consensus 215 NdLe~~~~~~-------~p~v~~~~~~l~~~ga~~~~mSGSGstvF~l~~~-~~~a~~~~~~l~~ 271 (289)
T COG1947 215 NDLEKVALRL-------YPEVKEALSELLEYGALPARMSGSGSTVFALFDT-EKEAQRVAEQLPK 271 (289)
T ss_pred cchHHHHHHh-------ChHHHHHHHHHhhcccccceEecCCCcEEEEeCC-hHHHHHHHHHhhc
Confidence 1111111111 25555 4555556687 89999999999999986 6778888888765
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=3.5e-24 Score=189.30 Aligned_cols=244 Identities=18% Similarity=0.215 Sum_probs=164.3
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccch-hhhhhhccCC-ccchHHHHHHHHHHHHHHhHhcCCCCCCCceE
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLH-HLMNRLQNEG-YYGGVRLVMAICKVFFKYCKDNKIDLHKGNFT 74 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~ 74 (302)
|+++.|..++.+. ..+...++.+.++++..+ .+........ ..+..|++.+++..+.+.+ |. ..|++
T Consensus 12 Nl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~~~~i~~~~~~~p~~~~Nli~ka~~~~~~~~---g~---~~~~~ 85 (276)
T PRK14612 12 NLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIASGLELRVLGADLPTDERNLVYRAARAYLDAA---GQ---PGGVR 85 (276)
T ss_pred eeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCCcEEEEcCCCCCCCCCcccHHHHHHHHHHHh---CC---CCCeE
Confidence 4555555554332 566667777777665422 1111111111 1224689999888887754 43 25899
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccccc
Q 043436 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHM 154 (302)
Q Consensus 75 i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~ 154 (302)
|+|.++||+++|||||||+++|++.+++++++.+ ++ +.+++..+ |. |++++.+||+++..-.
T Consensus 86 I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~--l~---l~~ia~~~--------g~-dv~~~~~GG~~~~~g~---- 147 (276)
T PRK14612 86 ITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAP--VD---LPALALTL--------GA-DVPFFLLGGAAEARGV---- 147 (276)
T ss_pred EEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCC--hH---HHHHHHHh--------CC-CcCeeeeCCeEEEEec----
Confidence 9999999999999999999999999999999987 74 55666554 43 8999999999886421
Q ss_pred cccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHH-HhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 043436 155 DELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVR-QRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMN 233 (302)
Q Consensus 155 ~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~ 233 (302)
|. .+.+++...+ .++|++|+.+.+|+++++.++ ... +.. ..+..+..+|.++|...+...|
T Consensus 148 ---g~-~~~~l~~~~~-~~vv~~P~~~~sT~~a~~~l~~~~~---~~~---------~~~~~l~~~l~~~d~~~~~n~l- 209 (276)
T PRK14612 148 ---GE-RLTPLELPPV-PLVLVNPGVAVSARDAYRWLEPEDF---GPE---------LDVEAILAALARGEEPPYWNSL- 209 (276)
T ss_pred ---Cc-cceEcCCCCc-EEEEECCCCCCCHHHHHHhhccccC---CCc---------ccHHHHHHHHHhcccccccCCc-
Confidence 11 3555543222 689999999999999887652 111 100 1244455677777643222222
Q ss_pred HHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcC
Q 043436 234 HNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAG 297 (302)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g 297 (302)
+..+. ...|+++ +++.+++.|+ +++|||||+|+++++++ ++.++++.+.+++.+
T Consensus 210 --~~~~~-------~~~p~l~~i~~~l~~~Ga~~~~lSGsGptvfal~~~-~~~a~~~~~~l~~~~ 265 (276)
T PRK14612 210 --EGPVF-------ARHPELQEVLAALRAAGLRGVLMSGSGSTCFGLAED-AAQAQRAAAALRARH 265 (276)
T ss_pred --HHHHH-------HhChHHHHHHHHHHhCCCCEEEEcCcchhhEEEeCC-HHHHHHHHHHhHhhC
Confidence 22222 2357887 9999999999 99999999999999975 566788888887754
No 38
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=3.5e-24 Score=188.02 Aligned_cols=235 Identities=18% Similarity=0.222 Sum_probs=158.6
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccch--hhhhhhccCCc--cchHHHHHHHHHHHHHHhHhcCCCCCCCc
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLH--HLMNRLQNEGY--YGGVRLVMAICKVFFKYCKDNKIDLHKGN 72 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~g~~~~~~g 72 (302)
|++++|.-++.+. .++.+.++.|.+++...+ .+.....+... ..+.|++.+++..+.+.+ +. .+
T Consensus 10 NL~L~v~~~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~~~~~~~~~~Nlv~~a~~~~~~~~---~~----~~ 82 (269)
T PRK14609 10 NLGLNVVEKRPDGYHNLETVFYPIPLTDALEITVRSATKTSLTVSGIPIPGDPEDNLVVKAYNLLKKDF---PL----PP 82 (269)
T ss_pred EeeeccCCcCCCCcceeeEEEEECCCCcEEEEEEcCCCcEEEEeCCCCCCCCccccHHHHHHHHHHHHc---CC----CC
Confidence 6788888776553 788899999999887432 11111111111 234689999998887643 32 37
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccc
Q 043436 73 FTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKE 152 (302)
Q Consensus 73 ~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 152 (302)
++|++.++||.++|||||||+++|++.+++++++++ ++.+++.++|..+ |. |++++.+||..++. +.
T Consensus 83 ~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~--l~~~~l~~la~~i--------Ga-Dvpffl~g~~a~~~-G~- 149 (269)
T PRK14609 83 VHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLG--LSDEELEAYAATL--------GA-DCAFFIRNKPVYAT-GI- 149 (269)
T ss_pred eEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-CceEEccCCCEEEE-Ee-
Confidence 999999999999999999999999999999999999 9999999999877 54 99999999987754 11
Q ss_pred cccccCcccccccCCCCCC--CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Q 043436 153 HMDELGHGIYKPMDIDLLP--PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAE 230 (302)
Q Consensus 153 ~~~~~g~~~~~~l~~~~~~--~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~ 230 (302)
|+ .+.+++.. ++ ++++++|+...+|+++++.+.... +.. .+ .+.+. .+...+..
T Consensus 150 -----Ge-~l~~l~~~-~~~~~~vlv~P~~~~sT~~a~~~l~~~~---~~~---~~---~~~~~--------~~~~~~~~ 205 (269)
T PRK14609 150 -----GD-IFSPIDLS-LSGYYIALVKPDIHVSTAEAYAGIKPHK---PET---SL---KEIIR--------QPVEEWKN 205 (269)
T ss_pred -----CC-eeEECCCC-CCCCEEEEECCCCCCChHHHHHhhhhcC---cch---hh---HHHHh--------hHHHHHHh
Confidence 11 24454321 12 588999999999999988764321 110 00 01110 00101111
Q ss_pred HHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHH
Q 043436 231 LMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVE 287 (302)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~ 287 (302)
.+. .++...+. ...|+++ +++.+++.|+ +++|||||+|+++++++ +++.+
T Consensus 206 ~l~--Ndle~~~~----~~~p~l~~i~~~l~~~ga~~~~mSGSG~tvf~l~~~-~~~~~ 257 (269)
T PRK14609 206 KLV--NDFEDSVF----PKYPEIAEIKEKLYRSGALYAAMSGSGSSVFGIFKK-PPNLD 257 (269)
T ss_pred hcC--CChHHHHH----HcChHHHHHHHHHHhCCCCeEEEeCccceeEEEECC-hHHcC
Confidence 111 01111111 2357887 8899999999 99999999999999975 44333
No 39
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=8.9e-23 Score=179.35 Aligned_cols=239 Identities=15% Similarity=0.169 Sum_probs=162.8
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchh--hhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceE
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHH--LMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFT 74 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~ 74 (302)
|++++|.-++.|. .++.+.++.|.++++..+. +...........+.|++.++++.+.+.+ +. ..|++
T Consensus 16 NL~L~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~~~i~~~~~~~~~~~N~v~~a~~~l~~~~---~~---~~~~~ 89 (271)
T PRK00343 16 NLFLHITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGEIRLLTPIPGVPEEDNLIVRAARLLQKAT---GT---PLGAD 89 (271)
T ss_pred EEEeecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCcEEEeCCCCCCCCcccHHHHHHHHHHHHh---CC---CCCeE
Confidence 6677777676553 6788888888888864331 1111110112345799999998888754 33 25899
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccccc
Q 043436 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHM 154 (302)
Q Consensus 75 i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~ 154 (302)
|.|.++||.++|||||||.++|++.+++++++++ ++.+++.++|..+ |. |++++..|+..+.. ..
T Consensus 90 i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~--ls~~el~~la~~i--------ga-Dvp~~l~g~~~~~~-g~--- 154 (271)
T PRK00343 90 ISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLG--LSRDELAELGLKL--------GA-DVPVFVRGHAAFAE-GI--- 154 (271)
T ss_pred EEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-CceEEecCCcEEEE-ec---
Confidence 9999999999999999999999999999999999 9999999999876 44 88888888776543 11
Q ss_pred cccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 043436 155 DELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNH 234 (302)
Q Consensus 155 ~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~ 234 (302)
|. ...+++.+.. .++|++|+.+.+|+++++...... ..+. . . ...+......+|++.+..
T Consensus 155 ---g~-~~~~l~~~~~-~~vl~~p~~~~sT~~~~~~~~~~~-~~~~---~---~----~~~~~~~~~~Ndle~~~~---- 214 (271)
T PRK00343 155 ---GE-ILTPVDLPEK-WYLVVKPGVHISTAEIFSDPDLTR-DTPK---I---S----IADFLAGPFRNDCEPVVR---- 214 (271)
T ss_pred ---CC-EEEECCCCCc-EEEEEeCCCCcChHHHHhhhhhcc-CCCh---h---h----HHHHHhccccCCHHHHHH----
Confidence 11 2444432211 578888999999999886532111 1110 0 0 111112222455554432
Q ss_pred HHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 235 NFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
.+ .|+++ +.+.+.+.|+ +.|||+|+|+|+++++ ++.++++.+.+++.
T Consensus 215 ------~~-------~P~~~~~~~~l~~~ga-~~mSGSG~tvF~l~~~-~~~a~~~~~~l~~~ 262 (271)
T PRK00343 215 ------KR-------YPEVAQALSWLLEYAP-SRMTGTGACVFAEFDT-EAEAEQVLAQLPEW 262 (271)
T ss_pred ------Hh-------ChHHHHHHHHHHhCCC-eEEeccccceEEEcCC-HHHHHHHHHHhhhh
Confidence 11 26666 7777888888 8899999999999986 67778888877643
No 40
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=8.1e-23 Score=180.81 Aligned_cols=244 Identities=15% Similarity=0.144 Sum_probs=162.7
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchh---hhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCce
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHH---LMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNF 73 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~ 73 (302)
|++++|..++.+. .+|.+.++.|.++++..+. +... ...+..+..|++++|++.+.+.+ +. ..|+
T Consensus 13 NL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~-~~~~~~~~~Nlv~kA~~~l~~~~---~~---~~g~ 85 (283)
T PRK14610 13 NLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIGSKNRGVEFV-NSLKINRYNNTVQRAIGLLLRHS---PV---RTNV 85 (283)
T ss_pred EeeeccCCcCCCCcchhheeeEEcCCCCEEEEEECCCCCeEEEe-CCCCCCCCCcHHHHHHHHHHHHh---CC---CCCe
Confidence 6778888776553 6788889999988875431 1111 11122334799999999988754 33 2489
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeecccc
Q 043436 74 TLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEH 153 (302)
Q Consensus 74 ~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~ 153 (302)
+|+|+++||.++|||||||+++|++.+++++|+ ++.+++.+++..+ |. |++++++||..+.. +.
