Query 043436
Match_columns 302
No_of_seqs 182 out of 1615
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 08:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k17_A LIN0012 protein; protei 100.0 4.9E-40 1.7E-44 300.2 29.3 288 2-302 36-348 (365)
2 3k85_A D-glycero-D-manno-hepto 100.0 5.2E-41 1.8E-45 306.0 16.5 276 2-301 38-327 (357)
3 3gon_A Phosphomevalonate kinas 100.0 1.2E-38 4E-43 288.1 26.4 274 2-301 31-324 (335)
4 2pg9_A Phosphomevalonate kinas 100.0 2.7E-38 9.3E-43 286.0 26.3 271 2-300 33-325 (337)
5 4hac_A Mevalonate kinase; GHMP 100.0 2.1E-35 7.3E-40 265.4 25.7 254 2-300 50-308 (321)
6 1pie_A Galactokinase; galactos 100.0 2E-33 7E-38 261.4 28.5 268 2-295 77-392 (419)
7 2a2c_A N-acetylgalactosamine k 100.0 8.5E-33 2.9E-37 260.9 29.1 270 2-295 84-446 (478)
8 2hfs_A Mevalonate kinase, puta 100.0 8.1E-33 2.8E-37 249.9 27.5 232 47-296 75-312 (332)
9 1kvk_A MK, mevalonate kinase; 100.0 1.6E-32 5.3E-37 253.7 26.9 279 2-299 34-366 (395)
10 3v2u_C Protein GAL3; rossmann 100.0 1.2E-32 4.2E-37 259.3 25.2 275 2-296 68-488 (520)
11 1wuu_A Galactokinase; galactos 100.0 3.1E-32 1E-36 252.0 26.8 270 2-296 65-378 (399)
12 2x7i_A Mevalonate kinase; tran 100.0 1.2E-32 4.1E-37 246.3 21.7 225 45-298 68-298 (308)
13 1kkh_A Mevalonate kinase; mixe 100.0 1.2E-31 4E-36 240.8 24.7 264 2-299 34-309 (317)
14 2oi2_A Mevalonate kinase; enzy 100.0 3.8E-31 1.3E-35 234.6 26.4 207 71-299 73-285 (292)
15 2cz9_A Probable galactokinase; 100.0 2.2E-30 7.7E-35 235.4 27.3 261 2-294 30-326 (350)
16 3pyf_A 4-diphosphocytidyl-2-C- 100.0 1.9E-29 6.4E-34 224.9 17.2 256 2-298 15-283 (306)
17 1h72_C HK, homoserine kinase; 100.0 1.8E-28 6.2E-33 217.9 19.1 221 46-298 56-282 (296)
18 3hul_A HSK, HK, homoserine kin 100.0 8.9E-28 3E-32 213.4 20.6 215 46-298 54-272 (298)
19 2v8p_A 4-diphosphocytidyl-2-C- 99.9 5.1E-26 1.8E-30 199.6 13.1 197 45-291 60-260 (271)
20 3qt5_A Mevalonate diphosphate 99.9 1.3E-24 4.3E-29 195.8 20.2 224 45-296 73-312 (332)
21 1uek_A 4-(cytidine 5'-diphosph 99.9 1.5E-25 5E-30 197.2 13.0 200 46-297 56-258 (275)
22 2gs8_A Mevalonate pyrophosphat 99.9 3.1E-23 1.1E-27 185.9 21.5 218 45-295 73-302 (317)
23 2ww4_A 4-diphosphocytidyl-2C-m 99.9 1.9E-24 6.5E-29 190.7 11.2 197 47-296 64-264 (283)
24 3lto_A Mevalonate diphosphate 99.9 7.4E-22 2.5E-26 175.7 22.7 211 51-296 77-307 (323)
25 1fi4_A Mevalonate 5-diphosphat 99.9 2.5E-21 8.6E-26 179.2 23.7 228 47-295 92-345 (416)
26 2hke_A Diphosphomevalonate dec 99.9 1E-19 3.4E-24 166.8 23.6 223 47-296 75-317 (380)
27 3f0n_A Mevalonate pyrophosphat 99.8 5.9E-19 2E-23 160.4 23.3 226 47-296 90-343 (414)
28 3gaa_A Uncharacterized protein 47.5 59 0.002 27.0 7.4 65 50-125 164-228 (252)
29 3ggo_A Prephenate dehydrogenas 37.3 71 0.0024 27.3 6.5 39 203-241 274-312 (314)
30 3b1f_A Putative prephenate deh 31.9 1.4E+02 0.0048 24.7 7.5 37 205-241 252-288 (290)
31 2g5c_A Prephenate dehydrogenas 30.4 1.5E+02 0.0051 24.4 7.3 39 202-240 241-279 (281)
32 3dhx_A Methionine import ATP-b 30.0 77 0.0026 22.3 4.6 47 255-301 38-93 (106)
33 3a7m_A Flagellar protein FLIT; 26.0 1.3E+02 0.0044 21.9 5.3 38 202-239 7-44 (122)
34 2p90_A Hypothetical protein CG 24.3 1.1E+02 0.0039 26.3 5.5 34 90-125 210-243 (319)
35 1lfp_A Hypothetical protein AQ 23.7 1.5E+02 0.005 24.7 5.8 44 253-300 149-194 (249)
36 4f3q_A Transcriptional regulat 22.7 1.9E+02 0.0065 23.9 6.3 45 253-300 151-197 (247)
37 3or1_A Sulfite reductase alpha 22.5 85 0.0029 28.5 4.4 43 255-299 118-163 (437)
38 2f86_B Hypothetical protein K1 20.5 1.2E+02 0.0042 22.4 4.4 27 207-233 12-38 (143)
39 1kon_A Protein YEBC, YEBC; alp 20.1 2.4E+02 0.0081 23.4 6.3 46 252-300 149-196 (249)
No 1
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=4.9e-40 Score=300.15 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=229.1
Q ss_pred CceEEEEEeeCCceeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCC
Q 043436 2 NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNI 81 (302)
Q Consensus 2 d~~~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~i 81 (302)
|++++|+++|+++..+.+.++...+.|...+.+. +..++++|++++++.+.+++.+.|.+. .|++|.|.++|
T Consensus 36 ~~~~~v~v~~~~~~~i~s~~~~~~~~~~~~~~~~------~~~~~~~yv~~~i~~~~~~~~~~g~~~--~g~~i~i~s~i 107 (365)
T 3k17_A 36 NRYITLTLEDSERNELWIPHYENPVSWPIGGELK------PDGEHWTFTAEAINIATTFLKSEGIEL--TPVKMVIETEL 107 (365)
T ss_dssp EEEEEEEEEECSSCEEECTTCSSCBCCCTTSCCC------CSCGGGHHHHHHHHHHHHHHHHTTCCC--CCEEEEEEESS
T ss_pred cCcEEEEEEECCCcEEEecCCCcceeeecccCCC------CCCChHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEEcCC
Confidence 6799999999988667777665556665432111 112456999999999998887666643 68999999999
Q ss_pred CC----CCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEe-ecccccc
Q 043436 82 PR----QTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMD-FRKEHMD 155 (302)
Q Consensus 82 P~----~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~-~~~~~~~ 155 (302)
|. ++|||||||+++|++.|++++++++ ++.++|+++|+.+|+ ++| ++|.+|+++++|||+++++ |++.++.
T Consensus 108 P~~~g~~~GLgSSaa~~va~~~al~~~~~~~--l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg~~~~~~~~~~~~~ 184 (365)
T 3k17_A 108 IDQSGAKYGLGSSAAATVAVINALMTKFYPE--ISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGGWIAYTTFDQEWVK 184 (365)
T ss_dssp BCTTSCBCSSCHHHHHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCSEEEEECCCHHHHH
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCCEEEEecCCHHHhh
Confidence 96 6799999999999999999999999 999999999999999 777 6677899999999999876 5432111
Q ss_pred cc-C-------------cccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 043436 156 EL-G-------------HGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAIL 221 (302)
Q Consensus 156 ~~-g-------------~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~ 221 (302)
.. + ...+.+++.+.- +++|++|+.+++|+++++.++..+...++.....++++.+++.++.++|.
T Consensus 185 ~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~ 263 (365)
T 3k17_A 185 HRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFH 263 (365)
T ss_dssp HHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 012344443322 79999999999999999988776655555566677778888999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcC--CCCCCCccHH-HHHHHHHcCCceeecCCC--ceEEEEeeCCcchHHHHHHHHHHc
Q 043436 222 EKNYSKLAELMNHNFDLRRRMFG--DDVLGALNIE-MVEIARRFGAASKFTGSG--GAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 222 ~~d~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~-l~~~a~~~g~gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
++|++.|+++|+++|..++++.. ...+++|++| +++.+++.|+.+|||||| ||+++|+++ ++.++++.++|++.
T Consensus 264 ~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~~Ga~ak~sGAGgGg~vial~~~-~~~~~~l~~~l~~~ 342 (365)
T 3k17_A 264 TKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKT-KELAEKLVNEWEKL 342 (365)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTSEEEECTTCSSSEEEEEESS-HHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHhcCCEEEecCCCCCCEEEEEECC-HHHHHHHHHHHHHC
Confidence 99999999999999999988750 0024889999 999999998778999999 599999986 56789999999999
Q ss_pred CCcccC
Q 043436 297 GFSIEP 302 (302)
Q Consensus 297 g~~~~~ 302 (302)
|+..++
T Consensus 343 g~~~~~ 348 (365)
T 3k17_A 343 GIKHLP 348 (365)
T ss_dssp TCEECC
T ss_pred CCEEEE
Confidence 998654
No 2
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.2e-41 Score=305.99 Aligned_cols=276 Identities=19% Similarity=0.353 Sum_probs=199.0
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEe
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDT 79 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s 79 (302)
|++++|+++|+++ +++.|.++.+...|+..+.+ +..+|.+|++++++.+.+. +... ..|++|.+.+
T Consensus 38 d~~~~v~i~~~~d~~i~i~s~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~l~~~----~~~~-~~g~~i~i~~ 105 (357)
T 3k85_A 38 NLYAYCTIEETNSGRIEINAYDAQCCKSYLSMSQL-------EIDGEASLIKGVYNRIIRD----YRLE-PKSFKITTYN 105 (357)
T ss_dssp EEEEEEEEEECSSSEEEEEETTTTEEEEEECCSSC-------CCCSSSHHHHHHHHHHHHH----TTCC-CCCEEEEEEE
T ss_pred eCcEEEEEEECCCCeEEEEECCCCceEEEeccccc-------cccchHHHHHHHHHHHHHh----cCCC-CCCEEEEEec
Confidence 6899999999876 88888876554455543321 1246889999999887653 2211 3689999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeec-ccccccc
Q 043436 80 NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFR-KEHMDEL 157 (302)
Q Consensus 80 ~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~-~~~~~~~ 157 (302)
+||.++|||||||++||++.|++++++++ ++.++++++|..+|+ ++|.+||.+|+++++|||++.+.|. ...+
T Consensus 106 ~iP~g~GLgSSaa~~va~~~al~~~~~~~--l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~--- 180 (357)
T 3k85_A 106 DAPAGSGLGTSSTMVVCILKAFIEWLSLP--LGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLV--- 180 (357)
T ss_dssp SSCSSSSSCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEE---
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeCCCce---
Confidence 99999999999999999999999999999 999999999999999 9999999999999999999987763 2211
Q ss_pred CcccccccCCCCC------CCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 043436 158 GHGIYKPMDIDLL------PPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAEL 231 (302)
Q Consensus 158 g~~~~~~l~~~~~------~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~ 231 (302)
.+.+++++.. ..++|++++.+++|++++.++...+...++...+.++.+.+++.++++||.++|++.|+++
T Consensus 181 ---~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~aL~~~d~~~lg~l 257 (357)
T 3k85_A 181 ---IVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARI 257 (357)
T ss_dssp ---EEEEECCCHHHHHHHHHTEEEECC---------------------CCTTHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---eEEEEecChhhhhhcCceEEEEECCCcccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2445544210 1688999999999999888764433322222344677777889999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHHHHHcCCccc
Q 043436 232 MNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDACRKAGFSIE 301 (302)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~g~~~~ 301 (302)
|+++|.+++++. ..+++|++| +++.+++.|+ |+|||||| ||+++|++ ++.++++.++|++.|+.+.
T Consensus 258 m~~~~~~l~~~~--~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~--~~~~~~~~~~l~~~g~~~~ 327 (357)
T 3k85_A 258 LGEGWENKKKMA--GAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVE--PTRKEEVVRALNNLNGFVM 327 (357)
T ss_dssp HHHHHHHTTC-------------CCSCTTTTSCCSEEEECCCC---CEEEECC--HHHHHHHHHHHHTSSSCBC
T ss_pred HHHHHHHHHhcC--CCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEec--HHHHHHHHHHHHHCCCeEE
Confidence 999998887652 368899999 9999999999 99999999 48999997 5678999999999887654
No 3
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=1.2e-38 Score=288.10 Aligned_cols=274 Identities=14% Similarity=0.141 Sum_probs=215.1
Q ss_pred CceEEEEEeeCCceeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCC
Q 043436 2 NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNI 81 (302)
Q Consensus 2 d~~~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~i 81 (302)
|+|++|+++|+++..+.+..+...+.+.. +.+++++..+++.+.++++..+.++ .|+++.|.|++
T Consensus 31 ~~~~~v~i~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~i~~~~~~l~~~~~~~--~~~~i~I~s~l 95 (335)
T 3gon_A 31 PIYMRAEIAFSDSYRIYSDMFDFAVDLRP-------------NPDYSLIQETIALMGDFLAVRGQNL--RPFSLAIYGKM 95 (335)
T ss_dssp EEEEEEEEEECSSCEEEETTSSSCBCSSC-------------CTTTHHHHHHHHHHHHHHHHTTCCC--CCEEEEEECCS
T ss_pred cceEEEEEEECCCCEEEEeCCCcccccCc-------------CCCcHHHHHHHHHHHHHHHHcCCCC--CceEEEEEecC
Confidence 68999999999886666554432222211 2345788888888888887777654 68999999999
Q ss_pred CCC---CCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEee-ccccccc-
Q 043436 82 PRQ---TGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDF-RKEHMDE- 156 (302)
Q Consensus 82 P~~---~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~-~~~~~~~- 156 (302)
|.+ +|||||||++||++.|++++++++ +++++++++|+.+|+..+..+|.+||+++.|||++++++ ++..+..
