Query 043438
Match_columns 146
No_of_seqs 125 out of 1081
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 4.1E-54 1.4E-58 328.0 8.7 139 3-143 1-152 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.6E-53 5.6E-58 330.7 9.3 140 5-146 30-183 (204)
3 3h16_A TIR protein; bacteria T 100.0 3.4E-32 1.2E-36 201.8 2.7 122 7-134 17-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 2.2E-23 7.6E-28 153.8 4.7 119 4-131 4-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.7 1.9E-19 6.4E-24 132.8 1.6 91 7-99 2-110 (149)
6 2js7_A Myeloid differentiation 99.7 9.2E-19 3.2E-23 130.7 3.9 88 7-96 13-117 (160)
7 2j67_A TOLL like receptor 10; 99.7 1.3E-18 4.6E-23 132.0 4.6 87 6-94 31-134 (178)
8 1t3g_A X-linked interleukin-1 99.7 5.8E-18 2E-22 126.2 6.6 89 9-97 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.2 8.8E-12 3E-16 111.6 6.7 89 7-97 667-775 (844)
10 1eiw_A Hypothetical protein MT 90.3 0.2 6.9E-06 34.6 3.0 71 9-91 3-74 (111)
11 3hjn_A DTMP kinase, thymidylat 81.0 4.8 0.00016 29.5 6.6 30 14-43 2-33 (197)
12 3dt5_A Uncharacterized protein 55.2 3.3 0.00011 28.2 0.6 34 68-101 42-79 (135)
13 2jug_A TUBC protein; docking d 53.7 9.6 0.00033 23.9 2.7 48 28-80 8-59 (78)
14 1bax_A M-PMV MA, M-PMV matrix 43.3 12 0.0004 25.1 1.8 18 24-41 9-26 (94)
15 4a6h_A Phosphatidylinositol 4, 42.0 16 0.00053 24.8 2.4 20 119-138 101-120 (120)
16 3czq_A Putative polyphosphate 38.7 38 0.0013 27.0 4.5 32 12-43 86-119 (304)
17 1sc3_B Interleukin-1 beta conv 38.2 10 0.00034 24.6 0.9 24 14-37 21-44 (88)
18 2ql9_B Caspase-7; cysteine pro 36.3 11 0.00037 24.7 0.8 26 13-38 22-47 (97)
19 1qtn_B Caspase-8; apoptosis, d 35.7 11 0.00037 24.7 0.7 24 14-37 25-48 (95)
20 2yry_A Pleckstrin homology dom 33.9 28 0.00095 22.4 2.6 19 119-137 103-121 (122)
21 2dko_B Caspase-3; low barrier 33.4 13 0.00044 24.7 0.8 24 14-37 29-52 (103)
22 2d9v_A Pleckstrin homology dom 33.2 31 0.0011 23.0 2.8 22 119-140 97-118 (130)
23 2lpy_A Matrix protein P10; GAG 33.1 19 0.00066 25.1 1.7 21 24-44 8-28 (124)
24 2fcj_A Small toprim domain pro 32.6 25 0.00086 24.2 2.2 64 14-79 29-103 (119)
25 1v5p_A Pleckstrin homology dom 32.1 30 0.001 23.3 2.6 20 119-138 103-122 (126)
26 2cof_A Protein KIAA1914; PH do 30.4 35 0.0012 21.6 2.6 19 119-137 84-102 (107)
27 1pyo_B Caspase-2; apoptosis, c 30.3 16 0.00053 24.4 0.8 25 13-37 26-50 (105)
28 2i5f_A Pleckstrin; PH domain, 29.5 36 0.0012 21.3 2.5 17 119-135 92-108 (109)
29 1x1g_A Pleckstrin 2; PH domain 28.1 40 0.0014 21.9 2.6 19 119-137 107-125 (129)
30 2xzd_B Caspase-3; hydrolase-pr 27.1 19 0.00067 24.6 0.9 25 13-37 27-51 (118)
31 2coc_A FYVE, rhogef and PH dom 26.9 41 0.0014 22.3 2.5 18 119-136 89-106 (112)
32 1upq_A PEPP1; PH domain, phosp 26.8 42 0.0014 21.6 2.5 22 119-140 92-113 (123)
33 3ro3_B Minsc, peptide of prote 26.7 48 0.0016 16.0 2.0 14 121-134 7-20 (22)
34 3otr_A Enolase; structural gen 26.4 42 0.0014 28.3 3.0 33 9-41 375-407 (452)
35 4f3h_A Fimxeal, putative uncha 26.4 1.7E+02 0.0057 21.4 6.2 90 24-116 9-121 (250)
36 4hlc_A DTMP kinase, thymidylat 26.3 63 0.0022 23.5 3.7 29 14-43 4-34 (205)
37 3aj4_A Pleckstrin homology dom 25.7 46 0.0016 21.1 2.5 17 119-135 94-110 (112)
38 1wgq_A FYVE, rhogef and PH dom 25.3 46 0.0016 21.0 2.5 18 119-136 86-103 (109)
39 2lul_A Tyrosine-protein kinase 25.0 44 0.0015 23.4 2.5 19 119-137 104-122 (164)
40 1dro_A Beta-spectrin; cytoskel 24.8 46 0.0016 21.7 2.5 19 120-138 103-121 (122)
41 3cxb_B Pleckstrin homology dom 24.8 48 0.0016 21.5 2.5 18 119-136 84-101 (112)
42 3rjm_B Caspase-2; caspase-2, c 24.6 18 0.0006 24.8 0.3 26 12-37 26-51 (117)
43 1x05_A Pleckstrin; PH domain, 24.6 52 0.0018 21.4 2.7 19 119-137 103-121 (129)
44 2d9y_A Pleckstrin homology dom 24.5 50 0.0017 20.9 2.5 20 119-138 92-111 (117)
45 2w2x_D 1-phosphatidylinositol- 24.5 42 0.0015 22.2 2.2 19 119-137 102-120 (124)
46 2dkp_A Pleckstrin homology dom 24.4 48 0.0016 21.4 2.5 19 119-137 102-120 (128)
47 1x1f_A Signal-transducing adap 24.4 46 0.0016 23.3 2.5 21 119-139 96-116 (149)
48 1v89_A Hypothetical protein KI 24.3 45 0.0015 21.0 2.3 19 119-137 95-113 (118)
49 1wjm_A Beta-spectrin III; PH d 24.2 45 0.0015 21.7 2.3 18 119-136 100-117 (123)
50 1u5d_A SKAP55, SRC kinase-asso 23.3 49 0.0017 20.4 2.3 18 119-136 88-105 (108)
51 2dn6_A KIAA0640 protein; PH do 22.6 51 0.0017 20.8 2.3 19 119-137 86-104 (115)
52 2d9x_A Oxysterol binding prote 22.5 51 0.0017 21.3 2.3 19 119-137 87-105 (120)