T Consensus 86 ~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~----ls~~~l~~ia~~l--------Ga-DvPffl~g~~a~~~-G~-- 149 (283)
T PRK14610 86 YVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG----IDEQILNELALSV--------GS-DVPACLDSKTLFVR-GI-- 149 (283)
T ss_pred EEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC----CCHHHHHHHHHHh--------CC-CCcEEEECCeEEEE-ec--
Confidence 999999999999999999999999999999994 7789999999886 76 99999999998765 11
Q ss_pred ccccCcccccccCCCCCC-CEEEEEe-CCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH-
Q 043436 154 MDELGHGIYKPMDIDLLP-PLYLIYA-ENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAE- 230 (302)
Q Consensus 154 ~~~~g~~~~~~l~~~~~~-~~~l~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~- 230 (302)
|+ .+.+++...++ +++|+.+ +.+.+|.++++.+.......+. ... .+..+++..+..
T Consensus 150 ----Ge-~l~~l~~~~~~~~~vl~~p~~~~~sT~~vy~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~~ 209 (283)
T PRK14610 150 ----GE-DILLLPDLSLPTYVVLVAPKGKFLSTRKVFNKYECKAFSEPI---DNL------------PVAQDDLLELLKE 209 (283)
T ss_pred ----cc-EEEECcccCCCCeEEEEECCCCccChHHHHHhhcccccCCcc---ccc------------ccchhHHHHHHHH
Confidence 22 35565421133 5777777 5778999998765311100000 000 011112211111
Q ss_pred HHHHHHHHHHhhcCCCCCCCccHH-HHHHHHH-cCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 231 LMNHNFDLRRRMFGDDVLGALNIE-MVEIARR-FGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~-~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
..|.-...... -.|+++ +++.+++ .|+ ++.|||||+|+|+++++ ++.++++.+.+++.
T Consensus 210 ~~Ndle~~~~~-------l~P~l~~~~~~l~~~~ga~~a~mSGSGsTvf~l~~~-~~~a~~~~~~l~~~ 270 (283)
T PRK14610 210 ARNDLLETAIS-------LVPEIEEILFVLESLEGCILSRMSGSGATCFALFEE-EEAAEAAARYLKMT 270 (283)
T ss_pred hcCchHHHHHH-------hChHHHHHHHHHHhcCCCceEEEeCcccceeEEeCC-HHHHHHHHHHhhhh
Confidence 11111111111 147776 7777765 477 89999999999999975 56778888888754
No 41
>PTZ00299 homoserine kinase; Provisional
Probab=99.90 E-value=5.6e-22 Score=178.15 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=140.0
Q ss_pred chHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCC---cccHhHHHH
Q 043436 45 GGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVK---VEIRPNLIL 121 (302)
Q Consensus 45 ~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls---~~el~~la~ 121 (302)
+..|++.+++..+++.+ +... ..|++|+|+++||.++|||||||.+||.+.+++++++++ ++ .+++.++|.
T Consensus 59 ~~~nlv~~a~~~~~~~~---~~~~-~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~--l~~~~~~el~~~A~ 132 (336)
T PTZ00299 59 DEDNMVVQACRLAFEEY---AHKS-MPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLT--METENEEALLQAIA 132 (336)
T ss_pred CcchHHHHHHHHHHHHh---cCCC-CCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCC--CCccCHHHHHHHHH
Confidence 34689988888777644 2211 247999999999999999999999999999999999999 95 688999999
Q ss_pred HHHHHcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEEEeCCC--CChHHHHHHHHHhhhcC
Q 043436 122 NAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLIYAENP--SDSGKVHSTVRQRWLDG 198 (302)
Q Consensus 122 ~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~~~~~~--~~t~~~~~~~~~~~~~~ 198 (302)
.+|. +.+|+++|++||++....... |.....+++.+ .+ .+++++|+.. .+|+...+-+....
T Consensus 133 ~~EG------HpDNVapal~GG~~~~~~~~~-----ge~~~~~i~~~~~~-~~vv~iP~~~~~~sT~~aR~vLP~~v--- 197 (336)
T PTZ00299 133 KFEG------HPDNAAPAIYGGIQLVYKKDN-----GRFLTYRVPTPPNL-SVVLFVPHNKMKANTHVTRNLIPTSV--- 197 (336)
T ss_pred hhcC------CcccHHHHHhCCEEEEEecCC-----CceEEEecCCCCCe-EEEEEECCCCccccHHHHHhhCcccC---
Confidence 8883 687799999999987643211 11112344322 12 6778888864 47864422211111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HH-HHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCce
Q 043436 199 DEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNH-NF-DLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGA 274 (302)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~ 274 (302)
+ ..+....+.. ...+..+|.++|++.+.. |.+ .| ..+. .--.|.++ +.+.+.+.|+ ++.|||||++
T Consensus 198 ~--~~dav~n~~~-~~~lv~al~~~d~~ll~~-~~D~lhep~R~------~~liP~~~~v~~~~~~~Ga~g~~lSGSGPT 267 (336)
T PTZ00299 198 S--LEDAVFNISR-TSILVLALSTGDLRMLKS-CSDKLHEQQRS------DALFPHFRPCVKAAREAGAHYAFLSGAGPS 267 (336)
T ss_pred c--HHHHHHhhhH-HHHHHHHHHhCCHHHHHh-chhcccCcccc------cccCccHHHHHHHHHHCCCeEEEEEchhhh
Confidence 0 1111122222 334778999999998854 422 22 1111 01247787 9999999999 9999999999
Q ss_pred EEEEee
Q 043436 275 VIAFCP 280 (302)
Q Consensus 275 ~~al~~ 280 (302)
+|++++
T Consensus 268 v~al~~ 273 (336)
T PTZ00299 268 VCALVG 273 (336)
T ss_pred heEEec
Confidence 999997
No 42
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.89 E-value=5.3e-21 Score=172.05 Aligned_cols=230 Identities=12% Similarity=0.127 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
..|.+..+++.+++++ |. .|++|+|+++||.++|||||||+++|++.|++++++.+ ++.+|+++++.+.|.
T Consensus 63 ~~n~~~~~~~~~~~~~---g~----~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~--ls~~el~~~a~~ge~ 133 (324)
T TIGR00144 63 RRSRIMEAARKTLKHI---GS----EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMK--FTAREIAHIVGRGGT 133 (324)
T ss_pred HHHHHHHHHHHHHHHh---CC----CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHhCCCC
Confidence 4688888888887754 32 47999999999999999999999999999999999999 999999999975543
Q ss_pred HcCCCCCccceeeeeecCeeEEe---ec-ccccccc--Cc----ccccccCCCCCCCEEEEEeCCCCChHHHHHH--HHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMD---FR-KEHMDEL--GH----GIYKPMDIDLLPPLYLIYAENPSDSGKVHST--VRQ 193 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~---~~-~~~~~~~--g~----~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~--~~~ 193 (302)
+.+|++++.+||++... +. ....... .. ..+.+++++.+ .+++++|+.. .|....+. +..
T Consensus 134 ------s~~~va~~~~GG~vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~-~~vlviP~~~-~t~~are~~~lp~ 205 (324)
T TIGR00144 134 ------SGIGVASFEDGGFIVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFPDW-NIILAIPEID-SVSGRREVNIFQK 205 (324)
T ss_pred ------CccceeeeeeCCEEEECCcccccccccCcccccCCCCCCeEEecCCCCc-EEEEEecCCC-CCCcHHHHHHHHh
Confidence 45689999999998752 11 0000000 00 00112222222 6888888876 55443221 222
Q ss_pred hhhcCcHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHHHHHHHH-HhhcCCCCCCCccHH-HHHHHHHcCCceeecC
Q 043436 194 RWLDGDEFIISSMKEVAQM-AAEGQAAILEKNYSKLAELMNHNFDLR-RRMFGDDVLGALNIE-MVEIARRFGAASKFTG 270 (302)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~-~~~~~~al~~~d~~~~~~~~~~~~~~~-~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsG 270 (302)
... .+. .+ ..++... ..++..+|.++|++.|++.|++.+..- +.+. .....+.+. +++.+.+. .|+.+||
T Consensus 206 ~~~-i~~--~d-v~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~--~~~r~~li~~~~~~l~~a-~g~~iSG 278 (324)
T TIGR00144 206 YCP-VPL--RD-VERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIE--RELQDPLIKRIIDSMISA-PGAGMSS 278 (324)
T ss_pred cCC-CCH--HH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhh--ccccCHHHHHHHHHHHhc-cCceecC
Confidence 111 111 11 2333332 345789999999999999998644211 0010 012234444 55655442 3889999
Q ss_pred CCceEEEEeeCCc-chHHHHHHHHHHcCCc
Q 043436 271 SGGAVIAFCPNGP-SQVELLEDACRKAGFS 299 (302)
Q Consensus 271 aGg~~~al~~~~~-~~~~~~~~~l~~~g~~ 299 (302)
+|++++++++++. +.++.+.+.+.+.|+.
T Consensus 279 sGPTv~al~~~~~~~~~~~~~~~~~~~~~~ 308 (324)
T TIGR00144 279 FGPTVYAVTDEKPGNIAGAVADIFGPYGVY 308 (324)
T ss_pred CCCeEEEEecCchHHHHHHHHHHhhhCCCc
Confidence 9999999997411 1245566666655543
No 43
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=1.7e-21 Score=170.80 Aligned_cols=232 Identities=14% Similarity=0.099 Sum_probs=157.7
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchh--hhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceE
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHH--LMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFT 74 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~ 74 (302)
|++++|..++.|. .+|.+.++.|.+++...+. +.... ........|++.++++.+.+++ |. ..+++
T Consensus 10 NL~L~V~gkR~DGYH~l~sl~~~i~l~D~l~i~~~~~~~i~i~~-~~~~~~~~Nlv~ra~~~l~~~~---g~---~~~v~ 82 (288)
T PRK00650 10 NLFLQLLGKREDGFHEIVTRYQAIAFGDQLSLSISSRDSLQVIN-ACHLETPSNSIWKSVALFRRYT---GI---TTPVS 82 (288)
T ss_pred EeeeccCCcCCCCCcceeEEEEEcCCCCEEEEEECCCCcEEEeC-CCCCCccccHHHHHHHHHHHHh---CC---CCCeE
Confidence 6788888887653 7889999999999875331 21110 0111224799999999888764 33 24799
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccccc
Q 043436 75 LSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHM 154 (302)
Q Consensus 75 i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~ 154 (302)
|+|.++||.++|||||||.++|++.+++++++++ ++.+++.++|.++ |. |++++++||..+..- .
T Consensus 83 I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~--ls~~eL~~lA~~l--------Ga-DvPffl~~g~a~~~G-~--- 147 (288)
T PRK00650 83 WRVVKQIPIGAGLAGGSSNAATALFALNQIFQTG--LSDEELRSLAEKI--------GM-DTPFFFSTGSALGVG-R--- 147 (288)
T ss_pred EEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-cchhhhcCceEEEEe-c---
Confidence 9999999999999999999999999999999999 9999999999988 44 999999989877641 1
Q ss_pred cccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 043436 155 DELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNH 234 (302)
Q Consensus 155 ~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~ 234 (302)
|+ .+.+++...-.+++++.|+...+|+++++..... ... ..... . -..+|++...
