Query 043440
Match_columns 850
No_of_seqs 880 out of 4681
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 05:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-85 4.3E-90 761.1 72.4 719 37-804 48-769 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 5.2E-83 1.1E-87 740.9 74.4 690 93-808 48-757 (857)
3 PLN03218 maturation of RBCL 1; 100.0 7.6E-69 1.6E-73 606.0 71.9 545 198-760 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 6.6E-68 1.4E-72 598.4 72.2 543 130-690 369-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-62 2.6E-67 556.8 49.4 478 267-760 84-564 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.7E-61 1.5E-65 542.5 51.4 474 163-651 84-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-47 1.7E-51 452.8 99.3 799 9-837 27-875 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-46 8.1E-51 447.0 99.2 799 1-826 53-898 (899)
9 PRK11447 cellulose synthase su 100.0 3E-31 6.6E-36 315.4 78.8 638 99-752 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.4E-31 9.6E-36 314.0 80.1 656 13-717 37-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 7.6E-26 1.6E-30 255.6 72.9 631 104-778 52-730 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-25 4.2E-30 252.3 75.1 664 47-775 51-760 (987)
13 KOG2002 TPR-containing nuclear 100.0 2.3E-25 5.1E-30 233.3 64.4 659 95-764 40-756 (1018)
14 KOG2002 TPR-containing nuclear 100.0 1.9E-24 4.1E-29 226.5 68.6 706 18-756 25-801 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 8.6E-27 1.9E-31 231.0 37.0 482 310-808 53-539 (966)
16 KOG4626 O-linked N-acetylgluco 100.0 5.3E-24 1.2E-28 211.4 41.6 448 204-665 51-501 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-20 2.8E-25 211.0 53.5 430 308-754 130-572 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-20 1.6E-24 204.9 53.5 429 238-717 130-570 (615)
19 PRK11788 tetratricopeptide rep 99.9 9.7E-22 2.1E-26 209.4 34.7 327 453-792 44-381 (389)
20 KOG2076 RNA polymerase III tra 99.9 5.7E-17 1.2E-21 170.0 62.0 372 40-436 139-553 (895)
21 PRK11788 tetratricopeptide rep 99.9 1.7E-20 3.7E-25 199.9 35.7 296 213-513 47-352 (389)
22 PRK15174 Vi polysaccharide exp 99.9 4.8E-19 1E-23 197.0 48.2 332 135-473 46-381 (656)
23 PRK15174 Vi polysaccharide exp 99.9 4E-19 8.7E-24 197.7 47.2 332 99-438 45-381 (656)
24 KOG2076 RNA polymerase III tra 99.9 8.4E-17 1.8E-21 168.8 60.6 657 104-780 147-887 (895)
25 KOG0495 HAT repeat protein [RN 99.9 3.6E-15 7.9E-20 150.3 65.5 510 184-752 364-879 (913)
26 KOG0495 HAT repeat protein [RN 99.9 1.6E-15 3.5E-20 152.7 62.6 602 144-780 264-872 (913)
27 PRK10049 pgaA outer membrane p 99.9 8.2E-18 1.8E-22 191.7 52.5 417 303-754 13-457 (765)
28 PRK10049 pgaA outer membrane p 99.9 5.7E-18 1.2E-22 193.0 49.3 420 268-730 13-466 (765)
29 PRK14574 hmsH outer membrane p 99.9 2E-16 4.2E-21 176.0 56.2 195 522-718 300-513 (822)
30 PRK14574 hmsH outer membrane p 99.9 3.2E-16 7E-21 174.2 54.7 446 138-612 41-512 (822)
31 KOG2003 TPR repeat-containing 99.8 6.5E-17 1.4E-21 155.4 37.0 501 201-775 201-710 (840)
32 KOG1915 Cell cycle control pro 99.8 1.8E-14 3.9E-19 139.9 50.9 450 165-627 72-548 (677)
33 KOG2003 TPR repeat-containing 99.8 5.7E-15 1.2E-19 142.2 36.5 287 349-644 428-718 (840)
34 KOG1915 Cell cycle control pro 99.8 4.8E-13 1E-17 130.1 49.1 438 200-648 72-536 (677)
35 KOG4318 Bicoid mRNA stability 99.7 2.5E-13 5.4E-18 142.1 44.2 650 82-773 11-753 (1088)
36 KOG4422 Uncharacterized conser 99.7 9.7E-13 2.1E-17 126.4 44.0 449 168-684 118-591 (625)
37 KOG0547 Translocase of outer m 99.7 4.3E-14 9.3E-19 138.1 34.2 220 524-752 336-565 (606)
38 KOG2047 mRNA splicing factor [ 99.7 5.6E-10 1.2E-14 113.4 62.8 636 39-739 26-709 (835)
39 KOG4422 Uncharacterized conser 99.7 2.4E-12 5.2E-17 123.7 43.2 447 269-755 115-592 (625)
40 KOG1155 Anaphase-promoting com 99.7 7.7E-12 1.7E-16 121.8 46.0 330 337-682 161-494 (559)
41 KOG1155 Anaphase-promoting com 99.7 5.2E-12 1.1E-16 123.0 44.3 363 372-752 162-535 (559)
42 KOG1173 Anaphase-promoting com 99.7 2.6E-12 5.5E-17 128.5 41.8 508 200-770 15-533 (611)
43 KOG0547 Translocase of outer m 99.7 5.9E-13 1.3E-17 130.2 36.0 219 492-717 339-565 (606)
44 KOG4162 Predicted calmodulin-b 99.6 2.1E-10 4.7E-15 119.3 51.9 410 336-754 319-784 (799)
45 KOG1173 Anaphase-promoting com 99.6 1.3E-11 2.8E-16 123.6 40.4 510 94-629 14-532 (611)
46 KOG3785 Uncharacterized conser 99.6 2.1E-11 4.6E-16 114.4 39.3 363 380-773 157-535 (557)
47 KOG2047 mRNA splicing factor [ 99.6 4.3E-09 9.3E-14 107.1 57.8 544 201-774 102-709 (835)
48 KOG1126 DNA-binding cell divis 99.6 1.1E-13 2.3E-18 141.4 25.3 285 111-404 334-621 (638)
49 TIGR00540 hemY_coli hemY prote 99.6 1.3E-12 2.9E-17 138.1 35.0 289 143-435 96-396 (409)
50 PRK10747 putative protoheme IX 99.6 2.2E-12 4.7E-17 135.6 36.2 285 144-436 97-388 (398)
51 KOG3785 Uncharacterized conser 99.6 4.3E-11 9.2E-16 112.4 39.9 275 176-471 32-312 (557)
52 TIGR00540 hemY_coli hemY prote 99.6 1.5E-12 3.2E-17 137.7 34.7 292 177-506 95-397 (409)
53 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.5E-18 140.1 25.9 289 459-759 334-626 (638)
54 PRK10747 putative protoheme IX 99.6 1.8E-12 3.9E-17 136.2 34.6 290 178-505 96-387 (398)
55 PF13429 TPR_15: Tetratricopep 99.6 2.3E-15 5E-20 151.1 11.8 262 484-752 13-276 (280)
56 KOG1127 TPR repeat-containing 99.6 8.5E-10 1.8E-14 117.7 52.7 645 96-766 492-1187(1238)
57 PF13429 TPR_15: Tetratricopep 99.6 4.2E-15 9.1E-20 149.3 12.7 260 206-471 13-275 (280)
58 KOG1127 TPR repeat-containing 99.6 5.3E-10 1.2E-14 119.2 49.6 581 146-753 473-1104(1238)
59 KOG4318 Bicoid mRNA stability 99.6 3.9E-11 8.4E-16 126.1 40.1 152 622-780 462-617 (1088)
60 COG2956 Predicted N-acetylgluc 99.6 6.8E-12 1.5E-16 116.5 30.1 288 215-507 49-346 (389)
61 KOG1156 N-terminal acetyltrans 99.6 5E-10 1.1E-14 114.2 45.8 463 272-751 10-509 (700)
62 KOG4162 Predicted calmodulin-b 99.6 4E-10 8.8E-15 117.3 45.7 441 232-718 319-783 (799)
63 COG2956 Predicted N-acetylgluc 99.6 1.4E-11 3.1E-16 114.4 31.1 286 283-577 48-346 (389)
64 KOG1156 N-terminal acetyltrans 99.6 8.7E-10 1.9E-14 112.5 45.8 456 178-647 19-510 (700)
65 KOG0985 Vesicle coat protein c 99.5 4.1E-08 8.9E-13 104.9 57.8 706 15-778 339-1268(1666)
66 KOG0985 Vesicle coat protein c 99.5 6.7E-08 1.5E-12 103.4 56.9 198 548-780 1103-1300(1666)
67 COG3071 HemY Uncharacterized e 99.5 4.4E-10 9.6E-15 108.3 37.2 286 282-576 96-388 (400)
68 COG3071 HemY Uncharacterized e 99.5 2E-10 4.3E-15 110.7 33.6 286 178-472 96-389 (400)
69 KOG3617 WD40 and TPR repeat-co 99.5 2.9E-08 6.2E-13 103.8 49.9 544 141-762 738-1368(1416)
70 KOG3616 Selective LIM binding 99.5 1.3E-07 2.9E-12 97.7 51.6 580 98-750 663-1351(1636)
71 PRK12370 invasion protein regu 99.5 4.4E-11 9.6E-16 131.5 28.6 251 145-403 275-535 (553)
72 PRK12370 invasion protein regu 99.4 8.9E-11 1.9E-15 129.1 28.5 148 251-401 320-468 (553)
73 KOG1129 TPR repeat-containing 99.4 1.8E-11 3.9E-16 113.6 19.0 232 518-755 227-460 (478)
74 KOG1174 Anaphase-promoting com 99.4 6.1E-08 1.3E-12 93.7 42.5 266 269-543 231-500 (564)
75 KOG1174 Anaphase-promoting com 99.4 2.8E-08 6E-13 96.0 40.0 400 237-656 99-507 (564)
76 TIGR02521 type_IV_pilW type IV 99.4 3E-10 6.6E-15 111.6 27.8 200 549-752 31-231 (234)
77 KOG2376 Signal recognition par 99.4 6.1E-08 1.3E-12 98.3 43.4 148 599-750 356-517 (652)
78 TIGR02521 type_IV_pilW type IV 99.4 2.8E-10 6.2E-15 111.8 26.6 195 134-332 34-230 (234)
79 KOG1129 TPR repeat-containing 99.4 4.2E-11 9.2E-16 111.2 18.5 228 171-402 228-457 (478)
80 PF12569 NARP1: NMDA receptor- 99.4 4.5E-08 9.6E-13 103.7 43.5 128 448-577 198-333 (517)
81 KOG2376 Signal recognition par 99.4 8.1E-08 1.8E-12 97.4 42.3 465 207-715 18-517 (652)
82 KOG3616 Selective LIM binding 99.4 3.6E-07 7.7E-12 94.6 47.4 581 104-780 498-1126(1636)
83 KOG3617 WD40 and TPR repeat-co 99.4 1.6E-07 3.6E-12 98.4 45.1 236 16-297 740-994 (1416)
84 KOG0624 dsRNA-activated protei 99.3 9.1E-09 2E-13 96.7 30.6 299 443-752 37-369 (504)
85 PF12569 NARP1: NMDA receptor- 99.3 4.7E-08 1E-12 103.5 39.8 305 103-437 11-333 (517)
86 KOG1840 Kinesin light chain [C 99.3 6.2E-10 1.4E-14 115.8 24.8 196 172-367 247-477 (508)
87 KOG1840 Kinesin light chain [C 99.3 2.3E-09 5E-14 111.6 27.8 236 516-751 201-477 (508)
88 KOG0624 dsRNA-activated protei 99.3 1.9E-08 4.1E-13 94.6 30.7 305 93-403 35-370 (504)
89 KOG0548 Molecular co-chaperone 99.3 2.9E-08 6.3E-13 99.7 32.3 221 378-614 228-456 (539)
90 KOG0548 Molecular co-chaperone 99.3 4.1E-08 8.8E-13 98.7 32.9 446 277-771 9-471 (539)
91 COG3063 PilF Tfp pilus assembl 99.3 7.6E-09 1.6E-13 92.3 24.7 193 137-333 41-235 (250)
92 COG3063 PilF Tfp pilus assembl 99.3 7E-09 1.5E-13 92.5 24.3 198 237-437 37-235 (250)
93 PRK11189 lipoprotein NlpI; Pro 99.2 5E-09 1.1E-13 105.2 26.8 119 144-263 39-160 (296)
94 PRK11189 lipoprotein NlpI; Pro 99.2 5.2E-09 1.1E-13 105.1 26.4 152 108-262 38-192 (296)
95 KOG4340 Uncharacterized conser 99.2 2.1E-08 4.6E-13 92.4 25.8 320 99-469 13-335 (459)
96 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 3.9E-12 98.3 35.7 200 96-298 6-214 (355)
97 KOG4340 Uncharacterized conser 99.2 4.3E-08 9.3E-13 90.4 26.2 313 204-539 13-335 (459)
98 PF13041 PPR_2: PPR repeat fam 99.1 1.4E-10 3E-15 80.3 6.7 49 722-770 1-49 (50)
99 cd05804 StaR_like StaR_like; a 99.1 2.6E-07 5.5E-12 97.1 34.2 92 345-436 119-213 (355)
100 PF13041 PPR_2: PPR repeat fam 99.1 2.3E-10 4.9E-15 79.2 6.5 49 687-735 1-49 (50)
101 KOG1125 TPR repeat-containing 99.1 1.6E-08 3.5E-13 102.4 20.5 224 208-437 292-526 (579)
102 KOG2053 Mitochondrial inherita 99.0 7.6E-05 1.6E-09 80.4 46.0 93 518-612 440-535 (932)
103 KOG1125 TPR repeat-containing 99.0 4.2E-08 9E-13 99.5 20.7 224 174-402 293-526 (579)
104 PRK04841 transcriptional regul 99.0 3.7E-06 8E-11 100.5 40.2 266 134-401 344-639 (903)
105 PRK04841 transcriptional regul 99.0 4.7E-06 1E-10 99.6 39.7 374 97-472 342-759 (903)
106 PF04733 Coatomer_E: Coatomer 99.0 3.1E-08 6.7E-13 97.7 16.9 238 524-777 11-253 (290)
107 PLN02789 farnesyltranstransfer 98.9 1.2E-06 2.5E-11 87.8 27.8 222 523-750 46-299 (320)
108 KOG2053 Mitochondrial inherita 98.9 0.00021 4.6E-09 77.1 46.7 531 177-751 20-606 (932)
109 KOG1914 mRNA cleavage and poly 98.9 0.00012 2.6E-09 74.3 39.8 187 565-753 309-501 (656)
110 PLN02789 farnesyltranstransfer 98.9 1.3E-06 2.9E-11 87.3 26.7 204 214-421 50-267 (320)
111 PF04733 Coatomer_E: Coatomer 98.9 1.8E-07 4E-12 92.2 19.5 129 270-402 131-264 (290)
112 KOG1914 mRNA cleavage and poly 98.8 0.00023 4.9E-09 72.3 41.1 210 495-707 309-528 (656)
113 KOG1070 rRNA processing protei 98.8 2.6E-06 5.7E-11 95.1 27.3 236 187-426 1445-1688(1710)
114 KOG1128 Uncharacterized conser 98.7 2.4E-06 5.2E-11 89.4 22.4 224 91-334 393-616 (777)
115 TIGR03302 OM_YfiO outer membra 98.7 1.7E-06 3.7E-11 84.6 20.8 189 93-299 30-232 (235)
116 TIGR03302 OM_YfiO outer membra 98.7 2.6E-06 5.7E-11 83.2 21.8 183 201-403 33-232 (235)
117 KOG1128 Uncharacterized conser 98.7 5.5E-06 1.2E-10 86.8 24.0 217 480-717 399-615 (777)
118 KOG1070 rRNA processing protei 98.7 1E-05 2.3E-10 90.5 26.6 218 221-442 1444-1667(1710)
119 COG5010 TadD Flp pilus assembl 98.7 6.7E-06 1.5E-10 75.7 20.4 156 239-397 70-225 (257)
120 PRK10370 formate-dependent nit 98.6 5.5E-06 1.2E-10 77.2 19.9 122 631-755 51-175 (198)
121 COG5010 TadD Flp pilus assembl 98.6 5.7E-06 1.2E-10 76.2 19.2 159 274-435 70-228 (257)
122 PRK10370 formate-dependent nit 98.6 7.3E-06 1.6E-10 76.4 20.5 119 597-718 52-173 (198)
123 PRK15179 Vi polysaccharide bio 98.6 1.3E-05 2.8E-10 88.8 25.2 130 237-369 88-217 (694)
124 PRK15359 type III secretion sy 98.6 3.9E-06 8.5E-11 73.8 17.1 90 626-717 31-120 (144)
125 KOG3081 Vesicle coat complex C 98.6 3.1E-05 6.6E-10 71.3 22.6 259 524-804 18-281 (299)
126 KOG3060 Uncharacterized conser 98.6 6.9E-05 1.5E-09 68.5 23.4 188 563-755 26-222 (289)
127 PRK14720 transcript cleavage f 98.5 4.4E-05 9.5E-10 85.3 27.0 239 93-385 28-268 (906)
128 PRK14720 transcript cleavage f 98.5 2.3E-05 5.1E-10 87.4 24.8 169 200-403 30-198 (906)
129 PRK15359 type III secretion sy 98.5 6.8E-06 1.5E-10 72.2 16.7 101 276-378 30-130 (144)
130 PRK15179 Vi polysaccharide bio 98.5 3.5E-05 7.7E-10 85.4 25.9 202 197-416 24-229 (694)
131 COG4783 Putative Zn-dependent 98.5 0.00024 5.2E-09 71.7 28.7 118 177-296 317-434 (484)
132 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.3E-12 57.5 4.3 32 719-750 2-33 (34)
133 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.9E-12 57.7 4.1 32 684-715 2-33 (34)
134 KOG3060 Uncharacterized conser 98.5 0.00011 2.5E-09 67.1 22.7 190 179-371 25-222 (289)
135 COG4783 Putative Zn-dependent 98.4 0.00019 4E-09 72.5 25.0 140 314-473 315-454 (484)
136 KOG3081 Vesicle coat complex C 98.4 0.00033 7.2E-09 64.7 24.2 140 348-497 116-259 (299)
137 TIGR02552 LcrH_SycD type III s 98.4 1.3E-05 2.8E-10 70.4 14.7 111 641-754 5-115 (135)
138 TIGR02552 LcrH_SycD type III s 98.3 2.7E-05 5.8E-10 68.4 15.3 110 606-718 5-114 (135)
139 KOG0550 Molecular chaperone (D 98.3 0.00039 8.6E-09 68.3 23.2 280 99-403 52-350 (486)
140 PF09976 TPR_21: Tetratricopep 98.2 4.9E-05 1.1E-09 67.2 15.3 115 214-330 24-143 (145)
141 PF09976 TPR_21: Tetratricopep 98.2 8E-05 1.7E-09 65.9 15.9 125 622-750 15-144 (145)
142 KOG0550 Molecular chaperone (D 98.2 0.00048 1E-08 67.7 21.2 183 585-772 169-370 (486)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00021 4.6E-09 73.1 16.9 122 623-751 173-295 (395)
144 PF14938 SNAP: Soluble NSF att 98.0 0.0014 3E-08 65.5 22.0 61 273-333 158-224 (282)
145 PF14938 SNAP: Soluble NSF att 98.0 0.0014 3.1E-08 65.4 22.0 127 216-371 89-227 (282)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.5E-09 72.5 16.1 125 586-717 171-296 (395)
147 KOG1130 Predicted G-alpha GTPa 98.0 0.00011 2.4E-09 71.7 12.6 284 105-403 26-344 (639)
148 KOG2041 WD40 repeat protein [G 98.0 0.0089 1.9E-07 62.9 26.3 204 267-505 689-904 (1189)
149 COG4700 Uncharacterized protei 97.9 0.0028 6E-08 55.2 18.6 133 163-297 86-220 (251)
150 PRK02603 photosystem I assembl 97.9 0.0006 1.3E-08 62.5 16.1 89 237-326 37-127 (172)
151 KOG0553 TPR repeat-containing 97.9 0.00014 3E-09 68.7 11.6 96 664-764 91-187 (304)
152 PF07079 DUF1347: Protein of u 97.9 0.038 8.2E-07 55.7 47.2 204 550-764 299-530 (549)
153 PRK10866 outer membrane biogen 97.9 0.0027 5.8E-08 61.3 20.5 176 206-400 37-238 (243)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00045 9.7E-09 58.9 13.8 99 656-756 4-108 (119)
155 TIGR00756 PPR pentatricopeptid 97.9 2.8E-05 6.2E-10 48.9 4.6 33 726-758 2-34 (35)
156 PRK10153 DNA-binding transcrip 97.8 0.0016 3.5E-08 70.2 19.7 119 635-756 358-485 (517)
157 cd00189 TPR Tetratricopeptide 97.8 0.00034 7.4E-09 56.8 11.7 94 657-752 3-96 (100)
158 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00061 1.3E-08 58.1 13.5 92 207-298 8-104 (119)
159 KOG1130 Predicted G-alpha GTPa 97.8 0.00044 9.5E-09 67.7 12.5 285 381-681 24-342 (639)
160 COG3898 Uncharacterized membra 97.8 0.053 1.2E-06 53.4 31.3 190 282-477 96-296 (531)
161 KOG0553 TPR repeat-containing 97.7 0.00045 9.7E-09 65.4 12.1 95 594-692 91-185 (304)
162 PF05843 Suf: Suppressor of fo 97.7 0.00076 1.7E-08 67.0 14.3 146 620-770 2-151 (280)
163 PF13812 PPR_3: Pentatricopept 97.7 5.6E-05 1.2E-09 47.1 4.1 33 725-757 2-34 (34)
164 PRK15363 pathogenicity island 97.7 0.00077 1.7E-08 58.1 12.1 86 594-681 45-130 (157)
165 cd00189 TPR Tetratricopeptide 97.7 0.00056 1.2E-08 55.4 11.4 53 348-400 42-94 (100)
166 PF13525 YfiO: Outer membrane 97.7 0.0053 1.1E-07 57.8 19.2 61 204-264 8-71 (203)
167 PRK10866 outer membrane biogen 97.7 0.0072 1.6E-07 58.4 20.4 185 95-297 31-239 (243)
168 PF12895 Apc3: Anaphase-promot 97.7 8.7E-05 1.9E-09 58.3 5.8 20 660-679 31-50 (84)
169 KOG2041 WD40 repeat protein [G 97.7 0.11 2.4E-06 55.2 29.2 155 249-434 748-903 (1189)
170 PF12895 Apc3: Anaphase-promot 97.7 7.8E-05 1.7E-09 58.6 5.4 81 667-749 2-83 (84)
171 COG4700 Uncharacterized protei 97.7 0.012 2.6E-07 51.4 18.6 100 303-402 87-188 (251)
172 PRK15363 pathogenicity island 97.7 0.0012 2.7E-08 56.9 12.8 88 349-437 44-131 (157)
173 PLN03088 SGT1, suppressor of 97.7 0.0012 2.6E-08 68.2 15.3 88 628-717 11-98 (356)
174 PF12688 TPR_5: Tetratrico pep 97.7 0.0031 6.7E-08 52.6 14.6 91 625-717 7-103 (120)
175 TIGR00756 PPR pentatricopeptid 97.6 9.5E-05 2.1E-09 46.5 4.5 33 691-723 2-34 (35)
176 PLN03088 SGT1, suppressor of 97.6 0.00097 2.1E-08 68.9 14.0 88 210-298 11-98 (356)
177 CHL00033 ycf3 photosystem I as 97.6 0.0012 2.5E-08 60.3 13.1 79 237-316 37-117 (168)
178 PRK02603 photosystem I assembl 97.6 0.0024 5.3E-08 58.4 15.0 62 272-333 37-100 (172)
179 COG4235 Cytochrome c biogenesi 97.6 0.0032 7E-08 60.2 15.4 122 641-767 144-268 (287)
180 KOG2796 Uncharacterized conser 97.6 0.069 1.5E-06 49.7 23.3 134 271-404 178-316 (366)
181 PRK10153 DNA-binding transcrip 97.6 0.0043 9.3E-08 67.0 18.0 88 636-727 401-489 (517)
182 PF13812 PPR_3: Pentatricopept 97.5 0.00016 3.4E-09 45.1 4.4 32 691-722 3-34 (34)
183 CHL00033 ycf3 photosystem I as 97.5 0.0024 5.1E-08 58.3 13.9 79 307-385 37-117 (168)
184 PF12688 TPR_5: Tetratrico pep 97.5 0.0043 9.2E-08 51.7 13.9 92 311-402 7-103 (120)
185 PF13525 YfiO: Outer membrane 97.5 0.011 2.4E-07 55.7 18.1 70 40-128 5-74 (203)
186 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.6E-09 44.4 3.1 29 726-754 2-30 (31)
187 PF05843 Suf: Suppressor of fo 97.4 0.0028 6E-08 63.0 14.0 129 307-437 3-135 (280)
188 PF10037 MRP-S27: Mitochondria 97.4 0.0024 5.1E-08 65.9 13.6 123 580-702 62-186 (429)
189 PF13414 TPR_11: TPR repeat; P 97.4 0.00046 1E-08 51.7 6.6 65 688-753 2-67 (69)
190 KOG2796 Uncharacterized conser 97.4 0.079 1.7E-06 49.3 21.4 131 168-299 179-315 (366)
191 COG3898 Uncharacterized membra 97.4 0.16 3.5E-06 50.2 31.9 284 145-438 98-392 (531)
192 PF10037 MRP-S27: Mitochondria 97.4 0.0023 5E-08 65.9 13.0 124 614-737 61-186 (429)
193 PF07079 DUF1347: Protein of u 97.4 0.2 4.3E-06 50.7 44.5 152 43-213 9-179 (549)
194 PF13432 TPR_16: Tetratricopep 97.4 0.0008 1.7E-08 49.7 6.9 58 346-403 3-60 (65)
195 PF14559 TPR_19: Tetratricopep 97.3 0.00064 1.4E-08 50.8 6.4 61 351-413 2-62 (68)
196 KOG1258 mRNA processing protei 97.3 0.29 6.2E-06 51.8 35.3 124 513-639 296-420 (577)
197 COG4235 Cytochrome c biogenesi 97.3 0.011 2.3E-07 56.7 15.6 113 302-417 153-268 (287)
198 PF13414 TPR_11: TPR repeat; P 97.3 0.00089 1.9E-08 50.2 6.8 63 340-402 3-66 (69)
199 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.5E-08 48.8 7.3 57 241-298 3-59 (65)
200 PF01535 PPR: PPR repeat; Int 97.3 0.00032 6.9E-09 42.5 3.2 29 691-719 2-30 (31)
201 KOG1258 mRNA processing protei 97.2 0.46 9.9E-06 50.3 35.9 186 546-738 294-489 (577)
202 PF14559 TPR_19: Tetratricopep 97.2 0.0013 2.8E-08 49.1 6.2 62 700-764 2-63 (68)
203 PF08579 RPM2: Mitochondrial r 97.1 0.0073 1.6E-07 48.2 10.1 78 99-176 28-114 (120)
204 PRK10803 tol-pal system protei 97.1 0.01 2.3E-07 57.7 13.5 96 204-299 146-246 (263)
205 PRK10803 tol-pal system protei 97.1 0.01 2.2E-07 57.8 13.2 98 237-334 145-246 (263)
206 PF08579 RPM2: Mitochondrial r 97.1 0.012 2.6E-07 47.0 10.8 71 559-629 35-114 (120)
207 PF06239 ECSIT: Evolutionarily 97.0 0.017 3.6E-07 52.5 12.8 84 653-736 46-150 (228)
208 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.47 1E-05 48.0 38.7 143 619-767 397-543 (660)
209 COG4105 ComL DNA uptake lipopr 97.0 0.32 6.9E-06 45.9 21.1 54 212-265 45-101 (254)
210 KOG1538 Uncharacterized conser 96.9 0.26 5.5E-06 52.1 21.1 98 342-473 749-846 (1081)
211 KOG2114 Vacuolar assembly/sort 96.8 0.98 2.1E-05 49.7 25.6 175 134-331 337-516 (933)
212 PF13371 TPR_9: Tetratricopept 96.8 0.0061 1.3E-07 46.2 7.0 58 697-755 3-60 (73)
213 PF03704 BTAD: Bacterial trans 96.8 0.045 9.7E-07 48.5 13.6 72 691-764 64-141 (146)
214 PF13371 TPR_9: Tetratricopept 96.7 0.01 2.2E-07 45.0 8.0 56 348-403 3-58 (73)
215 KOG2114 Vacuolar assembly/sort 96.7 0.59 1.3E-05 51.3 22.8 50 590-643 711-760 (933)
216 PRK15331 chaperone protein Sic 96.6 0.061 1.3E-06 46.9 12.7 85 596-682 49-133 (165)
217 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.98 2.1E-05 45.9 40.8 130 549-682 397-530 (660)
218 PF13424 TPR_12: Tetratricopep 96.6 0.0065 1.4E-07 46.8 6.3 61 691-751 7-73 (78)
219 PF13281 DUF4071: Domain of un 96.6 0.49 1.1E-05 48.1 20.6 32 723-754 304-335 (374)
220 COG0457 NrfG FOG: TPR repeat [ 96.6 0.83 1.8E-05 44.4 29.7 97 167-263 60-158 (291)
221 KOG2280 Vacuolar assembly/sort 96.6 1.5 3.2E-05 47.8 24.6 25 444-468 507-531 (829)
222 PRK15331 chaperone protein Sic 96.5 0.19 4E-06 44.0 15.0 88 628-717 46-133 (165)
223 KOG1585 Protein required for f 96.5 0.31 6.7E-06 45.1 16.6 137 93-258 28-173 (308)
224 KOG1538 Uncharacterized conser 96.5 0.82 1.8E-05 48.5 21.6 81 305-397 747-827 (1081)
225 PRK11906 transcriptional regul 96.5 0.18 3.9E-06 52.0 16.9 144 600-749 274-432 (458)
226 COG1729 Uncharacterized protei 96.4 0.07 1.5E-06 50.7 12.8 96 203-299 144-244 (262)
227 KOG0543 FKBP-type peptidyl-pro 96.4 0.057 1.2E-06 54.0 12.5 95 342-438 259-355 (397)
228 PF13424 TPR_12: Tetratricopep 96.4 0.0096 2.1E-07 45.8 6.0 25 622-646 8-32 (78)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.029 6.3E-07 57.4 10.6 66 651-718 72-141 (453)
230 PF06239 ECSIT: Evolutionarily 96.4 0.12 2.5E-06 47.3 13.1 103 583-704 46-153 (228)
231 PF13512 TPR_18: Tetratricopep 96.3 0.083 1.8E-06 45.0 11.4 58 209-266 18-78 (142)
232 KOG0543 FKBP-type peptidyl-pro 96.3 0.071 1.5E-06 53.4 12.7 95 655-752 258-354 (397)
233 PF13281 DUF4071: Domain of un 96.3 0.94 2E-05 46.1 20.8 110 237-348 143-267 (374)
234 KOG2610 Uncharacterized conser 96.3 0.14 3E-06 49.6 13.6 150 562-715 116-273 (491)
235 KOG1585 Protein required for f 96.2 0.65 1.4E-05 43.1 17.2 142 135-293 95-250 (308)
236 PF03704 BTAD: Bacterial trans 96.2 0.038 8.2E-07 49.0 9.8 57 100-157 66-122 (146)
237 COG3118 Thioredoxin domain-con 96.2 0.55 1.2E-05 45.2 17.3 53 210-262 143-195 (304)
238 COG4649 Uncharacterized protei 96.2 0.38 8.2E-06 41.9 14.5 122 177-298 69-195 (221)
239 PF04840 Vps16_C: Vps16, C-ter 96.1 1.8 3.9E-05 43.8 29.4 106 412-537 180-285 (319)
240 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.063 1.4E-06 55.1 11.3 66 617-683 73-141 (453)
241 PF04840 Vps16_C: Vps16, C-ter 96.1 1.9 4.1E-05 43.6 29.9 79 312-399 184-262 (319)
242 COG4649 Uncharacterized protei 96.1 0.34 7.4E-06 42.2 13.8 123 212-334 69-196 (221)
243 COG1729 Uncharacterized protei 96.0 0.083 1.8E-06 50.2 11.0 97 168-265 144-245 (262)
244 COG0457 NrfG FOG: TPR repeat [ 96.0 1.7 3.6E-05 42.2 32.8 166 515-682 60-230 (291)
245 COG3118 Thioredoxin domain-con 96.0 0.96 2.1E-05 43.6 17.9 145 348-494 142-287 (304)
246 KOG1941 Acetylcholine receptor 96.0 0.45 9.8E-06 46.7 15.9 127 624-750 127-272 (518)
247 COG4105 ComL DNA uptake lipopr 95.9 1.6 3.4E-05 41.4 19.3 31 96-126 71-101 (254)
248 KOG4555 TPR repeat-containing 95.9 0.13 2.8E-06 42.3 9.9 90 175-265 52-145 (175)
249 KOG4555 TPR repeat-containing 95.8 0.31 6.8E-06 40.1 11.9 91 628-719 52-145 (175)
250 PF08631 SPO22: Meiosis protei 95.7 2.5 5.3E-05 42.2 26.4 62 203-264 86-150 (278)
251 PF10345 Cohesin_load: Cohesin 95.7 4.9 0.00011 45.4 40.1 193 20-228 37-252 (608)
252 PF13512 TPR_18: Tetratricopep 95.7 0.45 9.9E-06 40.6 13.1 74 173-246 17-93 (142)
253 PF10300 DUF3808: Protein of u 95.7 0.78 1.7E-05 49.5 18.2 116 180-298 247-375 (468)
254 PF13428 TPR_14: Tetratricopep 95.6 0.04 8.6E-07 36.5 5.3 39 726-765 3-41 (44)
255 COG4785 NlpI Lipoprotein NlpI, 95.6 0.72 1.6E-05 41.9 14.4 66 94-160 97-162 (297)
256 KOG2610 Uncharacterized conser 95.6 0.3 6.5E-06 47.3 12.8 153 281-435 114-273 (491)
257 PRK11906 transcriptional regul 95.6 0.7 1.5E-05 47.8 16.3 136 635-774 274-423 (458)
258 PF10300 DUF3808: Protein of u 95.6 0.71 1.5E-05 49.8 17.4 14 16-29 8-21 (468)
259 KOG1941 Acetylcholine receptor 95.5 0.97 2.1E-05 44.5 15.9 165 203-367 85-273 (518)
260 COG4785 NlpI Lipoprotein NlpI, 95.4 2.1 4.6E-05 39.0 16.4 61 237-298 101-161 (297)
261 PF13428 TPR_14: Tetratricopep 95.3 0.057 1.2E-06 35.7 5.3 40 342-381 3-42 (44)
262 KOG2396 HAT (Half-A-TPR) repea 95.2 4.8 0.0001 41.9 39.6 88 292-381 93-181 (568)
263 smart00299 CLH Clathrin heavy 95.1 1.5 3.2E-05 38.4 15.4 124 624-770 12-136 (140)
264 PF04184 ST7: ST7 protein; In 95.1 1.5 3.2E-05 45.6 16.8 64 619-682 259-323 (539)
265 PF04184 ST7: ST7 protein; In 94.7 2.4 5.3E-05 44.1 17.1 77 340-416 259-338 (539)
266 smart00299 CLH Clathrin heavy 94.6 2.5 5.5E-05 36.9 15.4 42 241-283 13-54 (140)
267 PF13431 TPR_17: Tetratricopep 94.6 0.041 8.8E-07 33.8 2.8 32 363-394 2-33 (34)
268 PF08631 SPO22: Meiosis protei 94.6 5.5 0.00012 39.7 26.4 155 107-263 4-185 (278)
269 COG2976 Uncharacterized protei 94.5 2 4.3E-05 38.7 13.9 115 219-335 70-189 (207)
270 PF04053 Coatomer_WDAD: Coatom 94.5 0.83 1.8E-05 48.4 13.9 26 305-330 347-372 (443)
271 KOG2280 Vacuolar assembly/sort 94.3 10 0.00023 41.7 35.3 101 333-434 425-532 (829)
272 PF09205 DUF1955: Domain of un 94.1 2.1 4.5E-05 35.6 12.2 139 596-756 14-152 (161)
273 PF04053 Coatomer_WDAD: Coatom 94.0 1.2 2.7E-05 47.2 14.1 130 134-295 298-427 (443)
274 COG2976 Uncharacterized protei 93.8 4 8.6E-05 36.9 14.4 115 184-300 70-189 (207)
275 PF12921 ATP13: Mitochondrial 93.8 1.5 3.2E-05 37.1 11.6 101 654-774 2-103 (126)
276 PF12921 ATP13: Mitochondrial 93.8 0.98 2.1E-05 38.2 10.4 47 616-662 49-96 (126)
277 PF13176 TPR_7: Tetratricopept 93.7 0.15 3.2E-06 31.9 4.2 27 726-752 1-27 (36)
278 COG3629 DnrI DNA-binding trans 93.5 0.8 1.7E-05 44.5 10.5 76 691-768 155-236 (280)
279 PF10345 Cohesin_load: Cohesin 93.4 17 0.00037 41.1 44.3 182 114-296 39-251 (608)
280 COG2909 MalT ATP-dependent tra 93.3 18 0.00038 41.0 28.4 23 96-118 347-369 (894)
281 KOG1550 Extracellular protein 93.0 18 0.00039 40.3 26.5 45 425-472 228-277 (552)
282 PF10602 RPN7: 26S proteasome 93.0 1.5 3.2E-05 40.0 11.0 97 97-193 37-140 (177)
283 PF00515 TPR_1: Tetratricopept 92.8 0.29 6.4E-06 29.9 4.5 28 725-752 2-29 (34)
284 KOG1920 IkappaB kinase complex 92.8 25 0.00053 41.3 23.9 103 522-644 947-1051(1265)
285 KOG3941 Intermediate in Toll s 92.7 0.94 2E-05 43.0 9.3 104 617-739 65-173 (406)
286 KOG4234 TPR repeat-containing 92.6 1.6 3.4E-05 39.3 10.1 91 663-756 104-200 (271)
287 KOG1550 Extracellular protein 92.5 21 0.00045 39.8 27.4 50 387-439 262-323 (552)
288 PF13431 TPR_17: Tetratricopep 92.5 0.16 3.4E-06 31.2 2.8 23 651-673 10-32 (34)
289 KOG1920 IkappaB kinase complex 92.4 27 0.00059 40.9 27.5 31 441-472 788-820 (1265)
290 PF02259 FAT: FAT domain; Int 92.2 16 0.00036 38.0 23.1 65 269-333 145-212 (352)
291 COG3629 DnrI DNA-binding trans 92.2 1.4 3E-05 42.9 10.2 78 341-418 154-236 (280)
292 PF06552 TOM20_plant: Plant sp 91.8 2.3 4.9E-05 37.9 10.0 43 705-755 96-138 (186)
293 PF09205 DUF1955: Domain of un 91.8 6.9 0.00015 32.7 14.9 59 415-474 92-150 (161)
294 PF13170 DUF4003: Protein of u 91.5 16 0.00035 36.5 17.9 50 322-371 79-134 (297)
295 PF07719 TPR_2: Tetratricopept 91.4 0.48 1E-05 28.9 4.3 28 725-752 2-29 (34)
296 PF13176 TPR_7: Tetratricopept 91.4 0.46 1E-05 29.6 4.2 23 622-644 2-24 (36)
297 PF10602 RPN7: 26S proteasome 91.1 2.3 5E-05 38.7 10.1 62 621-682 38-101 (177)
298 PF09613 HrpB1_HrpK: Bacterial 90.2 12 0.00027 32.9 13.9 17 245-261 54-70 (160)
299 PF13170 DUF4003: Protein of u 90.2 22 0.00047 35.7 19.5 127 288-416 80-224 (297)
300 PF00515 TPR_1: Tetratricopept 90.1 0.64 1.4E-05 28.4 4.0 28 98-125 3-30 (34)
301 KOG4648 Uncharacterized conser 90.1 1.4 3E-05 43.1 7.8 49 280-330 107-156 (536)
302 KOG2396 HAT (Half-A-TPR) repea 89.5 31 0.00067 36.4 41.8 76 199-275 103-179 (568)
303 KOG1586 Protein required for f 89.4 18 0.0004 33.8 22.0 19 281-299 165-183 (288)
304 KOG4648 Uncharacterized conser 89.4 1.4 3.1E-05 43.0 7.3 89 138-229 104-193 (536)
305 KOG3941 Intermediate in Toll s 89.4 2.9 6.3E-05 39.9 9.1 34 461-494 140-173 (406)
306 KOG4234 TPR repeat-containing 89.1 4.6 0.0001 36.4 9.7 56 348-403 142-197 (271)
307 PF09613 HrpB1_HrpK: Bacterial 89.1 15 0.00033 32.3 13.6 53 351-403 21-73 (160)
308 PF02259 FAT: FAT domain; Int 88.7 33 0.00071 35.7 21.6 65 653-717 145-212 (352)
309 PF07719 TPR_2: Tetratricopept 88.6 0.94 2E-05 27.5 4.0 27 98-124 3-29 (34)
310 KOG2471 TPR repeat-containing 88.2 24 0.00053 36.8 15.1 107 629-737 250-382 (696)
311 COG0790 FOG: TPR repeat, SEL1 87.6 34 0.00073 34.5 23.5 123 634-763 128-276 (292)
312 PF06552 TOM20_plant: Plant sp 87.1 6.4 0.00014 35.2 9.3 75 636-719 52-137 (186)
313 PF13374 TPR_10: Tetratricopep 87.1 1.6 3.4E-05 28.1 4.6 28 725-752 3-30 (42)
314 PF04097 Nic96: Nup93/Nic96; 86.7 62 0.0013 36.6 22.5 62 237-299 113-181 (613)
315 KOG2471 TPR repeat-containing 85.8 32 0.0007 36.0 14.6 106 348-455 248-380 (696)
316 PF04097 Nic96: Nup93/Nic96; 85.8 69 0.0015 36.3 24.4 23 733-758 514-536 (613)
317 KOG0276 Vesicle coat complex C 85.2 8.8 0.00019 41.0 10.6 150 282-470 598-747 (794)
318 KOG0276 Vesicle coat complex C 85.1 13 0.00028 39.8 11.8 29 200-228 665-693 (794)
319 KOG1464 COP9 signalosome, subu 85.0 37 0.00079 32.5 21.0 127 17-159 40-173 (440)
320 PRK09687 putative lyase; Provi 84.9 44 0.00095 33.3 28.8 233 512-769 35-277 (280)
321 PF07035 Mic1: Colon cancer-as 84.7 29 0.00063 31.1 15.3 100 292-400 16-115 (167)
322 KOG0403 Neoplastic transformat 84.7 53 0.0011 34.0 28.4 72 659-735 514-585 (645)
323 PRK11619 lytic murein transgly 84.5 79 0.0017 35.9 39.6 250 422-690 254-512 (644)
324 KOG1586 Protein required for f 84.5 36 0.00078 32.0 22.8 12 216-227 29-40 (288)
325 PF13181 TPR_8: Tetratricopept 84.5 2.8 6.1E-05 25.4 4.5 28 725-752 2-29 (34)
326 PRK09687 putative lyase; Provi 84.4 46 0.001 33.1 27.3 58 339-402 205-262 (280)
327 PF13174 TPR_6: Tetratricopept 84.1 1.8 3.8E-05 26.0 3.4 28 727-754 3-30 (33)
328 PF00637 Clathrin: Region in C 84.0 0.044 9.6E-07 48.3 -5.5 53 277-329 14-66 (143)
329 KOG2066 Vacuolar assembly/sort 83.6 82 0.0018 35.4 28.2 103 347-456 363-467 (846)
330 PF13374 TPR_10: Tetratricopep 83.6 2.7 5.9E-05 26.9 4.4 26 133-158 4-29 (42)
331 COG1747 Uncharacterized N-term 83.5 65 0.0014 34.2 25.7 164 548-718 65-234 (711)
332 KOG2066 Vacuolar assembly/sort 83.3 84 0.0018 35.3 27.4 72 211-286 366-439 (846)
333 PF11207 DUF2989: Protein of u 83.3 10 0.00023 34.7 9.1 21 653-673 177-197 (203)
334 COG3947 Response regulator con 83.2 47 0.001 32.4 15.5 59 273-332 282-340 (361)
335 TIGR02561 HrpB1_HrpK type III 82.6 31 0.00068 29.9 12.3 52 352-403 22-73 (153)
336 COG4455 ImpE Protein of avirul 82.4 9.8 0.00021 35.1 8.4 75 343-417 4-80 (273)
337 KOG4642 Chaperone-dependent E3 82.4 24 0.00053 33.2 11.0 118 594-715 20-143 (284)
338 KOG4570 Uncharacterized conser 81.7 24 0.00053 34.6 11.2 100 269-370 63-165 (418)
339 KOG0991 Replication factor C, 81.7 47 0.001 31.2 13.2 18 629-646 202-219 (333)
340 COG3947 Response regulator con 81.6 55 0.0012 32.0 17.4 55 661-716 286-340 (361)
341 PF08424 NRDE-2: NRDE-2, neces 81.1 68 0.0015 32.8 20.2 79 601-681 48-129 (321)
342 PF11207 DUF2989: Protein of u 81.1 15 0.00032 33.8 9.2 72 636-708 123-197 (203)
343 COG1747 Uncharacterized N-term 81.0 81 0.0017 33.5 25.6 180 200-386 65-251 (711)
344 KOG4570 Uncharacterized conser 80.7 19 0.00042 35.2 10.2 47 216-262 115-162 (418)
345 PF13174 TPR_6: Tetratricopept 80.4 2.6 5.6E-05 25.2 3.2 24 101-124 5-28 (33)
346 PF04190 DUF410: Protein of un 80.4 62 0.0013 31.8 16.1 28 128-155 87-114 (260)
347 PF13181 TPR_8: Tetratricopept 79.7 4.3 9.3E-05 24.6 4.0 27 98-124 3-29 (34)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 79.2 15 0.00032 28.9 7.3 61 600-661 23-83 (103)
349 TIGR02561 HrpB1_HrpK type III 78.4 44 0.00096 29.0 12.9 50 214-263 23-72 (153)
350 PF08424 NRDE-2: NRDE-2, neces 78.4 84 0.0018 32.1 17.8 80 566-647 48-130 (321)
351 COG2909 MalT ATP-dependent tra 77.3 1.4E+02 0.0031 34.3 31.0 224 453-679 424-684 (894)
352 PF10579 Rapsyn_N: Rapsyn N-te 77.3 6.8 0.00015 29.4 4.8 46 701-746 18-65 (80)
353 PF07721 TPR_4: Tetratricopept 77.1 3.4 7.3E-05 23.4 2.7 21 99-119 4-24 (26)
354 TIGR03504 FimV_Cterm FimV C-te 77.0 5.6 0.00012 26.1 3.9 23 695-717 5-27 (44)
355 KOG4507 Uncharacterized conser 76.8 9.4 0.0002 40.6 7.5 105 315-420 617-721 (886)
356 PF07035 Mic1: Colon cancer-as 76.1 58 0.0013 29.2 15.2 56 273-332 92-147 (167)
357 TIGR03504 FimV_Cterm FimV C-te 75.4 8.1 0.00018 25.4 4.4 25 240-264 4-28 (44)
358 KOG4642 Chaperone-dependent E3 75.1 68 0.0015 30.4 11.6 118 558-679 19-142 (284)
359 PF07721 TPR_4: Tetratricopept 74.9 4.4 9.5E-05 22.9 2.8 22 727-748 4-25 (26)
360 cd00923 Cyt_c_Oxidase_Va Cytoc 74.1 26 0.00057 27.6 7.4 45 323-367 25-69 (103)
361 COG4455 ImpE Protein of avirul 73.8 26 0.00056 32.5 8.5 57 207-263 7-63 (273)
362 KOG1464 COP9 signalosome, subu 73.7 87 0.0019 30.1 18.8 92 589-680 150-257 (440)
363 KOG3364 Membrane protein invol 73.4 44 0.00096 28.4 9.1 62 237-298 34-99 (149)
364 smart00028 TPR Tetratricopepti 73.1 6.3 0.00014 22.7 3.6 27 726-752 3-29 (34)
365 KOG0403 Neoplastic transformat 73.0 1.2E+02 0.0027 31.5 26.8 74 693-771 513-586 (645)
366 COG5187 RPN7 26S proteasome re 72.9 97 0.0021 30.2 12.8 69 373-441 114-187 (412)
367 KOG2062 26S proteasome regulat 71.7 1.8E+02 0.0038 32.7 38.6 253 454-717 367-634 (929)
368 KOG0991 Replication factor C, 71.7 92 0.002 29.4 12.9 85 590-682 136-220 (333)
369 PF00637 Clathrin: Region in C 71.5 1.3 2.8E-05 38.9 -0.0 52 662-713 15-66 (143)
370 PF09986 DUF2225: Uncharacteri 70.8 80 0.0017 29.9 11.7 28 727-754 168-195 (214)
371 TIGR02508 type_III_yscG type I 70.5 50 0.0011 26.3 8.2 51 279-335 48-98 (115)
372 PF14561 TPR_20: Tetratricopep 70.0 49 0.0011 26.0 8.5 42 362-403 10-51 (90)
373 KOG0890 Protein kinase of the 69.9 3.5E+02 0.0076 35.4 37.0 152 171-329 1388-1542(2382)
374 PF02284 COX5A: Cytochrome c o 69.4 31 0.00067 27.6 7.0 43 325-367 30-72 (108)
375 KOG1308 Hsp70-interacting prot 68.9 3.4 7.3E-05 40.8 2.2 93 667-762 127-220 (377)
376 COG0790 FOG: TPR repeat, SEL1 68.7 1.3E+02 0.0029 30.1 25.6 116 599-721 128-269 (292)
377 COG5159 RPN6 26S proteasome re 67.4 1.3E+02 0.0028 29.4 20.1 22 484-505 130-151 (421)
378 KOG4507 Uncharacterized conser 67.2 20 0.00043 38.3 7.3 167 286-455 551-721 (886)
379 PRK15180 Vi polysaccharide bio 67.0 1.7E+02 0.0038 30.8 32.1 84 667-753 711-805 (831)
380 smart00028 TPR Tetratricopepti 66.3 10 0.00022 21.8 3.4 25 99-123 4-28 (34)
381 PF09986 DUF2225: Uncharacteri 66.0 1E+02 0.0022 29.2 11.4 25 694-718 170-194 (214)
382 PF07163 Pex26: Pex26 protein; 65.7 77 0.0017 30.9 10.1 85 626-712 90-181 (309)
383 KOG3364 Membrane protein invol 65.3 87 0.0019 26.7 10.6 68 686-754 29-101 (149)
384 COG5159 RPN6 26S proteasome re 65.1 1.4E+02 0.0031 29.1 22.1 95 378-472 129-234 (421)
385 PF10579 Rapsyn_N: Rapsyn N-te 64.3 17 0.00036 27.4 4.5 44 213-256 18-64 (80)
386 PF04910 Tcf25: Transcriptiona 63.9 1.9E+02 0.0041 30.1 23.1 147 57-229 10-167 (360)
387 TIGR02508 type_III_yscG type I 63.4 76 0.0016 25.4 8.5 52 697-754 47-98 (115)
388 PF14853 Fis1_TPR_C: Fis1 C-te 62.7 29 0.00063 24.0 5.2 23 730-752 7-29 (53)
389 KOG2062 26S proteasome regulat 61.9 2.8E+02 0.006 31.4 41.0 119 558-682 510-634 (929)
390 PF14561 TPR_20: Tetratricopep 61.7 71 0.0015 25.1 8.0 27 237-263 24-50 (90)
391 PRK11619 lytic murein transgly 59.8 3.1E+02 0.0068 31.3 42.1 98 522-622 415-514 (644)
392 KOG2063 Vacuolar assembly/sort 59.2 3.6E+02 0.0077 31.8 21.0 115 168-282 506-638 (877)
393 PF02284 COX5A: Cytochrome c o 58.6 95 0.0021 25.0 10.2 60 693-752 12-73 (108)
394 KOG1308 Hsp70-interacting prot 56.7 7.7 0.00017 38.4 2.2 86 597-684 127-212 (377)
395 COG4941 Predicted RNA polymera 56.3 2.1E+02 0.0046 28.8 11.5 117 635-754 272-395 (415)
396 smart00386 HAT HAT (Half-A-TPR 55.9 29 0.00064 20.2 4.1 27 355-381 2-28 (33)
397 KOG0376 Serine-threonine phosp 55.9 27 0.00058 36.7 5.9 52 352-403 16-67 (476)
398 KOG2034 Vacuolar sorting prote 55.8 3.8E+02 0.0083 31.1 26.8 49 209-263 366-417 (911)
399 PF12862 Apc5: Anaphase-promot 55.2 46 0.001 26.4 6.2 53 700-752 9-69 (94)
400 PRK15180 Vi polysaccharide bio 54.9 2.8E+02 0.0062 29.3 30.8 19 701-719 788-806 (831)
401 PF14853 Fis1_TPR_C: Fis1 C-te 54.7 44 0.00095 23.1 5.0 21 278-298 9-29 (53)
402 PF07575 Nucleopor_Nup85: Nup8 54.1 3.6E+02 0.0079 30.3 19.3 33 735-767 506-538 (566)
403 smart00777 Mad3_BUB1_I Mad3/BU 53.6 1.1E+02 0.0023 26.0 8.1 43 706-748 80-123 (125)
404 KOG0376 Serine-threonine phosp 53.5 27 0.00058 36.6 5.5 55 209-263 46-100 (476)
405 PF07163 Pex26: Pex26 protein; 52.9 1.4E+02 0.0031 29.2 9.6 57 237-293 120-181 (309)
406 PRK10941 hypothetical protein; 51.8 1.8E+02 0.004 28.7 10.7 58 346-403 187-244 (269)
407 PF12862 Apc5: Anaphase-promot 51.7 85 0.0018 24.9 7.2 53 630-682 9-69 (94)
408 PRK10941 hypothetical protein; 51.1 1.8E+02 0.0038 28.8 10.5 58 275-333 186-243 (269)
409 PF09670 Cas_Cas02710: CRISPR- 50.0 2E+02 0.0043 30.3 11.4 55 593-648 140-198 (379)
410 PF09670 Cas_Cas02710: CRISPR- 49.9 2.6E+02 0.0057 29.3 12.3 56 557-613 139-198 (379)
411 KOG4521 Nuclear pore complex, 49.5 4.8E+02 0.01 31.4 14.5 82 204-287 986-1071(1480)
412 PF04190 DUF410: Protein of un 49.3 2.7E+02 0.0058 27.4 19.0 27 303-329 88-114 (260)
413 PF00244 14-3-3: 14-3-3 protei 49.2 2.2E+02 0.0048 27.5 10.8 38 486-523 8-45 (236)
414 COG0735 Fur Fe2+/Zn2+ uptake r 48.9 88 0.0019 27.4 7.3 58 227-284 12-69 (145)
415 PF14689 SPOB_a: Sensor_kinase 48.6 40 0.00088 24.2 4.3 25 727-751 26-50 (62)
416 KOG0687 26S proteasome regulat 48.5 3E+02 0.0065 27.7 14.1 15 318-332 194-208 (393)
417 PHA02875 ankyrin repeat protei 48.4 3.7E+02 0.0079 28.7 15.9 13 501-513 217-229 (413)
418 PHA02875 ankyrin repeat protei 47.7 3.8E+02 0.0081 28.6 15.9 43 397-443 184-229 (413)
419 PF13929 mRNA_stabil: mRNA sta 47.1 3E+02 0.0065 27.3 17.5 64 127-190 198-262 (292)
420 PF11846 DUF3366: Domain of un 45.9 62 0.0014 30.0 6.4 56 16-72 120-175 (193)
421 PF00244 14-3-3: 14-3-3 protei 45.6 2E+02 0.0043 27.8 9.8 57 240-296 6-63 (236)
422 KOG3807 Predicted membrane pro 45.6 1.3E+02 0.0029 29.8 8.4 118 147-275 232-351 (556)
423 PRK10564 maltose regulon perip 45.5 56 0.0012 32.3 6.0 37 727-763 260-296 (303)
424 PF07575 Nucleopor_Nup85: Nup8 45.4 4.9E+02 0.011 29.3 18.5 25 236-260 149-173 (566)
425 KOG1839 Uncharacterized protei 44.4 3E+02 0.0066 33.4 12.4 154 595-748 943-1123(1236)
426 PRK12798 chemotaxis protein; R 44.1 4.1E+02 0.0088 28.0 23.4 155 144-299 125-286 (421)
427 COG5187 RPN7 26S proteasome re 43.5 3.3E+02 0.0072 26.8 13.3 66 237-302 117-187 (412)
428 PRK12798 chemotaxis protein; R 43.4 4.2E+02 0.009 27.9 23.9 190 177-370 123-325 (421)
429 KOG0890 Protein kinase of the 43.4 9.3E+02 0.02 31.9 40.7 152 136-294 1388-1542(2382)
430 PF14689 SPOB_a: Sensor_kinase 43.3 66 0.0014 23.1 4.7 19 696-714 30-48 (62)
431 PF11846 DUF3366: Domain of un 42.9 68 0.0015 29.8 6.2 42 710-753 132-173 (193)
432 KOG4521 Nuclear pore complex, 42.5 5.9E+02 0.013 30.7 13.9 119 342-466 985-1124(1480)
433 COG4259 Uncharacterized protei 42.4 1.6E+02 0.0035 23.4 6.8 60 705-766 53-112 (121)
434 PF11817 Foie-gras_1: Foie gra 41.9 1.2E+02 0.0026 29.6 7.9 59 693-751 182-245 (247)
435 PRK13800 putative oxidoreducta 41.8 7E+02 0.015 30.1 29.4 123 237-369 758-881 (897)
436 PF10255 Paf67: RNA polymerase 40.3 2E+02 0.0044 30.2 9.4 60 657-716 125-191 (404)
437 TIGR02710 CRISPR-associated pr 40.3 3.9E+02 0.0085 27.9 11.3 54 138-191 137-196 (380)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 40.0 2.3E+02 0.0051 24.0 8.8 43 114-156 81-124 (126)
439 PF11663 Toxin_YhaV: Toxin wit 39.4 28 0.00061 29.4 2.6 30 666-697 107-136 (140)
440 PF11663 Toxin_YhaV: Toxin wit 38.9 37 0.00081 28.7 3.2 21 249-269 109-129 (140)
441 PF13929 mRNA_stabil: mRNA sta 38.5 4.1E+02 0.0089 26.4 15.7 56 237-292 204-260 (292)
442 KOG0551 Hsp90 co-chaperone CNS 38.4 2.2E+02 0.0048 28.6 8.7 90 591-681 88-180 (390)
443 PF07720 TPR_3: Tetratricopept 37.8 83 0.0018 19.6 3.9 23 726-748 3-25 (36)
444 KOG4077 Cytochrome c oxidase, 37.8 2.1E+02 0.0046 24.1 7.1 41 678-718 73-113 (149)
445 KOG4077 Cytochrome c oxidase, 37.5 2.3E+02 0.0049 23.9 7.2 46 603-648 68-113 (149)
446 KOG2063 Vacuolar assembly/sort 37.0 7.7E+02 0.017 29.2 27.0 26 377-402 507-532 (877)
447 KOG2034 Vacuolar sorting prote 34.9 8E+02 0.017 28.7 26.9 85 241-340 364-450 (911)
448 KOG0545 Aryl-hydrocarbon recep 34.9 4.2E+02 0.0092 25.5 12.1 58 207-264 236-293 (329)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 34.3 2.9E+02 0.0063 23.4 8.6 41 358-398 81-123 (126)
450 PF02184 HAT: HAT (Half-A-TPR) 33.9 90 0.0019 18.9 3.3 22 705-728 3-24 (32)
451 KOG4814 Uncharacterized conser 33.7 3.2E+02 0.0069 30.3 9.6 96 201-298 355-456 (872)
452 PF04910 Tcf25: Transcriptiona 33.6 5.7E+02 0.012 26.7 20.6 57 312-368 110-167 (360)
453 KOG1839 Uncharacterized protei 33.5 6.3E+02 0.014 31.0 12.8 127 242-368 939-1085(1236)
454 PRK13342 recombination factor 33.4 6.2E+02 0.014 27.0 19.1 170 285-472 152-333 (413)
455 COG4941 Predicted RNA polymera 33.2 5.3E+02 0.012 26.2 11.4 125 165-299 263-394 (415)
456 cd02680 MIT_calpain7_2 MIT: do 32.8 91 0.002 23.5 4.1 32 705-752 3-34 (75)
457 KOG0551 Hsp90 co-chaperone CNS 32.7 2.5E+02 0.0055 28.3 8.1 95 169-263 84-181 (390)
458 cd07229 Pat_TGL3_like Triacylg 32.2 54 0.0012 34.2 3.9 99 676-779 101-206 (391)
459 PF11848 DUF3368: Domain of un 31.9 1.6E+02 0.0035 19.8 5.1 31 178-208 14-44 (48)
460 cd00280 TRFH Telomeric Repeat 31.8 3.2E+02 0.0069 25.0 7.8 20 314-333 120-139 (200)
461 PF11817 Foie-gras_1: Foie gra 31.7 2.2E+02 0.0047 27.8 7.9 54 624-677 183-241 (247)
462 KOG0686 COP9 signalosome, subu 31.5 6.3E+02 0.014 26.5 14.8 24 237-260 152-175 (466)
463 KOG2659 LisH motif-containing 31.4 4.3E+02 0.0093 25.1 9.0 64 616-681 23-91 (228)
464 COG2812 DnaX DNA polymerase II 31.1 7.4E+02 0.016 27.3 12.1 104 16-131 176-280 (515)
465 cd08819 CARD_MDA5_2 Caspase ac 30.9 2.6E+02 0.0056 21.8 6.9 14 423-436 50-63 (88)
466 smart00777 Mad3_BUB1_I Mad3/BU 30.7 3.4E+02 0.0073 23.1 9.6 42 672-713 81-123 (125)
467 KOG2422 Uncharacterized conser 30.4 7.8E+02 0.017 27.2 18.0 171 489-664 248-460 (665)
468 KOG0128 RNA-binding protein SA 30.4 9.1E+02 0.02 28.0 39.2 61 237-298 115-178 (881)
469 COG4976 Predicted methyltransf 30.4 1.1E+02 0.0024 28.8 5.0 53 211-265 5-59 (287)
470 PRK09857 putative transposase; 30.1 4.5E+02 0.0097 26.4 9.9 65 693-758 210-274 (292)
471 PRK10564 maltose regulon perip 30.1 98 0.0021 30.7 5.0 31 273-303 260-290 (303)
472 PF09477 Type_III_YscG: Bacter 30.0 3.1E+02 0.0067 22.4 8.8 79 111-196 21-99 (116)
473 cd08819 CARD_MDA5_2 Caspase ac 29.7 2.7E+02 0.0059 21.7 7.0 36 386-426 48-83 (88)
474 PRK11639 zinc uptake transcrip 28.9 2.7E+02 0.0059 25.2 7.4 54 231-284 21-74 (169)
475 cd00280 TRFH Telomeric Repeat 28.8 4E+02 0.0086 24.4 7.9 22 451-472 118-139 (200)
476 PRK14956 DNA polymerase III su 28.8 7.9E+02 0.017 26.8 12.8 102 18-130 180-282 (484)
477 KOG0687 26S proteasome regulat 27.9 6.5E+02 0.014 25.5 16.6 67 374-440 104-175 (393)
478 KOG0292 Vesicle coat complex C 26.8 1E+03 0.022 27.9 12.2 42 271-312 1085-1126(1202)
479 KOG0686 COP9 signalosome, subu 26.8 7.6E+02 0.016 25.9 15.6 61 202-263 151-215 (466)
480 COG2178 Predicted RNA-binding 26.5 5.2E+02 0.011 23.9 10.0 21 381-401 36-56 (204)
481 PF06957 COPI_C: Coatomer (COP 25.8 3.6E+02 0.0077 28.6 8.4 19 103-121 125-143 (422)
482 PF10516 SHNi-TPR: SHNi-TPR; 25.7 1.8E+02 0.004 18.4 4.0 27 726-752 3-29 (38)
483 PF13762 MNE1: Mitochondrial s 25.2 4.7E+02 0.01 22.9 10.8 91 123-213 29-127 (145)
484 PRK14956 DNA polymerase III su 25.2 9.2E+02 0.02 26.3 12.6 35 688-722 247-281 (484)
485 PRK09462 fur ferric uptake reg 24.8 3.6E+02 0.0077 23.7 7.4 54 231-284 12-66 (148)
486 KOG0545 Aryl-hydrocarbon recep 24.3 6.5E+02 0.014 24.3 14.7 50 353-402 243-292 (329)
487 KOG0292 Vesicle coat complex C 24.3 1.2E+03 0.026 27.4 24.2 60 705-764 1063-1124(1202)
488 PRK09857 putative transposase; 24.3 6.4E+02 0.014 25.3 9.8 56 631-687 218-273 (292)
489 COG0735 Fur Fe2+/Zn2+ uptake r 24.2 3.3E+02 0.0073 23.8 6.9 27 380-406 26-52 (145)
490 PF12968 DUF3856: Domain of Un 24.0 4.3E+02 0.0094 22.2 11.0 51 631-681 21-82 (144)
491 KOG2214 Predicted esterase of 23.9 2.2E+02 0.0047 30.5 6.4 94 676-775 192-291 (543)
492 PF13934 ELYS: Nuclear pore co 23.8 6.5E+02 0.014 24.1 14.8 167 113-292 27-198 (226)
493 PF09454 Vps23_core: Vps23 cor 23.7 1.4E+02 0.0031 21.7 3.7 27 344-370 12-38 (65)
494 PF10366 Vps39_1: Vacuolar sor 23.7 1.3E+02 0.0029 24.7 4.0 26 727-752 42-67 (108)
495 PRK13800 putative oxidoreducta 23.6 1.4E+03 0.029 27.7 31.0 247 129-403 633-881 (897)
496 PF10255 Paf67: RNA polymerase 23.5 9E+02 0.02 25.6 15.5 60 587-646 125-191 (404)
497 PF10366 Vps39_1: Vacuolar sor 23.3 2E+02 0.0044 23.6 5.1 27 376-402 41-67 (108)
498 PRK08691 DNA polymerase III su 23.1 1.1E+03 0.023 27.3 11.9 98 72-172 176-286 (709)
499 KOG2659 LisH motif-containing 22.8 6.7E+02 0.015 23.9 9.1 66 267-332 23-91 (228)
500 COG4976 Predicted methyltransf 22.3 1.9E+02 0.0042 27.3 5.1 53 351-403 6-58 (287)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-85 Score=761.11 Aligned_cols=719 Identities=20% Similarity=0.259 Sum_probs=670.6
Q ss_pred CCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043440 37 LKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAV 116 (850)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (850)
.++..+++.++..+++.|+ +++|..+++.+... |.+++..+|..+++.|.+.+.++.|.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~-~~~A~~l~~~m~~~--------------------g~~~~~~~~~~ll~~~~~~~~~~~a~ 106 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQ-LEQALKLLESMQEL--------------------RVPVDEDAYVALFRLCEWKRAVEEGS 106 (857)
T ss_pred ccchhhHHHHHHHHHhCCC-HHHHHHHHHHHHhc--------------------CCCCChhHHHHHHHHHhhCCCHHHHH
Confidence 4678889999999999996 99999998887653 45678888999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043440 117 DCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALG 196 (850)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (850)
.++..+.+.++.++..++|+++..|.+.|+++.|+.+|++|.+ ||..+|+.++.+|++.|++++|..+|++|...|
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999974 599999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHH
Q 043440 197 VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATS 275 (850)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 275 (850)
+.||..+|+.++.+|+..+++..+.+++..+.+.|..|+. +++.|+.+|++.|++++|.++|++|.. ||..+||+
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~ 258 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNA 258 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999964 78999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 043440 276 LMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQL 355 (850)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (850)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 356 LEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEM 435 (850)
Q Consensus 356 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (850)
+++|.++|++|.. +|..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+
T Consensus 339 ~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 339 WGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred HHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999865 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 043440 436 LEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCL 515 (850)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 515 (850)
.+.|+.|+..+++.|+++|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||..
