BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043438
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 16/146 (10%)

Query: 10  KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTF-IDDQLNRGDDISESLLNAMK----HQ 64
           +Y+VF+SFR  DTR+ FT  LY +L R  I TF  DD+L +G +I  +LL A+     + 
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94

Query: 65  PFQS--------CLDELEKILECKREYG-QIVIPVFYRVDPSDVRNQTGSFGISFSKLEE 115
           P  S        CL EL +I+  + E   +I++P+FY VDPSDVR+QTG +  +F K   
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154

Query: 116 RFKENSEKLQTWRNALKAAASLSGFH 141
           +F  + + +Q W++ALK    L G+H
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWH 178


>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 79/148 (53%), Gaps = 15/148 (10%)

Query: 5   SRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDDISESLLNAMKH 63
           S    KYDVF+SFR  DTR NF S LY  L R++I+TF DD +L  G   S  L + ++ 
Sbjct: 3   SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEV 62

Query: 64  QPFQS------------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFS 111
             F              CLDEL  I++ +++    V+P+FY V+P+ VR QTG     F 
Sbjct: 63  SRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFK 122

Query: 112 KLEERFKENSEKLQTWRNALKAAASLSG 139
           K   R  E+ EK+  WR AL   A LSG
Sbjct: 123 KHASR--EDPEKVLKWRQALTNFAQLSG 148


>pdb|2LA8|A Chain A, Solution Structure Of Inad Pdz5 Complexed With Kon-Tiki
          Peptide
          Length = 106

 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 43 IDDQLNRGDDISESLLNAMKHQPFQSC 69
          ID +L RGD I++   +A++  PFQ C
Sbjct: 40 IDSKLQRGDIITKFNGDALEGLPFQVC 66


>pdb|2QKU|A Chain A, The 5th Pdz Domain Of Inad In 10mm Dtt
 pdb|2QKU|B Chain B, The 5th Pdz Domain Of Inad In 10mm Dtt
 pdb|2QKU|C Chain C, The 5th Pdz Domain Of Inad In 10mm Dtt
          Length = 90

 Score = 27.7 bits (60), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 43 IDDQLNRGDDISESLLNAMKHQPFQSC 69
          ID +L RGD I++   +A++  PFQ C
Sbjct: 40 IDSKLQRGDIITKFNGDALEGLPFQVC 66


>pdb|2QKT|A Chain A, Crystal Structure Of The 5th Pdz Domain Of Inad
 pdb|2QKT|B Chain B, Crystal Structure Of The 5th Pdz Domain Of Inad
          Length = 90

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 43 IDDQLNRGDDISESLLNAMKHQPFQSC 69
          ID +L RGD I++   +A++  PFQ C
Sbjct: 40 IDSKLQRGDIITKFNGDALEGLPFQVC 66


>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
 pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
 pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
 pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
 pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
 pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
 pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
 pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
          Length = 206

 Score = 27.3 bits (59), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 43  IDDQLNRGDDISESLLNAMKHQPFQSC 69
           ID +L RGD I++   +A++  PFQ C
Sbjct: 151 IDSKLQRGDIITKFNGDALEGLPFQVC 177


>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
          Length = 591

 Score = 25.8 bits (55), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 51  DDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVR 100
           DD SE+ LN  + +        L  I   K   G+ V+   YRV+P   R
Sbjct: 448 DDFSEAELNPARVRWISDLTKRLNSITRFKWTGGKAVLKQHYRVEPIGFR 497


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,041,679
Number of Sequences: 62578
Number of extensions: 146183
Number of successful extensions: 344
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 12
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)