Query 043437
Match_columns 426
No_of_seqs 210 out of 1766
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.3E-76 9.4E-81 583.6 44.3 413 14-426 10-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 7.4E-58 1.6E-62 455.3 36.5 307 76-425 109-449 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 3.4E-56 7.4E-61 439.3 35.7 338 81-425 40-397 (398)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-56 4E-61 429.7 31.6 299 80-421 3-317 (317)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 5.6E-56 1.2E-60 428.0 31.6 300 83-421 2-325 (325)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 6.7E-56 1.5E-60 427.1 31.7 300 86-425 2-326 (326)
7 cd05486 Cathespin_E Cathepsin 100.0 7.1E-56 1.5E-60 425.5 29.8 293 88-421 1-316 (316)
8 cd05477 gastricsin Gastricsins 100.0 5.5E-55 1.2E-59 419.8 32.2 297 85-422 1-318 (318)
9 cd06098 phytepsin Phytepsin, a 100.0 6.2E-55 1.3E-59 418.7 31.4 289 80-421 3-317 (317)
10 cd05487 renin_like Renin stimu 100.0 7.3E-55 1.6E-59 420.1 32.0 299 82-422 3-326 (326)
11 cd05472 cnd41_like Chloroplast 100.0 1.2E-54 2.7E-59 413.9 32.8 289 87-424 1-299 (299)
12 PTZ00147 plasmepsin-1; Provisi 100.0 6E-54 1.3E-58 424.1 34.5 300 77-423 129-450 (453)
13 cd05488 Proteinase_A_fungi Fun 100.0 3.2E-54 6.9E-59 414.6 31.1 296 81-421 4-320 (320)
14 cd05485 Cathepsin_D_like Cathe 100.0 6.1E-54 1.3E-58 413.7 31.4 302 79-421 3-329 (329)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.1E-53 1.1E-57 416.6 34.3 302 76-423 127-449 (450)
16 cd05489 xylanase_inhibitor_I_l 100.0 2.3E-51 4.9E-56 398.4 31.3 312 94-422 2-361 (362)
17 cd05473 beta_secretase_like Be 100.0 2.5E-51 5.4E-56 401.2 30.9 308 86-426 2-349 (364)
18 cd05475 nucellin_like Nucellin 100.0 5.7E-51 1.2E-55 383.1 28.3 258 86-424 1-273 (273)
19 cd05476 pepsin_A_like_plant Ch 100.0 2.4E-49 5.2E-54 370.7 28.6 252 87-424 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 1.2E-49 2.5E-54 375.6 26.5 264 88-421 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 1.9E-49 4E-54 381.8 22.3 294 87-422 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 5.7E-47 1.2E-51 360.8 28.1 268 87-422 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.4E-44 3E-49 342.2 29.1 268 88-421 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.6E-31 5.6E-36 229.5 14.4 161 88-259 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 1.6E-24 3.5E-29 174.7 12.1 106 90-220 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.9 3.1E-24 6.7E-29 185.2 12.7 141 281-421 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.2 4.2E-06 9.1E-11 65.0 7.3 93 87-222 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0013 2.9E-08 53.5 7.9 97 83-222 7-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.9 0.0083 1.8E-07 45.6 8.8 89 90-221 1-89 (90)
30 PF11925 DUF3443: Protein of u 95.7 0.3 6.5E-06 46.7 13.4 108 88-223 24-149 (370)
31 cd05479 RP_DDI RP_DDI; retrope 95.2 0.064 1.4E-06 43.8 6.4 26 394-419 99-124 (124)
32 cd05479 RP_DDI RP_DDI; retrope 95.1 0.17 3.6E-06 41.3 8.7 92 85-222 14-107 (124)
33 COG3577 Predicted aspartyl pro 94.0 0.1 2.2E-06 45.5 5.1 103 82-232 100-202 (215)
34 cd05484 retropepsin_like_LTR_2 93.3 0.1 2.2E-06 40.0 3.5 29 88-118 1-29 (91)
35 PF08284 RVP_2: Retroviral asp 92.3 0.29 6.4E-06 40.5 5.2 97 303-422 32-132 (135)
36 PF13975 gag-asp_proteas: gag- 90.6 0.46 1E-05 34.5 4.2 35 84-120 5-39 (72)
37 cd06095 RP_RTVL_H_like Retrope 90.5 2.1 4.5E-05 32.2 7.9 26 91-118 2-27 (86)
38 PF00077 RVP: Retroviral aspar 86.6 1 2.3E-05 34.8 4.1 28 89-118 7-34 (100)
39 TIGR03698 clan_AA_DTGF clan AA 85.6 4.1 9E-05 32.1 7.0 24 394-417 84-107 (107)
40 TIGR02281 clan_AA_DTGA clan AA 81.2 3.6 7.7E-05 33.3 5.1 36 279-325 9-44 (121)
41 PF02160 Peptidase_A3: Caulifl 79.1 2.3 4.9E-05 37.5 3.5 97 303-421 20-117 (201)
42 cd05482 HIV_retropepsin_like R 78.5 2.8 6.1E-05 31.7 3.4 25 91-117 2-26 (87)
43 PF13650 Asp_protease_2: Aspar 76.4 3.2 6.9E-05 30.9 3.3 29 289-325 3-31 (90)
44 PF12384 Peptidase_A2B: Ty3 tr 73.6 16 0.00034 31.1 6.8 23 303-325 45-67 (177)
45 cd05484 retropepsin_like_LTR_2 73.4 4.8 0.0001 30.5 3.6 30 288-325 4-33 (91)
46 cd05483 retropepsin_like_bacte 70.4 7.7 0.00017 29.2 4.2 30 288-325 6-35 (96)
47 PF13975 gag-asp_proteas: gag- 67.7 9.8 0.00021 27.5 4.0 29 289-325 13-41 (72)
48 cd06095 RP_RTVL_H_like Retrope 64.2 7.6 0.00016 29.1 3.0 29 289-325 3-31 (86)
49 PF12384 Peptidase_A2B: Ty3 tr 51.3 21 0.00045 30.4 3.6 28 90-117 35-62 (177)
50 PF09668 Asp_protease: Asparty 43.9 41 0.00089 27.3 4.2 36 85-122 22-57 (124)
51 cd05481 retropepsin_like_LTR_1 42.4 27 0.00059 26.6 2.9 23 303-325 10-32 (93)
52 COG5550 Predicted aspartyl pro 42.2 16 0.00034 29.5 1.5 86 306-417 29-117 (125)
53 TIGR03698 clan_AA_DTGF clan AA 39.4 40 0.00086 26.5 3.5 24 90-113 2-29 (107)
54 COG3577 Predicted aspartyl pro 38.9 99 0.0022 27.4 6.0 45 269-325 94-138 (215)
55 cd05481 retropepsin_like_LTR_1 38.2 26 0.00057 26.7 2.2 24 92-117 3-27 (93)
56 PF07172 GRP: Glycine rich pro 37.8 23 0.0005 27.2 1.8 13 1-14 1-13 (95)
57 cd06094 RP_Saci_like RP_Saci_l 28.9 49 0.0011 25.1 2.2 21 99-119 8-28 (89)
58 PF09668 Asp_protease: Asparty 26.9 75 0.0016 25.8 3.2 30 288-325 28-57 (124)
59 PF05984 Cytomega_UL20A: Cytom 26.8 74 0.0016 23.5 2.7 18 14-31 15-33 (100)
60 PF08284 RVP_2: Retroviral asp 24.2 1.1E+02 0.0024 25.1 3.8 30 86-117 20-49 (135)
61 cd05475 nucellin_like Nucellin 21.3 1E+02 0.0022 28.6 3.5 32 86-117 157-194 (273)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.3e-76 Score=583.56 Aligned_cols=413 Identities=64% Similarity=1.110 Sum_probs=348.0
Q ss_pred HHhhhccccc-cCCceEEEEecCCCCCCCCCCCCCChHHHHHHHHhhhhhhhccccccccCCCCccceeecCCccEEEEE
Q 043437 14 LCLSSLSITE-AKGGFSLDLIRRDAPKSPFYSPDETYHQRVTKALKRSVNRVSHFDPAIITPNTAQADIISALGEYVMNI 92 (426)
Q Consensus 14 ~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i 92 (426)
+.+..+.... +..+++++|+||+++++|++.+..+..++++++++++.+|.+++..+......+..+...++++|+++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Y~v~i 89 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQSDLISNGGEYLMNI 89 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccccCcccCCccEEEEE
Confidence 4444444444 778999999999999999988888888999999999999998875442222345555567788999999
Q ss_pred EeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCC-CCCCCCCceeeeEeCCC
Q 043437 93 SIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERT-SCSTEETCEYSATYGDR 171 (426)
Q Consensus 93 ~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~-~c~~~~~~~~~~~Y~~g 171 (426)
.||||||++.|++||||+++||+|.+|..|..+.++.|||++|+||+.++|+++.|+..... .|..++.|.|.+.|+||
T Consensus 90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdg 169 (431)
T PLN03146 90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDG 169 (431)
T ss_pred EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCC
Confidence 99999999999999999999999999999988889999999999999999999999877765 48776779999999999
Q ss_pred CeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCCCCCchhhhcccccCCeeEEeecCCCCC-C
Q 043437 172 SFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGGGSVSLVTQMGSSIGGKFSYCLVPFLSS-E 250 (426)
Q Consensus 172 ~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~~~~~~Fs~~l~~~~~~-~ 250 (426)
+.+.|++++|+|+|++..++...++++.|||++...+.|....+||||||++..|+++|++....++|||||.+...+ .
T Consensus 170 s~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~ 249 (431)
T PLN03146 170 SFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSN 249 (431)
T ss_pred CceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCC
Confidence 987799999999999865444578999999999887766346899999999999999998765567999999764321 1
Q ss_pred CcceEEeCCCCccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecC-----CCCCcEEEccCCccccCcHHHHHHH
Q 043437 251 SSSKINFGSNGVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDD-----ASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 251 ~~G~l~~Gg~~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~-----~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
..|.|+||+.+++.+.++.|+|++..+...+|.|+|++|+||++.+.++. .+.+.+||||||++++||+++|++|
T Consensus 250 ~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l 329 (431)
T PLN03146 250 GTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSEL 329 (431)
T ss_pred CcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHH
Confidence 47999999976666656899999865446799999999999999877642 1236899999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCCeEEEEEEcCCCcceechhhhcc
Q 043437 326 TSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDTSVCFTFKGMEGQSIYGNLAQAN 405 (426)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~ilG~~fl~~ 405 (426)
.+++.+++...........+++|+.......+|+|+|+|+|+++.|++++|+++..++..|+++.+....||||+.|||+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~~q~~ 409 (431)
T PLN03146 330 ESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPTSSIAIFGNLAQMN 409 (431)
T ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecCCCceEECeeeEee
Confidence 99999888644333333345679976444578999999999999999999999887777899987766679999999999
Q ss_pred EEEEEECCCCEEEEeeCCCCC
Q 043437 406 FLVGYDTKAKTVSFKPTDCSK 426 (426)
Q Consensus 406 ~y~vfD~~~~~igfa~~~c~~ 426 (426)
+|++||++++|||||+++|++
T Consensus 410 ~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 410 FLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred EEEEEECCCCEEeeecCCcCc
Confidence 999999999999999999985
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.4e-58 Score=455.25 Aligned_cols=307 Identities=22% Similarity=0.355 Sum_probs=253.5
Q ss_pred CccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCC
Q 043437 76 TAQADIISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTS 155 (426)
Q Consensus 76 ~~~~~~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~ 155 (426)
..+.+.++.|.+|+++|+||||||+|.|++||||+++||+|..|..|.++.++.|||++|+||+...+...
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~--------- 179 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDE--------- 179 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCc---------
Confidence 45666788899999999999999999999999999999999999865557889999999999998432110
Q ss_pred CCCCCCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCCc-------
Q 043437 156 CSTEETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSVS------- 226 (426)
Q Consensus 156 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------- 226 (426)
...+.+.|++|+.. |.+++|+|+||+. .+++|.||+++...+ .| ....|||||||++..+
T Consensus 180 -----~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~ 248 (482)
T PTZ00165 180 -----SAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKA 248 (482)
T ss_pred -----cceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEeccccccccccccceeecCCCcccccccCCC
Confidence 12577999999887 9999999999997 999999999998765 45 5679999999998652
Q ss_pred ------hhhhcccccCCeeEEeecCCCCCCCcceEEeCCC-CccC--CCceEEeecccCCCCceEEEEEEEEEEcceeee
Q 043437 227 ------LVTQMGSSIGGKFSYCLVPFLSSESSSKINFGSN-GVVS--GTGVVTTPLVAKDPDTFYFLTLESISVGKKKIH 297 (426)
Q Consensus 227 ------l~~ql~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg~-~~~~--~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 297 (426)
+.+| +.+..++||+||.+... .+|+|+|||. .++. +..+.|+|+.. ..+|.|.+++|+||++.+.
T Consensus 249 ~p~~~~l~~q-gli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~Pv~~---~~yW~i~l~~i~vgg~~~~ 322 (482)
T PTZ00165 249 LPIVDNIKKQ-NLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWFPVIS---TDYWEIEVVDILIDGKSLG 322 (482)
T ss_pred CCHHHHHHHc-CCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEEEccc---cceEEEEeCeEEECCEEee
Confidence 3344 56788999999976433 4799999993 3333 33499999986 6799999999999998776
Q ss_pred ecCCCCCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccc-----eEEeC
Q 043437 298 FDDASEGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGA-----DVVLS 372 (426)
Q Consensus 298 ~~~~~~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~-----~~~l~ 372 (426)
.. .....+|+||||+++++|++++++|.+++... ..|+... .+|+|+|+|+|. ++.|+
T Consensus 323 ~~-~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~~---~lP~itf~f~g~~g~~v~~~l~ 385 (482)
T PTZ00165 323 FC-DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNKD---SLPRISFVLEDVNGRKIKFDMD 385 (482)
T ss_pred ec-CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccccc---cCCceEEEECCCCCceEEEEEc
Confidence 42 24678999999999999999999998877432 1498654 689999999864 89999
Q ss_pred CCceEEEc----CCCeEEEE-EEcCC------CcceechhhhccEEEEEECCCCEEEEeeCCCC
Q 043437 373 PENTFIRT----SDTSVCFT-FKGME------GQSIYGNLAQANFLVGYDTKAKTVSFKPTDCS 425 (426)
Q Consensus 373 ~~~~~~~~----~~~~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c~ 425 (426)
|++|+++. .++..|+. |...+ +.||||++|||++|+|||.+++|||||+++|.