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 9999999999999999999999999999999999974 6788999999999999999999999999986 5899999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 043440 516 TYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFC 595 (850)
Q Consensus 516 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 595 (850)
||+.++.+|++.|+.+.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+|+++|.+|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYV 565 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 479999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 596 RRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMI-NDGIPCDLQTYTTLIAGLLEEGKLLTAS 674 (850)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 674 (850)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5699999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 675 NLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 675 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
+++++|. ++||..+|++|+.+|..+|+.+.|....+++.+. .| +...|..|.+.|...|+|++|.++.+.|.+.
T Consensus 646 ~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 646 NFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999984 7899999999999999999999999999999884 45 6777888999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhcCCchHHhhccchhhhhhhhhhHHhhcCCchhhh
Q 043440 754 GLVPDDTTYDILVNGKSRSDTWARKKEKMPACRKHHSMRIELLELPRMSNY 804 (850)
Q Consensus 754 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~y 804 (850)
|+++++.+.+.-+++-.+ .|-.+++.+|...+++.+..+........+|
T Consensus 721 g~~k~~g~s~ie~~~~~~--~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~ 769 (857)
T PLN03077 721 GLTVDPGCSWVEVKGKVH--AFLTDDESHPQIKEINTVLEGFYEKMKASGL 769 (857)
T ss_pred CCCCCCCccEEEECCEEE--EEecCCCCCcchHHHHHHHHHHHHHHHhCCc
Confidence 999998877665554333 2333344456666666655544444333333
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-83 Score=740.88 Aligned_cols=690 Identities=17% Similarity=0.270 Sum_probs=652.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVM 172 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (850)
+++...++.++..|.+.|++++|..+|+.|.+.|+.|+..+|..++..+.+.+.++.|..++..+...+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCH
Q 043440 173 MRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNL 251 (850)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 251 (850)
+..|++.|+++.|..+|+.|.+ ||..+|+.++.+|++.|++++|..+|++|...|+.|+. +|+.++.+|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 9999999999999999999974 68999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 252 TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQM 331 (850)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (850)
+.+.+++..+.+.|..||+.++|.++.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|+++|.+|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 6789999999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043440 332 KHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI-ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV 410 (850)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 410 (850)
.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|. +|..+||.|+.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999996 46999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 043440 411 SYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLC 490 (850)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 490 (850)
+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+++.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043440 491 KAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALK 570 (850)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 570 (850)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +++||..||+.++.+|++.|.++.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999964 5889999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 571 MRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGI 650 (850)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (850)
++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .||..+||++|.+|++.|+.++|+++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043440 651 PCDLQTYTTLIAGLLEEGKLLTASNLYSEML-SKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNT 729 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 729 (850)
.||..||+.++.+|++.|.+++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|++
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 68999999999999999999999999999999984 6799999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCchHHhhc-----------cchhhh------hhhhhh
Q 043440 730 LIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWARKKE-----------KMPACR------KHHSMR 792 (850)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~~------~~~~~~ 792 (850)
|+.+|..+|+.+.+....+++.+..+. +...|..|.+.|...|+|+++.+ +.++|. +.+.+.
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 999999999999999999999986543 67778889999999999999876 233332 223333
Q ss_pred HHhhcCCchhhhHHHH
Q 043440 793 IELLELPRMSNYRKVL 808 (850)
Q Consensus 793 ~~~~~~p~~~~y~~~l 808 (850)
.+...+|....++.+|
T Consensus 742 ~~d~~h~~~~~i~~~l 757 (857)
T PLN03077 742 TDDESHPQIKEINTVL 757 (857)
T ss_pred cCCCCCcchHHHHHHH
Confidence 4455677777776554
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.6e-69 Score=605.99 Aligned_cols=545 Identities=21% Similarity=0.331 Sum_probs=448.0
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHH
Q 043440 198 KLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPS-R-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATS 275 (850)
Q Consensus 198 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 275 (850)
.++...|..++..+++.|++++|.++|++|.+.++.+. . ++..++..|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45666777888888888888888888888888776543 3 667778888888888888888877754 78888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 043440 276 LMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQL 355 (850)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (850)
++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043440 356 LEEAYKLFDEAVDSGI-ANVFTYNDLLAWLCKRGKVSEACNLWQKMVS--SGVRPSVVSYNNMILAHCTVKNMDEAYSVF 432 (850)
Q Consensus 356 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 432 (850)
+++|.++|+.|.+.+. ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888777 8888888888888888888888888888875 567888888888888888888888888888
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 043440 433 SEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIP 512 (850)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 512 (850)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 043440 513 KCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLIN 592 (850)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 592 (850)
|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043440 593 GFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLT 672 (850)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 672 (850)
+|++.|++++|.++|.+|.+.|+.||..+|++++..|. +++++|.++.+.+...+. .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHH
Confidence 88888888888888888888888888888888876543 245666555544443210 001111233467
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 673 ASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 673 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
|..+|++|++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|+.++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999999989999999999999998888889999999999998433 4789999999999
Q ss_pred CCCCCCHH
Q 043440 753 KGLVPDDT 760 (850)
Q Consensus 753 ~g~~p~~~ 760 (850)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99999975
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-68 Score=598.37 Aligned_cols=543 Identities=19% Similarity=0.333 Sum_probs=337.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 043440 130 LLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGL-GVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVI 208 (850)
Q Consensus 130 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 208 (850)
+...|..++..+++.|++++|+.+|++|...|+ .++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 444555666666666666666666666666654 34555566666666666666666666666653 5666666666
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 043440 209 QALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLS 287 (850)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 287 (850)
.+|++.|+++.|.++|++|.+.|+.|+. +|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 6666666666666666666666666666 666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 288 SALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH--MGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDE 365 (850)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (850)
+|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666654 45566666666666666666666666666666
Q ss_pred HHHCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 043440 366 AVDSGI-ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNV 444 (850)
Q Consensus 366 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 444 (850)
|.+.+. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 666665 6666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043440 445 VTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGF 524 (850)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 524 (850)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHH
Q 043440 525 VKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESAC 604 (850)
Q Consensus 525 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 604 (850)
++.|++++|.++|.+|.+.|+.||..+|+.++..|. +.++++..+.+.+..-+. .......+..++|.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al 832 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSWAL 832 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHHHH
Confidence 666666666666666666666666666666654432 134444433332221100 00011112234466
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 605 KLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKG 684 (850)
Q Consensus 605 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 684 (850)
.+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..++++|...|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 666666666666666666666655555555555555555555555555566666666655321 245666666666666
Q ss_pred CCCCHH
Q 043440 685 IEPDII 690 (850)
Q Consensus 685 ~~~~~~ 690 (850)
+.|+..
T Consensus 911 i~p~~~ 916 (1060)
T PLN03218 911 VVPSVS 916 (1060)
T ss_pred CCCCcc
Confidence 655543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-62 Score=556.79 Aligned_cols=478 Identities=21% Similarity=0.294 Sum_probs=456.0
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 043440 267 PMNLVVATSLMKGYYKQGDLSSALELLDKIKEDG-LSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNS 345 (850)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 345 (850)
..+...|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466789999999999999999999999998764 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNM 425 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 425 (850)
++.+|++.|++++|.++|++|.+ +|..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+++..|..
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999975 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 043440 426 DEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKM 505 (850)
Q Consensus 426 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (850)
+.+.+++..+.+.|+.||..+++.++++|++.|++++|.++|++|. ++|..+||.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 468899999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHh
Q 043440 506 VEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDAT 585 (850)
Q Consensus 506 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 585 (850)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.++++|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 6999
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 043440 586 AYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIN-DGIPCDLQTYTTLIAGL 664 (850)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~ 664 (850)
+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 043440 665 LEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEA 743 (850)
Q Consensus 665 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 743 (850)
++.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+. .| +..+|..|+++|++.|++++|
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999999876 57899999999999999999999999999999874 45 577899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHH
Q 043440 744 FRLHNEMLDKGLVPDDT 760 (850)
Q Consensus 744 ~~~~~~~~~~g~~p~~~ 760 (850)
.+++++|.+.|+++.+.
T Consensus 548 ~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 548 AKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHHHHHHHcCCccCCC
Confidence 99999999999875544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-61 Score=542.53 Aligned_cols=474 Identities=20% Similarity=0.301 Sum_probs=421.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHH
Q 043440 163 GVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALG-VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTN 240 (850)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 240 (850)
.++..+|+.++.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|..|+. +++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466788888999999999999999999888754 6788999999999999999999999999999999988888 9999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043440 241 LIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGK 320 (850)
Q Consensus 241 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (850)
|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999864 79999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 321 VEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKM 400 (850)
Q Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (850)
.+.+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+++|++|
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999865 58899999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043440 401 VSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDY 480 (850)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 480 (850)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++++|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886 36788
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 043440 481 TSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHE-SGLSPNVVTYTILINGF 559 (850)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~ 559 (850)
+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 89999999999999999999999998888888988999888888888888888888888875 58888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 560 CRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAAL 639 (850)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 639 (850)
++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+.++. +..+|+.|++.|++.|++++|.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHH
Confidence 8888888888887765 46678888888888888888888888888887654322 4667888888888888888888
Q ss_pred HHHHHHHHCCCC
Q 043440 640 DMHRKMINDGIP 651 (850)
Q Consensus 640 ~~~~~~~~~~~~ 651 (850)
++++.|.+.|+.
T Consensus 549 ~v~~~m~~~g~~ 560 (697)
T PLN03081 549 KVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHcCCc
Confidence 888888888764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-47 Score=452.80 Aligned_cols=799 Identities=12% Similarity=0.067 Sum_probs=474.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHH-H-------
Q 043440 9 VISSLLSCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAI-I------- 80 (850)
Q Consensus 9 ~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~-~------- 80 (850)
..+..+..+|+++.|...|+.+..... .++.++..+..++.+.|+ +++|...+++++..+|....... +
T Consensus 27 ~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (899)
T TIGR02917 27 EAAKSYLQKNKYKAAIIQLKNALQKDP--NDAEARFLLGKIYLALGD-YAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103 (899)
T ss_pred HHHHHHHHcCChHhHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCChhhhHHHHHHHHHHC
Confidence 344455678999999999998866543 578999999999999996 99999999999987654322110 0
Q ss_pred ---HHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043440 81 ---DHLIETAKRF---DFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFY 154 (850)
Q Consensus 81 ---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 154 (850)
...++..... ..+.....+..++..|...|++++|...|+++.+.++. +...+..++..+...|++++|..++
T Consensus 104 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 182 (899)
T TIGR02917 104 GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEARALI 182 (899)
T ss_pred CCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHHHHHHH
Confidence 1111112111 22345567888889999999999999999999887664 4567788888999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 043440 155 NKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVP 234 (850)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 234 (850)
+++.+..+ ++...+..+...+...|++++|...|+.+....+. +..++..++..+...|++++|...++.+.+..+..
T Consensus 183 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 260 (899)
T TIGR02917 183 DEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260 (899)
T ss_pred HHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99887643 46778888888889999999999999998877543 67778888888888899999999888888765544
Q ss_pred ChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043440 235 SRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEG 314 (850)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (850)
...+...+..+...|++++|...|+++.+.++. +...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 338 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASI 338 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 335555666677778888888888777765432 33344555666667777777777777776642 2344555666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043440 315 CCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEAC 394 (850)
Q Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (850)
+.+.|++++|...+..+.... +.+...+..+...+.+.|++++|.+.|+++.+..|.+...+..++..+...|++++|+
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Confidence 677777777777777666543 3345566666666777777777777777776666666666666666666666666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 395 NLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAK 474 (850)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 474 (850)
..++++.+.... .......++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...|+++.+..
T Consensus 418 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 418 ADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 666666654322 1223334444555555555555555555543 23344455555555555555555555555554432
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC----------
Q 043440 475 ISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESG---------- 544 (850)
Q Consensus 475 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------- 544 (850)
+.+...+..+...+...|++++|.+.++++.+.++ .+..++..+...+.+.|++++|...++++.+.+
T Consensus 496 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 573 (899)
T TIGR02917 496 -PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL 573 (899)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHH
Confidence 22333444444555555555555555555544322 133444444444444555555555555444432
Q ss_pred -----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHH
Q 043440 545 -----------------------LSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDME 601 (850)
Q Consensus 545 -----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 601 (850)
.+.+...|..++.++...|++++|...++.+.+... .+...+..+...|...|+++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHH
Confidence 133444444444444444445555544444444321 13344444444444445555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 602 SACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEML 681 (850)
Q Consensus 602 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 681 (850)
+|...|+++.+..+ .+..++..++..+...|++++|.++++.+.+.+ +.+...+..++..+...|++++|.+.++++.
T Consensus 653 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 653 KAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555544444321 134444444444555555555555555444443 3344444445555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043440 682 SKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTT 761 (850)
Q Consensus 682 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 761 (850)
+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+..++..++..|...|++++|...|+++++..+. +...
T Consensus 731 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 806 (899)
T TIGR02917 731 KR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVV 806 (899)
T ss_pred hh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHH
Confidence 42 2333444445555555555555555555555432 224445555555555555555555555555554432 4444
Q ss_pred HHHHHhhhhcCCchHHhhccchhhhhhhhhhHHhhcCCchhhh---HHHHhhchhhhhhHHHHhHHHHhhhcCCCCCcc
Q 043440 762 YDILVNGKSRSDTWARKKEKMPACRKHHSMRIELLELPRMSNY---RKVLVRSSSQLMDQAEVRKESLRQRQNCSPVGD 837 (850)
Q Consensus 762 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~y---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 837 (850)
+..+...+...|+ .+|. ..+... ....|+.... ...+....|++.+|.+.+.++++..|..|..-.
T Consensus 807 ~~~l~~~~~~~~~-~~A~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRAL------EYAEKA---LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred HHHHHHHHHhcCc-HHHH------HHHHHH---HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 5555555555555 3332 111111 1112322222 122345668888888888888877666544433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.8e-46 Score=447.02 Aligned_cols=799 Identities=13% Similarity=0.073 Sum_probs=587.1
Q ss_pred CCCCChhHHHHHHhcCCCChHHHHHHHHHhhhhcC---------------------------------CCCcHhHHHHHH
Q 043440 1 PTDLSQTSVISSLLSCRNEPVSAFEYFKRVERRRG---------------------------------FLKSLDTFCVLL 47 (850)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~---------------------------------~~~~~~~~~~~~ 47 (850)
|++......++.++..+++++.|+..|+.+..... ...+...+..+.
T Consensus 53 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 132 (899)
T TIGR02917 53 PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRG 132 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHH
Confidence 34444445566666677788888888777644321 011233444444
Q ss_pred HHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHH--------------HHHHHhhhCCCCCCHHHHHHHHHHHHhcCChh
Q 043440 48 HILMKDRESHRYARNLLNHYVSGGSEPTSAAIID--------------HLIETAKRFDFDLDSGVFSYLLRSYVRADRIN 113 (850)
Q Consensus 48 ~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 113 (850)
.++...++ +++|...+++++...|......+.- .+++.+.. ..+.+...+..++..+...|+++
T Consensus 133 ~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~ 210 (899)
T TIGR02917 133 LAYLGLGQ-LELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT-ADPGNVDALLLKGDLLLSLGNIE 210 (899)
T ss_pred HHHHHcCC-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHhcCCHH
Confidence 55555553 5555555555555443322110000 00000000 12344455555556666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043440 114 DAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAK 193 (850)
Q Consensus 114 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (850)
+|...|+++...++. +..++..++.++...|++++|...++.+.+..+. +...+......+...|++++|...|+.+.
T Consensus 211 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 211 LALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 666666665554432 4445555555666666666666666665554322 22233333334455666666666666665
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHH
Q 043440 194 ALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVA 273 (850)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 273 (850)
+.++. +...+..+...+...|++++|...++++.+..+.....+..++..+.+.|++++|...++.+.... +.+...+
T Consensus 289 ~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 366 (899)
T TIGR02917 289 KSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAAL 366 (899)
T ss_pred HhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 54432 223344445566667777777777777776544333367777777888888888888888777654 3366777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 043440 274 TSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA 353 (850)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (850)
+.++..+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... ........++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhc
Confidence 788888888888888888888887752 23556677777788888888888888888877542 2344556677788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043440 354 QLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFS 433 (850)
Q Consensus 354 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (850)
|++++|..+++.+....|.+..++..++..+...|++++|...|+++.+.... +...+..+...+...|++++|.+.++
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998888888889999999999999999999999999876432 55677788888999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 043440 434 EMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPK 513 (850)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 513 (850)
.+.+.. +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.. +.+
T Consensus 524 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 600 (899)
T TIGR02917 524 KVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS 600 (899)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 998864 4477888999999999999999999999998765 5566778889999999999999999999998764 446
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 043440 514 CLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLING 593 (850)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 593 (850)
..+|..+...+...|++++|...|+++.+.. +.+...+..++..+.+.|++++|...++++.+.. +.+..++..++..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 7889999999999999999999999999875 6678889999999999999999999999999864 3368899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043440 594 FCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTA 673 (850)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 673 (850)
+...|++++|..+++.+.+..+ ++...+..++..+...|++++|+..|+++...+ |+..++..++.++...|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998754 477888899999999999999999999999874 4457788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 674 SNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 674 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
.+.++++++. .+.+..++..+...|...|++++|.+.|+++.+.. ++++.+++.++..+...|+ ++|+.+++++.+.
T Consensus 756 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9999999986 35678899999999999999999999999999864 3478889999999999999 8899999999986
Q ss_pred CCCCCHHHHHHHHhhhhcCCchHHhhccchhhhhhhhhhHHhhcCCchhhhHHHHhhchhhhhhHHHHhHHHH
Q 043440 754 GLVPDDTTYDILVNGKSRSDTWARKKEKMPACRKHHSMRIELLELPRMSNYRKVLVRSSSQLMDQAEVRKESL 826 (850)
Q Consensus 754 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~y~~~l~~~~~~~~~~~~~~~~~~ 826 (850)
.+. ++.++..+...+.+.|++++|.+ .+..+.......|.........+...|+.++|.+.+.+.+
T Consensus 833 ~~~-~~~~~~~~~~~~~~~g~~~~A~~------~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 APN-IPAILDTLGWLLVEKGEADRALP------LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHH------HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 554 56778889999999999998853 3333332222222222222223567789999988876543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3e-31 Score=315.43 Aligned_cols=638 Identities=11% Similarity=0.036 Sum_probs=469.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----------
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVT---------- 168 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 168 (850)
....++.....++.+.|.+.+.++....+. +..++..++..+.+.|+.++|...++++.+..+. +...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 444567777899999999999998887766 5677788888899999999999999999887532 2222
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 043440 169 ------IRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLI 242 (850)
Q Consensus 169 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 242 (850)
...+.+.+.+.|++++|...|+.+.+..+.................|+.++|+..++++.+..+.....+..++
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 13334567888999999999999887644322222111122223458999999999999987655444888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCc--HHHH-----------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043440 243 GACVKHGNLTEAFRLKDEMMSCGKPMN--LVVA-----------------TSLMKGYYKQGDLSSALELLDKIKEDGLSP 303 (850)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~-----------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (850)
..+...|+.++|+..++++........ ...| ...+..+-.....+.|...+.+.......|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 999999999999999998866421100 1111 111111111223445556665554432233
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCH--hHH----
Q 043440 304 NKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANV--FTY---- 377 (850)
Q Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~---- 377 (850)
+.. .......+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|+++++..|.+. ..|
T Consensus 269 ~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 322 2244567788999999999999998864 33678888899999999999999999999998877322 222
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 043440 378 --------NDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSV 449 (850)
Q Consensus 378 --------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 449 (850)
......+.+.|++++|+..|+++++..+. +...+..+...+...|++++|++.|+++++.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 23355677899999999999999987432 55677788889999999999999999999863 335566667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC--------CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 450 LIDGYFKQGDAERAFDVLDQMENAKIS--------PTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSII 521 (850)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 521 (850)
+...|. .++.++|+.+++.+...... .....+..+...+...|++++|++.+++.++..+. +...+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 777664 46789998888765432100 01223455677788899999999999999987443 566777888
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH---------hhHHHHHH
Q 043440 522 DGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDA---------TAYGSLIN 592 (850)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~li~ 592 (850)
..|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. ..+..+..
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999998764 456666666666677889999999998876543222221 12234567
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043440 593 GFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLT 672 (850)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 672 (850)
.+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|+++++.. |.+..++..++..+...|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 78899999999998872 23466677889999999999999999999999985 7788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043440 673 ASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLT--P---NVFIFNTLIAGYFKEGNLQEAFRLH 747 (850)
Q Consensus 673 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (850)
|++.++...+.. +.+...+..+..++...|++++|.++++++++.... | +...+..++..+...|++++|+..|
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888742 334567777888999999999999999999875321 2 2346777789999999999999999
Q ss_pred HHHHH
Q 043440 748 NEMLD 752 (850)
Q Consensus 748 ~~~~~ 752 (850)
++.+.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.4e-31 Score=314.03 Aligned_cols=656 Identities=12% Similarity=0.060 Sum_probs=383.5
Q ss_pred HhcCCCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCC
Q 043440 13 LLSCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDF 92 (850)
Q Consensus 13 l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (850)
+...+++++.|.+.+.++..... .+++++..++.++.+.|+ .++|...+++++...|...........+.. .
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~-~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~-----~ 108 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGD-SDGAQKLLDRLSQLAPDSNAYRSSRTTMLL-----S 108 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHh-----c
Confidence 44578999999999998865432 578999999999999996 999999999999987766544322222221 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVM 172 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (850)
.++......+++.+.+.|++++|++.|+++...++.................|+.++|+..|+++.+..+. +...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 24455567778889999999999999999987765532211111222223469999999999999988543 66778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH---H-----------------HHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 043440 173 MRACLKEDTTEEAEKYFRDAKALGVKLDARA---Y-----------------RMVIQALCRKPNLKVACGLVKEMRDMGR 232 (850)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 232 (850)
...+...|++++|+..++++...... +... | ...+..+-.......|...+.+......
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 89999999999999999998764211 1111 1 1111111111123334444444333222
Q ss_pred CCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHH---
Q 043440 233 VPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN-KVTF--- 308 (850)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~--- 308 (850)
.|......++..+...|++++|+..|++.++..+ .+..++..+...|.+.|++++|+..|++..+..+... ...|
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 2222223345556666666666666666665432 2555666666666666666666666666665322211 1111
Q ss_pred ---------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHH
Q 043440 309 ---------AVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYND 379 (850)
Q Consensus 309 ---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (850)
......+.+.|++++|+..|+++++.. +.+...+..+...+...|++++|++.|+++++..|.+..++..
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 111234445555555665555555542 2234444455555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 043440 380 LLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGD 459 (850)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (850)
+...|. .++.++|+.+++.+...... ..... .. ......+..+...+...|+
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~-~~~~~------------------------~~--~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRR-SIDDI------------------------ER--SLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHH-HHHHH------------------------HH--HhhhhHHHHHHHHHHHCCC
Confidence 555443 23455555555443221000 00000 00 0001123334444444555
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 043440 460 AERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYRE 539 (850)
Q Consensus 460 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 539 (850)
+++|++.|++..+.. +.+...+..+...|.+.|++++|...++++++..+. +...+..+...+...++.++|+..++.
T Consensus 477 ~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 477 WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 555555555444432 223334444444444555555555555554443211 222222222333344455555554444
Q ss_pred HHHcCCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043440 540 MHESGLSPNV---------VTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAEL 610 (850)
Q Consensus 540 ~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 610 (850)
+......++. ..+..+...+...|+.++|+.+++. .+.+...+..+...+.+.|++++|+..|+++
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322111111 1123445667778888888887762 2345566677778888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC-
Q 043440 611 LEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGI--EP- 687 (850)
Q Consensus 611 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~- 687 (850)
++..+. +...+..++..|...|++++|++.++.+.+.. +.+..++..+..++...|++++|.+++++++.... +|
T Consensus 630 l~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 630 LTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc
Confidence 876433 67777888888888888888888888777653 45566677777788888888888888888876421 11
Q ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 688 --DIITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 688 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
+...+..+...+...|+.++|+..|++.+.
T Consensus 708 ~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 708 MESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 224556667777888888888888888753
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=7.6e-26 Score=255.61 Aligned_cols=631 Identities=11% Similarity=0.037 Sum_probs=408.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043440 104 RSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTE 183 (850)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (850)
.-+...|++++|+..|+++++..+.. ..++..++..|...|+.++|+..+++..+.+ |+...+..++..+ ++++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccCh
Confidence 34445699999999999999998885 7888999999999999999999999999884 4444444444333 8999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHH--------HHcCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHH
Q 043440 184 EAEKYFRDAKALGVKLDARAYRMVIQA--------LCRKPNLKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTE 253 (850)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 253 (850)
+|..+++++....+. +..++..+... |.+. ++|.+.++ .....+.|.. ....+..+|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 999999999988655 55566555555 5554 55555555 3333344444 45555999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 254 AFRLKDEMMSCGKPMNLVVATSLMKGYYK-QGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMK 332 (850)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (850)
|+..+.++.+.++. +......|...|.. .++ +++..+++.. .+.+...+..++..|.+.|+.++|.+++.++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999998644 56667788888888 477 8888886642 44678889999999999999999999999986
Q ss_pred HCCCC-CCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043440 333 HMGIK-PSVFIVNSLLCGFLKAQLL-EEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV 410 (850)
Q Consensus 333 ~~~~~-~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 410 (850)
..-.. |+..++..++. +.+.. ..|..-|.+ +....-......++..+.+.++++.+.++.. +.|...
T Consensus 275 ~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 343 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLS---KYSANPVQALANYTV--QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANE 343 (987)
T ss_pred ccccCCCccHHHHHHHH---hccCchhhhccchhh--hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcch
Confidence 54322 44444444432 22222 112222221 1100111223334677777777775554421 223322
Q ss_pred hHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHH
Q 043440 411 SYNNMILAH--CTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENA--KISPTDYTSNIII 486 (850)
Q Consensus 411 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~ 486 (850)
. ..++.. ...+...++......|.+.. +-+......+.....+.|+.++|.++|+..... +...+....+.++
T Consensus 344 ~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 344 M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 2 122222 23355666666666666642 225555555556666777777777777776652 1122333444566
Q ss_pred HHHHHcCC---hhHHHHH-------------------------HHHHHHCCCCC--CHHHHHHHHHHHhcCCChHHHHHH
Q 043440 487 NGLCKAGR---TSVAWDK-------------------------LKKMVEKGFIP--KCLTYNSIIDGFVKEDDMISALTV 536 (850)
Q Consensus 487 ~~~~~~g~---~~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 536 (850)
..|.+.+. ..++..+ +...+.. .++ +...|..+..++.. ++.++|+..
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 66665554 2222222 1111111 122 45566666666665 677778887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 043440 537 YREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLS 616 (850)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 616 (850)
+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|++++|...+++.++..+.
T Consensus 499 ~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 499 WLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 7777665 355444444445556788888888888877554 334445566677777888888888888888776422
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 617 PNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLI 696 (850)
Q Consensus 617 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 696 (850)
+...+..+.......|++++|+..|++.++.. |+...+..+..++.+.|++++|+..++++++.. +.+...++.+.
T Consensus 575 -~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG 650 (987)
T PRK09782 575 -DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALG 650 (987)
T ss_pred -cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33333333344445588888888888888763 467778888888888888888888888888742 33455777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCch
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTW 775 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 775 (850)
.++...|++++|+..+++.++. .| +...+..++.++...|++++|+..|++.++..+. +..+............++
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHH
Confidence 7888888888888888888774 34 6777888888888888888888888888765433 223333333344444444
Q ss_pred HHh
Q 043440 776 ARK 778 (850)
Q Consensus 776 ~~a 778 (850)
..+
T Consensus 728 ~~a 730 (987)
T PRK09782 728 RRL 730 (987)
T ss_pred HHH
Confidence 444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2e-25 Score=252.29 Aligned_cols=664 Identities=11% Similarity=0.019 Sum_probs=452.2
Q ss_pred HHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 043440 47 LHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERD 126 (850)
Q Consensus 47 ~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 126 (850)
.......|+ +++|..+++++++..|. +..++..|+..|...|++++|+..++++.+.+
T Consensus 51 a~~~~~~Gd-~~~A~~~l~~Al~~dP~---------------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld 108 (987)
T PRK09782 51 ALKAQKNND-EATAIREFEYIHQQVPD---------------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH 108 (987)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHHhCCC---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 333444474 99999999999986553 35567889999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHhhCCCC
Q 043440 127 IIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA--------CLKEDTTEEAEKYFRDAKALGVK 198 (850)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~ 198 (850)
+. +...+..+... +++++|..+|+++....+. +..++..+... |.+. ++|...++ .....+.
T Consensus 109 P~-n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~ 178 (987)
T PRK09782 109 PG-DARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAAS 178 (987)
T ss_pred cc-cHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCC
Confidence 73 55555554322 9999999999999988543 34444444443 5555 55555554 3333344
Q ss_pred CCHHHHHHH-HHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 043440 199 LDARAYRMV-IQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVK-HGNLTEAFRLKDEMMSCGKPMNLVVATSL 276 (850)
Q Consensus 199 ~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 276 (850)
|++.+.... ...|.+.|++++|+..+.++.+.++.+......|..+|.. .++ +.+..++... ...++..+..+
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~al 253 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITY 253 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHH
Confidence 455555444 8999999999999999999999876665578888888888 477 8888886643 23588899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhc
Q 043440 277 MKGYYKQGDLSSALELLDKIKEDGLS-PNKVTFAVLIEGCCTNGKVE-KGYELYTQMKHMGIKPS-VFIVNSLLCGFLKA 353 (850)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 353 (850)
+..|.+.|+.++|.++++++...... |+..+|--++ .+.+... .|..-|.+ . +.++ ......++..+.+.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998653222 4444443332 2322221 11111111 0 0111 11222335566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043440 354 QLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFS 433 (850)
Q Consensus 354 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (850)
++++.+.++ +...|.+.. ...-.......+...++...+..|...... +....-.+.-...+.|+.++|..+|+
T Consensus 327 ~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 327 GQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred cHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666655444 222222221 111111222335556666666666554111 33333333334456666777777776
Q ss_pred HHHhC-C-CCCCHHhHHHHHHHHHhcCC---HHHHH-------------------------HHHHHHHhCCCCC--Chhh
Q 043440 434 EMLEK-R-VTPNVVTYSVLIDGYFKQGD---AERAF-------------------------DVLDQMENAKISP--TDYT 481 (850)
Q Consensus 434 ~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~A~-------------------------~~~~~~~~~~~~~--~~~~ 481 (850)
..... + ...+.....-++..|.+.+. ..++. ..+....... ++ +...
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a 479 (987)
T PRK09782 401 QRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAA 479 (987)
T ss_pred HhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHH
Confidence 66552 1 11223333355555555544 22222 2222222211 34 5677
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043440 482 SNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCR 561 (850)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 561 (850)
|..+..++.. ++..+|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 8888877776 8999999988888875 355544444455557899999999999998665 5556667778888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043440 562 KNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDM 641 (850)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 641 (850)
.|+.++|...++..++.++. ....+..+.......|++++|...+++.++.. |+...+..+..++.+.|++++|+..
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999886422 33333344444556699999999999999864 5688899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043440 642 HRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLT 721 (850)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 721 (850)
|++.+... |.+...++.+...+...|++++|++.++++++.. +.+...+..+..++...|++++|+..|++.++. .
T Consensus 632 l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~ 707 (987)
T PRK09782 632 LRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--I 707 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 99999986 7788999999999999999999999999999852 446778999999999999999999999999984 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCch
Q 043440 722 P-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTW 775 (850)
Q Consensus 722 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 775 (850)
| +..+.........+..+++.|.+.+.+.... .|+..........+...+++
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--SFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--CccchhccccchHhhhcccc
Confidence 6 4466777888888888899999988888763 34444333333334444443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.3e-25 Score=233.29 Aligned_cols=659 Identities=14% Similarity=0.104 Sum_probs=486.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCH-HHHHHHHHHHHHcC-----------CHHHHHHHHHH
Q 043440 95 DSGVFSYLLRSYVRADRINDAVDCCNGMIER------DIIPLL-RSMNSVLKALVRRN-----------LIDEAKEFYNK 156 (850)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~ 156 (850)
...+|..+...|+++|..++.+.+++..... ++..+. ..++.+..-|...+ .+..|..+|..
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 3467999999999999999999999876621 111111 12333333332222 23445555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 043440 157 MNLKGLGVDSVTIRVMMRACLKEDT--TEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVP 234 (850)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 234 (850)
........+...+ .-...|...|. ++.|...|..+.+..+ +|+..+-.-.......|+|..|+.+|+.++...+..
T Consensus 120 A~ki~m~~~~~l~-~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 120 ADKIDMYEDSHLL-VQRGFLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHHhhccCcchhh-hhhhhhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 4433222111111 11112233333 6999999999988754 355554444555567889999999999998877665
Q ss_pred Ch-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043440 235 SR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYK---QGDLSSALELLDKIKEDGLSPNKVTFAV 310 (850)
Q Consensus 235 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 310 (850)
.. ....++.++.+.|+.+.|...|++.++.++ .++.++-.|...-.. ...+..+..++.+.-.. -.-|+...+.
T Consensus 198 ~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~ 275 (1018)
T KOG2002|consen 198 KADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNH 275 (1018)
T ss_pred CCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHH
Confidence 55 777888999999999999999999999654 244444333333222 23456677777777654 3347788899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-HhHHHHHHHHHHhc
Q 043440 311 LIEGCCTNGKVEKGYELYTQMKHMGIKPS--VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIAN-VFTYNDLLAWLCKR 387 (850)
Q Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 387 (850)
|...|.-.|++..+..+...+........ ...|-.+..+|-..|++++|...|-+..+..+.+ +..+.-+++.|...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 99999999999999999999987542211 3457778899999999999999999999998855 77888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 043440 388 GKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVK----NMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERA 463 (850)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (850)
|+++.+...|+...+..+. +..+...+...|...+ ..+.|..++.+..+.- +.|...|..+...+.+..-+..
T Consensus 356 ~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s- 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS- 432 (1018)
T ss_pred chHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-
Confidence 9999999999999987322 4456666666666554 5678888888888763 4588889888888877665544
Q ss_pred HHHHHHHH----hCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHhcCCCh
Q 043440 464 FDVLDQME----NAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEK---GFIPKC------LTYNSIIDGFVKEDDM 530 (850)
Q Consensus 464 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~ 530 (850)
+..|..+. ..+-.+.+...|.+...+...|++.+|...|.+.... ...+|. .+--.+....-..+++
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 76665544 4455577889999999999999999999999998765 122222 2233455666778899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043440 531 ISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAEL 610 (850)
Q Consensus 531 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 610 (850)
+.|.+.|..+++.. |.-+..|..++...-..+...+|...+....+.+ ..++..++.+...|.+...+..|.+-|..+
T Consensus 513 ~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 99999999999873 4344555555544444578889999999998764 347788888888999999999999977777
Q ss_pred HHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043440 611 LEVG-LSPNTVVYNSMINGFRN------------LGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLY 677 (850)
Q Consensus 611 ~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 677 (850)
.+.- ..+|..+..+|++.|.+ .+..++|+++|.++++.+ |.|..+-|.++-+++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 6542 23577777777776532 344788999999999987 889999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 678 SEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCL-TPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLV 756 (850)
Q Consensus 678 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 756 (850)
.+..+.. .....+|..+.++|..+|++-.|+++|+...++-. ..++.+...|++++.+.|.+.+|.+.........+.
T Consensus 670 sqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 670 SQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 9999863 33556899999999999999999999999877533 347888999999999999999999999999886665
Q ss_pred CCHHHHHH
Q 043440 757 PDDTTYDI 764 (850)
Q Consensus 757 p~~~~~~~ 764 (850)
-...-|+.
T Consensus 749 ~~~v~FN~ 756 (1018)
T KOG2002|consen 749 NTSVKFNL 756 (1018)
T ss_pred cchHHhHH
Confidence 33444444
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-24 Score=226.52 Aligned_cols=706 Identities=15% Similarity=0.121 Sum_probs=491.4
Q ss_pred CChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHH
Q 043440 18 NEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSG 97 (850)
Q Consensus 18 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (850)
.|+...+.++..- . ...+.|...+.-+++.|+ .++...+|+......... ....-... ..
T Consensus 25 PD~~ev~~IL~~e-~-----a~le~wi~~AleYy~~gk-~eefi~iLE~g~~~~~~~-y~d~~~~~------------~~ 84 (1018)
T KOG2002|consen 25 PDATEVLSILKAE-Q-----APLEAWIEIALEYYKQGK-TEEFIKILESGLIDANEE-YADVKSDQ------------MK 84 (1018)
T ss_pred CChHHHHHHHHHh-c-----CchhHHHHHHHHHHhccc-HHHHHHHHHhhhhcccch-hcchHHHH------------HH
Confidence 4666666666532 1 124789999999999998 999999998876221100 00000000 11
Q ss_pred HHHHHHHHHHhcC-----------ChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 043440 98 VFSYLLRSYVRAD-----------RINDAVDCCNGMIERDIIPLL-RSMNSVLKALVRRNL--IDEAKEFYNKMNLKGLG 163 (850)
Q Consensus 98 ~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 163 (850)
.++.|...|...+ -+..|.-+|+.+-...-..+. .++.... |...|. ++.|...|..+....+
T Consensus 85 a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~--~l~~~~~~~~~A~a~F~~Vl~~sp- 161 (1018)
T KOG2002|consen 85 ALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGF--LLLEGDKSMDDADAQFHFVLKQSP- 161 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhh--hhhcCCccHHHHHHHHHHHHhhCC-
Confidence 2223333332222 223344455444332221111 1111111 222333 5889999998887743
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHH
Q 043440 164 VDSVTIRVMMRACLKEDTTEEAEKYFRDAKALG--VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNL 241 (850)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 241 (850)
+|+.....-....+..++|..|+.+|..+.... ..+|+. -.+...+.+.|+.+.|+..|+++.+.+|..-.++..|
T Consensus 162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 355555555555678899999999999976543 334432 2334556688999999999999999665222255555
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 043440 242 IGACVKHG---NLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLS--PNKVTFAVLIEGCC 316 (850)
Q Consensus 242 ~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 316 (850)
.-.-.... .+..+..++...-... +.|+++.+.|..-|.-.|++..+..+...+...... --...|..+.++|.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 54443333 4567777777776654 347888999999999999999999999888764211 11345888999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcC----CHHH
Q 043440 317 TNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRG----KVSE 392 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~ 392 (850)
..|++++|...|.+..+..-...+..+..|.++|.+.|+++.+...|+++.+..|.+..+...|+..|...+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 999999999999888876422224455667899999999999999999999999999999999999998876 5677
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 043440 393 ACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEML----EKRVTPNVVTYSVLIDGYFKQGDAERAFDVLD 468 (850)
Q Consensus 393 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (850)
|..++.+..+.- ..|...|..+...+-. ++...++..|..+. ..+..+.+...|.+...+...|++++|...|.