T Consensus 96 p~~~~~~GLgSSaa~~va~~~al~~~~~~~--~~~~~l~~la~~~E~~~~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~~ 173 (335)
T 3gon_A 96 EREGKKFGLGSSGSVVVLVVKALLALYNLS--VDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAW 173 (335)
T ss_dssp EETTEECSSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHH
T ss_pred CcccCCCCcchHHHHHHHHHHhhhhccccc--chHHHHHHHHHHHHHHhcCCCCCCCcceeecCCeEEEEeCCcccccee
Confidence 976 699999999999999999999999 999999999999999444444558999999999998773 3321100
Q ss_pred ---cC---------cccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccC
Q 043436 157 ---LG---------HGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKN 224 (302)
Q Consensus 157 ---~g---------~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d 224 (302)
.. .....+++.+.-.++++++++.+.+|.+.+..+...+. ...+..+..++.++..+|.++|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~~v~~v~~~~~------~~~~~~~~~~~~~~~~aL~~~d 247 (335)
T 3gon_A 174 LEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNIN------QNFLTSSKETVVSLVEALEQGK 247 (335)
T ss_dssp HHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHHHHHHGGGCC------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecccchhheecccccceeEEcCCccccceEEeecCChhhHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHhCc
Confidence 00 00122232211116889999999999999988765432 1345566688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCC--ceEEEEeeCCcchHHHHHHHHHHcCCccc
Q 043436 225 YSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSG--GAVIAFCPNGPSQVELLEDACRKAGFSIE 301 (302)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~g~~~~ 301 (302)
++.|+++|+++|.++++++ ..+++|++| |++.+++.|+++|+|||| ||+|+|+++ ++.++++.++|+++|++.+
T Consensus 248 ~~~lg~lm~~~h~~l~~l~--~~is~p~ld~l~~~a~~~g~~akltGAG~Ggc~ial~~~-~~~~~~i~~~~~~~Gi~~~ 324 (335)
T 3gon_A 248 SEKIIEQVEVASKLLEGLS--TDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFD-AQSTKTLKNRWADLGIELL 324 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTTCCHHHHHHHHTTTTSSEEEEECTTCSSSEEEEEECS-HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCC--CcCCCHHHHHHHHHHHhCCcEEEEccccchheEEEEECC-HHHHHHHHHHHHHCCCcEE
Confidence 9999999999999999986 578899999 999999998889999999 399999986 6789999999999998753
No 4
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=2.7e-38 Score=285.97 Aligned_cols=271 Identities=14% Similarity=0.161 Sum_probs=219.2
Q ss_pred CceEEEEEeeCCceeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCC
Q 043436 2 NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNI 81 (302)
Q Consensus 2 d~~~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~i 81 (302)
|+++++++++++++.+.+..++..+.+. + .+.++|++++++.+.+++...|... .|++|.|+|+|
T Consensus 33 ~~~~~v~v~~~~~~~i~s~~~~~~~~~~------~-------~~~~~~v~~~i~~~~~~~~~~g~~~--~g~~i~i~s~i 97 (337)
T 2pg9_A 33 PIYMRAEIAFSDSYRIYSDMFDFAVDLR------P-------NPDYSLIQETIALMGDFLAVRGQNL--RPFSLAIYGKM 97 (337)
T ss_dssp EEEEEEEEEECSSCEEEETTSSSCBCSS------C-------CTTTHHHHHHHHHHHHHHHHTTCCC--CCEEEEEECCS
T ss_pred cccEEEEEEeCCcEEEecCCCCceeeec------C-------CCCcHHHHHHHHHHHHHHHhcCCCC--CCEEEEEEccC
Confidence 5789999999877777776554332211 0 1234999999999999887656543 68999999999
Q ss_pred CCC---CCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEe-eccccccc-
Q 043436 82 PRQ---TGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMD-FRKEHMDE- 156 (302)
Q Consensus 82 P~~---~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~-~~~~~~~~- 156 (302)
|.+ +|||||||+++|++.|++++++++ ++.++++++|+.+|.++|.++|.+|+++++|||++++. |++.++..
T Consensus 98 P~~g~k~GLgSSaa~~va~~~al~~~~~~~--l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~ 175 (337)
T 2pg9_A 98 EREGKKFGLGSSGSVVVLVVKALLALYNLS--VDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAW 175 (337)
T ss_dssp EETTEECSSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEEEEecCChHHhhhh
Confidence 999 999999999999999999999999 99999999999999988999999999999999999876 44421100
Q ss_pred ------------c-CcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHc
Q 043436 157 ------------L-GHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILE 222 (302)
Q Consensus 157 ------------~-g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~ 222 (302)
. + ..+.+++.+ .+ +++|++|+.+++|+++++.+...+. ...++.+.+++.+++++|.+
T Consensus 176 ~~~~~~~~~l~~~~~-~~~~~l~~~~~~-~lvl~~~~~~~~T~~~~~~~~~~~~------~~~~~~~~~~~~~~~~aL~~ 247 (337)
T 2pg9_A 176 LEEENLATVLERDWG-FSISQVKPTLEC-DFLVGWTKEVAVSSHMVQQIKQNIN------QNFLTSSKETVVSLVEALEQ 247 (337)
T ss_dssp HHHSCHHHHHHSCCC-CEEEECCCCSCC-EEEEEECCCCCCHHHHHHHHGGGCC------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhcccccc-cceeeecCCCCc-eEEEEECCCccchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHc
Confidence 0 0 023444432 12 7999999999999999988765432 23456667888999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCC--ceEEEEeeCCcchHHHHHHHHHHcCCc
Q 043436 223 KNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSG--GAVIAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 223 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
+|++.|+++|+++|..++++. ..+++|+++ +++.+++.|+.+|||||| ||+|+|+++ ++.++++.++|++.|+.
T Consensus 248 ~d~~~lg~~m~~~~~~l~~l~--~~v~~p~l~~l~~~a~~~Ga~ak~sGaGgGg~vial~~~-~~~~~~~~~~l~~~g~~ 324 (337)
T 2pg9_A 248 GKSEKIIEQVEVASKLLEGLS--TDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFD-AQSTKTLKNRWADLGIE 324 (337)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC--TTTCCHHHHHHHHTTTTSSEEEEECTTCSSSEEEEEECS-HHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHHHHhc--CcCCCHHHHHHHHHHHHCCCEEEEeCCCCccEEEEEECC-HHHHHHHHHHHHHCCCE
Confidence 999999999999999888875 358899999 999999988778999999 599999986 56789999999999986
Q ss_pred c
Q 043436 300 I 300 (302)
Q Consensus 300 ~ 300 (302)
.
T Consensus 325 ~ 325 (337)
T 2pg9_A 325 L 325 (337)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=2.1e-35 Score=265.37 Aligned_cols=254 Identities=22% Similarity=0.294 Sum_probs=198.0
Q ss_pred CceEEEEEeeCCceeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCC
Q 043436 2 NFWASVKLEPSDDLVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNI 81 (302)
Q Consensus 2 d~~~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~i 81 (302)
|+|++|++++.+++.+.+.+..+. ++. ++.+++..++..+.+ .+. ..|++|.++++|
T Consensus 50 ~~~~~v~v~~~~~i~i~~~~~~~~--------~~~--------~~~~~~~~~~~~l~~----~~~---~~g~~i~i~~~i 106 (321)
T 4hac_A 50 ELRTRVRAELNDSITIQSQIGRTG--------LDF--------EKHPYVSAVIEKMRK----SIP---INGVFLTVDSDI 106 (321)
T ss_dssp EEEEEEEEEECSSEEEEETTEEES--------SCT--------TTSHHHHHHHHHHTT----TSC---CCCEEEEEEECC
T ss_pred ccCEEEEEEECCCEEEEECCCCcc--------ccc--------chhHHHHHHHHHHHH----hCC---CCCEEEEEECCC
Confidence 578888888865555555432100 110 112445444433322 231 368999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccCcc
Q 043436 82 PRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHG 160 (302)
Q Consensus 82 P~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~ 160 (302)
|.++|||||||+++|++.|++++++++ ++.++++++|.++|+ ++|. +|.+|++++++||++++ .+..
T Consensus 107 P~g~GLGSSsa~~va~~~al~~l~~~~--l~~~~l~~la~~~e~~~~g~-~~~~D~~~~~~Gg~~~~-~~~~-------- 174 (321)
T 4hac_A 107 PVGSGLGSSAAVTIASIGALNELFGFG--LSLQEIAKLGHEIEIKVQGA-ASPTDTYVSTFGGVVTI-PERR-------- 174 (321)
T ss_dssp CSCTTCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHSC-CCSHHHHHHHHCSEEEE-TTCC--------
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC-CcHHHHHHHHcCCeEEE-cCCc--------
Confidence 999999999999999999999999999 999999999999999 7777 67789999999999876 2211
Q ss_pred cccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 043436 161 IYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRR 240 (302)
Q Consensus 161 ~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~ 240 (302)
.+. ++ .+ +++|++|+.+++|.++++.++...+..+....+.+..+.+++.++.++|.++|++.|+++|+++|.+++
T Consensus 175 ~l~-~p--~~-~~vlv~p~~~~sT~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~~~ 250 (321)
T 4hac_A 175 KLK-TP--DC-GIVIGDTGVFSSTKELVANVRQLRESYPDLIEPLMTSIGKISRIGEQLVLSGDYASIGRLMNVNQGLLD 250 (321)
T ss_dssp EEC-CC--CC-EEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred eec-cC--CC-EEEEEECCCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 122 22 22 789999999999999988776555444444455667777888889999999999999999999998887
Q ss_pred hhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc--eEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 241 RMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG--AVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 241 ~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg--~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
.+. +++|+++ +++.+++.|+ |+||||||+ |+++|++ ++.++++.++|++.|..+
T Consensus 251 ~~~----v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~--~~~a~~~~~~l~~~g~~v 308 (321)
T 4hac_A 251 ALG----VNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTA--PEKCNQVAEAVAGAGGKV 308 (321)
T ss_dssp HHT----CCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEC--STTHHHHHHHHHHTTCEE
T ss_pred hcC----CCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcC--HHHHHHHHHHHHhCCCeE
Confidence 664 7899998 9999999999 999999994 9999994 678999999999988654
No 6
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=2e-33 Score=261.42 Aligned_cols=268 Identities=17% Similarity=0.249 Sum_probs=193.9
Q ss_pred CceEEEEEeeCCc--eeEeccCCC--CcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVH--DLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSY 77 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i 77 (302)
|++++|+++++++ +.+.+.+.. ....|...+ +.+ .+..+|.||++++++.+.+ .|..+ +.|++|.|
T Consensus 77 ~l~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~----~~~~~~~n~v~~~~~~l~~----~g~~~-~~g~~i~i 146 (419)
T 1pie_A 77 TIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDE-VEK----KDGELWSNYVKGMIVMLKG----AGYEI-DKGFELLI 146 (419)
T ss_dssp EEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTC-TTS----CCTTCTHHHHHHHHHHHHH----TTCCC-CSCEEEEE
T ss_pred cccEEEEEEECCCCEEEEEECCCCCcceeEEeccc-ccC----CCCcCHHHHHHHHHHHHHH----hCCCC-CCCEEEEE
Confidence 6789999998765 667665542 233343321 110 0113578999988877654 23433 26899999
Q ss_pred EeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecC---eeEEeecccc
Q 043436 78 DTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGG---LVHMDFRKEH 153 (302)
Q Consensus 78 ~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg---~~~~~~~~~~ 153 (302)
.++||.++|||||||+++|++.|++++++++ ++.++|+++|..+|+ ++|.++|++|++++++|| .+++++.+.
T Consensus 147 ~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~--ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~- 223 (419)
T 1pie_A 147 KGEIPTASGLSSSASLELLVGVVLDDLFNLN--VPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTL- 223 (419)
T ss_dssp EECSCTTSSSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTC-
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCC-
Confidence 9999999999999999999999999999999 999999999999999 899999999999999998 444443221
Q ss_pred ccccCcccccccCCC--CCCCEEEEEeCCCCChHH------------HHHHHHH------hhhcCcH-------------
Q 043436 154 MDELGHGIYKPMDID--LLPPLYLIYAENPSDSGK------------VHSTVRQ------RWLDGDE------------- 200 (302)
Q Consensus 154 ~~~~g~~~~~~l~~~--~~~~~~l~~~~~~~~t~~------------~~~~~~~------~~~~~~~------------- 200 (302)
.+.+++++ .+ .++|++|+.+++|.. +++.+.. .+...++
T Consensus 224 -------~~~~l~~~~~~~-~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~ 295 (419)
T 1pie_A 224 -------KYEMVPVELRDY-DIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDET 295 (419)
T ss_dssp -------CEEEEECCCTTE-EEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHH
T ss_pred -------ceEEeecCCCCc-EEEEEECCCccccccchHHHHHHHHHHHHHHHhhccccCchhhCCHHHHHHHHhhcCcHH
Confidence 34455432 12 688999998877642 2222211 1111111
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHc-CC-ceeecCCC--c
Q 043436 201 FIISSMKEVAQ--MAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRF-GA-ASKFTGSG--G 273 (302)
Q Consensus 201 ~~~~~~~~i~~--~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~-g~-gaklsGaG--g 273 (302)
...+..+.+.+ .+.++.++|.++|++.|+++|+++|..+++.+ .+++|+++ +++.+++. |+ |++||||| |
T Consensus 296 ~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~---~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg 372 (419)
T 1pie_A 296 LIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDY---EVTGLELDTLAETAQKQAGVLGARMTGAGFGG 372 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTS---CCCCHHHHHHHHHHHHSTTEEEEEECSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhcCCCceeeEecCCCCe
Confidence 11122233333 37788999999999999999999998888754 57899999 99999997 99 99999999 5
Q ss_pred eEEEEeeCCcchHHHHHHHHHH
Q 043436 274 AVIAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 274 ~~~al~~~~~~~~~~~~~~l~~ 295 (302)
|+++|+++ +.++++.++|++
T Consensus 373 ~v~al~~~--~~a~~~~~~l~~ 392 (419)
T 1pie_A 373 CAIALVAH--DNVSAFRKAVGQ 392 (419)
T ss_dssp EEEEEEEG--GGHHHHHHHHHH
T ss_pred EEEEEEch--hhHHHHHHHHHH
Confidence 99999984 456666666643
No 7
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=8.5e-33 Score=260.85 Aligned_cols=270 Identities=17% Similarity=0.178 Sum_probs=198.0
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccc-hhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSL-HHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYD 78 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~ 78 (302)
|++++|+++++++ +.+.+.+.+.. .|+.. +.++.. .+...|.||++++++.+++++.. + . ..|++|.|.