T Consensus 386 p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 386 PEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred hHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 99999974 23458964 77542 47999999999999999999999999999985
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-56 Score=439.26 Aligned_cols=338 Identities=41% Similarity=0.714 Sum_probs=277.7
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCC
Q 043437 81 IISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCT-ECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTE 159 (426)
Q Consensus 81 ~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~-~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~ 159 (426)
....+++|+++|.||||||+|.|++||||+++||+|..|. .|..+.++.|+|++|+||+..+|.++.|...... |..+
T Consensus 40 ~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~~~~ 118 (398)
T KOG1339|consen 40 SSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-CSPN 118 (398)
T ss_pred ccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-cccC
Confidence 3456789999999999999999999999999999999999 8976666669999999999999999999988876 7777
Q ss_pred CCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCC-C-CCCceeEeeCCCCCchhhhccccc--
Q 043437 160 ETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTF-N-ENATGIVGLGGGSVSLVTQMGSSI-- 235 (426)
Q Consensus 160 ~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGLg~~~~sl~~ql~~~~-- 235 (426)
+.|.|.+.|++|+.+.|++++|+|++++.+ .+.++++.|||+..+.+.+ . .+.+||||||+..+++..|+....
T Consensus 119 ~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 119 SSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNA 196 (398)
T ss_pred CcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCC
Confidence 889999999998777799999999999832 2277889999999987643 3 578999999999999999977653
Q ss_pred CCeeEEeecCCCCCC-CcceEEeCCCCccCCCc-eEEeecccCCCCceEEEEEEEEEEcceeeeecC----CCCCcEEEc
Q 043437 236 GGKFSYCLVPFLSSE-SSSKINFGSNGVVSGTG-VVTTPLVAKDPDTFYFLTLESISVGKKKIHFDD----ASEGNIIID 309 (426)
Q Consensus 236 ~~~Fs~~l~~~~~~~-~~G~l~~Gg~~~~~~~~-~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~----~~~~~~iiD 309 (426)
.++||+||.+.+... ..|.|+||+.+.....+ +.|+||..... .+|.|.+.+|+||++. ..+. ...+++|+|
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~~~~~~~~~~iiD 274 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSSLFCTDGGGAIID 274 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcceEecCCCCEEEE
Confidence 335999999864431 47999999944443333 99999998643 5999999999999854 2221 225899999
Q ss_pred cCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCC-CCCCeEEEEEc-cceEEeCCCceEEEcCCCeE-E
Q 043437 310 SGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSD-FKAPQITVHFS-GADVVLSPENTFIRTSDTSV-C 386 (426)
Q Consensus 310 TGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~P~l~f~f~-g~~~~l~~~~~~~~~~~~~~-C 386 (426)
|||++++||+++|++|.+++...+.. ......+ +..|+..... ..+|+|+|+|+ |+.|.+++++|+++...+.. |
T Consensus 275 SGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~-~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~C 352 (398)
T KOG1339|consen 275 SGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEY-FVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVC 352 (398)
T ss_pred CCcceeeccHHHHHHHHHHHHhheec-cccCCce-eeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCCCCce
Confidence 99999999999999999999986411 1112223 3459976421 13899999999 79999999999998876544 9
Q ss_pred EEEEcC-C--CcceechhhhccEEEEEECC-CCEEEEee--CCCC
Q 043437 387 FTFKGM-E--GQSIYGNLAQANFLVGYDTK-AKTVSFKP--TDCS 425 (426)
Q Consensus 387 ~~i~~~-~--~~~ilG~~fl~~~y~vfD~~-~~~igfa~--~~c~ 425 (426)
+++... + ..||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 353 l~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 353 LAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 995443 3 37999999999999999999 99999999 7886
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-56 Score=429.72 Aligned_cols=299 Identities=27% Similarity=0.434 Sum_probs=251.4
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCC
Q 043437 80 DIISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTE 159 (426)
Q Consensus 80 ~~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~ 159 (426)
+.+..+..|+++|+||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~----------------- 65 (317)
T cd05478 3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG----------------- 65 (317)
T ss_pred cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC-----------------
Confidence 345568999999999999999999999999999999999987655778999999999999876
Q ss_pred CCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCC--CCCCceeEeeCCCCCc------hhhhc
Q 043437 160 ETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTF--NENATGIVGLGGGSVS------LVTQM 231 (426)
Q Consensus 160 ~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------l~~ql 231 (426)
+.|.+.|++|+. .|.+++|+|+||+. .++++.|||++...+.+ ....+||||||++..+ ++.||
T Consensus 66 --~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 137 (317)
T cd05478 66 --QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNM 137 (317)
T ss_pred --cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHH
Confidence 899999999986 59999999999987 89999999998876644 3468999999987543 33333
Q ss_pred ---ccccCCeeEEeecCCCCCCCcceEEeCCC--CccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcE
Q 043437 232 ---GSSIGGKFSYCLVPFLSSESSSKINFGSN--GVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNI 306 (426)
Q Consensus 232 ---~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 306 (426)
+.+.+++||+||.+... ..|+|+|||. +++.++ +.|+|+.. ..+|.|.+++++||++.+.. ..+..+
T Consensus 138 ~~~g~i~~~~FS~~L~~~~~--~~g~l~~Gg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~v~v~g~~~~~--~~~~~~ 209 (317)
T cd05478 138 MSQGLVSQDLFSVYLSSNGQ--QGSVVTFGGIDPSYYTGS-LNWVPVTA---ETYWQITVDSVTINGQVVAC--SGGCQA 209 (317)
T ss_pred HhCCCCCCCEEEEEeCCCCC--CCeEEEEcccCHHHccCc-eEEEECCC---CcEEEEEeeEEEECCEEEcc--CCCCEE
Confidence 56678999999987533 4799999994 345455 99999975 68999999999999998765 446689
Q ss_pred EEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCCeEE
Q 043437 307 IIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDTSVC 386 (426)
Q Consensus 307 iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~~~C 386 (426)
+|||||+++++|++++++|.+++..... ..+.+.+ +|+... .+|+|+|+|+|++++||+++|+.+. ...|
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~~~----~~~~~~~-~C~~~~---~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C 279 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGASQN----QNGEMVV-NCSSIS---SMPDVVFTINGVQYPLPPSAYILQD--QGSC 279 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCccc----cCCcEEe-CCcCcc---cCCcEEEEECCEEEEECHHHheecC--CCEE
Confidence 9999999999999999999998865422 1233334 498653 6899999999999999999999876 4579
Q ss_pred EE-EEcCC--CcceechhhhccEEEEEECCCCEEEEee
Q 043437 387 FT-FKGME--GQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 387 ~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
++ |...+ +.||||++|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 280 TSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred eEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 86 77654 6799999999999999999999999996
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.6e-56 Score=427.96 Aligned_cols=300 Identities=23% Similarity=0.414 Sum_probs=244.8
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCc--ccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCC
Q 043437 83 SALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTEC--YKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEE 160 (426)
Q Consensus 83 ~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C--~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~ 160 (426)
+.+.+|+++|+||||+|++.|+|||||+++||+|..|..| .+..++.|+|++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------------ 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG------------------ 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC------------------
Confidence 4688999999999999999999999999999999999732 22567899999999998754
Q ss_pred CceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCCch------hhhc-
Q 043437 161 TCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSVSL------VTQM- 231 (426)
Q Consensus 161 ~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl------~~ql- 231 (426)
+.|.+.|++|+. .|.+++|+|+||+. .++++.||+++...+ .| ....+||||||++..+. +++|
T Consensus 64 -~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 136 (325)
T cd05490 64 -TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIM 136 (325)
T ss_pred -cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHH
Confidence 899999999986 59999999999997 999999999988765 34 45789999999976652 2222
Q ss_pred --ccccCCeeEEeecCCCCCCCcceEEeCCC--CccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEE
Q 043437 232 --GSSIGGKFSYCLVPFLSSESSSKINFGSN--GVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNII 307 (426)
Q Consensus 232 --~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~i 307 (426)
+.+..++||+||.+.......|+|+|||. .++.++ +.|+|+.. ..+|.|++++|+||++.... .....++
T Consensus 137 ~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~-l~~~~~~~---~~~w~v~l~~i~vg~~~~~~--~~~~~ai 210 (325)
T cd05490 137 AQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGD-LHYVNVTR---KAYWQIHMDQVDVGSGLTLC--KGGCEAI 210 (325)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCc-eEEEEcCc---ceEEEEEeeEEEECCeeeec--CCCCEEE
Confidence 56778999999985422114799999993 344444 99999975 67999999999999874332 3457899
Q ss_pred EccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCC--CeE
Q 043437 308 IDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSD--TSV 385 (426)
Q Consensus 308 iDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~--~~~ 385 (426)
|||||+++++|.+++++|.+++.+. ....+.+.+ +|+... .+|+|+|+|+|+.++|+|++|+++... ...
T Consensus 211 iDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~~---~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~ 282 (325)
T cd05490 211 VDTGTSLITGPVEEVRALQKAIGAV----PLIQGEYMI-DCEKIP---TLPVISFSLGGKVYPLTGEDYILKVSQRGTTI 282 (325)
T ss_pred ECCCCccccCCHHHHHHHHHHhCCc----cccCCCEEe-cccccc---cCCCEEEEECCEEEEEChHHeEEeccCCCCCE
Confidence 9999999999999999999988643 111334444 498653 689999999999999999999987643 357
Q ss_pred EEE-EEcC------CCcceechhhhccEEEEEECCCCEEEEee
Q 043437 386 CFT-FKGM------EGQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 386 C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
|++ |+.. ...||||+.|||++|+|||++++|||||+
T Consensus 283 C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 283 CLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 986 7642 25799999999999999999999999996
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=6.7e-56 Score=427.07 Aligned_cols=300 Identities=26% Similarity=0.448 Sum_probs=247.3
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceee
Q 043437 86 GEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYS 165 (426)
Q Consensus 86 ~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 165 (426)
+.|+++|+||||+|++.|+|||||+++||+|..|..|..+.++.|+|++|+|++...|++..|.. ...|.+ +.|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~-~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLN-NKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCC-CcCcEE
Confidence 57999999999999999999999999999999999998777899999999999999999999953 234543 569999
Q ss_pred eEeCCCCeeeeeEEEEEEEecCCCCC--CceeceeeeeeeEecCCCC-CCCCceeEeeCCCCCc--------hhhhcccc
Q 043437 166 ATYGDRSFSNGNLAVETVTLGSTNGR--PAALRNIIFGCGHNDDGTF-NENATGIVGLGGGSVS--------LVTQMGSS 234 (426)
Q Consensus 166 ~~Y~~g~~~~G~~~~D~v~ig~~~~~--~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s--------l~~ql~~~ 234 (426)
+.|++|+.+.|.+++|+|+||+.... +....++.|||+....+.| ....+||||||+...+ +.+| ..+
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~-~~~ 157 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK-RPK 157 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh-ccc
Confidence 99999987779999999999986211 0112357899999887766 5678999999998653 2233 223
Q ss_pred c--CCeeEEeecCCCCCCCcceEEeCCC--CccC---------CCceEEeecccCCCCceEEEEEEEEEEcceeeeecCC
Q 043437 235 I--GGKFSYCLVPFLSSESSSKINFGSN--GVVS---------GTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDA 301 (426)
Q Consensus 235 ~--~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~---------~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 301 (426)
. .++||+||.+ ..|.|+|||. +++. ...+.|+|+.. ..+|.|.+++|+|+++.......
T Consensus 158 ~~~~~~FS~~l~~-----~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~y~v~l~~i~vg~~~~~~~~~ 229 (326)
T cd06096 158 LKKDKIFSICLSE-----DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR---KYYYYVKLEGLSVYGTTSNSGNT 229 (326)
T ss_pred ccCCceEEEEEcC-----CCeEEEECccChhhhcccccccccccCCceEEeccC---CceEEEEEEEEEEcccccceecc
Confidence 2 5899999975 3699999993 3333 13489999986 57999999999999875111114
Q ss_pred CCCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEc-cceEEeCCCceEEEc
Q 043437 302 SEGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFS-GADVVLSPENTFIRT 380 (426)
Q Consensus 302 ~~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~-g~~~~l~~~~~~~~~ 380 (426)
....++|||||++++||++++++|.+++ |+|+|+|+ |++++|+|++|+++.
T Consensus 230 ~~~~aivDSGTs~~~lp~~~~~~l~~~~----------------------------P~i~~~f~~g~~~~i~p~~y~~~~ 281 (326)
T cd06096 230 KGLGMLVDSGSTLSHFPEDLYNKINNFF----------------------------PTITIIFENNLKIDWKPSSYLYKK 281 (326)
T ss_pred cCCCEEEeCCCCcccCCHHHHHHHHhhc----------------------------CcEEEEEcCCcEEEECHHHhcccc
Confidence 5788999999999999999999986655 89999998 799999999999987
Q ss_pred CCCeEEEEEEcCCCcceechhhhccEEEEEECCCCEEEEeeCCCC
Q 043437 381 SDTSVCFTFKGMEGQSIYGNLAQANFLVGYDTKAKTVSFKPTDCS 425 (426)
Q Consensus 381 ~~~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c~ 425 (426)
.+..+|+++...++.+|||++|||++|+|||++++|||||+++|.