T Consensus 399 a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 399 ASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 777777777653 2366778777776655 44444466666544 44555778889999999999999999999998
Q ss_pred HHHhC---CCCCCh------hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHH
Q 043440 469 QMENA---KISPTD------YTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPK-CLTYNSIIDGFVKEDDMISALTVYR 538 (850)
Q Consensus 469 ~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 538 (850)
..... ...++. .+--.+...+-..++++.|.+.+...++.. |. +..|-.++......+...+|...+.
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLK 554 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence 88765 122232 123334555667789999999999998863 33 3344444433334577889999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHc------------cCCHHHHHH
Q 043440 539 EMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEG-LQLDATAYGSLINGFCR------------RRDMESACK 605 (850)
Q Consensus 539 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~ 605 (850)
...... ..++..++.+...+.+...+..|.+-|..+.+.- ..+|..+.-+|.+.|.+ .+..++|++
T Consensus 555 ~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 555 DALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 888765 6677778888888888888888888777766532 22577777777775542 345788999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 043440 606 LFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK-G 684 (850)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g 684 (850)
+|.+++...++ |...-|.++-.++..|++.+|..+|.++.+.. .....+|..+.++|..+|++..|+++|+...+. .
T Consensus 634 ~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987655 88888999999999999999999999999875 346678899999999999999999999988875 3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------------HHhcCCHHHHHHH
Q 043440 685 IEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAG------------------YFKEGNLQEAFRL 746 (850)
Q Consensus 685 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------------~~~~g~~~~A~~~ 746 (850)
-..+..+...|..++.+.|++.+|.+.+.......+......+|..+.. ....+..++|.++
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 3446778899999999999999999999988875333234445543321 1233567889999
Q ss_pred HHHHHHCCCC
Q 043440 747 HNEMLDKGLV 756 (850)
Q Consensus 747 ~~~~~~~g~~ 756 (850)
|..|...+..
T Consensus 792 F~~ls~~~d~ 801 (1018)
T KOG2002|consen 792 FTELSKNGDK 801 (1018)
T ss_pred HHHHHhcCCC
Confidence 9999876654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=8.6e-27 Score=231.01 Aligned_cols=482 Identities=17% Similarity=0.172 Sum_probs=361.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCC
Q 043440 310 VLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGK 389 (850)
Q Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 389 (850)
.|..-..+.|++++|.+.-...-..+ +.+......+-..+.+..+++.....-...++..+.-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556666666666554443332 11222223333455566666666666666666666666677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHH
Q 043440 390 VSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVV-TYSVLIDGYFKQGDAERAFDVLD 468 (850)
Q Consensus 390 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 468 (850)
+++|+.+++.+++...+ ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+....-..|++++|...|.
T Consensus 132 ~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 77777777777775322 3457777777777777777777777777764 34433 23334444555778888888777
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 043440 469 QMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPK-CLTYNSIIDGFVKEDDMISALTVYREMHESGLSP 547 (850)
Q Consensus 469 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 547 (850)
+.++.. +.=.+.|..|...+..+|+...|+..|++.++. .|+ ...|-.|...|...+.+++|+..|.+..... +.
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 777653 223457788888888888888888888888875 343 4678888889999999999999998887763 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 548 NVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMIN 627 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 627 (850)
..+.+..+...|...|.++.|+..+++.++..+. -+.+|+.|..++-..|+..+|...+++.+...+. ...+.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 6677888888899999999999999999886322 4678999999999999999999999999987433 5678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHH
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDII-TYTVLINGLYGKGQLE 706 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~ 706 (850)
.|...|.+++|..+|+...+-. |.-....+.|...|-++|++++|+..++++++ +.|+.. .|+.+...|-..|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999999874 44567899999999999999999999999998 778754 8999999999999999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHhhhhcCCchHHhhccchh
Q 043440 707 NARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD-DTTYDILVNGKSRSDTWARKKEKMPA 784 (850)
Q Consensus 707 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 784 (850)
.|++.+.+.+. +.| =.++++.|+.+|...|+..+|+.-|++.++ ++|| +..+..++.++.-..+|.+-.+.+..
T Consensus 440 ~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 440 AAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 99999999998 556 367799999999999999999999999997 5566 45577777777777788776655555
Q ss_pred hhhhhhhhHHhhcCCchhhhHHHH
Q 043440 785 CRKHHSMRIELLELPRMSNYRKVL 808 (850)
Q Consensus 785 ~~~~~~~~~~~~~~p~~~~y~~~l 808 (850)
...+..-..+....|+...+..|+
T Consensus 516 l~sivrdql~~~rlpsvhP~hsm~ 539 (966)
T KOG4626|consen 516 LVSIVRDQLEKNRLPSVHPHHSML 539 (966)
T ss_pred HHHHHHHHHhhhcCCccCcccccc
Confidence 555555555556667776655454
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=5.3e-24 Score=211.37 Aligned_cols=448 Identities=16% Similarity=0.146 Sum_probs=339.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 043440 204 YRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ 283 (850)
Q Consensus 204 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 283 (850)
...+..-..+.|++.+|.+.-...-..++........+..++.+..+++....--...++.. +.-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 44556666677888888887766666554444455666677777777776665555544432 23456788888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHHH
Q 043440 284 GDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIV-NSLLCGFLKAQLLEEAYKL 362 (850)
Q Consensus 284 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~ 362 (850)
|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.+.. +.+....-..|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 88888888888888852 225668888888888889999998888888875 4655443 3344555667889999999
Q ss_pred HHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 363 FDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV-VSYNNMILAHCTVKNMDEAYSVFSEMLEKRVT 441 (850)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (850)
+.++++..|.-.++|+.|...+-..|+...|+..|++.++. +|+. ..|..|...|...+.++.|...+.+..... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 99999888878888999999999999999999999998875 4443 578888888888899999998888887752 2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 442 PNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSII 521 (850)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 521 (850)
...+++..+...|..+|.++-|+..|++.++.. +.=+..|+.|..++-..|++.+|.+.+.+.+.... .-....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence 256677778888889999999999999988764 22356788888888888999999888888887532 2456778888
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCCH
Q 043440 522 DGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLD-ATAYGSLINGFCRRRDM 600 (850)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 600 (850)
..|...|.+++|..+|....+.. +.-...++.|...|-+.|++++|+..+++.++. .|+ ..+++.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhH
Confidence 88888888888888888887752 334566788888888888888888888888874 343 46788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043440 601 ESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLL 665 (850)
Q Consensus 601 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 665 (850)
+.|++.+.+.+..++. -....+.|...|-..|++.+|++-|++.++.. |.-+.+|..++.++.
T Consensus 439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHH
Confidence 8888888888876432 35577788888888888888888888888764 444566777766653
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.3e-20 Score=210.95 Aligned_cols=430 Identities=12% Similarity=0.022 Sum_probs=279.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhc
Q 043440 308 FAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKR 387 (850)
Q Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (850)
+...+..+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++++++..|.+..+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334455556666666666666665553 345555666666666666666666666666666666666677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043440 388 GKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVL 467 (850)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (850)
|++++|+..|......+...+. ....++..... ..+........+.. +++...+..+.. |........+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 7777777666555443211111 11111111111 12222222222221 112222222222 21111111111111
Q ss_pred HHHHhCCCCCC-hhhHHHHHHH---HHHcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 043440 468 DQMENAKISPT-DYTSNIIING---LCKAGRTSVAWDKLKKMVEKG-FIP-KCLTYNSIIDGFVKEDDMISALTVYREMH 541 (850)
Q Consensus 468 ~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 541 (850)
....+. .+. ...+..+... ....+++++|.+.|++.++.+ ..| ....|..+...+...|++++|+..|++.+
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111 111 0111111111 123467888999999888764 223 34567778888888999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 043440 542 ESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVV 621 (850)
Q Consensus 542 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 621 (850)
+.. +.+...|..+...+...|++++|+..++++++... .+..+|..+...+...|++++|+..|++.++..+. +...
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHH
Confidence 874 44567888888889999999999999999887643 36788888999999999999999999999887533 5777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 043440 622 YNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDII------TYTVL 695 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~------~~~~l 695 (850)
+..++.++.+.|++++|+..|+++++.. |.+...++.+...+...|++++|+..|++.++.....+.. .++..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8888889999999999999999998864 6678889999999999999999999999998742111111 11222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 696 INGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
...+...|++++|.+++++.++.+ | +..++..++.++.+.|++++|+++|++..+..
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 223344699999999999998853 4 55678999999999999999999999988643
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=7.4e-20 Score=204.85 Aligned_cols=429 Identities=12% Similarity=0.016 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043440 238 YTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCT 317 (850)
Q Consensus 238 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (850)
+..++..+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344555566666666666666665553 2344555556666666666666666666665532 1234455555666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043440 318 NGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLW 397 (850)
Q Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 397 (850)
.|++++|+..|..+...+-..+.. ...++..+.. ..+.......++..+.+...+..+...+ ..........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhh
Confidence 666666666555444322111111 1111111111 1222233333333333333333322222 111111111111
Q ss_pred HHHHhCCCCCCh-hhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 398 QKMVSSGVRPSV-VSYNNMILA---HCTVKNMDEAYSVFSEMLEKR-V-TPNVVTYSVLIDGYFKQGDAERAFDVLDQME 471 (850)
Q Consensus 398 ~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (850)
....+. .+.. ..+..+... ....+++++|.+.|+..++.+ . +.....+..+...+...|++++|+..|++..
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111110 0000 001111100 012244555555555555432 1 1122344444444555555555555555554
Q ss_pred hCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHH
Q 043440 472 NAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVT 551 (850)
Q Consensus 472 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 551 (850)
+.. +.....|..+...+...|++++|...|+++++. . +.+..+
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----------------------------------~-p~~~~~ 401 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----------------------------------N-SEDPDI 401 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------------C-CCCHHH
Confidence 432 112334444444444444555555554444443 2 233344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043440 552 YTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRN 631 (850)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 631 (850)
+..+...+...|++++|+..|++.++..+ .+...+..+...+.+.|++++|+..|++.++..+ .+...++.+...+..
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 44444444444444444444444444321 1333344444444445555555555554444321 134444444555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043440 632 LGNMEAALDMHRKMINDGIPC-----DL-QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQL 705 (850)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 705 (850)
.|++++|+..|++.++..... +. ..++..+..+...|++++|.++++++++.. +.+...+..++..+...|++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 555555555555544432100 00 011111112223455666666666555532 12233455555666666666
Q ss_pred HHHHHHHHHHHh
Q 043440 706 ENARKIFDEMNR 717 (850)
Q Consensus 706 ~~A~~~~~~~~~ 717 (850)
++|++.|++..+
T Consensus 559 ~eAi~~~e~A~~ 570 (615)
T TIGR00990 559 DEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=9.7e-22 Score=209.40 Aligned_cols=327 Identities=14% Similarity=0.159 Sum_probs=240.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCC
Q 043440 453 GYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPK---CLTYNSIIDGFVKEDD 529 (850)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 529 (850)
.+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.++..+..++ ...+..++..|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666543 23344555666666666666666666666655422111 2356667777778888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC----HhhHHHHHHHHHccCCHHHHHH
Q 043440 530 MISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLD----ATAYGSLINGFCRRRDMESACK 605 (850)
Q Consensus 530 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 605 (850)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888877653 55667777888888888888888888888877543322 1245567778888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 606 LFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGI 685 (850)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 685 (850)
.|+++.+... .+...+..++..+.+.|++++|+++|+++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 9999987643 2566788889999999999999999999998642222467888999999999999999999999984
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043440 686 EPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFK---EGNLQEAFRLHNEMLDKGLVPDDTTY 762 (850)
Q Consensus 686 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~ 762 (850)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++|+.++++|+++++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 577677788999999999999999999999884 5888899988887775 569999999999999888877776
Q ss_pred HHHHhhhhcCCchHHhhc-cchhhhhhhhhh
Q 043440 763 DILVNGKSRSDTWARKKE-KMPACRKHHSMR 792 (850)
Q Consensus 763 ~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~ 792 (850)
..|.++|...+.-. .-|.|..+.++.
T Consensus 355 ----~~c~~cg~~~~~~~~~c~~c~~~~~~~ 381 (389)
T PRK11788 355 ----YRCRNCGFTARTLYWHCPSCKAWETIK 381 (389)
T ss_pred ----EECCCCCCCCccceeECcCCCCccCcC
Confidence 55877776643321 124455555443
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=5.7e-17 Score=170.01 Aligned_cols=372 Identities=13% Similarity=0.065 Sum_probs=266.8
Q ss_pred HhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 40 LDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCC 119 (850)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (850)
+...-..++.|...|+ +++|..++.++|...| .+...|.+|+..|..+|+.+.+...+
T Consensus 139 l~~ll~eAN~lfarg~-~eeA~~i~~EvIkqdp---------------------~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGD-LEEAEEILMEVIKQDP---------------------RNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCc---------------------cchhhHHHHHHHHHHcccHHHHHHHH
Confidence 4555566677777785 9999999999998654 44567999999999999999999988
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 043440 120 NGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKL 199 (850)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 199 (850)
-.+...++. |...|-.+.....+.|++++|.-+|.+..+..+. +....-.-...|-+.|+...|...|.++....+..
T Consensus 197 llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 197 LLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 777776666 4477888888889999999999999999988543 44445555667788999999999999999875422
Q ss_pred CHH----HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------
Q 043440 200 DAR----AYRMVIQALCRKPNLKVACGLVKEMRDMGRVPS--RVYTNLIGACVKHGNLTEAFRLKDEMMSCG-------- 265 (850)
Q Consensus 200 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------- 265 (850)
|.. .-..+++.+...++-+.|++.++.....+..-. ..++.++..+.+...++.|......+....
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 222 222335666677777999999998887332222 288899999999999999988877765521
Q ss_pred -------------------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHH
Q 043440 266 -------------------KPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDG--LSPNKVTFAVLIEGCCTNGKVEKG 324 (850)
Q Consensus 266 -------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 324 (850)
..++..+ -.+.-++.+....+....+.....+.. +.-+...|.-+..++...|++.+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 1222222 112223333333333333444444433 334556788888899999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 325 YELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG 404 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (850)
+.+|..+.......+..+|-.+..+|...|.+++|++.|++++...|.+..+...|...+.+.|+.++|.+.+..+...+
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99999988765555677888899999999999999999999999999888888889999999999999999988865321
Q ss_pred --------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 405 --------VRPSVVSYNNMILAHCTVKNMDEAYSVFSEML 436 (850)
Q Consensus 405 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (850)
..|+..........+.+.|+.++=+.+-..|+
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222333334455666677666554444444
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.7e-20 Score=199.88 Aligned_cols=296 Identities=16% Similarity=0.123 Sum_probs=146.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhHH
Q 043440 213 RKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN---LVVATSLMKGYYKQGDLSSA 289 (850)
Q Consensus 213 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 289 (850)
..|++++|...|+++.+.++....++..++..+...|++++|..+++.++..+..++ ...+..++..|.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 444555555555555543322211455555555555555555555555544321111 13344555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 290 LELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPS----VFIVNSLLCGFLKAQLLEEAYKLFDE 365 (850)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (850)
..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|++
T Consensus 127 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555443 122344555555555555555555555555554332211 11233344445555555555555555
Q ss_pred HHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043440 366 AVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVV 445 (850)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 445 (850)
+.+..+.+..++..++..+.+.|++++|.+.|+++.+.+......+++.++..|+..|++++|...++++.+. .|+..
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~ 283 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGAD 283 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCch
Confidence 5555544455555555555566666666666665554322211234455555555555555555555555543 23333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCC
Q 043440 446 TYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCK---AGRTSVAWDKLKKMVEKGFIPK 513 (850)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 513 (850)
.+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+..+++.+++++.++++.|+
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 3455555555555555555555555543 3444455544444443 3355555555555555444333
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.8e-19 Score=197.04 Aligned_cols=332 Identities=13% Similarity=0.069 Sum_probs=240.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcC
Q 043440 135 NSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRK 214 (850)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 214 (850)
..++..+.+.|++++|+.+++......+. +...+..++.+....|++++|...|+++....+. +...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence 34566677788888888888888776544 3445555556667788888888888888876543 566777778888888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 043440 215 PNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294 (850)
Q Consensus 215 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (850)
|++++|+..++++.+..+....++..++.++...|++++|...++.+....+. +...+..+ ..+.+.|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 88888888888888754443337778888888888888888888877665433 33333333 34677888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 043440 295 KIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEE----AYKLFDEAVDSG 370 (850)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~ 370 (850)
++.+....++...+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++ |+..|++++...
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 87765333444455555677778888888888888887764 3356677778888888888875 788888888888
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043440 371 IANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVL 450 (850)
Q Consensus 371 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 450 (850)
|.+..++..++..+.+.|++++|+..+++.....+. +...+..+...+.+.|++++|...|+.+...... +...+..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 888888888888888888888888888888876433 3456666777888888888888888888775322 22334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 043440 451 IDGYFKQGDAERAFDVLDQMENA 473 (850)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~ 473 (850)
...+...|+.++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 66778888888888888887765
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4e-19 Score=197.67 Aligned_cols=332 Identities=11% Similarity=0.062 Sum_probs=280.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLK 178 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (850)
....+..+.++|++++|+.++...+...+.+ ...+..++.+....|++++|...|+++....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 4456677889999999999999998887774 445556667888899999999999999987543 56778888899999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHH
Q 043440 179 EDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLK 258 (850)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 258 (850)
.|++++|...++++....+. +...+..++..+...|++++|...++++....+.+...+..++ .+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHH
Confidence 99999999999999987543 6778889999999999999999999999887665544544443 478899999999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHC
Q 043440 259 DEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEK----GYELYTQMKHM 334 (850)
Q Consensus 259 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 334 (850)
+.+++....++...+..++..+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 999886544455556667788999999999999999999864 3367788889999999999986 89999999986
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH
Q 043440 335 GIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV-VSYN 413 (850)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 413 (850)
. +.+..++..+...+.+.|++++|+..+++++...|.+..++..+...+.+.|++++|+..|+++...+ |+. ..+.
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 4 34677889999999999999999999999999999889999999999999999999999999999863 443 3344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 414 NMILAHCTVKNMDEAYSVFSEMLEK 438 (850)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (850)
.+...+...|+.++|...|++..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4567788999999999999999886
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=8.4e-17 Score=168.77 Aligned_cols=657 Identities=12% Similarity=0.075 Sum_probs=353.1
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043440 104 RSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTE 183 (850)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (850)
+.....|++++|..++..+++..+. ....|..|+.+|-..|+.+++...+--.....+. |..-|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 3444557788888877777776655 4456777777777777777777766655554433 5567777777777777777
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhcCCHHHHHHHH
Q 043440 184 EAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-----VYTNLIGACVKHGNLTEAFRLK 258 (850)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~ 258 (850)
+|.-+|.++++..+. +...+-.-+..|-+.|+...|..-|.++....+..+. .-...++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 887777777776543 3333444455666777777777777777775542222 3334456666667667777777
Q ss_pred HHHHhCC-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH----------------------H----HH
Q 043440 259 DEMMSCG-KPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTF----------------------A----VL 311 (850)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------~----~l 311 (850)
+..+..+ -..+...++.++..|.+...++.|......+......+|..-| . .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 7666521 2224445677777777777777777777666552222222111 0 11
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCHhHHHHHHHHHHhcC
Q 043440 312 IEGCCTNGKVEKGYELYTQMKHMG--IKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI-ANVFTYNDLLAWLCKRG 388 (850)
Q Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 388 (850)
.-++......+....+........ +.-++..|..+..+|...|.+.+|+.+|..+....+ .+...|..++.+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 122223333333333333333333 222344555556666666666666666666655554 45556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCCH
Q 043440 389 KVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEK--------RVTPNVVTYSVLIDGYFKQGDA 460 (850)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~ 460 (850)
.+++|.+.|+..+...+. +...-..|...+.+.|+.++|.+.++.+... +..|+........+.+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 666666666666554211 2234444445555566666666666554311 1222233333344445555555
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHH-----
Q 043440 461 ERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALT----- 535 (850)
Q Consensus 461 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----- 535 (850)
++=+.+-..|.... .....+. .+..++... .....+..-.......++.+-.+.++......
T Consensus 543 E~fi~t~~~Lv~~~------~~~~~~f-----~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 543 EEFINTASTLVDDF------LKKRYIF-----PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHHHHHH------HHHHHhc-----chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 54333333333210 0000000 000000000 00000000111111222222222222111111
Q ss_pred -HHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcCH---hhHHHHHHHHHccCCHHHHHHHH
Q 043440 536 -VYREMHESGLSPNV--VTYTILINGFCRKNEIDLALKMRNEMMNEGL--QLDA---TAYGSLINGFCRRRDMESACKLF 607 (850)
Q Consensus 536 -~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~li~~~~~~g~~~~A~~~~ 607 (850)
.+......|+.-+. ..+.-++..+++.+++.+|+.+...+..... .++. ..-...+.+.+..+++..|...+
T Consensus 610 ~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 610 TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11111112222121 2345567788999999999999998876421 1111 12234456677889999999999
Q ss_pred HHHHHc-CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 608 AELLEV-GL--SP-NTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK 683 (850)
Q Consensus 608 ~~~~~~-~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 683 (850)
..++.. +. .| -...||...+...+.++-.--.+++..+.......++.....-.+....++.+..|+..+-++...
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 998865 11 11 234566556666666655444555555444421122333333344556788999999988877764
Q ss_pred CCCCCHHHHHH-HHHHHH----------hCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 684 GIEPDIITYTV-LINGLY----------GKGQLENARKIFDEMNRKCL-TPNVFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 684 g~~~~~~~~~~-l~~~~~----------~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
.||....+. +..++. ++-.+-.+..++.+-.+.-. ....+++..++++|-..|-..-|+.+|++.+
T Consensus 770 --~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL 847 (895)
T KOG2076|consen 770 --NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL 847 (895)
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 455333332 222222 12234556666666554311 1256778899999999999999999999999
Q ss_pred HCCCCC------C------HHHHHHHHhhhhcCCchHHhhc
Q 043440 752 DKGLVP------D------DTTYDILVNGKSRSDTWARKKE 780 (850)
Q Consensus 752 ~~g~~p------~------~~~~~~l~~~~~~~g~~~~a~~ 780 (850)
+..+.+ | ...|+ |.-.|.++|+...|.+
T Consensus 848 ~~~p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SGn~~lArq 887 (895)
T KOG2076|consen 848 EVSPKDVTDPKEDNYDLRKEAAYN-LHLIYKKSGNMQLARQ 887 (895)
T ss_pred CCCccccccccCCcccHHHHHHhh-hhhhhccCCcHHHHHH
Confidence 753211 1 12222 3447888888876654
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=3.6e-15 Score=150.26 Aligned_cols=510 Identities=13% Similarity=0.073 Sum_probs=289.8
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 184 EAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
.=..+++...+.- +.++..|...+ ...+.+.|..++.++.+- -|. ..-|..+|.+..-++.|..+++...+
T Consensus 364 ~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec--cp~--s~dLwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 364 NKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC--CPQ--SMDLWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh--ccc--hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555542 22444454333 445666677777777763 222 22333445566677778888877766
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 043440 264 CGKPMNLVVATSLMKGYYKQGDLSSALELLDKI----KEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPS 339 (850)
Q Consensus 264 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 339 (850)
. ++.+..+|.+-...--.+|..+...++.++- ...|+..+...|..-...|-..|..-.+..+....+..|+...
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 4 5557777777777667777777777776663 3356677777777777777777777777777777776665432
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043440 340 --VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMIL 417 (850)
Q Consensus 340 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 417 (850)
..+|+.-...|.+.+.++-|+.+|..+++..|.+...|...+..--..|..++-..+|++++..-+ .....|-....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ak 592 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAK 592 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHH
Confidence 346666666777777777777777777777776666777666666666777777777776666522 23344544445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhH
Q 043440 418 AHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSV 497 (850)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 497 (850)
.+-..|+...|..++..+.+.... +...|..-+..-....+++.|..+|.+.... .|+...|..-+...--.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 555556666666666666554322 4455555555555566666666666555543 3344444443444444445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043440 498 AWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMN 577 (850)
Q Consensus 498 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (850)
|++++++.++. .|+ -...|..+...+-+.++++.|.+.|..-.+
T Consensus 670 A~rllEe~lk~--fp~----------------------------------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 670 ALRLLEEALKS--FPD----------------------------------FHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHHHh--CCc----------------------------------hHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 55555554443 222 233344444444445555555555544443
Q ss_pred cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043440 578 EGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTY 657 (850)
Q Consensus 578 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 657 (850)
. .+..+..|-.|...--+.|++-.|..++++..-.+++ +...|...|.+-.+.|+.++|..+..++++. +|.+...|
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LW 790 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLW 790 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhH
Confidence 2 2233444555555445555555555555555554433 4555555555555555555555555555554 24444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043440 658 TTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKE 737 (850)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 737 (850)
..-|....+.++-......+++ ...|+.+.-.+...+....++++|.+-|++.++.+ +.+..+|.-+..-+.++
T Consensus 791 aEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~h 864 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRH 864 (913)
T ss_pred HHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHh
Confidence 5555444444443322222222 23455555556666666666666666666666643 12455566666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 043440 738 GNLQEAFRLHNEMLD 752 (850)
Q Consensus 738 g~~~~A~~~~~~~~~ 752 (850)
|.-++-.+++.+...
T Consensus 865 G~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 865 GTEEDQKEVLKKCET 879 (913)
T ss_pred CCHHHHHHHHHHHhc
Confidence 666666666666654
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=1.6e-15 Score=152.73 Aligned_cols=602 Identities=11% Similarity=0.024 Sum_probs=466.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 043440 144 RNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGL 223 (850)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 223 (850)
.++..+|..++..+.+.++. ++..|.+-.+.--..|.+..|..+...=.+. +..+...|..-+ +....+.|..+
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 35677888888888887654 5566766666666778888887766554433 223555564443 45667778888
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043440 224 VKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSP 303 (850)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (850)
....++.-|.....|..-+..- .+...=.+++.+.++. ++.++..|...+. ..+.+.|+-++.+..+. ++.
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccc
Confidence 8888875443322444433322 2233334566666664 4456667765543 45667799999998885 443
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCHhHHH
Q 043440 304 NKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAV----DSGI-ANVFTYN 378 (850)
Q Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~ 378 (850)
+...| .++.+..-++.|..+++...+. ++.+...|.+-...--..|+.+...+++.+.+ ..|. .+...|.
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 44444 4566677789999999998875 67778888887777778899988888887654 3444 6778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 043440 379 DLLAWLCKRGKVSEACNLWQKMVSSGVRPS--VVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFK 456 (850)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (850)
.-...+-..|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|...++. ++.+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 888888888998888888888888776533 358888889999999999999999999986 45577788887777778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 043440 457 QGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTV 536 (850)
Q Consensus 457 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 536 (850)
.|..++-..+|++....- +.....|-.....+-..|+...|+.++..+.+.... +...|..-+..-....+++.|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 899999999999998763 445566777777888899999999999999987544 667888888888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 043440 537 YREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLS 616 (850)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 616 (850)
|.+.... .|+...|.--+...--.+..++|++++++.++. ++.-...|..+...+-+.++++.|.+.|..-.+. ++
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 9998875 677777777777777789999999999999986 3334567888899999999999999999887765 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 617 PNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLI 696 (850)
Q Consensus 617 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 696 (850)
-.+..|..|...-.+.|++-.|..++++..-.+ |.+...|...|.+=.+.|+.+.|..+..++++. .+.+...|.--|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 456788888888889999999999999999887 889999999999999999999999999999986 677788999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCchH
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWA 776 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 776 (850)
....+.++-..+.+.+++. .-|+.....+...+....++++|.+.|++..+.++. +-.+|.-+..-+.+.|.-+
T Consensus 795 ~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHH
Confidence 9888888866666665554 347788889999999999999999999999987654 5667888888888888655
Q ss_pred Hhhc
Q 043440 777 RKKE 780 (850)
Q Consensus 777 ~a~~ 780 (850)
+-++
T Consensus 869 d~ke 872 (913)
T KOG0495|consen 869 DQKE 872 (913)
T ss_pred HHHH
Confidence 5443
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=8.2e-18 Score=191.66 Aligned_cols=417 Identities=12% Similarity=0.065 Sum_probs=261.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHH
Q 043440 303 PNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLA 382 (850)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 382 (850)
.+..-..-.+......|+.++|++++....... +.+...+..+...+...|++++|.+++++++...|.+...+..++.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344445556667777888888888888777522 3345567777778888888888888888888877777777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 043440 383 WLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAER 462 (850)
Q Consensus 383 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (850)
.+...|++++|+..++++++..+. +.. +..+...+...|+.++|+..++++++..+ .+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHH
Confidence 888888888888888888776322 344 66677777778888888888888877632 255555666777777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh---HHHHHHHHH
Q 043440 463 AFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDM---ISALTVYRE 539 (850)
Q Consensus 463 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~ 539 (850)
|++.++.+.. .|+.. ..+ ....+....+ ..+.......+++ ++|+..++.
T Consensus 169 Al~~l~~~~~---~p~~~--~~l--------~~~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEK--RDL--------EADAAAELVR--------------LSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHH--HHH--------HHHHHHHHHH--------------hhcccccChhHHHHHHHHHHHHHHH
Confidence 8777765553 22210 000 0000000000 0000001111222 556666666
Q ss_pred HHHc-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043440 540 MHES-GLSPNV-VTY----TILINGFCRKNEIDLALKMRNEMMNEGLQ-LDATAYGSLINGFCRRRDMESACKLFAELLE 612 (850)
Q Consensus 540 ~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 612 (850)
+.+. ...|+. ..+ ...+..+...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 6543 111211 111 11122334557777777777777665422 22 1222245567777777777777777665
Q ss_pred cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHH
Q 043440 613 VGLSP---NTVVYNSMINGFRNLGNMEAALDMHRKMINDGI-----------PCD---LQTYTTLIAGLLEEGKLLTASN 675 (850)
Q Consensus 613 ~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~ 675 (850)
..... .......+..++...|++++|+++++++..... .|+ ...+..++..+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43211 123445555566777777777777777766420 122 2345566777788888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 676 LYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 676 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
.+++++.. .+.+...+..++..+...|++++|++.++++++. .| +...+..++..+...|++++|..+++++++..
T Consensus 381 ~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888775 3445667788888888888888888888888874 35 46677777778888888888888888888744
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=5.7e-18 Score=192.96 Aligned_cols=420 Identities=10% Similarity=0.065 Sum_probs=279.3
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 043440 268 MNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLL 347 (850)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 347 (850)
.+.....-.+......|+.++|++++.+.... .+.+...+..+...+...|++++|..++++.++.. +.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35555555667777899999999999999763 23455578999999999999999999999998863 34566778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDE 427 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 427 (850)
..+...|++++|+..++++++..|.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999999999998888 999999999999999999999999987443 45566667788888899999
Q ss_pred HHHHHHHHHhCCCCCCHH------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh---hHH
Q 043440 428 AYSVFSEMLEKRVTPNVV------TYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRT---SVA 498 (850)
Q Consensus 428 A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A 498 (850)
|++.++.+.. .|+.. ....++......+. ...+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHH
Confidence 9999987664 23310 01111111110000 011111 344
Q ss_pred HHHHHHHHHC-CCCCCHH-HH----HHHHHHHhcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 043440 499 WDKLKKMVEK-GFIPKCL-TY----NSIIDGFVKEDDMISALTVYREMHESGLS-PNVVTYTILINGFCRKNEIDLALKM 571 (850)
Q Consensus 499 ~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 571 (850)
++.++.+++. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 4444444432 1111110 00 00012233445666666666665554321 111 111234455566666666666
Q ss_pred HHHHHHcCCCc---CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCC
Q 043440 572 RNEMMNEGLQL---DATAYGSLINGFCRRRDMESACKLFAELLEVGL-----------SPN---TVVYNSMINGFRNLGN 634 (850)
Q Consensus 572 ~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~ 634 (850)
|+++....... .......+..++...|++++|...++.+.+..+ .|+ ...+..++..+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 66655432111 122334444455666666666666666655421 123 2345567777888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Q 043440 635 MEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPD-IITYTVLINGLYGKGQLENARKIFD 713 (850)
Q Consensus 635 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (850)
+++|++.++++.... |.+...+..++..+...|++++|++.++++++. .|+ ...+..++..+...|++++|..+++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999988875 777888888888999999999999999998884 454 5566777778888899999999999
Q ss_pred HHHhCCCCCCHHHHHHH
Q 043440 714 EMNRKCLTPNVFIFNTL 730 (850)
Q Consensus 714 ~~~~~~~~p~~~~~~~l 730 (850)
++++. .|+......+
T Consensus 452 ~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 452 DVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHh--CCCCHHHHHH
Confidence 99884 4554433333
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=2e-16 Score=175.96 Aligned_cols=195 Identities=9% Similarity=0.067 Sum_probs=123.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcCHhhHHHHHHHHHc
Q 043440 522 DGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGL-----QLDATAYGSLINGFCR 596 (850)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~ 596 (850)
-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|+.++..+..... .++......|..+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 34556677777777777777666544445666667777777777777777777655321 1223334566667777
Q ss_pred cCCHHHHHHHHHHHHHcCC-------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 597 RRDMESACKLFAELLEVGL-------------SPN-TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIA 662 (850)
Q Consensus 597 ~g~~~~A~~~~~~~~~~~~-------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 662 (850)
.+++++|..+++.+.+..+ .|| ......++..+...|++.+|.+.++++.... |-|......+.+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~ 458 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALAS 458 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7777777777777765311 112 1223345556667777777777777776664 667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 663 GLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 663 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
.+...|.+.+|.+.++.+... .+-+..+....+.++...|++++|..+.+.+.+.
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 777777777777777555543 1223445566666667777777777777777664
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3.2e-16 Score=174.25 Aligned_cols=446 Identities=10% Similarity=0.022 Sum_probs=193.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCC
Q 043440 138 LKALVRRNLIDEAKEFYNKMNLKGLGVDS-VTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPN 216 (850)
Q Consensus 138 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 216 (850)
+-...+.|+++.|+..|+++.+..+ +. .....++..+...|+.++|+..+++..... .........++..+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P--~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGP--LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCc--cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 3344555555555555555555422 21 111144444445555555555555555111 1122222333444555555
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 217 LKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 217 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
+++|+++|+++.+..+....++..++..+...++.++|++.++++.+.. |+...+..++..+...++..+|++.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 5555555555555444433344455555555555555555555554432 22223333333333334444455555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhH
Q 043440 297 KEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFT 376 (850)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (850)
.+.. +.+...+..+..++.+.|-...|.++..+- |+.++-...... +.+.|.+..+...........
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~~~- 262 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRSETE- 262 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccccchh-
Confidence 5531 123444444555555555555555444331 221111111000 001111111110000000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043440 377 YNDLLAWLCKRGKVSEACNLWQKMVSS-GVRPSV-V----SYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVL 450 (850)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 450 (850)
+.--.+.|+.-++.+... +..|.. . ...-.+-++...|++.++++.|+.+...+.+....+...+
T Consensus 263 ---------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 263 ---------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ---------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000123344444444431 111211 1 1122333455566666666666666665544334455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC-----------CCC-
Q 043440 451 IDGYFKQGDAERAFDVLDQMENAKI-----SPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGF-----------IPK- 513 (850)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~- 513 (850)
.++|...++.++|+.+|..+..... +++......|..++..++++++|..+++++.+..+ .|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 6666666666666666666654321 12222234556666666666666666666655311 011
Q ss_pred -H-HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHH
Q 043440 514 -C-LTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLI 591 (850)
Q Consensus 514 -~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 591 (850)
- ..+..++..+...|++.+|.+.++.+.... |-|......+.+.+...|.+.+|+..++...... +.+..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHH
Confidence 1 111222333444444444444444444432 4444444444444444444444444443333321 11333333444
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 043440 592 NGFCRRRDMESACKLFAELLE 612 (850)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~ 612 (850)
..+...+++++|..+.+.+.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh
Confidence 444444444444444444443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=6.5e-17 Score=155.38 Aligned_cols=501 Identities=16% Similarity=0.122 Sum_probs=296.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHHHH
Q 043440 201 ARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN----LVVAT 274 (850)
Q Consensus 201 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~ 274 (850)
-.+...+..-|.....+.+|+..|+-+++....|+. .-..+++.+.+...+.+|++.++-.+..-+..+ ....+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 334455566666667788888888888887777776 556778888888888888888876655322222 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 043440 275 SLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQ 354 (850)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (850)
.+...+.+.|.++.|+..|+...+ ..||..+-..|+-++...|+-++..+.|..|+.....||..-|. +.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~- 350 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KE- 350 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CC-
Confidence 566667778888888888888776 45676666666666667778888888888877654444432221 10
Q ss_pred CHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 355 LLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSE 434 (850)
Q Consensus 355 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (850)
.+-|+....+.-+ ++ ..++.|.+.+ + .+.++++-.-.+
T Consensus 351 --------------~ddp~~~ll~eai----~n-------d~lk~~ek~~-k----------------a~aek~i~ta~k 388 (840)
T KOG2003|consen 351 --------------KDDPDDNLLNEAI----KN-------DHLKNMEKEN-K----------------ADAEKAIITAAK 388 (840)
T ss_pred --------------cCCcchHHHHHHH----hh-------HHHHHHHHhh-h----------------hhHHHHHHHHHH
Confidence 0001111111111 00 1122222210 0 011112211222
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 043440 435 MLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKC 514 (850)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 514 (850)
++.--+.|+... +| +-.++.++......+..+ .-..-..-+.++|+++.|+++++-+.+++-+...
T Consensus 389 iiapvi~~~fa~------g~------dwcle~lk~s~~~~la~d--lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 389 IIAPVIAPDFAA------GC------DWCLESLKASQHAELAID--LEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred Hhccccccchhc------cc------HHHHHHHHHhhhhhhhhh--hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 222112222110 00 111111111110000000 0001122355666666666666666554322222
Q ss_pred HHHHHHHHHHhc--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 043440 515 LTYNSIIDGFVK--EDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLIN 592 (850)
Q Consensus 515 ~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 592 (850)
..-+.|-..+.. -.++..|.+.-+..+... .-+......-.+.-...|++++|.+.+.+.+..........| .+.-
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-nigl 532 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGL 532 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-Hhcc
Confidence 222222222222 235556655555554432 233333333333334567888888888887765322222222 2333
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043440 593 GFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLT 672 (850)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 672 (850)
.+-..|++++|+++|-++... +..+..+...+...|....+..+|++++.++... +|.|+..+.-|.+.|-+.|+-.+
T Consensus 533 t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 466778888888888776543 2236677777888888888888999988887765 57788888888888988898888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 043440 673 ASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIA-GYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 673 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 751 (850)
|.+.+-+--+. ++.+..+..+|..-|....-+++|+.+|++..- +.|+..-|..|+. ++.+.|++++|+.+|+...
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88877665553 566788888888888888888899999988765 6788888988775 5567899999999999888
Q ss_pred HCCCCCCHHHHHHHHhhhhcCCch
Q 043440 752 DKGLVPDDTTYDILVNGKSRSDTW 775 (850)
Q Consensus 752 ~~g~~p~~~~~~~l~~~~~~~g~~ 775 (850)
.+-++ |..+..-|+..+...|..
T Consensus 688 rkfpe-dldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 688 RKFPE-DLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HhCcc-chHHHHHHHHHhccccch
Confidence 76554 788888888888777754
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.8e-14 Score=139.85 Aligned_cols=450 Identities=13% Similarity=0.089 Sum_probs=354.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 043440 165 DSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGA 244 (850)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 244 (850)
+...|......=..++++..|..+|++++..+. .+...|...+.+-.++..+..|..++.+++..-|..+..|..-+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 455566666666778889999999999987663 3777888888888899999999999999998555555588888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043440 245 CVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKG 324 (850)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (850)
--..|++..|.++|++..+ ..|+..+|++.|+.-.+.+.++.|..++++.+- +.|++.+|-.....=.+.|+...|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 8999999999999999987 479999999999999999999999999999887 679999999999999999999999
Q ss_pred HHHHHHHHHC-CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--HhHHHHHHHHHHhcCCHHHHHH-----
Q 043440 325 YELYTQMKHM-GI-KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIAN--VFTYNDLLAWLCKRGKVSEACN----- 395 (850)
Q Consensus 325 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~----- 395 (850)
.++|+.+++. |- ..+...+.+....-.++..++.|.-+|.-+++.-|.+ ...|......--+-|+.....+
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999998764 21 0122344445555557788999999999999988844 5566666666666777444333
Q ss_pred ---HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHH--------HHhcCCHHH
Q 043440 396 ---LWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVV--TYSVLIDG--------YFKQGDAER 462 (850)
Q Consensus 396 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~g~~~~ 462 (850)
-++.++..++ -|-.+|-..++.-...|+.+...++|+..+.+ ++|-.. .|.-.|.. =....+.+.
T Consensus 307 Rk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2455565543 36678888888888889999999999999986 555321 22222211 125778899
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH----HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHH
Q 043440 463 AFDVLDQMENAKISPTDYTSNIIINGL----CKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYR 538 (850)
Q Consensus 463 A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 538 (850)
+.++|+..++. +|...+|+..+--.| .++.++..|.+++..++. ..|...++...|..-.+.++++.+..+|+
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 566677766654333 467899999999998875 46788888888888889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 043440 539 EMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEG-LQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSP 617 (850)
Q Consensus 539 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 617 (850)
+.++.+ |.|..+|......-...|+.+.|..+|+-++... .......|.+.|+.-...|.+++|..+++++++. .+
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~ 538 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQ 538 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cc
Confidence 999987 7788899988888888999999999999988752 2334577888888888999999999999999886 34
Q ss_pred CHHHHHHHHH
Q 043440 618 NTVVYNSMIN 627 (850)
Q Consensus 618 ~~~~~~~l~~ 627 (850)
...+|.+++.
T Consensus 539 h~kvWisFA~ 548 (677)
T KOG1915|consen 539 HVKVWISFAK 548 (677)
T ss_pred cchHHHhHHH
Confidence 5557776654
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=5.7e-15 Score=142.24 Aligned_cols=287 Identities=14% Similarity=0.090 Sum_probs=174.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCHhHHHHHHHH-HHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043440 349 GFLKAQLLEEAYKLFDEAVDSGI-ANVFTYNDLLAW-LCK-RGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNM 425 (850)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~-~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 425 (850)
.+.+.|+++.|++++.-..+.+. .-..+-+.|-.. |.+ -.++.+|...-+..+... .-+......-.+....+|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 35566666666666665555433 111122222222 222 234566666655555331 11222222223334456777
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 043440 426 DEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKM 505 (850)
Q Consensus 426 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (850)
++|.+.+++.+..... -....-.+.-.+-..|++++|++.|-++... +..+..+...+.+.|....+...|++++.+.
T Consensus 507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 7777777777765211 1112222233456677777777777665432 1335556666777777777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHh
Q 043440 506 VEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDAT 585 (850)
Q Consensus 506 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 585 (850)
... ++.|+...+.|.+.|-+.|+-..|.+.+-+--+. +|.+..+..-|...|....-+++++..|++..- ++|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 654 4446677777888888888888887776555444 467777777777777777778888888887654 467888
Q ss_pred hHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 586 AYGSLIN-GFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRK 644 (850)
Q Consensus 586 ~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (850)
-|..++. ++.+.|++.+|.++++.+.+. ++.|......|++.+...|- .++.++-++
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 8887764 445678888888888888775 44577777778877777663 334444333
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.8e-13 Score=130.12 Aligned_cols=438 Identities=11% Similarity=0.076 Sum_probs=297.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043440 200 DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKG 279 (850)
Q Consensus 200 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 279 (850)
+...|-...+--..++++..|..+|++++..+...-..|..-+.+-.++.++..|..++++.+..- |.-...|...+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHH
Confidence 555566666666677899999999999998765544488899999999999999999999998853 2233467777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043440 280 YYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEA 359 (850)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (850)
--..|++..|.++|++..+ ..|+..+|.+.+..=.+....+.|..+|++.+-. .|++.+|......-.++|....|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 7788999999999999988 7999999999999999999999999999998864 68999999988888999999999
Q ss_pred HHHHHHHHHCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHH-----
Q 043440 360 YKLFDEAVDSGI---ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPS-VVSYNNMILAHCTVKNMDEAYS----- 430 (850)
Q Consensus 360 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~----- 430 (850)
.++|+.+++.-. .+...+.+....-..+..++.|..+|+-.++.=++-. ...|..+...--+-|+......
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999999887543 2345566777777778889999999988887622211 2344444433334455433322
Q ss_pred ---HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHH--------HHcCChhH
Q 043440 431 ---VFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTD--YTSNIIINGL--------CKAGRTSV 497 (850)
Q Consensus 431 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~--------~~~g~~~~ 497 (850)
-++.+++.+ +.|-.+|-..++.-...|+.+...++|++.+..- +|-. ..|...|... ....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 244455542 4467777777777777888888888888887653 3321 1222222111 23566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH----hcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043440 498 AWDKLKKMVEKGFIPKCLTYNSIIDGF----VKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRN 573 (850)
Q Consensus 498 A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (850)
+.++++..++. ++...+|+.-+--.| .++.+...|.+++...+.. .|-..+|...|..-.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777776663 222334444333222 3456666666666665533 5666666666666666666667777776
Q ss_pred HHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 574 EMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVG-LSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND 648 (850)
Q Consensus 574 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (850)
+.++-++. +..+|......-...|+.+.|..+|.-.++.. .......|.+.|+--...|.++.|..+|+++++.
T Consensus 462 kfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 462 KFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 66665433 55666666665566666666666666666542 1112334555555555666666666666666665
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.74 E-value=2.5e-13 Score=142.10 Aligned_cols=650 Identities=14% Similarity=0.096 Sum_probs=342.0
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043440 82 HLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKG 161 (850)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 161 (850)
.++.+.+..|..|+..+|..||--|+..|+.+.|- +|.-|..+..+....+++.+..+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34566667799999999999999999999999998 8998888888878888999998888888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHH---HHHHhh----CCCCCCHHHH---------------HHHHHHHHcCCChhH
Q 043440 162 LGVDSVTIRVMMRACLKEDTTEEAEKY---FRDAKA----LGVKLDARAY---------------RMVIQALCRKPNLKV 219 (850)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~g~~~~ 219 (850)
.|.+.||..|..+|...|+...-..+ ++.... .|+. ....+ .+.+....-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 57889999999999999987652222 211111 1221 11111 111222223344444
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043440 220 ACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKED 299 (850)
Q Consensus 220 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (850)
+++++..+....-.. .....++-+.... ....++.......--.++..++..++..-.-.|+.+.|..++.+|.+.
T Consensus 158 llkll~~~Pvsa~~~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHhhCCcccccc--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 444443332211111 1111122222211 222233322222111478999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHH
Q 043440 300 GLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYND 379 (850)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (850)
|.+.+...|-.|+-+ .++...+..++.-|.+.|+.|+..|+...+..+.+.|....+. .+.+....+++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tA 302 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTA 302 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhH
Confidence 998888777776655 7888888999999999999999999988777776655422221 11222222222
Q ss_pred HHHHHHhcC-----CH-----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC-CCHHh
Q 043440 380 LLAWLCKRG-----KV-----SEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKR--VT-PNVVT 446 (850)
Q Consensus 380 l~~~~~~~g-----~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~ 446 (850)
-...-.-+| +. .-....+.+..-.|.......|...+.. ..+|.-++..++-..+..-- .. .++..
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 222222233 11 1112222222223444333444433332 23566666666666654321 11 13334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH--HHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-------C
Q 043440 447 YSVLIDGYFKQGDAERAFDVLD--QMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEK----GFIP-------K 513 (850)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-------~ 513 (850)
+..++.-|.+.-+..-...++. +..... .+......+.....+. +...+..-+..+... ...| -
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 5444444443221111111111 111110 0000000111111110 111111111111100 0000 0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcCHhhHHHHH
Q 043440 514 CLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNE--GLQLDATAYGSLI 591 (850)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li 591 (850)
...-+.++..++..-+..+++..-+.....- -+ ..|..|++.++...+.+.|..+.++.... ....|..-+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 1122344444444444444443333222211 11 45667777777777777777777766532 1233455566677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043440 592 NGFCRRRDMESACKLFAELLEVGLSPN--TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGK 669 (850)
Q Consensus 592 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 669 (850)
+...+.+....+..++.++.+.-...+ ..+.--+.+.-...|+.+.-.++++-+...|+..+ ..++....+.++
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccc
Confidence 777777777777777777665311111 22333344455566666666666666555543321 112222223333
Q ss_pred HHHHHHHH-----------------HHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHH--H-hC--------
Q 043440 670 LLTASNLY-----------------SEMLSKGIEPDIIT---YTVLINGLYGKGQLENARKIFDEM--N-RK-------- 718 (850)
Q Consensus 670 ~~~A~~~~-----------------~~~~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~-~~-------- 718 (850)
...|.+.+ -+++.++-..++.. +..=+..|.+.|++.+|.++.+.= . +.
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de 691 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDE 691 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcccccc
Confidence 33333333 33332211111110 111122366777777777665521 0 00
Q ss_pred C-CCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCC
Q 043440 719 C-LTP---------NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSD 773 (850)
Q Consensus 719 ~-~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 773 (850)
| +.| +......|+..|.+.|+++.|..++.++. +.|...+...|.+.+.+..
T Consensus 692 ~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n 753 (1088)
T KOG4318|consen 692 GEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMN 753 (1088)
T ss_pred CccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhc
Confidence 0 111 12223457889999999999999999997 7788888888888776643
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=9.7e-13 Score=126.40 Aligned_cols=449 Identities=15% Similarity=0.178 Sum_probs=249.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HcCCChhHH-HHHHHHHHHCCCCCChhHHHHHHH
Q 043440 168 TIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQAL--CRKPNLKVA-CGLVKEMRDMGRVPSRVYTNLIGA 244 (850)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~l~~~ 244 (850)
+-+.|+. +..+|...++.-+|+.|...|...++..-..+.... ....+..-| .+-|-.|.+.|-....+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 4444444 345677777777888887777666665554444322 233333211 222333333332222232
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043440 245 CVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKG 324 (850)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (850)
+.|.+.+ -+|+..+ ....++..+|.++|+--..+.|.+++++......+.+..+||.+|.+-+- ...
T Consensus 191 --K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 --KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred --ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3444433 3333332 35567777888888887788888888777665566677778777765432 223
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 325 YELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG 404 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (850)
.++..+|....+.||..|+|+++.+..+.|+++.|.+. |.+++.+|++.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a------------------------------alqil~EmKeiG 307 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA------------------------------ALQILGEMKEIG 307 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH------------------------------HHHHHHHHHHhC
Confidence 67777777777778888888777777777776665443 344556677777
Q ss_pred CCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCC----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 043440 405 VRPSVVSYNNMILAHCTVKNMDE-AYSVFSEMLE----KRVT----PNVVTYSVLIDGYFKQGDAERAFDVLDQMENAK- 474 (850)
Q Consensus 405 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 474 (850)
+.|...+|..+|..+++.++..+ +..++.++.. +.+. .|...+...++.|.+..+.+-|.++..-.....