T Consensus 148 ---Ge-~l~~~~~~~~~~~vlv~P~~~vsT~~ay~~~~~~---~~~-----------~~~~~-~-~~~Ndle~~~----- 202 (288)
T PRK00650 148 ---GE-KIIALEESVSDRYVLYFSSEGVLTSRAFAYVQPS---DCS-----------SRKNL-E-YTQNDLEKPV----- 202 (288)
T ss_pred ---CC-EEEECcCCCCceEEEEeCCCCCChHHHHHhhccc---ccc-----------hhhHh-c-cCCCchHHHH-----
Confidence 21 3455532110168888899999999988643210 000 00000 0 0123332211
Q ss_pred HHHHHHhhcCCCCCCCccHH-HHHHHHHcCC--c--eeecCCCceEEEEeeCCcchHHHHH-HHH
Q 043436 235 NFDLRRRMFGDDVLGALNIE-MVEIARRFGA--A--SKFTGSGGAVIAFCPNGPSQVELLE-DAC 293 (302)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~--g--aklsGaGg~~~al~~~~~~~~~~~~-~~l 293 (302)
.. -.|++. +.+.+.+.|+ + +.|||+|+|+|+++++ ++.++++. +.+
T Consensus 203 -----~~-------~~p~i~~~~~~l~~~~~~~~~~~~MSGSGst~F~l~~~-~~~~~~~~~~~~ 254 (288)
T PRK00650 203 -----FR-------LRLDLKEKKHWLESLWAELPVHVGLTGSGATLFVRYPE-ILEKDPSYAAQI 254 (288)
T ss_pred -----HH-------hChHHHHHHHHHHhccccCCCeEEEeCcccCEEEEeCC-HHHHHHHHHHHh
Confidence 10 136665 7777777643 3 6799999999999986 55555555 444
No 44
>PRK05905 hypothetical protein; Provisional
Probab=99.86 E-value=1.6e-20 Score=162.44 Aligned_cols=228 Identities=13% Similarity=0.095 Sum_probs=150.1
Q ss_pred CceEEEEEeeCC-c-----eeEecc-CCCCcceeccchh----hhhhhccCCccchHHHHH-HHHHHHHHHhHhcCCCCC
Q 043436 2 NFWASVKLEPSD-D-----LVIKPH-PVHDLVQFQSLHH----LMNRLQNEGYYGGVRLVM-AICKVFFKYCKDNKIDLH 69 (302)
Q Consensus 2 d~~~~v~~~~~~-~-----~~~~s~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~g~~~~ 69 (302)
|++++|+.++.| . .++.+. ++.|.++++..+. +.............|++. +|+..+.+.+ +.
T Consensus 10 NL~L~I~gkR~DdGYHel~sv~~~i~~l~D~l~i~~~~~~~~~i~~~~~~~~~~~~~nli~~ka~~~l~~~~---~~--- 83 (258)
T PRK05905 10 NLGLSIYKKCKKVTKHKLESIFILVENVYDDIEIEKIEKNIDDIHYFDETNEILVYSRLILVKTLEWLRDKY---NI--- 83 (258)
T ss_pred EeeeeecccCCCCCCcceeEEEEEccccccEEEEEECCCCCceEEEeCCCcCCCCCcchHHHHHHHHHHHHh---CC---
Confidence 788889888764 3 788899 9999999875332 111101011111268888 9998887754 33
Q ss_pred CCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeec-CeeEEe
Q 043436 70 KGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYG-GLVHMD 148 (302)
Q Consensus 70 ~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~G-g~~~~~ 148 (302)
..+++|++.++||.++|||||||+++|++.+++++|+ ++.+++.+++..+ |. |+++|++| |..+..
T Consensus 84 ~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~----ls~~~L~~ia~~l--------GA-DVPFfl~g~~~a~~~ 150 (258)
T PRK05905 84 KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG----INEINYKDVVNKL--------GS-DIPFFLSGYKTAYIS 150 (258)
T ss_pred CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC----CCHHHHHHHHHHh--------CC-CcceEEeCCccEEEE
Confidence 2579999999999999999999999999999999996 6788999999887 76 99999999 888765
Q ss_pred eccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHH---HccCH
Q 043436 149 FRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAI---LEKNY 225 (302)
Q Consensus 149 ~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al---~~~d~ 225 (302)
+. |+ .+.|++...-.+++|+.|+.+.+|++++++........+.... .......... ..+|+
T Consensus 151 -G~------GE-~l~pl~~~~~~~~vlv~P~~~vST~~vY~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~NdL 215 (258)
T PRK05905 151 -DY------GS-QVEDLIGQFKLTYKVIFMNVNVSTKKVFEKFDDNQHVIKNNFK-------TIIKNLKENIVVNIHNDL 215 (258)
T ss_pred -ee------Cc-eeEECCCCCCceEEEECCCCCCCHHHHHHhhccccCCcccchH-------HHHHHHHHhhhccccccc
Confidence 11 22 3666643211158888899999999999765321100000000 0010010100 01222
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCCceEEEEee
Q 043436 226 SKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSGGAVIAFCP 280 (302)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaGg~~~al~~ 280 (302)
+.. -.. -.|++. +.+.+++.|+.+.|||+|+|+|++-.
T Consensus 216 e~~----------a~~-------~~P~i~~~~~~l~~~g~~a~MSGSGstvF~l~~ 254 (258)
T PRK05905 216 QEP----------CFE-------LYPNLLYKYNELLNDGFYTILSGAGSSFIVIKK 254 (258)
T ss_pred HHH----------HHH-------hChHHHHHHHHHHhCCCCEEEeCcchhheEEee
Confidence 211 111 136676 77777777777899999999998754
No 45
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=3.8e-19 Score=150.02 Aligned_cols=212 Identities=25% Similarity=0.289 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
+-+++..++..+.+++ |+ +.++++.++|+||.++||.||||...|++.|+.++.+.+ +++.++.+++.++-.
T Consensus 50 d~~li~~~~~~v~e~~---g~---~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~--~~~~~i~~l~a~~S~ 121 (278)
T COG1685 50 DTRLIERCVERVREKY---GI---PLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEE--IDDFEILRLGARASK 121 (278)
T ss_pred ChHHHHHHHHHHHHHc---CC---CcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHH
Confidence 4588888888888765 44 357999999999999999999999999999999999999 999999999999887
Q ss_pred H--cCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 126 E--LGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 126 ~--~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
. +...|-.+|.++++|||++..++.... .+...+.+.+ ..+|..|+.+..++++ +++
T Consensus 122 ~aGvSvTGA~DDa~AS~~GG~~iTDN~~m~-------Ilrr~~~~~~-~vlI~~p~~k~~~~~v--dv~----------- 180 (278)
T COG1685 122 EAGVSVTGAFDDACASYLGGIVITDNRKMR-------ILRRLDLPEL-TVLILAPGEKRLSANV--DVN----------- 180 (278)
T ss_pred hcCceEeccchHHHHHHhCCeEEecchhhe-------ehhccccCCc-eEEEEecCCccccccC--CHH-----------
Confidence 4 446788999999999999987743311 1222222222 5667777766544432 111
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHcCC-ceeecCCCceEEEEeeCC
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIEMVEIARRFGA-ASKFTGSGGAVIAFCPNG 282 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~a~~~g~-gaklsGaGg~~~al~~~~ 282 (302)
.+..+...++.+.+.-.+|+|. +.|..|..+-... +. -++++...+.+.|+ ++.+||.||.+++++++
T Consensus 181 -~~r~~a~~~e~A~~lA~~G~~~---~Am~lNG~~y~~a-----LG-~~~e~~~~ale~GA~~aglSGtGPa~~Al~~~- 249 (278)
T COG1685 181 -RLRLIAPVVEEAFRLALKGEYF---KAMVLNGILYCSA-----LG-YDLEPALKALEAGAAAAGLSGTGPAYFALTED- 249 (278)
T ss_pred -HHHHhhHHHHHHHHHHhcccHH---HHHHHhHHHHHHH-----hC-CChHHHHHHHhcccceeccCCCCCceEEEecC-
Confidence 1122234445455555578875 4666665333221 22 12346778888999 99999999999999985
Q ss_pred cchHHHHHHHHHHcCCcc
Q 043436 283 PSQVELLEDACRKAGFSI 300 (302)
Q Consensus 283 ~~~~~~~~~~l~~~g~~~ 300 (302)
+ +.+.+.|++.|..+
T Consensus 250 ~---~~v~ea~~~~G~V~ 264 (278)
T COG1685 250 P---EEVAEAWSKIGDVI 264 (278)
T ss_pred c---HHHHHHHHhCCeEE
Confidence 3 78999999987654
No 46
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.82 E-value=1.6e-17 Score=147.84 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHH
Q 043436 47 VRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKE 126 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~ 126 (302)
.+.+..++..+.+.+ +. ..+++|.+++++|.++|||||||.++|++.|++++++++ ++.+++.+++++.|
T Consensus 66 ~~~v~~~l~~~~~~~---~~---~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~--l~~~eL~~lA~~gs-- 135 (305)
T TIGR01240 66 NEKTSNCLDDFRQLR---KE---QEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLP--LDTSELSRIARKGS-- 135 (305)
T ss_pred hHHHHHHHHHHHHhc---CC---CCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhc--
Confidence 456666666655532 32 357999999999999999999999999999999999999 99999999998763
Q ss_pred cCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCC---CEEEEEeCCCC---ChHHHHHHHHHhhhcCc
Q 043436 127 LGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLP---PLYLIYAENPS---DSGKVHSTVRQRWLDGD 199 (302)
Q Consensus 127 ~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~---~~~l~~~~~~~---~t~~~~~~~~~~~~~~~ 199 (302)
| ..+.|++||++.+..+.+.. .....+++.+ .+| .+++++++.+. +|..+...+. ..
T Consensus 136 -----G--sa~~s~~GG~v~~~~g~~~~----~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~~~----ts- 199 (305)
T TIGR01240 136 -----G--SACRSLFGGYVAWEKGKDDH----SSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLTVA----TS- 199 (305)
T ss_pred -----C--CeeeeeecCeEEEEcCCCCC----CeeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHhhh----cC-
Confidence 2 36679999999876321110 0012333322 121 34555665543 4554433222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh-c-CCCCCC--Ccc-HH---HHHHHHHcCC-ceeecC
Q 043436 200 EFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM-F-GDDVLG--ALN-IE---MVEIARRFGA-ASKFTG 270 (302)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l-~-~~~~~~--~~~-l~---l~~~a~~~g~-gaklsG 270 (302)
..+..+.++..+....++.||.++|++.|+++...+...+..+ - ..+.+. +++ ++ +++..++.|. .+....