T Consensus 282 ~~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 282 ESFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CCceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 665556667766678999999999999999999999999999994
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.1e-56 Score=425.46 Aligned_cols=293 Identities=27% Similarity=0.434 Sum_probs=242.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceeeeE
Q 043437 88 YVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSAT 167 (426)
Q Consensus 88 Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~~ 167 (426)
|+++|+||||+|+++|+|||||+++||+|..|..+.+..++.|||++|+|++..+ +.|.+.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~-------------------~~~~i~ 61 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG-------------------EAFSIQ 61 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC-------------------cEEEEE
Confidence 8999999999999999999999999999999984333678899999999999876 899999
Q ss_pred eCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCCc----------hhhhccccc
Q 043437 168 YGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSVS----------LVTQMGSSI 235 (426)
Q Consensus 168 Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----------l~~ql~~~~ 235 (426)
|++|+.. |.+++|+|+||+. .++++.||++....+ .| ....+||||||++..+ +.+| +.+.
T Consensus 62 Yg~g~~~-G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~q-g~i~ 134 (316)
T cd05486 62 YGTGSLT-GIIGIDQVTVEGI-----TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQ-NLVE 134 (316)
T ss_pred eCCcEEE-EEeeecEEEECCE-----EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhc-CCCC
Confidence 9999864 9999999999987 999999999887765 34 5678999999997655 2344 5667
Q ss_pred CCeeEEeecCCCCCCCcceEEeCCC--CccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEEEccCCc
Q 043437 236 GGKFSYCLVPFLSSESSSKINFGSN--GVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNIIIDSGTT 313 (426)
Q Consensus 236 ~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~ 313 (426)
.++||+||.+.......|+|+|||. +++.++ +.|+|+.. ..+|.|++++|+||++.+.. .....++|||||+
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pi~~---~~~w~v~l~~i~v~g~~~~~--~~~~~aiiDTGTs 208 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQ-LNWVPVTV---QGYWQIQLDNIQVGGTVIFC--SDGCQAIVDTGTS 208 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccc-eEEEECCC---ceEEEEEeeEEEEecceEec--CCCCEEEECCCcc
Confidence 8999999986422114799999993 455555 99999975 78999999999999987654 3457899999999
Q ss_pred cccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEc--CCCeEEEE-EE
Q 043437 314 LTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRT--SDTSVCFT-FK 390 (426)
Q Consensus 314 ~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~--~~~~~C~~-i~ 390 (426)
++++|++++++|.+.+.... .++.+.+ +|+... .+|+|+|+|+|+.++|++++|++.. .....|++ |+
T Consensus 209 ~~~lP~~~~~~l~~~~~~~~-----~~~~~~~-~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~ 279 (316)
T cd05486 209 LITGPSGDIKQLQNYIGATA-----TDGEYGV-DCSTLS---LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQ 279 (316)
T ss_pred hhhcCHHHHHHHHHHhCCcc-----cCCcEEE-eccccc---cCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEE
Confidence 99999999999988775421 1334444 498543 6899999999999999999999875 23468975 76
Q ss_pred cCC------CcceechhhhccEEEEEECCCCEEEEee
Q 043437 391 GME------GQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 391 ~~~------~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
..+ +.||||++|||++|+|||.+++|||||+
T Consensus 280 ~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 280 GLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 432 4699999999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.5e-55 Score=419.82 Aligned_cols=297 Identities=24% Similarity=0.408 Sum_probs=246.7
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCcee
Q 043437 85 LGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEY 164 (426)
Q Consensus 85 ~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 164 (426)
|..|+++|+||||+|++.|+|||||+++||+|..|..+.+..++.|||++|+|++... |.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~-------------------~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG-------------------ETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC-------------------cEE
Confidence 4679999999999999999999999999999999986444678899999999999876 899
Q ss_pred eeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCC------chhhhc---cc
Q 043437 165 SATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSV------SLVTQM---GS 233 (426)
Q Consensus 165 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~------sl~~ql---~~ 233 (426)
++.|++|+.. |.+++|+|++|+. .++++.|||+....+ .| ....+||||||++.. ++++|| +.
T Consensus 62 ~~~Yg~Gs~~-G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~ 135 (318)
T cd05477 62 SLQYGSGSLT-GIFGYDTVTVQGI-----IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNL 135 (318)
T ss_pred EEEECCcEEE-EEEEeeEEEECCE-----EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCC
Confidence 9999999865 9999999999987 999999999998765 34 456899999998643 345444 55
Q ss_pred ccCCeeEEeecCCCCCCCcceEEeCCCC--ccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEEEccC
Q 043437 234 SIGGKFSYCLVPFLSSESSSKINFGSNG--VVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNIIIDSG 311 (426)
Q Consensus 234 ~~~~~Fs~~l~~~~~~~~~G~l~~Gg~~--~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTG 311 (426)
+.+++||+||.+.... ..|.|+|||.+ ++.++ +.|+|+.. ..+|.|.+++|+|+++.+... ..+..+|||||
T Consensus 136 i~~~~FS~~L~~~~~~-~~g~l~fGg~d~~~~~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~-~~~~~~iiDSG 209 (318)
T cd05477 136 LQAPIFSFYLSGQQGQ-QGGELVFGGVDNNLYTGQ-IYWTPVTS---ETYWQIGIQGFQINGQATGWC-SQGCQAIVDTG 209 (318)
T ss_pred cCCCEEEEEEcCCCCC-CCCEEEEcccCHHHcCCc-eEEEecCC---ceEEEEEeeEEEECCEEeccc-CCCceeeECCC
Confidence 6789999999875333 47999999943 44444 99999975 689999999999999876532 23567999999
Q ss_pred CccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCCeEEE-EEE
Q 043437 312 TTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDTSVCF-TFK 390 (426)
Q Consensus 312 t~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~~~C~-~i~ 390 (426)
|+++++|++++++|++++...... .+.+. .+|+... .+|.|+|+|+|+++.|++++|+.+. ...|+ +|.
T Consensus 210 tt~~~lP~~~~~~l~~~~~~~~~~----~~~~~-~~C~~~~---~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~ 279 (318)
T cd05477 210 TSLLTAPQQVMSTLMQSIGAQQDQ----YGQYV-VNCNNIQ---NLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIE 279 (318)
T ss_pred CccEECCHHHHHHHHHHhCCcccc----CCCEE-EeCCccc---cCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEE
Confidence 999999999999999988765321 23333 3598653 6899999999999999999999875 35796 576
Q ss_pred cC------C-CcceechhhhccEEEEEECCCCEEEEeeC
Q 043437 391 GM------E-GQSIYGNLAQANFLVGYDTKAKTVSFKPT 422 (426)
Q Consensus 391 ~~------~-~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 422 (426)
+. + ..||||++|||++|++||++++|||||++
T Consensus 280 ~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 280 PTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 42 1 46999999999999999999999999986
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=6.2e-55 Score=418.73 Aligned_cols=289 Identities=27% Similarity=0.457 Sum_probs=241.1
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC---CcccCCCCCCCCCCCCccccccCCCcccCCcCCCCC
Q 043437 80 DIISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCT---ECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSC 156 (426)
Q Consensus 80 ~~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~---~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c 156 (426)
+.+..+.+|+++|+||||+|++.|+|||||+++||+|..|. .| ..++.|||++|+|++..+
T Consensus 3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC--------------
Confidence 34667899999999999999999999999999999999996 67 567899999999999876
Q ss_pred CCCCCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCCc--------
Q 043437 157 STEETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSVS-------- 226 (426)
Q Consensus 157 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s-------- 226 (426)
..+.+.|++|+.. |.+++|+|+||+. .++++.||+++...+ .| ....+||||||++..+
T Consensus 67 -----~~~~i~Yg~G~~~-G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 135 (317)
T cd06098 67 -----TSASIQYGTGSIS-GFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVW 135 (317)
T ss_pred -----CEEEEEcCCceEE-EEEEeeEEEECCE-----EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHH
Confidence 7899999999875 9999999999987 999999999987755 34 5678999999997654
Q ss_pred --hhhhcccccCCeeEEeecCCCCCCCcceEEeCCC--CccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCC
Q 043437 227 --LVTQMGSSIGGKFSYCLVPFLSSESSSKINFGSN--GVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDAS 302 (426)
Q Consensus 227 --l~~ql~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 302 (426)
+++| +.+..++||+||.+.......|+|+|||. +++.++ +.|+|+.. ..+|.|++++|+||++.+... ..
T Consensus 136 ~~l~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~-~~ 209 (317)
T cd06098 136 YNMVEQ-GLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGE-HTYVPVTR---KGYWQFEMGDVLIGGKSTGFC-AG 209 (317)
T ss_pred HHHHhc-CCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccc-eEEEecCc---CcEEEEEeCeEEECCEEeeec-CC
Confidence 2344 66778999999986422114799999993 455555 99999975 679999999999999876542 34
Q ss_pred CCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCC
Q 043437 303 EGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSD 382 (426)
Q Consensus 303 ~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~ 382 (426)
...++|||||+++++|++++++|. +.++ |+... .+|+|+|+|+|+.++|++++|+++..+
T Consensus 210 ~~~aivDTGTs~~~lP~~~~~~i~----------------~~~~-C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~~~~ 269 (317)
T cd06098 210 GCAAIADSGTSLLAGPTTIVTQIN----------------SAVD-CNSLS---SMPNVSFTIGGKTFELTPEQYILKVGE 269 (317)
T ss_pred CcEEEEecCCcceeCCHHHHHhhh----------------ccCC-ccccc---cCCcEEEEECCEEEEEChHHeEEeecC
Confidence 568999999999999998877663 2234 98653 689999999999999999999987643
Q ss_pred --CeEEEE-EEcC------CCcceechhhhccEEEEEECCCCEEEEee
Q 043437 383 --TSVCFT-FKGM------EGQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 383 --~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
...|++ |+.. +..||||+.|||++|+|||++++|||||+
T Consensus 270 ~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 270 GAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 357976 7643 24699999999999999999999999996
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=7.3e-55 Score=420.07 Aligned_cols=299 Identities=23% Similarity=0.382 Sum_probs=248.1
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCc--ccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCC
Q 043437 82 ISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTEC--YKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTE 159 (426)
Q Consensus 82 ~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C--~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~ 159 (426)
+..+..|+++|+||||+|+++|+|||||+++||++..|..| .+..++.|+|++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~----------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG----------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC-----------------
Confidence 45688999999999999999999999999999999999753 23677899999999999876
Q ss_pred CCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCCc----------h
Q 043437 160 ETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSVS----------L 227 (426)
Q Consensus 160 ~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----------l 227 (426)
|.|++.|++|+. .|.+++|+|++|+. .+ ++.||++..... .| ....+||||||++..+ |
T Consensus 66 --~~~~~~Yg~g~~-~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 136 (326)
T cd05487 66 --TEFTIHYASGTV-KGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNI 136 (326)
T ss_pred --EEEEEEeCCceE-EEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHH
Confidence 899999999985 59999999999986 66 588999987643 34 4578999999997654 5
Q ss_pred hhhcccccCCeeEEeecCCCCCCCcceEEeCC--CCccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCc
Q 043437 228 VTQMGSSIGGKFSYCLVPFLSSESSSKINFGS--NGVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGN 305 (426)
Q Consensus 228 ~~ql~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg--~~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 305 (426)
++| +.+.+++||+||.+.......|+|+||| .+++.++ +.|+|+.. ..+|.|.+++++|+++.+.. ..+..
T Consensus 137 ~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~-l~~~~~~~---~~~w~v~l~~i~vg~~~~~~--~~~~~ 209 (326)
T cd05487 137 MSQ-GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGD-FHYINTSK---TGFWQIQMKGVSVGSSTLLC--EDGCT 209 (326)
T ss_pred Hhc-CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCc-eEEEECCc---CceEEEEecEEEECCEEEec--CCCCE
Confidence 667 7788999999998653211579999999 3445454 99999875 67999999999999987754 34678
Q ss_pred EEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCC--C
Q 043437 306 IIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSD--T 383 (426)
Q Consensus 306 ~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~--~ 383 (426)
++|||||+++++|++++++|++++..... .+.+.+ +|+... .+|+|+|+|+|..++|++++|+++..+ +
T Consensus 210 aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~~~y~~-~C~~~~---~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~ 280 (326)
T cd05487 210 AVVDTGASFISGPTSSISKLMEALGAKER-----LGDYVV-KCNEVP---TLPDISFHLGGKEYTLSSSDYVLQDSDFSD 280 (326)
T ss_pred EEECCCccchhCcHHHHHHHHHHhCCccc-----CCCEEE-eccccC---CCCCEEEEECCEEEEeCHHHhEEeccCCCC
Confidence 99999999999999999999998865422 233434 598653 689999999999999999999987643 4
Q ss_pred eEEEE-EEcCC------CcceechhhhccEEEEEECCCCEEEEeeC
Q 043437 384 SVCFT-FKGME------GQSIYGNLAQANFLVGYDTKAKTVSFKPT 422 (426)
Q Consensus 384 ~~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 422 (426)
..|++ |+..+ +.||||++|||++|+|||++++|||||++
T Consensus 281 ~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 281 KLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 67975 76431 47999999999999999999999999986
No 11
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.2e-54 Score=413.94 Aligned_cols=289 Identities=41% Similarity=0.775 Sum_probs=239.8
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceeee
Q 043437 87 EYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSA 166 (426)
Q Consensus 87 ~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 166 (426)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------------------------Ceeee
Confidence 599999999999999999999999999987654 47889
Q ss_pred EeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCCCCCchhhhcccccCCeeEEeecCC
Q 043437 167 TYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGGGSVSLVTQMGSSIGGKFSYCLVPF 246 (426)
Q Consensus 167 ~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~~~~~~Fs~~l~~~ 246 (426)
.|++|+.+.|.+++|+|+||+. ..++++.|||+...++.+ ...+||||||+...+++.|+....+++||+||.+.