T Consensus 84 ~~~~~v~v~~~~~~~i~i~~~~~~~~-~~~~~~~~l~~~---~~~~~~~n~v~~a~~~v~~~~~~-~-~--~~g~~i~i~ 155 (478)
T 2a2c_A 84 EQDVLIAVEPVKTYALQLANTNPLYP-DFSTSANNIQID---KTKPLWHNYFLCGLKGIQEHFGL-S-N--LTGMNCLVD 155 (478)
T ss_dssp EEEEEEEEEECSSSCEEEEESSTTSC-CEEECCCCC--C---CSSCCHHHHHHHHHHHHHHHTTC-C-S--CCCEEEEEE
T ss_pred cccEEEEEEECCCCeEEEEECCCCCc-ceeccchhcccC---CCcccHHHHHHHHHHHHHHHHhc-c-C--CCceEEEEE
Confidence 6789999999764 77776654211 23221 111110 11235789999999988887643 1 1 368999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeec---CeeEEeecccccc
Q 043436 79 TNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYG---GLVHMDFRKEHMD 155 (302)
Q Consensus 79 s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~G---g~~~~~~~~~~~~ 155 (302)
|+||.++|||||||++||++.|++.+++++ +++++++++|..+|++.|.++|++|++++++| |+++++|.+.
T Consensus 156 s~IP~g~GLgSSAA~~va~~~al~~~~~~~--ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~--- 230 (478)
T 2a2c_A 156 GNIPPSSGLSSSSALVCCAGLVTLTVLGRN--LSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPL--- 230 (478)
T ss_dssp ECSCTTSSSCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTTT---
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEcCCC---
Confidence 999999999999999999999999999999 99999999999999989999999999999997 7887777541
Q ss_pred ccCcccccccCCCC-CCCEEEEEeCCCCChH-------------H---HHH-----------------------------
Q 043436 156 ELGHGIYKPMDIDL-LPPLYLIYAENPSDSG-------------K---VHS----------------------------- 189 (302)
Q Consensus 156 ~~g~~~~~~l~~~~-~~~~~l~~~~~~~~t~-------------~---~~~----------------------------- 189 (302)
.+.+++++. + .++|++|+.+++|. . ++.
T Consensus 231 -----~~~~~~~~~~~-~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~~~~~~~~~v~ 304 (478)
T 2a2c_A 231 -----RATDVKLPSGA-VFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLL 304 (478)
T ss_dssp -----EEEEECCCTTE-EEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCCCHHHHHHHHTCCHHHHHH
T ss_pred -----ceEEecCCCCc-EEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhhhcccccccchHHhhhhhhcccHHHHHH
Confidence 344554321 2 68899999887653 1 111
Q ss_pred HHHHhhhcCc---H-----------------------------HHHHHHHHH--HHHHHHHHHHHHc---cCHHHHHHHH
Q 043436 190 TVRQRWLDGD---E-----------------------------FIISSMKEV--AQMAAEGQAAILE---KNYSKLAELM 232 (302)
Q Consensus 190 ~~~~~~~~~~---~-----------------------------~~~~~~~~i--~~~~~~~~~al~~---~d~~~~~~~~ 232 (302)
.+...+...+ + ...+..+.+ ..++.+++.+|.+ +|++.|+++|
T Consensus 305 ~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm 384 (478)
T 2a2c_A 305 VTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELM 384 (478)
T ss_dssp HHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHH
T ss_pred HHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 1111111000 0 011222222 2347788889998 9999999999
Q ss_pred HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcchHHHHHHHHHH
Q 043436 233 NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~~~~~~~~l~~ 295 (302)
+++|.+++.++ .+++|++| +++.+++.|+ |+|||||| ||+++|++ ++.++++.++|++
T Consensus 385 ~~sh~slr~l~---~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~--~~~~~~~~~~l~~ 446 (478)
T 2a2c_A 385 NQSHMSCRDMY---ECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVP--ADKLPSFLANVHK 446 (478)
T ss_dssp HHHHHHHHHTS---CCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEE--GGGHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEc--HHHHHHHHHHHHH
Confidence 99999999886 68999999 9999999999 99999998 59999998 4556777776655
No 8
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=8.1e-33 Score=249.87 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-
Q 043436 47 VRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK- 125 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~- 125 (302)
.+++..++..+++.+ |...+..|++|.++++||.++|||||||+++|++.|++++++++ ++.++|.++|+.+|.
T Consensus 75 ~~~~~~a~~~~~~~~---g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~--l~~~~l~~~a~~~E~~ 149 (332)
T 2hfs_A 75 RDEQIKAHQLVLDHL---KVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLN--LTDEEVNLSAFVGEGG 149 (332)
T ss_dssp HHHHHHHHHHHHHHT---TBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHGGG
T ss_pred chhHHHHHHHHHHHc---CCccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 467777777776643 44322258999999999999999999999999999999999999 999999999999999
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIIS 204 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 204 (302)
++|.++|. |++++++||++.+.+... ...+.+++.+ .+ +++|++|+.+++|.++++.+.......++.+..
T Consensus 150 ~~G~~~G~-D~~~~~~Gg~~~~~~~~g------~~~~~~~~~~~~~-~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~ 221 (332)
T 2hfs_A 150 YHGTPSGA-DNTAATYGGLILYRRQNG------KSVFKPIAFQQRL-YLVVVGTGINASTAKVVNDVHKMKQQQPVQFKR 221 (332)
T ss_dssp SSSCCCSH-HHHHHHHCEEEEEEECSS------SEEEEEECCCSCE-EEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred hcCCCCcH-hHHHHhcCCeEEEecCCC------CcceeeecCCCCc-EEEEEECCCCccHHHHHHHHHHHHHhCHHHHHH
Confidence 88999998 999999999987653321 1124455432 12 688899999999999988766544333333333
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc--eEEEEee
Q 043436 205 SMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG--AVIAFCP 280 (302)
Q Consensus 205 ~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg--~~~al~~ 280 (302)
.++.+..++.++.++|.++|++.|+++|+++|.+++.+. +++|+++ +++.+++.|+ +++|||||+ |++++++
T Consensus 222 ~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~~----~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~ 297 (332)
T 2hfs_A 222 LYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQID----VSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAA 297 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEec
Confidence 555666778889999999999999999999988888753 6789998 9999999999 999999995 9999998
Q ss_pred CCcchHHHHHHHHHHc
Q 043436 281 NGPSQVELLEDACRKA 296 (302)
Q Consensus 281 ~~~~~~~~~~~~l~~~ 296 (302)
+ ++.++++.++|++.
T Consensus 298 ~-~~~a~~~~~~l~~~ 312 (332)
T 2hfs_A 298 S-SDQRDAIVKGLKAK 312 (332)
T ss_dssp S-HHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHH
Confidence 5 44567888888764
No 9
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=1.6e-32 Score=253.68 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=196.8
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhh----cc--------C---------CccchHHHH-HHHHHHH
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRL----QN--------E---------GYYGGVRLV-MAICKVF 57 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~----~~--------~---------~~~~~~~~v-~~~~~~~ 57 (302)
|+|++++++++++ +.+.+.+.+....|+..+ +.... .. + ...+|.+|+ ..++..+
T Consensus 34 ~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 112 (395)
T 1kvk_A 34 NLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVAT-LQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAF 112 (395)
T ss_dssp EEEEEEEEEECSSSEEEEEETTTTEEEEEEHHH-HHTSCC----------------CHHHHHHTSSCCCSCTTHHHHHHH
T ss_pred eccEEEEEEECCCCeEEEEcCCCCceEEEEhHh-hhhhhcccccccccccccHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 6899999999865 777766654334554432 11000 00 0 011466773 1222222
Q ss_pred HHHhH-hcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCC-----CCCCC-------c---ccHhHHHH
Q 043436 58 FKYCK-DNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKV-----RHLVK-------V---EIRPNLIL 121 (302)
Q Consensus 58 ~~~~~-~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~-----~~~ls-------~---~el~~la~ 121 (302)
+..+. ..+...+..|++|.++++||.++|||||||+++|++.|+++++++ + ++ . .+|+++|.
T Consensus 113 l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~--l~~~~~~~~~~~l~~l~~~A~ 190 (395)
T 1kvk_A 113 LYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLK--DRGSIGSWPEEDLKSINKWAY 190 (395)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGG--GCCSEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCccccccc--ccccccccchhhHHHHHHHHH
Confidence 22221 112210136899999999999999999999999999999999998 7 88 6 45666789
Q ss_pred HHHH-HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCc
Q 043436 122 NAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGD 199 (302)
Q Consensus 122 ~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~ 199 (302)
.+|+ ++|.++|. |++++++||+++++ + | .+.+++.. .+ +++|++|+.+++|+++++.++......+
T Consensus 191 ~~E~~~~G~~sG~-D~~~~~~Gg~~~~~--~------~--~~~~l~~~~~~-~~vl~~~~~~~~T~~~~~~~~~~~~~~~ 258 (395)
T 1kvk_A 191 EGERVIHGNPSGV-DNSVSTWGGALRYQ--Q------G--KMSSLKRLPAL-QILLTNTKVPRSTKALVAGVRSRLIKFP 258 (395)
T ss_dssp HHHHHHHSSCCSH-HHHHHHHCSEEEES--S------S--CEEECSCCCCE-EEEEEECCCCCCHHHHHHHHHHHHHHSH
T ss_pred HhhheEecCCCCc-chHHhhhcceEEEc--C------C--CceeccCCCCc-EEEEEECCCCCchHHHHHHHHHHHHHCH
Confidence 9999 99999999 99999999998753 3 1 24555431 12 6889999999999998877765443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCC
Q 043436 200 EFIISSMKEVAQMAAEGQAAIL-------EKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGS 271 (302)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~al~-------~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGa 271 (302)
+.....++++..++.++..++. ++|++.|+++|+++|..++++ .+++|+++ +++.+++.|+|+|||||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~~----~~~~p~l~~l~~~a~~~Gaga~~sGa 334 (395)
T 1kvk_A 259 EIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNAL----GVGHASLDQLCQVTAAHGLHSKLTGA 334 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHTTCEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHcCCceeeccC
Confidence 3333345555555666655554 489999999999999888874 48899998 99999999888999999
Q ss_pred C--ceEEEEeeCCc--chHHHHHHHHHHcCCc
Q 043436 272 G--GAVIAFCPNGP--SQVELLEDACRKAGFS 299 (302)
Q Consensus 272 G--g~~~al~~~~~--~~~~~~~~~l~~~g~~ 299 (302)
| ||++++++++. +.++.+.+.|++.|+.
T Consensus 335 G~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g~~ 366 (395)
T 1kvk_A 335 GGGGCGITLLKPGLERAKVEAAKQALTGCGFD 366 (395)
T ss_dssp CSSSEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence 9 59999998521 2466788888887764
No 10
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=1.2e-32 Score=259.34 Aligned_cols=275 Identities=16% Similarity=0.206 Sum_probs=199.6
Q ss_pred CceEEEEEeeC--Cc--eeEeccCCC-Ccceecc--chh-hhhhhccCCccchHHHHHHHHHHHHHHhHhc------CCC
Q 043436 2 NFWASVKLEPS--DD--LVIKPHPVH-DLVQFQS--LHH-LMNRLQNEGYYGGVRLVMAICKVFFKYCKDN------KID 67 (302)
Q Consensus 2 d~~~~v~~~~~--~~--~~~~s~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------g~~ 67 (302)
|++++|+++|+ ++ +++.|.+.. ....|+. .+. +... ....+|.+|++++++.+.++++.. |.+
T Consensus 68 ~~~~~vav~~~~~~d~~i~i~S~~~~~~~~~~~l~~~~~~~~i~---~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~ 144 (520)
T 3v2u_C 68 DVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPLDGSYMAID---PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTP 144 (520)
T ss_dssp EEEEEEEEEECCCSSCEEEEEESSTTSCCEEEECCTTCCCCCCC---TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSC
T ss_pred ecceEEEEEeccCCCCEEEEEECCCCCCceEEEeccCccccccC---cccccHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 68999999997 44 888887643 2345554 211 1110 012468999999988777766542 232
Q ss_pred CCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecC-
Q 043436 68 LHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFY---KVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGG- 143 (302)
Q Consensus 68 ~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~---~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg- 143 (302)
..||++.|.|+||.|+|| |||++||++.|++.++ +++ +++.+++++|+.+|+++|.+||+|||+++++|+
T Consensus 145 --~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~--l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~ 218 (520)
T 3v2u_C 145 --LVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFD--ISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEE 218 (520)
T ss_dssp --CCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCC--CBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBT
T ss_pred --CCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCC--CCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCC
Confidence 369999999999999999 9999999999999998 778 999999999999999999999999999999998
Q ss_pred --eeEEeeccccccccCcccccccCCCCC--C--CEEEEEeCC---CCChH------------HHHHHHHHh--------
Q 043436 144 --LVHMDFRKEHMDELGHGIYKPMDIDLL--P--PLYLIYAEN---PSDSG------------KVHSTVRQR-------- 194 (302)
Q Consensus 144 --~~~~~~~~~~~~~~g~~~~~~l~~~~~--~--~~~l~~~~~---~~~t~------------~~~~~~~~~-------- 194 (302)
.++++|.+. + .+.+++++.+ + .++|++|+. ++.+. .+...+...