53 2dhk_A TBC1 domain family memb 22.4 55 0.0019 21.2 2.5 17 119-135 87-103 (119)
54 1fgy_A GRP1; PH domain, signal 22.2 52 0.0018 21.1 2.3 18 119-136 103-120 (127)
55 1wdi_A Hypothetical protein TT 21.7 86 0.0029 25.5 3.8 78 11-90 169-256 (345)
56 1tu9_A Hypothetical protein PA 21.6 26 0.00088 23.6 0.6 42 92-137 84-127 (134)
57 1v5u_A SBF1, SET binding facto 20.7 56 0.0019 20.6 2.2 19 119-137 94-112 (117)
58 2k4v_A Uncharacterized protein 20.5 56 0.0019 22.8 2.2 22 20-41 62-83 (125)
59 1v88_A Oxysterol binding prote 20.3 69 0.0024 21.6 2.7 20 119-138 107-126 (130)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.1e-54 Score=328.02 Aligned_cols=139 Identities=44% Similarity=0.696 Sum_probs=115.8
Q ss_pred CCCCCCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------cc
Q 043438 3 SFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SC 69 (146)
Q Consensus 3 ~~s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wC 69 (146)
|+|+..++|||||||||+|+|++|++||+++|.++||++|+|++ +++|+.|.++|.+||++|+++ ||
T Consensus 1 msss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WC 80 (176)
T 3jrn_A 1 MSSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWC 80 (176)
T ss_dssp ------CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHH
T ss_pred CCCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhH
Confidence 45667899999999999999999999999999999999999977 999999999999999999987 99
Q ss_pred HHHHHHHHHHHhhCCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeecc
Q 043438 70 LDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQ 143 (146)
Q Consensus 70 l~EL~~i~~~~~~~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~ 143 (146)
|+||++|++|++..+++||||||+|+|||||+|+|.||+||.+|+++ .+.+++++||.||++||+++||++.
T Consensus 81 l~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 81 LDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 99999999999999999999999999999999999999999999987 4689999999999999999999984
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.6e-53 Score=330.75 Aligned_cols=140 Identities=41% Similarity=0.745 Sum_probs=129.8
Q ss_pred CCCCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccHH
Q 043438 5 SRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCLD 71 (146)
Q Consensus 5 s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl~ 71 (146)
+.|.++|||||||||+|+|.+|++||+.+|.++||++|+|++ +++|+.|.++|++||++|+++ |||+
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 456889999999999999999999999999999999999977 999999999999999999987 9999
Q ss_pred HHHHHHHHHhh-CCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccCCC
Q 043438 72 ELEKILECKRE-YGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR 146 (146)
Q Consensus 72 EL~~i~~~~~~-~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~ 146 (146)
||++|++|+++ .+++||||||+|+|++||+|+|.||+||.+|++++. .+++++||.||++||+++||++++++
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~ 183 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKND 183 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCC
Confidence 99999999875 689999999999999999999999999999999874 68999999999999999999998763
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=3.4e-32 Score=201.78 Aligned_cols=122 Identities=18% Similarity=0.288 Sum_probs=106.0
Q ss_pred CCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccHHHH
Q 043438 7 NNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCLDEL 73 (146)
Q Consensus 7 ~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl~EL 73 (146)
+.++|||||||+++| +..|+.+|+.+|+++||++|+|+. +.+|+.+.++|.++|++|++. ||++||
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 468899999999999 678999999999999999999987 999999999999999999986 999999
Q ss_pred HHHHHHHhhCCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHh
Q 043438 74 EKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAA 134 (146)
Q Consensus 74 ~~i~~~~~~~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v 134 (146)
.++++|....++.||||||+|+|++||+|+|.||++|...... ..+.++-+.|.++
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~l 151 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMAI 151 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence 9999998888889999999999999999999999988654432 3345555555543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=2.2e-23 Score=153.78 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCCCCCcceEEeecccccccchhHHHHHHHHhc--CCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------c