T Consensus 200 ~~~~~~v~~~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~D 279 (305)
T TIGR01240 200 ELFKEWIEHVVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMD 279 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 2344555666656888999999999999999887664222222 1 101111 111 12 5556666677 678889
Q ss_pred CCceEEEEeeCCcchHHHHHHHHHH
Q 043436 271 SGGAVIAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 271 aGg~~~al~~~~~~~~~~~~~~l~~ 295 (302)
||+.+..++. +++.+++.+.+++
T Consensus 280 AGpNv~vl~~--~~~~~~v~~~~~~ 302 (305)
T TIGR01240 280 AGPNVKVLYL--AENLSKLFEFIYK 302 (305)
T ss_pred CCCCEEEEEc--cccHHHHHHHHHH
Confidence 9998888887 5678888888765
No 47
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.81 E-value=7.2e-19 Score=152.80 Aligned_cols=168 Identities=13% Similarity=0.109 Sum_probs=123.8
Q ss_pred CceEEEEEeeCCc-----eeEecc-CCCCcceeccch--hhhhhhccCCccchHHHHHHHHHHHHHH-hHhcCCCCCCCc
Q 043436 2 NFWASVKLEPSDD-----LVIKPH-PVHDLVQFQSLH--HLMNRLQNEGYYGGVRLVMAICKVFFKY-CKDNKIDLHKGN 72 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~g~~~~~~g 72 (302)
|++++|.-++ +. .++.+. ++.|.+++...+ .+.... ..+.....|++.+|+..+.++ +.. .......|
T Consensus 10 NL~L~v~~kr-dGyH~l~s~~~~i~~l~D~l~i~~~~~~~~~i~~-~~~~p~~~NLv~kA~~~l~~~~~~~-~~~~~~~g 86 (257)
T PRK04181 10 NIFLKILGKR-GNYHELISRFVLVKDLFDEIEFVPKSAESFELIG-NFDCPLEENIIYKAYQELKNKGFSN-ELIEFFKK 86 (257)
T ss_pred EEEEeeCcCC-CCCceeheeeeEccCcCcEEEEEECCCCCEEEEc-CCCCCCCCcHHHHHHHHHHHhcccc-ccccCCCc
Confidence 7788888887 63 788888 899998887422 122111 111112469999999888763 210 01100147
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeec-CeeEEeecc
Q 043436 73 FTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYG-GLVHMDFRK 151 (302)
Q Consensus 73 ~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~G-g~~~~~~~~ 151 (302)
++|+|+++||.++|||||||.++|++.+++++++++ ++.+++.++|..+ |. |+++|++| |..+.. +.
T Consensus 87 v~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~--ls~~eL~~lA~~l--------Ga-DvPffl~~~~~a~~~-G~ 154 (257)
T PRK04181 87 KAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLK--LSLEELAEIGSKV--------GA-DVAFFISGYKSANVS-GI 154 (257)
T ss_pred eEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHh--------CC-CccEEecCCceEEEE-ee
Confidence 999999999999999999999999999999999999 9999999999988 76 99999999 777765 11
Q ss_pred ccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHH
Q 043436 152 EHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVR 192 (302)
Q Consensus 152 ~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~ 192 (302)
|+ .+.|++.. .++++|+.|+.+.+|.+++++..
T Consensus 155 ------Ge-~l~~l~~~-~~~~~lv~P~~~vsT~~vy~~~~ 187 (257)
T PRK04181 155 ------GE-IVEEFEEE-ILNLEIFTPNIFCSTKAVYKAYR 187 (257)
T ss_pred ------CC-eeEECCCC-CCeEEEECCCCCcCHHHHHHHHh
Confidence 22 46666421 22688888999999999997653
No 48
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.5e-18 Score=157.17 Aligned_cols=241 Identities=18% Similarity=0.270 Sum_probs=156.9
Q ss_pred ccchHHHHHHHHHHHHHHhHhcCCCCC-CCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHh-CCCCCCCcccHhHHH
Q 043436 43 YYGGVRLVMAICKVFFKYCKDNKIDLH-KGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFY-KVRHLVKVEIRPNLI 120 (302)
Q Consensus 43 ~~~~~~~v~~~~~~~~~~~~~~g~~~~-~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~-~~~~~ls~~el~~la 120 (302)
...|.+|+++.+..+.++.+.++.... +.|+.+...+++|.|+||+||||.+++.+.|..++. |.+...+++++..+.
T Consensus 112 ~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~ 191 (489)
T KOG0631|consen 112 VSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATIT 191 (489)
T ss_pred ccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcce
Confidence 457899999999999888844433321 249999999999999999999999999998988877 666447788999999
Q ss_pred HHHHHHcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCC--C---CEEEEEeCC---CC----------
Q 043436 121 LNAEKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLL--P---PLYLIYAEN---PS---------- 182 (302)
Q Consensus 121 ~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~--~---~~~l~~~~~---~~---------- 182 (302)
..+|.++|..+|.|||+++++|.-....+... ...|+..+.+ + .+++..+-. ..
T Consensus 192 ~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~~--------~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlR 263 (489)
T KOG0631|consen 192 VVAESYIGLNSGGMDQAASVLAEKGHALLVDP--------YFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLR 263 (489)
T ss_pred EEeecccCcCCCcHHHHHHHHHhcCceEEecc--------cCCccccccccCCCCceEEEechhhhhcchhhhhhhhhce
Confidence 99999999999999999999887544332110 0112221111 1 233322211 00
Q ss_pred -----------------ChH------------------------HHHHHHHHhhhcC---------------cHHH----
Q 043436 183 -----------------DSG------------------------KVHSTVRQRWLDG---------------DEFI---- 202 (302)
Q Consensus 183 -----------------~t~------------------------~~~~~~~~~~~~~---------------~~~~---- 202 (302)
.+. +++..+.+..... +++.
T Consensus 264 v~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~ 343 (489)
T KOG0631|consen 264 VVEGTIAAGELAAKILVELPAYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLL 343 (489)
T ss_pred eEeeehhhHHHHHHhhcccHHHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhc
Confidence 011 0000000000000 0000
Q ss_pred -------------HHHHHHHHH--HHHHHHHHHHc------cCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHH
Q 043436 203 -------------ISSMKEVAQ--MAAEGQAAILE------KNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIAR 260 (302)
Q Consensus 203 -------------~~~~~~i~~--~~~~~~~al~~------~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~ 260 (302)
.+..|...+ .+.++...+.+ |.+..||++|+++|.+.+.+| +.++|++| |+++++
T Consensus 344 T~~~v~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~y---Ecscpel~qL~kial 420 (489)
T KOG0631|consen 344 TLAAVDLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLY---ECSCPELDQLCKIAL 420 (489)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHH---hcCCHhHHHHHHHHH
Confidence 001111111 12233333332 347789999999999999887 79999999 999999
Q ss_pred HcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHHHHHc
Q 043436 261 RFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 261 ~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
+.|. |+|++||| ||.+++++ .+..+.+...+.+.
T Consensus 421 a~g~~gaRlTGaGwGGc~v~lvp--~d~~~~~~~~~~~~ 457 (489)
T KOG0631|consen 421 ANGGVGARLTGAGWGGCTVALVP--ADLVDFAVAALKEI 457 (489)
T ss_pred hcCCccceeeccccccceeeecc--ccchHHHHHhhhhh
Confidence 9988 99999999 59999998 45666777666543
No 49
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.69 E-value=1e-14 Score=124.55 Aligned_cols=213 Identities=16% Similarity=0.238 Sum_probs=146.7
Q ss_pred CceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEe--
Q 043436 71 GNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMD-- 148 (302)
Q Consensus 71 ~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~-- 148 (302)
.|++|+|.+++|...||||.+.++.|+..+++++++++ +|-.||+... ..|..+|++ ++++-+||++. |
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~--~~~~elA~~v-----gRG~tSgiG-v~afe~GGFIV-DGG 140 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLE--LSIRELAFAV-----GRGGTSGIG-VYAFEYGGFIV-DGG 140 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCC--CCHHHHHHHH-----ccCCcccee-EEEEEECCEEE-ECC
Confidence 57999999999999999999999999999999999999 8877777665 467888996 99999999986 4
Q ss_pred eccccccccCcccccccCC-CCCC---CEEEEEeCCCC-ChHHHHHHHHHhhhcCcHHHHHHHHHHH-HHHHHHHHHHHc
Q 043436 149 FRKEHMDELGHGIYKPMDI-DLLP---PLYLIYAENPS-DSGKVHSTVRQRWLDGDEFIISSMKEVA-QMAAEGQAAILE 222 (302)
Q Consensus 149 ~~~~~~~~~g~~~~~~l~~-~~~~---~~~l~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~al~~ 222 (302)
+...... . ..+|+-. ..+| .|+|++|..++ ...+.-.++.......|.. ...++. -...++..|+.+
T Consensus 141 h~~~f~p---s-~~sP~I~R~dfPedW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~---~~~~ls~~vLm~mmPavvE 213 (312)
T COG1907 141 HSFGFLP---S-SASPLIFRLDFPEDWRFVLAIPEVERGVSGRREVDIFKKYCPVPLE---EVGELSHRVLMKMMPAVVE 213 (312)
T ss_pred cccCccc---C-CCCceeeeecCCCceEEEEEecCCCccccchHHHHHHHhcCCCCHH---HHHHHHHHHHHHHhHHHHh
Confidence 1111000 0 1122211 1234 68888898653 2222222232222222221 112222 345788899999
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCCC--CCCCccHH-HHHHHHHcCCceeecCCCceEEEEeeCCcc--hHHHHHHHHHHcC
Q 043436 223 KNYSKLAELMNHNFDLRRRMFGDD--VLGALNIE-MVEIARRFGAASKFTGSGGAVIAFCPNGPS--QVELLEDACRKAG 297 (302)
Q Consensus 223 ~d~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~-l~~~a~~~g~gaklsGaGg~~~al~~~~~~--~~~~~~~~l~~~g 297 (302)
+|++.|++.|++.|.+.-.+++.. .+.++.++ +++.+.+...++-+|-=|+++++++++... .+.++.+.+.+.|
T Consensus 214 ~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~a~~agqSSwGPtvY~i~d~~~~~~~~~~~~~~~~~~g 293 (312)
T COG1907 214 RDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEAAYGAGQSSWGPTVYGIVDSREAGSVVRKLIDILLEEG 293 (312)
T ss_pred hCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHhcccccccccCCEEEEeccccccchHHHHHHHHHHhcC
Confidence 999999999999887764443222 23345555 899998873388889889999999986322 4688888888877
Q ss_pred Cc
Q 043436 298 FS 299 (302)
Q Consensus 298 ~~ 299 (302)
+.