T Consensus 219 g~~l~id~~~~-l------~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~ 291 (520)
T 3v2u_C 219 DHALYVEFRPK-L------KATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSH 291 (520)
T ss_dssp TBEEEEECSSS-C------EEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCC
T ss_pred CeEEEEEcCCC-c------eeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccc
Confidence 778777541 1 2333333221 2 688888887 33211 111111000
Q ss_pred --------------------------------------------------hhcC-----------------c--------
Q 043436 195 --------------------------------------------------WLDG-----------------D-------- 199 (302)
Q Consensus 195 --------------------------------------------------~~~~-----------------~-------- 199 (302)
+... +
T Consensus 292 ~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~ 371 (520)
T 3v2u_C 292 KDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLT 371 (520)
T ss_dssp CSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTS
T ss_pred ccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcc
Confidence 0000 0
Q ss_pred ---------HHHHHHHHHHH--HHHHHHHHHHHcc-------CHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHH
Q 043436 200 ---------EFIISSMKEVA--QMAAEGQAAILEK-------NYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIAR 260 (302)
Q Consensus 200 ---------~~~~~~~~~i~--~~~~~~~~al~~~-------d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~ 260 (302)
...++..|.+. .++.++.++|+++ |++.||++|+++|.++++++ .+++|++| |+++|+
T Consensus 372 ~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~---~vS~peld~lv~~a~ 448 (520)
T 3v2u_C 372 TFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLY---ECSCIETNQICSIAL 448 (520)
T ss_dssp SSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTS---CCCCHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 01233445554 3578889999997 59999999999999999886 79999999 999999
Q ss_pred HcCC-ceeecCCC--ceEEEEee--CCcchHHHHHHHHHHc
Q 043436 261 RFGA-ASKFTGSG--GAVIAFCP--NGPSQVELLEDACRKA 296 (302)
Q Consensus 261 ~~g~-gaklsGaG--g~~~al~~--~~~~~~~~~~~~l~~~ 296 (302)
+.|+ |+|||||| ||+|+|++ . ++.++++.+.+++.
T Consensus 449 ~~Ga~GarlTGaG~GGc~iaLv~~~~-~~~~~~~~~~l~~~ 488 (520)
T 3v2u_C 449 ANGSFGSRLTGAGWGGCTIHLVPSGA-NGNVEQVRKALIEK 488 (520)
T ss_dssp HTTCSEEEECSSCSSSEEEEEEEEST-TCSHHHHHHHHHHH
T ss_pred hCCCCEEEEecCCCCceEEEEEcCCC-HHHHHHHHHHHHHH
Confidence 9999 99999999 69999993 2 56777777777553
No 11
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=3.1e-32 Score=252.01 Aligned_cols=270 Identities=16% Similarity=0.184 Sum_probs=192.8
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCc----ceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEE
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDL----VQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTL 75 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i 75 (302)
|++++|+++++++ +.+.+.+.... +.|.... .+. ....+..+|.||+++++..+ + +... .|++|
T Consensus 65 ~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~n~v~~a~~~l-~-----~~~~--~g~~i 134 (399)
T 1wuu_A 65 ELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPT-AQR-SLEPGTPRWANYVKGVIQYY-P-----AAPL--PGFSA 134 (399)
T ss_dssp EEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCC-SSC-CCCCCSSGGGHHHHHHHHHC-S-----SSCC--CEEEE
T ss_pred cccEEEEEEECCCCeEEEEECCCCCccccceEEecCc-ccc-ccccCCCCHHHHHHHHHHHh-c-----CCCC--CCeEE
Confidence 6789999998765 77777654322 2233210 000 00011245789999988665 2 3332 68999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCe---eEEeecc
Q 043436 76 SYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGL---VHMDFRK 151 (302)
Q Consensus 76 ~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~---~~~~~~~ 151 (302)
.|+++||.++|||||||+++|++.|++++++++ ++.++|+++|..+|+ ++|.+||++|++++++||. .++++.+
T Consensus 135 ~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~--l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~ 212 (399)
T 1wuu_A 135 VVVSSVPLGGGLSSSASLEVATYTFLQQLCPDS--GTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRS 212 (399)
T ss_dssp EEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCC--SCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTT
T ss_pred EEECCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCC
Confidence 999999999999999999999999999999999 999999999999999 9999999999999999994 4444322
Q ss_pred ccccccCcccccccCCCCCC-CEEEEEeCCCCChHH-HH-------HHHHHhh------hcCc------------HHHHH
Q 043436 152 EHMDELGHGIYKPMDIDLLP-PLYLIYAENPSDSGK-VH-------STVRQRW------LDGD------------EFIIS 204 (302)
Q Consensus 152 ~~~~~~g~~~~~~l~~~~~~-~~~l~~~~~~~~t~~-~~-------~~~~~~~------~~~~------------~~~~~ 204 (302)
. .+.+++++... .++|++|+.+++|.. .+ ......+ ...+ ....+
T Consensus 213 ~--------~~~~~~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r 284 (399)
T 1wuu_A 213 L--------ETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRR 284 (399)
T ss_dssp C--------CEEEEECCCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHH
T ss_pred C--------ceEEecCCCCCeEEEEEECCCccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHH
Confidence 1 24444432112 788999988877742 11 1111111 0001 11222
Q ss_pred HHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHH-cCC-ceeecCCC--ceEEE
Q 043436 205 SMKEVAQM--AAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARR-FGA-ASKFTGSG--GAVIA 277 (302)
Q Consensus 205 ~~~~i~~~--~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~-~g~-gaklsGaG--g~~~a 277 (302)
..+.+.+. +.+++++|.++|++.|+++|+++|..+++.+ .+++|+++ +++.+++ .|+ |+|||||| ||+++
T Consensus 285 ~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~---~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~ 361 (399)
T 1wuu_A 285 ARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDY---EVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVT 361 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTS---CCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEE
T ss_pred HHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEE
Confidence 33444443 7788899999999999999999987777543 47899999 9999999 699 99999999 69999
Q ss_pred EeeCCcchHHHHHHHHHHc
Q 043436 278 FCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 278 l~~~~~~~~~~~~~~l~~~ 296 (302)
|++ .+.++++.++|++.
T Consensus 362 l~~--~~~~~~~~~~l~~~ 378 (399)
T 1wuu_A 362 LLE--ASAAPHAMRHIQEH 378 (399)
T ss_dssp EEE--GGGHHHHHHHHHHH
T ss_pred EEc--cchHHHHHHHHHHH
Confidence 998 45678888888764
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-32 Score=246.26 Aligned_cols=225 Identities=20% Similarity=0.259 Sum_probs=176.8
Q ss_pred chHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHH
Q 043436 45 GGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124 (302)
Q Consensus 45 ~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E 124 (302)
+|.+++++++..+.+. . .|++|.++++||.++|||||||+++|++.|++++++++ +++++++++|..+|
T Consensus 68 ~~~~~v~~~~~~~~~~-------~--~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~--l~~~~l~~la~~~E 136 (308)
T 2x7i_A 68 DHLKSLVNRFVELNNI-------T--EPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKS--LTKEELIEKANWAE 136 (308)
T ss_dssp SCHHHHHHHHHHHTTC-------C--SCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-------C--CCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 4679999887665431 1 48999999999999999999999999999999999999 99999999999999
Q ss_pred H-HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCC-CEEEEEeCCCCChHHHHHHHHHhhhcCcHHH
Q 043436 125 K-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLP-PLYLIYAENPSDSGKVHSTVRQRWLDGDEFI 202 (302)
Q Consensus 125 ~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~ 202 (302)
+ ++|.++|. |++++.+||+++++ +. . .+.+++.+ +. .++|++++.+.+|.++++.++......+. .
T Consensus 137 ~~~~g~~sG~-d~~~~~~g~~~~~~--~g------~-~~~~~~~~-~~~~~vi~~~~~~~sT~~~~~~l~~~~~~~~~-~ 204 (308)
T 2x7i_A 137 QIAHGKPSGI-DTQTIVSGKPVWFQ--KG------H-AETLKTLS-LDGYMVVIDTGVKGSTRQAVHDVHKLCEDPQY-M 204 (308)
T ss_dssp HHHHSSCCHH-HHHHHHHTSCEEEE--TT------E-EEECSCCC-BSSEEEEEECCC--CCSCCCC--------CCH-H
T ss_pred HHHCCCCchH-HHHHhhCCceEEEE--cC------C-CceEeccC-CCceEEEEECcCCCCHHHHHHHHHHHHhcCch-H
Confidence 9 99999998 89999999988765 21 1 23444432 12 67888888888888776555443322222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc--eEEEE
Q 043436 203 ISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG--AVIAF 278 (302)
Q Consensus 203 ~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg--~~~al 278 (302)
.+ +.++.+++.++.++|.++|++.|+++|+++|..++++ .+++|+++ +++.+++.|+ +++|||||+ |++++
T Consensus 205 ~~-~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~----~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l 279 (308)
T 2x7i_A 205 SH-VKHIGKLVLRASDVIEHHKFEALADIFNECHADLKAL----TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLL 279 (308)
T ss_dssp HH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEE
T ss_pred HH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEE
Confidence 22 4555667888899999999999999999999888875 37889998 9999999999 999999995 99999
Q ss_pred eeCCcchHHHHHHHHHHcCC
Q 043436 279 CPNGPSQVELLEDACRKAGF 298 (302)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~g~ 298 (302)
+++ ++.++++.++|++.|.
T Consensus 280 ~~~-~~~~~~~~~~l~~~~~ 298 (308)
T 2x7i_A 280 AKD-LPTAKNIVKAVEKAGA 298 (308)
T ss_dssp ESS-HHHHHHHHHHHHHTTC
T ss_pred eCC-hhHHHHHHHHHHhCCC
Confidence 985 4678899999999874
No 13
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=1.2e-31 Score=240.79 Aligned_cols=264 Identities=17% Similarity=0.251 Sum_probs=191.0
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEe
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDT 79 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s 79 (302)
|+|++|+++++++ +.+.+.+.+...+|...+..+.. ..++ ++++.++..+...+...+... ..|++|.+++
T Consensus 34 ~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~i~i~~ 106 (317)
T 1kkh_A 34 DLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNIN-----PNNF-GDFKYCLCAIKNTLDYLNIEP-KTGFKINISS 106 (317)
T ss_dssp EEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGGGCC-----GGGS-GGGHHHHHHHHHHHHHTTCCC-CSCEEEEEEE
T ss_pred cCeEEEEEEECCCCeEEEEeCCCCCceEEEeccCCccC-----cccc-hHHHHHHHHHHHHHHhhcccC-CCCeEEEEec
Confidence 6789999998765 66665544333344432111100 1123 556665555433211112221 3689999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEeeccccccccC
Q 043436 80 NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELG 158 (302)
Q Consensus 80 ~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g 158 (302)
+||.++|||||||+++|++.|++++++++ ++.++++++|..+|. ++|.++| +|++++++||+++++ +.
T Consensus 107 ~iP~~~GLGsSsa~~~a~~~al~~l~~~~--l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~~~~~--~~------ 175 (317)
T 1kkh_A 107 KIPISCGLGSSASITIGTIKAVSGFYNKE--LKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGILEIK--NN------ 175 (317)
T ss_dssp CSCSSSSSCHHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSEEEES--SS------
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCeEEEc--CC------
Confidence 99999999999999999999999999999 999999999999999 8888766 599999999998752 21
Q ss_pred cccccccCCC---CC---CCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 043436 159 HGIYKPMDID---LL---PPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELM 232 (302)
Q Consensus 159 ~~~~~~l~~~---~~---~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~ 232 (302)
.+.+++.+ .+ ..+++++|+.+++|.++++.+...+.. ...+.. +...+.+++..+|++.|+++|
T Consensus 176 --~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~~~~~~~~~~~-----~~~~~~---~~~~~~~a~~~~d~~~l~~~~ 245 (317)
T 1kkh_A 176 --KFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENK-----DEIFKE---IDKVIDEALKIKNKEDFGKLM 245 (317)
T ss_dssp --CEEEECHHHHHHHHTCCEEEEEEECCCSCHHHHHHHHHTCTTH-----HHHHHH---HHHHHHHHHHCCSHHHHHHHH
T ss_pred --CceEecCCcccccccCcEEEEEECCCcCcHHHHHHHHHHhhcc-----HHHHHH---HHHHHHHHHHcCCHHHHHHHH
Confidence 12333211 11 158899999999999988876543321 122222 223355788889999999999
Q ss_pred HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCCc--eEEEEeeCCcchHHHHHHHHHHcCCc
Q 043436 233 NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSGG--AVIAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaGg--~~~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
+++|..++++ .+++|+++ +++.+++.|.+++|||||+ |+++++++ +.++++.++|++.|..
T Consensus 246 ~~~~~~~~~~----~~~~p~l~~~~~~~~~~G~ga~~sGaG~GG~v~~l~~~--~~~~~~~~~l~~~g~~ 309 (317)
T 1kkh_A 246 TKNHELLKKL----NISTPKLDRIVDIGNRFGFGAKLTGAGGGGCVIILVNE--EKEKELLKELNKEDVR 309 (317)
T ss_dssp HHHHHHHHTT----TCCCHHHHHHHHHHHHHSSEEEECSSSSSEEEEEECCG--GGHHHHHHHHHTSSCE
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHHhcCceeEEeecCCCCEEEEEech--hhHHHHHHHHHhcCCE
Confidence 9999888765 37789998 9999998887899999995 99999984 4488999999998865
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=3.8e-31 Score=234.65 Aligned_cols=207 Identities=20% Similarity=0.315 Sum_probs=167.9
Q ss_pred CceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecCeeEEee
Q 043436 71 GNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGGLVHMDF 149 (302)
Q Consensus 71 ~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~ 149 (302)
.|++|.++++||.++|||||||+++|++.|++++++++ ++.+++.++|..+|. .++.++|+ |++++.+||++++.
T Consensus 73 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~--l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~~~~~- 148 (292)
T 2oi2_A 73 ACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQAD--LPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQPIRFI- 148 (292)
T ss_dssp CCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSCEEEE-
T ss_pred CceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCceEEEE-
Confidence 58999999999999999999999999999999999999 999999999999998 78999997 99999999998763
Q ss_pred ccccccccCcccccccCCCCCC-CEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Q 043436 150 RKEHMDELGHGIYKPMDIDLLP-PLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKL 228 (302)
Q Consensus 150 ~~~~~~~~g~~~~~~l~~~~~~-~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~ 228 (302)
+. . .+.+++.+ ++ .+++++++.+++|.++++.++...... .+.++.+.+++.++.++|.++|++.|
T Consensus 149 -~~------~-~~~~~~~~-~~~~~~i~~~~~~~sT~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~al~~~d~~~l 215 (292)
T 2oi2_A 149 -KN------V-GFTELEMD-LSAYLVIADTGVYGHTREAIQVVQNKGKDA----LPFLHALGELTQQAEIAISQKDAEGL 215 (292)
T ss_dssp -TT------T-EEEECCCC-CSCEEEEEECSSCCCHHHHHHHHHHTGGGG----HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -cC------C-CceeecCC-CCCEEEEEECCCCCcHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 21 1 23444332 23 466778888999999888776533211 23456666778888999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCc--eEEEEeeCCcchHHHHHHHHHHcCCc
Q 043436 229 AELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGG--AVIAFCPNGPSQVELLEDACRKAGFS 299 (302)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg--~~~al~~~~~~~~~~~~~~l~~~g~~ 299 (302)
+++|+++|..++++ .+++|+++ +++.+++.|+ ++++||||+ |+++++++ ++.++++.++|++.|..