Q 043438 4 FSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSR--QNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------S 68 (146)
Q Consensus 4 ~s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~--~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------w 68 (146)
|+...+.|||||||+++|++ |+.+|+.+|++ .|+++|+++. +.+|+.+.+++.++|++|+.. |
T Consensus 4 ~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 44567789999999999974 79999999998 5999999887 999999999999999999975 9
Q ss_pred cHHHHHHHHHHHhhCCcEEEeEEeeecC----cccccccCc----hHHHHHHHHHHhccChHHHHHHHHHH
Q 043438 69 CLDELEKILECKREYGQIVIPVFYRVDP----SDVRNQTGS----FGISFSKLEERFKENSEKLQTWRNAL 131 (146)
Q Consensus 69 Cl~EL~~i~~~~~~~~~~VlPVFY~V~p----sdVr~q~g~----f~~af~~~~~~~~~~~e~v~~W~~AL 131 (146)
|+.||..++.|.......||||||+|++ ..++..... ....|.+. .+.|.+|+.||
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 9999999999863333367799999985 445665432 23444333 47789999886
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.75 E-value=1.9e-19 Score=132.79 Aligned_cols=91 Identities=15% Similarity=0.261 Sum_probs=78.5
Q ss_pred CCCcceEEeecccccccchhHHH-HHHHHhcC--CeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccH
Q 043438 7 NNKKYDVFVSFRAEDTRDNFTSH-LYSALSRQ--NIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCL 70 (146)
Q Consensus 7 ~~~~ydVFiSfrg~Dtr~~Fv~~-L~~aL~~~--gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl 70 (146)
..+.|||||||+++|+ .|+.+ |+.+|+++ |+++|+|+. +.+|+.+.+++.++|++|+.. ||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3568999999999997 79997 99999986 999999987 999999999999999999975 999
Q ss_pred HHHHHHHH-HHhhCCcEEEeEEee-ecCccc
Q 043438 71 DELEKILE-CKREYGQIVIPVFYR-VDPSDV 99 (146)
Q Consensus 71 ~EL~~i~~-~~~~~~~~VlPVFY~-V~psdV 99 (146)
.||..++. +....++.||||||+ +++..+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 99999885 445567789999996 555444
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.73 E-value=9.2e-19 Score=130.68 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=76.9
Q ss_pred CCCcceEEeecccccccchhHHHHHHHHhcC--CeeeeccCc-cCCCCcchHHHHHHhh-hCccc------------ccH
Q 043438 7 NNKKYDVFVSFRAEDTRDNFTSHLYSALSRQ--NIQTFIDDQ-LNRGDDISESLLNAMK-HQPFQ------------SCL 70 (146)
Q Consensus 7 ~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~--gi~~f~d~~-~~~G~~i~~~l~~aI~-~S~is------------wCl 70 (146)
..+.|||||||+++| ..|+.+|+.+|.++ |+++|+++. +.+|+.+.+++.++|+ .|+.. ||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 467899999999999 58999999999984 699999887 9999999999999999 69864 999
Q ss_pred HHHHHHHHHH-hhCCcEEEeEEeeecC
Q 043438 71 DELEKILECK-REYGQIVIPVFYRVDP 96 (146)
Q Consensus 71 ~EL~~i~~~~-~~~~~~VlPVFY~V~p 96 (146)
.||..++++. ...++.||||||+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999975 3445789999998653
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.73 E-value=1.3e-18 Score=132.03 Aligned_cols=87 Identities=17% Similarity=0.319 Sum_probs=72.6
Q ss_pred CCCCcceEEeecccccccchhHH-HHHHHHhc--CCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------cc
Q 043438 6 RNNKKYDVFVSFRAEDTRDNFTS-HLYSALSR--QNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SC 69 (146)
Q Consensus 6 ~~~~~ydVFiSfrg~Dtr~~Fv~-~L~~aL~~--~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wC 69 (146)
...+.|||||||+++|+ .|+. +|+.+|++ +|+++|+|+. +.+|+.+.+++.++|++|+.. ||
T Consensus 31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 45678999999999996 7997 59999998 8999999987 999999999999999999875 99
Q ss_pred HHHHHHHHHHH-hhCCcEEEeEEeee
Q 043438 70 LDELEKILECK-REYGQIVIPVFYRV 94 (146)
Q Consensus 70 l~EL~~i~~~~-~~~~~~VlPVFY~V 94 (146)
+.||..++.+. +..++.||||||+-
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 99999999653 45677899999973
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=126.22 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=77.2
Q ss_pred CcceEEeecccccc---------cchhHHHHHH-HHh-cCCeeeeccCc-cCCCCcchHHHHHHhhhCccc---------
Q 043438 9 KKYDVFVSFRAEDT---------RDNFTSHLYS-ALS-RQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ--------- 67 (146)
Q Consensus 9 ~~ydVFiSfrg~Dt---------r~~Fv~~L~~-aL~-~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is--------- 67 (146)
+.|||||||+++|+ +..||.+|.. .|+ +.|+++|+++. +.+|+.+.+++.++|++|+..