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig~~----~~~~~~~Fg~~~~~~~~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~ 113 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLGSS----DVVPGFAFGCGHDNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDR 113 (299)
T ss_pred EeCCCceEEEEEEEEEEEeCCC----CccCCEEEECCccCCCcc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEccCC
Confidence 9999998779999999999974 167899999999887655 47899999999999999998766778999999874
Q ss_pred CCCCCcceEEeCCCCccCCCceEEeecccCCC-CceEEEEEEEEEEcceeeeecC--CCCCcEEEccCCccccCcHHHHH
Q 043437 247 LSSESSSKINFGSNGVVSGTGVVTTPLVAKDP-DTFYFLTLESISVGKKKIHFDD--ASEGNIIIDSGTTLTFLPPDIVS 323 (426)
Q Consensus 247 ~~~~~~G~l~~Gg~~~~~~~~~~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~--~~~~~~iiDTGt~~~~lp~~~~~ 323 (426)
... ..|+|+|||.+...++ +.|+|++..+. ..+|.|+|++|+||++.+..+. .....++|||||+++++|+++++
T Consensus 114 ~~~-~~G~l~fGg~d~~~g~-l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 114 SSS-SSGYLSFGAAASVPAG-ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CCC-CCceEEeCCccccCCC-ceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHH
Confidence 323 5799999995444444 99999997643 5799999999999999876521 24568999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCccccccCCCC--CCCCeEEEEEc-cceEEeCCCceEEEc-CCCeEEEEEEcCC---Ccc
Q 043437 324 KLTSAVSDLIKADPISDPEGVLDLCYPYSSD--FKAPQITVHFS-GADVVLSPENTFIRT-SDTSVCFTFKGME---GQS 396 (426)
Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~l~f~f~-g~~~~l~~~~~~~~~-~~~~~C~~i~~~~---~~~ 396 (426)
+|.+++..+........+.+.++.|+...+. ..+|+|+|+|+ |++++|++++|++.. ..+..|+++...+ +.|
T Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ 271 (299)
T cd05472 192 ALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLS 271 (299)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCE
Confidence 9999998876432221233345569865322 37999999998 799999999999843 4457899977652 579
Q ss_pred eechhhhccEEEEEECCCCEEEEeeCCC
Q 043437 397 IYGNLAQANFLVGYDTKAKTVSFKPTDC 424 (426)
Q Consensus 397 ilG~~fl~~~y~vfD~~~~~igfa~~~c 424 (426)
|||+.|||++|+|||++++|||||+++|
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999999
No 12
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6e-54 Score=424.12 Aligned_cols=300 Identities=21% Similarity=0.315 Sum_probs=244.6
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCC
Q 043437 77 AQADIISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSC 156 (426)
Q Consensus 77 ~~~~~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c 156 (426)
..++.+..+.+|+++|+||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+|++..+
T Consensus 129 ~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~-------------- 194 (453)
T PTZ00147 129 NVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG-------------- 194 (453)
T ss_pred eeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC--------------
Confidence 344446788999999999999999999999999999999999986655788999999999999876
Q ss_pred CCCCCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC---CC-CCCCceeEeeCCCCCc------
Q 043437 157 STEETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG---TF-NENATGIVGLGGGSVS------ 226 (426)
Q Consensus 157 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s------ 226 (426)
+.|++.|++|+.. |.+++|+|+||+. +++ +.|+++....+ .+ ....+||||||++..+
T Consensus 195 -----~~f~i~Yg~Gsvs-G~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p 262 (453)
T PTZ00147 195 -----TKVEMNYVSGTVS-GFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDP 262 (453)
T ss_pred -----CEEEEEeCCCCEE-EEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCccccccCCC
Confidence 8999999999865 9999999999987 777 56888876543 12 4578999999998764
Q ss_pred ----hhhhcccccCCeeEEeecCCCCCCCcceEEeCC--CCccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecC
Q 043437 227 ----LVTQMGSSIGGKFSYCLVPFLSSESSSKINFGS--NGVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDD 300 (426)
Q Consensus 227 ----l~~ql~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg--~~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 300 (426)
|..| +.+..++||+||.+.+. ..|.|+||| ..++.++ +.|+|+.. ..+|.|.++ +.+++..
T Consensus 263 ~~~~L~~q-g~I~~~vFS~~L~~~~~--~~G~L~fGGiD~~ky~G~-l~y~pl~~---~~~W~V~l~-~~vg~~~----- 329 (453)
T PTZ00147 263 YVVELKNQ-NKIEQAVFTFYLPPEDK--HKGYLTIGGIEERFYEGP-LTYEKLNH---DLYWQVDLD-VHFGNVS----- 329 (453)
T ss_pred HHHHHHHc-CCCCccEEEEEecCCCC--CCeEEEECCcChhhcCCc-eEEEEcCC---CceEEEEEE-EEECCEe-----
Confidence 2334 56788999999986433 479999999 3445555 99999974 679999998 4777643
Q ss_pred CCCCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEc
Q 043437 301 ASEGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRT 380 (426)
Q Consensus 301 ~~~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~ 380 (426)
.....+||||||+++++|++++++|++++..... . ..+.+ ..+|+.. .+|+|+|.|+|..++|+|++|+.+.
T Consensus 330 ~~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~-~--~~~~y-~~~C~~~----~lP~~~f~f~g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 330 SEKANVIVDSGTSVITVPTEFLNKFVESLDVFKV-P--FLPLY-VTTCNNT----KLPTLEFRSPNKVYTLEPEYYLQPI 401 (453)
T ss_pred cCceeEEECCCCchhcCCHHHHHHHHHHhCCeec-C--CCCeE-EEeCCCC----CCCeEEEEECCEEEEECHHHheecc
Confidence 2367899999999999999999999998864321 1 12233 3459852 6899999999999999999999764
Q ss_pred CC--CeEEEE-EEcCC---CcceechhhhccEEEEEECCCCEEEEeeCC
Q 043437 381 SD--TSVCFT-FKGME---GQSIYGNLAQANFLVGYDTKAKTVSFKPTD 423 (426)
Q Consensus 381 ~~--~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~~igfa~~~ 423 (426)
.+ ...|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 32 357975 87653 579999999999999999999999999986
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.2e-54 Score=414.56 Aligned_cols=296 Identities=25% Similarity=0.451 Sum_probs=246.3
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCC
Q 043437 81 IISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEE 160 (426)
Q Consensus 81 ~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~ 160 (426)
.+..+..|+++|+||||+|++.|+|||||+++||+|..|..+.+..++.|+|++|+|++...
T Consensus 4 ~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~------------------ 65 (320)
T cd05488 4 TNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG------------------ 65 (320)
T ss_pred cccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC------------------
Confidence 35568889999999999999999999999999999999985333667899999999998775
Q ss_pred CceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCC-C-CCCCceeEeeCCCCCch----------h
Q 043437 161 TCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGT-F-NENATGIVGLGGGSVSL----------V 228 (426)
Q Consensus 161 ~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~sl----------~ 228 (426)
|.|.+.|++|+. .|.+++|+++|++. .++++.|||+....+. | ....+||||||++..+. +
T Consensus 66 -~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 138 (320)
T cd05488 66 -TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMI 138 (320)
T ss_pred -CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHH
Confidence 899999999986 59999999999987 8999999999877653 4 45789999999987653 2
Q ss_pred hhcccccCCeeEEeecCCCCCCCcceEEeCCCC--ccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcE
Q 043437 229 TQMGSSIGGKFSYCLVPFLSSESSSKINFGSNG--VVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNI 306 (426)
Q Consensus 229 ~ql~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg~~--~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 306 (426)
+| +.+.++.||+||.+... ..|.|+|||.+ ++.++ +.|+|+.. ..+|.|++++|+||++.+.. ....+
T Consensus 139 ~q-g~i~~~~FS~~L~~~~~--~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~vg~~~~~~---~~~~~ 208 (320)
T cd05488 139 NQ-GLLDEPVFSFYLGSSEE--DGGEATFGGIDESRFTGK-ITWLPVRR---KAYWEVELEKIGLGDEELEL---ENTGA 208 (320)
T ss_pred hc-CCCCCCEEEEEecCCCC--CCcEEEECCcCHHHcCCc-eEEEeCCc---CcEEEEEeCeEEECCEEecc---CCCeE
Confidence 34 66788999999987533 47999999943 44444 99999985 67999999999999987764 36789
Q ss_pred EEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCCeEE
Q 043437 307 IIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDTSVC 386 (426)
Q Consensus 307 iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~~~C 386 (426)
+|||||+++++|++++++|.+++..... ..+.+.++ |+... .+|+|+|+|+|++++||+++|+++.. ..|
T Consensus 209 ivDSGtt~~~lp~~~~~~l~~~~~~~~~----~~~~~~~~-C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~~--g~C 278 (320)
T cd05488 209 AIDTGTSLIALPSDLAEMLNAEIGAKKS----WNGQYTVD-CSKVD---SLPDLTFNFDGYNFTLGPFDYTLEVS--GSC 278 (320)
T ss_pred EEcCCcccccCCHHHHHHHHHHhCCccc----cCCcEEee-ccccc---cCCCEEEEECCEEEEECHHHheecCC--CeE
Confidence 9999999999999999999888854321 13344444 98653 68999999999999999999998643 469
Q ss_pred EE-EEcCC------CcceechhhhccEEEEEECCCCEEEEee
Q 043437 387 FT-FKGME------GQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 387 ~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
++ |...+ ..||||++|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 279 ISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 87 65431 4699999999999999999999999996
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6.1e-54 Score=413.74 Aligned_cols=302 Identities=26% Similarity=0.449 Sum_probs=248.5
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCc--ccCCCCCCCCCCCCccccccCCCcccCCcCCCCC
Q 043437 79 ADIISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTEC--YKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSC 156 (426)
Q Consensus 79 ~~~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C--~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c 156 (426)
.+.+..+..|+++|+||||+|++.|++||||+++||+|..|..| .+..++.|||++|+|++...
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~-------------- 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG-------------- 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC--------------
Confidence 45577889999999999999999999999999999999999732 12457889999999999876
Q ss_pred CCCCCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCCch-------
Q 043437 157 STEETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSVSL------- 227 (426)
Q Consensus 157 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl------- 227 (426)
|.|.+.|++|+. .|.+++|+++||+. .++++.||++..+.+ .| ....+||||||++..+.
T Consensus 69 -----~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~ 137 (329)
T cd05485 69 -----TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVF 137 (329)
T ss_pred -----eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHH
Confidence 899999999985 59999999999987 899999999987755 34 56789999999987652
Q ss_pred ---hhhcccccCCeeEEeecCCCCCCCcceEEeCCC--CccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCC
Q 043437 228 ---VTQMGSSIGGKFSYCLVPFLSSESSSKINFGSN--GVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDAS 302 (426)
Q Consensus 228 ---~~ql~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 302 (426)
.+| +.+.++.||+||.+.......|+|+|||. +++.++ +.|+|+.. ..+|.|++++++|+++.+. ..
T Consensus 138 ~~l~~q-g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~~~~i~v~~~~~~---~~ 209 (329)
T cd05485 138 YNMVNQ-KLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGN-FTYLPVTR---KGYWQFKMDSVSVGEGEFC---SG 209 (329)
T ss_pred HHHHhC-CCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccc-eEEEEcCC---ceEEEEEeeEEEECCeeec---CC
Confidence 344 56678999999986432214799999993 345444 99999975 7899999999999998765 34
Q ss_pred CCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCC
Q 043437 303 EGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSD 382 (426)
Q Consensus 303 ~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~ 382 (426)
...+||||||+++++|++++++|.+++... ....+.+.+ +|+... ++|+|+|+|+|++++|++++|+++...
T Consensus 210 ~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~~---~~p~i~f~fgg~~~~i~~~~yi~~~~~ 281 (329)
T cd05485 210 GCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PIIGGEYMV-NCSAIP---SLPDITFVLGGKSFSLTGKDYVLKVTQ 281 (329)
T ss_pred CcEEEEccCCcceeCCHHHHHHHHHHhCCc----cccCCcEEE-eccccc---cCCcEEEEECCEEeEEChHHeEEEecC
Confidence 568999999999999999999998887653 111333434 498643 579999999999999999999988653
Q ss_pred --CeEEEE-EEcC------CCcceechhhhccEEEEEECCCCEEEEee
Q 043437 383 --TSVCFT-FKGM------EGQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 383 --~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
...|++ |+.. ++.||||+.|||++|+|||++++|||||+
T Consensus 282 ~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 282 MGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 357986 7643 24699999999999999999999999985
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.1e-53 Score=416.64 Aligned_cols=302 Identities=20% Similarity=0.331 Sum_probs=242.2
Q ss_pred CccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCC
Q 043437 76 TAQADIISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTS 155 (426)
Q Consensus 76 ~~~~~~~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~ 155 (426)
....+.+..+.+|+++|+||||+|++.|+|||||+++||+|..|..+.|+.++.|+|++|+|++..+
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~------------- 193 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG------------- 193 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-------------
Confidence 3444557778899999999999999999999999999999999985444778899999999999876
Q ss_pred CCCCCCceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC---CC-CCCCceeEeeCCCCCc-----
Q 043437 156 CSTEETCEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG---TF-NENATGIVGLGGGSVS----- 226 (426)
Q Consensus 156 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s----- 226 (426)
+.|++.|++|+. .|.+++|+|+||+. +++ +.|+++..... .+ ....+||||||++..+
T Consensus 194 ------~~~~i~YG~Gsv-~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 194 ------TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred ------cEEEEEECCceE-EEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 899999999985 59999999999987 776 57888776532 23 4578999999998664
Q ss_pred -hhhhc---ccccCCeeEEeecCCCCCCCcceEEeCC--CCccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecC
Q 043437 227 -LVTQM---GSSIGGKFSYCLVPFLSSESSSKINFGS--NGVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDD 300 (426)
Q Consensus 227 -l~~ql---~~~~~~~Fs~~l~~~~~~~~~G~l~~Gg--~~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 300 (426)
++.|| +.+..++||+||.+.+. ..|.|+||| .+++.++ +.|+|+.. ..+|.|+++ +.+|....