T Consensus 294 ~~ 295 (312)
T COG1907 294 IG 295 (312)
T ss_pred Cc
Confidence 54
No 50
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.63 E-value=3.1e-16 Score=108.40 Aligned_cols=67 Identities=31% Similarity=0.522 Sum_probs=61.7
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecC
Q 043436 74 TLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGG 143 (302)
Q Consensus 74 ~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg 143 (302)
+|+|+++||.++|||||||+++|++.+++++++++ ++++++.++++.+|+..|.++|. |+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~--~~~~~l~~~a~~~e~~~g~~~g~-d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLP--LSKEELAKLAQEAERYIGKPSGI-DDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTS--SBHHHHHHHHHHHHHHCSSSHSH-HHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHcccc--ccHHHHHHHHHHHHHHcCCCChh-hHHHHHhCc
Confidence 58899999999999999999999999999999999 99999999999999944878776 569999997
No 51
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.61 E-value=1.4e-13 Score=122.45 Aligned_cols=201 Identities=16% Similarity=0.183 Sum_probs=124.4
Q ss_pred EEEEEe--CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCC-cccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeec
Q 043436 74 TLSYDT--NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVK-VEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFR 150 (302)
Q Consensus 74 ~i~i~s--~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls-~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~ 150 (302)
++.|.| ++|.++|||||||..+|++.|++.+++++ ++ ..++..+|+. | +|. | +.++|||++.|.-+
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~--~~~~~~ls~lAr~-----G--SGS-a-~rS~~Gg~v~w~~G 173 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVK--EDFPGELSAIARQ-----G--SGS-A-CRSLYGGFVKWNMG 173 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCC--CCchHHHHHHHhc-----c--ChH-H-HHHhhCCeEEecCC
Confidence 566666 99999999999999999999999999999 99 8999999973 3 444 3 45999999998633
Q ss_pred cccccccCcc-cccccCCC-CCC--C-EEEEEeCCC--C-ChHHHHHHHHHhhhcCcHHHHHHHHH-HHHHHHHHHHHHH
Q 043436 151 KEHMDELGHG-IYKPMDID-LLP--P-LYLIYAENP--S-DSGKVHSTVRQRWLDGDEFIISSMKE-VAQMAAEGQAAIL 221 (302)
Q Consensus 151 ~~~~~~~g~~-~~~~l~~~-~~~--~-~~l~~~~~~--~-~t~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~al~ 221 (302)
.. . .+.. .-.++..+ ..| + +++++...+ . +|..+...+ . ..+.+..+..+ ..+...++.+||+
T Consensus 174 ~~-~--d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv----~-TSp~~~~w~~~~~~~~~~~~~~Ai~ 245 (343)
T PLN02407 174 KK-E--DGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESV----E-TSPLLQHRAKEVVPKRILQMEEAIK 245 (343)
T ss_pred CC-C--CCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhh----h-cChhHHHHHHhhhHHHHHHHHHHHH
Confidence 10 0 0111 11333221 122 2 334444332 2 333222211 1 22345556665 5678889999999
Q ss_pred ccCHHHHHHHHHHHHHHHHhh--cCCCCCC--Ccc-H---HHHHHHHHc-CC--ceeecCCCceEEEEeeCCcchHHH-H
Q 043436 222 EKNYSKLAELMNHNFDLRRRM--FGDDVLG--ALN-I---EMVEIARRF-GA--ASKFTGSGGAVIAFCPNGPSQVEL-L 289 (302)
Q Consensus 222 ~~d~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~-l---~l~~~a~~~-g~--gaklsGaGg~~~al~~~~~~~~~~-~ 289 (302)
++|++.||++...+...+..+ .+.+.+. ++. + ++++..++. |. .+....||+.+..++. +++.++ +
T Consensus 246 ~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~vl~~--~~~~~~~v 323 (343)
T PLN02407 246 NRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIAL--NRKVAAQL 323 (343)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCCCEEEEEC--hhhhHHHH
Confidence 999999999887654222221 1111111 111 1 255666553 53 5677799998777887 455554 7
Q ss_pred HHHHHH
Q 043436 290 EDACRK 295 (302)
Q Consensus 290 ~~~l~~ 295 (302)
.+++.+
T Consensus 324 ~~~~~~ 329 (343)
T PLN02407 324 LQRLLY 329 (343)
T ss_pred HHHHHH
Confidence 765544
No 52
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=99.60 E-value=6.3e-13 Score=117.26 Aligned_cols=228 Identities=16% Similarity=0.164 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHH
Q 043436 47 VRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKE 126 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~ 126 (302)
...++.++..+.+. .|. ...+.|...++.|.++|||||||..+|+.+|++++++++ ++..++.++|+.+
T Consensus 71 ~~k~~~~ld~~R~~---~~~---~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~--~d~~~lS~~AR~g--- 139 (329)
T COG3407 71 NEKARRVLDRFRKE---YGI---SFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLD--LDDEFLSRIARLG--- 139 (329)
T ss_pred HHHHHHHHHHHHHh---hcc---cceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccC--CCHHHHHHHHHHh---
Confidence 35666666555542 233 356888889999999999999999999999999999999 9999999999864
Q ss_pred cCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEEEeCC--CCChHHHHHHHHHhhhcCcHHHH
Q 043436 127 LGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLIYAEN--PSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 127 ~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~~~~~--~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
.+-...+++||++.|+-.. +.... .....++... ++..++++..+. +.++.+..+... ....++.
T Consensus 140 ------SGSa~RS~~Gg~~~W~~~~-g~~~~-~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~----~tS~~y~ 207 (329)
T COG3407 140 ------SGSASRSIFGGFVLWEKGE-GEDSA-AEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTA----ETSPFYD 207 (329)
T ss_pred ------ccchhhhhcCCeeEeccCC-CCccc-eeeeccccCccccceEEEEEccccCCCCchHHHHHHH----HcChHHH
Confidence 2235679999998876322 11000 0012222221 122344444433 234444333211 1224556
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHhhcC-CCC---CCCccHHHHHHHH---HcCC-ceeecCCCce
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHNF-DLRRRMFG-DDV---LGALNIEMVEIAR---RFGA-ASKFTGSGGA 274 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~-~~~~~l~~-~~~---~~~~~l~l~~~a~---~~g~-gaklsGaGg~ 274 (302)
+++..+.....+++.+++.+|++.|+++..++. .+..-+.+ .+. +....+++++..+ +.|- .+....|||.
T Consensus 208 ~w~~~~~~~~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaGPn 287 (329)
T COG3407 208 AWLEHSEEDLEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAGPN 287 (329)
T ss_pred HHHHHHHHhHHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCceEEEEcCCCc
Confidence 666666676788999999999999999887653 22222210 000 1112223544444 4344 5677899999
Q ss_pred EEEEeeCCcchHHHHHHHHHHcCCc
Q 043436 275 VIAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 275 ~~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
|..+|. +++..++.+.+...+..
T Consensus 288 V~v~~~--~~~l~~~~~~~~~~~~~ 310 (329)
T COG3407 288 VKVITL--EENLIDLLEILKTLECI 310 (329)
T ss_pred eEEEEe--cccHHHHHHHHhhcccc
Confidence 999997 57788888887766543
No 53
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.3e-13 Score=125.43 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=151.9
Q ss_pred CceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcc----cHhHHHHHHHHHcCCCCCccceeeeeecCeeE
Q 043436 71 GNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVE----IRPNLILNAEKELGIVAGLQDRVAQVYGGLVH 146 (302)
Q Consensus 71 ~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~----el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~ 146 (302)
.||+|+..|++|.|+|||.||-++...++|+....+.- ...+ .+.+-..++|..+.+.+|.+||+..+|.|+-.
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~--~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~ 767 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRA--DGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKK 767 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccc--cchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhh
Confidence 68999999999999999999999999999999887754 3333 34455566898888899999999999998765
Q ss_pred Ee--eccccccccCcccccccCCC-----CCC-CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHH
Q 043436 147 MD--FRKEHMDELGHGIYKPMDID-----LLP-PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQA 218 (302)
Q Consensus 147 ~~--~~~~~~~~~g~~~~~~l~~~-----~~~-~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (302)
-+ ..... |. +.+++.++ .+. ++++|+||+.+-.++.+++|...+-..-....+..+.+.+.++++.+
T Consensus 768 gr~rael~~----~i-e~eeiTipe~f~ekL~dhLLLVYTGKTRLAkNLLQdViRn~far~~a~~Q~ah~l~~~tdecAe 842 (948)
T KOG4644|consen 768 GRCRAELNH----GI-EHEEITIPEEFREKLEDHLLLVYTGKTRLAKNLLQDVIRNFFARCKATKQKAHKLAEATDECAE 842 (948)
T ss_pred ccchhhccC----Cc-eeeeecCCHHHHHHHhhcEEEEEeCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 22 11100 11 23444332 122 89999999988888887776554432223445677888899999999
Q ss_pred HHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHH--cCCceeecCCCc--eEEEEeeCCcchHHHHHHHH
Q 043436 219 AILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARR--FGAASKFTGSGG--AVIAFCPNGPSQVELLEDAC 293 (302)
Q Consensus 219 al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~--~g~gaklsGaGg--~~~al~~~~~~~~~~~~~~l 293 (302)
.+++|.++.+++++...|...+-|. +....+.+. +.+.... .|-.+-..|||| .++.+.++ +.+.+.+...|
T Consensus 843 gf~kGsl~LlgecL~~YweqKk~Ma--pgCEPl~Vr~lldmLaph~hgesgw~AGAGGGGFiYLl~kE-pqqkeaiEa~L 919 (948)
T KOG4644|consen 843 GFEKGSLELLGECLEHYWEQKKFMA--PGCEPLNVRELLDMLAPHKHGESGWAAGAGGGGFIYLLIKE-PQQKEAIEAFL 919 (948)
T ss_pred HHhcCcHHHHHHHHHHHHHhhhccC--CCCCCCcHHHHHHHhccccccccchhccCCCCcEEEEEecC-CCCHHHHHHhh
Confidence 9999999999999999998777664 333334444 6655533 233334667773 67777764 66666666666
Q ss_pred HHc
Q 043436 294 RKA 296 (302)
Q Consensus 294 ~~~ 296 (302)
.+.
T Consensus 920 ak~ 922 (948)
T KOG4644|consen 920 AKN 922 (948)
T ss_pred ccC
Confidence 544
No 54
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=2.1e-13 Score=114.10 Aligned_cols=172 Identities=15% Similarity=0.183 Sum_probs=124.0
Q ss_pred CCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEee
Q 043436 70 KGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDF 149 (302)
Q Consensus 70 ~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~ 149 (302)
..|..+.+.|+||.|.||+||+|+.||+++|+++++|.+ ++..+|+++|..+|. .|. .+|-+.+.++.
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~--l~es~iakLcv~iEP--------tDs--iiF~~~tlFd~ 148 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRE--LRESEIAKLCVSIEP--------TDS--IIFDKATLFDQ 148 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHhhcCC--------ccc--eecccceeehh
Confidence 357999999999999999999999999999999999999 999999999999986 243 56777877664
Q ss_pred ccccccccCcccccccCCCCCCCEE--EEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHH
Q 043436 150 RKEHMDELGHGIYKPMDIDLLPPLY--LIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSK 227 (302)
Q Consensus 150 ~~~~~~~~g~~~~~~l~~~~~~~~~--l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~ 227 (302)
... .+..+ .+++|++. ++-.+....|.+... ....+.......++.+....+.+|+..+|...
T Consensus 149 r~g--------~~~~~-~g~~PpL~ilv~e~~~~v~T~~y~q------~~r~e~~~~~~~e~~~l~~~v~~A~~~~~~~~ 213 (293)
T COG4542 149 REG--------RVIEF-LGEMPPLHILVFEGKGTVETVDYNQ------PPRGEKLLAPLAELGNLINLVEKALKVGDPKL 213 (293)
T ss_pred ccc--------hHHHh-cCCCCceEEEEEcCCCceeeeeccC------CchhhhhhhhHHHHHHHHHHHHHHHccCCHHH
Confidence 331 12221 23455444 443444344443211 00001112334455567777788999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc
Q 043436 228 LAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG 273 (302)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg 273 (302)
+|++-+.|....+. .++.|.++ +.+.+++.++ |.-++++|.
T Consensus 214 lG~AAT~SAv~~Q~-----~LPK~~~~~lL~l~e~~~~~Gv~VAHSGt 256 (293)
T COG4542 214 LGEAATLSAVKNQD-----RLPKPGLNELLRLVEETCAIGVIVAHSGT 256 (293)
T ss_pred HHHHHHHHHHhhcc-----ccCchhHHHHHHHHHHhcccceEEeccCc
Confidence 99999988655553 47888888 9999999887 999999975
No 55
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=99.48 E-value=2e-11 Score=105.29 Aligned_cols=197 Identities=19% Similarity=0.285 Sum_probs=118.6
Q ss_pred ceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeecc
Q 043436 72 NFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRK 151 (302)
Q Consensus 72 g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~ 151 (302)
.++|...+++|..+||.||+|--+|++.||+++|+++ .+++|+..+|+. |.+-.+.++|||++.|+-+.