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 46999999999997 4789999776 598 79999999887 999999999999999999753
Q ss_pred ----ccHHHHHHHHHHH-hhCCcEEEeEEeeecCc
Q 043438 68 ----SCLDELEKILECK-REYGQIVIPVFYRVDPS 97 (146)
Q Consensus 68 ----wCl~EL~~i~~~~-~~~~~~VlPVFY~V~ps 97 (146)
||+.|+..++.|. ...++.||||||.-.|.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999986 55678999999885554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.23 E-value=8.8e-12 Score=111.60 Aligned_cols=89 Identities=15% Similarity=0.261 Sum_probs=76.6
Q ss_pred CCCcceEEeecccccccchhH-HHHHHHHhc-----CCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------
Q 043438 7 NNKKYDVFVSFRAEDTRDNFT-SHLYSALSR-----QNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------ 67 (146)
Q Consensus 7 ~~~~ydVFiSfrg~Dtr~~Fv-~~L~~aL~~-----~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------ 67 (146)
..+.|||||||+++|. .|| ..|...|+. .|+++|++++ +.+|+.+.+++.++|++||..
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 3578999999999995 788 779999984 6899999987 999999999999999999865
Q ss_pred ccHHHHHHHHHHH-hhCCcEEEeEEeeecCc
Q 043438 68 SCLDELEKILECK-REYGQIVIPVFYRVDPS 97 (146)
Q Consensus 68 wCl~EL~~i~~~~-~~~~~~VlPVFY~V~ps 97 (146)
||..|+..++.+. ++.+..||||||+--|.
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 9999999888754 56678999999985543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=90.26 E-value=0.2 Score=34.58 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=35.6
Q ss_pred CcceEEeecccccccchhHHHHHHHHhcCCeeeeccCccCCCCcchHHHHHHhhhCccc-ccHHHHHHHHHHHhhCCcEE
Q 043438 9 KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQ-SCLDELEKILECKREYGQIV 87 (146)
Q Consensus 9 ~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~~~~G~~i~~~l~~aI~~S~is-wCl~EL~~i~~~~~~~~~~V 87 (146)
.+|.|||||..+|.+..|+..| .+.|+. |.|..+++-+-+- ++ +=..+.-+ ||..|+.... +.+..|
T Consensus 3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f~-~~~~~I~~~~~vI--vL-~G~~t~~s~wv~~EI~~A~----~~gkpI 70 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFLERL----EQSGLE-WRPATPEDADAVI--VL-AGLWGTRRDEILGAVDLAR----KSSKPI 70 (111)
T ss_dssp CCEEEEECCCCSHHHHHHHHHH----HHHCSC-EEECCSSSCSEEE--EE-GGGTTTSHHHHHHHHHHHT----TTTCCE
T ss_pred ceEEEEEecccHhHHHHHHHHH----hCCCCe-eecCccccCCEEE--EE-eCCCcCCChHHHHHHHHHH----HcCCCE
Confidence 4699999999998334444444 244552 3332232222210 00 00111111 9999997544 345555
Q ss_pred EeEE
Q 043438 88 IPVF 91 (146)
Q Consensus 88 lPVF 91 (146)
+=|.
T Consensus 71 igV~ 74 (111)
T 1eiw_A 71 ITVR 74 (111)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5553
No 11
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=80.95 E-value=4.8 Score=29.51 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=25.6
Q ss_pred Eeecccccc--cchhHHHHHHHHhcCCeeeec
Q 043438 14 FVSFRAEDT--RDNFTSHLYSALSRQNIQTFI 43 (146)
Q Consensus 14 FiSfrg~Dt--r~~Fv~~L~~aL~~~gi~~f~ 43 (146)
||.|-|.|. +.+-+..|.+.|..+|+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 899999886 477889999999999998754
No 12
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=55.20 E-value=3.3 Score=28.18 Aligned_cols=34 Identities=26% Similarity=0.639 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHHhhC-C---cEEEeEEeeecCccccc
Q 043438 68 SCLDELEKILECKREY-G---QIVIPVFYRVDPSDVRN 101 (146)
Q Consensus 68 wCl~EL~~i~~~~~~~-~---~~VlPVFY~V~psdVr~ 101 (146)
..-||+..|+-|++-. | .+|+|.-++.....+..
T Consensus 42 qtedeietiitcrrylagnnllrvlpmhfkfkadkiag 79 (135)
T 3dt5_A 42 QTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAG 79 (135)
T ss_dssp THHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCTT
T ss_pred cchhHHHHHHHHHHHhcccchhhhcchheeeecchhcc
Confidence 6678999999998632 2 47899887766555543
No 13
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=53.73 E-value=9.6 Score=23.89 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCeeeeccCc-cC---CCCcchHHHHHHhhhCcccccHHHHHHHHHHH
Q 043438 28 SHLYSALSRQNIQTFIDDQ-LN---RGDDISESLLNAMKHQPFQSCLDELEKILECK 80 (146)
Q Consensus 28 ~~L~~aL~~~gi~~f~d~~-~~---~G~~i~~~l~~aI~~S~iswCl~EL~~i~~~~ 80 (146)
..|...|.++||..|.+.+ ++ +-..+++++...+.+.+ .||...+...