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~--~~G~L~fGGiD~~~y~G~-L~y~pv~~---~~yW~I~l~-v~~G~~~~---- 329 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDV--HAGYLTIGGIEEKFYEGN-ITYEKLNH---DLYWQIDLD-VHFGKQTM---- 329 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCC--CCCEEEECCcCccccccc-eEEEEcCc---CceEEEEEE-EEECceec----
Confidence 22232 56788999999986433 479999999 3455555 99999975 679999998 66764432
Q ss_pred CCCCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEc
Q 043437 301 ASEGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRT 380 (426)
Q Consensus 301 ~~~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~ 380 (426)
....+++||||+++++|+++++++++++..... . ..+.+ ..+|+.. .+|+|+|.|+|.+++|+|++|+.+.
T Consensus 330 -~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~-~--~~~~y-~~~C~~~----~lP~i~F~~~g~~~~L~p~~Yi~~~ 400 (450)
T PTZ00013 330 -QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV-P--FLPFY-VTTCDNK----EMPTLEFKSANNTYTLEPEYYMNPL 400 (450)
T ss_pred -cccceEECCCCccccCCHHHHHHHHHHhCCeec-C--CCCeE-EeecCCC----CCCeEEEEECCEEEEECHHHheehh
Confidence 267899999999999999999999988864321 1 12233 3359752 6899999999999999999998754
Q ss_pred C--CCeEEEE-EEcCC---CcceechhhhccEEEEEECCCCEEEEeeCC
Q 043437 381 S--DTSVCFT-FKGME---GQSIYGNLAQANFLVGYDTKAKTVSFKPTD 423 (426)
Q Consensus 381 ~--~~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~~igfa~~~ 423 (426)
. ++..|++ |.+.+ +.||||++|||++|+|||++++|||||+++
T Consensus 401 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 401 LDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2 3457975 76643 579999999999999999999999999985
No 16
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.3e-51 Score=398.44 Aligned_cols=312 Identities=22% Similarity=0.419 Sum_probs=249.5
Q ss_pred eCCCCcE-EEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCC------------CCCCCC
Q 043437 94 IGTPPVE-ILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERT------------SCSTEE 160 (426)
Q Consensus 94 iGTP~q~-~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~------------~c~~~~ 160 (426)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|+..... .|.+ +
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~ 66 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-N 66 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC-C
Confidence 5788777 999999999999999974 4688999999999999876543 3422 3
Q ss_pred CceeeeE-eCCCCeeeeeEEEEEEEecCCCCCC---ceeceeeeeeeEecCC-CCCCCCceeEeeCCCCCchhhhcccc-
Q 043437 161 TCEYSAT-YGDRSFSNGNLAVETVTLGSTNGRP---AALRNIIFGCGHNDDG-TFNENATGIVGLGGGSVSLVTQMGSS- 234 (426)
Q Consensus 161 ~~~~~~~-Y~~g~~~~G~~~~D~v~ig~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~~~~sl~~ql~~~- 234 (426)
.|.|... |++|+.+.|++++|+|+|+..+++. ..++++.|||+..... .+....+||||||++.+|++.|+...
T Consensus 67 ~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 67 TCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred cCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhc
Confidence 5888665 7899888899999999998754432 4789999999988643 23355899999999999999997653
Q ss_pred -cCCeeEEeecCCCCCCCcceEEeCCCCccC-------CCceEEeecccCCC-CceEEEEEEEEEEcceeeeecC-----
Q 043437 235 -IGGKFSYCLVPFLSSESSSKINFGSNGVVS-------GTGVVTTPLVAKDP-DTFYFLTLESISVGKKKIHFDD----- 300 (426)
Q Consensus 235 -~~~~Fs~~l~~~~~~~~~G~l~~Gg~~~~~-------~~~~~~~p~~~~~~-~~~w~v~l~~i~v~~~~~~~~~----- 300 (426)
..++||+||.+.. . ..|.|+||+.+... ..++.|+||+.++. ..+|.|+|++|+||++.+.++.
T Consensus 147 ~~~~~FS~CL~~~~-~-~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~ 224 (362)
T cd05489 147 GVARKFALCLPSSP-G-GPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAN 224 (362)
T ss_pred CCCcceEEEeCCCC-C-CCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccc
Confidence 3589999998643 2 47999999943221 13499999997642 5799999999999999887532
Q ss_pred --CCCCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCC-CCCccccccCCC------CCCCCeEEEEEcc--ceE
Q 043437 301 --ASEGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDP-EGVLDLCYPYSS------DFKAPQITVHFSG--ADV 369 (426)
Q Consensus 301 --~~~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~C~~~~~------~~~~P~l~f~f~g--~~~ 369 (426)
.+.+++||||||++++||+++|++|.+++.+++........ ....+.|+.... ...+|+|+|+|+| +++
T Consensus 225 ~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~ 304 (362)
T cd05489 225 DRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNW 304 (362)
T ss_pred cccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEE
Confidence 24568999999999999999999999999988754322122 111257987421 2379999999986 999
Q ss_pred EeCCCceEEEcCCCeEEEEEEcCC----CcceechhhhccEEEEEECCCCEEEEeeC
Q 043437 370 VLSPENTFIRTSDTSVCFTFKGME----GQSIYGNLAQANFLVGYDTKAKTVSFKPT 422 (426)
Q Consensus 370 ~l~~~~~~~~~~~~~~C~~i~~~~----~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 422 (426)
+|++++|+++..++..|++|.+.+ ..||||+.|||++|++||.+++|||||+.
T Consensus 305 ~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 305 TIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999999987777899988653 46999999999999999999999999974
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.5e-51 Score=401.20 Aligned_cols=308 Identities=22% Similarity=0.356 Sum_probs=235.2
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceee
Q 043437 86 GEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYS 165 (426)
Q Consensus 86 ~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 165 (426)
..|+++|.||||+|+|.|+|||||+++||+|..|. +.++.|||++|+|++..+ |.|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~----~~~~~f~~~~SsT~~~~~-------------------~~~~ 58 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP----FIHTYFHRELSSTYRDLG-------------------KGVT 58 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc----cccccCCchhCcCcccCC-------------------ceEE
Confidence 36999999999999999999999999999998873 346789999999999987 8999
Q ss_pred eEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCC--CCCCceeEeeCCCCC------------chhhhc
Q 043437 166 ATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTF--NENATGIVGLGGGSV------------SLVTQM 231 (426)
Q Consensus 166 ~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~------------sl~~ql 231 (426)
+.|++|+.. |.+++|+|+||+... ..-.+.|+++.+....+ ....+||||||++.+ ++++|
T Consensus 59 i~Yg~Gs~~-G~~~~D~v~ig~~~~---~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q- 133 (364)
T cd05473 59 VPYTQGSWE-GELGTDLVSIPKGPN---VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ- 133 (364)
T ss_pred EEECcceEE-EEEEEEEEEECCCCc---cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc-
Confidence 999999875 999999999986310 11123355655544433 236799999999765 35666
Q ss_pred ccccCCeeEEeecCC----C---CCCCcceEEeCCC--CccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCC-
Q 043437 232 GSSIGGKFSYCLVPF----L---SSESSSKINFGSN--GVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDA- 301 (426)
Q Consensus 232 ~~~~~~~Fs~~l~~~----~---~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~- 301 (426)
+.+ .++||++|... + .....|.|+|||. .++.++ +.|+|+.. ..+|.|.+++|+|+++.+..+..
T Consensus 134 ~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~-l~~~p~~~---~~~~~v~l~~i~vg~~~~~~~~~~ 208 (364)
T cd05473 134 TGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGD-IWYTPIRE---EWYYEVIILKLEVGGQSLNLDCKE 208 (364)
T ss_pred cCC-ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCC-ceEEecCc---ceeEEEEEEEEEECCEeccccccc
Confidence 333 57999988531 1 1114799999993 445554 99999986 67999999999999988765321
Q ss_pred -CCCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCC--CCccccccCCCC--CCCCeEEEEEcc------ceEE
Q 043437 302 -SEGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPE--GVLDLCYPYSSD--FKAPQITVHFSG------ADVV 370 (426)
Q Consensus 302 -~~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~C~~~~~~--~~~P~l~f~f~g------~~~~ 370 (426)
....+||||||+++++|++++++|.+++.++.......+.. ....+|+..... ..+|+|+|+|+| .+++
T Consensus 209 ~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~ 288 (364)
T cd05473 209 YNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRIT 288 (364)
T ss_pred ccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEE
Confidence 12479999999999999999999999998875422211111 112359865321 258999999975 3689
Q ss_pred eCCCceEEEcC---CCeEEEE--EEcCCCcceechhhhccEEEEEECCCCEEEEeeCCCCC
Q 043437 371 LSPENTFIRTS---DTSVCFT--FKGMEGQSIYGNLAQANFLVGYDTKAKTVSFKPTDCSK 426 (426)
Q Consensus 371 l~~~~~~~~~~---~~~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c~~ 426 (426)
|+|++|+.... .+..|++ +.+..+.||||+.|||++|+|||++++|||||+++|.+
T Consensus 289 l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~ 349 (364)
T cd05473 289 ILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAE 349 (364)
T ss_pred ECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccc
Confidence 99999987643 2457975 43444679999999999999999999999999999974
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.7e-51 Score=383.10 Aligned_cols=258 Identities=31% Similarity=0.570 Sum_probs=217.7
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC-CCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCcee
Q 043437 86 GEYVMNISIGTPPVEILAIADTGSDLIWTQCK-PCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEY 164 (426)
Q Consensus 86 ~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~-~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 164 (426)
++|+++|.||||+|++.|++||||+++||+|. +|..| . |.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~-------------------c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------Q-------------------CDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------c-------------------Ccc
Confidence 57999999999999999999999999999984 67666 1 899
Q ss_pred eeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCC---CCCCceeEeeCCCCCchhhhcccc--cCCee
Q 043437 165 SATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTF---NENATGIVGLGGGSVSLVTQMGSS--IGGKF 239 (426)
Q Consensus 165 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~sl~~ql~~~--~~~~F 239 (426)
++.|++++.+.|.+++|+|+|+..++. ..++++.|||+....+.+ ....+||||||+...++++|+... .+++|
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~F 121 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVI 121 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceE
Confidence 999998877779999999999754322 267899999998776532 457899999999999999987642 37899
Q ss_pred EEeecCCCCCCCcceEEeCCCCccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEEEccCCccccCcH
Q 043437 240 SYCLVPFLSSESSSKINFGSNGVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNIIIDSGTTLTFLPP 319 (426)
Q Consensus 240 s~~l~~~~~~~~~G~l~~Gg~~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~ 319 (426)
|+||.+ . ..|.|+||+..++.++ +.|+|+...+...+|.|++.+|+||++... .....+||||||+++++|+
T Consensus 122 s~~l~~---~-~~g~l~~G~~~~~~g~-i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~---~~~~~~ivDTGTt~t~lp~ 193 (273)
T cd05475 122 GHCLSS---N-GGGFLFFGDDLVPSSG-VTWTPMRRESQKKHYSPGPASLLFNGQPTG---GKGLEVVFDSGSSYTYFNA 193 (273)
T ss_pred EEEccC---C-CCeEEEECCCCCCCCC-eeecccccCCCCCeEEEeEeEEEECCEECc---CCCceEEEECCCceEEcCC
Confidence 999976 2 4699999976555444 999999876445799999999999998543 4467899999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEcc----ceEEeCCCceEEEcCCCeEEEEEEcCC--
Q 043437 320 DIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSG----ADVVLSPENTFIRTSDTSVCFTFKGME-- 393 (426)
Q Consensus 320 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g----~~~~l~~~~~~~~~~~~~~C~~i~~~~-- 393 (426)
++| +|+|+|+|++ ++++|++++|++....+..|+++....