T Consensus 308 VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N 387 (625)
T KOG4422|consen 308 VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN 387 (625)
T ss_pred CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc
Confidence 77777777777777776666533 3444444332 2222 234455666666777777777777665544321
Q ss_pred ---CCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC
Q 043440 475 ---ISPT---DYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPN 548 (850)
Q Consensus 475 ---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 548 (850)
+.|+ .+-|..+....|+....+.-..+++.|+-.-+.|+..+...++.+..-.+.++-.-+++..+...|..-+
T Consensus 388 ~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 388 WKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 2222 1234556666777777777788888877666667777777777777777777777777777776653333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc-CCHHHH-HHHHHHHHHcCCCCCHHHHHHHH
Q 043440 549 VVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRR-RDMESA-CKLFAELLEVGLSPNTVVYNSMI 626 (850)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~~~~~~~~~~~~p~~~~~~~l~ 626 (850)
.....- ++..+.+..+.|+...-..+-....++ -++.++ ...-.++....+ .....+.++
T Consensus 468 ~~l~ee----------------il~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia 529 (625)
T KOG4422|consen 468 SDLREE----------------ILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIA 529 (625)
T ss_pred HHHHHH----------------HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHH
Confidence 222222 222222222222211111111111110 011111 111222333323 233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 627 NGFRNLGNMEAALDMHRKMINDG-IP---CDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKG 684 (850)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 684 (850)
-.+.+.|..++|.+++.-..+.+ -. |...+..-+++.-....+...|..+++-|...+
T Consensus 530 ~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 530 ILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 55667777777777777665442 12 222333344455556667777777777776543
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.3e-14 Score=138.05 Aligned_cols=220 Identities=13% Similarity=0.140 Sum_probs=177.8
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHH
Q 043440 524 FVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESA 603 (850)
Q Consensus 524 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 603 (850)
+.-.|+.-.|..-|+..++.... +...|..+..+|....+.++..+.|++....++. ++.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 44578889999999999887533 3333777788899999999999999999987654 677777777778888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 604 CKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK 683 (850)
Q Consensus 604 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 683 (850)
..-|++.++..+. +...|..+.-+..+.++++++...|++.+++ +|..+..|+.....+..++++++|.+.|+.+++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999987544 6777777877788999999999999999987 4777889999999999999999999999999873
Q ss_pred CCCCC-------H--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 684 GIEPD-------I--ITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 684 g~~~~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.|+ . .+.-+++-.- -.+++..|.+++++..+. .| ...+|.+|+..-.+.|+.++|+++|++...
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 343 1 1222222222 348999999999999984 45 556799999999999999999999999764
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=5.6e-10 Score=113.38 Aligned_cols=636 Identities=12% Similarity=0.116 Sum_probs=386.0
Q ss_pred cHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHH--HHhhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043440 39 SLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLI--ETAKRFDFDLDSGVFSYLLRSYVRADRINDAV 116 (850)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (850)
|+.+|..++..-..+. .++...+.++++..-|. +-.++-.-+ +...--+..+....|-.+-+++ +.++
T Consensus 26 svk~W~RYIe~k~~sp--~k~~~~lYERal~~lp~--sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~------er~l 95 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAGSP--DKQRNLLYERALKELPG--SYKIWYDYLKARRAQVKHLCPTDPAYESVNNCF------ERCL 95 (835)
T ss_pred hHHHHHHHHHHHccCC--hHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHhhccCCCChHHHHHHHHH------HHHH
Confidence 3444444444333322 45555666666654322 223333332 1111113344444555544433 2333
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043440 117 DCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLK-GLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKAL 195 (850)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (850)
....+|. ++|-.-+..+.++|++-.-...|+..+.. .+.-....|...+...-..+-++-+..++++.++.
T Consensus 96 v~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 96 VFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 3333432 24455566677888888888888877644 23345567888888888888899999999998875
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC------CCCh-hHHHHHHHHHhcCCHH---HHHHHHHHHHhCC
Q 043440 196 GVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGR------VPSR-VYTNLIGACVKHGNLT---EAFRLKDEMMSCG 265 (850)
Q Consensus 196 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~-~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~ 265 (850)
++..-...+..++..+++++|.+.+..++.... ..+. .|..+-....+.-+.- ....++..++..-
T Consensus 168 ----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 ----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred ----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 555577778888899999999999988765421 1222 6666666665554322 2233444444321
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHhhHH
Q 043440 266 KPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMK-HMGIKPSVFIVN 344 (850)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 344 (850)
...-...|++|.+-|.+.|.+++|..+|++.... .-...-|..+.++|+.-....-+..+= ... +.+-..+..
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~--- 317 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV--- 317 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh---
Confidence 1112357889999999999999999999887663 234445666666665432211111111 000 111111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHH------------HHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----
Q 043440 345 SLLCGFLKAQLLEEAYKLFDE------------AVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPS---- 408 (850)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 408 (850)
+++-....|+. ++..+|.++..|..-+..+ .|+..+-+..|.+++.. +.|.
T Consensus 318 ----------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~G 384 (835)
T KOG2047|consen 318 ----------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVG 384 (835)
T ss_pred ----------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCC
Confidence 12222222333 3344556677777666554 57778888888888764 3332
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 043440 409 --VVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPN---VVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSN 483 (850)
Q Consensus 409 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 483 (850)
...|..+...|-..|+++.|..+|++..+...+.- ..+|..-...=.+..+++.|+++.+..... |....
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-- 459 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-- 459 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh--
Confidence 23677888888899999999999999887643311 234555555556677788888877776543 32211
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 043440 484 IIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKN 563 (850)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 563 (850)
..+...+..-.+. + ..+...|...++.--..|-++....+|+++++..+. ++.........+-...
T Consensus 460 ---~~~yd~~~pvQ~r--l--------hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 460 ---LEYYDNSEPVQAR--L--------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred ---hhhhcCCCcHHHH--H--------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 1222333321111 1 124556777777777888999999999999887643 3333233333444556
Q ss_pred CHHHHHHHHHHHHHcCCCcCH-hhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHH
Q 043440 564 EIDLALKMRNEMMNEGLQLDA-TAYGSLINGFCR---RRDMESACKLFAELLEVGLSPNTVVYNSMI--NGFRNLGNMEA 637 (850)
Q Consensus 564 ~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~ 637 (850)
-++++.+++++-+..-..|++ ..|++.+.-+.+ ...++.|..+|++.++ |.+|...-+.-|+ ..-...|-...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 688899988887765434443 467776655543 3478999999999998 6666543222222 22245688899
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHH
Q 043440 638 ALDMHRKMINDGIPCD--LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIIT---YTVLINGLYGKGQLENARKIF 712 (850)
Q Consensus 638 A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~ 712 (850)
|+++|+++... +++. ...|+..|.--...=-+..-..+|+++++. -|+..+ .--....-++.|.++.|..++
T Consensus 605 amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 605 AMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 99999998765 2332 356777776555444455667888998884 455543 333445567889999999999
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHhcCC
Q 043440 713 DEMNRKCLTP--NVFIFNTLIAGYFKEGN 739 (850)
Q Consensus 713 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 739 (850)
.--.+. ..| +...|.+.=.-=.++|+
T Consensus 682 a~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 682 AHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred Hhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 877664 344 77889999888899999
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.4e-12 Score=123.74 Aligned_cols=447 Identities=16% Similarity=0.208 Sum_probs=263.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHH-HHHHHHHHHCCCCCCHhhHHH
Q 043440 269 NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEG--CCTNGKVEKG-YELYTQMKHMGIKPSVFIVNS 345 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~ 345 (850)
.+.+-|.|+.. ...|.++++.-++++|...|.+-+...-..|.+. |....+.--| .+.|-.|...|- .+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--
Confidence 34455666554 3567788888888888887776666555555442 3333332211 233344444442 223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNM 425 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 425 (850)
+.|++.+ -+|+.. |....++..||.++|+--..+.|.+++++......+.+..++|.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred ------ccccHHH--HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 3343332 333332 346677888888888888888888888888777667777888888765432
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhH-HHH
Q 043440 426 DEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERA----FDVLDQMENAKISPTDYTSNIIINGLCKAGRTSV-AWD 500 (850)
Q Consensus 426 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~ 500 (850)
....++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 22367778888877888888888888888888876654 5667777788888888888888887777666533 444
Q ss_pred HHHHHHH----CCCCC----CHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHHcCCH
Q 043440 501 KLKKMVE----KGFIP----KCLTYNSIIDGFVKEDDMISALTVYREMHESG----LSPNV---VTYTILINGFCRKNEI 565 (850)
Q Consensus 501 ~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~ 565 (850)
++.+... +.++| |...|...++.|....+.+-|.++..-+.... +.|+. .-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 22222 23445566666767777777776665543321 22221 2244556666677777
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 566 DLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKM 645 (850)
Q Consensus 566 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (850)
+.-...|+.|+-.-+-|+..+...++.+....+.++-..+++..++..|.. ++..+ -.++...+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~~l-----------~eeil~~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT-----FRSDL-----------REEILMLL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh-----hhHHH-----------HHHHHHHH
Confidence 777777777776556666667667777777777777777777766665422 11111 12223333
Q ss_pred HHCCCCCCH---HHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-
Q 043440 646 INDGIPCDL---QTYTTLIAGLLEEGKLLTAS-NLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCL- 720 (850)
Q Consensus 646 ~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 720 (850)
.+....|+. .-+.....-|+ -++.++. ..-.+|.+.. -.....+..+-.+.+.|+.++|.++|..+.+.+-
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 333222221 12222222221 1122221 2223344433 3444566666678899999999999999865432
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 721 TPNVFIFN---TLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 721 ~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
-|-....+ -+.+.-........|+..++-|...+.
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23333344 445555677888889988888876554
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=7.7e-12 Score=121.81 Aligned_cols=330 Identities=12% Similarity=0.085 Sum_probs=165.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHH
Q 043440 337 KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV--SYNN 414 (850)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 414 (850)
..|...+-.....+.+.|..+.|+..|...+...|-+-.+|..|..... +.+. ....... ...|.. .=-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~----~~~l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEI----LSILVVG-LPSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHH----HHHHHhc-CcccchHHHHHH
Confidence 3444444444445556677777777777777665555555555443322 1111 1111111 111111 1112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHc
Q 043440 415 MILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKI--SPTDYTSNIIINGLCKA 492 (850)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 492 (850)
+..++......+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+.+. -.|..+|..++.. ++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hh
Confidence 2344445556666666666666666665555555555556666677777777777766531 1123344333322 11
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043440 493 GRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMR 572 (850)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 572 (850)
.+-. +..+.+-.-.=.+-.+.|...+.+-|.-.++.++|+..|++.++.+ |.....|+.+.+-|....+...|++.+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1111 1111111000001112333444455555555566666666655554 444455555555555555555666666
Q ss_pred HHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043440 573 NEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPC 652 (850)
Q Consensus 573 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 652 (850)
+.+++.++ .|-..|-.|..+|.-.+...-|+-.|++.....+. |...|.+|+.+|.+.++.++|+..|+.+...| ..
T Consensus 388 RrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 55555432 25555555666666555555566666555554322 45556666666666666666666666555554 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 653 DLQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
+...+..|.+.|.+.++.++|...|++.++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555556666666666666555555444
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.2e-12 Score=123.01 Aligned_cols=363 Identities=12% Similarity=0.099 Sum_probs=256.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HhHHH
Q 043440 372 ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNV--VTYSV 449 (850)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 449 (850)
.|...+...+..+.+.|..+.|+..|...+..- +-.-..|..|.... .+.+ ........ .+.|. ..--.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e----~~~~l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIE----ILSILVVG-LPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHH----HHHHHHhc-CcccchHHHHHH
Confidence 577777778888889999999999999888641 11223343333322 2222 22222222 22221 11123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcC
Q 043440 450 LIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFI--PKCLTYNSIIDGFVKE 527 (850)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 527 (850)
+..++......++++.-.+.....|++.+...-+....+.....+++.|+.+|++..+.++- .|..+|+.++-. +.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hh
Confidence 44556666688888888888888887777666666666777888999999999999887432 256677766533 32
Q ss_pred CChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHH
Q 043440 528 DDMISALTVYRE-MHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKL 606 (850)
Q Consensus 528 ~~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 606 (850)
.+- .+..+.+ ....+ +--+.|...+.+-|+-.++.++|...|+..++.++. ...+|+.+..-|....+...|++.
T Consensus 311 ~~s--kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 DKS--KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhH--HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 221 1222221 11111 344567777888888888999999999998887544 667888888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 607 FAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIE 686 (850)
Q Consensus 607 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 686 (850)
++..++.++. |-..|-.|+++|.-.+.+.=|+-.|+++.... |.|...|.+|+.+|.+.++.++|+..|..++..| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 9999887644 88889999999999999999999999988875 7788899999999999999999999999988865 3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 687 PDIITYTVLINGLYGKGQLENARKIFDEMNRK----C-LTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 687 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.+...+..|.+.|-+.++.++|...|++-++. | +.| ...+..-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 45678888889999999999999888887652 2 222 122233356667788888888777666654
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.6e-12 Score=128.50 Aligned_cols=508 Identities=12% Similarity=0.048 Sum_probs=243.9
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043440 200 DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKG 279 (850)
Q Consensus 200 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 279 (850)
+..-+..+.+-+..+.++.-|.-+-+++...+..|. --..+++++.-.|+++.|..+...-.- ...|..+.......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~-d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA-DIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH-HHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHH
Confidence 455566777766677788888888888877653333 445678888888999988887765422 23577888888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043440 280 YYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEA 359 (850)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (850)
+.+..++++|..++.+.. +.-+...|..--. ...=..+.+. ++.. .......+-.-...|......++|
T Consensus 92 l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHH
Confidence 889999999988887441 1112222211000 0000011111 0000 011111111122445566778888
Q ss_pred HHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHH-HhcCCHHHHHHHHHH
Q 043440 360 YKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGV----RPSVVSYNNMILAH-CTVKNMDEAYSVFSE 434 (850)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 434 (850)
...|.+++..++.+-..+..++....-. +.+.|+.+..... .-+......+.... ++..+ +.....-++
T Consensus 161 r~~Y~~Al~~D~~c~Ea~~~lvs~~mlt-----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~ 234 (611)
T KOG1173|consen 161 RDKYKEALLADAKCFEAFEKLVSAHMLT-----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNED 234 (611)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhcc-----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCch
Confidence 8888888876554444444444443321 1112222221100 00111111111111 00000 000000000
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 043440 435 MLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKC 514 (850)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 514 (850)
..-.+..-+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++++
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~------- 306 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD------- 306 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH-------
Confidence 0000112233333344444455555555555555555443 33333333333444444444444444444444
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHH
Q 043440 515 LTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGF 594 (850)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 594 (850)
.- |....+|.++.--|...|++.+|.+.|.+....+.. =...|-.+...|
T Consensus 307 ----------------------------~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsf 356 (611)
T KOG1173|consen 307 ----------------------------LY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSF 356 (611)
T ss_pred ----------------------------hC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHh
Confidence 32 344444555544444445555555555544432111 123444555555
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 595 CRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTAS 674 (850)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 674 (850)
+-.|..|+|+..+....+.-.. ...-+--+..-|.+.++.+.|.++|.++.... |.|+..++-+.-.....+.+.+|.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHH
Confidence 5555555555555444432110 11111112223555555555555555555543 445555555555555555555555
Q ss_pred HHHHHHHHC--CCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 675 NLYSEMLSK--GIE----PDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 675 ~~~~~~~~~--g~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (850)
.+|+..+.. ... --..+++.|.++|.+.+++++|+..+++.+... +.+..++.+++-+|...|+++.|++.|.
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 555555421 000 122345666666666666666666666666542 2256666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHhhhh
Q 043440 749 EMLDKGLVPDDTTYDILVNGKS 770 (850)
Q Consensus 749 ~~~~~g~~p~~~~~~~l~~~~~ 770 (850)
+.+- +.||..+...++..+.
T Consensus 514 KaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 514 KALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHh--cCCccHHHHHHHHHHH
Confidence 6653 4556555555554433
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.9e-13 Score=130.22 Aligned_cols=219 Identities=15% Similarity=0.156 Sum_probs=101.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043440 492 AGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKM 571 (850)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 571 (850)
.|+...|...|+..++....++. .|--+..+|....+.++....|++..+.+ +.|..+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 44555555555555544322211 13344444555555555555555555443 33444444444444444555555555
Q ss_pred HHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 572 RNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIP 651 (850)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (850)
|++.+...+. +...|-.+..+..+.++++++...|++.++. ++.-+..|+.....+...++++.|.+.|+..++..-.
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 5555543221 3334444444444455555555555555543 2223445555555555555555555555555543100
Q ss_pred -----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 652 -----CDLQTY--TTLIAGLLEEGKLLTASNLYSEMLSKGIEP-DIITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 652 -----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
.+...+ -.++- +.-.+++..|.++++++++. .| ....|..|...-.+.|++++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 011111 11111 11225566666666666552 23 233555565556666666666666665543
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-10 Score=119.31 Aligned_cols=410 Identities=16% Similarity=0.081 Sum_probs=253.2
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 043440 336 IKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNM 415 (850)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 415 (850)
+.-|...|..|.-+....|+++.+.+.|++....-......|+.+...|...|.-..|+.+++.-......|+..+--.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 44567777777777888888888888888887766667778888888888888888888888877665434544443334
Q ss_pred HHH-HH-hcCCHHHHHHHHHHHHhC--CCC--CCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCC
Q 043440 416 ILA-HC-TVKNMDEAYSVFSEMLEK--RVT--PNVVTYSVLIDGYFKQ-----------GDAERAFDVLDQMENAKISPT 478 (850)
Q Consensus 416 ~~~-~~-~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~ 478 (850)
+.. |. +.+..++++.+-.+++.. +.. .....|..+.-+|... ....++++.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 433 22 446677777776666652 111 1223344444333321 12456677777777665 233
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043440 479 DYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILING 558 (850)
Q Consensus 479 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (850)
+...-.+.--|+..++.+.|.+..++.++.+...+...|..+.-.+...+++.+|+.+.+.....- +.|......-++.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 333333444566778888888888888887666678888888888888888888888887765541 1111111111222
Q ss_pred HHHcCCHHHHHHHHHHHHHc---------------------C-------CCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043440 559 FCRKNEIDLALKMRNEMMNE---------------------G-------LQLDATAYGSLINGFCRRRDMESACKLFAEL 610 (850)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 610 (850)
-...++.++++.....++.. | ......++..+..-... +.+.+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-c
Confidence 22245555555444443211 0 00001111111111000 0000000000 0
Q ss_pred HHcC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 611 LEVG--LSPN------TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 611 ~~~~--~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
...- ..|+ ...|......+.+.++.++|...+.+..... +.....|...+..+...|.+++|.+.|..++.
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0000 1122 2345566677788888888888777777664 55667777777788888888899888888887
Q ss_pred CCCCCCH-HHHHHHHHHHHhCCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 683 KGIEPDI-ITYTVLINGLYGKGQLENARK--IFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 683 ~g~~~~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
+.|+. .+..++..++.+.|+..-|.+ ++..+.+.+. .+...|..++..+.+.|+.++|.+.|+...+..
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 45654 477888888888888776666 8888888542 278888899999999999999988888887643
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-11 Score=123.58 Aligned_cols=510 Identities=13% Similarity=0.065 Sum_probs=282.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043440 94 LDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMM 173 (850)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (850)
.+..-+..+.+-+..+.++.-|+-+-+++...+..|+ ...-+++++.-.|.++.|..+...-.-. ..|..+.....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 3445566667777778888888888888776664444 4455888898899999988887754322 23778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHH
Q 043440 174 RACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLT 252 (850)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 252 (850)
.++.+..++++|..++..... ..++..|...=. ...-..+.+.+... ..-.. .+..-+.+|....+.+
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~~~~~------~~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAGEDLM------INLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccccccc------ccchhceeeeeeehhhhhccHH
Confidence 889999999999988874311 111111110000 00001111111110 11111 3333445566666677
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHH
Q 043440 253 EAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKED-GLSPNKVTFAVLIEGC-CTNGKVEKGYELYTQ 330 (850)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 330 (850)
+|...+.+.+..++. +-..+-.++....-. ..+-..+|+..--. -..-+......+.... ++.-+ +.....-..
T Consensus 159 ~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~ 234 (611)
T KOG1173|consen 159 EARDKYKEALLADAK-CFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNED 234 (611)
T ss_pred HHHHHHHHHHhcchh-hHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCch
Confidence 777777666553211 111222222221110 11112222210000 0111122222222111 01100 001000010
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043440 331 MKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV 410 (850)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 410 (850)
..-.+...+........+-+...+++.+..++++...+..|.+...+..-|..+...|+..+-..+=.++++.-+ -...
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~ 313 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKAL 313 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCc
Confidence 111123345555566666666777777777777777777776666666666677777776666666666666522 2455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 043440 411 SYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLC 490 (850)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 490 (850)
+|-.+.-.|...|+..+|.+.|.+...-... =...|..+...|.-.|..++|+..+...-+.- +-....+--+.--|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHH
Confidence 7777776666667777777777766543211 23456677777777777777777766655431 111122223344556
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHHcCC
Q 043440 491 KAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHES----G--LSPNVVTYTILINGFCRKNE 564 (850)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~ 564 (850)
+.++.+.|.+.|.++.... +.|+...+-+.-.....+.+.+|...|+..+.. + ...-..+++.|..+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 6777777777777776652 235566666666666667777777777765521 0 01134456777777888888
Q ss_pred HHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043440 565 IDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGF 629 (850)
Q Consensus 565 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 629 (850)
+++|+..+++.+.... .+..++.++.-.|...|+++.|++.|.+.+.. .|+..+-..++..+
T Consensus 471 ~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 8888888887777633 37777777777788888888888888777653 56655555555444
No 46
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.1e-11 Score=114.39 Aligned_cols=363 Identities=14% Similarity=0.178 Sum_probs=201.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 043440 380 LLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMI-LAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQG 458 (850)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (850)
|.......-.+++|++++.+.+.. .|.-...|.-+ -.|.+..-++-+.+++.-.++. ++.+....|..+....+.=
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhh
Confidence 333333344556666666665543 23333333333 2344556666666666666654 3334444554444444432
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHH
Q 043440 459 DAERAFDVLDQMENAKISPTDYTSNIIINGLCKA-----GRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISA 533 (850)
Q Consensus 459 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 533 (850)
+-..|..-...+.+.+-.. -..+.-+++. .+-+.|++++-.+.+. .|. .-..|+--|.+.++..+|
T Consensus 234 ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 234 NGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred ccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHH
Confidence 2233333333333322111 0112222332 3446677777666653 232 223455667888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCCHHHHHH
Q 043440 534 LTVYREMHESGLSPNVVTYTILINGFCRKN-------EIDLALKMRNEMMNEGLQLD-ATAYGSLINGFCRRRDMESACK 605 (850)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 605 (850)
..+..++. |.++.-|..-.-.+...| ...-|.+.|+..-+.+..-| ..--.++.+++.-..++++.+.
T Consensus 305 ~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 305 ISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 88877664 333333332222233333 34556666655544443333 2334566667777778899888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 606 LFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGI 685 (850)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 685 (850)
.++.+..--...|...+ .+..+++..|++.+|.++|-++....+..+..-...|..+|..+++++.|.+++-++ ..
T Consensus 381 YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t 456 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NT 456 (557)
T ss_pred HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CC
Confidence 88888775444344444 477889999999999999988776554444444456677888889888887665544 33
Q ss_pred CCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 043440 686 EPDIITYT-VLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDD-TTYD 763 (850)
Q Consensus 686 ~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~ 763 (850)
+.+..+.- .+...|.+++.+--|-+.|+.+.. ..|+++-|. |+-.....+|..+....-.|-+ .+.+
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~r 525 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMR 525 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHH
Confidence 33444433 345678889998888888888877 456666663 4444445566666543332322 2233
Q ss_pred HHHhhhhcCC
Q 043440 764 ILVNGKSRSD 773 (850)
Q Consensus 764 ~l~~~~~~~g 773 (850)
-++..+...+
T Consensus 526 EVvhllr~~~ 535 (557)
T KOG3785|consen 526 EVVHLLRMKP 535 (557)
T ss_pred HHHHHHHhCC
Confidence 3444444333
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=4.3e-09 Score=107.15 Aligned_cols=544 Identities=12% Similarity=0.125 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 043440 201 ARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMK 278 (850)
Q Consensus 201 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 278 (850)
+..|...+..+.++|++..-...|.+++..=+.... +|...+......|-++-+..++++.++. ++..-...|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 344555555555666666666666665554322222 5666666555666666666666666553 2223444555
Q ss_pred HHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCC--HhhHHHHH
Q 043440 279 GYYKQGDLSSALELLDKIKEDG------LSPNKVTFAVLIEGCCTNGKVEK---GYELYTQMKHMGIKPS--VFIVNSLL 347 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~l~ 347 (850)
.+++.+++++|.+.+...+... -+.+-..|..+-...++.-+.-. ...+++.++.. -+| ...|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 5566666666666665553210 11122234433333333322211 12222222221 122 23455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH--hCCCCCChhhHHHHHHHHHhcCCH
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMV--SSGVRPSVVSYNNMILAHCTVKNM 425 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~ 425 (850)
+.|.+.|.++.|..+|++.+..-. .+.-+..+.+.|.+-....-+..+ + +. +.+-.-+.. ++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~-tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~-------------dl 319 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVM-TVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDV-------------DL 319 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhe-ehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhh-------------hH
Confidence 555555555555555555544211 112222333333221111111000 0 00 000000111 12
Q ss_pred HHHHHHHHHHHhCC-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHH
Q 043440 426 DEAYSVFSEMLEKR-----------VTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISP------TDYTSNIIING 488 (850)
Q Consensus 426 ~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~ 488 (850)
+-...-|+.+.... -+.++..|..-+. +..|+..+-...|.+..+.- .| -...|..+...
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHH
Confidence 22233344333321 1224445544433 34677778888888876541 22 12357788888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC-----------C------CC
Q 043440 489 LCKAGRTSVAWDKLKKMVEKGFIPK---CLTYNSIIDGFVKEDDMISALTVYREMHESGL-----------S------PN 548 (850)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~------~~ 548 (850)
|-..|+++.|..+|++..+-.++-- ..+|..-..+-.+..+++.|+++.+.....-- + .+
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999999987644321 24566666666778889999998887654311 1 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 043440 549 VVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTV-VYNSMIN 627 (850)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 627 (850)
...|...++.--..|-++....+++.++...+. ++.........+-.+.-++++.+.+++-+..-..|+.. .|+..+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 345666666666778888889999999876544 44444444445566777889999998877664445543 5665554
Q ss_pred HHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 043440 628 GFRN---LGNMEAALDMHRKMINDGIPCDLQTYTTLI--AGLLEEGKLLTASNLYSEMLSKGIEPDI--ITYTVLINGLY 700 (850)
Q Consensus 628 ~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~l~~~~~ 700 (850)
-+.+ .-.++.|..+|+++++ |.||...-+.-|+ ..=.+.|....|+.+++++... +++.. ..|+..|.--.
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 4432 3458999999999999 6666543222222 2223568888999999997764 44432 36777776444
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHhhhhcCCc
Q 043440 701 GKGQLENARKIFDEMNRKCLTPNVFI---FNTLIAGYFKEGNLQEAFRLHNEMLD-KGLVPDDTTYDILVNGKSRSDT 774 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~ 774 (850)
..=-+..-..+|++.++. -|+..+ .-.....=.+.|..+.|..+|.-..+ ..+..+...|.+.-.-=.+.|+
T Consensus 634 e~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 333355567788888773 455444 33344566788999999999887765 3455566667776665566666
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.1e-13 Score=141.41 Aligned_cols=285 Identities=12% Similarity=0.032 Sum_probs=153.1
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043440 111 RINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGL--GVDSVTIRVMMRACLKEDTTEEAEKY 188 (850)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 188 (850)
+.++|+..|.+....-.. ..++...++.+|+..+++++|..+|+.+....+ .-+...|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 445666666663332222 335556666667777777777777766655532 1234445554432211 111121
Q ss_pred HH-HHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 189 FR-DAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKP 267 (850)
Q Consensus 189 ~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 267 (850)
+. .+.... +..+.+|..+.+.|.-+++.+.|++.|+++++.++...-+|+.+++-+.....+|.|...|+..+... +
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 11 122221 22555666666666666666666666666665332222266666666666666666666666665542 2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 043440 268 MNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLL 347 (850)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 347 (850)
.+-.+|.-++..|.|+++++.|+-.|++..+.++ .+.+....++..+-+.|+.++|+++++++...+. .|+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHH
Confidence 2444555566666666666666666666655322 1334444455555566666666666666655442 2333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG 404 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (850)
..+...+++++|+..++++.+.-|.+..++..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455555666666666666666555556666666666666666666666665555543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.3e-12 Score=138.06 Aligned_cols=289 Identities=13% Similarity=0.011 Sum_probs=132.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 043440 143 RRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACG 222 (850)
Q Consensus 143 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 222 (850)
..|+++.|.+.+.+..+..+. ....+........+.|+++.|...+.++.+..+.+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345555555555554443211 1222233334445555555555555555443222222222233444555555555555
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHH----HHHHHHHhcCChhHHHHHHHHHHH
Q 043440 223 LVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVAT----SLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
.++.+.+..|....++..++..+...|++++|.+.+..+.+.+..+ ...+. .....+...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555443333355555555555555555555555555543321 11111 011111222222222333333333
Q ss_pred cCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 299 DGLS---PNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFI---VNSLLCGFLKAQLLEEAYKLFDEAVDSGIA 372 (850)
Q Consensus 299 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 372 (850)
..+. .+...+..++..+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+..|.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 2111 244555555555555666666666665555532 22211 011111122334555555555555555554
Q ss_pred CH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 373 NV--FTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEM 435 (850)
Q Consensus 373 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (850)
|+ ....+++..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54 5555555555556666666665553222222445555555555555555555555555543
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=2.2e-12 Score=135.57 Aligned_cols=285 Identities=12% Similarity=0.049 Sum_probs=153.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 043440 144 RNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGL 223 (850)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 223 (850)
.|+++.|.+.+....+....| ...+........+.|+++.|...+.++.+..+.+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 466666665555544432111 1122222333356666666666666665543222112212224455566666666666
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 224 VKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNL-------VVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
++++.+..+....++..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 66666655444446666666666666666666666666654433211 11222222222333334444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhH
Q 043440 297 KEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFT 376 (850)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (850)
.+. .+.++.....+...+...|+.++|.++++...+. ++|... .++.+.+..++.+++++..+...+..|.|+..
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l 330 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLL 330 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHH
Confidence 322 2335555666666666666666666666666653 233311 12233334466666666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 377 YNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEML 436 (850)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (850)
+..+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666666666654 4566666666666666666666666666554
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.3e-11 Score=112.39 Aligned_cols=275 Identities=12% Similarity=0.095 Sum_probs=168.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHH
Q 043440 176 CLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAF 255 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 255 (850)
+....++..|..+++.....+-.....+-..+...+.+.|++++|...+.-+....-.|...+..|+-++.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 34455666666666655543322222334445667778888888888888877754444447777888888888888888
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043440 256 RLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (850)
.+-....+ ++-.-..+...--+.|+-++-..+.+.+... . .--.+|.+.....-.+.+|+++|.+.+..+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--L---EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--H---HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87766532 3333334445555667766666655555331 1 122234444444456788888888887642
Q ss_pred CCCCHhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 043440 336 IKPSVFIVNS-LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNN 414 (850)
Q Consensus 336 ~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 414 (850)
|.-...|. +.-+|.+..-++-+.+++.-.++..|.++.+.|..+.-..+.=+-..|.+-.+++.+.+-. .| .
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~ 254 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY-P 254 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-h
Confidence 44333333 3456678888888888888888888888888888777776654444555555565554221 11 1
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 415 MILAHCTV-----KNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQME 471 (850)
Q Consensus 415 l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (850)
.+.-.++. .+-+.|++++-.+.+. -+..-..|+-.|.+++++.+|..+.+++.
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 22222322 3446677777666654 23344456667788888888888776653
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.5e-12 Score=137.71 Aligned_cols=292 Identities=13% Similarity=0.076 Sum_probs=135.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHH
Q 043440 177 LKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAF 255 (850)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 255 (850)
...|+++.|.+.+.+..+..+. ....+-....+..+.|+++.|.+++.++.+..+.+.. +.......+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4455566665555555443221 1222233344444555555555555555543333332 3333355555555555555
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHC
Q 043440 256 RLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAV-LIEGCCTNGKVEKGYELYTQMKHM 334 (850)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 334 (850)
..++.+.+..+ .+..++..+...+.+.|++++|.+.+..+.+.+.. +...+.. ...++
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 55555555432 24444555555555555555555555555544322 1111110 00000
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043440 335 GIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI----ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV 410 (850)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 410 (850)
......+..+++.+.+..+.+..| .+...+..++..+...|+.++|.+.+++..+.. ||..
T Consensus 233 -------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~ 297 (409)
T TIGR00540 233 -------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDR 297 (409)
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcc
Confidence 011111112222223333333332 355555556666666666666666666665542 2222
Q ss_pred h--H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 043440 411 S--Y-NNMILAHCTVKNMDEAYSVFSEMLEKRVTPNV--VTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNII 485 (850)
Q Consensus 411 ~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 485 (850)
. + ..........++.+.+.+.++...+. .+-|. ....++...+.+.|++++|.+.|+........|+...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1 0 11111122335555566666665554 22233 44455666666666666666666643332234555555566
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 043440 486 INGLCKAGRTSVAWDKLKKMV 506 (850)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~ 506 (850)
...+.+.|+.++|.+++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666543
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.6e-13 Score=140.09 Aligned_cols=289 Identities=15% Similarity=0.113 Sum_probs=206.6
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhcCCChHHHHH-
Q 043440 459 DAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGF--IPKCLTYNSIIDGFVKEDDMISALT- 535 (850)
Q Consensus 459 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~- 535 (850)
+..+|+..|..+..+ +.........+..+|...+++++|.++|+.+.+..+ .-+..+|.+.+--.- + +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 345666666664433 222334555566666666777777777766665421 113445554442221 1 11222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043440 536 VYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGL 615 (850)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 615 (850)
+-+.+++.. +..+.+|..+.++|.-+++++.|++.|++.+..+.. ...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 223334433 667888999999999999999999999998875322 678888888888888899999999988876532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043440 616 SPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVL 695 (850)
Q Consensus 616 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 695 (850)
. +--.|..++..|.+.++++.|.-.|+++++.+ |.+.+....+...+.+.|+.++|+++++++.... +.|+..-...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 44466667888999999999999999999887 7788888888888999999999999999998753 2344444555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043440 696 INGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDD 759 (850)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 759 (850)
+..+...+++++|+..++++.+ +.| +..+|..++..|.+.|+.+.|+.-|--|.+..+++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6677788999999999999988 445 5667888889999999999999999888887666554
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=1.8e-12 Score=136.16 Aligned_cols=290 Identities=12% Similarity=0.083 Sum_probs=137.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHH
Q 043440 178 KEDTTEEAEKYFRDAKALGVKLDARA-YRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAF 255 (850)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 255 (850)
..|+++.|++.+....+.. +++.. |.....+..+.|+++.|..++.++.+..+.+.. ........+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 3577777776666544432 12222 222233435666666666666666654333332 2223355666666666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043440 256 RLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (850)
..++++.+..+ .++.....+...|.+.|++++|.+++..+.+.+..++ .....+-.
T Consensus 174 ~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~---------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQ---------------------- 229 (398)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHH----------------------
Confidence 66666666542 2555666666666666666666666666665433211 11110000
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 043440 336 IKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNM 415 (850)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 415 (850)
.+|..++.......+.+...++++...+..+.++.....++..+...|+.++|.+.+++..+. .|+... .+
T Consensus 230 -----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~ 300 (398)
T PRK10747 230 -----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VL 300 (398)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HH
Confidence 011111111111122223333333333322334445555555555555555555555555442 222211 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh
Q 043440 416 ILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRT 495 (850)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 495 (850)
+.+....++.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 222223355555555555555442 224444555555555555555555555555543 34444545555555555555
Q ss_pred hHHHHHHHHH
Q 043440 496 SVAWDKLKKM 505 (850)
Q Consensus 496 ~~A~~~~~~~ 505 (850)
++|.+.+++.
T Consensus 378 ~~A~~~~~~~ 387 (398)
T PRK10747 378 EEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.3e-15 Score=151.13 Aligned_cols=262 Identities=19% Similarity=0.193 Sum_probs=99.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 043440 484 IIINGLCKAGRTSVAWDKLKKMVEKG-FIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRK 562 (850)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 562 (850)
.+...+.+.|++++|++++++..... ...+...|..+...+...++++.|...|+++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34556667777777777775544433 22234445555566667778888888888887765 3355556666665 577
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043440 563 NEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVG-LSPNTVVYNSMINGFRNLGNMEAALDM 641 (850)
Q Consensus 563 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 641 (850)
+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888877766542 455666777777888888888888888876432 234667777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043440 642 HRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLT 721 (850)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 721 (850)
|+++++.. |.|......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888875 5567778888888888888888777777776642 4455667778888888888888888888887742 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 722 PNVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 722 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.|+.+...++.++...|+.++|.++++++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3677777888888888888888888777643
No 56
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=8.5e-10 Score=117.67 Aligned_cols=645 Identities=13% Similarity=0.049 Sum_probs=367.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 043440 96 SGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLG-VDSVTIRVMMR 174 (850)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~ 174 (850)
..+|..|+..|..--+...|.++|+++.+.+.. +..........|.+...++.|....-..-+..+. .-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 346888888888877888899999988877655 5556677788888888888888874433333211 11223334444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHH
Q 043440 175 ACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEA 254 (850)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 254 (850)
.+.+.++...|...|+......+. |...|..++.+|..+|++..|.++|.++....|.............+..|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 567888888888888888877654 7788888999999999999999999888774333222555566667888889888
Q ss_pred HHHHHHHHhC------CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCCh
Q 043440 255 FRLKDEMMSC------GKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE-------DGLSPNKVTFAVLIEGCCTNGKV 321 (850)
Q Consensus 255 ~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~ 321 (850)
+..++..... +...-..++..+...+...|-..+|...|++-.+ .....+...|..+..+|
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac------ 723 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC------ 723 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH------
Confidence 8888776542 1111122333333334444444445555444322 11112233333332222
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCHhHHHHHHHHHHh--------c
Q 043440 322 EKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLL---E---EAYKLFDEAVDSGIANVFTYNDLLAWLCK--------R 387 (850)
Q Consensus 322 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~ 387 (850)
.+|.+.. .+ .|+......+..-.-..+.. + -|.+.+-.-++.- .+...|..++..|.+ .
T Consensus 724 ----~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 724 ----YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred ----HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcc
Confidence 2222222 11 12222111111111111111 1 1111111111110 234556666655544 1
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043440 388 GKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVL 467 (850)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (850)
.+...|+..+.+.++..- -+..+|+.|.-. ...|++.-|.--|-+.... .+....+|..+.-.+.+..+++.|...|
T Consensus 797 ~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred hhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHH
Confidence 223467788887776522 255567666554 5556776666666555443 2346677888888888888899999998
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH-
Q 043440 468 DQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMV----EKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHE- 542 (850)
Q Consensus 468 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 542 (850)
...+... +.+...|..........|+.-++..+|..-- ..|-.++..-|..........|+.++-+...+.+..
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 8887764 4456666665555566777777777776622 123334444444444444556665554444443322
Q ss_pred --------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcCHhhHH----HHHHHHHccCCHHHHHHHHHH
Q 043440 543 --------SGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNE-GLQLDATAYG----SLINGFCRRRDMESACKLFAE 609 (850)
Q Consensus 543 --------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~ 609 (850)
.+.+.+...|...+...-..+.+..|.++..+.+.- ....+...|+ .+...++..|.++.|..-+..
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~ 1032 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWK 1032 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcc
Confidence 133556677777777777777777777777665420 0112344444 344567778888877655543
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043440 610 LLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND-GIPCDL-QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEP 687 (850)
Q Consensus 610 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 687 (850)
.... .+..+...-+ +..-.|+++++++.|+++... +...+. +....++.+....+.-+.|...+-+.... -+|
T Consensus 1033 ~~~e---vdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~ 1107 (1238)
T KOG1127|consen 1033 EWME---VDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKV 1107 (1238)
T ss_pred cchh---HHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-Ccc
Confidence 3211 1111111111 114478899999999998865 223343 34455555666778888888887777764 356
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043440 688 DIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIF---NTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDI 764 (850)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 764 (850)
+..+.-.|...+.-..+-.....+.+++.+. +......| ..+=..|.+.|+-.-..+.+++..-..|. |+..|..
T Consensus 1108 ~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~-~~~~Wsl 1185 (1238)
T KOG1127|consen 1108 QASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPG-DPALWSL 1185 (1238)
T ss_pred chhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCC-ChHHHHH
Confidence 6666655555554444433334444444332 11111111 11223567889988889999998875543 5666665
Q ss_pred HH
Q 043440 765 LV 766 (850)
Q Consensus 765 l~ 766 (850)
|-
T Consensus 1186 L~ 1187 (1238)
T KOG1127|consen 1186 LS 1187 (1238)
T ss_pred HH
Confidence 54
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.2e-15 Score=149.26 Aligned_cols=260 Identities=15% Similarity=0.137 Sum_probs=87.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCC-CCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 043440 206 MVIQALCRKPNLKVACGLVKEMRDMG-RVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ 283 (850)
Q Consensus 206 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 283 (850)
.+...+.+.|++++|++++.+..... +..+. .|..++......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555666667777777665444332 12222 5555666666667777777777777665433 44455555555 566
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043440 284 GDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG-IKPSVFIVNSLLCGFLKAQLLEEAYKL 362 (850)
Q Consensus 284 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (850)
+++++|.+++.+..+. .++...+..++..+.+.++++++..+++.+.... .+.+...+..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776665543 2444556666666777777777777777665422 234556666666777777777777777
Q ss_pred HHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043440 363 FDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTP 442 (850)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 442 (850)
++++++..|.|..+.+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|...|++..+. .+.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence 777777777777777777777777777777666666665542 234455566666777777777777777776664 233
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 443 NVVTYSVLIDGYFKQGDAERAFDVLDQME 471 (850)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (850)
|+.+...+.+++.+.|+.++|.++..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666677777777777777777666554
No 58
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.60 E-value=5.3e-10 Score=119.17 Aligned_cols=581 Identities=13% Similarity=0.041 Sum_probs=356.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 043440 146 LIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVK 225 (850)
Q Consensus 146 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 225 (850)
+...|+..|-+....++. =...|..|+..|+...+...|..+|+.+.+.+.. +...+......|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 466677666666555322 3567888888888888899999999998877644 67778888999999999999998854
Q ss_pred HHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043440 226 EMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSP 303 (850)
Q Consensus 226 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (850)
..-+..+.-.. .|...+-.|...++...|+..|+..++..+. |...|..++.+|...|++..|+++|.+... ..|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 44333222111 4555666788889999999999999887543 888999999999999999999999999877 445
Q ss_pred CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-------C
Q 043440 304 NKV-TFAVLIEGCCTNGKVEKGYELYTQMKHM------GIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVD-------S 369 (850)
Q Consensus 304 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 369 (850)
+.. .-.......+..|.+.+|...++..... +...-..++..+...+...|-..+|...|++.++ .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 432 2222334566789999999988877542 1111233444444444444555555555555443 2
Q ss_pred C-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCC
Q 043440 370 G-IANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNM---D---EAYSVFSEMLEKRVTP 442 (850)
Q Consensus 370 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~ 442 (850)
. ..+...|-.+.+ |..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++ ...
T Consensus 708 ~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAI 773 (1238)
T ss_pred hhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhh
Confidence 2 123333333322 233333322 11 12222222221112222211 1 11122211111 112
Q ss_pred CHHhHHHHHHHHHh----c----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 043440 443 NVVTYSVLIDGYFK----Q----GDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKC 514 (850)
Q Consensus 443 ~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 514 (850)
+..+|..++..|.+ . .+...|+..+.+..+.. ..+..+|+.|.-. ...|++.-|...|-+.....+ ...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cch
Confidence 34455555544433 1 22346788888877654 4567778877655 666888888877777666533 356
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--H--HcCCCcCHhhHHHH
Q 043440 515 LTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEM--M--NEGLQLDATAYGSL 590 (850)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~~~~l 590 (850)
.+|..+.-.+.+..+++.|...|...+... |.|...|..........|+.-++..+|..- . ..|--++..-|..-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 788888888999999999999999998875 667777877766667788888888888762 2 23344555555555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH--
Q 043440 591 INGFCRRRDMESACKLFAELLEV---------GLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND-GIPCDLQTYT-- 658 (850)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~-- 658 (850)
......+|+.++-+...+.+... +.+.+...|...+....+.+.++.|.++..+.+.. ....+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 55566777766655544443321 33446677888777788888888888877775532 1123344444
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHH
Q 043440 659 --TLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKC-LTPN-VFIFNTLIAGY 734 (850)
Q Consensus 659 --~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~ 734 (850)
.....++..|.++.|..-+..... ..+..+-..-+. ..-.|+++++.+.|+++..-. -+.+ ++....++.+.
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~ 1085 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCM 1085 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHH
Confidence 334445566666655443322111 111111111111 145689999999999998631 1113 34466677777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 043440 735 FKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 735 ~~~g~~~~A~~~~~~~~~~ 753 (850)
...+..+.|...+-+....
T Consensus 1086 g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1086 GLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred hhcccchHHHHHHHHHHHh
Confidence 8888889998877777653
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=3.9e-11 Score=126.11 Aligned_cols=152 Identities=20% Similarity=0.106 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
Q 043440 622 YNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK--GIEPDIITYTVLINGL 699 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~l~~~~ 699 (850)
-+.++..+++.-+..+++..-++....-+ ...|..||+-+....+.+.|..+.++.... .+..|..-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 34455566666666666655444433211 156788888888888888888888877542 1223444567788888
Q ss_pred HhCCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCchHH
Q 043440 700 YGKGQLENARKIFDEMNRKC-LTPN-VFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWAR 777 (850)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 777 (850)
.+.+....+..+++++.+.- ..|+ ..+...+.+.....|+.+.-.++++-+...|+.- | .-++....+.++...
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e---t-gPl~~vhLrkdd~s~ 614 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE---T-GPLWMVHLRKDDQSA 614 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh---c-ccceEEEeeccchhh
Confidence 88888888888888887631 1222 3445566677777888888888877777777653 1 334555556666655
Q ss_pred hhc
Q 043440 778 KKE 780 (850)
Q Consensus 778 a~~ 780 (850)
+.+
T Consensus 615 a~e 617 (1088)
T KOG4318|consen 615 AQE 617 (1088)
T ss_pred hhh
Confidence 543
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=6.8e-12 Score=116.55 Aligned_cols=288 Identities=15% Similarity=0.125 Sum_probs=180.2
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhHHHH
Q 043440 215 PNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPM---NLVVATSLMKGYYKQGDLSSALE 291 (850)
Q Consensus 215 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 291 (850)
...++|..+|.+|.+.++..-.+...|++.|.+.|..+.|+++.+.+.+...-+ ...+...|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777766443333366677777777777777777777766531111 12234456666777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 292 LLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSV----FIVNSLLCGFLKAQLLEEAYKLFDEAV 367 (850)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (850)
+|..+.+.+ .--..+.-.|+..|-+..++++|++.-+++.+.+-.+.. ..|.-|...+....+.+.|+.++.++.
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777776542 223345666777777777777777777777765533321 233444445555677788888888888
Q ss_pred HCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 043440 368 DSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTY 447 (850)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 447 (850)
+.++..+.+--.+.+.+...|+++.|++.++...+.++.--..+...+..+|.+.|+.++....+..+.+.... ...-
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~~~~ 285 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--ADAE 285 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--ccHH
Confidence 88777777777788888888888888888888877644433446667777777888888888877777765333 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH---cCChhHHHHHHHHHHH
Q 043440 448 SVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCK---AGRTSVAWDKLKKMVE 507 (850)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 507 (850)
..+...-....-.+.|...+.+-..+ .|+...+..++..... .|...+.+..+++|+.
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33444433444445555555444443 5666666666665443 2345555556666554
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=5e-10 Score=114.24 Aligned_cols=463 Identities=17% Similarity=0.189 Sum_probs=270.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL 351 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (850)
.+..++..| ..+++...++..+.+++. .+--..|....+-.+...|+.++|....+..+..++. +.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 445555555 677888888888888774 2223445555556677788888888888887776543 6677877777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043440 352 KAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSV 431 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 431 (850)
...++++|++.|..++..++.|...|..+.-.-.+.++++.......+..+..+. ....|..+..++--.|++..|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999888888888888888888888888888887777765221 334677777777788888888888
Q ss_pred HHHHHhCC-CCCCHHhHHHHHHH------HHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHHcCChhHHHHHHH
Q 043440 432 FSEMLEKR-VTPNVVTYSVLIDG------YFKQGDAERAFDVLDQMENAKISPTDYT-SNIIINGLCKAGRTSVAWDKLK 503 (850)
Q Consensus 432 ~~~~~~~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~ 503 (850)
++...+.. -.|+...+...... ....|..++|.+.+...... ..|-.. -..-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 88887764 24565555544432 33566677777766555432 112222 2234556677788888888888
Q ss_pred HHHHCCCCCCHHHHHHHH-HHHhcCCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCC
Q 043440 504 KMVEKGFIPKCLTYNSII-DGFVKEDDMISAL-TVYREMHESGLSPNVVTYTIL-INGFCRKNEIDLALKMRNEMMNEGL 580 (850)
Q Consensus 504 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~ 580 (850)
.++.. .||...|.... .++.+-.+.-+++ .+|....+. .|-...-..+ ++...-..-.+..-..+..+.+.|+
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 88775 45555544444 3333333333333 555555443 2221111111 1111111223334445555566665
Q ss_pred CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--C------------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHH
Q 043440 581 QLDATAYGSLINGFCRRRDMESACKLFAELLEV--G------------LSPNTVVYN--SMINGFRNLGNMEAALDMHRK 644 (850)
Q Consensus 581 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------------~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 644 (850)
++ ++..+.+.|-.-...+--.++.-.+... | -+|....|. .++..|-+.|+++.|..+.+.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 43 3344444443322222111111111110 0 134444333 345556677777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 043440 645 MINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNV 724 (850)
Q Consensus 645 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 724 (850)
+++.. |.-+.-|..-...+...|++++|..++++..+.. .||...-.--+.-..++.++++|.++..+..+.|. +.
T Consensus 397 AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~ 472 (700)
T KOG1156|consen 397 AIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GA 472 (700)
T ss_pred HhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--ch
Confidence 76652 2223455555566667777777777777776643 34443333344444566777777777777766553 22
Q ss_pred HHHHHH----------HHHHHhcCCHHHHHHHHHHHH
Q 043440 725 FIFNTL----------IAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 725 ~~~~~l----------~~~~~~~g~~~~A~~~~~~~~ 751 (850)
.-+-+- +.+|.+.|++.+|++-|..+.
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 111111 245566666666666665554
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=4e-10 Score=117.31 Aligned_cols=441 Identities=15% Similarity=0.081 Sum_probs=242.9
Q ss_pred CCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043440 232 RVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAV 310 (850)
Q Consensus 232 ~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 310 (850)
...+. +|..|.-++...|+++.+.+.|++.+..-+ -....|+.+...|...|.-..|..+++.-......|+..+-..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44445 777777778888888888888888765322 2456788888888888888888888877765432343333333
Q ss_pred HH-HHHH-hcCChhHHHHHHHHHHHC--CCC--CCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 043440 311 LI-EGCC-TNGKVEKGYELYTQMKHM--GIK--PSVFIVNSLLCGFLKA-----------QLLEEAYKLFDEAVDSGIAN 373 (850)
Q Consensus 311 l~-~~~~-~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 373 (850)
++ ..|. +.+.+++++.+-.+++.. +.. .....|..+.-+|... ....++++.++++.+.++.|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33 2333 446777777776666652 111 1233344444444321 12456677777777777766
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043440 374 VFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDG 453 (850)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (850)
+.+...+.--|...++.+.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+..... .+.|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhh
Confidence 66666666777777788888888887777755557777777777777777888888777776654 11122222222222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHh-cCCCh
Q 043440 454 YFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEK--GFIPKCLTYNSIIDGFV-KEDDM 530 (850)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~~~~ 530 (850)
-...++.++++.....+...- . +.... ...++-....+....+.-. .......++..+..-.. +....
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~w-e-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALW-E-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHH-H-hhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 333556666665555544310 0 00000 0000100011111111000 00001111111111000 00000
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 043440 531 ISALTVYREMHESGLSPNV-VTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAE 609 (850)
Q Consensus 531 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 609 (850)
..... +......|.. .+|.. ....|......+.+.++.++|...+.+
T Consensus 628 ~se~~----Lp~s~~~~~~~~~~~~----------------------------~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 628 GSELK----LPSSTVLPGPDSLWYL----------------------------LQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred ccccc----cCcccccCCCCchHHH----------------------------HHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 00000 0000000100 00000 023455556667777777777766666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCC
Q 043440 610 LLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASN--LYSEMLSKGIEP 687 (850)
Q Consensus 610 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~~ 687 (850)
..... .-....|...+..+...|+.++|.+.|......+ |.++.+.+++..++.+.|+..-|.. ++.++++.+ +.
T Consensus 676 a~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~ 752 (799)
T KOG4162|consen 676 ASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PL 752 (799)
T ss_pred HHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CC
Confidence 66542 2245566666666777777777777777777765 5566677777777777777666666 777777743 33
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 688 DIITYTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
+...|..+...+-+.|+.+.|.+.|....+.