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~--~~~~els~iAR~---------GSGSACRSl~GG~V~W~mG~ 173 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLD--DSPEELSRIARQ---------GSGSACRSLYGGFVAWEMGE 173 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCC--CCHHHHHHHHhc---------cCchhhhhhhcceeEeeccc
Confidence 3555556699999999999999999999999999999 999999999975 44457889999999986211
Q ss_pred ccccccCcc--cccccCCCCCC---CEEEEEeCCC---CChHHHHHHHHHhhhcCcHHHHHHHHH-HHHHHHHHHHHHHc
Q 043436 152 EHMDELGHG--IYKPMDIDLLP---PLYLIYAENP---SDSGKVHSTVRQRWLDGDEFIISSMKE-VAQMAAEGQAAILE 222 (302)
Q Consensus 152 ~~~~~~g~~--~~~~l~~~~~~---~~~l~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~al~~ 222 (302)
+. .|.. .+...+...+| .+++|.++.. .+|.-+...+.. ...+...+++ +.....+|.+|+.+
T Consensus 174 --~~-DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveT-----S~L~qhRi~~vVP~Ri~~m~eaI~~ 245 (395)
T KOG2833|consen 174 --LD-DGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVET-----SQLLQHRIESVVPQRIQQMREAIRE 245 (395)
T ss_pred --cc-CCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHH-----hHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 00 0211 11222222233 2344555443 345444333221 1122222222 44667889999999
Q ss_pred cCHHHHHHHH-HHHHHHHHhhcCCCCCCCccH--------HHHHHHHHc----CC--ceeecCCCc--eEEEEeeCCcch
Q 043436 223 KNYSKLAELM-NHNFDLRRRMFGDDVLGALNI--------EMVEIARRF----GA--ASKFTGSGG--AVIAFCPNGPSQ 285 (302)
Q Consensus 223 ~d~~~~~~~~-~~~~~~~~~l~~~~~~~~~~l--------~l~~~a~~~----g~--gaklsGaGg--~~~al~~~~~~~ 285 (302)
.|++.|+++. .++.++..-+- -+.|.+ .++....+. |- .|..-.||+ |+|++- +.
T Consensus 246 rDF~~FA~lTm~DSNqFHAvcl----DT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~----e~ 317 (395)
T KOG2833|consen 246 RDFESFAKLTMKDSNQFHAVCL----DTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLE----EN 317 (395)
T ss_pred cCHHHHHHHHHhcchhhhhhhh----ccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhh----hh
Confidence 9999999864 34433332211 012222 166666554 33 467779997 444433 23
Q ss_pred HHHHHHHHHH
Q 043436 286 VELLEDACRK 295 (302)
Q Consensus 286 ~~~~~~~l~~ 295 (302)
..++.+.+.+
T Consensus 318 ~~~~l~~~~~ 327 (395)
T KOG2833|consen 318 VSQLLAAVLK 327 (395)
T ss_pred HHHHHHHHHH
Confidence 4445554433
No 56
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=99.45 E-value=7e-12 Score=106.23 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=124.8
Q ss_pred CCCCCchHHHHHHHHH-HHHHHH-hCCCCCCCc-ccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccC
Q 043436 83 RQTGLSGSSAIVCAAL-DCLLDF-YKVRHLVKV-EIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELG 158 (302)
Q Consensus 83 ~~~GLgSSsA~~va~~-~al~~~-~~~~~~ls~-~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g 158 (302)
.+.||||||++++++. .+++.+ .+-+ ++. .++.++|+.+.. .+|+.|+.-|+++++||++++-+|.+..+.+-
T Consensus 106 ~KtGlGSSAa~~tsLt~~lfls~~~~~n--vd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiyrRF~p~li~~l- 182 (337)
T COG3890 106 TKTGLGSSAAVATSLTCGLFLSHANATN--VDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIYRRFEPGLIPKL- 182 (337)
T ss_pred ccCCCcchhHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEEeecCcchhhhh-
Confidence 4899999999999988 444444 3444 655 789999999998 78877777799999999999866765321100
Q ss_pred cccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcC-cHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 043436 159 HGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDG-DEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFD 237 (302)
Q Consensus 159 ~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~ 237 (302)
..+..+++..+ .+++.......+|..++.++.+.++.. |++.. -..+++.++..+++. .+++.......-..
T Consensus 183 -~qig~~nfg~y-~LmmGd~a~gSeTvglV~kv~~w~ns~~peelk-c~de~nsrvl~l~~~----sLdE~~s~~~~irr 255 (337)
T COG3890 183 -RQIGAVNFGDY-YLMMGDQAIGSETVGLVCKVNKWRNSILPEELK-CNDEMNSRVLNLIKL----SLDESNSKSKAIRR 255 (337)
T ss_pred -HhhCcccccCe-eeeecccccCccchHHHHHHHHHhhcCChHHHH-hHHHHHHHHHHHHhh----hHHHHHHHHHHHHH
Confidence 01222222222 567777777788888898888877654 44333 334444444443332 33332222222222
Q ss_pred HHHhhcCC--CCCCCccHH--HHHHHHHcCC-ceeecCCCc--eEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 238 LRRRMFGD--DVLGALNIE--MVEIARRFGA-ASKFTGSGG--AVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 238 ~~~~l~~~--~~~~~~~l~--l~~~a~~~g~-gaklsGaGg--~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
+++....- ..+..+... |.......|+ ++-+.|||| .++++..+ -.+++++|+..|+..
T Consensus 256 slrritee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~----~~e~re~w~~~gi~i 321 (337)
T COG3890 256 SLRRITEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGGGDAIFLLYRP----NIEAREAWLSKGISI 321 (337)
T ss_pred HHHHHHHHhccccccchhhhhhhhHHhccCceEeecccCCCCceEEEEecc----cHHHHHHHHhCCeEE
Confidence 23322200 011122222 5566666788 899999996 77777763 335666999988864
No 57
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.40 E-value=6.1e-11 Score=101.09 Aligned_cols=189 Identities=19% Similarity=0.225 Sum_probs=120.3
Q ss_pred CceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeec
Q 043436 71 GNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFR 150 (302)
Q Consensus 71 ~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~ 150 (302)
.++++.+.+++|.|+|+|-|+|.+.+.+.|++..+++ +.++.++.|+.+|...+ +|++|+.+.++||++ ++..
T Consensus 73 ~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~----~~~~a~~~AH~aEV~~g--tGLGDVvAq~~GGlV-iR~~ 145 (283)
T COG1829 73 DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGL----GEESAARIAHVAEVENG--TGLGDVVAQYTGGLV-IRVK 145 (283)
T ss_pred cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHcC--CCchHHHHHhcCcEE-EEec
Confidence 4588999999999999999999999999999998874 46789999999987555 499999999999955 4433
Q ss_pred cccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHH-HHHccCHHHHH
Q 043436 151 KEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQA-AILEKNYSKLA 229 (302)
Q Consensus 151 ~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-al~~~d~~~~~ 229 (302)
+..+ |...+..++.+++ + ++..+-.+.+|++++..-. .++|++...++.. .|++-.++.|
T Consensus 146 pG~P---g~~~vd~Ip~~~~-~-V~~~~~g~l~T~~vi~~~~-------------~~~i~~~g~~~l~ellk~Ptle~f- 206 (283)
T COG1829 146 PGGP---GEGEVDRIPVPGL-R-VITISLGELSTKSVITDEV-------------VRKINEAGKRALAELLKNPTLENF- 206 (283)
T ss_pred CCCC---CeEEEEEeecCCc-e-EEEEEcccccHHHhhhhHH-------------HHHHHHHHHHHHHHHHhCCCHHHH-
Confidence 3322 3334555554332 2 3333444568988876421 1233344444444 4455566655
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHH
Q 043436 230 ELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDA 292 (302)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~ 292 (302)
|+.+.+.-+.+. +.+.++. .++.....|. ++.+.--|=++|++.+. .+..+.+.+.
T Consensus 207 --~~~a~~FA~~~G----l~~~~v~~~~~~~~~~g~l~as~~mlg~tVFa~~~~-~e~~~~~~~~ 264 (283)
T COG1829 207 --MEEAREFARRTG----LMSEEVKEAAEALHSVGGLGASMAMLGVTVFALSPE-AERLAEVGKD 264 (283)
T ss_pred --HHHHHHHHHHhC----cCHHHHHHHHHHhhhcCchhHhHHhhCcEEEEeccc-cchHHHHHHh
Confidence 555555555443 4433332 4444444455 67777666689999853 3344444433
No 58
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=99.30 E-value=1.8e-10 Score=100.03 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHhHhcCCC-CCCCceEEEE-Ee-------------------------CCC--CCCCCchHHHHHHHH
Q 043436 47 VRLVMAICKVFFKYCKDNKID-LHKGNFTLSY-DT-------------------------NIP--RQTGLSGSSAIVCAA 97 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~-~~~~g~~i~i-~s-------------------------~iP--~~~GLgSSsA~~va~ 97 (302)
-.+|..|++.++.|+...+.+ +...++.|.+ .| ++| .+.|||||+|++.++
T Consensus 86 NPFve~ai~yvi~yf~~~~~~~lc~q~L~Vt~l~sddaY~~qp~s~~~~~~~~~~~F~~~~~~eV~KTGLGSSAam~T~l 165 (459)
T KOG4519|consen 86 NPFVEHAIQYVIAYFHLATLHKLCLQGLDVTILGSDDAYSYQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTAL 165 (459)
T ss_pred CcHHHHHHHHHHHHhhhccchhHHhcCceEEEeecccccccCcccccccCCCCceeeeccccccccccCccchHHHHHHH
Confidence 357777888887777443321 1113444441 11 233 689999999999999
Q ss_pred HHHHHHHhCC---CC-----CCC---cccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeecccccc---cc---Cc
Q 043436 98 LDCLLDFYKV---RH-----LVK---VEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMD---EL---GH 159 (302)
Q Consensus 98 ~~al~~~~~~---~~-----~ls---~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~---~~---g~ 159 (302)
+.++...++. +. +++ .+-+..||+.++- .+|+.|+.-|+.+++||...+-+|++.-+. +. +.
T Consensus 166 v~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~rYrRF~P~lis~lp~~i~~~~ 245 (459)
T KOG4519|consen 166 VAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQRYRRFSPELISFLPQVIVTGL 245 (459)
T ss_pred HHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccceeeeeCCHHHHHHHHHHHhccC
Confidence 9777776642 10 022 1235667777776 888888888999999999888778764221 00 10
Q ss_pred -----------ccccccCC-CCCC---CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHH-------------
Q 043436 160 -----------GIYKPMDI-DLLP---PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQ------------- 211 (302)
Q Consensus 160 -----------~~~~~l~~-~~~~---~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~------------- 211 (302)
+.|..... ..+| .+++.......+|..++.+|+.....++++...++..+..
T Consensus 246 ~~~el~~~V~k~~W~~~~~~f~LP~~~~L~mGd~~gGSsTp~mV~kVk~Wq~s~~pe~~k~~~~lddansr~~~~l~kl~ 325 (459)
T KOG4519|consen 246 PLNELIGTVLKGKWDNKRTEFSLPPLMNLFMGDGSGGSSTPSMVGKVKKWQMSDPPEARKNWQNLDDANSRLETKLNKLS 325 (459)
T ss_pred hhHHHHHHhhhhhcccccccccCCceeeeeeecCCCCCCcHHHHHHHHHHhhcCChhHhhhhcchhhHHHHHHhhhhhhh
Confidence 12322211 2355 3444432334678889988887655554333332222111
Q ss_pred --------HHHHHHHHHHcc--------CHHHHHHHHHHHHHHHHhhcCCCCCC-CccHH--HHHHHHHc-CC-ceeecC
Q 043436 212 --------MAAEGQAAILEK--------NYSKLAELMNHNFDLRRRMFGDDVLG-ALNIE--MVEIARRF-GA-ASKFTG 270 (302)
Q Consensus 212 --------~~~~~~~al~~~--------d~~~~~~~~~~~~~~~~~l~~~~~~~-~~~l~--l~~~a~~~-g~-gaklsG 270 (302)
...+.++.|... .+-++.+.|.....+++++..-..+. .|+.+ |.+..+.. |+ ++.+.|
T Consensus 326 ~l~~~h~d~~~~v~eSl~~~~~~~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lLD~~~sl~GVl~~gvPG 405 (459)
T KOG4519|consen 326 KLAKDHWDVYLRVIESLSVLTINEAIIKELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPG 405 (459)
T ss_pred HhhhhchhHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHhhhhhcccceEEecccC
Confidence 112233333322 23344555666666777765212222 13333 66766665 88 999999
Q ss_pred CCc--eEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 271 SGG--AVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 271 aGg--~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
||| .++++...+.+...++.+.|+..++..