T Consensus 194 ~~y----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~ 239 (273)
T cd05475 194 QAY----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEI 239 (273)
T ss_pred ccc----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCc
Confidence 865 4899999987 699999999999876677899965431
Q ss_pred ---CcceechhhhccEEEEEECCCCEEEEeeCCC
Q 043437 394 ---GQSIYGNLAQANFLVGYDTKAKTVSFKPTDC 424 (426)
Q Consensus 394 ---~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c 424 (426)
+.||||+.|||++|++||++++|||||+++|
T Consensus 240 ~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 240 GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 4699999999999999999999999999999
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.4e-49 Score=370.74 Aligned_cols=252 Identities=48% Similarity=0.865 Sum_probs=216.4
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceeee
Q 043437 87 EYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSA 166 (426)
Q Consensus 87 ~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 166 (426)
+|+++|+||||+|++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999975 36778
Q ss_pred EeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCC-CCCCceeEeeCCCCCchhhhcccccCCeeEEeecC
Q 043437 167 TYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTF-NENATGIVGLGGGSVSLVTQMGSSIGGKFSYCLVP 245 (426)
Q Consensus 167 ~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~sl~~ql~~~~~~~Fs~~l~~ 245 (426)
.|++|+...|.+++|+|+|++.+ ..++++.|||+....+ + ....+||||||+...+++.|+.... ++||+||.+
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~ 110 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVP 110 (265)
T ss_pred EeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccC
Confidence 99998888899999999999852 2578999999998876 4 5789999999999999999986545 899999986
Q ss_pred CC-CCCCcceEEeCCCCccCCCceEEeecccCC-CCceEEEEEEEEEEcceeeeecC-------CCCCcEEEccCCcccc
Q 043437 246 FL-SSESSSKINFGSNGVVSGTGVVTTPLVAKD-PDTFYFLTLESISVGKKKIHFDD-------ASEGNIIIDSGTTLTF 316 (426)
Q Consensus 246 ~~-~~~~~G~l~~Gg~~~~~~~~~~~~p~~~~~-~~~~w~v~l~~i~v~~~~~~~~~-------~~~~~~iiDTGt~~~~ 316 (426)
.. .. ..|+|+|||.+......+.|+|++.++ ...+|.|++++|+|+++.+.++. .....+||||||++++
T Consensus 111 ~~~~~-~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~ 189 (265)
T cd05476 111 HDDTG-GSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTY 189 (265)
T ss_pred CCCCC-CCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceE
Confidence 42 22 579999999333222349999999753 25799999999999998875321 4567899999999999
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEc-cceEEeCCCceEEEcCCCeEEEEEEcC--C
Q 043437 317 LPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFS-GADVVLSPENTFIRTSDTSVCFTFKGM--E 393 (426)
Q Consensus 317 lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~--~ 393 (426)
+|++++ |+|+|+|+ |+++.|++++|+++...+..|+++... +
T Consensus 190 lp~~~~-----------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~ 234 (265)
T cd05476 190 LPDPAY-----------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSSG 234 (265)
T ss_pred cCcccc-----------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCCC
Confidence 998876 89999999 799999999999987777899997765 4
Q ss_pred CcceechhhhccEEEEEECCCCEEEEeeCCC
Q 043437 394 GQSIYGNLAQANFLVGYDTKAKTVSFKPTDC 424 (426)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c 424 (426)
+.||||++|||++|++||++++|||||+++|
T Consensus 235 ~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 235 GVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 7899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.2e-49 Score=375.61 Aligned_cols=264 Identities=27% Similarity=0.358 Sum_probs=218.3
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceeeeE
Q 043437 88 YVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSAT 167 (426)
Q Consensus 88 Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~~ 167 (426)
|+++|+||||+|++.|+|||||+++||+|..|..|.+..++.|++++|+|++... .+.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~------------------~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP------------------GATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC------------------CcEEEEE
Confidence 8999999999999999999999999999999999987788899999999998753 2899999
Q ss_pred eCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCC-CC-CCCCceeEeeCCCCCchh---------hhccc-cc
Q 043437 168 YGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDG-TF-NENATGIVGLGGGSVSLV---------TQMGS-SI 235 (426)
Q Consensus 168 Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl~---------~ql~~-~~ 235 (426)
|++|+...|.+++|+|+||+. +++++.||+++.... .+ ....+||||||++..+.. .++.. ..
T Consensus 63 Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~ 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc
Confidence 999986669999999999987 899999999998776 33 568999999999766432 22211 12
Q ss_pred CCeeEEeecCCCCCCCcceEEeCCC--CccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEEEccCCc
Q 043437 236 GGKFSYCLVPFLSSESSSKINFGSN--GVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNIIIDSGTT 313 (426)
Q Consensus 236 ~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~ 313 (426)
.+.||+||.+ . ..|+|+|||. .++.++ +.|+|+... ..+|.|++++|+||++.... .....++|||||+
T Consensus 138 ~~~Fs~~l~~---~-~~G~l~fGg~D~~~~~g~-l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~--~~~~~~iiDSGTs 208 (278)
T cd06097 138 APLFTADLRK---A-APGFYTFGYIDESKYKGE-ISWTPVDNS--SGFWQFTSTSYTVGGDAPWS--RSGFSAIADTGTT 208 (278)
T ss_pred CceEEEEecC---C-CCcEEEEeccChHHcCCc-eEEEEccCC--CcEEEEEEeeEEECCcceee--cCCceEEeecCCc
Confidence 5899999975 2 4799999993 345555 999999864 57999999999999874433 4578899999999
Q ss_pred cccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCCeEEEEEEcCC
Q 043437 314 LTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDTSVCFTFKGME 393 (426)
Q Consensus 314 ~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~ 393 (426)
++++|++++++|.+++.+..... ..+.+.+ +|.. .+|+|+|+|
T Consensus 209 ~~~lP~~~~~~l~~~l~g~~~~~--~~~~~~~-~C~~-----~~P~i~f~~----------------------------- 251 (278)
T cd06097 209 LILLPDAIVEAYYSQVPGAYYDS--EYGGWVF-PCDT-----TLPDLSFAV----------------------------- 251 (278)
T ss_pred hhcCCHHHHHHHHHhCcCCcccC--CCCEEEE-ECCC-----CCCCEEEEE-----------------------------
Confidence 99999999999998884322111 1233334 4884 379999999
Q ss_pred CcceechhhhccEEEEEECCCCEEEEee
Q 043437 394 GQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
.||||++|||++|+|||++++|||||+
T Consensus 252 -~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.9e-49 Score=381.78 Aligned_cols=294 Identities=28% Similarity=0.536 Sum_probs=247.3
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCc-ccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceee
Q 043437 87 EYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTEC-YKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYS 165 (426)
Q Consensus 87 ~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C-~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 165 (426)
+|+++|+||||+|+++|++||||+++||++..|..| .+.....|++++|+|++... +.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~-------------------~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG-------------------KPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-------------------EEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-------------------eeee
Confidence 599999999999999999999999999999999987 55788999999999999887 8899
Q ss_pred eEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCC-C-CCCCceeEeeCCCCC-------chhhhc---cc
Q 043437 166 ATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGT-F-NENATGIVGLGGGSV-------SLVTQM---GS 233 (426)
Q Consensus 166 ~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~-------sl~~ql---~~ 233 (426)
+.|++|+ .+|.+++|+|+|++. .++++.||++....+. + ....+||||||++.. +++.+| +.
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~ 135 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGL 135 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTS
T ss_pred eeccCcc-cccccccceEeeeec-----cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcc
Confidence 9999999 559999999999997 9999999999997553 3 678999999997432 344433 56
Q ss_pred ccCCeeEEeecCCCCCCCcceEEeCC--CCccCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEEEccC
Q 043437 234 SIGGKFSYCLVPFLSSESSSKINFGS--NGVVSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNIIIDSG 311 (426)
Q Consensus 234 ~~~~~Fs~~l~~~~~~~~~G~l~~Gg--~~~~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTG 311 (426)
+.+++||++|.+.. . ..|.|+||| ..++.++ +.|+|+.. ..+|.+.+++|.++++.... .....++||||
T Consensus 136 i~~~~fsl~l~~~~-~-~~g~l~~Gg~d~~~~~g~-~~~~~~~~---~~~w~v~~~~i~i~~~~~~~--~~~~~~~~Dtg 207 (317)
T PF00026_consen 136 ISSNVFSLYLNPSD-S-QNGSLTFGGYDPSKYDGD-LVWVPLVS---SGYWSVPLDSISIGGESVFS--SSGQQAILDTG 207 (317)
T ss_dssp SSSSEEEEEEESTT-S-SEEEEEESSEEGGGEESE-EEEEEBSS---TTTTEEEEEEEEETTEEEEE--EEEEEEEEETT
T ss_pred ccccccceeeeecc-c-ccchheeeccccccccCc-eeccCccc---cccccccccccccccccccc--ccceeeecccc
Confidence 78999999998865 2 579999999 4455554 99999994 88999999999999983322 33568999999
Q ss_pred CccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCC--eEEEE-
Q 043437 312 TTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDT--SVCFT- 388 (426)
Q Consensus 312 t~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~--~~C~~- 388 (426)
++++++|++++++|++++...... ..+.+ +|.... .+|.++|.|++.+++|++++|+.+.... ..|+.
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~~-----~~~~~-~c~~~~---~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~ 278 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYSD-----GVYSV-PCNSTD---SLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLG 278 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEEC-----SEEEE-ETTGGG---GSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEES
T ss_pred cccccccchhhHHHHhhhcccccc-----eeEEE-eccccc---ccceEEEeeCCEEEEecchHhcccccccccceeEee
Confidence 999999999999999999877543 33334 488653 6799999999999999999999987653 38977
Q ss_pred EEc---C--CCcceechhhhccEEEEEECCCCEEEEeeC
Q 043437 389 FKG---M--EGQSIYGNLAQANFLVGYDTKAKTVSFKPT 422 (426)
Q Consensus 389 i~~---~--~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 422 (426)
|.. . ...+|||.+|||++|++||++++|||||+|
T Consensus 279 i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 279 IQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred eecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 776 2 268999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.7e-47 Score=360.81 Aligned_cols=268 Identities=25% Similarity=0.435 Sum_probs=223.6
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceeee
Q 043437 87 EYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSA 166 (426)
Q Consensus 87 ~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 166 (426)
.|+++|.||||+|++.|++||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 59999999999999999999999999995 3568
Q ss_pred EeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCCCCC-----------chhhhcc---
Q 043437 167 TYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGGGSV-----------SLVTQMG--- 232 (426)
Q Consensus 167 ~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-----------sl~~ql~--- 232 (426)
.|++|+...|.+++|+|++++. .++++.|||++.. ...+||||||+... +++.||.
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~-----~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANST-----SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecC-----CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 8999776679999999999987 8999999999984 35789999999776 4666653
Q ss_pred cccCCeeEEeecCCCCCCCcceEEeCCC--CccCCCceEEeecccCCC---CceEEEEEEEEEEcceeeeecC-CCCCcE
Q 043437 233 SSIGGKFSYCLVPFLSSESSSKINFGSN--GVVSGTGVVTTPLVAKDP---DTFYFLTLESISVGKKKIHFDD-ASEGNI 306 (426)
Q Consensus 233 ~~~~~~Fs~~l~~~~~~~~~G~l~~Gg~--~~~~~~~~~~~p~~~~~~---~~~w~v~l~~i~v~~~~~~~~~-~~~~~~ 306 (426)
.+.++.||+||.+... ..|.|+|||. +++.++ +.|+|+...+. ..+|.|++++|+|+++.+..+. .....+
T Consensus 105 ~i~~~~Fsl~l~~~~~--~~g~l~~Gg~d~~~~~g~-~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~ 181 (295)
T cd05474 105 LIKKNAYSLYLNDLDA--STGSILFGGVDTAKYSGD-LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPA 181 (295)
T ss_pred cccceEEEEEeCCCCC--CceeEEEeeeccceeece-eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccE
Confidence 4578999999987533 4799999993 455554 99999997642 3799999999999998754211 457899
Q ss_pred EEccCCccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcC----C
Q 043437 307 IIDSGTTLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTS----D 382 (426)
Q Consensus 307 iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~----~ 382 (426)
+|||||++++||.+++++|.+++.+..... ...+ ..+|+... . |+|+|+|+|++++||+++|+++.. .
T Consensus 182 iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---~~~~-~~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~ 253 (295)
T cd05474 182 LLDSGTTLTYLPSDIVDAIAKQLGATYDSD---EGLY-VVDCDAKD---D-GSLTFNFGGATISVPLSDLVLPASTDDGG 253 (295)
T ss_pred EECCCCccEeCCHHHHHHHHHHhCCEEcCC---CcEE-EEeCCCCC---C-CEEEEEECCeEEEEEHHHhEeccccCCCC
Confidence 999999999999999999999998765432 2333 34599764 3 999999999999999999998774 2
Q ss_pred CeEEE-EEEcCC-CcceechhhhccEEEEEECCCCEEEEeeC
Q 043437 383 TSVCF-TFKGME-GQSIYGNLAQANFLVGYDTKAKTVSFKPT 422 (426)
Q Consensus 383 ~~~C~-~i~~~~-~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 422 (426)
+..|+ +|.+.+ +.||||++|||++|++||++++|||||++
T Consensus 254 ~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 254 DGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 56785 588876 78999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.4e-44 Score=342.21 Aligned_cols=268 Identities=34% Similarity=0.613 Sum_probs=222.3
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCC--CCCCCCCccccccCCCcccCCcCCCCCCCCCCceee
Q 043437 88 YVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPF--FDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYS 165 (426)
Q Consensus 88 Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~--y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 165 (426)
|+++|.||||+|++.|+|||||+++||+|..|..|.++.... |++..|+++.... |.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~-------------------~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTG-------------------CTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCC-------------------CEEE
Confidence 789999999999999999999999999999999886665555 7888888887665 9999
Q ss_pred eEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCC-CCCCceeEeeCCCC------Cchhhhccc---cc
Q 043437 166 ATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTF-NENATGIVGLGGGS------VSLVTQMGS---SI 235 (426)
Q Consensus 166 ~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~------~sl~~ql~~---~~ 235 (426)
+.|++|... |.++.|+|+|++. .++++.|||+......+ ....+||||||+.. .+++.|+.. +.