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5667777777777778888777777777653
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.4e-11 Score=114.42 Aligned_cols=286 Identities=14% Similarity=0.187 Sum_probs=199.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCCH
Q 043440 283 QGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPS------VFIVNSLLCGFLKAQLL 356 (850)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~ 356 (850)
..+.++|..+|-+|.+.. +....+..+|.+.|.+.|..+.|+.++..+.+. || ......|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 466778888888877642 223445566777777888888888888777763 33 23344566778888889
Q ss_pred HHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHH
Q 043440 357 EEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV----SYNNMILAHCTVKNMDEAYSVF 432 (850)
Q Consensus 357 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 432 (850)
|.|..+|..+.+.+.--..+...|+..|-+..+|++|++.-+++.+.+.++..+ .|..+...+....+.+.|..++
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999988888766666778888999999999999999999888876554432 3445555555667888889999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 043440 433 SEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIP 512 (850)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 512 (850)
.+..+.+.. .+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+..+....+.++.+....+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 888876332 4445556777888899999999999988887654445677778888888888888888888888764333
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 043440 513 KCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRK---NEIDLALKMRNEMMN 577 (850)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 577 (850)
+ .-..+.+.-....-.+.|.....+-+.. +|+...+..+++..... |...+.+.++..|+.
T Consensus 283 ~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 D--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred c--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3 3333333333444456666666555555 78888888888765432 344555555555553
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=8.7e-10 Score=112.53 Aligned_cols=456 Identities=13% Similarity=0.088 Sum_probs=202.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHH
Q 043440 178 KEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRL 257 (850)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 257 (850)
..+++...+...+.+.+.. .....+.....-.++..|+-++|.......+..++...++|..++-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3444445555444444421 112233333333344445555555555555554444444555555555555555555555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-C
Q 043440 258 KDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG-I 336 (850)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 336 (850)
+..+++.+.. |...|.-+.-.-.+.++++.....-.+..+. .+.....|..++.++.-.|++..|..+.+...+.- -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555554322 4445544444444555555555544444442 11223344555555555555555555555554432 1
Q ss_pred CCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 043440 337 KPSVFIVNSLL------CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV 410 (850)
Q Consensus 337 ~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 410 (850)
.|+...+.... ....+.|.+++|.+.+..-...-......-..-...+.+.+++++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 23332222111 22234455555555544433222223333344455555666666666666666554 34444
Q ss_pred hHHHHHH-HHHhcCCHHHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043440 411 SYNNMIL-AHCTVKNMDEAY-SVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIING 488 (850)
Q Consensus 411 ~~~~l~~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 488 (850)
.|...+. ++.+..+.-++. .+|....+. .+........=++......-.+..-.++....+.|+++ ++..+...
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SL 329 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHH
Confidence 4433332 222222222222 333333322 11000000000111111111222333444445555432 22222222
Q ss_pred HHHcCChhHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HH
Q 043440 489 LCKAGRTSVAWDKLKKMVE----KG----------FIPKCLT--YNSIIDGFVKEDDMISALTVYREMHESGLSPNV-VT 551 (850)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~ 551 (850)
|-.....+-..++.-.+.. .| -+|.... +-.++..|-..|+++.|....+..+.. .|+. ..
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEl 407 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIEL 407 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHH
Confidence 2111111100011111100 00 1233333 334455666677777777777766655 4443 33
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--------HHH
Q 043440 552 YTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTV--------VYN 623 (850)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~~ 623 (850)
|..-...+...|.+++|...+++..+.+. +|...-.--+....+.++.++|.++.....+.|. +.. .|-
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHH
Confidence 44445566666777777777777666532 3444444555556666777777777666666543 111 121
Q ss_pred HH--HHHHHhcCCHHHHHHHHHHHHH
Q 043440 624 SM--INGFRNLGNMEAALDMHRKMIN 647 (850)
Q Consensus 624 ~l--~~~~~~~g~~~~A~~~~~~~~~ 647 (850)
.+ +.+|.+.|++..|+.-|..+.+
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 11 3456666677666665555443
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4.1e-08 Score=104.92 Aligned_cols=706 Identities=12% Similarity=0.104 Sum_probs=336.4
Q ss_pred cCCCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHH--------------Hhc--CCC-C-CCh
Q 043440 15 SCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNH--------------YVS--GGS-E-PTS 76 (850)
Q Consensus 15 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~--------------~~~--~~~-~-~~~ 76 (850)
..-++|+.|+..-.+. +...-..-|..-.+-|...|. |++|...... +-. ..+ . .+-
T Consensus 339 ~~LqnpeLal~~A~R~----nLaGAe~Lfv~rFneLfaqG~-Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPL 413 (1666)
T KOG0985|consen 339 NVLQNPELALRLAVRA----NLAGAENLFVRRFNELFAQGE-YEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPL 413 (1666)
T ss_pred ccccChHHHHHhhhhc----CCccHHHHHHHHHHHHHhCcc-HHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcH
Confidence 3446788888766554 222233556677777888885 8888765332 111 111 1 112
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-----hhCC--CCC-----CHHH------HHHHH
Q 043440 77 AAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGM-----IERD--IIP-----LLRS------MNSVL 138 (850)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~--~~~-----~~~~------~~~l~ 138 (850)
-.++..+++.. +.+...-.-|++.-..+|+.+--.+++.+= .+.| +.| -..+ .+.++
T Consensus 414 LqYFg~LLdqG-----kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi 488 (1666)
T KOG0985|consen 414 LQYFGTLLDQG-----KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVI 488 (1666)
T ss_pred HHHHHHHHhcc-----cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHH
Confidence 23344444432 344444444555555566555555544321 1112 111 1112 23455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChh
Q 043440 139 KALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLK 218 (850)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 218 (850)
.++...|.++++.-+.. +.|..||. ..+++.+.+ -.++.+.++...+.+... ...-++.+...+.......
T Consensus 489 ~cfAE~Gqf~KiilY~k---KvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 489 QCFAETGQFKKIILYAK---KVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHhcchhHHHHHHH---HcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhh
Confidence 66666666666655543 34666663 334444444 466777766666655321 1111222222222222222
Q ss_pred HHHHHHHHHH------------------------------HCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043440 219 VACGLVKEMR------------------------------DMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPM 268 (850)
Q Consensus 219 ~A~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 268 (850)
.+..++-.++ ..+.....-+..+++.|.+.|-+..|++.+..+... .+
T Consensus 560 q~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DI--KR 637 (1666)
T KOG0985|consen 560 QCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KR 637 (1666)
T ss_pred hhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHH--HH
Confidence 2222222211 111111113666788888888888888777666431 11
Q ss_pred cHHHHHHH-----HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------
Q 043440 269 NLVVATSL-----MKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHM--------- 334 (850)
Q Consensus 269 ~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 334 (850)
..+.+.+ +..|.-.-.++++.+.++.|...++..|..+...+..-|+.+=-.+..+++|+.....
T Consensus 638 -~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgS 716 (1666)
T KOG0985|consen 638 -VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGS 716 (1666)
T ss_pred -HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHH
Confidence 1122211 2334455568888888888887777777666666666666665566666666665432
Q ss_pred --CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------C---------CHhHHHHHHHHHHhcCCHH
Q 043440 335 --GIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI------------A---------NVFTYNDLLAWLCKRGKVS 391 (850)
Q Consensus 335 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~---------~~~~~~~l~~~~~~~g~~~ 391 (850)
++..|+.+.-..|.+.++.|++.+..++.++---.+| + |..-+-.=+-.|.-.++..
T Consensus 717 ivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~ 796 (1666)
T KOG0985|consen 717 IVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQ 796 (1666)
T ss_pred HhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHH
Confidence 2345666677778888899988888777654321111 0 1111111111122222222
Q ss_pred HHHHHHHH-------------HHhCCCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 043440 392 EACNLWQK-------------MVSSGVRPS-----------VVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTY 447 (850)
Q Consensus 392 ~A~~~~~~-------------~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 447 (850)
+-++.|-+ +++..+.-+ .+....+..-.-+.+++.--...++..+..|.. |..++
T Consensus 797 kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~h 875 (1666)
T KOG0985|consen 797 KYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATH 875 (1666)
T ss_pred HHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHH
Confidence 22222222 221111100 011122233334555666666677777777766 88888
Q ss_pred HHHHHHHHhcCCHHHH----------HHHHHHHHhCCC----------CCCh---------hhHHHHHHHHHHcCChh--
Q 043440 448 SVLIDGYFKQGDAERA----------FDVLDQMENAKI----------SPTD---------YTSNIIINGLCKAGRTS-- 496 (850)
Q Consensus 448 ~~l~~~~~~~g~~~~A----------~~~~~~~~~~~~----------~~~~---------~~~~~l~~~~~~~g~~~-- 496 (850)
++|...|...++-.+- .-+=+...+++. .-|. ..|....+.+.+..+.+
T Consensus 876 nAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW 955 (1666)
T KOG0985|consen 876 NALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLW 955 (1666)
T ss_pred hhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHH
Confidence 8888877665442211 111111111110 0011 11222222222222221
Q ss_pred -HH--------HHHHHHHHHCCCC--CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHH------
Q 043440 497 -VA--------WDKLKKMVEKGFI--PKCLTYNSIIDGFVKEDDMISALTVYREMHESG--LSPNVVTYTILIN------ 557 (850)
Q Consensus 497 -~A--------~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~------ 557 (850)
+. +.+.++.+..+++ .|+...+.-+.++...+-..+-+++++++.-.. +..+...-+.|+-
T Consensus 956 ~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad 1035 (1666)
T KOG0985|consen 956 AKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD 1035 (1666)
T ss_pred HHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC
Confidence 11 2344444443322 233444455666666777777777777765321 1111111122221
Q ss_pred ---------------------HHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 043440 558 ---------------------GFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLS 616 (850)
Q Consensus 558 ---------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 616 (850)
.....+-+++|..+|.+.. .+..+.+.|+. ..++.+.|.++-++..
T Consensus 1036 ~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n----- 1102 (1666)
T KOG0985|consen 1036 RTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN----- 1102 (1666)
T ss_pred hHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-----
Confidence 1222333444444444321 12222222221 1223333333322221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 617 PNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLI 696 (850)
Q Consensus 617 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 696 (850)
.+..|+.+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.+++-..++..+.++.-.|... +.|+
T Consensus 1103 -~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 -EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred -ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 344566666666666666666655533 2345566666666666666666666666655544444333 3455
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCH--------------------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPNV--------------------------FIFNTLIAGYFKEGNLQEAFRLHNEM 750 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (850)
-+|++.++..+-.+++ .-||. .-|..|...+...|.++.|...-+++
T Consensus 1174 ~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5555555555433332 11233 33555566666666666665554443
Q ss_pred HHCCCCCCHHHHHHHHhhhhcCCchHHh
Q 043440 751 LDKGLVPDDTTYDILVNGKSRSDTWARK 778 (850)
Q Consensus 751 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a 778 (850)
-+..||..+-.+|...+.|.-|
T Consensus 1247 ------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1247 ------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred ------cchhHHHHHHHHHhchhhhhHH
Confidence 1456677777777777666555
No 66
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6.7e-08 Score=103.37 Aligned_cols=198 Identities=12% Similarity=0.105 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 548 NVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMIN 627 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 627 (850)
.+..|+.+..+-.+.|...+|++-|-+. .|+..|...++...+.|.+++-.+++....+..-.|.. =+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 4556777777777777777777766442 26677788888888888888888877776665444443 345677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN 707 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 707 (850)
+|++.++..+-.++.. .||......+.+-|...|.++.|.-+|... ..|..|...+...|+++.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 7888887766555432 467777777788888888887777666543 357778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCchHHhhc
Q 043440 708 ARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWARKKE 780 (850)
Q Consensus 708 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 780 (850)
|.+..+++- +..+|.-...+|...+.+.-| +|....+.....-.--|+.-|...|-|+|-..
T Consensus 1239 AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1239 AVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred HHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 888776653 568899998899887766544 34444444455566778999999999987544
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=4.4e-10 Score=108.32 Aligned_cols=286 Identities=12% Similarity=0.120 Sum_probs=187.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043440 282 KQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYK 361 (850)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (850)
-.|+|.+|.++..+-.+.+..| ...|..-+.+.-+.|+.+.+-.++.++.+..-+++.....+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3799999999999988765554 345666667788899999999999999886445667777788888899999999999
Q ss_pred HHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 362 LFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV-------VSYNNMILAHCTVKNMDEAYSVFSE 434 (850)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (850)
-...+.+..|.++.......++|.+.|++.+...++.++.+.|.-.+. .+|+.+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 999999999999999999999999999999999999999988765443 2455555544444444433334444
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 043440 435 MLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKC 514 (850)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 514 (850)
...+ ...++..-.+++.-+.++|+.++|.++..+..+++..|+.. ......+-++...-++..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3332 23345555566666667777777777776666665444311 1112233444444444444444432 2233
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043440 515 LTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMM 576 (850)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 576 (850)
..+.+|...|.+.+.|.+|...|+..++. .|+..+|+.+.+.+.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555566665555555443 4555555555555555555555555555544
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2e-10 Score=110.71 Aligned_cols=286 Identities=15% Similarity=0.132 Sum_probs=141.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHH
Q 043440 178 KEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFR 256 (850)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 256 (850)
..|++..|++...+..+.+.. ....|..-+.+.-+.|+.+.|-.++.++.+....++. +...........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 345555555555554444322 2233333344444555555555555555553223333 45555555555555555555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHH
Q 043440 257 LKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNK-------VTFAVLIEGCCTNGKVEKGYELYT 329 (850)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 329 (850)
-.+++.+.++ .++........+|.+.|++.....++.++.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 5555555432 24445555555555555555555555555554433322 244555544444444444333444
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 043440 330 QMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV 409 (850)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 409 (850)
..... .+.++..-.+++.-+.++|+.++|.++.++.++...+.. ....-...+-++.+.-++..++-.+.-. -++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCC-CCh
Confidence 33221 233444455555555566666666666666555544221 1111222344455444444444443311 133
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 410 VSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (850)
..+.++...|.+.+.|.+|.+.|+..++. .|+..+|+.+.+.+.+.|+..+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45555666666666666666666655543 45566666666666666666666666655543
No 69
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.9e-08 Score=103.84 Aligned_cols=544 Identities=13% Similarity=0.079 Sum_probs=285.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCCCHHHHHHHHHHH
Q 043440 141 LVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALG---------VKLDARAYRMVIQAL 211 (850)
Q Consensus 141 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~ 211 (850)
|...|+.+.|.+-.+.+. +...|..+.+.|.+..+++-|.-++..|.... -.++ ..=..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455677777766665554 33567777777777777776666665554321 0111 1111122223
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 043440 212 CRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALE 291 (850)
Q Consensus 212 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 291 (850)
...|.+++|..+|++..+ |-.|-..|-..|.+++|.++-+.--... =..+|.....-+-..++.+.|++
T Consensus 811 ieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 356777788877777665 4455556667777777777665432211 12345555555555677777777
Q ss_pred HHHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 043440 292 LLDKI----------KEDG---------LSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLK 352 (850)
Q Consensus 292 ~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (850)
.|++. +... ...|...|.-...-+-..|+++.|+.+|..... |-+++...|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 76652 1110 012334444445555567788888887776653 4556667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-----
Q 043440 353 AQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDE----- 427 (850)
Q Consensus 353 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----- 427 (850)
+|+.++|-++-++- .|..+...+...|-..|++.+|+..|.+... +...|+.| +.+++++
T Consensus 951 qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlc-KEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLC-KENDMKDRLANL 1015 (1416)
T ss_pred ccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHH-HhcCHHHHHHHH
Confidence 78888887776554 3666777888888888888888888877643 33444432 2222222
Q ss_pred -----------HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH--------HHh--CCCCCChhhHHHHH
Q 043440 428 -----------AYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQ--------MEN--AKISPTDYTSNIII 486 (850)
Q Consensus 428 -----------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~--~~~~~~~~~~~~l~ 486 (850)
|-.+|++.-. -....+..|-+.|.+.+|+++--+ ++. .....|+...+.-.
T Consensus 1016 al~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 2222222110 011223345566666666554211 111 12234555555566
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCCH----HHHHHHHHHHHH
Q 043440 487 NGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHE-SGLSPNV----VTYTILINGFCR 561 (850)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~ 561 (850)
..++...++++|..++-...+ |...+..|. ..+..--.++-+.|.- .+-.|+. .....+...|.+
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLARE---------FSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 666666777777666655443 122222222 2222222222222211 1112332 234556677778
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHH-------------HHHHHHcCCCCCHHHHHHHHHH
Q 043440 562 KNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKL-------------FAELLEVGLSPNTVVYNSMING 628 (850)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~~~ 628 (850)
.|.+..|-+-|.+.-.+ ..-+.++.+.|+.++-.-+ -+-+...+...++.+...++.-
T Consensus 1158 QG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF 1228 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF 1228 (1416)
T ss_pred ccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh
Confidence 88888877777654322 1234455556655442110 0111222334455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------
Q 043440 629 FRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLY-------- 700 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~-------- 700 (850)
|.+...++.--.+|+...... ..-|..+-. ..|-+++|...+.++.+++ -....++.|-.-..
T Consensus 1229 YTKgqafd~LanFY~~cAqiE----iee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~ 1299 (1416)
T KOG3617|consen 1229 YTKGQAFDHLANFYKSCAQIE----IEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRK 1299 (1416)
T ss_pred hhcchhHHHHHHHHHHHHHhh----HHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHH
Confidence 544444443333333332211 111211111 1244555555555555432 11122332221111
Q ss_pred ---hCCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043440 701 ---GKGQLENARKIFDEMNRKCLTP----NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTY 762 (850)
Q Consensus 701 ---~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 762 (850)
-..+..+.+.-...|.+..+.| -...|..||..|....+|..|-+.+++|..+-+.-|..+|
T Consensus 1300 ~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1300 LQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTF 1368 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhcc
Confidence 1225556666666777654433 3456888999999999999999999999987666554444
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.46 E-value=1.3e-07 Score=97.72 Aligned_cols=580 Identities=14% Similarity=0.120 Sum_probs=290.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC---------CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIER---------DIIPLLRS-MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSV 167 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 167 (850)
+|..-...|.+..+++.|+++|.+--.. ..+..+.. =...+.-+...|+++.|...|-+..
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------- 733 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------- 733 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------
Confidence 3444455566666666777666542110 01111111 1122333344455555554443321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 043440 168 TIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVK 247 (850)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (850)
.....+.+-.....+..|..+++.+..+.. -.--|..+..-|...|+++.|.++|.+.- .+.--|.+|.+
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k 803 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGK 803 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhc
Confidence 112233334455666666666666554321 22235556666666677777776664321 34455666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043440 248 HGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYEL 327 (850)
Q Consensus 248 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (850)
.|++++|.++-++.. |+......|.+-..-+-++|++.+|.+++-.+ -.|+. .|..|-+.|..+..+++
T Consensus 804 ~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~~p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----GEPDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----cCchH-----HHHHHHhhCcchHHHHH
Confidence 777777766655542 33334444555555556667777766666554 33442 34556666666666665
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH-------
Q 043440 328 YTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKM------- 400 (850)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 400 (850)
.++-.- ..-..|...+..-|-..|++..|...|-++.+ |.+-+++|-..+-|++|.++-+.-
T Consensus 873 v~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriaktegg~n~~k 941 (1636)
T KOG3616|consen 873 VEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKTEGGANAEK 941 (1636)
T ss_pred HHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhccccccHHH
Confidence 544321 11124555566667777888888777765543 556666777777777766554321
Q ss_pred -------HhCCCCCChhh------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043440 401 -------VSSGVRPSVVS------YNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVL 467 (850)
Q Consensus 401 -------~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (850)
+..|-...+.. ....+...+..+.++-|.++-+-..+... ..+...+...+-..|++++|.+.|
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~---~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKM---GEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccC---ccchhHHhhhhhhccchhhhhHhh
Confidence 11111101111 11222334455556666655554444321 122334445566789999998888
Q ss_pred HHHHhCCCCCChhhHHHH-------------------HHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc
Q 043440 468 DQMENAKISPTDYTSNII-------------------INGLCKAGRTSVAWDKLKKMVEKGFIPK--CLTYNSIIDGFVK 526 (850)
Q Consensus 468 ~~~~~~~~~~~~~~~~~l-------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 526 (850)
-+.++.+. -..||... +.++.+.++|..|.++-+.- .|+ ..++..-.+....
T Consensus 1019 veaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar~aie 1091 (1636)
T KOG3616|consen 1019 VEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQARGAIE 1091 (1636)
T ss_pred HHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhhcccc
Confidence 77766531 11122111 12233333444433332221 122 1234444455556
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHcCCCcCHhhHHHH
Q 043440 527 EDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEM----------------MNEGLQLDATAYGSL 590 (850)
Q Consensus 527 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~~~~~~~~~~~~l 590 (850)
.|++.+|..++-+.. +|+. .++.|...+-+..|+++-+.. .++|.. .+..+..-
T Consensus 1092 e~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaq 1161 (1636)
T KOG3616|consen 1092 EGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQ 1161 (1636)
T ss_pred ccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHH
Confidence 677777766554332 4553 234455555566555544322 222222 34455555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC---------------------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 591 INGFCRRRDMESACKLFAELLEVGLS---------------------PN--TVVYNSMINGFRNLGNMEAALDMHRKMIN 647 (850)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~~~---------------------p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (850)
..-+-+.|++.+|...+-++-+.... |+ .....+.+.++...|..+.|-+++-..-
T Consensus 1162 ak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~- 1240 (1636)
T KOG3616|consen 1162 AKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD- 1240 (1636)
T ss_pred HHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhh-
Confidence 56677778888877776665322111 11 1122222222333344444433332111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------HHCCCCCCHH---HHHHHHHHHHhCCCHHHHH
Q 043440 648 DGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEM---------------LSKGIEPDII---TYTVLINGLYGKGQLENAR 709 (850)
Q Consensus 648 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~g~~~~~~---~~~~l~~~~~~~g~~~~A~ 709 (850)
.-..-|+++++...|.+|.++.++. ++..-+.+.. -..+.++.+...+++++|+
T Consensus 1241 --------~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~i 1312 (1636)
T KOG3616|consen 1241 --------LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAI 1312 (1636)
T ss_pred --------hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHH
Confidence 0112355666666666666554443 2211111111 1234567788899999887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 043440 710 KIFDEMNRKCLTPNVFIFNTLI-AGYFKEGNLQEAFRLHNEM 750 (850)
Q Consensus 710 ~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~ 750 (850)
+.. .+.+.+|-..-|..+- ..+.+.|+...|+.++++-
T Consensus 1313 dta---k~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1313 DTA---KKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQH 1351 (1636)
T ss_pred HHH---HhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 654 4445666555555543 3567889999998887765
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=4.4e-11 Score=131.54 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=184.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCC
Q 043440 145 NLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACL---------KEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKP 215 (850)
Q Consensus 145 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 215 (850)
+.+++|..+|++..+.++. +...|..+..++. ..+++++|...++++.+.++. +..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 5688999999999887543 4555665555443 335589999999999988654 7788888888899999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 216 NLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDK 295 (850)
Q Consensus 216 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (850)
++++|...|+++++.++....++..++.++...|++++|+..+++.++.++. +...+..++..+...|++++|+..+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999976554448899999999999999999999999987544 333444455567778999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCH
Q 043440 296 IKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPS-VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANV 374 (850)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (850)
+.+...+.+...+..+..++...|++++|...+.++... .|+ ....+.+...|+..| +.|...++.+.+..-...
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 876532334556777888899999999999999887664 333 444556666777777 477777777666433111
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 375 FTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.-...+...|.-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1111245556667777777766 777765
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=8.9e-11 Score=129.14 Aligned_cols=148 Identities=11% Similarity=-0.030 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 251 LTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQ 330 (850)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (850)
+++|...++++++.++. +..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444444443321 34444444444444444444444444444431 11233344444444444444444444444
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 331 MKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI-ANVFTYNDLLAWLCKRGKVSEACNLWQKMV 401 (850)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (850)
+++.... +...+..++..+...|++++|+..++++++..+ .++..+..+...+...|++++|...+.++.
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 4443211 111112222223334444555555544444332 233344444444555555555555554443
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1.8e-11 Score=113.62 Aligned_cols=232 Identities=16% Similarity=0.092 Sum_probs=185.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc
Q 043440 518 NSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRR 597 (850)
Q Consensus 518 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 597 (850)
+.+..+|.+.|-+.+|.+.++..++. .|-+.||..|...|.+..++..|+.++.+.++. .+-++.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56677888888888888888887776 667778888888888888888888888888775 334555566677788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043440 598 RDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLY 677 (850)
Q Consensus 598 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 677 (850)
++.++|.++++...+... .++.....+...|.-.++++-|+.+|++++..| ..++..|+.+.-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 888999999988887643 366677777778888899999999999999988 567788888888888889999999999
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 678 SEMLSKGIEPD--IITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 678 ~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
++++..-..|+ ..+|..+.......|++.-|...|+-.+..+ ..+.++++.|.-.-.+.|++++|..++.......+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 98887543344 3478888888888899999999999888754 23678899999888999999999999998876543
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.1e-08 Score=93.69 Aligned_cols=266 Identities=15% Similarity=0.071 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 043440 269 NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKV-TFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLL 347 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 347 (850)
|+.....+.+.+...|+.++|...|++..- ..|+.. ......-.+.+.|+++....+...+.... +....-|..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 444444445555555555555555544433 222211 11111222334444444444444443321 01111122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDE 427 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 427 (850)
.......++..|+.+-++.++..+.+...+-.-+..+...|+.++|.-.|+......+ -+...|..++..|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHH
Confidence 2233344555555555555555555555555555555555555555555555444311 133455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHH
Q 043440 428 AYSVFSEMLEKRVTPNVVTYSVLI-DGYFK-QGDAERAFDVLDQMENAKISPT-DYTSNIIINGLCKAGRTSVAWDKLKK 504 (850)
Q Consensus 428 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (850)
|.-+-+...+. ++.+..+.+.+. ..+.- ..--++|..+++...+. .|+ ....+.+...+...|...+++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 55444444332 222333333332 22221 11234555555554443 232 22334444445555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 043440 505 MVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHES 543 (850)
Q Consensus 505 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 543 (850)
.+.. .||....+.|.+.+...+.+.+|.+.|...+..
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5542 345555555555555555566666655555554
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.8e-08 Score=95.97 Aligned_cols=400 Identities=11% Similarity=0.049 Sum_probs=233.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQG-DLSSALELLDKIKEDGLSPNKVTFAVLIEGC 315 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (850)
.....+.+|...++-+.|+..+.+.++.- ...--|.++..+.+.| +-.++.--+...+.. .+ .... .|.+.
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp---~aL~-~i~~l 170 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CP---MALQ-VIEAL 170 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHh-cc---hHHH-HHHHH
Confidence 56677888888899999988877765431 2222333333333333 322333333333221 11 1111 11111
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH--HhcCCHHHHHHHH--HHHHHCCCCCHhHHHHHHHHHHhcCCHH
Q 043440 316 CTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGF--LKAQLLEEAYKLF--DEAVDSGIANVFTYNDLLAWLCKRGKVS 391 (850)
Q Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (850)
.+.+ +..+...-..|-...++|...+...-+.++ +-.++-..|...+ -+....-+.|+.....+...+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 1111 011111111222222233322222223333 2334444444444 3333444478888888999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 392 EACNLWQKMVSSGVRPSVVS-YNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQM 470 (850)
Q Consensus 392 ~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (850)
+|+..|++.... .|+..+ .....-.+.+.|+++....+...+.... .-....|..-+.......+++.|+.+-++.
T Consensus 250 ~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 250 QAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred HHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999888764 333321 1122223456788887777777776542 123334444455556677888888888888
Q ss_pred HhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHH
Q 043440 471 ENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVV 550 (850)
Q Consensus 471 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 550 (850)
++.+ +.+...+..-...+...++.++|.-.|+..+...+ .+...|..|+..|...|++.+|.-.-+...+. ++.+..
T Consensus 327 I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~ 403 (564)
T KOG1174|consen 327 IDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSAR 403 (564)
T ss_pred hccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchh
Confidence 7764 33455565566777788888888888888876522 36678888888888888888887776665544 244555
Q ss_pred HHHHHH-HHHHH-cCCHHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 551 TYTILI-NGFCR-KNEIDLALKMRNEMMNEGLQLD-ATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMIN 627 (850)
Q Consensus 551 ~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 627 (850)
+...+. ..+.- ..--++|.+++++.++. .|+ ..+.+.+...+...|..++++.+++..... .||....+.|.+
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGD 479 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHH
Confidence 554442 22221 22346777777777664 233 334556666777778888888888877764 567777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPCDLQT 656 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 656 (850)
.+...+.+++|++.|..++..+ |.+..+
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~d-P~~~~s 507 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQD-PKSKRT 507 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-ccchHH
Confidence 8888888888888888877765 444333
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=3e-10 Score=111.63 Aligned_cols=200 Identities=17% Similarity=0.157 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043440 549 VVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMING 628 (850)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 628 (850)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4455566666667777777777777766543 224556666667777777777777777777665432 45566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043440 629 FRNLGNMEAALDMHRKMINDG-IPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN 707 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 707 (850)
+...|++++|.+.|+++.... .+.....+..+..++...|++++|...+++.++.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776642 12234556666777777777777777777777642 2345566777777777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 708 ARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 708 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
|...+++..+. .+++...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88877777765 233566666777777777888887777776654
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=6.1e-08 Score=98.32 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 043440 599 DMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHR--------KMINDGIPCDLQTYTTLIAGLLEEGKL 670 (850)
Q Consensus 599 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 670 (850)
.+.++.+++....+..+.-..++.-.++......|+++.|++++. .+.+.+..|. +...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 467777777777665433335566667777788899999988888 5555544443 444566667777776
Q ss_pred HHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 671 LTASNLYSEMLSK--GIEPDII----TYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAF 744 (850)
Q Consensus 671 ~~A~~~~~~~~~~--g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 744 (850)
+-|..++.+++.. .-.+... ++.-++..-.+.|+.++|..+++++.+.. ++|..+...++.+|+.. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 7777777766641 0112222 23333334456799999999999998852 45788888888888877 577777
Q ss_pred HHHHHH
Q 043440 745 RLHNEM 750 (850)
Q Consensus 745 ~~~~~~ 750 (850)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 765554
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=2.8e-10 Score=111.84 Aligned_cols=195 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 043440 134 MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR 213 (850)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (850)
+..++..+...|++++|...+++..+..+ .+...+..+...+...|++++|...+++..+..+. +...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 34444444455555555555554443321 12334444444445555555555555554443322 33444444455555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALE 291 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 291 (850)
.|++++|...++++......+.. .+..++.++...|++++|...+++..+..+ .+...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555443222211 444455555555555555555555554322 133445555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 292 LLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMK 332 (850)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (850)
.+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555443 22233444444445555555555555544443
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.2e-11 Score=111.21 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCC
Q 043440 171 VMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGN 250 (850)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 250 (850)
-+.++|.+.|.+.+|.+.|....+. .|-+.+|..+.++|.+...+..|+.++.+-++.-+..-.....+++++...++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3445555555555555555554443 23334444455555555555555555555544321111133344455555555
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 251 LTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQ 330 (850)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (850)
.++|.+++..+++.. +.++.+...+...|.-.++++-|+..++++++.|.. +...|+.+.-+|.-.++++-++..|.+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555555432 224444444445555555555555555555555443 344555555555555555555555555
Q ss_pred HHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 331 MKHMGIKPS--VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 331 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
.+...-.|+ ..+|-.+.......|++.-|.+.|+-.+..++.+..++|.|.-.-.+.|++++|..++.....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 544322222 223334444444455555555555555555555555555555555555555555555555444
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=4.5e-08 Score=103.68 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 043440 448 SVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKE 527 (850)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 527 (850)
..+...|...|++++|++++++.+++. |..+..|..-...+-+.|++.+|.+.++.....+.. |-..-+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 344455555666666666666655552 222444555555566666666666666665554322 333334444555566
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043440 528 DDMISALTVYREMHESGLSPNVV------TY--TILINGFCRKNEIDLALKMRNEMMN 577 (850)
Q Consensus 528 ~~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (850)
|++++|.+++....+.+..|... .| .....+|.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666555444222111 11 2334566667777777766666544
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=8.1e-08 Score=97.44 Aligned_cols=465 Identities=12% Similarity=0.067 Sum_probs=231.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 043440 207 VIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDL 286 (850)
Q Consensus 207 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 286 (850)
=++.+...|++++|.+...+++..++.+..++..-+-++.+.+++++|+.+.+.-... ..+.+-+..-..+..+.++.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 3455567778888888888887766444446666666777788888887555432210 11111112223444577888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 287 SSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKP-SVFIVNSLLCGFLKAQLLEEAYKLFDE 365 (850)
Q Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (850)
++|+..++-. ...+..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+-.. ..+. +.+.
T Consensus 96 Dealk~~~~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQS 166 (652)
T ss_pred HHHHHHHhcc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHh
Confidence 8888887733 12233466666677788888888888888887765331 11111112111110 0111 1111
Q ss_pred HHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043440 366 AVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVV 445 (850)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 445 (850)
.......+-..+......+...|++.+|+++++...+.+.+ .++ .++.. .+-++.= + ..
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~--eEeie~e----l---~~ 225 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN--EEEIEEE----L---NP 225 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc--hhhHHHH----H---HH
Confidence 11111123334444556667778888888877776432100 000 00000 0000000 0 01
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----HHHHHHHHHHcCChhH--HHHHHHHHHHC-----------
Q 043440 446 TYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYT----SNIIINGLCKAGRTSV--AWDKLKKMVEK----------- 508 (850)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~--A~~~~~~~~~~----------- 508 (850)
.-..+..++...|+.++|..++..+++.. ++|... -|.|+ ++....++.+ ++..++.....
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~ 303 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK 303 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11233344445555555555555555544 222211 11111 1111111111 11111111100
Q ss_pred CCCCCHHHH-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCcCHh
Q 043440 509 GFIPKCLTY-NSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGF--CRKNEIDLALKMRNEMMNEGLQLDAT 585 (850)
Q Consensus 509 ~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~ 585 (850)
... ..+.. +.++..| .+..+.+.++....... .|.. .+.+++... ++...+..+.+++...-+........
T Consensus 304 ~qk-~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~ 377 (652)
T KOG2376|consen 304 KQK-QAIYRNNALLALF--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV 377 (652)
T ss_pred HHH-HHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH
Confidence 000 11111 2222332 23334444443333221 2332 223333222 22234667777777766654443455
Q ss_pred hHHHHHHHHHccCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH-
Q 043440 586 AYGSLINGFCRRRDMESACKLFA--------ELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND--GIPCDL- 654 (850)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~- 654 (850)
+.-.++......|+++.|++++. .+.+.+..|-. ...+...+.+.++-+.|..++.+.+.. .-.+..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 66667777888889999888888 55555544443 444556677777766677776666543 111111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043440 655 ---QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEM 715 (850)
Q Consensus 655 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (850)
.++.-++..-.+.|+-++|..+++++.+. .++|..+...++.+|++- +.+.|..+-..+
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 23333334445678999999999999885 367778888888887654 466666655543
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.36 E-value=3.6e-07 Score=94.63 Aligned_cols=581 Identities=16% Similarity=0.092 Sum_probs=259.0
Q ss_pred HHHHhcCChhHHHHHHHHH-------hhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 104 RSYVRADRINDAVDCCNGM-------IERDII-PLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA 175 (850)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (850)
++|...|+...|..+++.. ++.|-. .+..-..+++..+. .++.+|..+|-+-- .....+..
T Consensus 498 rcfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn---------~te~aigm 566 (1636)
T KOG3616|consen 498 RCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN---------ATEEAIGM 566 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc---------cHHHHHHH
Confidence 4555556666665554432 122221 22222334444443 35667766664421 12344556
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHH
Q 043440 176 CLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAF 255 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 255 (850)
|....++++|..+-+. .|.+.-...-.+.++++...|+-+.|.++-+ .+.--..-|+.|.+.|.+..|.
T Consensus 567 y~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~--------sdgd~laaiqlyika~~p~~a~ 635 (1636)
T KOG3616|consen 567 YQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKE--------SDGDGLAAIQLYIKAGKPAKAA 635 (1636)
T ss_pred HHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhcc--------ccCccHHHHHHHHHcCCchHHH
Confidence 6677778887776543 2222222334555666777776666654321 1122344577788888887776
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043440 256 RLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (850)
+....-.. ...|......+..++.+..-+++|-.+|+++. .|+. .+.+|-+-.-+-+|+++-+..
T Consensus 636 ~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~----d~dk-----ale~fkkgdaf~kaielarfa---- 700 (1636)
T KOG3616|consen 636 RAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIH----DFDK-----ALECFKKGDAFGKAIELARFA---- 700 (1636)
T ss_pred HhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh----CHHH-----HHHHHHcccHHHHHHHHHHhh----
Confidence 65422111 12355555555566666666666666666652 2221 122222222234444433221
Q ss_pred CCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 043440 336 IKPSVFIVN-SLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNN 414 (850)
Q Consensus 336 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 414 (850)
++..+++.. .-..-+...|+++.|+..|-++.. .-..+.+......|.+|+.+++.+.+... ..--|..
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ 770 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGE 770 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchH
Confidence 121222111 111223344555555555543321 11223344445556666666665554321 2223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 043440 415 MILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGR 494 (850)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 494 (850)
+...|...|+++.|.++|-+.- .++-.|.+|.+.|+|+.|.++-.+.. |.......|..-..-+-+.|+
T Consensus 771 iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence 4555566666666666654321 13344555666666666655554432 222233334444444445555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043440 495 TSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNE 574 (850)
Q Consensus 495 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 574 (850)
+.+|.+++-.... |+ ..|.+|-+.|..+..+++..+-.-. .-..|...+..-|-..|++..|...|-+
T Consensus 840 f~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 840 FAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 5555544432211 22 1234455555555544444432211 0112233334444445555555444432
Q ss_pred HHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH--------------HcCCCCCHH------HHHHHHHHHHhcCC
Q 043440 575 MMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELL--------------EVGLSPNTV------VYNSMINGFRNLGN 634 (850)
Q Consensus 575 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------~~~~~p~~~------~~~~l~~~~~~~g~ 634 (850)
.- -|.+-+++|-..+-+++|.++-+.-- ..|-..-+. ....-++--+..+.
T Consensus 908 a~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~a 978 (1636)
T KOG3616|consen 908 AG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCA 978 (1636)
T ss_pred hh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccc
Confidence 21 12233333444444444433322100 000000000 01111222234444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------------------H
Q 043440 635 MEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTV-------------------L 695 (850)
Q Consensus 635 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-------------------l 695 (850)
++-|.++-+-..+.. .+. ....+...+...|++++|.+.+-++++.+ .-..+|.. .
T Consensus 979 fd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikln--tynitwcqavpsrfd~e~ir~gnkpe~a 1053 (1636)
T KOG3616|consen 979 FDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEA 1053 (1636)
T ss_pred hhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHH
Confidence 555555544444332 122 22233444567788888877777766532 11112211 1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCch
Q 043440 696 INGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTW 775 (850)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 775 (850)
+.++.+..++..|..+.+.--+. .-+..|..-.++-...|++.+|..++-+.. +|+.. ++-+...|.|
T Consensus 1054 v~mfi~dndwa~aervae~h~~~---~l~dv~tgqar~aiee~d~~kae~fllran----kp~i~-----l~yf~e~~lw 1121 (1636)
T KOG3616|consen 1054 VEMFIHDNDWAAAERVAEAHCED---LLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEAELW 1121 (1636)
T ss_pred HHHhhhcccHHHHHHHHHhhChh---hhHHHHhhhhhccccccchhhhhhheeecC----CCchH-----HHHHHHhccC
Confidence 22333344444444333322110 112345555555666777777776655542 45532 4555666777
Q ss_pred HHhhc
Q 043440 776 ARKKE 780 (850)
Q Consensus 776 ~~a~~ 780 (850)
.+|.+
T Consensus 1122 ~dalr 1126 (1636)
T KOG3616|consen 1122 PDALR 1126 (1636)
T ss_pred hHHHH
Confidence 76654
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.6e-07 Score=98.36 Aligned_cols=236 Identities=16% Similarity=0.134 Sum_probs=141.0
Q ss_pred CCCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCC
Q 043440 16 CRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLD 95 (850)
Q Consensus 16 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (850)
..|+.+.|.+-.+.+ .|-..|..|+....+.++ .+-|..+|.++-...+ ...++.+.+.|-...
T Consensus 740 tiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~R-LDVAkVClGhm~~aRg--------aRAlR~a~q~~~e~e 803 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRR-LDVAKVCLGHMKNARG--------ARALRRAQQNGEEDE 803 (1416)
T ss_pred EeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhh--------HHHHHHHHhCCcchh
Confidence 457777776666654 345678899999999996 8999988887653211 111223322221111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 96 SGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA 175 (850)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (850)
.. .+-.-...|++++|..+|.+..+. ..|=..|...|.+++|.++-+.=...- =..||.....-
T Consensus 804 ak----vAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 804 AK----VAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKY 867 (1416)
T ss_pred hH----HHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHH
Confidence 11 111223567778888877776543 334445566777777777665422211 12344444444
Q ss_pred HHhcCCHHHHHHHHHHHhhC----------C---------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh
Q 043440 176 CLKEDTTEEAEKYFRDAKAL----------G---------VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR 236 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 236 (850)
+-..++.+.|++.|++.... . -..|...|..-..-+-..|+.+.|+.+|..+.+
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 45566677777776643211 0 012444455555555566777777777776654
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIK 297 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 297 (850)
|..++++.|-+|+.++|-++-++- -|..+...|.+.|-..|++.+|...|.+..
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 677777777778888777776653 356666677777877888888887777763
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.33 E-value=9.1e-09 Score=96.70 Aligned_cols=299 Identities=14% Similarity=0.149 Sum_probs=148.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 043440 443 NVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTY-NSII 521 (850)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 521 (850)
++.-..-+...+...|++..|+.-|....+.+ +.+..++-.-...|...|+...|+.-+.+.++. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44445556677777778888887777776542 222333333455677777777777777777764 5554321 1223
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCC--HHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhH
Q 043440 522 DGFVKEDDMISALTVYREMHESGLSPN--VVTYT------------ILINGFCRKNEIDLALKMRNEMMNEGLQLDATAY 587 (850)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 587 (850)
..+.+.|.+++|..-|+.+++.....+ ...+. ..+..+...|+...|+.....+++. .+.|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHH
Confidence 456677888888888887777631111 11111 1112233345555555555555553 22345555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HH---
Q 043440 588 GSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQ-TYT---TL--- 660 (850)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~---~l--- 660 (850)
..-..+|...|++..|+.-++...+... .+..++.-+-..+...|+.+.++...++.++.+ ||.. .|. .|
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHH
Confidence 5555555555555555555554444322 233444444444555555555555555555542 2221 111 11
Q ss_pred H------HHHHhcCCHHHHHHHHHHHHHCCCCCC--HH---HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 043440 661 I------AGLLEEGKLLTASNLYSEMLSKGIEPD--II---TYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFN 728 (850)
Q Consensus 661 ~------~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 728 (850)
. ....+.++|.++++-.+..++. .|. .+ .+..+-.++...|++-+|+....+.++ +.| |+.++.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~ 345 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHH
Confidence 0 1112334444444444444442 222 11 122233344444555555555555554 223 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 729 TLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 729 ~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
--+.+|.-...+++|+.-|+.+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555555555555555555555544
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=4.7e-08 Score=103.53 Aligned_cols=305 Identities=16% Similarity=0.138 Sum_probs=147.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh---
Q 043440 103 LRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTI-RVMMRACLK--- 178 (850)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--- 178 (850)
...+...|++++|++.+..... .+..........+..+.+.|+.++|...|..+...+ |+...| ..+..++.-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4556677888888877765332 233244556666777777777777777777777763 344433 344443311
Q ss_pred --cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHH
Q 043440 179 --EDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNL-KVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAF 255 (850)
Q Consensus 179 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 255 (850)
....+....+++.+...-+ .......+.-.+.....+ ..+..++..+...|+.+ ++..|-..|....+.+-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs--lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS--LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch--HHHHHHHHHcChhHHHHHH
Confidence 1234455555555544321 111111111111110111 12222333333333211 2333333333222222222
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 256 RLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNK--VTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
.++....... ...+.+...- .....+|.. .++..+...|...|++++|++.++..++
T Consensus 164 ~l~~~~~~~l---------------~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 164 SLVEEYVNSL---------------ESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred HHHHHHHHhh---------------cccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2222221100 0000000000 000012333 2334455566666777777777776666
Q ss_pred CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--
Q 043440 334 MGIKPS-VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV-- 410 (850)
Q Consensus 334 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 410 (850)
.. |+ +..|..-...+-+.|++.+|.+.++.+...+..|...-+..+..+.++|++++|.+++......+..|...
T Consensus 223 ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 223 HT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred cC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 52 33 55566666666667777777777777766666666666666666777777777777666665554322211
Q ss_pred ----hH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 411 ----SY--NNMILAHCTVKNMDEAYSVFSEMLE 437 (850)
Q Consensus 411 ----~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (850)
.| .....+|.+.|++..|++.|..+.+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2334556666776666666655544
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=6.2e-10 Score=115.81 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=99.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC-----CCC-C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-----CCC-CCh--
Q 043440 172 MMRACLKEDTTEEAEKYFRDAKAL-----GVK-L-DARAYRMVIQALCRKPNLKVACGLVKEMRDM-----GRV-PSR-- 236 (850)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~-- 236 (850)
+...|...+++++|..+|+++... |.. | -..+++.|..+|++.|++++|..+++++.+. +.. +..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444455555555555555554321 111 1 1133555555666666666666666655432 111 122
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC-c---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------CC
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSC---GKPM-N---LVVATSLMKGYYKQGDLSSALELLDKIKEDG-------LS 302 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~ 302 (850)
.+..++..++..+++++|..+++...+. -+.+ + ..+++.|...|.+.|++++|.++|++++... ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 4556666666667777666666655431 0111 1 2356666666666677777766666654421 11
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 303 PNKVTFAVLIEGCCTNGKVEKGYELYTQMKH----MGIK-PS-VFIVNSLLCGFLKAQLLEEAYKLFDEAV 367 (850)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (850)
-....++.+...|.+.+.+.+|.++|.+... .|.. |+ ..+|..|...|...|++++|+++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1123455566666666666666666655432 1211 11 3445555555555555555555554443
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=2.3e-09 Score=111.62 Aligned_cols=236 Identities=19% Similarity=0.220 Sum_probs=133.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC--
Q 043440 516 TYNSIIDGFVKEDDMISALTVYREMHES-----G-LSPNVVT-YTILINGFCRKNEIDLALKMRNEMMNE-----GLQ-- 581 (850)
Q Consensus 516 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-- 581 (850)
+...+...|...|+++.|..+++..++. | ..|.+.+ .+.+...|...+++++|..+|+++... |..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444556666666666666666655443 1 0222222 223555666677777777777766532 111
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 043440 582 LDATAYGSLINGFCRRRDMESACKLFAELLEV-----GLS-PNT-VVYNSMINGFRNLGNMEAALDMHRKMIND-----G 649 (850)
Q Consensus 582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 649 (850)
.-..+++.|...|.+.|++++|...+++..+. +.. |.+ ..++.++..++..+++++|..++++..+. |
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 11344555666677777777766666655432 111 121 23445566677777777777777765543 1
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---
Q 043440 650 I--PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK----GI--EP-DIITYTVLINGLYGKGQLENARKIFDEMNR--- 717 (850)
Q Consensus 650 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 717 (850)
. +.-..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 0 011346777777777777777777777777652 11 11 133556667777777777777777765432
Q ss_pred -CCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 718 -KCL-TP-NVFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 718 -~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
.|. .| ...+|..|+..|...|++++|+++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 121 12 23447777777777777777777766664
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.29 E-value=1.9e-08 Score=94.62 Aligned_cols=305 Identities=12% Similarity=0.068 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRV- 171 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 171 (850)
+.+..-..-|.+.+...|.+.+|+..|..+.+-++.. -.++..-...|+..|+-.-|+.=|..+++. .||-..-..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 3445556778899999999999999999998876652 234455677899999999999999999887 677554433
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--------------HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh
Q 043440 172 MMRACLKEDTTEEAEKYFRDAKALGVKLDAR--------------AYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRV 237 (850)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 237 (850)
-...+.++|.+++|..-|+.+++..+..+.. .....+..+...|+...|+.+...+++..+.....
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 2345789999999999999999876532211 12223444556677778888777777744333336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH----HHH--
Q 043440 238 YTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTF----AVL-- 311 (850)
Q Consensus 238 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l-- 311 (850)
+..-..+|...|++..|+.-+..+.+.. ..++..+..+-..+...|+.+.++...++.++ ..||.... ..|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHH
Confidence 7777777788888887777776665543 23566666677777777777777777777766 44443221 111
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHH
Q 043440 312 -------IEGCCTNGKVEKGYELYTQMKHMGIKPSVFIV---NSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLL 381 (850)
Q Consensus 312 -------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 381 (850)
+......+++-++++..+...+.........+ ..+-.++...+++.+|++...++++..|.|+.++-.-.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 11223344444555555544443221111111 22223334445555555555555555555555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 043440 382 AWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.+|.-...++.|+.-|+...+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 5555555555555555555543
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.9e-08 Score=99.74 Aligned_cols=221 Identities=16% Similarity=0.118 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------hHHHH
Q 043440 378 NDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVV-------TYSVL 450 (850)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l 450 (850)
-.+++...+..++..|++.+....+.. -+..-++....+|...|.+.+....-...++.|.. ... .+..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 344555555555555555555555442 13333334444555555555554444444443321 111 11223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCC
Q 043440 451 IDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKC-LTYNSIIDGFVKEDD 529 (850)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 529 (850)
...|.+.++++.|+..|.+.......|+. +.+....+++........-.+ |.. .-...-...+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 33555666777777777766554333322 222233344443333333221 221 111222556667777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 043440 530 MISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAE 609 (850)
Q Consensus 530 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 609 (850)
+..|+..|.++++.. |.|...|....-+|.+.|.+..|+.-.+..++.+. +....|.--..++....++++|.+.|.+
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777775 66777777777777777777777777666666521 2334444445566666777888888877
Q ss_pred HHHcC
Q 043440 610 LLEVG 614 (850)
Q Consensus 610 ~~~~~ 614 (850)
..+.+
T Consensus 452 ale~d 456 (539)
T KOG0548|consen 452 ALELD 456 (539)
T ss_pred HHhcC
Confidence 77764
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.1e-08 Score=98.71 Aligned_cols=446 Identities=15% Similarity=0.123 Sum_probs=260.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCC
Q 043440 277 MKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPS-VFIVNSLLCGFLKAQL 355 (850)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 355 (850)
..+.+..|+++.|+..|.+.+... ++|.+.|+.-..+|.+.|++++|++--.+.++. .|+ ..-|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456677888999999988888764 347788888888888888888888776666654 566 4567777888888888
Q ss_pred HHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHH
Q 043440 356 LEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVK-NMDEAYSVFSE 434 (850)
Q Consensus 356 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 434 (850)
+++|+.-|.+.++..|.|...++.+.+++. .+.+. +.. --++..|..+..-=.... -.+.+....-+
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 889988888888888888888888887771 11111 110 012222222221100000 01112222222
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH-C
Q 043440 435 MLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQM-----ENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVE-K 508 (850)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 508 (850)
.+..+ |. . +..|.+-.++..+.-.+... ...+..+....-+. ..+. ........++.+ .
T Consensus 154 ~~~~~--p~--~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p----~~~~---~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 154 IIQKN--PT--S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEP----CKQE---HNGFPIIEDNTEER 218 (539)
T ss_pred HhhcC--cH--h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCc----cccc---CCCCCccchhHHHH
Confidence 22221 11 1 11111111111121111110 00110000000000 0000 000000000000 0
Q ss_pred CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHH
Q 043440 509 GFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYG 588 (850)
Q Consensus 509 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 588 (850)
....-..-...+.++..+..+++.|++-|...++.. .+..-++....+|...|.+.+.........+.|.. ...-|+
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~k 295 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYK 295 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHH
Confidence 000112234566777777888888888888887764 45555566677788888887777777776665433 222222
Q ss_pred H-------HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 043440 589 S-------LINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDL-QTYTTL 660 (850)
Q Consensus 589 ~-------li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 660 (850)
. +..+|.+.++++.|+..|.+.......|+. ..+....++++...+...-.+ |.. .-...=
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~k 364 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREK 364 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHH
Confidence 2 334666778889999999887765444332 233444566666555544433 222 222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 043440 661 IAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGN 739 (850)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 739 (850)
...+.+.|++..|+..|.+++... +.|...|.....+|.+.|.+..|++-.+..++. .| ....|..=+.++....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 666788999999999999999864 557788999999999999999999999999885 34 45557777888888889
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhc
Q 043440 740 LQEAFRLHNEMLDKGLVPDDTTYDILVNGKSR 771 (850)
Q Consensus 740 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 771 (850)
|++|.+.|++.++.. |+..-+..-+.-|..