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K-----~ell~~L~~~ 59 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR-----HELIALLRQL 59 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH-----HHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH-----HHHHHHHHHh
Confidence 4577899999999999877 43 22357788887777644 3566666544
No 14
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=43.30 E-value=12 Score=25.06 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=16.9
Q ss_pred chhHHHHHHHHhcCCeee
Q 043438 24 DNFTSHLYSALSRQNIQT 41 (146)
Q Consensus 24 ~~Fv~~L~~aL~~~gi~~ 41 (146)
..|++.|...|+.+||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 469999999999999999
No 15
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=41.98 E-value=16 Score=24.79 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 043438 119 ENSEKLQTWRNALKAAASLS 138 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~~ 138 (146)
++.+..++|.+||..+++++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 35789999999999998763
No 16
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=38.73 E-value=38 Score=26.98 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=27.6
Q ss_pred eEEeecccccc--cchhHHHHHHHHhcCCeeeec
Q 043438 12 DVFVSFRAEDT--RDNFTSHLYSALSRQNIQTFI 43 (146)
Q Consensus 12 dVFiSfrg~Dt--r~~Fv~~L~~aL~~~gi~~f~ 43 (146)
-|||-|-|-|. +.+-+.+|...|..+|+.|..
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~ 119 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVA 119 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEE
Confidence 58999999887 577889999999999997764
No 17
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=38.23 E-value=10 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.2
Q ss_pred EeecccccccchhHHHHHHHHhcC
Q 043438 14 FVSFRAEDTRDNFTSHLYSALSRQ 37 (146)
Q Consensus 14 FiSfrg~Dtr~~Fv~~L~~aL~~~ 37 (146)
|.|+|......-|+..|++.|++.
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~ 44 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEY 44 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHH
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHh
Confidence 567787766777888888888753
No 18
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=36.27 E-value=11 Score=24.70 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=19.0
Q ss_pred EEeecccccccchhHHHHHHHHhcCC
Q 043438 13 VFVSFRAEDTRDNFTSHLYSALSRQN 38 (146)
Q Consensus 13 VFiSfrg~Dtr~~Fv~~L~~aL~~~g 38 (146)
-|.|+|..+...-|+..|++.|.+.|
T Consensus 22 G~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 22 GYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 35677777667778899988887543
No 19
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=35.74 E-value=11 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=16.7
Q ss_pred EeecccccccchhHHHHHHHHhcC
Q 043438 14 FVSFRAEDTRDNFTSHLYSALSRQ 37 (146)
Q Consensus 14 FiSfrg~Dtr~~Fv~~L~~aL~~~ 37 (146)
|.|+|..+...-|+..|++.|.+.
T Consensus 25 ~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 25 CVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHH
T ss_pred cEEEecCCCCcHHHHHHHHHHHHh
Confidence 556666666667888888888653
No 20
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.87 E-value=28 Score=22.43 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999998765
No 21
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=33.42 E-value=13 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.6
Q ss_pred EeecccccccchhHHHHHHHHhcC
Q 043438 14 FVSFRAEDTRDNFTSHLYSALSRQ 37 (146)
Q Consensus 14 FiSfrg~Dtr~~Fv~~L~~aL~~~ 37 (146)
|.|+|......-|+..|++.|.+.
T Consensus 29 ~vS~R~~~~GSwfIq~Lc~~l~~~ 52 (103)
T 2dko_B 29 YYSWRNSKDGSWFIQSLCAMLKQY 52 (103)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHH
T ss_pred cEeEEcCCCCCeeHHHHHHHHHHh
Confidence 556777666677888888888754
No 22
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.18 E-value=31 Score=22.95 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.9
Q ss_pred cChHHHHHHHHHHHHhhcccCe
Q 043438 119 ENSEKLQTWRNALKAAASLSGF 140 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~~G~ 140 (146)
++.+..+.|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 4578899999999999876643
No 23
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=33.09 E-value=19 Score=25.14 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=18.3
Q ss_pred chhHHHHHHHHhcCCeeeecc
Q 043438 24 DNFTSHLYSALSRQNIQTFID 44 (146)
Q Consensus 24 ~~Fv~~L~~aL~~~gi~~f~d 44 (146)
..|++.|...|+++||+|-..
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~~k 28 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVKYA 28 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCCHH
T ss_pred HHHHHHHHHHHHHCCeeecHH
Confidence 579999999999999998543
No 24
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=32.64 E-value=25 Score=24.21 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=43.1
Q ss_pred EeecccccccchhHHHHHHHHhcCCeeeeccCccCCCCcchHHHHHHhhhCccc-----------ccHHHHHHHHHH
Q 043438 14 FVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQ-----------SCLDELEKILEC 79 (146)
Q Consensus 14 FiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~~~~G~~i~~~l~~aI~~S~is-----------wCl~EL~~i~~~ 79 (146)
.|.-+|. ....-+..|..+...+|+.+|.|-+ ..|+.|...+.+.+.++..+ -..++|.+.++.
T Consensus 29 iI~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~hafi~r~~~gVE~a~~~~I~~aL~~ 103 (119)
T 2fcj_A 29 IVCTNGT-ISDARLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLR 103 (119)
T ss_dssp EEECCSC-CCHHHHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSEEECCCTTTCSTTTSCHHHHHHHHHH
T ss_pred EEEeCCc-cCHHHHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCcEEeccCCccCcccCCHHHHHHHHHh
Confidence 3445565 3334455677788899999999874 67888887777777777654 334556666654
No 25
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=32.14 E-value=30 Score=23.34 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=16.9
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 043438 119 ENSEKLQTWRNALKAAASLS 138 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~~ 138 (146)
++.+..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 45788999999999998764
No 26
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.35 E-value=35 Score=21.65 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.6
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..++|..||..++.-
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3578899999999988754
No 27
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=30.27 E-value=16 Score=24.38 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=18.6
Q ss_pred EEeecccccccchhHHHHHHHHhcC
Q 043438 13 VFVSFRAEDTRDNFTSHLYSALSRQ 37 (146)
Q Consensus 13 VFiSfrg~Dtr~~Fv~~L~~aL~~~ 37 (146)
-|.|+|..+...=|+..|++.|.+.