T Consensus 216 ~~~~~~~~~~l~~~----~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~-~~~~~~~~~~l~~~~~~ 285 (292)
T 2oi2_A 216 GQILSQAHLHLKEI----GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTN-LTHAQELAERLEEKGAV 285 (292)
T ss_dssp HHHHHHHHHHHHHT----TCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESC-HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhc----CCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecC-chHHHHHHHHHHhcCcc
Confidence 99999999877764 37889998 9999999998 999999995 99999985 46788999999998864
No 15
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.98 E-value=2.2e-30 Score=235.42 Aligned_cols=261 Identities=18% Similarity=0.236 Sum_probs=182.4
Q ss_pred CceEEEEEeeCCc--eeEeccCCCCcceeccchhhhhhhccCCccchHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEe
Q 043436 2 NFWASVKLEPSDD--LVIKPHPVHDLVQFQSLHHLMNRLQNEGYYGGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDT 79 (302)
Q Consensus 2 d~~~~v~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s 79 (302)
|++++|+++++++ +.+.+.+......| .. .+ +...|.+++++++..+.+ .+.. ..|++|.+++
T Consensus 30 ~~~~~v~v~~~~~~~i~i~~~~~~~~~~~-l~---~~-----~~~~~~~~~~~~~~~l~~----~~~~--~~g~~i~i~s 94 (350)
T 2cz9_A 30 NLYTKIEAEKHGEVILYSEHFGEERKFSL-ND---LR-----KENSWIDYVKGIFWVLKE----SDYE--VGGIKGRVSG 94 (350)
T ss_dssp EEEEEEEEEEESSEEEEETTTTEEEEECT-TC---CC-----CCSSTHHHHHHHHHHHHH----TTCC--CCEEEEEEEC
T ss_pred eceEEEEEEECCCCeEEEEECCCCccccc-cC---CC-----CCCcHHHHHHHHHHHHHh----cCCC--CCCeEEEEEC
Confidence 5788899988654 66655432211111 10 00 013467899877665543 2443 2689999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH-HcCCCCCccceeeeeecC---eeEEeecccccc
Q 043436 80 NIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK-ELGIVAGLQDRVAQVYGG---LVHMDFRKEHMD 155 (302)
Q Consensus 80 ~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg---~~~~~~~~~~~~ 155 (302)
+||.++|||||||+++|++.|++++++++ ++.++++++|..+|. .+|.++|++|++++.+|+ ++++++.+.
T Consensus 95 ~IP~g~GLGSSaA~~vA~~~al~~l~~~~--l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~--- 169 (350)
T 2cz9_A 95 NLPLGAGLSSSASFEVGILETLDKLYNLK--LDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTL--- 169 (350)
T ss_dssp SCCTTSSSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTC---
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCCC---
Confidence 99999999999999999999999999999 999999999999998 899999999999999986 444443221
Q ss_pred ccCcccccccCCC-CCCCEEEEEeCCCC--ChHHHHHHH-------HHh------hh-------cCcHHH-HHHHHHHHH
Q 043436 156 ELGHGIYKPMDID-LLPPLYLIYAENPS--DSGKVHSTV-------RQR------WL-------DGDEFI-ISSMKEVAQ 211 (302)
Q Consensus 156 ~~g~~~~~~l~~~-~~~~~~l~~~~~~~--~t~~~~~~~-------~~~------~~-------~~~~~~-~~~~~~i~~ 211 (302)
.+.+++++ .+ +++|++|+.++ +|.. +... ... ++ ..++.. .+..+.+.+
T Consensus 170 -----~~~~l~~~~~~-~~vl~~~~~~~~~~t~~-~~~r~~~~~~a~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~ 242 (350)
T 2cz9_A 170 -----DYEYIPFPKDV-SILVFYTGVRRELASSE-YAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRE 242 (350)
T ss_dssp -----CEEEEECCTTE-EEEEEECSCC----CHH-HHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHHHHHHHHHHHHH
T ss_pred -----cEEEEcCCCCc-EEEEEECCCCCccccch-HHHHHHHHHHHHHHhChhhhhhCCHHHHhhCCHHHHHHHHHHhhH
Confidence 34555432 12 68899999874 4443 2211 000 10 112211 122223332
Q ss_pred --HHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCC--ceEEEEeeCCcch
Q 043436 212 --MAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSG--GAVIAFCPNGPSQ 285 (302)
Q Consensus 212 --~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaG--g~~~al~~~~~~~ 285 (302)
.+.++..+|.++|++.|+++|+.+|..+++.+ .+++|+++ +++.+++.|+ |++||||| ||+++|+++ +.
T Consensus 243 ~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~---~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~~l~~~--~~ 317 (350)
T 2cz9_A 243 NARVLEVRDALKEGNVEEVGKILTTAHWDLAKNY---EVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALVDK--ED 317 (350)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEG--GG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEEEEEch--hh
Confidence 37788899999999999999999998777643 46889998 9999999999 99999999 699999984 34
Q ss_pred HHHHHHHHH
Q 043436 286 VELLEDACR 294 (302)
Q Consensus 286 ~~~~~~~l~ 294 (302)
++++.++++
T Consensus 318 ~~~~~~~l~ 326 (350)
T 2cz9_A 318 AETIGEEIL 326 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455554443
No 16
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.96 E-value=1.9e-29 Score=224.88 Aligned_cols=256 Identities=18% Similarity=0.153 Sum_probs=187.8
Q ss_pred CceEEEEEeeCCc-----eeEeccCCCCcceeccchhhhhhhcc---CC-ccchHHHHHHHHHHHHHHhHhcCCCCCCCc
Q 043436 2 NFWASVKLEPSDD-----LVIKPHPVHDLVQFQSLHHLMNRLQN---EG-YYGGVRLVMAICKVFFKYCKDNKIDLHKGN 72 (302)
Q Consensus 2 d~~~~v~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~g 72 (302)
|++++|.-++.|. .++.+.++.|.++++..+........ .. ..+..|++.++++.+.+++ |. ..|
T Consensus 15 NL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~i~~~g~~~~~~p~~~~Nlv~~A~~~l~~~~---g~---~~~ 88 (306)
T 3pyf_A 15 NLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLSLELVGEGADQLPTDERNLAWQAAELMAEHV---GR---APD 88 (306)
T ss_dssp EEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCEEEEESTTGGGSCCSTTSHHHHHHHHHHHHT---TC---CCC
T ss_pred EeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCEEEEeCCCccCCCCCCccHHHHHHHHHHHHh---CC---CCC
Confidence 5566666665543 56777788888877654321111111 11 1235699999999988754 33 258
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHHcCCCCCccceeeeeecCeeEEeeccc
Q 043436 73 FTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKELGIVAGLQDRVAQVYGGLVHMDFRKE 152 (302)
Q Consensus 73 ~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 152 (302)
++|+++++||.++|||||||+++|++.|++++++++ ++.+++.++|.++| .|++++++||+++....
T Consensus 89 ~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~--l~~~~l~~la~~~~---------~Dv~~~~~Gg~~~~~g~-- 155 (306)
T 3pyf_A 89 VSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELN--VPRRDLRMLAARLG---------SDVPFALHGGTALGTGR-- 155 (306)
T ss_dssp EEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHC---------TTHHHHHHBSEEEECSS--
T ss_pred eEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhC---------CCCceeecCceEEEEee--
Confidence 999999999999999999999999999999999999 99999999999884 39999999999875421
Q ss_pred cccccCcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 043436 153 HMDELGHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISSMKEVAQMAAEGQAAILEKNYSKLAEL 231 (302)
Q Consensus 153 ~~~~~g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~ 231 (302)
|. .+.+++.. .+ +++|++|+.+.+|.++++.+.......+ . ... ..+..+..+|.++|++.+++.
T Consensus 156 -----ge-~~~~l~~~~~~-~~vl~~P~~~vsT~~a~~~l~~~~~~~~--~-~~~----~~~~~~~~al~~~d~~~l~~~ 221 (306)
T 3pyf_A 156 -----GE-ELATVLSRNTF-HWVLAFADSGLLTSAVYNELDRLREVGD--P-PRL----GEPGPVLAALAAGDPDQLAPL 221 (306)
T ss_dssp -----SS-CCEEECCSSCE-EEEEEECSSCCCHHHHHHHHHHHHHHSC--C-CCC----CCHHHHHHHHHHTCHHHHGGG
T ss_pred -----CC-eEEEccCCCCc-EEEEEECCCCCcHHHHHHhhhhhccccc--c-ccc----cCHHHHHHHHHhCCHHHHHHH
Confidence 11 34555432 11 6888999999999998887654321100 0 000 124567789999999999998
Q ss_pred HHHH-HHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCC
Q 043436 232 MNHN-FDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGF 298 (302)
Q Consensus 232 ~~~~-~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~ 298 (302)
|.+. +..... ..|+++ +++.+++.|+ +++|||+|+|+|+++++ ++.++++.+.|++.|.
T Consensus 222 l~n~le~~~~~-------~~P~l~~i~~~~~~~Ga~ga~mSGsGptvfal~~~-~~~a~~~~~~l~~~g~ 283 (306)
T 3pyf_A 222 LGNEMQAAAVS-------LDPALARALRAGVEAGALAGIVSGSGPTCAFLCTS-ASSAIDVGAQLSGAGV 283 (306)
T ss_dssp CEETTHHHHHH-------HCTHHHHHHHHHHHTTCSEEEECTTSSEEEEEESS-HHHHHHHHHHHHHTTS
T ss_pred hccchHHHHHH-------hChHHHHHHHHHHhcCCCEEEEcCcchhheEEeCC-HHHHHHHHHHHHhcCC
Confidence 8432 233221 258887 9999999999 99999999999999986 6678999999999876
No 17
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.96 E-value=1.8e-28 Score=217.88 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
+.|++.++++.+.+++ |. +.|++|.++++||.++|||||||+++|++.|++++++++ ++.++++++|.++|.
T Consensus 56 ~~n~v~~a~~~~~~~~---g~---~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~--l~~~~l~~la~~~e~ 127 (296)
T 1h72_C 56 DKNVAGIVAKKMIDDF---NI---GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLN--LDKLKLVDYASYGEL 127 (296)
T ss_dssp TTSHHHHHHHHHHHHT---TC---CCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHh---CC---CCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHhcC
Confidence 5799999999887753 43 258999999999999999999999999999999999999 999999999999999
Q ss_pred -HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 126 -ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 126 -~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
.+|.++ .+|++++++||++++. +.. ...+.+++++ .+ +++|++|+.+.+|.++++.+... .+ ..
T Consensus 128 ~~~g~~~-~ddv~~~~~gg~~~~~-~~~------~~~~~~~~~~~~~-~~vl~~p~~~~~T~~~~~~l~~~---~~--~~ 193 (296)
T 1h72_C 128 ASSGAKH-ADNVAPAIFGGFTMVT-NYE------PLEVLHIPIDFKL-DILIAIPNISINTKEAREILPKA---VG--LK 193 (296)
T ss_dssp HHHSSCC-CTTHHHHHHCSEEEEE-ETT------TTEEEEECCCSCC-CEEEECCSSCCCHHHHHHTSCSC---CC--HH
T ss_pred cccCCCC-ccchHHHHhCCEEEEE-eCC------ceEEEEEcCCCCe-EEEEEeCCCCccHHHHHHhccCc---Cc--HH
Confidence 777665 4688889999999874 221 1124555432 22 78999999999998876643211 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHH--HHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEe
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELM--NHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFC 279 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~--~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~ 279 (302)
..+..+. .+.++.++|.++|++.|+++| +..|+..+ ...+|+++ +++.+++. + |++|||+|+|+++|+
T Consensus 194 ~~~~~~~-~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~------~~~~p~l~~~~~~~~~~-a~ga~~sGsG~~v~~l~ 265 (296)
T 1h72_C 194 DLVNNVG-KACGMVYALYNKDKSLFGRYMMSDKVIEPVR------GKLIPNYFKIKEEVKDK-VYGITISGSGPSIIAFP 265 (296)
T ss_dssp HHHHHHH-HHHHHHHHHHTTCHHHHHHHHTTCCSSHHHH------HTTSTTHHHHHHHHTTT-EEEEEECTTSSCEEEEE
T ss_pred HHHHHHH-HHHHHHHHHHcCCHHHHHHHHhcCcchhhhh------hccCccHHHHHHHHHhh-cceEEEecCChheEEEe
Confidence 2222222 355788999999999999999 44433333 25678998 99999988 7 999999999999999
Q ss_pred eCCcchHHHHHHHHHHcCC
Q 043436 280 PNGPSQVELLEDACRKAGF 298 (302)
Q Consensus 280 ~~~~~~~~~~~~~l~~~g~ 298 (302)
+ ++.++++.++|++.+.
T Consensus 266 ~--~~~~~~~~~~l~~~~~ 282 (296)
T 1h72_C 266 K--EEFIDEVENILRDYYE 282 (296)
T ss_dssp C--GGGHHHHHHHHHHHCS
T ss_pred c--HHHHHHHHHHHHHhcc
Confidence 4 6788899999987654
No 18
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.96 E-value=8.9e-28 Score=213.36 Aligned_cols=215 Identities=16% Similarity=0.188 Sum_probs=155.6
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
..|++.+++..+.+ . ..|++|.++++||.++|||||||+++|++.|++++++++ ++.++++++|..+|.