T Consensus 442 ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999999998754 554444433333333
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=7.6e-09 Score=92.33 Aligned_cols=193 Identities=15% Similarity=0.082 Sum_probs=106.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCC
Q 043440 137 VLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPN 216 (850)
Q Consensus 137 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 216 (850)
++-.|+..|+...|..-+++.++.++. +..+|..+...|-+.|..+.|.+.|+...+..+. +-.+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 333444444444444444444444322 3344555555555555555555555555554332 44555666666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 043440 217 LKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294 (850)
Q Consensus 217 ~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (850)
+++|.+.|+++......+.. +|..++-+..+.|+++.|...|++.++..+. ...+...+.....+.|++..|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 66666666666654333332 6666666666666666666666666665432 33445556666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 295 KIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
+....+. ++..+.-..|+.--..|+.+.+-+.=.++.+
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6665543 5555555556666666666655555444444
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=7e-09 Score=92.55 Aligned_cols=198 Identities=14% Similarity=0.044 Sum_probs=128.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC 316 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (850)
+...|+-.|...|++..|..-+++.++.++. +..+|..+...|.+.|+.+.|.+.|++..... +.+-...|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4555666677777777777777777665422 45566677777777777777777777766642 224456666667777
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043440 317 TNGKVEKGYELYTQMKHMGIKP-SVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACN 395 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 395 (850)
.+|++++|...|++......-+ -..++..+.-+..+.|+.+.|...|++.++..|....+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777766532111 134555666666677777777777777777777666667777777777777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 396 LWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLE 437 (850)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (850)
.++.....+. ++..+.-..|+.--..|+-+.+.+.=..+.+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777666654 5666666666666666776666655555444
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=5e-09 Score=105.23 Aligned_cols=119 Identities=14% Similarity=-0.078 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 043440 144 RNLIDEAKEFYNKMNLKGL-GV--DSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVA 220 (850)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 220 (850)
.+..+.++..+.++..... .| ....|..+...+.+.|++++|...|++..+..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555553211 11 1233444444445555555555555555444332 344455555555555555555
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 221 CGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
...|+++++..+....++..++.++...|++++|.+.|+...+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555543322222444455555555555555555555444
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=5.2e-09 Score=105.14 Aligned_cols=152 Identities=8% Similarity=-0.142 Sum_probs=89.4
Q ss_pred hcCChhHHHHHHHHHhhCCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043440 108 RADRINDAVDCCNGMIERDI-IP--LLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEE 184 (850)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (850)
..+..+.++.-+.+++.... .| ....|..++..|...|++++|...|++..+..+. +...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 34555666666666664322 11 2344666666677777777777777776665432 45666667777777777777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 185 AEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMM 262 (850)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 262 (850)
|...|+...+..+. +..+|..+..++...|++++|++.|++..+..+.... .......+...+++++|...|++..
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 77777777665433 4556666666666677777777777777664433221 1111122334456666666665543
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=2.1e-08 Score=92.40 Aligned_cols=320 Identities=15% Similarity=0.102 Sum_probs=158.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIR-VMMRACL 177 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 177 (850)
+...+--+.+..++.+|++++..-.++.+. +......++.+|....++..|...|+++.+. .|...-|. --..++.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 334444444555666666665554444433 3334455556666666666666666655544 22222222 1233444
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHH
Q 043440 178 KEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRL 257 (850)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 257 (850)
+.+.+.+|+.+...|... +...+. +...-.......+++..+..+
T Consensus 90 ~A~i~ADALrV~~~~~D~-----~~L~~~------------------------------~lqLqaAIkYse~Dl~g~rsL 134 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-----PALHSR------------------------------VLQLQAAIKYSEGDLPGSRSL 134 (459)
T ss_pred HhcccHHHHHHHHHhcCC-----HHHHHH------------------------------HHHHHHHHhcccccCcchHHH
Confidence 555555555555444421 111111 111122223344555555555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043440 258 KDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKED-GLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGI 336 (850)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (850)
.++.... .+..+.+.......+.|++++|.+-|+...+. |..| ...|+.-+ +..+.|+++.|++...+++++|+
T Consensus 135 veQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 135 VEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 5554422 13333444444455666666666666666554 3332 33454333 33455666667666666666655
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHH
Q 043440 337 KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS-GVRPSVVSYNNM 415 (850)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l 415 (850)
+..+..-..+..--.....+..-+.+.... -+.++|.-...+.+.|+++.|.+.+..|..+ ....|++|...+
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sa------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSA------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHH------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 322211000000000000000111111111 1235666667777888888888888877643 234466666554
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 416 ILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQ 469 (850)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (850)
.-.- ..+++.+..+-+.-++..++ -...|+..++-.||+..-++-|-.++.+
T Consensus 284 Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 284 ALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 4322 23455555555666666533 3456788888888888888888777754
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=1.8e-07 Score=98.27 Aligned_cols=200 Identities=8% Similarity=-0.064 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043440 96 SGVFSYLLRSYVRADRINDAVDCCNGMIERDI-IPLL-RSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMM 173 (850)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (850)
...+..+...+...|+++.+...+.+...... .++. .........+...|++++|...+++..+..+. |...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 44566667777777888887777766544332 2222 12223345566778888888888887766322 3333332 1
Q ss_pred HHHH----hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcC
Q 043440 174 RACL----KEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHG 249 (850)
Q Consensus 174 ~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 249 (850)
..+. ..+..+.+...++..... ..........+...+...|++++|...+++..+..+.....+..++.++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 1222 234444444444431111 11123334445556667777777777777777755443336677777777777
Q ss_pred CHHHHHHHHHHHHhCCCC-CcH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 250 NLTEAFRLKDEMMSCGKP-MNL--VVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 250 ~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
++++|...+++.+..... ++. ..|..+...+...|++++|..++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777777777776654321 222 2344566677777777777777777643
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=4.3e-08 Score=90.42 Aligned_cols=313 Identities=14% Similarity=0.087 Sum_probs=193.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHH-HHHHHHHh
Q 043440 204 YRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVAT-SLMKGYYK 282 (850)
Q Consensus 204 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~ 282 (850)
+.+++..+.+..++.+|++++..-.+..+..-.....|+.+|....++..|...++++-.. .|...-|. .-...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 4455556667778888988888887766554448888899999999999999998888664 23333332 33456678
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043440 283 QGDLSSALELLDKIKEDGLSPNKVTFAVLIE--GCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAY 360 (850)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (850)
.+.+.+|+++...|... |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 88999999998888542 22222222222 3346788888888888765422 4445555556667889999999
Q ss_pred HHHHHHHHCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHH
Q 043440 361 KLFDEAVDSGI-ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNN-----MILAHCTVKNMDEAYSVFSE 434 (850)
Q Consensus 361 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~ 434 (850)
+-|..+.+.+- ....+||.. -+..+.|+++.|++...+++++|++..+ -++. .+..-. .|+ -..+...
T Consensus 165 qkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HP-ElgIGm~tegiDvrs-vgN---t~~lh~S 238 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHP-ELGIGMTTEGIDVRS-VGN---TLVLHQS 238 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCC-ccCccceeccCchhc-ccc---hHHHHHH
Confidence 99988888766 555566544 4455678889999998888888765221 1110 000000 000 0111111
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 043440 435 MLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAK-ISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPK 513 (850)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 513 (850)
. -...+|.-...+.+.|+++.|.+.+..|.-+. ...|++|...+.-. -..+++.+..+-+.-++..++- .
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-P 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-C
Confidence 1 12234444555677888888888877775332 24456665544211 1234455555555556655443 3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 043440 514 CLTYNSIIDGFVKEDDMISALTVYRE 539 (850)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 539 (850)
..||..++-.||+..-++-|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45677777778887777777766654
No 98
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.4e-10 Score=80.30 Aligned_cols=49 Identities=49% Similarity=0.925 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 043440 722 PNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKS 770 (850)
Q Consensus 722 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 770 (850)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=2.6e-07 Score=97.15 Aligned_cols=92 Identities=11% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHh
Q 043440 345 SLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVR-PSV--VSYNNMILAHCT 421 (850)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~ 421 (850)
.+...+...|++++|...+++.++..|.+...+..+...+...|++++|+..+++....... |+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34445556666666666666666666655556666666666666666666666665543211 111 123345555566
Q ss_pred cCCHHHHHHHHHHHH
Q 043440 422 VKNMDEAYSVFSEML 436 (850)
Q Consensus 422 ~g~~~~A~~~~~~~~ 436 (850)
.|++++|..++++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 666666666666654
No 100
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=2.3e-10 Score=79.24 Aligned_cols=49 Identities=39% Similarity=0.824 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043440 687 PDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYF 735 (850)
Q Consensus 687 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 735 (850)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.6e-08 Score=102.39 Aligned_cols=224 Identities=16% Similarity=0.136 Sum_probs=174.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 043440 208 IQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLS 287 (850)
Q Consensus 208 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 287 (850)
..-+.+.|++.+|.-.|+..++.+|..-.+|..|+......++-..|+..+.+.++.++. |..+...|...|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 445668899999999999999977665559999999999999999999999999987543 7888889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH---------HHHHhcCChhHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhcCCHH
Q 043440 288 SALELLDKIKEDGLSPNKVTFAVLI---------EGCCTNGKVEKGYELYTQMK-HMGIKPSVFIVNSLLCGFLKAQLLE 357 (850)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 357 (850)
+|++.|++.+...++ . .|.... ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|+++
T Consensus 371 ~Al~~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 999999998764221 0 110000 01111222344555555544 4454577888888888899999999
Q ss_pred HHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 358 EAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV-VSYNNMILAHCTVKNMDEAYSVFSEML 436 (850)
Q Consensus 358 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (850)
+|+..|+.++...|.|...||.|+..+....+.++|+..|.+.++. +|.- .++..|.-.|...|.+++|.+.|-..+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 5554 366667778889999999998887765
Q ss_pred h
Q 043440 437 E 437 (850)
Q Consensus 437 ~ 437 (850)
.
T Consensus 526 ~ 526 (579)
T KOG1125|consen 526 S 526 (579)
T ss_pred H
Confidence 4
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.02 E-value=7.6e-05 Score=80.41 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHH
Q 043440 518 NSIIDGFVKEDDMI---SALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGF 594 (850)
Q Consensus 518 ~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 594 (850)
+.|++.+-+.++.. +|+-+++.-.... +.|..+-..++..|+-.|-...|.++|..+.-+.++.|...|. +...+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 44555555555443 3333333333332 3344444555566666666666666666655444444443332 22334
Q ss_pred HccCCHHHHHHHHHHHHH
Q 043440 595 CRRRDMESACKLFAELLE 612 (850)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~ 612 (850)
...|++..+...++...+
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 445555555555555443
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.2e-08 Score=99.52 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=182.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHH
Q 043440 174 RACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTE 253 (850)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (850)
.-+.+.|++.+|.-.|+..++.++. +..+|..|...-...++-..|+..++++.+.++....+...|+-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 3457899999999999999998765 788999999999999999999999999999654444499999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHH---------HHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhH
Q 043440 254 AFRLKDEMMSCGKPMNLVVATSLM---------KGYYKQGDLSSALELLDKIKE-DGLSPNKVTFAVLIEGCCTNGKVEK 323 (850)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (850)
|+..++..+...++ ..|.... ..+.....+....++|-++.. .+..+|......|...|--.|++++
T Consensus 372 Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999998765322 0010000 111122234455666666654 4445788889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 324 GYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 324 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
|...|+.++... +-|...||.|...+....+.++|+..|.++++..|.-+.++..|+-.|...|.+++|.+.|-..+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999864 346789999999999999999999999999999999999999999999999999999999987764
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=3.7e-06 Score=100.53 Aligned_cols=266 Identities=11% Similarity=0.026 Sum_probs=130.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 043440 134 MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR 213 (850)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (850)
+......+...|++.+|.......... ..-..........+...|+++.+..+++.+.......++.........+..
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 444556667777777776655443211 000011111223345567777766666554211111122222333344456
Q ss_pred CCChhHHHHHHHHHHHCCCC------CC--h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRV------PS--R-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNL----VVATSLMKGY 280 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~------~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~ 280 (850)
.|++++|...+.++...-.. +. . ....+...+...|++++|...+++....-...+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 67777777777766442111 11 1 3333445566677777777777776552111111 2344555556
Q ss_pred HhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHhhHHHHHH
Q 043440 281 YKQGDLSSALELLDKIKEDGL-----SPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHM----GIK--P-SVFIVNSLLC 348 (850)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~ 348 (850)
...|++++|...+.+...... .+...++..+...+...|++++|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 667777777777766653210 011223444555666677777777766665432 111 0 1122333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 349 GFLKAQLLEEAYKLFDEAVDSGI-----ANVFTYNDLLAWLCKRGKVSEACNLWQKMV 401 (850)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (850)
.+...|++++|...+.+...... .....+..+...+...|++++|...+.+..
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555666666666665543211 112233334445555566666655555543
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=4.7e-06 Score=99.65 Aligned_cols=374 Identities=13% Similarity=0.056 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043440 97 GVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRAC 176 (850)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (850)
.++......|...|++.+|+.....+..... -..........+...|+++.+..+++.+.......+..........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3455556667778888777765544321100 01122333445667788888888877653221111222233444555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC------CC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---h--hHHHHHH
Q 043440 177 LKEDTTEEAEKYFRDAKALGVK------LD--ARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPS---R--VYTNLIG 243 (850)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~--~~~~l~~ 243 (850)
...|++++|...++.....-.. +. ......+...+...|++++|...+++........+ . +...++.
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 7789999999999877543111 11 11222334455678999999999999877422222 1 4566778
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHH
Q 043440 244 ACVKHGNLTEAFRLKDEMMSC----GKP-MNLVVATSLMKGYYKQGDLSSALELLDKIKED----GLS--P-NKVTFAVL 311 (850)
Q Consensus 244 ~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l 311 (850)
.+...|++++|...+++.... |.. ....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 888999999999999888642 111 11235566777888999999999999887552 211 1 22345556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC--CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCHhHH-----HHH
Q 043440 312 IEGCCTNGKVEKGYELYTQMKHMG--IKP--SVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI--ANVFTY-----NDL 380 (850)
Q Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~-----~~l 380 (850)
...+...|++++|...+.+..... ..+ ....+..+...+...|++++|...++.+..... .....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 667788899999999998876531 112 133444566677889999999999988755321 111101 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHhHHHHHH
Q 043440 381 LAWLCKRGKVSEACNLWQKMVSSGVRPSV---VSYNNMILAHCTVKNMDEAYSVFSEMLEK----RVTPN-VVTYSVLID 452 (850)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~ 452 (850)
+..+...|+.+.|...+............ ..+..+...+...|++++|...+.+.... |...+ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 23344467777777766554332111000 01223334455555566655555554432 11111 123333344
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 043440 453 GYFKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~ 472 (850)
.+.+.|+.++|...+.+..+
T Consensus 740 a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555544443
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=3.1e-08 Score=97.66 Aligned_cols=238 Identities=19% Similarity=0.145 Sum_probs=135.0
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHH
Q 043440 524 FVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESA 603 (850)
Q Consensus 524 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 603 (850)
+.-.|++..++.-.+ .....-..+......+.+++...|+++.++. ++... ..|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 344566666665444 2221111122334445566666776654432 22222 245555555554444433445555
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 604 CKLFAELLEVGLS-PNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 604 ~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
+.-+++....... .+..........+...|++++|++++++. .+.......+.+|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5544444332222 22333333344566678888888777542 3556666777788888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 683 KGIEPDIITYTVLINGLY----GKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 683 ~g~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
. ..|... ..++.++. -..++.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++++.++.++. |
T Consensus 160 ~--~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 I--DEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp C--SCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred c--CCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 3 445432 22333222 233588888888887765 4567788888888888888888888888888776654 6
Q ss_pred HHHHHHHHhhhhcCCchHH
Q 043440 759 DTTYDILVNGKSRSDTWAR 777 (850)
Q Consensus 759 ~~~~~~l~~~~~~~g~~~~ 777 (850)
+.+...++-+..+.|+..+
T Consensus 235 ~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 7777777777777777643
No 107
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=1.2e-06 Score=87.76 Aligned_cols=222 Identities=9% Similarity=0.071 Sum_probs=158.1
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH-
Q 043440 523 GFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKN-EIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDM- 600 (850)
Q Consensus 523 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~- 600 (850)
.+...+..++|+.++.++++.. +.+..+|+....++...| .+++++..++++.+.+.+ +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 3444567788888888888764 445556666666666666 578888888888876544 566777666556666653
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HH
Q 043440 601 -ESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEE---GKL----LT 672 (850)
Q Consensus 601 -~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 672 (850)
++++.+++++++...+ |..+|+....++.+.|+++++++.+.++++.+ +.|..+|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 6778888888887655 78888888888888899999999999998887 56777777776666554 222 46
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------
Q 043440 673 ASNLYSEMLSKGIEPDIITYTVLINGLYGK----GQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEG---------- 738 (850)
Q Consensus 673 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------- 738 (850)
+++...+++.. .+-|...|+.+...+... ++..+|.+.+.+..+.+ ..++.+...|++.|+...
T Consensus 202 el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 77777777774 244667888888888773 44567888888877643 226777888888887632
Q ss_pred --------CHHHHHHHHHHH
Q 043440 739 --------NLQEAFRLHNEM 750 (850)
Q Consensus 739 --------~~~~A~~~~~~~ 750 (850)
..++|.++++.+
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hccccccccHHHHHHHHHHH
Confidence 235677777776
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.91 E-value=0.00021 Score=77.14 Aligned_cols=531 Identities=14% Similarity=0.074 Sum_probs=257.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHH
Q 043440 177 LKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQ--ALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEA 254 (850)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 254 (850)
...+++..|+...+.+.+.. |+. .|..++. .+.+.|+.++|..+++.....+...+.+...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45678888888888877653 333 2333333 345788999999888777665555333888888899999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---------hhHH
Q 043440 255 FRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNG-K---------VEKG 324 (850)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A 324 (850)
..++++.... -|+......+-.+|.+.+.+.+-.+.--++.+. .+.+.+.+-++++...+.- . ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988775 355777777788888888777655555555443 3335555555555544321 1 1224
Q ss_pred HHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 325 YELYTQMKHMG-IKPSVFIVNSLLCGFLKAQLLEEAYKLFDE-AVDSGI-ANVFTYNDLLAWLCKRGKVSEACNLWQKMV 401 (850)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (850)
...++.+.+.+ .--+..-...-...+...|.+++|..++.. ..+.-+ .+...-+.-+..+...+++.+-.++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444432 111111111112233455667777766632 222222 444445555666666677777666666666
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 043440 402 SSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYT 481 (850)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 481 (850)
..|.. | |...+.. +++-+.....+|-... +...+..+...+...+...........+
T Consensus 254 ~k~~D-d---y~~~~~s------------v~klLe~~~~~~a~~~-------~s~~~~l~~~~ek~~~~i~~~~Rgp~LA 310 (932)
T KOG2053|consen 254 EKGND-D---YKIYTDS------------VFKLLELLNKEPAEAA-------HSLSKSLDECIEKAQKNIGSKSRGPYLA 310 (932)
T ss_pred HhCCc-c---hHHHHHH------------HHHHHHhcccccchhh-------hhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence 65432 1 2222211 1111111111110000 0111111222222222211100000011
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH-HHHCC----------CCCCHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCH
Q 043440 482 SNIIINGLCKAGRTSVAWDKLKK-MVEKG----------FIPKCLTYNSIIDGFVKEDDM-ISALTVYREMHESGLSPNV 549 (850)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~----------~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 549 (850)
.--+..-+..-|+.+++.-.|-+ .-... ..-+..-...+++.+....+. ....++..+-.
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~-------- 382 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHL-------- 382 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHH--------
Confidence 11111111122344333222211 11000 000111122333333322211 11111111100
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHH---Hc------CCCcCH---------hhHHHHHHHHHccCCHH---HH
Q 043440 550 VTYTILINGFCRKN-----EIDLALKMRNEMM---NE------GLQLDA---------TAYGSLINGFCRRRDME---SA 603 (850)
Q Consensus 550 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~---~~------~~~~~~---------~~~~~li~~~~~~g~~~---~A 603 (850)
..+..-.-.| .-+.-..++.+.. +. +.-|+. -+-+.|++.+-+.++.. +|
T Consensus 383 ----c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~ea 458 (932)
T KOG2053|consen 383 ----CVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEA 458 (932)
T ss_pred ----HHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0000000011 0111111221111 11 122222 23456777888877755 45
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 604 CKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK 683 (850)
Q Consensus 604 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 683 (850)
+-+++........ |..+--.++..|+-.|-+..|.++|+.+--+++..|..-|.. ..-+...|++..+...++.....
T Consensus 459 I~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 459 ITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred HHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHH
Confidence 5556555554322 555556788888888999999999988876666655544432 33456678888888888877763
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 684 GIEPDIITYTVLINGLYGKGQLENARKIF---DEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 684 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
+..+..--.-+|..-.+.|.+.+-.++. +++...--..-..+-+..++.++..++.++-...++.|.
T Consensus 537 -y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 537 -YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred -HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1111111122333445677766555443 223221001122334566777778888888888888886
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=0.00012 Score=74.26 Aligned_cols=187 Identities=17% Similarity=0.160 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043440 565 IDLALKMRNEMMNEGLQLDATAYGSLINGFCRRR---DMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDM 641 (850)
Q Consensus 565 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 641 (850)
.+++..+++..++.-..-+..+|..+.+.--..- ..+.....+++....-...-..+|..+++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666554322224444444443211111 3566666777766542222234666777777777779999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043440 642 HRKMINDGIPC-DLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCL 720 (850)
Q Consensus 642 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (850)
|.++.+.+..+ ++..+++++.-+| .++.+-|..+|+--+++ +..+..--...++-+...++-..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999886555 7778888888776 57889999999987764 444555556778888899999999999999998866
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 721 TP--NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 721 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
.| ...+|..++.-=..-|+...++++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66 4678999999999999999999998888653
No 110
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=1.3e-06 Score=87.35 Aligned_cols=204 Identities=13% Similarity=0.033 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh--hHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHG-NLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDL--SSAL 290 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~ 290 (850)
.++.++|+....++++..+....+|.....++...| ++++++..++++++.++. +..+|+...-.+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 355666666666666644333335655555566665 456666666666665432 445566555445455542 4566
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CC----HHHHHHHH
Q 043440 291 ELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA---QL----LEEAYKLF 363 (850)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~ 363 (850)
.+++++.+.. +.|..+|+...-++...|+++++++.++++++.+.. +...|+.....+.+. |. .++++...
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 6666666542 235556666666666666677777777766665432 444454444433332 11 24567777
Q ss_pred HHHHHCCCCCHhHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043440 364 DEAVDSGIANVFTYNDLLAWLCKR----GKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCT 421 (850)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (850)
.+++...|.|..+|+.+...+... +...+|...+.+..+.++. +......++..|+.
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 788888888888888887777763 3445577777776654322 45566666666664
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.8e-07 Score=92.24 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 043440 270 LVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC----TNGKVEKGYELYTQMKHMGIKPSVFIVNS 345 (850)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 345 (850)
.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 334444445555555555555555555442 2222 2222222222 122455555555554432 3345555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKV-SEACNLWQKMVS 402 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 402 (850)
++.++...|++++|.+++.+++..++.++.+...++......|+. +.+.+.+.++..
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555555666666555555555555555555555555555555 444555555554
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=0.00023 Score=72.31 Aligned_cols=210 Identities=12% Similarity=0.119 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043440 495 TSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVK---EDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKM 571 (850)
Q Consensus 495 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 571 (850)
.+++..+++..+..-...+..+|..+.+---. ....+.....++++...-...-..+|..+++.--+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 34556666665554333344444444432111 113556666666665543333334566677776777777778888
Q ss_pred HHHHHHcCCCc-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 572 RNEMMNEGLQL-DATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGI 650 (850)
Q Consensus 572 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (850)
|.++.+.+..+ .+.+.++++..||. ++.+-|.++|+--.+. ...++..-...++-+...|+-..|..+|++++..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88877766555 66777777776654 6777777777776654 222444445566667777777788888888877755
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhCCCHHH
Q 043440 651 PCDL--QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIE----PDIITYTVLINGLYGKGQLEN 707 (850)
Q Consensus 651 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~l~~~~~~~g~~~~ 707 (850)
+++. ..|..++.-=..-|++..+.++-+++... ++ +....-..+++.|.-.+.+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhcccccc
Confidence 5443 57777777777778888777777666542 22 111223344555555554443
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=2.6e-06 Score=95.09 Aligned_cols=236 Identities=10% Similarity=0.033 Sum_probs=168.9
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCC-Ch---hHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 187 KYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMG-RVP-SR---VYTNLIGACVKHGNLTEAFRLKDEM 261 (850)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 261 (850)
+-|++.....+ .+...|-..+......++.+.|.+++++++..= +.- +. +|.++++.-...|.-+...++|+++
T Consensus 1445 eDferlvrssP-NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSP-NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCC-CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 33444444432 245667777777778888888888888887642 211 11 7888888877888888888888888
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CH
Q 043440 262 MSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKP-SV 340 (850)
Q Consensus 262 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 340 (850)
-+.. .....|..|...|.+.+++++|.++|+.|.+. ..-....|...+..+.++.+-+.|..++.++++.-.+. .+
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 7742 23456788888888888888899998888876 33456788888888888888888888888887752211 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHH
Q 043440 341 FIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV--VSYNNMILA 418 (850)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~ 418 (850)
......+..-.+.|+-+.++.+|+..+...|.-...|+..++.-.+.|+.+.++.+|++....+..|-. ..|...+..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 444555666678888888888888888888877788888888888888888888888888887665433 244444443
Q ss_pred HHhcCCHH
Q 043440 419 HCTVKNMD 426 (850)
Q Consensus 419 ~~~~g~~~ 426 (850)
--+.|+-.
T Consensus 1681 Ek~~Gde~ 1688 (1710)
T KOG1070|consen 1681 EKSHGDEK 1688 (1710)
T ss_pred HHhcCchh
Confidence 33444433
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2.4e-06 Score=89.40 Aligned_cols=224 Identities=11% Similarity=0.039 Sum_probs=175.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043440 91 DFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIR 170 (850)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 170 (850)
+++|--..--.+...+...|-...|+.+|++. ..+.-++-+|...|+..+|..+..+-.++ +||+..|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 55666677778888899999999999999874 24556788899999999999988888775 77888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCC
Q 043440 171 VMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGN 250 (850)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 250 (850)
.+++......-++.|.++++..-.. +-..+.....+.++++++.+.|+...+.++-.-.+|..++-+..+.++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 9988877777788888887754322 222233333457899999999998888655544589999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 251 LTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQ 330 (850)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (850)
++.|.+.|...+... +.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999998887753 2366789999999999999999999999988865 33455677777778888999999999888
Q ss_pred HHHC
Q 043440 331 MKHM 334 (850)
Q Consensus 331 ~~~~ 334 (850)
+...
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 8653
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=1.7e-06 Score=84.57 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=133.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDII-PL-LRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDS--VT 168 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 168 (850)
+.....+..++..|...|++++|+..|+++....+. |. ...+..++.++.+.|++++|...|+++.+..+.... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677888999999999999999999998876654 22 246778899999999999999999999877543121 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHH
Q 043440 169 IRVMMRACLKE--------DTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTN 240 (850)
Q Consensus 169 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 240 (850)
+..+..++... |++++|...|+.+....+. +...+..+..... .... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~-------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------L-------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------H-------HHHHHH
Confidence 55566666554 7788888888888776433 2222222211100 0000 0 012345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043440 241 LIGACVKHGNLTEAFRLKDEMMSCGK--PMNLVVATSLMKGYYKQGDLSSALELLDKIKED 299 (850)
Q Consensus 241 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (850)
++..|.+.|++++|...++..+...+ +.....+..++.++.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67788999999999999999887532 224568889999999999999999999888764
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.6e-06 Score=83.21 Aligned_cols=183 Identities=14% Similarity=0.012 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--HHHHH
Q 043440 201 ARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNL--VVATS 275 (850)
Q Consensus 201 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 275 (850)
...+...+..+...|+++.|...|+++.+..+.... ++..++.++.+.|++++|...++++++..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344445555555556666666666555554432211 4455555666666666666666665553321111 13444
Q ss_pred HHHHHHhc--------CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 043440 276 LMKGYYKQ--------GDLSSALELLDKIKEDGLSPNK-VTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSL 346 (850)
Q Consensus 276 li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 346 (850)
+..++.+. |++++|.+.|+++.+. .|+. ..+..+..... ... ... .....+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 44444433 5566666666666653 2221 12211111100 000 000 001234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 347 LCGFLKAQLLEEAYKLFDEAVDSGI---ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
...+.+.|++++|+..++.+++..| ....++..++..+.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666777777777777766644 23456667777777777777777766666543
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=5.5e-06 Score=86.84 Aligned_cols=217 Identities=16% Similarity=0.131 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043440 480 YTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGF 559 (850)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (850)
..-..+...+...|-..+|..+|++.. .|...+.+|+..|+..+|..+..+.++. +|+...|..+++..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334455667777888888888887653 4566777888888888888888877774 77888888887777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 560 CRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAAL 639 (850)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 639 (850)
....-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.++- -..+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHH
Confidence 6666677777777665432 1112222233467888888888887776432 5667777777778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 640 DMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
+.|...+... |.+...||++..+|.+.++-.+|...++++++.+ ..+..+|...+....+-|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888887764 5566788888888888888888888888888865 44555677777777788888888888887765
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=1e-05 Score=90.55 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=147.7
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 221 CGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSC-GKPM---NLVVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
.+-|++.+...|.....|..-+......++.+.|++++++++.. ++.- -...|.++++.-.--|.-+...++|+++
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34445555543333337777777777888888888888877653 1111 2345677777666667777777788887
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCH
Q 043440 297 KEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI--ANV 374 (850)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 374 (850)
.+. --.-..|..|...|.+.+++++|.++++.|.+. +.....+|...+..+.++.+-+.|..++.++++.-| ...
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 663 212345677777888888888888888887764 234566777777777777777778888877777766 355
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043440 375 FTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTP 442 (850)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 442 (850)
......++.-.+.|+.+.+..+|+..+..-++ ....|+..++.-.+.|+.+.+..+|++++..++.|
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55666667777777777777777777765332 45677777777777777777777777777766554
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=6.7e-06 Score=75.75 Aligned_cols=156 Identities=18% Similarity=0.153 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043440 239 TNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTN 318 (850)
Q Consensus 239 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (850)
..+...+...|+-+.+..+....... .+.+....+..+....+.|++.+|...|.+.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 44444444444444444444433221 1223333444444444455555555555544443 233444444444444444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043440 319 GKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLW 397 (850)
Q Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 397 (850)
|++++|..-|.+..+.- .-+....+.+...+.-.|+++.|..++......++.|..+-..+.-.....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555544444444431 1123334444444444444444444444444444434444444444444444444444433
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=5.5e-06 Score=77.18 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=93.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC--HHH
Q 043440 631 NLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGL-YGKGQ--LEN 707 (850)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~g~--~~~ 707 (850)
..++.++++..+++.++.+ |.+...|..+...|...|++++|...++++.+.. +.+...+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 3566778888888877776 7788888888888888888888888888888753 33566777777764 56676 488
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 708 ARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 708 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
|.+++++.++.+. .+..++..++..+.+.|++++|+..|+++++..+
T Consensus 129 A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888542 2677788888888888888888888888887543
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=5.7e-06 Score=76.19 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 043440 274 TSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA 353 (850)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (850)
..+-..+.-.|+-+.+..+....... ...|......++....+.|++..|...+.+..... ++|..+|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 34444555555555555555554332 22233444445555666666666666666655543 44556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043440 354 QLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFS 433 (850)
Q Consensus 354 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (850)
|+++.|..-|.++.+..+.++...|.+...|.-.|+.+.|..++......+.. |...-..+.......|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666666666665555566666666666666666666666665554322 44444555555555666666665554
Q ss_pred HH
Q 043440 434 EM 435 (850)
Q Consensus 434 ~~ 435 (850)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=7.3e-06 Score=76.36 Aligned_cols=119 Identities=10% Similarity=0.160 Sum_probs=90.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 043440 597 RRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGL-LEEGK--LLTA 673 (850)
Q Consensus 597 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 673 (850)
.++.+++...+...++.++. |...|..+...|...|++++|+..|++..+.+ +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777777776543 77788888888888888888888888888875 66777887777764 56666 4888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 674 SNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 674 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
.+++++.++.+ +.+...+..+...+.+.|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888753 335667788888888888888888888888775
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=1.3e-05 Score=88.83 Aligned_cols=130 Identities=8% Similarity=-0.006 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC 316 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (850)
++..|+.+..+.|++++|..+++...+..+ .+...+..++..+.+.+++++|+..+++.....+ -+......+..++.
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~ 165 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHH
Confidence 444445555555555555555554444321 1333444444444445555555555544444311 12333344444444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 317 TNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDS 369 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (850)
+.|++++|..+|+++...+ +-+..++.++...+...|+.++|...|+++++.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555555444421 112344444444444444444444444444443
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=3.9e-06 Score=73.77 Aligned_cols=90 Identities=16% Similarity=0.038 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043440 626 INGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQL 705 (850)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 705 (850)
...+...|++++|...|+.++..+ |.+...|..+..++...|++++|...|+++++.. +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333444444444444444444433 3334444444444444444444444444444321 22333444444444444444
Q ss_pred HHHHHHHHHHHh
Q 043440 706 ENARKIFDEMNR 717 (850)
Q Consensus 706 ~~A~~~~~~~~~ 717 (850)
++|+..|++.++
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.1e-05 Score=71.28 Aligned_cols=259 Identities=16% Similarity=0.140 Sum_probs=152.8
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHH
Q 043440 524 FVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESA 603 (850)
Q Consensus 524 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 603 (850)
+.-.|++..++..-...... +.+...-..+..+|...|++..... ++.. +-.|.......+......-++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHH
Confidence 33345555555544443322 1233333344455555555433222 1211 1123334444444434434444443
Q ss_pred HH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 604 CK-LFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 604 ~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
+. +.+.+.......+......-+..|++.|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33 33333333333233333333455788888888888777621 222332334456677788888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 683 KGIEPDIITYTVLINGLYG----KGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 683 ~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
- .+..+.+.|..++.+ .+.+.+|.-+|++|-++ .+|+..+.+..+.++...|++++|..++++.+.+..+ +
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C
Confidence 2 345566666665543 45688999999999876 5688889999999999999999999999999988766 7
Q ss_pred HHHHHHHHhhhhcCCchHHhhccchhhhhhhhhhHHhhcCCchhhh
Q 043440 759 DTTYDILVNGKSRSDTWARKKEKMPACRKHHSMRIELLELPRMSNY 804 (850)
Q Consensus 759 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~y 804 (850)
+.+...++-+-.+.|+-.++. .+.+...+..+..+|=..|+
T Consensus 241 petL~Nliv~a~~~Gkd~~~~-----~r~l~QLk~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVT-----ERNLSQLKLSHPEHPFVKHL 281 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHH-----HHHHHHHHhcCCcchHHHHH
Confidence 888888887777888765543 34444444444444444443
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=6.9e-05 Score=68.50 Aligned_cols=188 Identities=21% Similarity=0.241 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHHH---cC-CCcCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043440 563 NEIDLALKMRNEMMN---EG-LQLDA-TAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEA 637 (850)
Q Consensus 563 g~~~~A~~~~~~~~~---~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 637 (850)
.+.++..+++.+++. .| ..++. ..|..++-+....|+.+.|..+++++...- +-+..+-..-+.-+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 355666666666553 22 33333 334445556667889999999999987763 2233333333334677899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 638 ALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 638 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
|+++|+.+++.+ |.|..++---+...-..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999987 778888888787888889989999999988886 788999999999999999999999999999987
Q ss_pred CCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 043440 718 KCLTP-NVFIFNTLIAGYFKEG---NLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 718 ~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~ 755 (850)
+.| ++-.+..+...+.-.| +++-|.++|.+.++..+
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 556 6666777888776655 56778999999988554
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=4.4e-05 Score=85.30 Aligned_cols=239 Identities=10% Similarity=0.097 Sum_probs=165.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVM 172 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (850)
+.+...+..|+..|...+++++|+++.+..++..+. ....|-.++..+...++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 456778899999999999999999999876665544 334455555577777776665444 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHH
Q 043440 173 MRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLT 252 (850)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 252 (850)
+.......++.-..-+...+... ..+..++..++.+|-+.|+.++|..+++++++.++....+.+.++..|... +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 33334444453333344444443 225557888888888899999999999999987744444888889888888 899
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 253 EAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNK-VTFAVLIEGCCTNGKVEKGYELYTQM 331 (850)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (850)
+|..++.+++.. |...+++.++.+++.++... .|+. ..+..+. +.+
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki 213 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKV 213 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHH
Confidence 998888877652 66677888888888888774 3332 2222222 222
Q ss_pred HHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHH
Q 043440 332 KHM-GIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLC 385 (850)
Q Consensus 332 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (850)
... |...-+.++-.+...|-..+++++++.+++.+++..+.|..+..-++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 221 222334456666777888889999999999999998888888888888886
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=2.3e-05 Score=87.43 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043440 200 DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKG 279 (850)
Q Consensus 200 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 279 (850)
+...+..++..+...+++++|.++.+...+..+..-..|..++..+.+.++..++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 5567888888888888999999988877774433333677777788888886666554 22 223
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043440 280 YYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEA 359 (850)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (850)
.....++.-..-+...+.. ..-+..++..++.+|-+.|+.++|..+++++++.. +.|+.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 3333344333333334444 23345577788888888899999999999888876 45788888888888888 88888
Q ss_pred HHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 360 YKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
++++.+++.. +...+++..+..+|.++...
T Consensus 169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhc
Confidence 8888887663 66667777777777777765
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=6.8e-06 Score=72.24 Aligned_cols=101 Identities=11% Similarity=-0.047 Sum_probs=46.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 043440 276 LMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQL 355 (850)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (850)
+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+.....+ +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444555555555555544431 2234444444444555555555555555544432 2234444444444444555
Q ss_pred HHHHHHHHHHHHHCCCCCHhHHH
Q 043440 356 LEEAYKLFDEAVDSGIANVFTYN 378 (850)
Q Consensus 356 ~~~A~~~~~~~~~~~~~~~~~~~ 378 (850)
+++|+..|+.+++..|.+...|.
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHH
Confidence 55555555555444444444443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=3.5e-05 Score=85.41 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=135.5
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHH-HHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCcHHHH
Q 043440 197 VKLDARAYRMVIQALCRKPNLKVA-CGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS--CGKPMNLVVA 273 (850)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~ 273 (850)
+..++.....+=.++...|..++| .+++.++.+ +..+.+.+..+...+-++.. ...+.++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQARQ--------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQ 89 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH--------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHH
Confidence 334455555555566666766655 445555443 23333333333222222211 1234567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 043440 274 TSLMKGYYKQGDLSSALELLDKIKEDGLSPN-KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLK 352 (850)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (850)
..|.....+.|++++|..+++...+. .|+ ......++.++.+.+++++|+..+++..... +.+......+..++.+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHH
Confidence 88888888888888888888888884 444 4566777788888888888888888888764 2245566677777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043440 353 AQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMI 416 (850)
Q Consensus 353 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 416 (850)
.|++++|..+|++++..++.+..++..+...+...|+.++|...|++..+.. .+....|+..+
T Consensus 167 ~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 167 IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8888888888888888777778888888888888888888888888887652 23344444443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=0.00024 Score=71.68 Aligned_cols=118 Identities=19% Similarity=0.102 Sum_probs=51.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHH
Q 043440 177 LKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFR 256 (850)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 256 (850)
...|++++|+..++.++..-+ .|++.+......+.+.++.++|.+.++++....+........++.+|.+.|++.+|+.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 344444444444444443322 1333344444444444444444444444444332221244444444444444444444
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 257 LKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
+++...... +.|+..|..|..+|...|+..+|..-..+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 444444332 224444444444444444444444444333
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=2e-07 Score=57.50 Aligned_cols=32 Identities=50% Similarity=0.854 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 719 CLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEM 750 (850)
Q Consensus 719 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (850)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.8e-07 Score=57.68 Aligned_cols=32 Identities=47% Similarity=0.932 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043440 684 GIEPDIITYTVLINGLYGKGQLENARKIFDEM 715 (850)
Q Consensus 684 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (850)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00011 Score=67.11 Aligned_cols=190 Identities=17% Similarity=0.128 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHHHhh---CC-CCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHH
Q 043440 179 EDTTEEAEKYFRDAKA---LG-VKLDARA-YRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTE 253 (850)
Q Consensus 179 ~g~~~~A~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (850)
..+.++..+++..+.. .| ..++.++ |-.+.-+....|+.+.|...+.++...-+....+-..-+..+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3455555555555543 22 3344443 44555566677777778777777776553333344444555666777777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 254 AFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
|+++++.++..+ |.|.+++-.-+-..-..|+.-+|++-+....+. ...|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777655 336666666566666667777777777776665 556777777777777777777777777777765
Q ss_pred CCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 043440 334 MGIKPSVFIVNSLLCGFLKAQ---LLEEAYKLFDEAVDSGI 371 (850)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 371 (850)
.. |-+...+..+...+.-.| ++.-|.++|.+.++..+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 42 223333444444443322 44556666666666544
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00019 Score=72.45 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=76.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043440 314 GCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEA 393 (850)
Q Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 393 (850)
.+...|++++|+..++.+++. .+.|+.........+.+.++..+|.+.+++++...|.....+..+.++|.+.|+..+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 344556666666666665543 2223444444455556666666666666666666555555556666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 394 CNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENA 473 (850)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 473 (850)
+.+++........ |...|..|..+|...|+..++..-.. ..|...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 6666665554322 55556666666666655554443332 2334455556665555555443
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00033 Score=64.72 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=79.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cC
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCT----VK 423 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 423 (850)
..|+..|++++|++..... .+..+.-.=+..+.+..+++-|.+.+++|.+. .+..+.+.|..++.+ .+
T Consensus 116 ~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 4455666666666665541 12333333344555666666677766666653 133455545444442 34
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhH
Q 043440 424 NMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSV 497 (850)
Q Consensus 424 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 497 (850)
.+.+|.-+|+++.++ .+|+..+.+....++...|++++|..+++...... ..++.+...++..-...|...+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChH
Confidence 566677777777664 45666666666667777777777777777776654 3345555555554444554433
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=1.3e-05 Score=70.41 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=74.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043440 641 MHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCL 720 (850)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (850)
.+++++... |.+......++..+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 345555543 3344556666677777777777777777776642 3456667777777777777777777777776643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 721 TPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 721 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
+.+...+..++.+|...|++++|...|++.++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2356667777777777778888877777777643
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=2.7e-05 Score=68.35 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 606 LFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGI 685 (850)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 685 (850)
.+++.....+. +......++..+...|++++|.+.|+++...+ +.+...+..+...+...|++++|..++++.++.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34444444222 33445566666777777777777777777665 5566777777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 686 EPDIITYTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 686 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
+.+...+..+..++...|++++|.+.|++..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566667777777777777777777777774
No 139
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00039 Score=68.28 Aligned_cols=280 Identities=14% Similarity=0.010 Sum_probs=152.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLK 178 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (850)
.......+.++.++.+|+..+..+++..+. +...|..-+..+...|++++|..-.++-...... .........+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 334556777888999999999888887766 3555666677777778888887776655433211 22244444455555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh--hHH-HHHHHHHhcCCHHHHH
Q 043440 179 EDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR--VYT-NLIGACVKHGNLTEAF 255 (850)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~-~l~~~~~~~g~~~~A~ 255 (850)
.++..+|...++.-. .+ ....|+..++........++. .+. .-..++.-.|++++|.
T Consensus 130 ~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 555555555444110 00 111122222222222222221 111 1233344455555555
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------------HHHHHHHHHHhcCChh
Q 043440 256 RLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKV-------------TFAVLIEGCCTNGKVE 322 (850)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~ 322 (850)
+.--..++.+. .+......-..++.-.++.+.|...|++.+.. .|+.. .+..-..-..+.|++.
T Consensus 190 ~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 190 SEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 55555544321 12222222222333455555566666555542 22211 1111223345677777
Q ss_pred HHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 323 KGYELYTQMKHMG---IKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQK 399 (850)
Q Consensus 323 ~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (850)
.|.+.|.+.+..+ .+++...|.....+..+.|+..+|+.--+.++..++.-..++..-..++...++|++|++-|++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776643 2334455555566667778888888877777776555555566666677777778888888877
Q ss_pred HHhC
Q 043440 400 MVSS 403 (850)
Q Consensus 400 ~~~~ 403 (850)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7765
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=4.9e-05 Score=67.24 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN--LVVATSLMKGYYKQGDLSS 288 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 288 (850)
.++...+...++.+.+..+.... +...++..+...|++++|...|+.++.....++ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45556665556666555443322 444455556666666666666666655442222 1233445555666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 289 ALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQ 330 (850)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (850)
|+..++.... .......+..+..++.+.|+.++|+..|+.
T Consensus 104 Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666655322 122333444555566666666666666554
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=8e-05 Score=65.88 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 043440 622 YNSMINGFRNLGNMEAALDMHRKMINDGIPCD---LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPD--IITYTVLI 696 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l~ 696 (850)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+..+.....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3677777777777777763 333 23444456677778888888888888877542222 12344567
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEM 750 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (850)
..+...|++++|+..++..... ......+...+++|...|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888664332 224556777788888888888888888764
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00048 Score=67.68 Aligned_cols=183 Identities=13% Similarity=-0.005 Sum_probs=121.3
Q ss_pred hhHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----
Q 043440 585 TAYGSL-INGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYT----- 658 (850)
Q Consensus 585 ~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----- 658 (850)
..|..+ ..++.-.|++++|...-..+.+.... +......-..++.-.++.+.|...|++.+..+ |+....-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh
Confidence 344333 24567788889988888888776432 33333333444566788899999999988774 4332211
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHH
Q 043440 659 --------TLIAGLLEEGKLLTASNLYSEMLSK---GIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPN-VFI 726 (850)
Q Consensus 659 --------~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 726 (850)
.=..-..+.|++.+|.+.+.+.+.. ...|+...|.....+..+.|+..+|+.-.+...+. .|. ...
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syika 323 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKA 323 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHH
Confidence 1123346789999999999999972 23344556777777888999999999999999873 331 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHhhhhcC
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHNEMLDKGLVP-DDTTYDILVNGKSRS 772 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 772 (850)
|-.-+.++...++|++|++.|++..+..-.+ +..++.....++.++
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 5555667778899999999999987643322 233444444444443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00021 Score=73.13 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043440 623 NSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGK 702 (850)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 702 (850)
.+|+..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++++.++. .+.+..........|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 344445555666777777777766653 332 233555565666666777777776653 234555555566666777
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 703 GQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 703 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
++++.|+++.+++.+. .| +..+|..|+.+|...|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777763 34 55567777777777777777777766664
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.01 E-value=0.0014 Score=65.53 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 273 ATSLMKGYYKQGDLSSALELLDKIKEDGLS-----PNKV-TFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
+..++..+.+.|++++|.++|+++...-.. .+.. .|...+-++...||...|...++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666666665543111 1111 122233344455666666666666554
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.0014 Score=65.41 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=68.6
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-CChhHHHHHHH
Q 043440 216 NLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ-GDLSSALELLD 294 (850)
Q Consensus 216 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~ 294 (850)
++++|...++++.. .|...|++..|-..+.++ ...|... |++++|++.|+
T Consensus 89 ~~~~Ai~~~~~A~~--------------~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~ 139 (282)
T PF14938_consen 89 DPDEAIECYEKAIE--------------IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQ 139 (282)
T ss_dssp THHHHHHHHHHHHH--------------HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------------HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHH
Confidence 55566555555433 555666666555544433 3344444 56666666666
Q ss_pred HHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----Hh-hHHHHHHHHHhcCCHHHHHHHH
Q 043440 295 KIKED----GLS-PNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPS-----VF-IVNSLLCGFLKAQLLEEAYKLF 363 (850)
Q Consensus 295 ~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~g~~~~A~~~~ 363 (850)
+..+. |.. .-...+..++..+.+.|++++|.++|+++.......+ +. .+...+-++...||...|...|
T Consensus 140 ~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 140 KAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65432 100 0122445566778888999999999988876433221 11 1222333555667777777777
Q ss_pred HHHHHCCC
Q 043440 364 DEAVDSGI 371 (850)
Q Consensus 364 ~~~~~~~~ 371 (850)
++.....|
T Consensus 220 ~~~~~~~~ 227 (282)
T PF14938_consen 220 ERYCSQDP 227 (282)
T ss_dssp HHHGTTST
T ss_pred HHHHhhCC
Confidence 77766554
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00026 Score=72.52 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=95.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043440 586 AYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLL 665 (850)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 665 (850)
...+|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++.+... |.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666677788888888888888763 44 34457777777888888888888888764 567777777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 666 EEGKLLTASNLYSEMLSKGIEPDI-ITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 666 ~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
+.++++.|+++.+++.+. .|+. .+|..|..+|.+.|++++|+-.++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888889999999988884 5544 4888899999999999999888877653
No 147
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.98 E-value=0.00011 Score=71.72 Aligned_cols=284 Identities=15% Similarity=0.079 Sum_probs=152.0
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH--hC--CC-CCCHHHHHHHHHH
Q 043440 105 SYVRADRINDAVDCCNGMIERDIIPLL----RSMNSVLKALVRRNLIDEAKEFYNKMN--LK--GL-GVDSVTIRVMMRA 175 (850)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~-~~~~~~~~~l~~~ 175 (850)
-+++.|+.+..+.+|+.+++.|.. |. .+|..|+++|+-.+++++|+++...-+ .+ |- .....+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467899999999999999988866 44 347788899999999999998765321 11 10 1123334445555
Q ss_pred HHhcCCHHHHHHHHHHH----hhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCC
Q 043440 176 CLKEDTTEEAEKYFRDA----KALGVK-LDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGN 250 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 250 (850)
+--.|.+++|..+..+- .+.|-. ....++..+...|...|+--.-.. -.+.|-.+..+-. .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~~----------a 170 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVTS----------A 170 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHHH----------H
Confidence 56667777776654332 222210 123345555555554442100000 0000001111000 1
Q ss_pred HHHHHHHHHHHHh----CCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCC
Q 043440 251 LTEAFRLKDEMMS----CGKP-MNLVVATSLMKGYYKQGDLSSALELLDKIKE----DGLS-PNKVTFAVLIEGCCTNGK 320 (850)
Q Consensus 251 ~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~ 320 (850)
++.|.++|.+-++ .|.. ..-.+|..|...|.-.|+++.|+...+.-++ .|.. ....++..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 1223333322111 1100 1123455666666666666666655443221 1211 123456667777777777
Q ss_pred hhHHHHHHHHHHH----CCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCHhHHHHHHHHHHhcCC
Q 043440 321 VEKGYELYTQMKH----MGIK-PSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSG------IANVFTYNDLLAWLCKRGK 389 (850)
Q Consensus 321 ~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~ 389 (850)
++.|.+.|+.... .|-. ......-+|...|.-..++++|+.++.+-+... .....++-+|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 7777777665432 2211 123344566677777777777777776543321 1455677788888888888
Q ss_pred HHHHHHHHHHHHhC
Q 043440 390 VSEACNLWQKMVSS 403 (850)
Q Consensus 390 ~~~A~~~~~~~~~~ 403 (850)
.+.|+.+.+.-++.
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777665543
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.0089 Score=62.90 Aligned_cols=204 Identities=11% Similarity=0.044 Sum_probs=114.2
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHHCCC
Q 043440 267 PMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLI----------EGCCTNGKVEKGYELYTQMKHMGI 336 (850)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~ 336 (850)
.|.+..|..+.....+.-.++-|...|-+... -+.......|- ..-.--|++++|.++|-.|-+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 46778888888777777777777777766532 11111111111 111223777777777766655421
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 043440 337 KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI--ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNN 414 (850)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 414 (850)
.+..+.+.|++-...++++.--...- .-..+|+.+...+.....+++|.+.|..-... ..
T Consensus 766 ---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 24455566666666665544221111 22456777777777777777777777654321 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 043440 415 MILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGR 494 (850)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 494 (850)
.+..+.+...+++-+.+-..+ +.+....-.+.+++.+.|.-++|.+.|-+.. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 455555555555444433333 3355556667777777777777777664322 11 123445666667
Q ss_pred hhHHHHHHHHH
Q 043440 495 TSVAWDKLKKM 505 (850)
Q Consensus 495 ~~~A~~~~~~~ 505 (850)
|.+|.++-+..
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 77777665554
No 149
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.0028 Score=55.20 Aligned_cols=133 Identities=13% Similarity=-0.028 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh--hHHH
Q 043440 163 GVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR--VYTN 240 (850)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 240 (850)
.|++..-..|..++.+.|++.+|...|++....-+..|....-.+.++....+++..|...++.+-+.++.-.. ....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45666667777777788888888888887776556667777777777877888888888888887775532222 6667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 241 LIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIK 297 (850)
Q Consensus 241 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 297 (850)
+.+.|...|++++|+..|+..+..- |+..........+.++|+.++|..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 7788888888888888888887753 333333334455667777777665554443
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.0006 Score=62.47 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN--LVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEG 314 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (850)
.+..++..+...|++++|...|++.++....+. ...+..++..+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 556666666667777777777776665432221 3456666666777777777777777766632 2234455555556
Q ss_pred HHhcCChhHHHH
Q 043440 315 CCTNGKVEKGYE 326 (850)
Q Consensus 315 ~~~~g~~~~A~~ 326 (850)
+...|+...+..