T Consensus 26 G~~S~R~~~~GSwFIq~Lc~~l~~~ 50 (105)
T 1pyo_B 26 GTAAMRNTKRGSWYIEALAQVFSER 50 (105)
T ss_dssp TBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHH
Confidence 3567777766777888888888753
No 28
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=29.52 E-value=36 Score=21.32 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=14.3
Q ss_pred cChHHHHHHHHHHHHhh
Q 043438 119 ENSEKLQTWRNALKAAA 135 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~ 135 (146)
++.+..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35788999999999876
No 29
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.05 E-value=40 Score=21.93 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||..++.-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4578899999999998764
No 30
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=27.12 E-value=19 Score=24.59 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=18.7
Q ss_pred EEeecccccccchhHHHHHHHHhcC
Q 043438 13 VFVSFRAEDTRDNFTSHLYSALSRQ 37 (146)
Q Consensus 13 VFiSfrg~Dtr~~Fv~~L~~aL~~~ 37 (146)
-|.|+|......-||..|++.|.+.
T Consensus 27 G~vS~R~~~~GSwFIQ~Lc~vl~~~ 51 (118)
T 2xzd_B 27 GYYSWRNSKDGSWFIQSLCAMLKQY 51 (118)
T ss_dssp TBCCCEETTTEEHHHHHHHHHHHHH
T ss_pred CCEeeEeCCCCCccHHHHHHHHHHh
Confidence 3567777766777899999888753
No 31
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.93 E-value=41 Score=22.32 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.1
Q ss_pred cChHHHHHHHHHHHHhhc
Q 043438 119 ENSEKLQTWRNALKAAAS 136 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~ 136 (146)
++.+..++|..||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 458899999999998764
No 32
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=26.84 E-value=42 Score=21.56 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=15.6
Q ss_pred cChHHHHHHHHHHHHhhcccCe
Q 043438 119 ENSEKLQTWRNALKAAASLSGF 140 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~~G~ 140 (146)
++.+....|..||..+....+-
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~ 113 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGD 113 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHhcccC
Confidence 3578899999999999876543
No 33
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=26.72 E-value=48 Score=15.98 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHh
Q 043438 121 SEKLQTWRNALKAA 134 (146)
Q Consensus 121 ~e~v~~W~~AL~~v 134 (146)
.+-|++|.+-|.-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 47899999988754
No 34
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=26.42 E-value=42 Score=28.34 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=28.2
Q ss_pred CcceEEeecccccccchhHHHHHHHHhcCCeee
Q 043438 9 KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQT 41 (146)
Q Consensus 9 ~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~ 41 (146)
..+.|.+|||.-+|.++|+-+|..+|...-|++
T Consensus 375 ~G~~vmvshrSGETeD~~iAdLaVgl~~gqIKt 407 (452)
T 3otr_A 375 SGWGVQVSHRSGETEDSFIADLVVGLRCGQIKS 407 (452)
T ss_dssp TTCEEEEECCSSCCSCCHHHHHHHHTTCCEEEC
T ss_pred cCCeEEEeCCCCCCchhHHHHHHHHcCCCcccc
Confidence 357899999877799999999999998777765
No 35
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=26.39 E-value=1.7e+02 Score=21.37 Aligned_cols=90 Identities=11% Similarity=0.172 Sum_probs=53.6
Q ss_pred chhHHHHHHHHhcCCeeeeccCc--cCC---------------CCcchH-HHHHHhhhCccc-----ccHHHHHHHHHHH
Q 043438 24 DNFTSHLYSALSRQNIQTFIDDQ--LNR---------------GDDISE-SLLNAMKHQPFQ-----SCLDELEKILECK 80 (146)
Q Consensus 24 ~~Fv~~L~~aL~~~gi~~f~d~~--~~~---------------G~~i~~-~l~~aI~~S~is-----wCl~EL~~i~~~~ 80 (146)
......|..||....+.++.--- +.. |..++| ..+..++++... |++.+....+...
T Consensus 9 ~~~~~~l~~al~~~~~~~~~QPiv~~~~~~i~g~EaL~R~~~~~~~~~p~~f~~~ae~~gl~~~l~~~vl~~a~~~~~~~ 88 (250)
T 4f3h_A 9 ERWVEQLREALIGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLITEIDRWVVARAIRQLGER 88 (250)
T ss_dssp HHHHHHHHHHTSSCCEEEEEEECEESSSCCCCEEEEEEEEEETTEEECTTTTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEEcceEECCCCCEEEEEEEEEEeCCCcEECHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 45678899999988887654100 111 222223 333445555543 8888876666554
Q ss_pred hhCCcEEEeEEeeecCcccccccCchHHHHHHHHHH
Q 043438 81 REYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEER 116 (146)
Q Consensus 81 ~~~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~ 116 (146)
...+.. +|++.+++|..+.+. .|...+....+.