T Consensus 62 ~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~ 135 (283)
T cd05471 62 ITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLIS 135 (283)
T ss_pred EEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCC
Confidence 999998776 9999999999997 89999999999987644 57899999999988 667777654 57
Q ss_pred CCeeEEeecCCC-CCCCcceEEeCCCCc--cCCCceEEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEEEccCC
Q 043437 236 GGKFSYCLVPFL-SSESSSKINFGSNGV--VSGTGVVTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNIIIDSGT 312 (426)
Q Consensus 236 ~~~Fs~~l~~~~-~~~~~G~l~~Gg~~~--~~~~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt 312 (426)
+++||+||.+.. .. ..|.|+|||.+. +.++ +.|+|+... ...+|.|.+++|.|+++... .......++|||||
T Consensus 136 ~~~Fs~~l~~~~~~~-~~g~l~~Gg~d~~~~~~~-~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~-~~~~~~~~iiDsGt 211 (283)
T cd05471 136 SPVFSFYLGRDGDGG-NGGELTFGGIDPSKYTGD-LTYTPVVSN-GPGYWQVPLDGISVGGKSVI-SSSGGGGAIVDSGT 211 (283)
T ss_pred CCEEEEEEcCCCCCC-CCCEEEEcccCccccCCc-eEEEecCCC-CCCEEEEEeCeEEECCceee-ecCCCcEEEEecCC
Confidence 899999998752 12 579999999433 3444 999999975 36799999999999987311 11568899999999
Q ss_pred ccccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCCeEEEEEEcC
Q 043437 313 TLTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDTSVCFTFKGM 392 (426)
Q Consensus 313 ~~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~ 392 (426)
++++||++++++|++++.+..... ...+.. .|.... .+|+|+|+|
T Consensus 212 ~~~~lp~~~~~~l~~~~~~~~~~~---~~~~~~-~~~~~~---~~p~i~f~f---------------------------- 256 (283)
T cd05471 212 SLIYLPSSVYDAILKALGAAVSSS---DGGYGV-DCSPCD---TLPDITFTF---------------------------- 256 (283)
T ss_pred CCEeCCHHHHHHHHHHhCCccccc---CCcEEE-eCcccC---cCCCEEEEE----------------------------
Confidence 999999999999999998776431 112222 244332 789999999
Q ss_pred CCcceechhhhccEEEEEECCCCEEEEee
Q 043437 393 EGQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 393 ~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
.+|||++|||++|++||+++++||||+
T Consensus 257 --~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 699999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.6e-31 Score=229.49 Aligned_cols=161 Identities=47% Similarity=0.866 Sum_probs=132.2
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCC--CCCC-CCCcee
Q 043437 88 YVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERT--SCST-EETCEY 164 (426)
Q Consensus 88 Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~--~c~~-~~~~~~ 164 (426)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.+.|+++.|...+.. .|.. ++.|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999998 46889999999999999999999877753 3433 578999
Q ss_pred eeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCCCCCchhhhcccccCCeeEEeec
Q 043437 165 SATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGGGSVSLVTQMGSSIGGKFSYCLV 244 (426)
Q Consensus 165 ~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~~~~~~Fs~~l~ 244 (426)
.+.|.+++.+.|.+++|+|+++..+++...+.++.|||+....+.+ ...+||||||+.+.||+.|++....++|||||.
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~ 150 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF-YGADGILGLGRGPLSLPSQLASSSGNKFSYCLP 150 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS-TTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC-cCCCcccccCCCcccHHHHHHHhcCCeEEEECC
Confidence 9999999999999999999999875555688999999999998755 589999999999999999997778899999999
Q ss_pred CCCCCCCcceEEeCC
Q 043437 245 PFLSSESSSKINFGS 259 (426)
Q Consensus 245 ~~~~~~~~G~l~~Gg 259 (426)
+.+.. ..|.|+||+
T Consensus 151 ~~~~~-~~g~l~fG~ 164 (164)
T PF14543_consen 151 SSSPS-SSGFLSFGD 164 (164)
T ss_dssp S-SSS-SEEEEEECS
T ss_pred CCCCC-CCEEEEeCc
Confidence 83233 689999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.92 E-value=1.6e-24 Score=174.71 Aligned_cols=106 Identities=37% Similarity=0.689 Sum_probs=95.8
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCC-CCCCCCccccccCCCcccCCcCCCCCCCCCCceeeeEe
Q 043437 90 MNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFF-DPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSATY 168 (426)
Q Consensus 90 ~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y-~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~~Y 168 (426)
++|.||||+|++.|+|||||+++||+|..|..|.++.++.| +|+.|++++... |.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~-------------------~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG-------------------CTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC-------------------cEEEEEe
Confidence 47999999999999999999999999999998876777777 999999998876 8999999
Q ss_pred CCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCC--CCCCceeEee
Q 043437 169 GDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTF--NENATGIVGL 220 (426)
Q Consensus 169 ~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL 220 (426)
++|+.. |.++.|+|+|++. .++++.|||++...+.+ ....+|||||
T Consensus 62 ~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCCccccccccccccCC
Confidence 999866 9999999999987 89999999999997753 5678999997
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=3.1e-24 Score=185.24 Aligned_cols=141 Identities=40% Similarity=0.711 Sum_probs=113.2
Q ss_pred eEEEEEEEEEEcceeeeecCC------CCCcEEEccCCccccCcHHHHHHHHHHHHhhccCCCC---CCCCCCccccccC
Q 043437 281 FYFLTLESISVGKKKIHFDDA------SEGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIKADPI---SDPEGVLDLCYPY 351 (426)
Q Consensus 281 ~w~v~l~~i~v~~~~~~~~~~------~~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~C~~~ 351 (426)
+|.|+|++|+||++.+.++.. ..++++|||||++++||+++|+++.+++.+++..... ......++.|++.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 589999999999999988652 4689999999999999999999999999999875531 2345567789988
Q ss_pred CC------CCCCCeEEEEEc-cceEEeCCCceEEEcCCCeEEEEEEcC----CCcceechhhhccEEEEEECCCCEEEEe
Q 043437 352 SS------DFKAPQITVHFS-GADVVLSPENTFIRTSDTSVCFTFKGM----EGQSIYGNLAQANFLVGYDTKAKTVSFK 420 (426)
Q Consensus 352 ~~------~~~~P~l~f~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~----~~~~ilG~~fl~~~y~vfD~~~~~igfa 420 (426)
.. ...+|+|+|+|. |++++|++++|++...++..|++|.++ ++..|||..+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 65 247999999999 699999999999999888999998877 3789999999999999999999999999
Q ss_pred e
Q 043437 421 P 421 (426)
Q Consensus 421 ~ 421 (426)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 7
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.23 E-value=4.2e-06 Score=65.03 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=67.8
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceeee
Q 043437 87 EYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSA 166 (426)
Q Consensus 87 ~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 166 (426)
.|++++.|+ +++++++||||++.+|+.......+. . ... . .....+
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~-----~-------~~~-~-------------------~~~~~~ 47 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG-----L-------PLT-L-------------------GGKVTV 47 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC-----C-------Ccc-C-------------------CCcEEE
Confidence 589999999 79999999999999999765322220 0 000 0 145567
Q ss_pred EeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCC
Q 043437 167 TYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGG 222 (426)
Q Consensus 167 ~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 222 (426)
...+|.........+.+++|+. .++++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc----CCceEeChHH
Confidence 7778876656677999999997 888888887766532 5789999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.27 E-value=0.0013 Score=53.46 Aligned_cols=97 Identities=9% Similarity=0.167 Sum_probs=64.9
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCc
Q 043437 83 SALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETC 162 (426)
Q Consensus 83 ~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~ 162 (426)
..++.|++++.|. ++++.++||||++.+-+....-... ..++.. . ..
T Consensus 7 ~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~------~-------------------~~ 53 (121)
T TIGR02281 7 DGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNR------L-------------------GY 53 (121)
T ss_pred cCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCccc------C-------------------Cc
Confidence 3578899999998 7899999999999998855421110 011111 0 02
Q ss_pred eeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCC
Q 043437 163 EYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGG 222 (426)
Q Consensus 163 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 222 (426)
...+.=..|......+.-|.+++|+. .++|+.+.++.... ..+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~~-----~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGGA-----LSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCCc-----CCceEcCHHH
Confidence 33444455655545678999999998 88999977764321 2379999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.90 E-value=0.0083 Score=45.58 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=56.4
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCceeeeEeC
Q 043437 90 MNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEYSATYG 169 (426)
Q Consensus 90 ~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~~Y~ 169 (426)
+++.|+ .+++++++|||++.+.+...-.... ...+.... ....+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l------~~~~~~~~-------------------------~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKL------GLKPRPKS-------------------------VPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHc------CCCCcCCc-------------------------eeEEEEeC
Confidence 467788 7899999999999888854432211 00111000 12333444
Q ss_pred CCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeC
Q 043437 170 DRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLG 221 (426)
Q Consensus 170 ~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 221 (426)
+|.........+.+++|+. .+.++.|-+... ....+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC-----CCCCEEEeCCc
Confidence 5555545566779999987 888888776662 24678999974
No 30
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.70 E-value=0.3 Score=46.73 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=59.2
Q ss_pred EEEEEEeCCCC----cEE-EEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCc
Q 043437 88 YVMNISIGTPP----VEI-LAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETC 162 (426)
Q Consensus 88 Y~~~i~iGTP~----q~~-~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~ 162 (426)
-++.|+|=-|. |++ +|+|||||.-+=|..+.-..- -.+..-...+ .-..+. +|
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~---l~~~Lp~~t~-~g~~la----EC-------------- 81 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS---LAGSLPQQTG-GGAPLA----EC-------------- 81 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh---hhccCCcccC-CCcchh----hh--------------
Confidence 45667765553 677 799999999887755521000 0000111111 111110 11
Q ss_pred eeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeee----------EecCC---CCCCCCceeEeeCCC
Q 043437 163 EYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCG----------HNDDG---TFNENATGIVGLGGG 223 (426)
Q Consensus 163 ~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~----------~~~~~---~~~~~~~GilGLg~~ 223 (426)
..|++|..+ |-+-+-.|+||+.... .++-|.++-. ..... ......+||||+|.-
T Consensus 82 ---~~F~sgytW-GsVr~AdV~igge~A~--~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 ---AQFASGYTW-GSVRTADVTIGGETAS--SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ---hhccCcccc-cceEEEEEEEcCeecc--ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 457888888 9999999999997222 3333333321 11110 114578999999964
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.17 E-value=0.064 Score=43.78 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=23.4
Q ss_pred CcceechhhhccEEEEEECCCCEEEE
Q 043437 394 GQSIYGNLAQANFLVGYDTKAKTVSF 419 (426)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~~igf 419 (426)
...|||..||+.+-.+.|+.+++|-|
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 56899999999999999999998853
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.13 E-value=0.17 Score=41.30 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=57.0
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCCcee
Q 043437 85 LGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEETCEY 164 (426)
Q Consensus 85 ~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 164 (426)
...+++++.|+ ++++.+++|||++.+++...-+..+.-. .... ..+
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~lgl~------~~~~--------------------------~~~ 59 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEKCGLM------RLID--------------------------KRF 59 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHHcCCc------cccC--------------------------cce
Confidence 45589999999 8999999999999999965543333100 0000 112
Q ss_pred e-eEeC-CCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCC
Q 043437 165 S-ATYG-DRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGG 222 (426)
Q Consensus 165 ~-~~Y~-~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 222 (426)
. ...+ ++....|..-.+.+.+++. ..+ ..|.+... ...|+|||+-+
T Consensus 60 ~~~~~g~g~~~~~g~~~~~~l~i~~~-----~~~-~~~~Vl~~------~~~d~ILG~d~ 107 (124)
T cd05479 60 QGIAKGVGTQKILGRIHLAQVKIGNL-----FLP-CSFTVLED------DDVDFLIGLDM 107 (124)
T ss_pred EEEEecCCCcEEEeEEEEEEEEECCE-----Eee-eEEEEECC------CCcCEEecHHH
Confidence 1 1223 2233446677788999986 443 55544422 35789999863
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.02 E-value=0.1 Score=45.51 Aligned_cols=103 Identities=11% Similarity=0.166 Sum_probs=69.4
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCcccCCCCCCCCCCCCccccccCCCcccCCcCCCCCCCCCC
Q 043437 82 ISALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTECYKQAAPFFDPEQSSTYKDLSCDSRQCTAYERTSCSTEET 161 (426)
Q Consensus 82 ~~~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~ 161 (426)
...+|-|+++..|- +|++.+++|||-+.+-+.... ...-.|+.....
T Consensus 100 k~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~d------A~RlGid~~~l~------------------------- 146 (215)
T COG3577 100 KSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEED------ARRLGIDLNSLD------------------------- 146 (215)
T ss_pred ecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHH------HHHhCCCccccC-------------------------
Confidence 45688999999999 899999999999998886553 112234433221
Q ss_pred ceeeeEeCCCCeeeeeEEEEEEEecCCCCCCceeceeeeeeeEecCCCCCCCCceeEeeCCCCCchhhhcc
Q 043437 162 CEYSATYGDRSFSNGNLAVETVTLGSTNGRPAALRNIIFGCGHNDDGTFNENATGIVGLGGGSVSLVTQMG 232 (426)
Q Consensus 162 ~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~ 232 (426)
.++.+.-..|......+-.|.|.||+. .++|+.=-++... ....-+|||+ |+.+++
T Consensus 147 y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~A~V~~~g-----~L~~sLLGMS-----fL~rL~ 202 (215)
T COG3577 147 YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVDAMVAEDG-----ALDESLLGMS-----FLNRLS 202 (215)
T ss_pred CceEEEccCCccccceEEeeeEEEccE-----EEcCchhheecCC-----ccchhhhhHH-----HHhhcc
Confidence 456666678877657788999999997 7776654443332 1233466665 455543
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.31 E-value=0.1 Score=39.96 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 043437 88 YVMNISIGTPPVEILAIADTGSDLIWTQCKP 118 (426)
Q Consensus 88 Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~ 118 (426)
|++++.|+ ++++.+++||||+.+++..+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 899999999999999996653
No 35
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.26 E-value=0.29 Score=40.51 Aligned_cols=97 Identities=23% Similarity=0.307 Sum_probs=54.9
Q ss_pred CCcEEEccCCccccCcHHHHHHHHHHHHhhcc-CCC---CCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEE
Q 043437 303 EGNIIIDSGTTLTFLPPDIVSKLTSAVSDLIK-ADP---ISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFI 378 (426)
Q Consensus 303 ~~~~iiDTGt~~~~lp~~~~~~i~~~~~~~~~-~~~---~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~ 378 (426)
...++||||.+-.++..+...++ +-... ... ........ .|. ...+.+.+.++|..+..... ++
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~----~l~~~~l~~~~~V~~~g~~~-~~~-----~~~~~~~~~i~g~~~~~dl~--vl 99 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKL----GLPLEPLPRPIVVSAPGGSI-NCE-----GVCPDVPLSIQGHEFVVDLL--VL 99 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhc----CCEEEEccCeeEEecccccc-ccc-----ceeeeEEEEECCeEEEeeeE--Ee
Confidence 34579999999999998877654 11110 000 00000000 011 02344555555433322111 11
Q ss_pred EcCCCeEEEEEEcCCCcceechhhhccEEEEEECCCCEEEEeeC
Q 043437 379 RTSDTSVCFTFKGMEGQSIYGNLAQANFLVGYDTKAKTVSFKPT 422 (426)
Q Consensus 379 ~~~~~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 422 (426)
+. .+-..|||.+||+.+...-|+.+++|-|...