T Consensus 116 ~~~~g~~~~a~~ 127 (172)
T PRK02603 116 YHKRGEKAEEAG 127 (172)
T ss_pred HHHcCChHhHhh
Confidence 666665544443
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00014 Score=68.74 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=59.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 043440 664 LLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQE 742 (850)
Q Consensus 664 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 742 (850)
..+.+++++|+..|.++++. .+.|.+.|..-..+|++.|.++.|++-.+..+. +.| -..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 44566666666666666663 133555556666666666666666666666666 334 34556666666666677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q 043440 743 AFRLHNEMLDKGLVPDDTTYDI 764 (850)
Q Consensus 743 A~~~~~~~~~~g~~p~~~~~~~ 764 (850)
|++.|++.++ +.|+..+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7666666665 4555555554
No 152
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.88 E-value=0.038 Score=55.68 Aligned_cols=204 Identities=12% Similarity=0.165 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhh-------HHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCC
Q 043440 550 VTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATA-------YGSLINGFCR----RRDMESACKLFAELLEVGLSPN 618 (850)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~ 618 (850)
.++..++....+.++...|.+.+.-+.... |+... -..+.+..+. ..+...-+.++..+...++..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr- 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR- 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-
Confidence 345555566666667777766666555432 22111 1112222221 112333455555555543321
Q ss_pred HHHHHHH---HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCC
Q 043440 619 TVVYNSM---INGFRNLGN-MEAALDMHRKMINDGIPCDLQTYTTLI----AGLLE---EGKLLTASNLYSEMLSKGIEP 687 (850)
Q Consensus 619 ~~~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~g~~~ 687 (850)
.....-| +.-+-+.|. -++|+++++.+++-. +-|...-|.+. ..|.+ ...+.+-+.+-+-..+.|++|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1111112 223445555 788888888888763 34444333322 12211 112222223333334567766
Q ss_pred CH----HHHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043440 688 DI----ITYTVLING--LYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTT 761 (850)
Q Consensus 688 ~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 761 (850)
-. ..-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....+++||..+++.+ +|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhh
Confidence 33 345555554 5578999999888777777 7799999999999999999999999999885 456666
Q ss_pred HHH
Q 043440 762 YDI 764 (850)
Q Consensus 762 ~~~ 764 (850)
+..
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 655
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.88 E-value=0.0027 Score=61.35 Aligned_cols=176 Identities=14% Similarity=0.011 Sum_probs=88.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH-
Q 043440 206 MVIQALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYY- 281 (850)
Q Consensus 206 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~- 281 (850)
.....+...|++++|+..|+++....+.+.. +...++.++.+.+++++|...+++.++..+......+.....+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444445667777777777777665554433 345666667777777777777777766533322222222222221
Q ss_pred -hcC---------------C---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh
Q 043440 282 -KQG---------------D---LSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFI 342 (850)
Q Consensus 282 -~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 342 (850)
..+ + ..+|+..|+++++. -|+.. -..+|...+..+... =..-
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH----HHHH
Confidence 111 1 22344555555542 22321 122232222222110 0001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 343 VNSLLCGFLKAQLLEEAYKLFDEAVDSGI---ANVFTYNDLLAWLCKRGKVSEACNLWQKM 400 (850)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (850)
-..+...|.+.|.+..|+.-|+.+++..| ....+...++.+|...|..++|......+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11344556666666667777777666665 23345555666666666666666655444
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.88 E-value=0.00045 Score=58.92 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 043440 656 TYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPD----IITYTVLINGLYGKGQLENARKIFDEMNRKCLTP--NVFIFNT 729 (850)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ 729 (850)
++..++..+.+.|++++|.+.++++++.. |+ ...+..+..++.+.|++++|.+.|+++....... ...++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44556666667777777777777776532 22 2355566777777777777777777776642111 2455677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 730 LIAGYFKEGNLQEAFRLHNEMLDKGLV 756 (850)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~~~~~g~~ 756 (850)
++.++.+.|++++|...++++++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 777777777777787777777776543
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.86 E-value=2.8e-05 Score=48.93 Aligned_cols=33 Identities=48% Similarity=0.889 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 726 IFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888776
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.82 E-value=0.0016 Score=70.19 Aligned_cols=119 Identities=12% Similarity=0.050 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCH
Q 043440 635 MEAALDMHRKMINDGIPCDLQTYTTLIAGLLEE--------GKLLTASNLYSEMLSK-GIEPDIITYTVLINGLYGKGQL 705 (850)
Q Consensus 635 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~ 705 (850)
.+.|+++|+++++.+ |.....|..+..++... .++..+.+..++.... ....+...|..+.-.....|++
T Consensus 358 ~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 358 LNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 445556666665553 33334444433333221 1233444444444432 1234556777777777778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 706 ENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLV 756 (850)
Q Consensus 706 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 756 (850)
++|...++++++. .|+...|..++.++...|+.++|.+.|++.....+.
T Consensus 437 ~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 437 DEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999984 478888999999999999999999999999875544
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00034 Score=56.77 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043440 657 YTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFK 736 (850)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 736 (850)
+..++..+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.|++..+.. +.+..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666666777777776666532 2233556666666666677777777777766642 2244566677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 043440 737 EGNLQEAFRLHNEMLD 752 (850)
Q Consensus 737 ~g~~~~A~~~~~~~~~ 752 (850)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777777654
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00061 Score=58.06 Aligned_cols=92 Identities=11% Similarity=-0.040 Sum_probs=37.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCC--h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHH
Q 043440 207 VIQALCRKPNLKVACGLVKEMRDMGRVPS--R-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPM--NLVVATSLMKGYY 281 (850)
Q Consensus 207 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 281 (850)
.+..+.+.|++++|...|.++....+... . ++..++.++.+.|+++.|...++.+....+.. ...++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33334444444444444444443322111 1 33344444444444444444444444321110 1223444444444
Q ss_pred hcCChhHHHHHHHHHHH
Q 043440 282 KQGDLSSALELLDKIKE 298 (850)
Q Consensus 282 ~~g~~~~A~~~~~~~~~ 298 (850)
+.|++++|...++++.+
T Consensus 88 ~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HhCChHHHHHHHHHHHH
Confidence 44444444444444444
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.75 E-value=0.00044 Score=67.70 Aligned_cols=285 Identities=16% Similarity=0.120 Sum_probs=125.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHH--hC--CC-CCCHHhHHHHH
Q 043440 381 LAWLCKRGKVSEACNLWQKMVSSGVRPSVV----SYNNMILAHCTVKNMDEAYSVFSEML--EK--RV-TPNVVTYSVLI 451 (850)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~-~~~~~~~~~l~ 451 (850)
..-+|+.|+....+.+|+..++.|.. |.. .|..+.++|.-.+++++|++++..=+ .+ |- .-...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 44577888888888888888877654 433 35555566666677777776654311 11 00 00122233344
Q ss_pred HHHHhcCCHHHHHHHHHHH----HhCCC-CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 043440 452 DGYFKQGDAERAFDVLDQM----ENAKI-SPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVK 526 (850)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 526 (850)
+.+--.|.+++|+-...+- .+.|- ......+..+...|...|+.-... .-.+.|-.++.++
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT---------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH----------
Confidence 4444455566655433221 22221 111223333444444333210000 0000000000000
Q ss_pred CCChHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC-cCHhhHHHHHHHHHc
Q 043440 527 EDDMISALTVYREMHE----SGL-SPNVVTYTILINGFCRKNEIDLALKMRNEMMN----EGLQ-LDATAYGSLINGFCR 596 (850)
Q Consensus 527 ~~~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~ 596 (850)
..++.|.++|.+-++ .|- -.-...|..|.+.|.-.|+++.|+...+.-+. -|-. ....++..+.+++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 012223333322111 110 00112233444444445566666555443221 1110 112344555566666
Q ss_pred cCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHh
Q 043440 597 RRDMESACKLFAELLEV----GL-SPNTVVYNSMINGFRNLGNMEAALDMHRKMIND-----GIPCDLQTYTTLIAGLLE 666 (850)
Q Consensus 597 ~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 666 (850)
.|+++.|.+.|+..... |- .....+..+|...|.-..++++|+.++.+-+.. +..-...++-+|..++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 66666666666554321 11 112334455666666666666666666553321 112234455566666666
Q ss_pred cCCHHHHHHHHHHHH
Q 043440 667 EGKLLTASNLYSEML 681 (850)
Q Consensus 667 ~g~~~~A~~~~~~~~ 681 (850)
.|..++|+.+.+..+
T Consensus 328 lg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 328 LGEHRKALYFAELHL 342 (639)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666666665555443
No 160
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.75 E-value=0.053 Score=53.43 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=110.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHH
Q 043440 282 KQGDLSSALELLDKIKEDGLSPNKVTFAVLIEG--CCTNGKVEKGYELYTQMKHMGIKPSVFIV--NSLLCGFLKAQLLE 357 (850)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~ 357 (850)
-.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|.. .|..... ..|.-.--+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 356667777766665433 44455555555543 3456888888888888876 2322211 11222223678888
Q ss_pred HHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChh--hHHHHHHHHH---hcCCHHHHHHH
Q 043440 358 EAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG-VRPSVV--SYNNMILAHC---TVKNMDEAYSV 431 (850)
Q Consensus 358 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~g~~~~A~~~ 431 (850)
.|+.+-+......|.-..++...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-. -.-+...|...
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 88888888888888788888999999999999999999988766532 233332 1222222111 11233344444
Q ss_pred HHHHHhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043440 432 FSEMLEKRVTPNVVT-YSVLIDGYFKQGDAERAFDVLDQMENAKISP 477 (850)
Q Consensus 432 ~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 477 (850)
-.+..+ +.||..- -..-...+.+.|+..++-.+++.+-+....|
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 433333 2334322 1223445666666666666666666654333
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00045 Score=65.38 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=54.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043440 594 FCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTA 673 (850)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 673 (850)
..+.+++++|+..|.+.++..+. |.+.|..-..+|++.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 45556666666666666655333 55555555566666666666666666665554 33345566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 043440 674 SNLYSEMLSKGIEPDIITY 692 (850)
Q Consensus 674 ~~~~~~~~~~g~~~~~~~~ 692 (850)
++.|++.++ +.|+-.+|
T Consensus 169 ~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHhhhc--cCCCcHHH
Confidence 666666655 45554433
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.00076 Score=66.99 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043440 620 VVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLE-EGKLLTASNLYSEMLSKGIEPDIITYTVLING 698 (850)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 698 (850)
.+|..++....+.+..+.|..+|+++.+.+ ..+...|...+..-.. .++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888999999999998653 3345556555555333 56667799999999886 67788889999999
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 043440 699 LYGKGQLENARKIFDEMNRKCLTPNV---FIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKS 770 (850)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 770 (850)
+.+.|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+.+.+.++.+++.+. -|+...+..+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHhh
Confidence 99999999999999999875 43332 58999999999999999999999999874 345555555666554
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.72 E-value=5.6e-05 Score=47.12 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043440 725 FIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVP 757 (850)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 757 (850)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666665
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.71 E-value=0.00077 Score=58.13 Aligned_cols=86 Identities=9% Similarity=-0.039 Sum_probs=35.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043440 594 FCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTA 673 (850)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 673 (850)
+...|++++|..+|+.+....+. +..-|..|..++...|++++|+..|..+...+ +.|+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 33444444444444444433221 33333444444444444444444444444443 33344444444444444444444
Q ss_pred HHHHHHHH
Q 043440 674 SNLYSEML 681 (850)
Q Consensus 674 ~~~~~~~~ 681 (850)
.+.|+..+
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 44444433
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00056 Score=55.44 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=21.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKM 400 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (850)
..+...+++++|.+.|+...+..+.+..++..++..+...|+++.|...+...
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 42 AAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333334444444444433333333333344444444444444444444433
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.71 E-value=0.0053 Score=57.81 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 204 YRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSC 264 (850)
Q Consensus 204 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 264 (850)
+-.....+...|++.+|+..|+.+....+.... +...++.++.+.|+++.|...+++.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444555677777777777777766554333 6667777777777777777777776664
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.0072 Score=58.39 Aligned_cols=185 Identities=9% Similarity=-0.005 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043440 95 DSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRS--MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVM 172 (850)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (850)
+.......+..+...|++++|+..|+.+....+.+.... .-.++.++.+.+++++|...|++..+.-+......+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 455566677778889999999999999988777654322 345788899999999999999999888554333344443
Q ss_pred HHHHHh--cC---------------C---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 043440 173 MRACLK--ED---------------T---TEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGR 232 (850)
Q Consensus 173 ~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 232 (850)
+.+++. .+ + ..+|...|+.+++.-+ ...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP---------------~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP---------------NSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc---------------CChhHHHHHHHHHHHHHH--
Confidence 333321 11 1 2344455555555422 222233343333333220
Q ss_pred CCChhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 233 VPSRVYTNLIGACVKHGNLTEAFRLKDEMMSC--GKPMNLVVATSLMKGYYKQGDLSSALELLDKIK 297 (850)
Q Consensus 233 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 297 (850)
-..--..++..|.+.|.+..|+.-++.+++. +.+....+...++.+|.+.|..++|.+....+.
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0012235677788889998888888888774 223344567788888989999999888776654
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=8.7e-05 Score=58.31 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=8.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 043440 660 LIAGLLEEGKLLTASNLYSE 679 (850)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~ 679 (850)
++.+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.11 Score=55.19 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043440 249 GNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKED-GLSPNKVTFAVLIEGCCTNGKVEKGYEL 327 (850)
Q Consensus 249 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (850)
|++++|.+++-++-++ | ..|..+.+.|++-...++++.--.. +...-..+|+.+...+.....+++|.+.
T Consensus 748 g~feeaek~yld~drr----D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR----D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchh----h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555332 1 1244455556665555544331100 0011123566666666666666666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043440 328 YTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRP 407 (850)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 407 (850)
|..-.. ....+.++.+..++++-..+-+.+. .+....-.+.+++...|.-++|.+.|-+--. |
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLP----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c
Confidence 654321 1123444555545544444333332 3455556666777777777777666544321 1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 408 SVVSYNNMILAHCTVKNMDEAYSVFSE 434 (850)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (850)
...+..|...++|.+|.++-+.
T Consensus 882 -----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 -----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1234455555666666665443
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=7.8e-05 Score=58.57 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043440 667 EGKLLTASNLYSEMLSKGI-EPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFR 745 (850)
Q Consensus 667 ~g~~~~A~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 745 (850)
.|++++|+.+++++++... .++...+..+..++.+.|++++|..++++ .+.+. .+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788888888888887432 12445566688889999999999999988 33211 234555566888899999999998
Q ss_pred HHHH
Q 043440 746 LHNE 749 (850)
Q Consensus 746 ~~~~ 749 (850)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.012 Score=51.41 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCHhHHHHH
Q 043440 303 PNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI--ANVFTYNDL 380 (850)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l 380 (850)
|+...-..|..++...|+..+|...|.+....-+-.|......+.++....++...|...++++.+..| ..+.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444455555556666666666666555533334445555555555555555555555555555544 333444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 043440 381 LAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
...|...|++.+|..-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 5555555555555555555554
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.0012 Score=56.87 Aligned_cols=88 Identities=9% Similarity=-0.018 Sum_probs=45.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043440 349 GFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEA 428 (850)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 428 (850)
.+...|++++|.++|+-+...+|.+..-|..|..++-..|++++|+..|.......+. |...+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 3344555555555555555555555555555555555555555555555555544332 444444455555555555555
Q ss_pred HHHHHHHHh
Q 043440 429 YSVFSEMLE 437 (850)
Q Consensus 429 ~~~~~~~~~ 437 (850)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554444
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.0012 Score=68.19 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=47.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN 707 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 707 (850)
.+...|++++|++.|+++++.+ +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3444555555555555555543 4445555555555555555555555555555531 2234455555555555555555
Q ss_pred HHHHHHHHHh
Q 043440 708 ARKIFDEMNR 717 (850)
Q Consensus 708 A~~~~~~~~~ 717 (850)
|+..|++.++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.0031 Score=52.55 Aligned_cols=91 Identities=23% Similarity=0.269 Sum_probs=54.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 043440 625 MINGFRNLGNMEAALDMHRKMINDGIPCD--LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPD----IITYTVLING 698 (850)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~l~~~ 698 (850)
+..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..++++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 44556667777777777777777664433 235556666677777777777777776653 122 2222333445
Q ss_pred HHhCCCHHHHHHHHHHHHh
Q 043440 699 LYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~ 717 (850)
+...|+.++|++.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5667777777776655543
No 175
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.65 E-value=9.5e-05 Score=46.47 Aligned_cols=33 Identities=39% Similarity=0.750 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRKCLTPN 723 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 723 (850)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666654
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.00097 Score=68.87 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH
Q 043440 210 ALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSA 289 (850)
Q Consensus 210 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 289 (850)
.+...|++++|+..|.++++..+.....+..++.+|.+.|++++|+..+++++...+ .+...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 344555666666666666554433222555555666666666666666666555432 2445555555566666666666
Q ss_pred HHHHHHHHH
Q 043440 290 LELLDKIKE 298 (850)
Q Consensus 290 ~~~~~~~~~ 298 (850)
+..|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 666666555
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.0012 Score=60.31 Aligned_cols=79 Identities=15% Similarity=0.012 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPM--NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEG 314 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (850)
.+..++..+...|++++|...|++.+.....+ ...+|..+...+.+.|++++|+..+++.... .+....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHH
Confidence 55666666666666777776666665542221 1235666666666777777777777666653 12223344444444
Q ss_pred HH
Q 043440 315 CC 316 (850)
Q Consensus 315 ~~ 316 (850)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.0024 Score=58.42 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPN--KVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555544222111 23344444444444444444444444444
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0032 Score=60.21 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=86.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Q 043440 641 MHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKG---QLENARKIFDEMNR 717 (850)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 717 (850)
-++.-+..+ |.|...|..|...|...|+++.|..-|.++.+. -+++...+..+..++..+. ...++..+|++++.
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 334444444 778888888888888888888888888888874 2345666666666655332 35688888999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHh
Q 043440 718 KCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVN 767 (850)
Q Consensus 718 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 767 (850)
.+ +.|+.+...|...+...|++.+|...++.|++.. |....+..++.
T Consensus 222 ~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 222 LD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred cC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 53 1267777788888899999999999999998754 33444555554
No 180
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.069 Score=49.67 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-----HH
Q 043440 271 VVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIV-----NS 345 (850)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~ 345 (850)
.+-+.++..+.-.|++.-....+.++.+..++.++.....|++.-.+.|+.+.|...|+...+..-+.|..+. ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556677777778888888888988888776778888888888888999999999999877654323333333 33
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG 404 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (850)
....|.-.+++..|...|.+++..++.++..-|.-.-++.-.|+..+|++.++.|++.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33456667888899999999999988888888887777778899999999999998863
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0043 Score=67.00 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043440 636 EAALDMHRKMIND-GIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDE 714 (850)
Q Consensus 636 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 714 (850)
..+.+..++.... ..+.+..+|..+.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444442 12445567777766666778888888888888884 46777888888888888888888888888
Q ss_pred HHhCCCCCCHHHH
Q 043440 715 MNRKCLTPNVFIF 727 (850)
Q Consensus 715 ~~~~~~~p~~~~~ 727 (850)
.... .|...+|
T Consensus 479 A~~L--~P~~pt~ 489 (517)
T PRK10153 479 AFNL--RPGENTL 489 (517)
T ss_pred HHhc--CCCCchH
Confidence 8774 4544443
No 182
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.55 E-value=0.00016 Score=45.06 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRKCLTP 722 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 722 (850)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0024 Score=58.30 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHH
Q 043440 307 TFAVLIEGCCTNGKVEKGYELYTQMKHMGIKP--SVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWL 384 (850)
Q Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (850)
.|..++..+...|++++|...|+..+.....+ ...++..+...+...|++++|+..+++++...+.....++.+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 33444444444555555555555554332111 1224444555555555555555555555555444444444444444
Q ss_pred H
Q 043440 385 C 385 (850)
Q Consensus 385 ~ 385 (850)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 4
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.54 E-value=0.0043 Score=51.73 Aligned_cols=92 Identities=20% Similarity=0.143 Sum_probs=53.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CHhHHHHHHHHHH
Q 043440 311 LIEGCCTNGKVEKGYELYTQMKHMGIKPS--VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIA---NVFTYNDLLAWLC 385 (850)
Q Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 385 (850)
+..++-..|+.++|+.+|++.+..|+... ...+..+...+...|++++|..+|++.....|. +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566666666666666666655433 234444555666666666666666666665443 3333444445566
Q ss_pred hcCCHHHHHHHHHHHHh
Q 043440 386 KRGKVSEACNLWQKMVS 402 (850)
Q Consensus 386 ~~g~~~~A~~~~~~~~~ 402 (850)
..|+.++|+..+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66777777666655543
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.50 E-value=0.011 Score=55.69 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 40 LDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCC 119 (850)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (850)
.+.....+..+...|+ +.+|...|+.++...|.+ +....+...++.+|.+.|++++|+..|
T Consensus 5 ~~~lY~~a~~~~~~g~-y~~Ai~~f~~l~~~~P~s------------------~~a~~A~l~la~a~y~~~~y~~A~~~~ 65 (203)
T PF13525_consen 5 AEALYQKALEALQQGD-YEEAIKLFEKLIDRYPNS------------------PYAPQAQLMLAYAYYKQGDYEEAIAAY 65 (203)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTS------------------TTHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCC------------------hHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555566664 777777777777654433 222334556667777777777777777
Q ss_pred HHHhhCCCC
Q 043440 120 NGMIERDII 128 (850)
Q Consensus 120 ~~~~~~~~~ 128 (850)
++.++..|.
T Consensus 66 ~~fi~~yP~ 74 (203)
T PF13525_consen 66 ERFIKLYPN 74 (203)
T ss_dssp HHHHHH-TT
T ss_pred HHHHHHCCC
Confidence 776655443
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00012 Score=44.45 Aligned_cols=29 Identities=41% Similarity=0.858 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 726 IFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0028 Score=63.02 Aligned_cols=129 Identities=11% Similarity=0.118 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHH
Q 043440 307 TFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLK-AQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLC 385 (850)
Q Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (850)
+|..++...-+.+..+.|+.+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+.+++..+.+...|..-+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 44455555555555555555555555322 1122333333333222 334444555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 386 KRGKVSEACNLWQKMVSSGVRPSV---VSYNNMILAHCTVKNMDEAYSVFSEMLE 437 (850)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (850)
..|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+++.+.++..++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555543 21111 2455555555555555555555555544
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0024 Score=65.87 Aligned_cols=123 Identities=13% Similarity=0.187 Sum_probs=87.0
Q ss_pred CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043440 580 LQLDATAYGSLINGFCRRRDMESACKLFAELLEVG--LSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTY 657 (850)
Q Consensus 580 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 657 (850)
.+.+......+++.+....+++.+..++.+..... ...-..|..++++.|.+.|..++++++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34466667777777777777777777777776541 1112234457788888888888888888877777888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043440 658 TTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGK 702 (850)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 702 (850)
+.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777766666666666555555554
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.44 E-value=0.00046 Score=51.73 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 043440 688 DIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEG-NLQEAFRLHNEMLDK 753 (850)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 753 (850)
+..+|..+...+...|++++|+..|++.++.+ +.+...|..++.+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35567777777778888888888888877743 125666777888888887 688888888777653
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.079 Score=49.29 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-----CCCh-hHHHH
Q 043440 168 TIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGR-----VPSR-VYTNL 241 (850)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~-~~~~l 241 (850)
.-+.+++.+...|.+.-....+.++++..++.++.....++..-.+.||.+.|..+|++..+... .... +....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455566666677777777777777766666677777777777777777777777776654322 1222 44444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043440 242 IGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKED 299 (850)
Q Consensus 242 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (850)
...|.-++++.+|...+.+.+..+. .|+..-|.-.-+..-.|+..+|++..+.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5556666677777777777666543 24544444444444457777777777777663
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.16 Score=50.23 Aligned_cols=284 Identities=14% Similarity=0.073 Sum_probs=141.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 043440 145 NLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA--CLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACG 222 (850)
Q Consensus 145 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 222 (850)
|+-..|.++-.+.... +..|......++.+ -.-.|++++|.+-|+.|... ++.-..-...+.-..-+.|+.+.|.+
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 4555555544433211 11233333334332 24567888888888887742 11111112223333346677788887
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHHH--HHHHHHHHH---hcCChhHHHHHHHHH
Q 043440 223 LVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCG-KPMNLVV--ATSLMKGYY---KQGDLSSALELLDKI 296 (850)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~ 296 (850)
+-++....-+.-.-.+...+...|..|+++.|+++.+.-.... +.+++.- -..|+.+-. -.-+...|...-.+.
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 7777776544443477777777777888888887776654421 2233221 112221111 122344455554444
Q ss_pred HHcCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCH
Q 043440 297 KEDGLSPNKVTFA-VLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAY-KLFDEAVDSGIANV 374 (850)
Q Consensus 297 ~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~ 374 (850)
.+ ..||...-. .-..++.+.|+..++-.+++.+-+....|++ .++..+.+.|+..... +-.+++....+.+.
T Consensus 256 ~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccch
Confidence 44 444433222 2235666777777777777777665433332 1223334444422211 12222233333555
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 043440 375 FTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHC-TVKNMDEAYSVFSEMLEK 438 (850)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 438 (850)
.+...+...-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+.++.
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 55566666666666666666555554442 444445544444333 236666666666665554
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.41 E-value=0.0023 Score=65.93 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=91.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043440 614 GLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND--GIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIIT 691 (850)
Q Consensus 614 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 691 (850)
+.+.+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.+++.=+..|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446677777777777777788888888777765 2212233445788888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043440 692 YTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKE 737 (850)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 737 (850)
++.|++.+.+.|++..|.+++..|...+...+..++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877666555666665555555554
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.38 E-value=0.2 Score=50.75 Aligned_cols=152 Identities=9% Similarity=0.067 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 43 FCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGM 122 (850)
Q Consensus 43 ~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 122 (850)
.|...-+|.++++ +++|...+.++..... ..+..+-. ....+.++++|... +.+.........
T Consensus 9 lc~Qgf~Lqkq~~-~~esEkifskI~~e~~-~~~f~lke--------------Evl~grilnAffl~-nld~Me~~l~~l 71 (549)
T PF07079_consen 9 LCFQGFILQKQKK-FQESEKIFSKIYDEKE-SSPFLLKE--------------EVLGGRILNAFFLN-NLDLMEKQLMEL 71 (549)
T ss_pred HHHhhHHHHHHhh-hhHHHHHHHHHHHHhh-cchHHHHH--------------HHHhhHHHHHHHHh-hHHHHHHHHHHH
Confidence 4445556666775 7777777777665321 11111100 11233455555432 333333333333
Q ss_pred hh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC------------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 043440 123 IE-RDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLK--GL------------GVDSVTIRVMMRACLKEDTTEEAEK 187 (850)
Q Consensus 123 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~------------~~~~~~~~~l~~~~~~~g~~~~A~~ 187 (850)
.+ .|-.++...+ .+-...+.+.+++|.+.+..-... +. -+|...-+..+.++...|++.+++.
T Consensus 72 ~~~~~~s~~l~LF--~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~ 149 (549)
T PF07079_consen 72 RQQFGKSAYLPLF--KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRA 149 (549)
T ss_pred HHhcCCchHHHHH--HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHH
Confidence 22 2222222211 222234566666666666554333 11 1223334556677788888888888
Q ss_pred HHHHHhhCCC----CCCHHHHHHHHHHHHc
Q 043440 188 YFRDAKALGV----KLDARAYRMVIQALCR 213 (850)
Q Consensus 188 ~~~~~~~~~~----~~~~~~~~~l~~~~~~ 213 (850)
+++++...-+ .-+..+|+.++-.+.+
T Consensus 150 iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 150 ILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 8887765432 3567777776655543
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.0008 Score=49.66 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
+...+.+.|++++|++.|+.+++..|.+..++..++.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777777777777777777777654
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00064 Score=50.77 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=42.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 043440 351 LKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYN 413 (850)
Q Consensus 351 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 413 (850)
.+.|++++|++.|+++....|.+..++..++.+|.+.|++++|..+++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 35677777777777777777777777777777777777777777777777765 34433333
No 196
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.35 E-value=0.29 Score=51.78 Aligned_cols=124 Identities=11% Similarity=-0.003 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 043440 513 KCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLIN 592 (850)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 592 (850)
+..+|..-++--...|+++...-+|+...-. +..-...|-..+.-....|+.+-|..++....+-..+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777777788888888877776532 122233455555555555777777776666555433322222211122
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 043440 593 GFCRRRDMESACKLFAELLEVGLSPNTVV-YNSMINGFRNLGNMEAAL 639 (850)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 639 (850)
..-..|+++.|..+++.+.+.- |+.+- -..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 2334567777777777777652 44321 112233344566666655
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.011 Score=56.74 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCHhHHH
Q 043440 302 SPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA---QLLEEAYKLFDEAVDSGIANVFTYN 378 (850)
Q Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 378 (850)
+-|...|..|...|...|++..|...|....+.. +++...+..+..++... .+-.++..+|++++..++.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4477788888888888888888888888887753 34555566666555432 3456788889999988888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043440 379 DLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMIL 417 (850)
Q Consensus 379 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 417 (850)
.|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 88899999999999999999998863 33344544443
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.32 E-value=0.00089 Score=50.17 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=40.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 043440 340 VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRG-KVSEACNLWQKMVS 402 (850)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 402 (850)
..+|..+...+...|++++|+..|+++++..|.+..+|..+..++.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666666666666666 56666666666554
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.31 E-value=0.0012 Score=48.78 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=32.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 241 LIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 241 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
++..+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555666666666666665544 22555556666666666666666666666554
No 200
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.27 E-value=0.00032 Score=42.50 Aligned_cols=29 Identities=45% Similarity=0.731 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRKC 719 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (850)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555556666666666665555543
No 201
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.16 E-value=0.46 Score=50.34 Aligned_cols=186 Identities=13% Similarity=0.077 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHH
Q 043440 546 SPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLS--PNTVVYN 623 (850)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~ 623 (850)
+++..+|...++.-.+.|+.+.+.-+|+...-. +..=...|--.+.-....|+.+-|..++....+--.+ |....+.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 345677888888888889999988888887642 1112234444555555558888887777666554333 2233333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHH----H
Q 043440 624 SMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASN---LYSEMLSKGIEPDIITYTVL----I 696 (850)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~g~~~~~~~~~~l----~ 696 (850)
+. ..-..|++..|..+++.+...- +.-...-..-+....+.|+.+.+.. ++...... ..+......+ .
T Consensus 373 a~--f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 373 AR--FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFA 447 (577)
T ss_pred HH--HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHH
Confidence 32 2455779999999999888763 2223333333445567788877773 33333221 1111111111 1
Q ss_pred H-HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043440 697 N-GLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEG 738 (850)
Q Consensus 697 ~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 738 (850)
. .+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1 233467888899999988885 4557777888887766655
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0013 Score=49.12 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=39.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043440 700 YGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDI 764 (850)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 764 (850)
.+.|++++|+++|+++.+.. +.+..++..++.+|.+.|++++|..+++++.... |+...+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 35677777777777776642 1266667777777777777777777777777643 44333333
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.13 E-value=0.0073 Score=48.19 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMIERDI-IPLLRSMNSVLKALVRRN--------LIDEAKEFYNKMNLKGLGVDSVTI 169 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~ 169 (850)
...-|..+...+++..--.+|+...+.|+ .|++.+|+.++.+..+.. ++-+.+.+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666667888888888888888887 778888888877766532 122344444444444444444444
Q ss_pred HHHHHHH
Q 043440 170 RVMMRAC 176 (850)
Q Consensus 170 ~~l~~~~ 176 (850)
+.++..+
T Consensus 108 nivl~~L 114 (120)
T PF08579_consen 108 NIVLGSL 114 (120)
T ss_pred HHHHHHH
Confidence 4444443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.11 E-value=0.01 Score=57.71 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHHHHHHHH
Q 043440 204 YRMVIQALCRKPNLKVACGLVKEMRDMGRVPS--R-VYTNLIGACVKHGNLTEAFRLKDEMMSCGK--PMNLVVATSLMK 278 (850)
Q Consensus 204 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~ 278 (850)
|...+..+.+.|++++|+..|+.+++..|... . ++..++.+|...|++++|...|+.+++.-+ +....++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333455666777766766666555443 1 666677777777777777777776665321 112344555566
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 043440 279 GYYKQGDLSSALELLDKIKED 299 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~ 299 (850)
.+...|+.++|...|+++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777777776663
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.09 E-value=0.01 Score=57.77 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN--LVVATSLMKGYYKQGDLSSALELLDKIKEDGLS--PNKVTFAVLI 312 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 312 (850)
.|......+.+.|++++|+..|+.+++..+... ..++..++..|...|++++|...|+.+.+.-+. .....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 333333344556777777777777766432211 245666777777777777777777777653111 1233444555
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 043440 313 EGCCTNGKVEKGYELYTQMKHM 334 (850)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~ 334 (850)
..+...|+.++|...|+.+++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666777777777777777664
No 206
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.012 Score=46.95 Aligned_cols=71 Identities=13% Similarity=0.381 Sum_probs=35.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CcCHhhHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043440 559 FCRKNEIDLALKMRNEMMNEGL-QLDATAYGSLINGFCRRR--------DMESACKLFAELLEVGLSPNTVVYNSMINGF 629 (850)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 629 (850)
+...+++...-.+|+.+.+.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333455555555555555554 445555555544433321 1233455555555555666666666555544
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.04 E-value=0.017 Score=52.55 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC----------------CCHHHHHHH
Q 043440 653 DLQTYTTLIAGLLE-----EGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGK----------------GQLENARKI 711 (850)
Q Consensus 653 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~ 711 (850)
+..+|..+++.+.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 244444555555555556666666666666554431 123344555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh
Q 043440 712 FDEMNRKCLTPNVFIFNTLIAGYFK 736 (850)
Q Consensus 712 ~~~~~~~~~~p~~~~~~~l~~~~~~ 736 (850)
+++|...|+-||.+++..+++++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 5555555555555555555555433
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.02 E-value=0.47 Score=48.00 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 043440 619 TVVYNSMINGFRNLGNMEAALDMHRKMINDG-IPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITY-TVLI 696 (850)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~l~ 696 (850)
..+|...++.-.+..-++.|..+|-++.+.+ ..+++..+++++.-++ .|+...|..+|+--+.+ -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566667777677777888889998888886 5567778888887665 57888888888876663 3444433 4455
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHh
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPN--VFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVN 767 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 767 (850)
.-+..-++-+.|..+|++.+++ +..+ ..+|..+|.--..-|+...+..+=++|.+.- |..-+.....+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~--pQen~~evF~S 543 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV--PQENLIEVFTS 543 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc--CcHhHHHHHHH
Confidence 6667788888899999976654 3333 5678888888888899998888888887743 44434333333
No 209
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.00 E-value=0.32 Score=45.90 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=32.4
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 212 CRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSCG 265 (850)
Q Consensus 212 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 265 (850)
.+.|++++|...|+.+....+.... +...++.++.+.+++++|+..+++.++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3556666666666666655433222 55556666666666666666666665543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.26 Score=52.08 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCT 421 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (850)
+...+...+.+...+.-|-++|.++-+ ...+++.....++|.+|..+-++..+- .||+. ....+-+..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy--~pyaqwLAE 816 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVY--MPYAQWLAE 816 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc--ccccc--chHHHHhhh
Confidence 333344444455555666666665543 234555666666666666666555442 23322 122222333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 422 VKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENA 473 (850)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 473 (850)
..++++|.+ +|.+.|+-.+|.++++++...
T Consensus 817 ~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 333433333 345566667777777776543
No 211
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.98 Score=49.75 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=112.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 043440 134 MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRV----MMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQ 209 (850)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 209 (850)
...-+..+++...++.|..+-..-. .+..+... .++-+.+.|++++|...|-+.+.. ..| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4556777888888888877665432 13333333 334457889999999888776643 122 23455
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhH
Q 043440 210 ALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGK-PMNLVVATSLMKGYYKQGDLSS 288 (850)
Q Consensus 210 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 288 (850)
-+....+..+-..+++.+.+.|.....--..|+.+|.+.++.+.-.+..+.-. .|. ..| .-..+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHH
Confidence 56666778888888899999888877777788999999999887766655443 111 112 2345566667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 289 ALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQM 331 (850)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (850)
|.-+-.+... +......+ +-..|++++|++.++.+
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7766655422 23333333 34567888888888765
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.77 E-value=0.0061 Score=46.22 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=43.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
..|.+.+++++|.+.++++++.+ +.++..|...+.++.+.|++++|.+.+++.++.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677788888888888887753 22666677788888888888888888888877554
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.045 Score=48.49 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEML-----DKGLVPDDTTYDI 764 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~~~ 764 (850)
....++..+...|++++|..+.++++.. .| +...|..++.+|...|+..+|++.|+++. +.|+.|++.+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 4456777788899999999999999884 45 77789999999999999999999998875 3588888776443
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.72 E-value=0.01 Score=44.95 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=39.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
..|.+.+++++|.++++.++..+|.++..|...+.++.+.|++++|...|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777777777777777665
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.59 Score=51.34 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 590 LINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHR 643 (850)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 643 (850)
++..+.+..+++.++.+.+..-+. ++..|..++..+.+.+..+.-.+...
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 344455555555555555444332 45556666666665554444433333
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=96.64 E-value=0.061 Score=46.91 Aligned_cols=85 Identities=12% Similarity=-0.042 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043440 596 RRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASN 675 (850)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 675 (850)
..|++++|..+|.-+.-.++- +..-|..|..++...+++++|+..|......+ +.|+..+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 344444444444444433222 33334444444444444444444444443332 2223333333444444444444444
Q ss_pred HHHHHHH
Q 043440 676 LYSEMLS 682 (850)
Q Consensus 676 ~~~~~~~ 682 (850)
.|+..++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 4444443
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.61 E-value=0.98 Score=45.85 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 043440 549 VVTYTILINGFCRKNEIDLALKMRNEMMNEG-LQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVY-NSMI 626 (850)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 626 (850)
..+|...++...+..-++.|..+|.++.+.+ ..+++.++++++..++ .|+...|..+|+--... .||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455566666666666777777777777766 4566677777776554 36666777777665543 2333333 3344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 627 NGFRNLGNMEAALDMHRKMINDGIPCD--LQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
.-+...++-+.|..+|+..++. +..+ ...|..+|.-=..-|++..+..+-+.+.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4556667777777777755543 1111 34555555555555666555555555554
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.61 E-value=0.0065 Score=46.78 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRK----CLT-PN-VFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
+++.+...|...|++++|++.|++.++. |.. |+ ..++..++.+|...|++++|++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555666666666665555431 100 11 3446666667777777777777766654
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.49 Score=48.15 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 723 NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 723 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
+-..+.+++.++.-.|++++|.+.+++|....
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 55666788888999999999999999998753
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.56 E-value=0.83 Score=44.43 Aligned_cols=97 Identities=21% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHH-H
Q 043440 167 VTIRVMMRACLKEDTTEEAEKYFRDAKAL-GVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIG-A 244 (850)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~ 244 (850)
.........+...+.+..+...+...... ........+......+...+++..+...+.........+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444445555555555555544431 112233334444444444445555555555555433333222222222 4
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 043440 245 CVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~ 263 (850)
+...|+++.|...+.+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 140 LYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555433
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.5 Score=47.77 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=14.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHH
Q 043440 444 VVTYSVLIDGYFKQGDAERAFDVLD 468 (850)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (850)
..+|..+......+|+.+-|..+++
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHh
Confidence 3455555555556666666665554
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.55 E-value=0.19 Score=44.01 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=59.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN 707 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 707 (850)
-+...|++++|..+|+-+...+ +.+..-+..|..++-..+++++|+..|..+...+ .-|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 3456777777777777776665 4566666777777777777777777777766543 2344445556667777777777
Q ss_pred HHHHHHHHHh
Q 043440 708 ARKIFDEMNR 717 (850)
Q Consensus 708 A~~~~~~~~~ 717 (850)
|...|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777766
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.31 Score=45.08 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIE---RDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTI 169 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 169 (850)
..-...|.--..+|....+++.|...+.++.+ .+-.+.. ....++.|.-+.+++... ..-+..+
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-----------AAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-----------AAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-----------HHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 34445566667777788888888777766542 1111110 111233333333333322 1112234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-----h-hHHHHHH
Q 043440 170 RVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPS-----R-VYTNLIG 243 (850)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~l~~ 243 (850)
......|...|.++.|-..+++..+. ...-++++|+++|++....-...+ . .+....+
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 44455666677776666666654431 133456666666665433100000 0 3344445
Q ss_pred HHHhcCCHHHHHHHH
Q 043440 244 ACVKHGNLTEAFRLK 258 (850)
Q Consensus 244 ~~~~~g~~~~A~~~~ 258 (850)
++.+..++++|-..|
T Consensus 159 ~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAF 173 (308)
T ss_pred HhhhhHHhhHHHHHH
Confidence 555555555554444
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.82 Score=48.50 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHH
Q 043440 305 KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWL 384 (850)
Q Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (850)
..+...+..-+.+...+.-|-++|..|-. ..++++.....+++++|..+-++..+. -..+|..-.+.+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWL 814 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHh
Confidence 33444444455556666677777766543 234566667777888887776665443 222344445555
Q ss_pred HhcCCHHHHHHHH
Q 043440 385 CKRGKVSEACNLW 397 (850)
Q Consensus 385 ~~~g~~~~A~~~~ 397 (850)
..+.++++|.+.|
T Consensus 815 AE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 815 AENDRFEEAQKAF 827 (1081)
T ss_pred hhhhhHHHHHHHH
Confidence 5555555555443
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=96.47 E-value=0.18 Score=51.96 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043440 600 MESACKLFAELLEV-GLSPN-TVVYNSMINGFRN---------LGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEG 668 (850)
Q Consensus 600 ~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 668 (850)
.+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++.++.+ +.|+.+...+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45566666666611 12333 3334433333321 234567888888888887 778888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 043440 669 KLLTASNLYSEMLSKGIEPD-IITYTVLINGLYGKGQLENARKIFDEMNRKCLTPN---VFIFNTLIAGYFKEGNLQEAF 744 (850)
Q Consensus 669 ~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~ 744 (850)
+++.|...|+++... .|| ..+|......+.-+|+.++|.+.+++..+ +.|. .......++.|+.++ .++|+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 899999999998884 455 44677777777888999999999999877 3452 333444455666664 56677
Q ss_pred HHHHH
Q 043440 745 RLHNE 749 (850)
Q Consensus 745 ~~~~~ 749 (850)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 76654
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.07 Score=50.66 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHHHHHHH
Q 043440 203 AYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSCGK--PMNLVVATSLM 277 (850)
Q Consensus 203 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li 277 (850)
.|+.-+..+ +.|++..|...|...++..+.... ++..|+.++...|++++|...|..+.+.-+ +.-+..+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 465555544 667788888888888887665443 788888888888888888888887766422 12345667777
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 043440 278 KGYYKQGDLSSALELLDKIKED 299 (850)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~ 299 (850)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888887764
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.057 Score=54.00 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNN-MILAHC 420 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 420 (850)
+++.|..++.+.+++..|++..++++..+++|+.+...-..++...|+++.|+..|+++++. .|+...... ++....
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 45556666667777777777777777777777777777777777777777777777777664 344433333 322222
Q ss_pred hcCCH-HHHHHHHHHHHhC
Q 043440 421 TVKNM-DEAYSVFSEMLEK 438 (850)
Q Consensus 421 ~~g~~-~~A~~~~~~~~~~ 438 (850)
+.... +...++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 22222 3335666666543
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.39 E-value=0.0096 Score=45.83 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 622 YNSMINGFRNLGNMEAALDMHRKMI 646 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (850)
++.+...|...|++++|+..|++.+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.36 E-value=0.029 Score=57.44 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 651 PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDI----ITYTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
|.+...++.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|.+.|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677888888888888888888888888887 45653 35788888888888888888888888874
No 230
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.36 E-value=0.12 Score=47.30 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=61.4
Q ss_pred CHhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043440 583 DATAYGSLINGFCRR-----RDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTY 657 (850)
Q Consensus 583 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 657 (850)
+..+|..+++.|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 555666666665432 4555555555666666666666666666655533 2211 1111111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043440 658 TTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQ 704 (850)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 704 (850)
-.-.+-+-|++++++|...|+-||..++..|+..+.+.+.
T Consensus 114 -------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0112345689999999999999999999999999965554
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.33 E-value=0.083 Score=44.99 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043440 209 QALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSCGK 266 (850)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 266 (850)
....+.|++++|.+.|+.+..+-+.... +...|+.+|.+.+++++|+..+++.++..+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3334556666666666666665443322 556666666666666666666666666543
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.071 Score=53.36 Aligned_cols=95 Identities=19% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 043440 655 QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAG 733 (850)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 733 (850)
.++..|.-+|.+.+++.+|++.-++.+..+ ++|.....--..+|...|+++.|+..|+++++ +.| |-.+-+-|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 345566666777777777777777777643 34555555566667777777777777777776 345 33334444444
Q ss_pred HHhcCCHHH-HHHHHHHHHH
Q 043440 734 YFKEGNLQE-AFRLHNEMLD 752 (850)
Q Consensus 734 ~~~~g~~~~-A~~~~~~~~~ 752 (850)
-.+...+.+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 433333333 3556666654
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.31 E-value=0.94 Score=46.14 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCG---KPMNLVVATSLMKGYYK---QGDLSSALELLDKIKEDGLSPNKVTFAV 310 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 310 (850)
+...++-.|....+++.-+++.+.+.... ......+-...+-++.+ .|+.++|++++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33344445666777777777777765531 11112222233344445 6777777777777555445566667766
Q ss_pred HHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 043440 311 LIEGCCTN---------GKVEKGYELYTQMKHMGIKPSVFIVNSLLC 348 (850)
Q Consensus 311 l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 348 (850)
+++.|-.. ...++|+..|.+.-+. .||.+.-..++.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~At 267 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAAT 267 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHH
Confidence 66655321 1245566655554432 344443333333
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.14 Score=49.56 Aligned_cols=150 Identities=10% Similarity=0.045 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHH
Q 043440 562 KNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVY----NSMINGFRNLGNMEA 637 (850)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~ 637 (850)
.|+..+|...++++++. .+.|..++..--++|.-.|+.+.-...+++++.. ..||...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 56666666666666654 3446666666666666677766666666666643 22333222 222333456666777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHH
Q 043440 638 ALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDI----ITYTVLINGLYGKGQLENARKIFD 713 (850)
Q Consensus 638 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 713 (850)
|.+.-++..+.+ +.|..+-.++.+.+...|+..++.++..+-... .+... ..|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 777766666665 556666666666666667777766655443321 11100 011112223344566667777666
Q ss_pred HH
Q 043440 714 EM 715 (850)
Q Consensus 714 ~~ 715 (850)
+-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.65 Score=43.10 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---C--CCCCHHHHHHHHH
Q 043440 135 NSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKAL---G--VKLDARAYRMVIQ 209 (850)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~ 209 (850)
+.-...|...|..+-|...+++.-.. .+..++++|+.++.+.... + ...-...+....+
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 33444566666666655555544321 3445566666666654321 1 0112233555566
Q ss_pred HHHcCCChhHHHHHHHHHHH----CCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcHHHHHHHHHHH
Q 043440 210 ALCRKPNLKVACGLVKEMRD----MGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSC---GKPMNLVVATSLMKGY 280 (850)
Q Consensus 210 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~ 280 (850)
.+.+..++++|-..+.+-.. ....++. .+...|-+|.-..++..|.+.++.--+. ..+.+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 67777777777666654322 1112222 4666666666677888888887764332 1233556666777766
Q ss_pred HhcCChhHHHHHH
Q 043440 281 YKQGDLSSALELL 293 (850)
Q Consensus 281 ~~~g~~~~A~~~~ 293 (850)
..|+.+++.+++
T Consensus 239 -d~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 -DEGDIEEIKKVL 250 (308)
T ss_pred -ccCCHHHHHHHH
Confidence 566666665544
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.038 Score=48.96 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043440 100 SYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKM 157 (850)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 157 (850)
..++..+...|++++|+....++...++. +...|..++.+|...|+...|..+|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444555555555555555554444 4444555555555555555555555444
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.55 Score=45.20 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 210 ALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMM 262 (850)
Q Consensus 210 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 262 (850)
.....|++.+|...|.......+....+...++.+|...|+++.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455666666666666665544443455556666666666666666665553
No 238
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.38 Score=41.91 Aligned_cols=122 Identities=19% Similarity=0.201 Sum_probs=70.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhcCCH
Q 043440 177 LKEDTTEEAEKYFRDAKALGVKLDARA-YRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR----VYTNLIGACVKHGNL 251 (850)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 251 (850)
.+.+..++|+.-|..+.+.|...-++. ...........|+-..|...|.++-.....|.. ....-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 566777777777777777665433222 222334455667777777777777665444432 233334445566667
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 252 TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
++.....+.+...+-+.....--.|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666666554443333334445555566667777777777766654
No 239
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.13 E-value=1.8 Score=43.76 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 043440 412 YNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCK 491 (850)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 491 (850)
.+..+.-+...|+...|.++-.+.. .||...|-..+.+++..++|++-..+-.. .-++..|...+..+.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3333444444555555555443331 23555555555566666655544433211 1123455555555555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHH
Q 043440 492 AGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVY 537 (850)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 537 (850)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 56555555555441 1133444555555555555443
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.08 E-value=0.063 Score=55.11 Aligned_cols=66 Identities=11% Similarity=-0.000 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 617 PNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDL---QTYTTLIAGLLEEGKLLTASNLYSEMLSK 683 (850)
Q Consensus 617 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 683 (850)
.+...++.+..+|.+.|++++|+..|++.++.+ |.+. .+|.++..+|...|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357789999999999999999999999999985 3344 45999999999999999999999999984
No 241
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.08 E-value=1.9 Score=43.58 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=36.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHH
Q 043440 312 IEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVS 391 (850)
Q Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (850)
+.-+...|+...|.++-.+.. .||..-|-..+.+++..+++++-.++... + ..+.-|..++..+.+.|+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k---KsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K---KSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C---CCCCChHHHHHHHHHCCCHH
Confidence 334444555554444433331 23444455555555555555544443221 1 13344555555555555555
Q ss_pred HHHHHHHH
Q 043440 392 EACNLWQK 399 (850)
Q Consensus 392 ~A~~~~~~ 399 (850)
+|..+..+
T Consensus 255 eA~~yI~k 262 (319)
T PF04840_consen 255 EASKYIPK 262 (319)
T ss_pred HHHHHHHh
Confidence 55554444
No 242
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=0.34 Score=42.17 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=86.1
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-HHH--HHHHHHHhcCCh
Q 043440 212 CRKPNLKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLV-VAT--SLMKGYYKQGDL 286 (850)
Q Consensus 212 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~--~li~~~~~~g~~ 286 (850)
.+.+..++|+.-|..+.+.|...-. ............|+...|+..|+++-.....|... -.. .-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4668889999999999988776555 67777788888999999999999887654444332 111 122234567888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043440 287 SSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHM 334 (850)
Q Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (850)
++.....+-+...+.+--...-..|.-+-.+.|++.+|.+.|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 887777777655443333445566666777888888888888887663
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=0.083 Score=50.20 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHH
Q 043440 168 TIRVMMRACLKEDTTEEAEKYFRDAKALGVK--LDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLI 242 (850)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~ 242 (850)
.|+..+. +.+.|++..|...|...++..+. -...++..|...+...|++++|...|..+.+..+.... .+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4666665 46778899999999999887543 13456778899999999999999999999987665443 889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 043440 243 GACVKHGNLTEAFRLKDEMMSCG 265 (850)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~~~~~~ 265 (850)
.+..+.|+.++|...|+++++.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999998863
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.00 E-value=1.7 Score=42.24 Aligned_cols=166 Identities=19% Similarity=0.108 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHH-
Q 043440 515 LTYNSIIDGFVKEDDMISALTVYREMHES-GLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLIN- 592 (850)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~- 592 (850)
..+......+...+++..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444555555555555555554431 113333444444444555555555555555555432221 111111112
Q ss_pred HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 043440 593 GFCRRRDMESACKLFAELLEVGL--SPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPC-DLQTYTTLIAGLLEEGK 669 (850)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 669 (850)
.+...|+++.|...+.+...... ......+......+...++.+.++..+.+..... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 44455555555555555533211 0112222222222344445555555555554442 22 23444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 043440 670 LLTASNLYSEMLS 682 (850)
Q Consensus 670 ~~~A~~~~~~~~~ 682 (850)
+++|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444444
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.96 Score=43.62 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=86.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDE 427 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 427 (850)
......|++.+|...|..+....+.+..+...++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34456778888888888888877767777778888888888888888888876644222122222222333444444443
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHHcCC
Q 043440 428 AYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKI-SPTDYTSNIIINGLCKAGR 494 (850)
Q Consensus 428 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 494 (850)
...+-...-.. +.|...-..+...+...|+.+.|.+.+-.+.+++. -.|...-..++..+.--|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 34444443332 23666666777778888888888877766655421 2233444455555444443
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.00 E-value=0.45 Score=46.69 Aligned_cols=127 Identities=19% Similarity=0.148 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH--
Q 043440 624 SMINGFRNLGNMEAALDMHRKMINDG-----IPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLS----KGIEPDIITY-- 692 (850)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~-- 692 (850)
++..++...+.++++++.|+.+.+.- -.....++..|...|....++++|.-+..++.+ .++..=..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34555555566666666666655430 011224555666666666666666655555443 1111111111
Q ss_pred ---HHHHHHHHhCCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 693 ---TVLINGLYGKGQLENARKIFDEMNR----KCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEM 750 (850)
Q Consensus 693 ---~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (850)
..+.-++-..|+.-.|.+..++..+ .|-.+ .......+++.|...|+.|.|+.-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1233344555666556555555433 22111 1222345566666666666666666554
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.94 E-value=1.6 Score=41.45 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 043440 96 SGVFSYLLRSYVRADRINDAVDCCNGMIERD 126 (850)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 126 (850)
..+...++-++.+.+++++|+...++.....
