BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043440
(850 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 386 KRGKVSEACNLWQKMVSSGVRPSVVSYNNMI----LAHCTVKN-----MDEAYSVFSEML 436
K+G V EA L+ + +GV+ S YN ++ LA ++ + + +F +M+
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 437 EKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTS 496
+V PN T++ + D E AFD++ QM+ I P + + G C+ G
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 497 VAWD 500
A++
Sbjct: 158 KAYE 161
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 456 KQGDAERAFDVLDQMENAKISPTDYTSNII--INGLCKAGRTSV-------AWDKLKKMV 506
K+GD A + D+ + + Y N++ + L +A S +D K+M+
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 507 EKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEID 566
+P T+ + V +DD A + ++M G+ P + +Y + GFCRK + D
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 567 LALKMRNEM 575
A ++ M
Sbjct: 158 KAYEVDAHM 166
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 312 IEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLL--CGFLKAQL-------LEEAYKL 362
++ C G V + LY + + G++ S + N LL C +A L + +
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 363 FDEA-VDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCT 421
F + VD + N T+ + + A ++ ++M + G++P + SY + C
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Query: 422 VKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMEN 472
+ D+AY V + M+E V P + L+ +A++ + L ++ +
Sbjct: 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 536 VYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFC 595
++++M + PN T+T K++ ++A M +M G+Q +YG + GFC
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 596 RRRDMESACKLFAEL 610
R+ D + A ++ A +
Sbjct: 152 RKGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 386 KRGKVSEACNLWQKMVSSGVRPSVVSYNNMI----LAHCTVKN-----MDEAYSVFSEML 436
K+G V EA L+ + +GV+ S YN ++ LA ++ + + +F + +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXI 97
Query: 437 EKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTS 496
+V PN T++ + D E AFD + Q + I P + + G C+ G
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 497 VAWD 500
A++
Sbjct: 158 KAYE 161
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 451 IDGYFKQGDAERAFDVLDQMENAKISPTDYTSNII--INGLCKAGRTSV-------AWDK 501
+D K+GD A + D+ + + Y N++ + L +A S +D
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 502 LKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCR 561
K+ + +P T+ + V +DD A ++ G+ P + +Y + GFCR
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 562 KNEIDLALKM 571
K + D A ++
Sbjct: 153 KGDADKAYEV 162
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 312 IEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLL--CGFLKAQL-------LEEAYKL 362
++ C G V + LY + + G++ S + N LL C +A L + +
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 363 FDEA-VDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCT 421
F + VD + N T+ + + A + ++ + G++P + SY + C
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 422 VKNMDEAYSV 431
+ D+AY V
Sbjct: 153 KGDADKAYEV 162
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 533 ALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLIN 592
++++ + PN T+T K++ + A + G+Q +YG +
Sbjct: 89 GFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALF 148
Query: 593 GFCRRRDMESA 603
GFCR+ D + A
Sbjct: 149 GFCRKGDADKA 159
>pdb|1YG2|A Chain A, Structure Of The Vibrio Cholerae Virulence Activator Apha
Length = 179
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 733 GYFKEGNLQEAFRLHNEMLDKGLV----------PDDTTYDILVNGKSRSDTWARKKEKM 782
GYF + + Q+ +R N+M ++GLV PD Y I G+S W +
Sbjct: 30 GYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTAH 89
Query: 783 PACRKHHSMRIELLELPRMSNYR---KVLVRSSSQLM 816
P R S ++ + YR LV S +L+
Sbjct: 90 PTVRDEFSAKLMACSVQSAEPYRLQLAELVEESRKLV 126
>pdb|1B89|A Chain A, Clathrin Heavy Chain Proximal Leg Segment (Bovine)
Length = 449
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 499 WDKLKK-MVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILIN 557
W +L K ++KG + + ID ++K DD S + V + + SG +V Y +
Sbjct: 35 WSQLAKAQLQKGMVKEA------IDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88
Query: 558 GFCRKN----EIDLALKMRNEM--MNEGLQLDATAYGSLINGFCRRRDMESACKLFAELL 611
R++ E+ AL N + + E + A+ + C M A KL
Sbjct: 89 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKL----- 143
Query: 612 EVGLSPNTVVYNSMINGFRNLGNMEAALDMHRK 644
L N + + + +LG +AA+D RK
Sbjct: 144 ---LYNNVSNFGRLASTLVHLGEYQAAVDGARK 173
>pdb|3LVG|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVG|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Lig Complex
pdb|3LVH|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 624
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 499 WDKLKK-MVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILIN 557
W +L K ++KG + + ID ++K DD S + V + + SG +V Y +
Sbjct: 57 WSQLAKAQLQKGMVKEA------IDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMAR 110
Query: 558 GFCRKN----EIDLALKMRNEM--MNEGLQLDATAYGSLINGFCRRRDMESACKLFAELL 611
R++ E+ AL N + + E + A+ + C M A KL
Sbjct: 111 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKL----- 165
Query: 612 EVGLSPNTVVYNSMINGFRNLGNMEAALDMHRK 644
L N + + + +LG +AA+D RK