T Consensus 100 ~l-----------~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 100 DL-----------GGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred cc-----------cceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 11 1246999999999999999999999999753
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.56 E-value=0.46 Score=34.52 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC
Q 043437 84 ALGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCT 120 (426)
Q Consensus 84 ~~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~ 120 (426)
..+.+++.+.|| ++.+.+++|||++...|....+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 457899999999 79999999999999998766543
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.50 E-value=2.1 Score=32.25 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.7
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 043437 91 NISIGTPPVEILAIADTGSDLIWTQCKP 118 (426)
Q Consensus 91 ~i~iGTP~q~~~~~~DTGS~~~Wv~~~~ 118 (426)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 46676 799999999999999996553
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=86.58 E-value=1 Score=34.78 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=23.9
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCC
Q 043437 89 VMNISIGTPPVEILAIADTGSDLIWTQCKP 118 (426)
Q Consensus 89 ~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~ 118 (426)
+.+|.|. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5678888 789999999999999987653
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=85.59 E-value=4.1 Score=32.12 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=21.3
Q ss_pred CcceechhhhccEEEEEECCCCEE
Q 043437 394 GQSIYGNLAQANFLVGYDTKAKTV 417 (426)
Q Consensus 394 ~~~ilG~~fl~~~y~vfD~~~~~i 417 (426)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 578999999999999999988753
No 40
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=81.22 E-value=3.6 Score=33.31 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=27.6
Q ss_pred CceEEEEEEEEEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 279 DTFYFLTLESISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 279 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
.++|.++ +.|||++.. +++|||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~--------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR--------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE--------EEEECCCCcEEcCHHHHHHc
Confidence 4556544 457887554 59999999999999988776
No 41
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=79.07 E-value=2.3 Score=37.52 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=54.1
Q ss_pred CCcEEEccCCccccCcHHHH-HHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcC
Q 043437 303 EGNIIIDSGTTLTFLPPDIV-SKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTS 381 (426)
Q Consensus 303 ~~~~iiDTGt~~~~lp~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~ 381 (426)
...+++|||.+.-.....+. +.+++..........+.+....+. ...+.+.+.++|..|.+|-- ++.+
T Consensus 20 ~~~~~vDTGAt~C~~~~~iiP~e~we~~~~~i~v~~an~~~~~i~--------~~~~~~~i~I~~~~F~IP~i---Yq~~ 88 (201)
T PF02160_consen 20 NYHCYVDTGATICCASKKIIPEEYWEKSKKPIKVKGANGSIIQIN--------KKAKNGKIQIADKIFRIPTI---YQQE 88 (201)
T ss_pred EEEEEEeCCCceEEecCCcCCHHHHHhCCCcEEEEEecCCceEEE--------EEecCceEEEccEEEeccEE---EEec
Confidence 45689999999887755444 222222222111111111111111 13567788888877777643 2211
Q ss_pred CCeEEEEEEcCCCcceechhhhccEEEEEECCCCEEEEee
Q 043437 382 DTSVCFTFKGMEGQSIYGNLAQANFLVGYDTKAKTVSFKP 421 (426)
Q Consensus 382 ~~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 421 (426)
++-..|||.+|+|.++=-...+ .+|-|..
T Consensus 89 ----------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 89 ----------SGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred ----------CCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 2357999999999887666665 4576654
No 42
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=78.54 E-value=2.8 Score=31.69 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.4
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeeeCC
Q 043437 91 NISIGTPPVEILAIADTGSDLIWTQCK 117 (426)
Q Consensus 91 ~i~iGTP~q~~~~~~DTGS~~~Wv~~~ 117 (426)
.+.|+ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 89999999999999999654
No 43
>PF13650 Asp_protease_2: Aspartyl protease
Probab=76.42 E-value=3.2 Score=30.95 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=23.6
Q ss_pred EEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 289 ISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 289 i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
+.|+++++ .+++|||.+.+.+.++.++++
T Consensus 3 v~vng~~~--------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV--------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE--------EEEEcCCCCcEEECHHHHHHc
Confidence 56777644 469999999999999988776
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=73.62 E-value=16 Score=31.07 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=19.7
Q ss_pred CCcEEEccCCccccCcHHHHHHH
Q 043437 303 EGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 303 ~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
...++||||++..++-.++.++|
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhh
Confidence 44579999999999999988877
No 45
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=73.44 E-value=4.8 Score=30.50 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=25.3
Q ss_pred EEEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 288 SISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 288 ~i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
.+.|+|+.+. +.+|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~--------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK--------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE--------EEEcCCcceEEeCHHHHHHh
Confidence 4678888666 49999999999999998876
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=70.36 E-value=7.7 Score=29.17 Aligned_cols=30 Identities=13% Similarity=0.556 Sum_probs=23.6
Q ss_pred EEEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 288 SISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 288 ~i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
.+.||++.+. +++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~~--------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR--------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE--------EEEECCCCcEEcCHHHHHHc
Confidence 4567766544 69999999999999877765
No 47
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=67.69 E-value=9.8 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.657 Sum_probs=23.8
Q ss_pred EEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 289 ISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 289 i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
+.|++..+ .+++|||.+..+++.+..+++
T Consensus 13 ~~I~g~~~--------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV--------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE--------EEEEeCCCcceecCHHHHHHh
Confidence 45677543 379999999999999999887
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=64.22 E-value=7.6 Score=29.13 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.0
Q ss_pred EEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 289 ISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 289 i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
+.|||+.+. .++|||.+.+.++++..+++
T Consensus 3 v~InG~~~~--------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV--------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE--------EEEECCCCeEEECHHHhhhc
Confidence 567777655 59999999999999988765
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=51.28 E-value=21 Score=30.38 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=21.6
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 043437 90 MNISIGTPPVEILAIADTGSDLIWTQCK 117 (426)
Q Consensus 90 ~~i~iGTP~q~~~~~~DTGS~~~Wv~~~ 117 (426)
..+.+++-..+++++|||||....+...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3344444589999999999999988665
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=43.86 E-value=41 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=25.3
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCc
Q 043437 85 LGEYVMNISIGTPPVEILAIADTGSDLIWTQCKPCTEC 122 (426)
Q Consensus 85 ~~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~~C~~C 122 (426)
..-.|++++|+ ++++.+++|||...+-+..+-+..|
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 34589999999 8999999999999988866543455
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=42.44 E-value=27 Score=26.65 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.9
Q ss_pred CCcEEEccCCccccCcHHHHHHH
Q 043437 303 EGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 303 ~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
...+.+|||.+...+|...++++
T Consensus 10 ~v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 10 SVKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred eEEEEEecCCEEEeccHHHHhhh
Confidence 34569999999999999988877
No 52
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.24 E-value=16 Score=29.47 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=47.6
Q ss_pred EEEccCCc-cccCcHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCCCCCeEEEEEccceEEeCCCceEEEcCCCe
Q 043437 306 IIIDSGTT-LTFLPPDIVSKLTSAVSDLIKADPISDPEGVLDLCYPYSSDFKAPQITVHFSGADVVLSPENTFIRTSDTS 384 (426)
Q Consensus 306 ~iiDTGt~-~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~l~f~f~g~~~~l~~~~~~~~~~~~~ 384 (426)
.++|||-+ ++.+|+.+++++ +. ... .....|-.. .-.+...+--+.+.+....+...
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~----~~----~~~----~~~~~~~a~-----~~~v~t~V~~~~iki~g~e~~~~----- 86 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL----GL----PLF----STIRIVLAD-----GGVVKTSVALATIKIDGVEKVAF----- 86 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc----CC----Ccc----CChhhhhhc-----CCEEEEEEEEEEEEECCEEEEEE-----
Confidence 48999999 999999999987 11 111 001112211 11222222223344433322211
Q ss_pred EEEEEEcCC--CcceechhhhccEEEEEECCCCEE
Q 043437 385 VCFTFKGME--GQSIYGNLAQANFLVGYDTKAKTV 417 (426)
Q Consensus 385 ~C~~i~~~~--~~~ilG~~fl~~~y~vfD~~~~~i 417 (426)
+..++ ...+||...|+..-.++|+..+++
T Consensus 87 ----Vl~s~~~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 87 ----VLASDNLPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred ----EEccCCCcccchhhhhhhhccEEEcCCcceE
Confidence 11221 345999999999999999877765
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=39.36 E-value=40 Score=26.48 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=18.9
Q ss_pred EEEEeCCCC----cEEEEEEEcCCCcee
Q 043437 90 MNISIGTPP----VEILAIADTGSDLIW 113 (426)
Q Consensus 90 ~~i~iGTP~----q~~~~~~DTGS~~~W 113 (426)
++|.|..|. -++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 678888873 267899999999664
No 54
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=38.86 E-value=99 Score=27.44 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=32.5
Q ss_pred EEeecccCCCCceEEEEEEEEEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 269 VTTPLVAKDPDTFYFLTLESISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 269 ~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
..+-+.+.. .+||.++ ..|||+.+.. ++|||.+.+.++++..+.+
T Consensus 94 ~~v~Lak~~-~GHF~a~---~~VNGk~v~f--------LVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 94 QEVSLAKSR-DGHFEAN---GRVNGKKVDF--------LVDTGATSVALNEEDARRL 138 (215)
T ss_pred eEEEEEecC-CCcEEEE---EEECCEEEEE--------EEecCcceeecCHHHHHHh
Confidence 344444433 5666644 5689987765 9999999999999887766
No 55
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=38.20 E-value=26 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=18.8
Q ss_pred EEeCCCC-cEEEEEEEcCCCceeeeCC
Q 043437 92 ISIGTPP-VEILAIADTGSDLIWTQCK 117 (426)
Q Consensus 92 i~iGTP~-q~~~~~~DTGS~~~Wv~~~ 117 (426)
+.|. + +.+++.+|||++..-++-.
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~~ 27 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPLR 27 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccHH
Confidence 4455 5 8999999999998877544
No 56
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.77 E-value=23 Score=27.25 Aligned_cols=13 Identities=38% Similarity=0.289 Sum_probs=6.5
Q ss_pred CcchhhHHHHHHHH
Q 043437 1 MATVNASAISFLIL 14 (426)
Q Consensus 1 M~~~~~~~~~~~~~ 14 (426)
|. +.+++||+|+|
T Consensus 1 Ma-SK~~llL~l~L 13 (95)
T PF07172_consen 1 MA-SKAFLLLGLLL 13 (95)
T ss_pred Cc-hhHHHHHHHHH
Confidence 65 44455554443
No 57
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=28.92 E-value=49 Score=25.10 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=17.1
Q ss_pred cEEEEEEEcCCCceeeeCCCC
Q 043437 99 VEILAIADTGSDLIWTQCKPC 119 (426)
Q Consensus 99 q~~~~~~DTGS~~~Wv~~~~C 119 (426)
...+.++|||+...-+|...|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 346889999999999987653
No 58
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=26.88 E-value=75 Score=25.81 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=22.6
Q ss_pred EEEEcceeeeecCCCCCcEEEccCCccccCcHHHHHHH
Q 043437 288 SISVGKKKIHFDDASEGNIIIDSGTTLTFLPPDIVSKL 325 (426)
Q Consensus 288 ~i~v~~~~~~~~~~~~~~~iiDTGt~~~~lp~~~~~~i 325 (426)
.+++||+.+ .|++|||+..+.++.+..+++
T Consensus 28 ~~~ing~~v--------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV--------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE--------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE--------EEEEeCCCCccccCHHHHHHc
Confidence 356777755 479999999999999998875
No 59
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=26.80 E-value=74 Score=23.53 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=8.7
Q ss_pred HHhhhccccc-cCCceEEE
Q 043437 14 LCLSSLSITE-AKGGFSLD 31 (426)
Q Consensus 14 ~~~~~~~~~~-~~~~~~l~ 31 (426)
++.|++|+++ .++.+.++
T Consensus 15 LtVALAAPsQKsKRSVtve 33 (100)
T PF05984_consen 15 LTVALAAPSQKSKRSVTVE 33 (100)
T ss_pred HHHHhhccccccccceeec
Confidence 5555445444 44555444
No 60
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.23 E-value=1.1e+02 Score=25.14 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=24.5
Q ss_pred ccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 043437 86 GEYVMNISIGTPPVEILAIADTGSDLIWTQCK 117 (426)
Q Consensus 86 ~~Y~~~i~iGTP~q~~~~~~DTGS~~~Wv~~~ 117 (426)
..-.+.+.|. .++..+++|+|++...|...
T Consensus 20 ~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 3456788888 59999999999999988554
No 61
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=21.30 E-value=1e+02 Score=28.56 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=23.1
Q ss_pred ccEEEE---EEeCC---CCcEEEEEEEcCCCceeeeCC
Q 043437 86 GEYVMN---ISIGT---PPVEILAIADTGSDLIWTQCK 117 (426)
Q Consensus 86 ~~Y~~~---i~iGT---P~q~~~~~~DTGS~~~Wv~~~ 117 (426)
..|.++ |.||. +.....++||||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456655 68873 223457999999999999765
Done!