T Consensus 54 ~~nlv~~a~~~~~~------~---~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~--l~~~el~~la~~~eg 122 (298)
T 3hul_A 54 ETNVIIETALNLAP------N---LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELN--LSKEEKVRIAAEIEG 122 (298)
T ss_dssp TTSHHHHHHHHHCT------T---CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhc------c---CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHhcC
Confidence 34788887766643 1 368999999999999999999999999999999999999 999999999999983
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFIISS 205 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 205 (302)
+.+|++++++||+++.....+.+ .+.+++++.+ ++++++|+.+.+|.++++.+..... ..+.
T Consensus 123 ------~~ddv~~~~~GG~~~~~g~ge~~------~~~~~~~p~~-~~vlv~p~~~~sT~~a~~~l~~~~~-----~~~~ 184 (298)
T 3hul_A 123 ------HPDNVAPAVLGNWVVGAKLDGED------FYVRHLFPDC-ALIAFIPKAELLTSESRGVLPDTLP-----FKEA 184 (298)
T ss_dssp ------CSTTHHHHHHCSEEEEEEETTEE------EEEEECCC-C-EEEEEECCCCCC--------CCEEE-----HHHH
T ss_pred ------CcccCcccccCCEEEEEeCCCcE------EEEEcCCCCe-EEEEEECCCCCCcHHHHHHHhhhcc-----HHHH
Confidence 55789999999998743222111 1234443222 6889999998999887765432211 0112
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHH--HHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeC
Q 043436 206 MKEVAQMAAEGQAAILEKNYSKLAELMNHN--FDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPN 281 (302)
Q Consensus 206 ~~~i~~~~~~~~~al~~~d~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~ 281 (302)
...+ ..+..+..+|.++|++.++++|+.+ |+..+ ....|+++ +++.+++.|+ +++|||||||++++++
T Consensus 185 ~~~~-~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~------~~~~p~l~~l~~~~~~~Ga~ga~~SGsGptv~al~~- 256 (298)
T 3hul_A 185 VQAS-SIANVMIAAILRNDMTLAGEMMERDLWHEKYR------SQLVPHLAQIRDVAKNQGAYAACLSGAGPTVLVFAP- 256 (298)
T ss_dssp HHHH-HHHHHHHHHHTTTCHHHHHHHHTCCCC-----------CTTGGGHHHHHHHHHTTTCCEEEECTTSSCEEEEEC-
T ss_pred HHHH-HHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHH------HhhCchHHHHHHHHHHCCCEEEEEeccchheEEEEC-
Confidence 2222 2356788999999999999999732 32222 12358888 9999999999 9999999999999997
Q ss_pred CcchHHHHHHHHHHcCC
Q 043436 282 GPSQVELLEDACRKAGF 298 (302)
Q Consensus 282 ~~~~~~~~~~~l~~~g~ 298 (302)
++.++++.++|++.|.
T Consensus 257 -~~~a~~v~~~l~~~~~ 272 (298)
T 3hul_A 257 -RNLANKLQTSLQTLEI 272 (298)
T ss_dssp -GGGHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHHHhcCC
Confidence 6788999999998764
No 19
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.93 E-value=5.1e-26 Score=199.64 Aligned_cols=197 Identities=19% Similarity=0.208 Sum_probs=149.7
Q ss_pred chHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHH
Q 043436 45 GGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124 (302)
Q Consensus 45 ~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E 124 (302)
++.|++.++++.+.+++ |. ..|++|.++++||.++|||||||+++|++.|++++++++ ++.+++.++|.++|
T Consensus 60 ~~~nlv~~a~~~~~~~~---g~---~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~--l~~~el~~la~~~e 131 (271)
T 2v8p_A 60 QEENLVYKGLREFERIT---GI---EINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSP--LSEEELRELVGSIS 131 (271)
T ss_dssp TTTCHHHHHHHHHHHHH---CC---CCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCC--SCHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHh---CC---CCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHhC
Confidence 46799999999887754 43 258999999999999999999999999999999999999 99999999999984
Q ss_pred HHcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCC-CCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDID-LLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 125 ~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
. |++++++||+++... . |. .+.+++.+ .+ ++++++|+.+.+|.++++.+.... .
T Consensus 132 --------~-dv~~~~~gg~~~~~g-~------g~-~~~~l~~~~~~-~~vl~~p~~~~sT~~~~~~~~~~~--~----- 186 (271)
T 2v8p_A 132 --------A-DAPFFLLGKSAIGRG-K------GE-VLEPVETEISG-KITLVIPQVSSSTGRVYSSLREEH--F----- 186 (271)
T ss_dssp --------T-TTGGGGTCSEEEEET-T------TT-EEEECCCCCCS-EEEEEECSSCCCHHHHHHTCCTTS--C-----
T ss_pred --------C-CHHHHhcCCeEEEEE-c------CC-EEEEccCCCCc-EEEEEeCCCCCCHHHHHHhccccc--C-----
Confidence 2 999999999998642 1 11 24455432 22 688899999999988766432210 0
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHhhcCCCCCCCccHH-HHHHHHHcCCcee-ecCCCceEEEEee
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNH-NFDLRRRMFGDDVLGALNIE-MVEIARRFGAASK-FTGSGGAVIAFCP 280 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gak-lsGaGg~~~al~~ 280 (302)
..+..+ .+|.++|++.++++|++ -+.... ..+|+++ +++.+++.|+ ++ |||+|||++++++
T Consensus 187 -------~~~~~~-~al~~~d~~~~~~~~~n~l~~~~~-------~~~p~l~~~~~~~~~~Ga-a~~mSGsG~~v~~l~~ 250 (271)
T 2v8p_A 187 -------VTPEYA-EEKIQRIISGEVEEIENVLGDIAR-------ELYPEINEVYRFVEYLGF-KPFVSGSGSTVYFFGG 250 (271)
T ss_dssp -------CCHHHH-HHHHHHHHTTCGGGCCBHHHHHHH-------HHCHHHHHHHHHHHHTTC-CCEECTTSSCEEESSC
T ss_pred -------cchhHH-HHhhcCCHHHHHHHHhCChhhHhH-------HhChHHHHHHHHHHhCCC-ccCccccCcCeEEEeC
Confidence 112234 78888999888887732 122211 2358888 9999999998 99 9999999999998
Q ss_pred CCcchHHHHHH
Q 043436 281 NGPSQVELLED 291 (302)
Q Consensus 281 ~~~~~~~~~~~ 291 (302)
+ ++.++++.+
T Consensus 251 ~-~~~a~~~~~ 260 (271)
T 2v8p_A 251 A-SEELKKAAK 260 (271)
T ss_dssp C-CHHHHHHHH
T ss_pred C-HHHHHHHHh
Confidence 5 556666665
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.93 E-value=1.3e-24 Score=195.75 Aligned_cols=224 Identities=12% Similarity=0.124 Sum_probs=158.2
Q ss_pred chHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHH
Q 043436 45 GGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124 (302)
Q Consensus 45 ~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E 124 (302)
++.|++.+++..+.+.+ +. ..|++|.++++||.++|||||||+++|++.|++++++++ ++.+++.++|.++|
T Consensus 73 ~~~n~v~~~~~~~~~~~---~~---~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~--l~~~el~~la~~~~ 144 (332)
T 3qt5_A 73 KEKEKIQNYMNIVRDLA---GN---RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLN--LSDTDLSRLARRGS 144 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---TC---CCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhc---CC---CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHhc
Confidence 35799999998888764 33 257999999999999999999999999999999999999 99999999999873
Q ss_pred HHcCCCCCccceeeeeecCeeEEeeccccccccCcc-cccccCCC-CCC--CEEEEEeCCC---CChHHHHHHHHHhhhc
Q 043436 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHG-IYKPMDID-LLP--PLYLIYAENP---SDSGKVHSTVRQRWLD 197 (302)
Q Consensus 125 ~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~-~~~~l~~~-~~~--~~~l~~~~~~---~~t~~~~~~~~~~~~~ 197 (302)
| |.++++|||++.+....+. .. ...+++.. ..| +++++.++.. .++..++..... .
T Consensus 145 -------g--~~~~~~~GG~~~~~~g~~~-----~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~~---~ 207 (332)
T 3qt5_A 145 -------G--SASRSIFGGFAEWEKGHDD-----LTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRD---T 207 (332)
T ss_dssp -------G--GGGGGGSCSEEEEECCSST-----TTCEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHHH---H
T ss_pred -------C--CchhhhcCCeEEEecCCCC-----ccceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhhh---c
Confidence 2 7888999999987522111 00 11333311 112 5677777653 344555544311 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc-C-CCC--CCCccHH-HHHHH---HHcCC-ceee
Q 043436 198 GDEFIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMF-G-DDV--LGALNIE-MVEIA---RRFGA-ASKF 268 (302)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~-~-~~~--~~~~~l~-l~~~a---~~~g~-gakl 268 (302)
.+ ...+....+.+.+..++.||.++|++.|+++|+.++..+.+.+ . .+. .-.|+++ +++.+ ++.|+ ++.+
T Consensus 208 s~-~~~~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~ 286 (332)
T 3qt5_A 208 SR-FYQYWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFT 286 (332)
T ss_dssp CT-THHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred Ch-hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEE
Confidence 11 1233444555678889999999999999999985533333222 0 011 1236665 76666 47898 9999
Q ss_pred cCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 269 TGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 269 sGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
||||||+++|++ +++++++.++|++.
T Consensus 287 SGaGPtv~~l~~--~~~a~~v~~~l~~~ 312 (332)
T 3qt5_A 287 MDAGPNVKVLVE--KKNKQAVMEQFLKV 312 (332)
T ss_dssp CCSSSCEEEEEE--HHHHHHHHHHHHTT
T ss_pred eCCCCcEEEEEC--HHHHHHHHHHHHHh
Confidence 999999999998 45788999998765
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.93 E-value=1.5e-25 Score=197.16 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 46 GVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 46 ~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
..|++.++++.+.+++ |. ..|++|+++++||.++|||||||+++|++.|++++++++ + ++.++|..+|
T Consensus 56 ~~n~v~~a~~~~~~~~---g~---~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~--l---~l~~la~~~g- 123 (275)
T 1uek_A 56 RENLAYRAASLYLEAA---GQ---PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAE--V---DLFALARTLG- 123 (275)
T ss_dssp GGSHHHHHHHHHHHHT---TC---CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSC--C---CHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHh---CC---CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCC--h---HHHHHHHHhC-
Confidence 4589999998887753 33 358999999999999999999999999999999999998 8 8999998873
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHh-hhcCcHHHHH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQR-WLDGDEFIIS 204 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~ 204 (302)
. |++++++||+++..... . .+.+++.+.+ ++++++|+.+.+|+++++.+... ....+.
T Consensus 124 -------~-dv~~~~~Gg~~~~~g~g-------~-~~~~l~~~~~-~~vl~~p~~~~sT~~~~~~~~~~~~~~~~~---- 182 (275)
T 1uek_A 124 -------A-DVPFFLLGRGAEARGVG-------E-RLKPLALPPV-PAVVFFPGLRVPTPLVYRAVRPEDFGPDLP---- 182 (275)
T ss_dssp -------T-THHHHHHCSEEEEETTT-------T-EEEEECCCCE-EEEEEECCCCCCHHHHHHTCCGGGCCCCCC----
T ss_pred -------C-ChHHHhcCCeEEEEccC-------c-eeEEccCCCc-EEEEEeCCCCCchHHHHHhCchhhcccCCC----
Confidence 3 99999999999864221 1 3455542112 68889999999999887654321 101111
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCC-ceeecCCCceEEEEeeCC
Q 043436 205 SMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNG 282 (302)
Q Consensus 205 ~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~ 282 (302)
+..+..+|.++ ++. +.|+..+..+. ..+|+++ +++.+++.|+ +++|||+|||+++++++
T Consensus 183 --------~~~~~~al~~~-~~~--~~~n~l~~~~~-------~~~p~l~~l~~~~~~~Ga~ga~~SGsG~~v~~l~~~- 243 (275)
T 1uek_A 183 --------VEAILEALARG-EEP--PYWNSLEGPAF-------RLFPELKEVRGRMRALGLRGVLMSGSGSAFFGLAEG- 243 (275)
T ss_dssp --------HHHHHHHHHHT-CCC--SCCBTTHHHHH-------HHCTHHHHHHHHHHHTTCEEEEECTTSSCEEEECSS-
T ss_pred --------hHHHHHHHHhc-ccc--ccccchHHHHH-------HhChHHHHHHHHHHhCCCCEEEEeccccCeEEEeCC-
Confidence 22344566555 332 23322222221 1258888 9999999999 99999999999999985
Q ss_pred cchHHHHHHHHHHcC
Q 043436 283 PSQVELLEDACRKAG 297 (302)
Q Consensus 283 ~~~~~~~~~~l~~~g 297 (302)
++.++++.++|++.+
T Consensus 244 ~~~~~~~~~~l~~~~ 258 (275)
T 1uek_A 244 PDHARRAAEALRAWG 258 (275)
T ss_dssp HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhhhcc
Confidence 556888999988755
No 22
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.91 E-value=3.1e-23 Score=185.93 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=150.0
Q ss_pred chHHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHH
Q 043436 45 GGVRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAE 124 (302)
Q Consensus 45 ~~~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E 124 (302)
+|.|+++++++.+.++ + . .|++|.++++||.++|||||||+++|++.|++++++++ ++.++|+++|.+.+
T Consensus 73 ~~~n~v~~~~~~~~~~----~---~-~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~--ls~~el~~la~~~~ 142 (317)
T 2gs8_A 73 EEHTKISAIIDQFRQP----G---Q-AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQ--LDQKALAQKAKFAS 142 (317)
T ss_dssp HHHHHHHHHHTTTCCT----T---C-CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh----c---C-CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHhhc
Confidence 4568888877665432 1 1 57999999999999999999999999999999999999 99999999998764
Q ss_pred HHcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEE--eCC-CCChHHHHHHHHHhhhcCcHH
Q 043436 125 KELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIY--AEN-PSDSGKVHSTVRQRWLDGDEF 201 (302)
Q Consensus 125 ~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~--~~~-~~~t~~~~~~~~~~~~~~~~~ 201 (302)
++++++++||++.+..+.. .....+++. .+ .+++++ ++. ..+|.+..+.+.. ..+.