T Consensus 406 AGGfDAif~it~~dvd~~~~~~~~w~~~~V~~ 437 (459)
T KOG4519|consen 406 AGGFDAIFAITLGDVDSGTKLTQAWSSHNVLA 437 (459)
T ss_pred CCCcceEEEEeecchhHHHHHHhhhcccCeeE
Confidence 999 788887654567889999998877653
No 59
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.23 E-value=3.4e-11 Score=87.03 Aligned_cols=80 Identities=29% Similarity=0.373 Sum_probs=65.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCC--CceEEEEeeCCcchHHHHHH
Q 043436 216 GQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGS--GGAVIAFCPNGPSQVELLED 291 (302)
Q Consensus 216 ~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGa--Gg~~~al~~~~~~~~~~~~~ 291 (302)
|++||.++|++.|+++|+.+|......+ ....+|+++ +++.+++.|+ ++++||| |||+++|+++ ++.++++.+
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~-~~~~~~v~~ 77 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENY--REVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKD-EDDAERVAE 77 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESS-HHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHH--HHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECC-HHHHHHHHH
Confidence 5789999999999999999886311111 235568887 9999999997 9999999 6799999965 788999999
Q ss_pred HHHHcCC
Q 043436 292 ACRKAGF 298 (302)
Q Consensus 292 ~l~~~g~ 298 (302)
+|++.+.
T Consensus 78 ~l~~~~~ 84 (85)
T PF08544_consen 78 ALREHYK 84 (85)
T ss_dssp HHHHHTH
T ss_pred HHHHhCC
Confidence 9988653
No 60
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.15 E-value=2.9e-10 Score=95.83 Aligned_cols=213 Identities=17% Similarity=0.197 Sum_probs=130.1
Q ss_pred CCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCee
Q 043436 66 IDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLV 145 (302)
Q Consensus 66 ~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~ 145 (302)
+.+.+.+-++++...||.++|+|||++..++-++-.+...++. ++.-.....+..+|+ +.+++.+.++||++
T Consensus 88 is~fp~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LG--lsk~~mldy~lmier------hpdn~~a~mmGgf~ 159 (355)
T KOG1537|consen 88 ISIFPITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLG--LSKGSMLDYSLMIER------HPDNAVAEMMGGFL 159 (355)
T ss_pred EeecccceeeeecCCccccccccchhhhhhhhheecchHhhcC--CccccchhHHHHHhh------ChHHHHHHHHhhHH
Confidence 3333456788888999999999999999999999999998888 888888777777776 34445555555543
Q ss_pred EEeeccc--------------ccccc---Ccc---cccccCC------CCCC--CEEEEEeCCCCChHHHHHHHHHhhhc
Q 043436 146 HMDFRKE--------------HMDEL---GHG---IYKPMDI------DLLP--PLYLIYAENPSDSGKVHSTVRQRWLD 197 (302)
Q Consensus 146 ~~~~~~~--------------~~~~~---g~~---~~~~l~~------~~~~--~~~l~~~~~~~~t~~~~~~~~~~~~~ 197 (302)
= .|-+. .+-.. |.+ .++|+++ ++-+ .+++++++....|+++...+...+..
T Consensus 160 G-Sflr~l~e~E~~~~~~~ad~ilp~~~gg~~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~R~vLPt~yp~ 238 (355)
T KOG1537|consen 160 G-SFLRALLESEAKVSGYHADNILPAIMGGFVLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKMRAVLPTEYPM 238 (355)
T ss_pred H-HHHHHhCHhhhhhcCCCHHHhcccccCCeeeecCCCcccccccccCCCCccceEEEEeccccccchhhhhhcCccccc
Confidence 1 00000 00000 111 1333333 1111 57888899888887664433221111
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHH--HHHHHhhcCCCCCCCccHH-HHHHHHHc---CC-ceee
Q 043436 198 GDEFIISSMKEVAQMAAEGQAAILEK--NYSKLAELMNHN--FDLRRRMFGDDVLGALNIE-MVEIARRF---GA-ASKF 268 (302)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~al~~~--d~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~-l~~~a~~~---g~-gakl 268 (302)
.+.-.++++++. +..|+.++ +......+|.+. |.++..+ -|.++ +...+... |. |..+
T Consensus 239 --~d~V~NlqrlA~----LttAl~~~p~n~~L~y~~m~DkvhqPyRa~L-------IPGl~~il~~~~p~t~pGl~Gicl 305 (355)
T KOG1537|consen 239 --VDHVWNLQRLAA----LTTALLEGPDNVMLGYALMSDKVHQPYRAPL-------IPGLEAILKAALPATYPGLFGICL 305 (355)
T ss_pred --eeeeecHHHHHH----HHHHHhcCCCchhhhhhhhhccccCcccccc-------CccHHHHHHhhCcccCCceeeEEe
Confidence 011112333223 34566666 344455565442 2333322 25666 77777665 88 9999
Q ss_pred cCCCceEEEEeeCC-cchHHHHHHHHHHcCCcc
Q 043436 269 TGSGGAVIAFCPNG-PSQVELLEDACRKAGFSI 300 (302)
Q Consensus 269 sGaGg~~~al~~~~-~~~~~~~~~~l~~~g~~~ 300 (302)
||||++++|+.++. ++-.+++.+++.|.|+.+
T Consensus 306 SGAGPT~lAlatenf~eI~~~mv~~F~K~G~kc 338 (355)
T KOG1537|consen 306 SGAGPTALALATENFQEIGEKMVEAFWKVGHKC 338 (355)
T ss_pred cCCCCeeEEEecCcHHHHHHHHHHHHHhhCcee
Confidence 99999999998742 245788899999999864
No 61
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=71.39 E-value=12 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=33.8
Q ss_pred cHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 252 NIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 252 ~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
.+. |.++++++|. -.++|.-.+..+--++ .++++.+.+.|+++
T Consensus 25 ~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~--~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 25 QLRALAEIAEKYGDGEIRLTTRQNLQLRGVP--EENLPAIFEELKEA 69 (69)
T ss_dssp HHHHHHHHHHHHSTSEEEEETTSCEEEEEEE--GGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEECCCCeEEEeCCC--HHHHHHHHHHHHcC
Confidence 344 8899999998 6899998886655566 67899999988763
No 62
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=66.49 E-value=23 Score=29.33 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 48 RLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 48 ~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
..+.++...++..+..+|++. -++-.++...+|- --.+.+++.+++++++++ ++.++|.+-|..+|.
T Consensus 93 g~i~G~~glLl~~a~~~gi~a--i~L~~e~p~y~pD-------P~AA~alL~~L~kllgl~--vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 93 GGIIGASGLLLGVSELEGIPG--ACLMGETPGYMID-------PKAAKAVLEVLCKMLSLE--VSVEALEERAKEMEK 159 (188)
T ss_pred CccccHHHHHHHHHHHCCCCe--EEEEEeCCCCCCC-------hHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence 345566666777777767632 2333344334444 456677789999999999 999999998888875
No 63
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=64.98 E-value=10 Score=33.92 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=38.2
Q ss_pred CCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 249 GALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 249 ~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
+...+. ++++|+++|. ..++++-+|--|-..+ .++++++.++|++.|+.+
T Consensus 43 ~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~--~e~~~~v~~~L~~iG~~~ 94 (317)
T COG2221 43 SAETLRKIADIAEKYGDGLIHITSRQGLEIPGIS--PEDADDVVEELREIGLPV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCceEeccCC--HHHHHHHHHHHHHcCCCC
Confidence 334444 8999999999 7999999995443333 678999999999888753
No 64
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=49.02 E-value=63 Score=27.69 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH--H-HHHHhhcCCCCCCCccHHHHHHHHHcCCceeecCC-CceEEEEeeCCcch
Q 043436 210 AQMAAEGQAAILEKNYSKLAELMNHN--F-DLRRRMFGDDVLGALNIEMVEIARRFGAASKFTGS-GGAVIAFCPNGPSQ 285 (302)
Q Consensus 210 ~~~~~~~~~al~~~d~~~~~~~~~~~--~-~~~~~l~~~~~~~~~~l~l~~~a~~~g~gaklsGa-Gg~~~al~~~~~~~ 285 (302)
.+...++.++..+||.+.+.+.+... . ...+.+ +...+-.+.+...+ +... |++++++---+---
T Consensus 173 ~~~~~~~~~~~~~gd~~~l~~~~~~~~~~p~~~~~l-----l~~RN~~~~~~i~~------~l~~~~~~fvvVGa~HL~G 241 (259)
T PF01963_consen 173 EKMLEQLIEAWKNGDLDALMELMKEDESFPELYEVL-----LDERNRRWAEKIEE------LLKEGGTVFVVVGAGHLPG 241 (259)
T ss_pred hHHHHHHHHHHHccCHHHHHHHHHhcccCHHHHHHH-----HHHHhHHHHHHHHH------HHhcCCCEEEEEcchhccc
Confidence 35567788899999998888887662 1 111111 00000012222221 1222 23444443211123
Q ss_pred HHHHHHHHHHcCCcccC
Q 043436 286 VELLEDACRKAGFSIEP 302 (302)
Q Consensus 286 ~~~~~~~l~~~g~~~~~ 302 (302)
...+.+.|++.|+.+.|
T Consensus 242 ~~gvl~lLr~~Gy~V~~ 258 (259)
T PF01963_consen 242 EDGVLDLLRKKGYTVEP 258 (259)
T ss_pred hhhHHHHHHhCCceeec
Confidence 56899999999999875
No 65
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=42.98 E-value=1.1e+02 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 043436 201 FIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM 242 (302)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l 242 (302)
.+.+.+..+.+...++.++|+++|.+.+.+.+.+....++++
T Consensus 236 ~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~~~ 277 (279)
T PRK07417 236 ALLRSLASYRQSLDQLEELIEQENWSALEQKLEQTQELRPNF 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 344555666677788899999999999999998877766654
No 66
>PRK00068 hypothetical protein; Validated
Probab=42.32 E-value=66 Score=33.66 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 043436 202 IISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM 242 (302)
Q Consensus 202 ~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l 242 (302)
..+.++++.+..+++.+|+++|||..+|+.+.+-.+.++++
T Consensus 926 ~~~~l~~a~~a~~~a~~Alk~GDw~~yG~a~~~L~~al~~~ 966 (970)
T PRK00068 926 KAAALKEAQDAYNKAIEAQKSGDFAEYGEALKELDDALNKY 966 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44556777788889999999999999999998876666544
No 67
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.29 E-value=97 Score=21.00 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=30.7
Q ss_pred HHHHHHHcCCceeecC-----CCceEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 255 MVEIARRFGAASKFTG-----SGGAVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 255 l~~~a~~~g~gaklsG-----aGg~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
+-+.+++.|..+++.- +.||.+++.-+ .++.+.+.+.|+++|+..
T Consensus 17 ~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~-~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 17 AEKLLKKNGIPVRLIPTPREISAGCGLALRFE-PEDLEKIKEILEENGIEY 66 (73)
T ss_pred HHHHHHHCCCcEEEeCCChhccCCCCEEEEEC-hhhHHHHHHHHHHCCCCe
Confidence 4455566666455432 12577777665 578999999999999764
No 68
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=40.51 E-value=1.4e+02 Score=25.66 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 49 LVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 49 ~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
.+.+....++.++..+|+ +++.+...+. |-.=..-.+.+++.+++++++++ ++.++|.+-|..+|.