T Consensus 89 ~~~~~~-~~l~iNls~~~l~~~--~~~~~l~~~l~~ 121 (250)
T 4f3h_A 89 QRAGHK-THLLVRIGPNSFSDP--QMIDTIREQLAV 121 (250)
T ss_dssp HHTTCC-CEEEEECCGGGSSCH--HHHHHHHHHHHH
T ss_pred HhcCCC-ceEEEEeCHHHhCCc--HHHHHHHHHHHH
Confidence 333332 489999999998754 466666555443
No 36
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=26.29 E-value=63 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.504 Sum_probs=22.9
Q ss_pred Eeecccccc--cchhHHHHHHHHhcCCeeeec
Q 043438 14 FVSFRAEDT--RDNFTSHLYSALSRQNIQTFI 43 (146)
Q Consensus 14 FiSfrg~Dt--r~~Fv~~L~~aL~~~gi~~f~ 43 (146)
||.|-|.|. +.+.+..|.+.|. +|+.+..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~ 34 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-KDYDVIM 34 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence 899999886 4678889999996 5876654
No 37
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=25.68 E-value=46 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=14.2
Q ss_pred cChHHHHHHHHHHHHhh
Q 043438 119 ENSEKLQTWRNALKAAA 135 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~ 135 (146)
++++..+.|..||.++.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35788999999999875
No 38
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=25.33 E-value=46 Score=21.00 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=14.9
Q ss_pred cChHHHHHHHHHHHHhhc
Q 043438 119 ENSEKLQTWRNALKAAAS 136 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~ 136 (146)
++.+..+.|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357889999999998764
No 39
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=25.01 E-value=44 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++++..+.|.+||.++..-
T Consensus 104 ~s~~e~~~Wi~aL~~~i~~ 122 (164)
T 2lul_A 104 PSPQSRDLWVKKLKEEIKN 122 (164)
T ss_dssp SSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4578899999999999764
No 40
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=24.82 E-value=46 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHhhccc
Q 043438 120 NSEKLQTWRNALKAAASLS 138 (146)
Q Consensus 120 ~~e~v~~W~~AL~~v~~~~ 138 (146)
+.+.++.|..||..+++..
T Consensus 103 s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 103 DDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5788999999999987653
No 41
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=24.82 E-value=48 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.0
Q ss_pred cChHHHHHHHHHHHHhhc
Q 043438 119 ENSEKLQTWRNALKAAAS 136 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~ 136 (146)
++++.++.|..||..++.
T Consensus 84 ~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 84 ESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 357889999999998765
No 42
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=24.65 E-value=18 Score=24.77 Aligned_cols=26 Identities=12% Similarity=0.136 Sum_probs=18.0
Q ss_pred eEEeecccccccchhHHHHHHHHhcC
Q 043438 12 DVFVSFRAEDTRDNFTSHLYSALSRQ 37 (146)
Q Consensus 12 dVFiSfrg~Dtr~~Fv~~L~~aL~~~ 37 (146)
.-|.|||......-||..|++.|++.
T Consensus 26 pGyvS~R~~~~GSwFIQ~Lc~vl~~~ 51 (117)
T 3rjm_B 26 KGTAAMRNTKRGSWYIEALAQVFSER 51 (117)
T ss_dssp TTCCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCeECeeecCCCChHHHHHHHHHHHh
Confidence 34566777666677888888888654
No 43
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=24.57 E-value=52 Score=21.38 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||..++..
T Consensus 103 ~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 103 ATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp SSHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 3578899999999998764
No 44
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.51 E-value=50 Score=20.91 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=16.2
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 043438 119 ENSEKLQTWRNALKAAASLS 138 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~~ 138 (146)
++.+..+.|..||..+....
T Consensus 92 ~s~~e~~~Wi~al~~~~~~~ 111 (117)
T 2d9y_A 92 ESPEEQEAWIQAMGEAARVQ 111 (117)
T ss_dssp SSHHHHHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 35788999999999987643
No 45
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=24.51 E-value=42 Score=22.20 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.2
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||.+++.-
T Consensus 102 ~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 102 DKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CCCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3578899999999988753
No 46
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=24.38 E-value=48 Score=21.43 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=15.7
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||..++..
T Consensus 102 ~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 102 DTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999988764
No 47
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.37 E-value=46 Score=23.32 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.2
Q ss_pred cChHHHHHHHHHHHHhhcccC
Q 043438 119 ENSEKLQTWRNALKAAASLSG 139 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~~G 139 (146)
++.+..+.|..||..|+.++.
T Consensus 96 ~s~ee~~eWi~aI~~v~~~~~ 116 (149)
T 1x1f_A 96 ENTESGEEWRGFILTVTELSV 116 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcccC
Confidence 357889999999999988653
No 48
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.32 E-value=45 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=15.5
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+....|..||..+..-
T Consensus 95 ~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 95 SSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 3578899999999998753
No 49
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.19 E-value=45 Score=21.66 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=15.0
Q ss_pred cChHHHHHHHHHHHHhhc
Q 043438 119 ENSEKLQTWRNALKAAAS 136 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~ 136 (146)
++.+.++.|..||..++.
T Consensus 100 ~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 100 KDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 357889999999998865
No 50
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=23.33 E-value=49 Score=20.41 Aligned_cols=18 Identities=6% Similarity=0.283 Sum_probs=14.6
Q ss_pred cChHHHHHHHHHHHHhhc
Q 043438 119 ENSEKLQTWRNALKAAAS 136 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~ 136 (146)
++.+..+.|..||..+..