Sbjct: 166 ---LYNNVSNFGRLASTLVHLGEYQAAVDGARK 195
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 499 WDKLKK-MVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILIN 557
W +L K ++KG + + ID ++K DD S + V + + SG +V Y +
Sbjct: 1108 WSQLAKAQLQKGMVKEA------IDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161
Query: 558 GFCRKN----EIDLALKMRNEM--MNEGLQLDATAYGSLINGFCRRRDMESACKLFAELL 611
R++ E+ AL N + + E + A+ + C M A KL
Sbjct: 1162 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKL----- 1216
Query: 612 EVGLSPNTVVYNSMINGFRNLGNMEAALDMHRK 644
L N + + + +LG +AA+D RK
Sbjct: 1217 ---LYNNVSNFGRLASTLVHLGEYQAAVDGARK 1246
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 84 IETAKRFDFDLDSGVFSY--------LLRSYVRADRINDAVD--CCNGMIERDIIPLLRS 133
I K+ F DSGVFSY +L V D+ +D +D C G+I I L
Sbjct: 17 ILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIG---IALADE 73
Query: 134 MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVM 172
+ S A + R I AKE N+K +D+ IRV+
Sbjct: 74 VKSTTXADINRRAIKLAKE-----NIKLNNLDNYDIRVV 107
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294
+ + NL A K G+ EA + + P N +L YYKQGD A+E
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 295 KIKEDGLSPN 304
K E L PN
Sbjct: 68 KALE--LDPN 75
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294
+ + NL A K G+ EA + + P N +L YYKQGD A+E
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 295 KIKEDGLSPN 304
K E L PN
Sbjct: 68 KALE--LDPN 75
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294
+ + NL A K G+ EA + + P N +L YYKQGD A+E
Sbjct: 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 295 KIKEDGLSPN 304
K E L PN
Sbjct: 102 KALE--LDPN 109
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 175 ACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVP 234
A K+ +EA +Y++ A L + A A+ + A ++ + A ++ ++
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294
+ + NL A K G+ EA + + P + +L YYKQGD A+E
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 295 KIKE 298
K E
Sbjct: 128 KALE 131
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 268 MNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTN------GKV 321
+ L + ++M G+ +QG + +L +K+ GL+P+ +++A ++ C G +
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ--CMGRQDQDAGTI 220
Query: 322 EKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKL 362
E+ E QM G+K LL +A +L+ +K+
Sbjct: 221 ERCLE---QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
>pdb|3NI9|A Chain A, Ges-2 Carbapenemase Apo Form
pdb|3NI9|B Chain B, Ges-2 Carbapenemase Apo Form
pdb|3NIA|A Chain A, Ges-2 Carbapenemase Tazobactam Complex
Length = 269
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 624 SMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYS 678
+M FR +G+ + LD +ND P DL+ TT IA K+L L S
Sbjct: 124 AMTQYFRKIGDSVSRLDRKEPEMNDNTPGDLRDTTTPIAMARTVAKVLYGGALTS 178
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294
+ + NL A K G+ +A + + P N +L YYKQGD A+E
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALEL-DPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 295 KIKEDGLSPN 304
K E L PN
Sbjct: 68 KALE--LDPN 75
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294
+ + NL A K G+ EA + + P N +L YYKQGD A+E
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-YPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 295 KIKEDGLSPN 304
K E L PN
Sbjct: 68 KALE--LYPN 75
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294
+ + NL A K G+ EA + + P N +L YYKQGD A+E
Sbjct: 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-YPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 295 KIKEDGLSPN 304
K E L PN
Sbjct: 102 KALE--LYPN 109
>pdb|3GSD|A Chain A, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|B Chain B, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|C Chain C, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|D Chain D, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|E Chain E, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|F Chain F, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|G Chain G, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|H Chain H, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|I Chain I, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|J Chain J, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|K Chain K, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|L Chain L, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
Length = 122
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 407 PSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDV 466
P+ VSY+N I+ CT + A ++ +++L +++ V Y+ +G E+ ++V
Sbjct: 13 PNAVSYSNAIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEV 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,186,946
Number of Sequences: 62578
Number of extensions: 1005440
Number of successful extensions: 3265
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3213
Number of HSP's gapped (non-prelim): 56
length of query: 850
length of database: 14,973,337
effective HSP length: 107
effective length of query: 743
effective length of database: 8,277,491
effective search space: 6150175813
effective search space used: 6150175813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)