T Consensus 150 ~i~G~~g~ll~~a~~~gi----~~i~Ll~et~-----~~~PDP~AA~~ll~~l~~l~~~~--id~~~L~e~Ae~ie~ 215 (238)
T TIGR00161 150 NLNGISGTLLTRCAVNDI----PAICLLAETL-----GPYPDPRAAASLVEVLNKMLNTN--VDPEPLLKEAEAIES 215 (238)
T ss_pred EEechhHHHHHHHHHcCC----CEEEEEEeCC-----CCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHHHH
Confidence 344555556666665565 2355544431 11123445667788999999999 999999998888875
No 69
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=38.01 E-value=1.4e+02 Score=26.52 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 043436 202 IISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM 242 (302)
Q Consensus 202 ~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l 242 (302)
+.+.+..+.+...++.++|+.+|.+.|.+.+.+....++.+
T Consensus 248 ~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~~~ 288 (307)
T PRK07502 248 VLEMLGRFTEDLAALQRAIRWGDGDALFDLFTRTRAIRRGI 288 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455556667788899999999999999999887777665
No 70
>PRK08507 prephenate dehydrogenase; Validated
Probab=37.80 E-value=1.3e+02 Score=26.21 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRR 240 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~ 240 (302)
+.+..+.+...++.++|.++|.+.|.+.+.+....++
T Consensus 237 ~~l~~~~~~l~~~~~~l~~~d~~~~~~~~~~~~~~r~ 273 (275)
T PRK08507 237 EAIDEFIKELEQFKQLIENEDWEELEEWMEQANKLRE 273 (275)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3444445556777788888898888888887765554
No 71
>PRK06545 prephenate dehydrogenase; Validated
Probab=33.22 E-value=3.8e+02 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 043436 202 IISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM 242 (302)
Q Consensus 202 ~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l 242 (302)
..+.+.++.+...+++++|+.+|.+.+.+++.+.+..++.+
T Consensus 239 ~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~~~ 279 (359)
T PRK06545 239 LLDALDEWIEDLDRARDALESGDAEAIAELFDAGKAGRDRL 279 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 34445555566777888888888888888888776666654
No 72
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=30.33 E-value=1.3e+02 Score=26.61 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHH-hHhcCCCCCCCceEEEEEeCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 48 RLVMAICKVFFKY-CKDNKIDLHKGNFTLSYDTNIPRQTGLSGSS-AIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 48 ~~v~~~~~~~~~~-~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSs-A~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
.+|...++.+.++ .+-.|.++ -|.+-.-+-++|.+.|+.|++ +..|++.++-..-+... +|---+.+.|+.+|.
T Consensus 297 ~~VL~Saqs~w~~r~~vDGlpv--fg~~W~~~aelP~~~g~~S~sLSg~v~~~~~aerdlsvq--lsgwmlmeaa~~a~~ 372 (377)
T COG4833 297 AIVLASAQSAWDYRQTVDGLPV--FGAFWDREAELPTAGGEQSRSLSGAVHSSAIAERDLSVQ--LSGWMLMEAAHSAAA 372 (377)
T ss_pred HHHHHHHHHHHHhhhccCCeee--ecccccchhhccCCCCccchhhhhHHHHHHHHhhhheeh--hhhHHHHHHHHHHHH
Confidence 5666666666665 22123322 234444556899999997765 44555554444444445 555556666665553
No 73
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=29.74 E-value=67 Score=21.89 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=28.0
Q ss_pred HHHHHHHcCCceeecCCC---------ce-EEEEeeCCcchHHHHHHHHHHcCCccc
Q 043436 255 MVEIARRFGAASKFTGSG---------GA-VIAFCPNGPSQVELLEDACRKAGFSIE 301 (302)
Q Consensus 255 l~~~a~~~g~gaklsGaG---------g~-~~al~~~~~~~~~~~~~~l~~~g~~~~ 301 (302)
+-+.++++|....+-.|+ |. ++.+..+ .+..+++.+.|+++|+.++
T Consensus 19 is~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~-~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 19 ISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGD-DEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp HHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES--HHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECC-HHHHHHHHHHHHHCCCeEE
Confidence 556666777644444443 32 3333322 4568999999999998875
No 74
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=28.44 E-value=95 Score=28.40 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=29.9
Q ss_pred ccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCc
Q 043436 251 LNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 251 ~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
..+. |.++++++|. ..++|--+.-.+.-++ .++++.+.+.|++.|+.
T Consensus 44 eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~--~edl~~i~~~L~~~Gl~ 92 (341)
T TIGR02066 44 DTLRKLCDIADKYSDGYLRWTIRNNVEFLVSD--ESKIQPLIDELEEVGFP 92 (341)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccCCEEEecCC--HHHHHHHHHHHHhccCC
Confidence 3344 6677777776 5777755554444444 56777777777776654
No 75
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=27.82 E-value=98 Score=29.04 Aligned_cols=10 Identities=0% Similarity=-0.419 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 043436 285 QVELLEDACR 294 (302)
Q Consensus 285 ~~~~~~~~l~ 294 (302)
+...+...|.
T Consensus 172 DT~~l~~~L~ 181 (402)
T TIGR02064 172 DTLKACYELT 181 (402)
T ss_pred ccHHHHHHHH
Confidence 3444444443
No 76
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=27.11 E-value=2.1e+02 Score=24.73 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 043436 206 MKEVAQMAAEGQAAILEKNYSKLAELMN 233 (302)
Q Consensus 206 ~~~i~~~~~~~~~al~~~d~~~~~~~~~ 233 (302)
+.++.+...++.++|.++|.+.|.++|.
T Consensus 230 l~~~~~~L~~l~~~l~~~d~~~l~~~l~ 257 (258)
T PF02153_consen 230 LDEFIKELNELREALEAGDEEELEELLE 257 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 3333444555556666666666666554
No 77
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=25.75 E-value=1.4e+02 Score=22.44 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHHcCC-ceeecCCCc------eEEEEeeCCcchHHHHHHHHHHc
Q 043436 255 MVEIARRFGA-ASKFTGSGG------AVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 255 l~~~a~~~g~-gaklsGaGg------~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
+.+...+.|. ..|++-.|| +.+.+.-+ .+..+++.+.+++.
T Consensus 16 l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGve-de~v~~vl~iIk~~ 63 (109)
T PF06153_consen 16 LSDALNENGFRVTKLSSTGGFLREGNTTLLIGVE-DEKVDEVLEIIKEN 63 (109)
T ss_dssp HHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEE-GGGHHHHHHHHHHH
T ss_pred HHHHHHHCCceEEEEecccceeccCCEEEEEEec-HHHHHHHHHHHHHh
Confidence 7788888899 889998884 44444433 56778888777664
No 78
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=24.93 E-value=2.8e+02 Score=27.95 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 043436 200 EFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM 242 (302)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l 242 (302)
+.+.+.+.++.+...++.++|+++|.+.+.+.+.+....++.+
T Consensus 176 ~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~~~ 218 (673)
T PRK11861 176 AALLDELDAYTAVLARLRAAIDAGDGAALEAVFARSRAARAAW 218 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3345556666677888999999999999999998876666655
No 79
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=24.09 E-value=1.1e+02 Score=26.50 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhHhcCCCCCCCceEEEEEe--CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 49 LVMAICKVFFKYCKDNKIDLHKGNFTLSYDT--NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 49 ~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s--~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
.+.+....++.+|..+|+ +++-+...+ +.|- --.++.++.++|++++++ ++.++|.+-|..+|.
T Consensus 153 ~I~G~~g~ll~e~~~r~i----~a~~ll~et~~~~PD-------P~AAa~vve~lnk~~~l~--V~td~L~keAe~i~~ 218 (244)
T COG1938 153 TIVGPSGALLNECLKRGI----PALVLLAETFGDRPD-------PRAAARVVEALNKMLGLN--VDTDKLEKEAEEIEE 218 (244)
T ss_pred eeecccHHHHHHHHHcCC----CeEEEeccccCCCCC-------hHHHHHHHHHHHHHhcCc--cCHHHHHHHHHHHHH
Confidence 444444555555655555 346665555 4452 223445677999999999 999988888877765
No 80
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.59 E-value=1.6e+02 Score=26.66 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCCccHH-HHHHHHHcCC-ceeecCCCceE------------------EEEeeCCcchHHHHHHHHHHcCCc
Q 043436 248 LGALNIE-MVEIARRFGA-ASKFTGSGGAV------------------IAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 248 ~~~~~l~-l~~~a~~~g~-gaklsGaGg~~------------------~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
++..++. ++..+.+.|+ -.|+||+.|.+ +++++| --...+....|+++|..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTN-G~~L~~~a~~Lk~AGl~ 113 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTN-GVLLARRAADLKEAGLD 113 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecc-hhhHHHHHHHHHHcCCc
Confidence 4445555 7777777777 78888887521 344443 23456677777777754
No 81
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=23.05 E-value=2.5e+02 Score=24.11 Aligned_cols=46 Identities=28% Similarity=0.448 Sum_probs=33.1
Q ss_pred cHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCccc
Q 043436 252 NIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSIE 301 (302)
Q Consensus 252 ~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~~~ 301 (302)
..| +.+.|.+.|+ -..-. .|.+..+|+ +.+...+.+.|++.|+.++
T Consensus 144 ~~d~~~e~aIe~GaeDve~~--d~~~~~~c~--p~~~~~v~~~L~~~g~~i~ 191 (234)
T PF01709_consen 144 DEDELMEDAIEAGAEDVEED--DGEFEFICD--PSDLSAVKKALEKKGYEIE 191 (234)
T ss_dssp -HHHHHHHHHHHTESEEEEC--TSEEEEEEE--GGGHHHHHHHHHHTT---S
T ss_pred ChHHHHHHHHhCCCcEeeec--CCeEEEEEC--HHHHHHHHHHHHHcCCCee
Confidence 345 8899999888 55522 466777887 8899999999999998653
No 82
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=1.8e+02 Score=25.06 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=24.8
Q ss_pred HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 255 MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 255 l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
+.+.+.+.|+ -.-.. +|++..++. +++...+.++|+++|+..
T Consensus 152 l~e~~ieagaeDv~~~--~~~~~V~t~--p~~~~~V~~~L~~~g~~~ 194 (241)
T COG0217 152 LLEAAIEAGAEDVEED--EGSIEVYTE--PEDFNKVKEALEAAGYEI 194 (241)
T ss_pred HHHHHHHCCchhhhcC--CCeEEEEEC--hHHHHHHHHHHHHcCCce
Confidence 6666666655 32222 555555554 566777777777776543
No 83
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=20.57 E-value=1.1e+02 Score=20.77 Aligned_cols=28 Identities=18% Similarity=0.503 Sum_probs=20.3
Q ss_pred eeecCCCceEEEEeeCCcchHHHHHHHHHH
Q 043436 266 SKFTGSGGAVIAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 266 aklsGaGg~~~al~~~~~~~~~~~~~~l~~ 295 (302)
+-++|- -+++.++++ ++.++++.+.+++
T Consensus 42 GtIAgd-DTilvi~~~-~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 42 GTIAGD-DTILVICRS-EEDAEELEEKLKE 69 (70)
T ss_dssp EEEEES-SEEEEEEST-TSHHHHHHHHHHT
T ss_pred EEEeCC-CEEEEEeCC-HHHHHHHHHHHHh
Confidence 444432 478888886 7789999998875
Done!