T Consensus 88 ~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 88 TSPAEARDWVDQISFLLK 105 (108)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 357889999999998754
No 51
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.65 E-value=51 Score=20.77 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=15.5
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||..+...
T Consensus 86 ~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 86 SDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3578899999999988754
No 52
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=51 Score=21.33 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=15.5
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||..+...
T Consensus 87 ~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 87 TDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3578899999999987654
No 53
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=55 Score=21.21 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=14.3
Q ss_pred cChHHHHHHHHHHHHhh
Q 043438 119 ENSEKLQTWRNALKAAA 135 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~ 135 (146)
++.+..++|..||..+.
T Consensus 87 ~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 87 ATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45788999999999875
No 54
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=22.18 E-value=52 Score=21.09 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.0
Q ss_pred cChHHHHHHHHHHHHhhc
Q 043438 119 ENSEKLQTWRNALKAAAS 136 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~ 136 (146)
++.+..+.|..||..+..
T Consensus 103 ~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 103 PSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357889999999998765
No 55
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=21.75 E-value=86 Score=25.54 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=34.8
Q ss_pred ce-EEeecccc----cccchhHHHHHHHHhcCCeee-eccCccCCCCcchHHHHHHhhhCccc--c--cHHHHHHHHHHH
Q 043438 11 YD-VFVSFRAE----DTRDNFTSHLYSALSRQNIQT-FIDDQLNRGDDISESLLNAMKHQPFQ--S--CLDELEKILECK 80 (146)
Q Consensus 11 yd-VFiSfrg~----Dtr~~Fv~~L~~aL~~~gi~~-f~d~~~~~G~~i~~~l~~aI~~S~is--w--Cl~EL~~i~~~~ 80 (146)
|+ ||=...|. -..-.|+..|.++|+.+||.. |+-=..-.|.-..-. +-|++=++. | .-.|-+.++...
T Consensus 169 YQTVyAk~~GsvAAPTAGLHFt~~Ll~~L~~kGv~~a~vTLHVG~GTF~PV~--e~i~~H~MHsE~~~V~~~ta~~in~a 246 (345)
T 1wdi_A 169 YQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK--GDPEKHEMHAEPYAIPEEVAEAVNRA 246 (345)
T ss_dssp ------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC-----------CCCEEEEECHHHHHHHHHH
T ss_pred hhhhhcCCCChhhcCCCCCCCCHHHHHHHHHCCCeEEEEEEeecCCCCcccc--cchhcCCccceEEEECHHHHHHHHHH
Confidence 44 55555553 235689999999999999964 432112223211111 334444443 3 244555566655
Q ss_pred hhCCcEEEeE
Q 043438 81 REYGQIVIPV 90 (146)
Q Consensus 81 ~~~~~~VlPV 90 (146)
+..|..|+.|
T Consensus 247 ka~G~RViAV 256 (345)
T 1wdi_A 247 KAEGRRVVAV 256 (345)
T ss_dssp HHTTCCEEEE
T ss_pred HHcCCeEEEE
Confidence 5666667666
No 56
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=21.64 E-value=26 Score=23.58 Aligned_cols=42 Identities=10% Similarity=0.210 Sum_probs=28.5
Q ss_pred eeecCcccccccCchHHHHHHHHHHhcc--ChHHHHHHHHHHHHhhcc
Q 043438 92 YRVDPSDVRNQTGSFGISFSKLEERFKE--NSEKLQTWRNALKAAASL 137 (146)
Q Consensus 92 Y~V~psdVr~q~g~f~~af~~~~~~~~~--~~e~v~~W~~AL~~v~~~ 137 (146)
|+|+|.+-.. +|+++...-+..+. +++-..-|..++..+++.
T Consensus 84 ~gV~p~~f~~----~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~ 127 (134)
T 1tu9_A 84 LDIRPELYDL----WLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAV 127 (134)
T ss_dssp TCCCTTHHHH----HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHH----HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3567776553 56666655444442 578888999999998864
No 57
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.72 E-value=56 Score=20.64 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=15.4
Q ss_pred cChHHHHHHHHHHHHhhcc
Q 043438 119 ENSEKLQTWRNALKAAASL 137 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~ 137 (146)
++.+..+.|..||..+..-
T Consensus 94 ~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 94 QDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp SSHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 3578899999999987654
No 58
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=20.46 E-value=56 Score=22.77 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.0
Q ss_pred ccccchhHHHHHHHHhcCCeee
Q 043438 20 EDTRDNFTSHLYSALSRQNIQT 41 (146)
Q Consensus 20 ~Dtr~~Fv~~L~~aL~~~gi~~ 41 (146)
.|+-.+|++.+.....+.|+.+
T Consensus 62 rD~AfnFa~~~tR~a~~hGlp~ 83 (125)
T 2k4v_A 62 RDTAFNFASDATRVAQKHGLHP 83 (125)
T ss_dssp TTTGGGHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 3777899999999999999865
No 59
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.27 E-value=69 Score=21.61 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.2
Q ss_pred cChHHHHHHHHHHHHhhccc
Q 043438 119 ENSEKLQTWRNALKAAASLS 138 (146)
Q Consensus 119 ~~~e~v~~W~~AL~~v~~~~ 138 (146)
++++..+.|.+||..+....
T Consensus 107 ~s~~e~~~Wi~ai~~a~~~~ 126 (130)
T 1v88_A 107 TSESDGRCWMDALELALKSG 126 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 45788999999999987643
Done!