T Consensus 143 ---------G~~~~~~~GG~~~~~~~~~------~~~~~~~~~-~~-~~~v~i~~~~~~~~~tt~~~~~~~~---~~~~- 201 (317)
T 2gs8_A 143 ---------GSSSRSFFGPVAAWDKDSG------AIYKVETDL-KM-AMIMLVLNAAKKPISSREGMKLCRD---TSTT- 201 (317)
T ss_dssp ---------GGGGGGGSCSEEEECTTTC------CEEECCCCC-CE-EEEEEECCCSSCCSCHHHHHHHHHH---HCTT-
T ss_pred ---------chhHhhhcCChheEeeCCC------ceeEEEccc-cc-cEEEEEEECCCcCcccHHHHHHHhh---cCHH-
Confidence 2567889999998653211 001233321 12 444444 323 3345555443321 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCC--CCC--CCccHH-HHH---HHHHcCC-ceeecCCC
Q 043436 202 IISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGD--DVL--GALNIE-MVE---IARRFGA-ASKFTGSG 272 (302)
Q Consensus 202 ~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~--~~~--~~~~l~-l~~---~a~~~g~-gaklsGaG 272 (302)
..+.......++..++.||.++|++.|+++|+++|..+++++-. +.+ -.|... +++ .+++.|+ ++.+||||
T Consensus 202 ~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG 281 (317)
T 2gs8_A 202 FDQWVEQSAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG 281 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC
Confidence 12223334577888999999999999999999887666664410 011 122233 443 4455798 89999999
Q ss_pred ceEEEEeeCCcchHHHHHHHHHH
Q 043436 273 GAVIAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 273 g~~~al~~~~~~~~~~~~~~l~~ 295 (302)
||+++|++ ++..+++.+.|++
T Consensus 282 ptv~~l~~--~~~~~~v~~~l~~ 302 (317)
T 2gs8_A 282 PNVKVLCL--EKDLAQLAERLGK 302 (317)
T ss_dssp SCEEEEEE--GGGHHHHHHHHHT
T ss_pred CeEEEEEc--HHHHHHHHHHHhc
Confidence 99999998 4567889888877
No 23
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.91 E-value=1.9e-24 Score=190.67 Aligned_cols=197 Identities=16% Similarity=0.185 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHhHhc---CCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHH
Q 043436 47 VRLVMAICKVFFKYCKDN---KIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNA 123 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~---g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~ 123 (302)
.|++.++++.+.+++.+. |. ..|++|.++++||.++|||||||+++|++.|++++++++ ++.++++++|..+
T Consensus 64 ~nlv~~a~~~~~~~~~~~~~~g~---~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~--l~~~~l~~la~~~ 138 (283)
T 2ww4_A 64 DNLIVRAARLLMKTAADSGRLPT---GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCG--LSMDELAEMGLTL 138 (283)
T ss_dssp GSHHHHHHHHHHHHHHHTTCSCT---TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhhhcccCC---CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHh
Confidence 599999999887754210 33 368999999999999999999999999999999999999 9999999999877
Q ss_pred HHHcCCCCCccceeeeeecCeeEEeeccccccccCcccccccCCCCCCCEEEEEeCCCCChHHHHHHHHHhhhcCcHHHH
Q 043436 124 EKELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMDIDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDEFII 203 (302)
Q Consensus 124 E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 203 (302)
| . |++++++||+++...... .+.+++++.+ ++++++|+.+.+|.++++... ...... .
T Consensus 139 e--------~-dv~~~~~gg~~~~~g~g~--------~~~~l~~~~~-~~vl~~p~~~~sT~~~~~~~~--~~~~~~--~ 196 (283)
T 2ww4_A 139 G--------A-DVPVFVRGHAAFAEGVGE--------ILTPVDPPEK-WYLVAHPGVSIPTPVIFKDPE--LPRNTP--K 196 (283)
T ss_dssp C--------T-THHHHHHTBCEEEETTTT--------EEEECCCCCC-EEEEECCSCCCCHHHHHTCTT--SCCCCC--C
T ss_pred C--------C-CHHHhhcCCeEEEEecCc--------cceEcCCCCc-EEEEEeCCCCCchHHHHhccc--ccccch--H
Confidence 4 2 999999999987542211 2445543322 688899999999998876521 111100 0
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcCCCCCCCccHH-HHHHHHHcCCceeecCCCceEEEEeeCC
Q 043436 204 SSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFGDDVLGALNIE-MVEIARRFGAASKFTGSGGAVIAFCPNG 282 (302)
Q Consensus 204 ~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-l~~~a~~~g~gaklsGaGg~~~al~~~~ 282 (302)
..+ .+|.++++ +++.+..+. ...|+++ +++.+++.| +++|||||||+++++++
T Consensus 197 ~~l-----------~~l~~~~~------~nd~~~~~~-------~~~p~l~~i~~~~~~~G-~a~~SGsG~tvf~l~~~- 250 (283)
T 2ww4_A 197 RSI-----------ETLLKCEF------SNDCEVIAR-------KRFREVDAVLSWLLEYA-PSRLTGTGACVFAEFDT- 250 (283)
T ss_dssp CCH-----------HHHHTSCC------CBTTHHHHH-------HHCHHHHHHHHHHHTTS-CEEECTTSSCEEEEESS-
T ss_pred HHH-----------HHHHhhhh------cCchHHHHH-------hcChHHHHHHHHHHHcC-CceECCcccceEEEeCC-
Confidence 001 12333331 222222222 2247887 889999888 89999999999999985
Q ss_pred cchHHHHHHHHHHc
Q 043436 283 PSQVELLEDACRKA 296 (302)
Q Consensus 283 ~~~~~~~~~~l~~~ 296 (302)
++.++++.++|++.
T Consensus 251 ~~~a~~~~~~l~~~ 264 (283)
T 2ww4_A 251 ESEARQVLEQAPEW 264 (283)
T ss_dssp HHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHhhhh
Confidence 55677888777543
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.90 E-value=7.4e-22 Score=175.67 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=144.0
Q ss_pred HHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHH----HHHHHHhCCCCCC-CcccHhHHHHHHHH
Q 043436 51 MAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAAL----DCLLDFYKVRHLV-KVEIRPNLILNAEK 125 (302)
Q Consensus 51 ~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~----~al~~~~~~~~~l-s~~el~~la~~~E~ 125 (302)
...++.+++.++ . ..|++|.++++||.++|||||||.+||++ .|++++++++ + |.+|+.++|+..
T Consensus 77 ~~~i~~~l~~~~---~---~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~--l~s~~eL~~lA~~g-- 146 (323)
T 3lto_A 77 IDHLVRLKEYFG---Y---VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKP--LPSIDEQAQLSRLG-- 146 (323)
T ss_dssp HHHHHHHHHHHT---C---CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCC--CCCHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhC---C---CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHh--
Confidence 345556666553 2 36899999999999999999999999999 9999999999 9 999999999643
Q ss_pred HcCCCCCccceeeeeecCeeEEeeccccccccCcccccccC--CCCCCCEEEEE-eC--CCCChHHHHHHHHHhhhcCcH
Q 043436 126 ELGIVAGLQDRVAQVYGGLVHMDFRKEHMDELGHGIYKPMD--IDLLPPLYLIY-AE--NPSDSGKVHSTVRQRWLDGDE 200 (302)
Q Consensus 126 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~g~~~~~~l~--~~~~~~~~l~~-~~--~~~~t~~~~~~~~~~~~~~~~ 200 (302)
.+|++.|+|||++.+.... ..++. .+.+ +++++. +. .+.+|.+..+.+. ..+
T Consensus 147 -------sGsaa~si~GG~v~~~~g~----------~~~l~~~~~~l-~~~v~vi~~~~~~vsT~~~~~~l~----~~~- 203 (323)
T 3lto_A 147 -------SGSSCRSFYAPWALWTGDK----------VSAIDLPYKDL-LHQVIVISSQEKEIPSRVAHKLVK----TSP- 203 (323)
T ss_dssp -------CGGGGGGGSCSEEEEETTE----------EEECCCSCCSC-EEEEEECCCCTTCCCHHHHHHHGG----GST-
T ss_pred -------CCCcchhhhCCEEEEecCc----------EEEccCCCCCC-eEEEEEECCCCCCCCCHHHHhhcc----cCh-
Confidence 3478999999999764110 11221 1223 344433 33 2457877766531 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc----CCCCCCCccHH-HHHHH---H-HcCC-ceeecC
Q 043436 201 FIISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMF----GDDVLGALNIE-MVEIA---R-RFGA-ASKFTG 270 (302)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~----~~~~~~~~~l~-l~~~a---~-~~g~-gaklsG 270 (302)
.....+......+..++.||.++|++.|+++|..+...+...+ ++...-.|... +++.+ + +.|+ ++.++|
T Consensus 204 ~~~~~~~~~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsg 283 (323)
T 3lto_A 204 FYETRSERAEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMD 283 (323)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECC
T ss_pred hHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1122333345678889999999999999998765543333211 11112234443 44444 4 4688 899999
Q ss_pred CCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 271 SGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 271 aGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
||++++++++ +++.+++.+.+++.
T Consensus 284 AGPnv~~l~~--~~~~~~v~~~l~~~ 307 (323)
T 3lto_A 284 AGPNVHLLYR--SDQTDLARQFKSDH 307 (323)
T ss_dssp SSSCEEEEEC--GGGHHHHHHHHHHH
T ss_pred CCCCeEEEEe--cccHHHHHHHHHHH
Confidence 9999999998 56788888888765
No 25
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.89 E-value=2.5e-21 Score=179.23 Aligned_cols=228 Identities=11% Similarity=0.125 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHhHh---cCCCCC---CCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHH
Q 043436 47 VRLVMAICKVFFKYCKD---NKIDLH---KGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLI 120 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~---~g~~~~---~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la 120 (302)
.++++++++.+.+.+.. .+..++ ..|++|.++++||.++|||||||+++|++.|++++++++ ++.+||+++|
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~--Ls~~eLa~lA 169 (416)
T 1fi4_A 92 NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLP--QSTSEISRIA 169 (416)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCC--SCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHH
Confidence 47888888888776532 000111 358999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHcCCCCCccceeeeeecCeeEEeecc--ccccccCcccccccCC-CCCC--CEEEEEeCC---CCChHHHHHHHH
Q 043436 121 LNAEKELGIVAGLQDRVAQVYGGLVHMDFRK--EHMDELGHGIYKPMDI-DLLP--PLYLIYAEN---PSDSGKVHSTVR 192 (302)
Q Consensus 121 ~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~--~~~~~~g~~~~~~l~~-~~~~--~~~l~~~~~---~~~t~~~~~~~~ 192 (302)
...+ +|+++++|||++.+.... +.. .....+++. +.+| .++++.++. ..++....+...
T Consensus 170 ~~g~---------Gs~~~sl~GG~v~~~~G~~~~~~----~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~ 236 (416)
T 1fi4_A 170 RKGS---------GSACRSLFGGYVAWEMGKAEDGH----DSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTV 236 (416)
T ss_dssp HHHH---------GGGGGGGSSSEEEEECCSCTTCT----TCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHH
T ss_pred hccC---------CchheEeeCCcEEEecCCcCCCC----CceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHh
Confidence 8763 367889999999865321 100 001223321 1123 333444432 234444444332
Q ss_pred HhhhcCcHHHHHHHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhcC--CCC--CCCccHH-HHHHH---HH-c
Q 043436 193 QRWLDGDEFIISSMKE-VAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMFG--DDV--LGALNIE-MVEIA---RR-F 262 (302)
Q Consensus 193 ~~~~~~~~~~~~~~~~-i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~~--~~~--~~~~~l~-l~~~a---~~-~ 262 (302)
. ..+. ....... ....+..++.||.++|++.|+++|++++..+.+++- .+. .-.|... +++.+ +. .
T Consensus 237 ~---~~~~-~~~~~~~i~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~ 312 (416)
T 1fi4_A 237 A---TSEL-FKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFY 312 (416)
T ss_dssp H---HCSH-HHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred h---cCHh-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhc
Confidence 1 1111 1233333 346778899999999999999999877655554320 011 1123334 55544 44 4
Q ss_pred C-C-ceeecCCCceEEEEeeCCcchHHHHHHHHHH
Q 043436 263 G-A-ASKFTGSGGAVIAFCPNGPSQVELLEDACRK 295 (302)
Q Consensus 263 g-~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~ 295 (302)
| + ++.+|||||++++|+++ +..+++.++|++
T Consensus 313 Ga~~~a~~SGaGPtv~al~~~--~~~~~v~~~l~~ 345 (416)
T 1fi4_A 313 GETIVAYTFDAGPNAVLYYLA--ENESKLFAFIYK 345 (416)
T ss_dssp TSCCEEEEECSSSCEEEEEEG--GGHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEECH--HHHHHHHHHHHH
Confidence 8 6 67899999999999983 455666666653
No 26
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.85 E-value=1e-19 Score=166.79 Aligned_cols=223 Identities=13% Similarity=0.145 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHHH
Q 043436 47 VRLVMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEKE 126 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~~ 126 (302)
.+++..++..+.+++ +...+..+++|.++++||.++|||||||.++|++.|++++++++ +++.++|...
T Consensus 75 ~~~v~~~~~~~~~~~---~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~-----~eL~~lA~~g--- 143 (380)
T 2hke_A 75 TPRVQSMLLHLRSTC---PEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST-----TNVSMLARLG--- 143 (380)
T ss_dssp CHHHHHHHHHHHTSS---CHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS-----SCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHh---cccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH-----HHHHHHHhhc---
Confidence 478888777766532 22001257999999999999999999999999999999999853 7899999764
Q ss_pred cCCCCCccceeeeeecCeeEEeecc--ccccccCcccccccCC-CCCC--CEEEEEeC---CCCChHHHHHHHHHhhhcC
Q 043436 127 LGIVAGLQDRVAQVYGGLVHMDFRK--EHMDELGHGIYKPMDI-DLLP--PLYLIYAE---NPSDSGKVHSTVRQRWLDG 198 (302)
Q Consensus 127 ~g~~~g~~D~~~~~~Gg~~~~~~~~--~~~~~~g~~~~~~l~~-~~~~--~~~l~~~~---~~~~t~~~~~~~~~~~~~~ 198 (302)
.+|+++|+|||++.+.... +. ......+++. ..+| +++++.+. ...+|....+.+... .
T Consensus 144 ------~Gsva~s~~GG~v~~~~g~~~~~----~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~~~---~ 210 (380)
T 2hke_A 144 ------SGSACRSAFGGFVIWNKGEKPDG----SDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKT---S 210 (380)
T ss_dssp ------CGGGGGGGSSSEEEEECCSCTTS----TTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHH---C
T ss_pred ------CcceeeehhCCeEEEecCCCCCC----CcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHHhc---C
Confidence 2378999999999865321 10 0001233332 1133 33454433 233454444433221 1
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh----cCCCCCCCccHH-HHHHHHH---c-C-C-ce
Q 043436 199 DEFIISSMKE-VAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRM----FGDDVLGALNIE-MVEIARR---F-G-A-AS 266 (302)
Q Consensus 199 ~~~~~~~~~~-i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l----~~~~~~~~~~l~-l~~~a~~---~-g-~-ga 266 (302)
+ ........ ....+..++.||.++|++.|+++|+.++..+.++ ..+...-.|... +++.+++ . | + ++
T Consensus 211 ~-~~~~~~~~~~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a 289 (380)
T 2hke_A 211 P-LMKKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALA 289 (380)
T ss_dssp T-THHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEE
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceE
Confidence 1 11223333 3467778999999999999999997654433321 111111234444 6666544 4 8 6 78
Q ss_pred eecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 267 KFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 267 klsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
.+||||+++++|++ +++++++.++|++.
T Consensus 290 ~~SGaGPtv~~l~~--~~~~~~v~~~l~~~ 317 (380)
T 2hke_A 290 YTFDAGANCFLFVL--KEDLPEAVAMLMEH 317 (380)
T ss_dssp EECCSSSCEEEEEE--GGGHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEC--HHHHHHHHHHHHHh
Confidence 99999999999998 34577788877654
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.84 E-value=5.9e-19 Score=160.37 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHhHhcCC-----CC---CCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhH
Q 043436 47 VRLVMAICKVFFKYCKDNKI-----DL---HKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPN 118 (302)
Q Consensus 47 ~~~v~~~~~~~~~~~~~~g~-----~~---~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~ 118 (302)
...+..++..+.+.+...+. .+ ...+++|.++++||.++|||||||.++|++.|++++++++ +++.+
T Consensus 90 ~~ri~~~l~~iR~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l~-----~el~~ 164 (414)
T 3f0n_A 90 QPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE-----GDLSE 164 (414)
T ss_dssp CHHHHHHHHHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTCC-----SCCHH
T ss_pred cHHHHHHHHHHHHHhcccccccccccccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCCh-----HHHHH
Confidence 35677777776655432110 00 0257999999999999999999999999999999999864 68889
Q ss_pred HHHHHHHHcCCCCCccceeeeeecCeeEEe-eccccccccCcc-cccccCC-CCCC--CEEEEEeCC---CCChHHHHHH
Q 043436 119 LILNAEKELGIVAGLQDRVAQVYGGLVHMD-FRKEHMDELGHG-IYKPMDI-DLLP--PLYLIYAEN---PSDSGKVHST 190 (302)
Q Consensus 119 la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~-~~~~~~~~~g~~-~~~~l~~-~~~~--~~~l~~~~~---~~~t~~~~~~ 190 (302)
+|+.. .++++.|+|||++.+. ++..+ +.. ...+++. ..+| .++++.++. +.++.+..+.
T Consensus 165 lA~~~---------sGs~~~s~~GG~v~w~~~~~~d----~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~ 231 (414)
T 3f0n_A 165 VARRG---------SGSACRSLYGGFVEWQMGEQAD----GKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQT 231 (414)
T ss_dssp HHHHH---------CGGGGGGGSSSEEEECCCSCTT----CTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHH
T ss_pred HHHHh---------CCCcchHhhCCEEEEEeccCCC----CCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHh
Confidence 99765 2378999999999875 22111 110 1133321 1123 455555433 2334444333
Q ss_pred HHHhhhcCcHHHHHHHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhc----CCCCCCCccHH-HHHHHHHc--
Q 043436 191 VRQRWLDGDEFIISSMKE-VAQMAAEGQAAILEKNYSKLAELMNHNFDLRRRMF----GDDVLGALNIE-MVEIARRF-- 262 (302)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~l~----~~~~~~~~~l~-l~~~a~~~-- 262 (302)
+. ... ..+...+.+ ....+..++.||.++|++.|++++..+...+..++ ++...-.|... +++.++++
T Consensus 232 ~l---~ts-~~~~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~ 307 (414)
T 3f0n_A 232 SV---ETS-TLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNT 307 (414)
T ss_dssp HH---HHC-HHHHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred hc---ccC-ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHH
Confidence 21 111 334455555 56788889999999999999998765532222211 11112234443 55555443
Q ss_pred ---CC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHc
Q 043436 263 ---GA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKA 296 (302)
Q Consensus 263 ---g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~ 296 (302)
|+ ++.++|||++++++++ +++.+++.+.+++.
T Consensus 308 ~~~g~~~~~tsdAGPnv~vl~~--~~~~~~v~~~l~~~ 343 (414)
T 3f0n_A 308 HHGQTKVAYTFDAGPNAVIFTL--EDTVAEFVAAVRHS 343 (414)
T ss_dssp HHTSCCEEEECCSSSCEEEEEE--HHHHHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCEEEEEe--cccHHHHHHHHHHh
Confidence 77 8999999999999998 67788888888754
No 28
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=47.54 E-value=59 Score=27.00 Aligned_cols=65 Identities=14% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhHhcCCCCCCCceEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 50 VMAICKVFFKYCKDNKIDLHKGNFTLSYDTNIPRQTGLSGSSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 50 v~~~~~~~~~~~~~~g~~~~~~g~~i~i~s~iP~~~GLgSSsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
+-+....++.++..+|++. -++-.++...+| .-..+.+++.+++++++++ ++..+|.+-|..+|.
T Consensus 164 i~G~~g~Ll~~~~~~gi~a--~~l~~~vp~y~p-------dP~AA~~lL~~l~~~~gl~--i~~~~L~e~Ae~~e~ 228 (252)
T 3gaa_A 164 IAGMGGGILNECLVRKITG--LSFITPTSVDIP-------DPGAVLSIIEAINKAYNLK--IKTDLLEEQVKALDE 228 (252)
T ss_dssp ECHHHHHHHHHHHHHTCEE--EEEEEEEESSSC-------CHHHHHHHHHHHHHHHCCC--CCCTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCE--EEEEEeCCCCCC-------CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 3445555566666667642 345555555553 4667788899999999999 999999988888876
No 29
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=37.33 E-value=71 Score=27.32 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 043436 203 ISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRR 241 (302)
Q Consensus 203 ~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~ 241 (302)
.+.+.++.+...++.++|+++|.+.|.+.+.+....++.
T Consensus 274 ~~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~a~~~r~~ 312 (314)
T 3ggo_A 274 MKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRME 312 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 344555556677788888899999999888887766653
No 30
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=31.94 E-value=1.4e+02 Score=24.69 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Q 043436 205 SMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRRR 241 (302)
Q Consensus 205 ~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~~ 241 (302)
.++.+.+...++..+|.++|.+.|.+++.+....++.
T Consensus 252 ~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~~ 288 (290)
T 3b1f_A 252 RIENFKQRLDEVSNLIKARDENAIWAFFNQSRQIRKN 288 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 3444445556777888889988888888877666553
No 31
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=30.39 E-value=1.5e+02 Score=24.39 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 043436 202 IISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLRR 240 (302)
Q Consensus 202 ~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~~ 240 (302)
..+.+..+.+....+..++..+|.+.|.+++.+....++
T Consensus 241 ~~~~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~~~r~ 279 (281)
T 2g5c_A 241 VMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRM 279 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 344555555666778889999999999999988766654
No 32
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=29.97 E-value=77 Score=22.28 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHHcCCceeecCCC---------ceEEEEeeCCcchHHHHHHHHHHcCCccc
Q 043436 255 MVEIARRFGAASKFTGSG---------GAVIAFCPNGPSQVELLEDACRKAGFSIE 301 (302)
Q Consensus 255 l~~~a~~~g~gaklsGaG---------g~~~al~~~~~~~~~~~~~~l~~~g~~~~ 301 (302)
+-+.++++|+...+-.|+ |.++.-.+.+.++.++..+.|++.|+.++
T Consensus 38 Is~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vE 93 (106)
T 3dhx_A 38 LSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVE 93 (106)
T ss_dssp HHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 556778888744444333 33333233225578899999999998765
No 33
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=26.00 E-value=1.3e+02 Score=21.95 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 043436 202 IISSMKEVAQMAAEGQAAILEKNYSKLAELMNHNFDLR 239 (302)
Q Consensus 202 ~~~~~~~i~~~~~~~~~al~~~d~~~~~~~~~~~~~~~ 239 (302)
+...++.|..+..+|..+-+.|||+.+..+=...-.+.
T Consensus 7 ll~~Yq~i~~lS~~ML~aA~~gdWD~Lv~lE~~y~~~V 44 (122)
T 3a7m_A 7 FINRWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSI 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 34556777788999999999999999887654443333
No 34
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=24.28 E-value=1.1e+02 Score=26.30 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccHhHHHHHHHH
Q 043436 90 SSAIVCAALDCLLDFYKVRHLVKVEIRPNLILNAEK 125 (302)
Q Consensus 90 SsA~~va~~~al~~~~~~~~~ls~~el~~la~~~E~ 125 (302)
.-..+++++.+++++++++ ++..+|.+-|..+|.
T Consensus 210 dP~AA~~lL~~l~~l~gl~--id~~~L~e~A~~~e~ 243 (319)
T 2p90_A 210 YPAATLKLLQSIADSADLN--LPLLALERDAEKVHR 243 (319)
T ss_dssp CHHHHHHHHHHHHHHHTCC--CCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence 4567778889999999999 999999988888876
No 35
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=23.74 E-value=1.5e+02 Score=24.66 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=33.7
Q ss_pred HH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 253 IE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 253 l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
.| +.+.+.+.|+ -.. .-.+.+..+|+ +++...+.++|++.|+.+
T Consensus 149 ed~~le~aleaGAeDv~--~e~~~~~v~t~--p~~~~~V~~aL~~~g~~~ 194 (249)
T 1lfp_A 149 EEELLEKAIEVGAEDVQ--PGEEVHIIYTV--PEELYEVKENLEKLGVPI 194 (249)
T ss_dssp HHHHHHHHHHHTCSEEE--CCSSEEEEEEC--GGGHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHhcCCceee--cCCceEEEEEC--HHHHHHHHHHHHHcCCCe
Confidence 35 8889999888 443 33466666776 889999999999999865
No 36
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=22.72 E-value=1.9e+02 Score=23.93 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=33.8
Q ss_pred HH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 253 IE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 253 l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
.| +.+.|.+.|+ -.....- |.+..+|+ +++...+.++|++.|+.+
T Consensus 151 ~d~~~e~aieaGAeDv~~~ed-g~~~v~t~--p~~~~~V~~aL~~~g~~~ 197 (247)
T 4f3q_A 151 EEKIMEIALEVGAEDVTTNDD-GSIDVTTL--PEDFEKIRNAMKAADLNP 197 (247)
T ss_dssp HHHHHHHHHHHTCSEEEECTT-SCEEEEEC--GGGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCceeeecCC-ceEEEEEC--HHHHHHHHHHHHHcCCCe
Confidence 45 8888899888 5554432 45556776 789999999999998865
No 37
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=22.46 E-value=85 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHHcCC-ceeecCC-CceEEEEeeCCcchHHHHHHHHH-HcCCc
Q 043436 255 MVEIARRFGA-ASKFTGS-GGAVIAFCPNGPSQVELLEDACR-KAGFS 299 (302)
Q Consensus 255 l~~~a~~~g~-gaklsGa-Gg~~~al~~~~~~~~~~~~~~l~-~~g~~ 299 (302)
|.++++++|. -.++|++ |.-.+.-++ .++++.+.+.|. +.|..
T Consensus 118 LadIAekyG~G~irlTt~rqNI~L~gi~--~e~le~l~~eL~~~~Gl~ 163 (437)
T 3or1_A 118 ICDVWDLRGSGLTNMHGSTGDIVLLGTQ--TPQLEEIFFEMTHNLNTD 163 (437)
T ss_dssp HHHHHHHHSCSEEESCCSSSCEEEECCC--GGGHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhCCCEEEEcCccceEEEecCC--HHHHHHHHHHHHhhcCcC
Confidence 6677778877 4788876 443333333 567788888887 66654
No 38
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=20.45 E-value=1.2e+02 Score=22.42 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHH
Q 043436 207 KEVAQMAAEGQAAILEKNYSKLAELMN 233 (302)
Q Consensus 207 ~~i~~~~~~~~~al~~~d~~~~~~~~~ 233 (302)
.+|.++..++.+|+..||++.+.+++.
T Consensus 12 ~eI~~~~~~~~~Ai~~gD~~~~~~l~~ 38 (143)
T 2f86_B 12 QDIVRVTQTLLDAISCKDFETYTRLCD 38 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEE
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHhcC
Confidence 455577888999999999998876653
No 39
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=20.14 E-value=2.4e+02 Score=23.39 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred cHH-HHHHHHHcCC-ceeecCCCceEEEEeeCCcchHHHHHHHHHHcCCcc
Q 043436 252 NIE-MVEIARRFGA-ASKFTGSGGAVIAFCPNGPSQVELLEDACRKAGFSI 300 (302)
Q Consensus 252 ~l~-l~~~a~~~g~-gaklsGaGg~~~al~~~~~~~~~~~~~~l~~~g~~~ 300 (302)
..| +.+.|.+.|+ -... .-.+.+..+|+ +++...+.++|++.|+.+
T Consensus 149 ~ed~~le~aleaGAeDv~~-~e~~~~~v~t~--p~~~~~V~~aL~~~g~~~ 196 (249)
T 1kon_A 149 DEDTIMEAALEAGAEDVVT-YDDGAIDVYTA--WEEMGKVRDALEAAGLKA 196 (249)
T ss_dssp CHHHHHHHHHHHTCSEEEE-CTTSCEEEEEE--GGGHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHhCCCceeee-cCCceEEEEEC--HHHHHHHHHHHHHcCCCe
Confidence 345 8888999888 4432 23455666777 789999999999999865
Done!