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 4444555555555555555555555554433
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.88 E-value=0.13 Score=42.26 Aligned_cols=90 Identities=18% Similarity=0.064 Sum_probs=52.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCh---hHHHHHHHHHhcCC
Q 043440 175 ACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMG-RVPSR---VYTNLIGACVKHGN 250 (850)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~ 250 (850)
++...|+++.|++.|.+.+..-+. ...+||.-..++.-+|+.++|+.-+.+.++.. ..... +|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666666654332 55666666666666666776666666665532 22111 34444555666666
Q ss_pred HHHHHHHHHHHHhCC
Q 043440 251 LTEAFRLKDEMMSCG 265 (850)
Q Consensus 251 ~~~A~~~~~~~~~~~ 265 (850)
.+.|+.-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655544
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.82 E-value=0.31 Score=40.07 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhCCC
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDII---TYTVLINGLYGKGQ 704 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~ 704 (850)
+....|+++.|++.|.+.+..- |.....||.-..++.-+|+.++|++-++++++..-..... .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456667777777777766653 5566677777777777777777777777766631111221 23333445566677
Q ss_pred HHHHHHHHHHHHhCC
Q 043440 705 LENARKIFDEMNRKC 719 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~ 719 (850)
-+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666654
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.74 E-value=2.5 Score=42.20 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 203 AYRMVIQALCRKPNL---KVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSC 264 (850)
Q Consensus 203 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 264 (850)
++..++.++...+.. +.|..+++.+....+.+..++..-+.++.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344555566555533 34444555554443333335555555555566666666666666653
No 251
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.71 E-value=4.9 Score=45.42 Aligned_cols=193 Identities=13% Similarity=0.145 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhhhcCCCCc--HhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHH
Q 043440 20 PVSAFEYFKRVERRRGFLKS--LDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSG 97 (850)
Q Consensus 20 ~~~a~~~f~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (850)
...|+..++-+..++.+.|- ..++..++.+|..--.+++.|+..|.+.+.....+. +.+ .-..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~---~~d------------~k~~ 101 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR---LTD------------LKFR 101 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---hHH------------HHHH
Confidence 34556666666544444443 455667888888433368999999888765322211 110 0112
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh----CCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIE----RDIIPLLRSMNSV-LKALVRRNLIDEAKEFYNKMNLKG---LGVDSVTI 169 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 169 (850)
....+++.|.+.+... |....++.++ .+..++...+..+ +..+...+++..|.+.++.+.... ..|....+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 3445677777766555 8888877654 2344566666665 444444479999999998876543 23334444
Q ss_pred HHHHHHH--HhcCCHHHHHHHHHHHhhCCC---------CCCHHHHHHHHHHHH--cCCChhHHHHHHHHHH
Q 043440 170 RVMMRAC--LKEDTTEEAEKYFRDAKALGV---------KLDARAYRMVIQALC--RKPNLKVACGLVKEMR 228 (850)
Q Consensus 170 ~~l~~~~--~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 228 (850)
..++.+. ...+.++++.+....+..... .|...+|..+++.++ ..|+++.+...++++.
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444443 456767778777777633211 223455666666544 5677777766665543
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.71 E-value=0.45 Score=40.62 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=47.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHH
Q 043440 173 MRACLKEDTTEEAEKYFRDAKALGVK--LDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACV 246 (850)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~ 246 (850)
.....+.|++++|.+.|+.+..+-+. -...+.-.++.++.+.+++++|...+++.++..|.... -|.....+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33446677777777777777665321 13345666777888888888888888888887665444 4444444433
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.65 E-value=0.78 Score=49.50 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHcCCChhHHHHHHHHHHHCCC---CCCh-hHHHHHHHHHhcCCHHHH
Q 043440 180 DTTEEAEKYFRDAKALGVKLDARAYRMV-IQALCRKPNLKVACGLVKEMRDMGR---VPSR-VYTNLIGACVKHGNLTEA 254 (850)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-~~~~l~~~~~~~g~~~~A 254 (850)
.+.+.|.++++.+.+.- |+...|... .+.+...|++++|++.|+++..... .... .+.-++-.+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 34444555555544432 233332222 2333444555555555554432110 1111 555566666666777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHH-HHHHHhcCCh-------hHHHHHHHHHHH
Q 043440 255 FRLKDEMMSCGKPMNLVVATSL-MKGYYKQGDL-------SSALELLDKIKE 298 (850)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~-------~~A~~~~~~~~~ 298 (850)
...|..+.+... .+...|..+ ..++...|+. ++|.++|.++..
T Consensus 325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777776665421 222233322 2333445655 667777766543
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.61 E-value=0.04 Score=36.47 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043440 726 IFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDIL 765 (850)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 765 (850)
+|..++.+|...|++++|.++|+++++..+. |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4556666666666666666666666665443 44444443
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.59 E-value=0.72 Score=41.91 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 043440 94 LDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLK 160 (850)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (850)
.-+.+|+-|+-.+...|+++.|.+.|+...+.++.-+-...|.-+..| --|+++-|.+=|...-+.
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 344556666666666666666666666666655553333333333222 335666665555554444
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.3 Score=47.33 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=102.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCH
Q 043440 281 YKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSV----FIVNSLLCGFLKAQLL 356 (850)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 356 (850)
.-.|+..+|-..++++++. .+.|..++...=.++.-.|+.+.-...+++++.. ..+|. ++...+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567777877778887775 4556677777777788888888888888877653 12333 3333344455688999
Q ss_pred HHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043440 357 EEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRP---SVVSYNNMILAHCTVKNMDEAYSVFS 433 (850)
Q Consensus 357 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (850)
++|.+.-++.++.++.|..+-.++...+--.|+..++.+...+-...=-.. -...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999999999988888888888888889999999988776543210000 01112222223445567777777776
Q ss_pred HH
Q 043440 434 EM 435 (850)
Q Consensus 434 ~~ 435 (850)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=95.56 E-value=0.7 Score=47.83 Aligned_cols=136 Identities=11% Similarity=0.011 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043440 635 MEAALDMHRKMI---NDGIPCDLQTYTTLIAGLLE---------EGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGK 702 (850)
Q Consensus 635 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 702 (850)
.+.|+.+|.+.+ +.+ |.....|..+..++.. .....+|.++.+++++.+ +.|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 578899999999 433 3345666666655432 234567888888998864 55788888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHhhhhcCCc
Q 043440 703 GQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTT-YDILVNGKSRSDT 774 (850)
Q Consensus 703 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~ 774 (850)
|+++.|...|++.... .| ...+|...+..+...|+.++|.+.+++.++..|..-... ....++.|+..+.
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~ 423 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPL 423 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCch
Confidence 9999999999999984 56 466688888889999999999999999887544322222 2334456666653
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=0.71 Score=49.79 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=11.8
Q ss_pred CCCChHHHHHHHHH
Q 043440 16 CRNEPVSAFEYFKR 29 (850)
Q Consensus 16 ~~~~~~~a~~~f~~ 29 (850)
..++.++|.++|+.
T Consensus 8 lnn~~~eAe~~l~~ 21 (468)
T PF10300_consen 8 LNNRFKEAEELLSP 21 (468)
T ss_pred HCCCHHHHHHHHHh
Confidence 47899999999983
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.49 E-value=0.97 Score=44.52 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCC----ChhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCcHHH
Q 043440 203 AYRMVIQALCRKPNLKVACGLVKEMRDM-GRVP----SRVYTNLIGACVKHGNLTEAFRLKDEMMSCG-----KPMNLVV 272 (850)
Q Consensus 203 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 272 (850)
+|..+.+++-+.-++.+++.+-+.-... |..+ ......+..++...+.++++++.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444455554444555555555444332 1122 1155667777777788888888888776531 1112346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-CCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---
Q 043440 273 ATSLMKGYYKQGDLSSALELLDKIKED--GLS-PNK------VTFAVLIEGCCTNGKVEKGYELYTQMKHMGIK-PS--- 339 (850)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--- 339 (850)
+-.|...|.+..++++|.-+..+..+. ... .|. .....+..++...|++-.|.+.-++..+..+. -|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777888888888888887766665431 111 111 12233444566677777777766665432111 12
Q ss_pred -HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 340 -VFIVNSLLCGFLKAQLLEEAYKLFDEAV 367 (850)
Q Consensus 340 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (850)
......+.+.|-..|+.+.|..-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233445566666666666666665544
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.36 E-value=2.1 Score=39.04 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
+++.|+--+...|+++.|.+.|+...+.++.-+-...|.-|..| --|++.-|.+-|...-+
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHh
Confidence 56666666666666666666666665554333333333322222 34556666555555544
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.31 E-value=0.057 Score=35.73 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHH
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLL 381 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 381 (850)
++..+...|...|++++|+++|+++++..|.|..+|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3455666666777777777777777776666666665554
No 262
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.18 E-value=4.8 Score=41.95 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCC
Q 043440 292 LLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQ-LLEEAYKLFDEAVDSG 370 (850)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 370 (850)
+|+....+ ...|+..|...+..+-+.+.+.+...+|.+|+... +.++..|..-..-....+ .++.|..+|.+.++..
T Consensus 93 lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 93 LYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 33443333 34466777777766666666777777777776642 122333333332222222 3777777777777777
Q ss_pred CCCHhHHHHHH
Q 043440 371 IANVFTYNDLL 381 (850)
Q Consensus 371 ~~~~~~~~~l~ 381 (850)
|.++..|-...
T Consensus 171 pdsp~Lw~eyf 181 (568)
T KOG2396|consen 171 PDSPKLWKEYF 181 (568)
T ss_pred CCChHHHHHHH
Confidence 76666654443
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.14 E-value=1.5 Score=38.37 Aligned_cols=124 Identities=10% Similarity=0.076 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043440 624 SMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKG 703 (850)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 703 (850)
.++..+...+.......+++.+...+ +.+....+.++..|++.. ..+..+.++. .++.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444555556666666666666554 345556666666665442 2333333331 112223334555666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 043440 704 QLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKE-GNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKS 770 (850)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 770 (850)
.++++.-++.++-. |...+..+... ++++.|++++++- .++..|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666666665532 11222223333 6666666666652 14556666655443
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.12 E-value=1.5 Score=45.62 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 619 TVVYNSMINGFRNLGNMEAALDMHRKMINDGIP-CDLQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
..+-..+..+..+.|+.++|++.|+++.+..-. .+......|+.++...+.+.++..++.+.-+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334445666777888888888888888765311 2344667788888888888888888887654
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.73 E-value=2.4 Score=44.12 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=52.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 043440 340 VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI--ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVR-PSVVSYNNMI 416 (850)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 416 (850)
..+-..+..+.-+.|+.++|++.|+++++..| .+..+...|+.++...+.+.++..++.+--+...+ .-...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 44445566666677888888888888887665 35557788888888888888888888876543221 1234555544
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.59 E-value=2.5 Score=36.88 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 043440 241 LIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ 283 (850)
Q Consensus 241 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 283 (850)
++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 34444444555555555555554432 3444555555555543
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.59 E-value=0.041 Score=33.82 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=26.4
Q ss_pred HHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043440 363 FDEAVDSGIANVFTYNDLLAWLCKRGKVSEAC 394 (850)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (850)
|+++++..|.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777778888888888888888888888875
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.57 E-value=5.5 Score=39.72 Aligned_cols=155 Identities=14% Similarity=0.095 Sum_probs=95.2
Q ss_pred HhcCChhHHHHHHHHHhhCC--CCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhC--------CCCCCH----
Q 043440 107 VRADRINDAVDCCNGMIERD--IIPLL-----RSMNSVLKALVRRN-LIDEAKEFYNKMNLK--------GLGVDS---- 166 (850)
Q Consensus 107 ~~~g~~~~A~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 166 (850)
.++|+++.|..++.++.... ..|+. .++..++....+.+ ++++|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 36889999999998875533 23332 23444555666667 998888888765332 112333
Q ss_pred -HHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 043440 167 -VTIRVMMRACLKEDTTEE---AEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLI 242 (850)
Q Consensus 167 -~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 242 (850)
.+...++.++...+.++. |..+.+.+....+. .+..+..-+..+.+.++.+++.+.+.+|+..-..++..+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 345667777877776554 45555555444322 4555656677777789999999999999987544444555544
Q ss_pred HHH---HhcCCHHHHHHHHHHHHh
Q 043440 243 GAC---VKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 243 ~~~---~~~g~~~~A~~~~~~~~~ 263 (850)
+.+ ... ..+.|...+..++.
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHH
Confidence 444 332 23455555555544
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.53 E-value=2 Score=38.73 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhHHHHHH
Q 043440 219 VACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN--LVVATSLMKGYYKQGDLSSALELL 293 (850)
Q Consensus 219 ~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 293 (850)
+.....+++...+..... +-..+...+...|++++|...++..+......+ ..+-..|.+.....|.+++|+.++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444455443322222 333455667777788888877777664311111 112234556677788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043440 294 DKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (850)
+...+.+. .......-.+.+...|+-++|+.-|...+..+
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 77754322 22234445567788888888888888877764
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.47 E-value=0.83 Score=48.45 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 305 KVTFAVLIEGCCTNGKVEKGYELYTQ 330 (850)
Q Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (850)
...|..|.....++|+++-|.+.|.+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33444444444444444444444443
No 271
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=10 Score=41.68 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=63.4
Q ss_pred HCCCCCCHhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 043440 333 HMGIKPSVFIVNS-----LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGK--VSEACNLWQKMVSSGV 405 (850)
Q Consensus 333 ~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~ 405 (850)
..|++.+..-|.. +++-+...+.+..|+++-..+......+...+......+.+..+ -+++++..++=...-.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 4466665555543 45666778889999988877654332236677777777777643 2223333333222212
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 406 RPSVVSYNNMILAHCTVKNMDEAYSVFSE 434 (850)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (850)
-...+|..+.......|+.+.|..+++.
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3556788888877888999999888764
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.14 E-value=2.1 Score=35.64 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=77.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043440 596 RRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASN 675 (850)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 675 (850)
-.|..++..++..+.... .+..-+|.+|--....-+-+-..+.++.+-+ -.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 356677777777777664 2444455444322222222222333322221 1121 22344444443
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 676 LYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 676 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
.+-.+ ..+.......++.+.++|+-+.-.+++..+.+. -++++.....++.+|.+.|+..++-+++.++.++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33322 124445566777888999999999999888753 357889999999999999999999999999999997
Q ss_pred C
Q 043440 756 V 756 (850)
Q Consensus 756 ~ 756 (850)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.03 E-value=1.2 Score=47.21 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 043440 134 MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR 213 (850)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (850)
.+.+++-+.+.|..+.|+.+-..-.. -.....+.|+++.|.+..+. ..++..|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 45555556666666666554432211 11122455666666554332 1255566666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELL 293 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (850)
+|+++-|...|++..+ +..|+-.|.-.|+.+.-.++.+.....|. +|....++.-.|+.++..+++
T Consensus 360 ~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666655433 45555555566665555555554444321 222333333445555555554
Q ss_pred HH
Q 043440 294 DK 295 (850)
Q Consensus 294 ~~ 295 (850)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=4 Score=36.87 Aligned_cols=115 Identities=14% Similarity=0.009 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHH
Q 043440 184 EAEKYFRDAKALGVKLDARAY--RMVIQALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLK 258 (850)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~ 258 (850)
+.....+.+........--++ -.+...+...+++++|...++.........+. +-..|.++....|.+++|...+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444445555544222111222 22356778899999999999988764332222 5667888899999999999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043440 259 DEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDG 300 (850)
Q Consensus 259 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 300 (850)
+.....+ ......-.-.+.+...|+-++|+.-|.+.++.+
T Consensus 150 ~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8765532 223334455678999999999999999998864
No 275
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.81 E-value=1.5 Score=37.14 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 654 LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAG 733 (850)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 733 (850)
..++.+++.+++..|+.+....+++..- |+.++... ..+. --....+.|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4556666666666666666655554432 22222100 0000 01122356788889999999
Q ss_pred HHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHhhhhcCCc
Q 043440 734 YFKEGNLQEAFRLHNEMLD-KGLVPDDTTYDILVNGKSRSDT 774 (850)
Q Consensus 734 ~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~ 774 (850)
|+..|++..|+++.+...+ .+++-+..+|..|++-+...-+
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999988764 5666677888888876555433
No 276
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.76 E-value=0.98 Score=38.22 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 043440 616 SPNTVVYNSMINGFRNLGNMEAALDMHRKMIND-GIPCDLQTYTTLIA 662 (850)
Q Consensus 616 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 662 (850)
.|+..+..+++.+|+..|++..|+++.+...+. +++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555555555555555555555444433 33444444444443
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.75 E-value=0.15 Score=31.85 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 726 IFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
+|..|+.+|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477889999999999999999998653
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.46 E-value=0.8 Score=44.50 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLD-----KGLVPDDTTYDI 764 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 764 (850)
++..++..+...|+.+.+.+.++++... .| +...|..++.+|.+.|+...|+..|+.+.+ .|+.|-..+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 5667778888888888888888888884 34 778888899999999999999888888764 688888888777
Q ss_pred HHhh
Q 043440 765 LVNG 768 (850)
Q Consensus 765 l~~~ 768 (850)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 7665
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.37 E-value=17 Score=41.14 Aligned_cols=182 Identities=17% Similarity=0.211 Sum_probs=97.4
Q ss_pred HHHHHHHHHh-hCCCCCC--HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHH
Q 043440 114 DAVDCCNGMI-ERDIIPL--LRSMNSVLKALV-RRNLIDEAKEFYNKMNLKGLGVDSV-----TIRVMMRACLKEDTTEE 184 (850)
Q Consensus 114 ~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 184 (850)
.|+++++.+. ...+.|. ..++-.++..|. ...+++.|+..+++.....-+++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4666777666 3444443 355667777776 6788888888888764433222222 1223445555555555
Q ss_pred HHHHHHHHhhCCCC----CCHHHHHHH-HHHHHcCCChhHHHHHHHHHHHCCC---CCCh-hHHHHHHH--HHhcCCHHH
Q 043440 185 AEKYFRDAKALGVK----LDARAYRMV-IQALCRKPNLKVACGLVKEMRDMGR---VPSR-VYTNLIGA--CVKHGNLTE 253 (850)
Q Consensus 185 A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-~~~~l~~~--~~~~g~~~~ 253 (850)
|....++.++.--. +-...+.-+ +..+...+++..|.+.++.+..... .+.. ++..+..+ ..+.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88877776543111 122223333 2222233688888888877766432 1112 33333333 334455666
Q ss_pred HHHHHHHHHhCC---------CCCcHHHHHHHHHHHH--hcCChhHHHHHHHHH
Q 043440 254 AFRLKDEMMSCG---------KPMNLVVATSLMKGYY--KQGDLSSALELLDKI 296 (850)
Q Consensus 254 A~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 296 (850)
+.+.++++.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666653211 1234556666666543 466666666655554
No 280
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.27 E-value=18 Score=41.01 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHH
Q 043440 96 SGVFSYLLRSYVRADRINDAVDC 118 (850)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~ 118 (850)
......-...+...|.+++|+..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~h 369 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDH 369 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHH
Confidence 33445555666677777777654
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.99 E-value=18 Score=40.28 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHH----H-HHhcCCHHHHHHHHHHHHh
Q 043440 425 MDEAYSVFSEMLEKRVTPNVVTYSVLID----G-YFKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 425 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~g~~~~A~~~~~~~~~ 472 (850)
...|...++...+.| +......+.. + +....+.+.|+.+|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 456667776666654 2222222222 2 3345566777777766655
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.96 E-value=1.5 Score=40.00 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH--H
Q 043440 97 GVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLL--RSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGV-DSVTIR--V 171 (850)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~--~ 171 (850)
..+..++.-|.+.|+.+.|++.|.++.+....+.. ..+-.++......|++..+.....+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45778899999999999999999998887655544 346777888888899998888887765432111 111111 1
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHh
Q 043440 172 MMRA--CLKEDTTEEAEKYFRDAK 193 (850)
Q Consensus 172 l~~~--~~~~g~~~~A~~~~~~~~ 193 (850)
+..+ +...+++..|-..|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1111 234566666666665543
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.79 E-value=0.29 Score=29.94 Aligned_cols=28 Identities=25% Similarity=0.435 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 725 FIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.+|..++.+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777777777777777777777766
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.76 E-value=25 Score=41.27 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHh--hHHHHHHHHHccCC
Q 043440 522 DGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDAT--AYGSLINGFCRRRD 599 (850)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 599 (850)
+-+.....+++|.-.|+..-+. .--+.+|-.+|++.+|..+..++... .+.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3334455566665555543221 12244556666676666666655431 1221 22455566666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 600 MESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRK 644 (850)
Q Consensus 600 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (850)
+-+|-++..+.... |. -.+..|++...+++|+.+-..
T Consensus 1015 h~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred chhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 66666666655442 11 122334555556666655443
No 285
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.73 E-value=0.94 Score=42.96 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043440 617 PNTVVYNSMINGFRN-----LGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIIT 691 (850)
Q Consensus 617 p~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 691 (850)
.|..+|...+..+.. .+.++=-...++.|.+.|+..|..+|+.|+..+-+-.- .|..+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHHH
Confidence 356666666655532 24455555556667777777777777777666533211 111100
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043440 692 YTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGN 739 (850)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 739 (850)
-. ..--|- .+-+-+++++++|...|+-||.++-..|++++.+.|.
T Consensus 129 Q~-~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QK-VFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HH-HHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 00 000010 1123355666666666666666666666666655543
No 286
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.62 E-value=1.6 Score=39.26 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 043440 663 GLLEEGKLLTASNLYSEMLSKGIEPD-----IITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFK 736 (850)
Q Consensus 663 ~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 736 (850)
-+.+.|++++|..-|.++++. .++. .+.|..-..++.+.+.++.|++-..+.++.+ | ...+...-+.+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 355678888888888877774 2222 2345556667788888888888888888854 4 34445555678888
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 043440 737 EGNLQEAFRLHNEMLDKGLV 756 (850)
Q Consensus 737 ~g~~~~A~~~~~~~~~~g~~ 756 (850)
..++++|+.-|+++++..+.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 88899999999998875543
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.49 E-value=21 Score=39.78 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCC
Q 043440 387 RGKVSEACNLWQKMVS-------SGVRPSVVSYNNMILAHCTVK-----NMDEAYSVFSEMLEKR 439 (850)
Q Consensus 387 ~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~ 439 (850)
..+.+.|+.+|+.+.+ .| .......+...|.+.. +.+.|..++...-+.|
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 3455555555555544 33 2223334444444321 4455556555555544
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.47 E-value=0.16 Score=31.20 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 043440 651 PCDLQTYTTLIAGLLEEGKLLTA 673 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~~~A 673 (850)
|.+..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44445555555555555555444
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.42 E-value=27 Score=40.95 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=19.9
Q ss_pred CCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 043440 441 TPNVVTYSVLIDGYFKQG--DAERAFDVLDQMEN 472 (850)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 472 (850)
.|+ .-...++..|.+.+ .+++|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 44456777777777 66777776666654
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.21 E-value=16 Score=37.96 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 269 NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSP---NKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
...+|..++..+.+.|.++.|...+.++...+... .+.....-+..+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455666666666666666666666665432111 122233334445556666666666655554
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.17 E-value=1.4 Score=42.88 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHHHH
Q 043440 341 FIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS-----SGVRPSVVSYNNM 415 (850)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 415 (850)
.++..++..+...|+++.+...+++.....|-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35666777888888899999999999998888888999999999999999999998888765 3666666655444
Q ss_pred HHH
Q 043440 416 ILA 418 (850)
Q Consensus 416 ~~~ 418 (850)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 292
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.78 E-value=2.3 Score=37.91 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 705 LENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
+++|.+.|++... .+|+...|+.-+... .+|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 4445555555554 346666665554443 234555555554443
No 293
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.78 E-value=6.9 Score=32.74 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 415 MILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAK 474 (850)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 474 (850)
.+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444445555555555554432 23344444455555555555555555555555444
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.52 E-value=16 Score=36.50 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC
Q 043440 322 EKGYELYTQMKHMGIKPSVFIVNSLLCGFLK--A----QLLEEAYKLFDEAVDSGI 371 (850)
Q Consensus 322 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~ 371 (850)
++.+.+++.+.+.|+..+.+++.+....... . .....|..+|+.|.+..|
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 3445556666666666555554442222221 1 123455555666655554
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.41 E-value=0.48 Score=28.88 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 725 FIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
..|..++.+|...|++++|++.|++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777765
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.39 E-value=0.46 Score=29.60 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 043440 622 YNSMINGFRNLGNMEAALDMHRK 644 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~ 644 (850)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.13 E-value=2.3 Score=38.74 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 621 VYNSMINGFRNLGNMEAALDMHRKMINDGIPCD--LQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
.+..++.-|.+.|+.++|++.|.++.+....+. ...+-.++......+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666655532222 23445555555556666666555555443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.23 E-value=12 Score=32.87 Aligned_cols=17 Identities=29% Similarity=0.562 Sum_probs=7.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 043440 245 CVKHGNLTEAFRLKDEM 261 (850)
Q Consensus 245 ~~~~g~~~~A~~~~~~~ 261 (850)
+...|++.+|+.+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33444444444444444
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.22 E-value=22 Score=35.67 Aligned_cols=127 Identities=17% Similarity=0.315 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCC---
Q 043440 288 SALELLDKIKEDGLSPNKVTFAVLIEGCCT--N----GKVEKGYELYTQMKHMGI---KPSVFIVNSLLCGFLKAQL--- 355 (850)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 355 (850)
+.+.+++.+.+.|...+..+|.+....... . .....|..+|+.|++.-. .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666666555443222222 1 124567778888876532 2334445444433 2222
Q ss_pred -HHHHHHHHHHHHHCCC--CCHhHHHHHHHHHHhcC-C--HHHHHHHHHHHHhCCCCCChhhHHHHH
Q 043440 356 -LEEAYKLFDEAVDSGI--ANVFTYNDLLAWLCKRG-K--VSEACNLWQKMVSSGVRPSVVSYNNMI 416 (850)
Q Consensus 356 -~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g-~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 416 (850)
.+.+..+|+.+.+.|. .|..-+.+-+-++.... . ...+.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2445555655555454 23222222222222211 1 345666777777777766666555444
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.11 E-value=0.64 Score=28.40 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIER 125 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 125 (850)
+|..++..|...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555555555555555555555443
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.06 E-value=1.4 Score=43.07 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=22.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 280 YYKQGDLSSALELLDKIKEDGLSP-NKVTFAVLIEGCCTNGKVEKGYELYTQ 330 (850)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (850)
|.++|++++|+..+.+... ..| |.+++..-..+|.+..++..|..-...
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555544433 222 444444444455544444444433333
No 302
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.45 E-value=31 Score=36.35 Aligned_cols=76 Identities=9% Similarity=-0.097 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCcHHHHHH
Q 043440 199 LDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGAC-VKHGNLTEAFRLKDEMMSCGKPMNLVVATS 275 (850)
Q Consensus 199 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 275 (850)
.|+..|...+.-+-+.+.+.+...+|.+|+...+.....|..-+.-. -..-+++.|+.+|.+-++.++. ++..|..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw~e 179 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLWKE 179 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHHHH
Confidence 36677777776666666677777777777775443333444333332 2333477777777776665322 3444443
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=18 Score=33.77 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=11.5
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 043440 281 YKQGDLSSALELLDKIKED 299 (850)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~ 299 (850)
...+++.+|+.+|+++...
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.38 E-value=1.4 Score=42.97 Aligned_cols=89 Identities=21% Similarity=0.073 Sum_probs=41.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCC
Q 043440 138 LKALVRRNLIDEAKEFYNKMNLKGLGV-DSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPN 216 (850)
Q Consensus 138 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 216 (850)
++-|+++|.+++|++.|...... .| |.+++..-..+|.+..++..|+.-....+..+- .-.-+|+.-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 34455666666666666554433 22 555555555556666666555555544443210 011223333333333344
Q ss_pred hhHHHHHHHHHHH
Q 043440 217 LKVACGLVKEMRD 229 (850)
Q Consensus 217 ~~~A~~~~~~~~~ 229 (850)
..+|.+-++.+++
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 4444444444444
No 305
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.36 E-value=2.9 Score=39.85 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 043440 461 ERAFDVLDQMENAKISPTDYTSNIIINGLCKAGR 494 (850)
Q Consensus 461 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 494 (850)
+-++.++++|...|+.||..+-..+++++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456677777777777777777777777666554
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.12 E-value=4.6 Score=36.44 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=30.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.++.+.+..+.|+.-..++++.+|....+...-..+|-+...+++|+.-|+++.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34445555555555555555555544444444455555556666666666665554
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.10 E-value=15 Score=32.32 Aligned_cols=53 Identities=15% Similarity=-0.095 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 351 LKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 351 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.+.++.+++..++..+....|.....-..-...++..|++.+|+.+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45556666666666666666644444444555666677777777777776554
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.70 E-value=33 Score=35.68 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 653 DLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEP---DIITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
...+|..++..+.+.|.++.|...+.++...+... ++.+...-+..+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666667777777777777777666532111 222333344455566777777776666655
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.63 E-value=0.94 Score=27.54 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIE 124 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 124 (850)
.+..++..|...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 310
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.16 E-value=24 Score=36.84 Aligned_cols=107 Identities=17% Similarity=0.060 Sum_probs=63.0
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH----
Q 043440 629 FRNLGNMEAALDMHRKMIND---GI--PC---DLQTYTTLIAGLLEEGKLLTASNLYSEMLS-------KGIEPDI---- 689 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~~~~---- 689 (850)
+.-.|++.+|.+++...--. |. .| ....||.|.-...+.|.+.-+..+|.++++ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 45567777777765543211 11 11 112346666666666776666666666653 3544432
Q ss_pred -------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043440 690 -------ITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKE 737 (850)
Q Consensus 690 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 737 (850)
.+|| ..-.|...|+.-.|.+.|.+.... +..++..|-.|+.+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 1233 233466778888888888887764 445778888888887653
No 311
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.57 E-value=34 Score=34.48 Aligned_cols=123 Identities=14% Similarity=0.023 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----C
Q 043440 634 NMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEE-----G--KLLTASNLYSEMLSKGIEPDIITYTVLINGLYG----K 702 (850)
Q Consensus 634 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~ 702 (850)
+..+|..+|+++.+.|.++...+...+...|..- - +...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 4555555555555555322222233333333321 0 1235666666666554 33333344433322 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 043440 703 GQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEG---------------NLQEAFRLHNEMLDKGLVPDDTTYD 763 (850)
Q Consensus 703 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~g~~p~~~~~~ 763 (850)
.+.++|...|++..+.|. ......+. .+...| +...|...+......|.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 356677777777776652 33333333 444444 6667777777777666554444333
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.13 E-value=6.4 Score=35.19 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043440 636 EAALDMHRKMINDGIPCDLQTYTTLIAGLLEEG-----------KLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQ 704 (850)
Q Consensus 636 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 704 (850)
++|+.-|++++..+ |....++..+..+|...+ .+++|.+.|+++.+ ..|+..+|+.-+...
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 34444444444443 333355555555554332 24555556666655 467777777666554
Q ss_pred HHHHHHHHHHHHhCC
Q 043440 705 LENARKIFDEMNRKC 719 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~ 719 (850)
.+|-++..++.+.+
T Consensus 124 -~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 124 -AKAPELHMEIHKQG 137 (186)
T ss_dssp -HTHHHHHHHHHHSS
T ss_pred -HhhHHHHHHHHHHH
Confidence 24555555555543
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.09 E-value=1.6 Score=28.12 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 725 FIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.+++.|+..|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888888888888888764
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.67 E-value=62 Score=36.62 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHc
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGD-------LSSALELLDKIKED 299 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~ 299 (850)
..-.++--|.++|.+++|.++..+.... .......+...+..|....+ -++...-|++..+.
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4455677788999999999998554332 23334456667777766432 22455556665543
No 315
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.84 E-value=32 Score=35.98 Aligned_cols=106 Identities=16% Similarity=0.084 Sum_probs=60.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-C--------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCh--
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSG-I--------ANVFTYNDLLAWLCKRGKVSEACNLWQKMVS-------SGVRPSV-- 409 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~-~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~-- 409 (850)
..+.-.|++.+|.+++...--.. + .....||.|...+.+.|.+..+..+|.+.++ .|.+|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788888887775432111 1 1234467888888888888887777777664 2333321
Q ss_pred ---------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043440 410 ---------VSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYF 455 (850)
Q Consensus 410 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (850)
.+|| ..-.|...|+.-.|.+.|.+.... +..++..|..|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1232 222344556666666666665543 3445566666665554
No 316
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.77 E-value=69 Score=36.28 Aligned_cols=23 Identities=17% Similarity=0.536 Sum_probs=14.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 733 GYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 733 ~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
-+...|++++|++.++++ ++-|.
T Consensus 514 ~~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHHcCCHHHHHHHHHhC---CCCCC
Confidence 346788999998776665 46664
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.20 E-value=8.8 Score=41.00 Aligned_cols=150 Identities=20% Similarity=0.172 Sum_probs=95.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043440 282 KQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYK 361 (850)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (850)
-.|+++.|..++..+. ...-+.++..+.++|-.++|+++- ..||.. .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-----Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQR-----FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhhh-----hhhhhhcCcHHHHHH
Confidence 3567777776655542 223445666677777777666532 223221 233457788888888
Q ss_pred HHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 362 LFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVT 441 (850)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (850)
+..+. .+..-|..|..+..+.|++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|..
T Consensus 659 la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 659 LAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 77665 3667788888888899999888888887654 456666677777766555555555554432
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 442 PNVVTYSVLIDGYFKQGDAERAFDVLDQM 470 (850)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (850)
|...-+|...|+++++.+++..-
T Consensus 725 ------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------chHHHHHHHcCCHHHHHHHHHhc
Confidence 23334566788888888877543
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.12 E-value=13 Score=39.81 Aligned_cols=29 Identities=17% Similarity=0.120 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 043440 200 DARAYRMVIQALCRKPNLKVACGLVKEMR 228 (850)
Q Consensus 200 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 228 (850)
++.-|..|..+....|++..|.+.|.+..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 44445555555555555555555554433
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.00 E-value=37 Score=32.47 Aligned_cols=127 Identities=9% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCChHHHHHHHHHhhhhcCCC--CcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCC
Q 043440 17 RNEPVSAFEYFKRVERRRGFL--KSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDL 94 (850)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (850)
..+|++|++-|..+...-|-. -...+.-.++.|-.+.++ |++.+....+++.- +.+. ..+ ..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~-~~eMm~~Y~qlLTY---------IkSA---VTr---Ny 103 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN-YKEMMERYKQLLTY---------IKSA---VTR---NY 103 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH---------HHHH---Hhc---cc
Confidence 458999999999886554422 236788899999999986 88877665554420 0000 000 12
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043440 95 DSGVFSYLLRSYVRADRINDAVDCCNGMIE-----RDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNL 159 (850)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 159 (850)
+....+.++..-....+.+--..+++..+. .+-..|..+-..++..|+..|.+.+-..++.++.+
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 222333333333333333222222222211 11222444455677788888887777777776654
No 320
>PRK09687 putative lyase; Provisional
Probab=84.88 E-value=44 Score=33.27 Aligned_cols=233 Identities=14% Similarity=0.061 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCcCHhhH
Q 043440 512 PKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEI----DLALKMRNEMMNEGLQLDATAY 587 (850)
Q Consensus 512 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 587 (850)
+|.......+.++...|. +++......+.. .+|...-...+.++.+.|.. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344444445555555543 233333333333 23555555556666666652 4566666655332 2455555
Q ss_pred HHHHHHHHccCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 588 GSLINGFCRRRD-----MESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIA 662 (850)
Q Consensus 588 ~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 662 (850)
...+.++...+. ...+...+..... .++..+-...+.++.+.++ ++|+..+-.+++. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 455555544432 1233333333333 2355666667777777776 5677777777763 34444445555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043440 663 GLLEEG-KLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQ 741 (850)
Q Consensus 663 ~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 741 (850)
++...+ ....+...+..++. .++..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555543 24466677777664 4677777778888888887 56777777776642 2 234677888888885
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHhhh
Q 043440 742 EAFRLHNEMLDKGLVPDDTTYDILVNGK 769 (850)
Q Consensus 742 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 769 (850)
+|+..+.++.+.. ||...-..-+.+|
T Consensus 252 ~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6888888888643 3544444434433
No 321
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.73 E-value=29 Score=31.05 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 292 LLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI 371 (850)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 371 (850)
.++.+.+.++.|+...+..+++.+.+.|++..-.++ +..++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 334444455666666666666666666665443333 23333333322222221111 1222233333333321
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 372 ANVFTYNDLLAWLCKRGKVSEACNLWQKM 400 (850)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (850)
-...+..++..+...|++-+|+++.+..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1113445555666666666666666554
No 322
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=84.72 E-value=53 Score=34.05 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043440 659 TLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYF 735 (850)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 735 (850)
.|+.-|...|+..+|...++++-- .+-...+++.+++-+.-+.|+-..-+++++..-..| ..|-+.|-.+|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~ 585 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhh
Confidence 455666677777777776666421 112234566677777767776666666666655543 344445555543
No 323
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.55 E-value=79 Score=35.92 Aligned_cols=250 Identities=7% Similarity=-0.026 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHH
Q 043440 422 VKNMDEAYSVFSEMLEKR-VTPN--VVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVA 498 (850)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 498 (850)
..+.+.|..++....... ..+. ..++..+.......+...+|...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 355677777777764432 2211 1223333333333332456666666544332 2333334444445577788877
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 043440 499 WDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDL-ALKMRNEMMN 577 (850)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 577 (850)
...+..|....- ......-=+..++...|+.++|...|+.+.. ..+ -|..+.. .+.|..-. ....... ..
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAA--QRLGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHH--HHcCCCCCCCCCCCCc-hh
Confidence 777777654321 1222223345665667888888888888643 122 2222211 12221100 0000000 00
Q ss_pred cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC
Q 043440 578 EGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND-----GIPC 652 (850)
Q Consensus 578 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~ 652 (850)
..+..+ .-..-+..+...|....|...+..+... .+......+...-.+.|.++.++......... .+|
T Consensus 403 ~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp- 476 (644)
T PRK11619 403 SALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP- 476 (644)
T ss_pred hhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC-
Confidence 000000 0112234456678888888888777764 24444555555566777777777665433221 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043440 653 DLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDII 690 (850)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 690 (850)
..|...+..+.+.-.++.++-.---..++++.|+..
T Consensus 477 --~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 477 --LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred --cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 134445555555555555554333334556666644
No 324
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=36 Score=31.98 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=6.2
Q ss_pred ChhHHHHHHHHH
Q 043440 216 NLKVACGLVKEM 227 (850)
Q Consensus 216 ~~~~A~~~~~~~ 227 (850)
++++|.++|.+.
T Consensus 29 k~eeAadl~~~A 40 (288)
T KOG1586|consen 29 KYEEAAELYERA 40 (288)
T ss_pred chHHHHHHHHHH
Confidence 555555555443
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.45 E-value=2.8 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 725 FIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.+|..++..|...|++++|.+.|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677888888889999999999888876
No 326
>PRK09687 putative lyase; Provisional
Probab=84.36 E-value=46 Score=33.11 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=24.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 339 SVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
+..+....+.++.+.|+ ..|+..+-+.++.+. .....+.++...|+. +|+..+..+.+
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 44444444444444444 334444444443211 122344444444443 34444444443
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.12 E-value=1.8 Score=26.01 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
+-.++.++.+.|++++|.+.|+++++.-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4456667777777777777777776643
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.05 E-value=0.044 Score=48.31 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=24.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043440 277 MKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYT 329 (850)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (850)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544333344455555555555544444444443
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.65 E-value=82 Score=35.41 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043440 347 LCGFLKAQLLEEAYKLFDEAVDSGI--ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKN 424 (850)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 424 (850)
++.+.+.+.+++|+..-+.....-+ .-...+...+..+...|++++|-...-.|... +..-|...+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 3455566666666666555444333 13345566666666677777777666666643 44555555555554444
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 043440 425 MDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFK 456 (850)
Q Consensus 425 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (850)
.... +.-+.......+...|..++..+..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 3322 1112222112344455555555544
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.60 E-value=2.7 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043440 133 SMNSVLKALVRRNLIDEAKEFYNKMN 158 (850)
Q Consensus 133 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 158 (850)
+++.++..|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45666666666666666666666554
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.53 E-value=65 Score=34.16 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 548 NVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMIN 627 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 627 (850)
|.....+++..+.......-...+..+|+..| -+...+..++.+|... ..+.-..+++++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33444445555555555555555555555432 2444555555555555 334445555555554333 4444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPC-----DLQTYTTLIAGLLEEGKLLTASNLYSEMLS-KGIEPDIITYTVLINGLYG 701 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~l~~~~~~ 701 (850)
-|.+ ++.+.+..+|.++...=++. -...|.-|...- ..+.+..+.+..+... .|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 55555555555555432110 012233332211 2334444444444443 1222233344444455566
Q ss_pred CCCHHHHHHHHHHHHhC
Q 043440 702 KGQLENARKIFDEMNRK 718 (850)
Q Consensus 702 ~g~~~~A~~~~~~~~~~ 718 (850)
..++++|++++..+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66666666666666554
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.33 E-value=84 Score=35.32 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=32.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCC--CChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 043440 211 LCRKPNLKVACGLVKEMRDMGRV--PSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDL 286 (850)
Q Consensus 211 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 286 (850)
+.+.+.+++|+.+.+.....-.. +..+....+..+.-.|++++|-...-.|.. -+...|-.-+..+...+..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 33444555555444433322111 111455555555555566655555555543 2344444444444444433
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.26 E-value=10 Score=34.70 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 043440 653 DLQTYTTLIAGLLEEGKLLTA 673 (850)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A 673 (850)
|+..+.+|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444433
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.25 E-value=47 Score=32.36 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 273 ATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMK 332 (850)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (850)
.+...+.|..+|.+.+|.++.++.+.. .+.+...+-.++..+...|+--.+.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556777888888888888888775 34466677778888888888777777777764
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.62 E-value=31 Score=29.88 Aligned_cols=52 Identities=17% Similarity=-0.013 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 352 KAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
..++.+++..++..+.-..|.....-..-+..+...|++.+|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4677777777777777776655554455556677788888888888887765
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.36 E-value=9.8 Score=35.05 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHH
Q 043440 343 VNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGV--RPSVVSYNNMIL 417 (850)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 417 (850)
.+..+..+.+.+.+++|+...+.-++..|.|......+++.||-.|++++|..-++-.-.... .+-..+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344456667777888888888888888787777788888888888888888877776654322 222345555554
No 337
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=24 Score=33.16 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=72.6
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 043440 594 FCRRRDMESACKLFAELLEVGLSPNT-VVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDL-QTYTTLIAGLLEEGKLL 671 (850)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 671 (850)
|....+++.|+..|.+.+.. .|+. ..|..-+.++.+..+++.+..--.+.++. .||. -....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55566777788877777665 3444 34455666777777777777777777765 3443 34445566666777778
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043440 672 TASNLYSEMLS----KGIEPDIITYTVLINGLYGKGQLENARKIFDEM 715 (850)
Q Consensus 672 ~A~~~~~~~~~----~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (850)
+|+..+.++.. ..+.+....+..|..+-.+.=...++..+.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88877777743 234444455666665544444455555555544
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.73 E-value=24 Score=34.55 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 043440 269 NLVVATSLMKGYYKQGDLSSALELLDKIKED---GLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNS 345 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 345 (850)
...+...++..-....+++.+...+-++... ...|+. +-.+.++.+. .-+.++++.++..=+.-|+-||.++.+.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 3334444444444455666666666665432 011111 1112222222 2245566666666666677777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSG 370 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (850)
+++.+.+.+++.+|..+...++...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777666666666655543
No 339
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=81.71 E-value=47 Score=31.23 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=10.3
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 043440 629 FRNLGNMEAALDMHRKMI 646 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~ 646 (850)
+...|++.+|+..++.-.
T Consensus 202 fta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTV 219 (333)
T ss_pred hhccchHHHHHHHHHHHh
Confidence 445666666666555433
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.58 E-value=55 Score=31.95 Aligned_cols=55 Identities=22% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043440 661 IAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMN 716 (850)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (850)
...|..+|.+.+|.++.++.+... +.+...+..|+..+...|+--.|.+.++++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344555566666666655555531 3344455555555566665555555555543
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.12 E-value=68 Score=32.76 Aligned_cols=79 Identities=8% Similarity=0.079 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 043440 601 ESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLE---EGKLLTASNLY 677 (850)
Q Consensus 601 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 677 (850)
+.-+.+++++++.++ .+...+..++..+.+..+.++..+.|++++... +.+...|...++.... .-.+++...+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344555666655533 355555666666666666666666666666653 3355555555554332 22344555555
Q ss_pred HHHH
Q 043440 678 SEML 681 (850)
Q Consensus 678 ~~~~ 681 (850)
.+.+
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5444
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.06 E-value=15 Score=33.76 Aligned_cols=72 Identities=11% Similarity=-0.092 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhCCCHHHH
Q 043440 636 EAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK---GIEPDIITYTVLINGLYGKGQLENA 708 (850)
Q Consensus 636 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A 708 (850)
++|++.|-++...+.-.++.....|+..|. ..+.++++.++-++++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555543344444444444333 44555566655555542 2244555666666666666666555
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.02 E-value=81 Score=33.52 Aligned_cols=180 Identities=13% Similarity=0.192 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 043440 200 DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMK 278 (850)
Q Consensus 200 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 278 (850)
|.....+++..+..+..+.-...+-.++...| .+. .+..++.+|... ..+.-..+++++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44556667777777777777777777777743 333 788888888877 556677778877776544 5555555665
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHh
Q 043440 279 GYYKQGDLSSALELLDKIKEDGLSP--N---KVTFAVLIEGCCTNGKVEKGYELYTQMKH-MGIKPSVFIVNSLLCGFLK 352 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 352 (850)
-|-+ ++.+.+...|.++...=++. + ...|..+... -..+.+....+...+.. .|...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5544 77788888888876541211 1 1134433321 13455666666555543 3333344555556667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHh
Q 043440 353 AQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCK 386 (850)
Q Consensus 353 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (850)
..++++|++++..+++.+..|..+...++..+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 8888888888888888777777777777666543
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.67 E-value=19 Score=35.21 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 216 NLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMM 262 (850)
Q Consensus 216 ~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 262 (850)
+.++++.++..-+.-|+.|+. ++..+++.+.+.+++.+|.++...|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444444544 55555555555555555544444443
No 345
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.43 E-value=2.6 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=11.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhh
Q 043440 101 YLLRSYVRADRINDAVDCCNGMIE 124 (850)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~ 124 (850)
.++.+|.+.|++++|+..|++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444455555444444433
No 346
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.41 E-value=62 Score=31.81 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043440 128 IPLLRSMNSVLKALVRRNLIDEAKEFYN 155 (850)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 155 (850)
..+......++..|.+.|++.+|+..|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3455667778888888888888877763
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.72 E-value=4.3 Score=24.56 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhh
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIE 124 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 124 (850)
++..+...|...|++++|...|+++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555566666666655555443
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.22 E-value=15 Score=28.93 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 600 MESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLI 661 (850)
Q Consensus 600 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 661 (850)
.=+..+-++.+....+.|++....+.+.+|.+.+++..|+++|+.+..+. ..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 33556666677777777888888888888888888888888888777542 22344555544
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.42 E-value=44 Score=29.00 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=21.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
.++.+++..++..+.-..|.....-..-+..+...|++.+|.++|+++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34444444444444442222222222333334444555555555555443
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.39 E-value=84 Score=32.14 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 043440 566 DLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRN---LGNMEAALDMH 642 (850)
Q Consensus 566 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 642 (850)
+.-+.+++++++.++ .+...+..++..+.+..+.++..+.++++....+. +...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 455566666666533 35666666777777777777777777777766333 56666666654433 22355555555
Q ss_pred HHHHH
Q 043440 643 RKMIN 647 (850)
Q Consensus 643 ~~~~~ 647 (850)
.+.++
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55443
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.33 E-value=1.4e+02 Score=34.28 Aligned_cols=224 Identities=10% Similarity=0.016 Sum_probs=120.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHH
Q 043440 453 GYFKQGDAERAFDVLDQMENAKISPTDY-------TSNIIIN-GLCKAGRTSVAWDKLKKMVEK----GFIPKCLTYNSI 520 (850)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l 520 (850)
......++.+|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456778888888888876543232222 2333322 234568888888888877764 123345667777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHHcCC--HHHHHHHHHHHHHcC---CC---cCHhhH
Q 043440 521 IDGFVKEDDMISALTVYREMHESGLSPNVVTYTIL-----INGFCRKNE--IDLALKMRNEMMNEG---LQ---LDATAY 587 (850)
Q Consensus 521 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~--~~~A~~~~~~~~~~~---~~---~~~~~~ 587 (850)
..+..-.|++++|..+..+..+..-.-++..+... ...+...|+ +.+....+....... .+ +-.-++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 78888889999999888776654323333333222 223445663 233333333332210 01 112333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH----HHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHH
Q 043440 588 GSLINGFCRRRDMESACKLFAEL----LEVGLSPNTVVY--NSMINGFRNLGNMEAALDMHRKMINDGI----PCDLQTY 657 (850)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~ 657 (850)
..+..++.+ ++.+..-.... ......|-.... ..|+..+...|++++|.....++..... .++..+-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 33333222222 222222222222 3677778889999999998888876522 2232222
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHH
Q 043440 658 TTLIAG--LLEEGKLLTASNLYSE 679 (850)
Q Consensus 658 ~~l~~~--~~~~g~~~~A~~~~~~ 679 (850)
...+.. ....|+.+++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 223322 2456777777766655
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.26 E-value=6.8 Score=29.41 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=28.2
Q ss_pred hCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 043440 701 GKGQLENARKIFDEMNRKCLTP--NVFIFNTLIAGYFKEGNLQEAFRL 746 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 746 (850)
...+.++|+..|++.+++-..| --.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776653332 123355566677777777776655
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.14 E-value=3.4 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 043440 99 FSYLLRSYVRADRINDAVDCC 119 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~ 119 (850)
...|...+...|++++|..++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344555555566666555554
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.04 E-value=5.6 Score=26.12 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=11.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Q 043440 695 LINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
|..+|...|+.+.|.+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555555555554443
No 355
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.76 E-value=9.4 Score=40.59 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=68.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043440 315 CCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEAC 394 (850)
Q Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (850)
+...|+...|...+............+....|.+...+.|...+|-.++.+.+......+.++..+..+|....+++.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34567777777777766543322233445556666677777777777777777666566677777788888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHH
Q 043440 395 NLWQKMVSSGVRPSVVSYNNMILAHC 420 (850)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (850)
+.|++..+...+ +...-+.+...-|
T Consensus 697 ~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 888877776433 4445555554444
No 356
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=76.14 E-value=58 Score=29.17 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 273 ATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMK 332 (850)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (850)
+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+|+...
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566666666666666554221 11122334444444444444444444333
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.37 E-value=8.1 Score=25.38 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 240 NLIGACVKHGNLTEAFRLKDEMMSC 264 (850)
Q Consensus 240 ~l~~~~~~~g~~~~A~~~~~~~~~~ 264 (850)
.|+.+|...|+.+.|+.++++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3555566666666666666665543
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.10 E-value=68 Score=30.41 Aligned_cols=118 Identities=9% Similarity=0.005 Sum_probs=69.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCH
Q 043440 558 GFCRKNEIDLALKMRNEMMNEGLQLDA-TAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTV-VYNSMINGFRNLGNM 635 (850)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 635 (850)
.|....+++.|+..+.+.+.. .|+. .-|+.-+-++.+..+++.+..--.+.++. .||.+ ....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 345556788888877777765 3444 44566667777788888777666666553 45544 333455556677778
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 636 EAALDMHRKMIND----GIPCDLQTYTTLIAGLLEEGKLLTASNLYSE 679 (850)
Q Consensus 636 ~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 679 (850)
++|+..+.+.... .+++.......|..+--+.=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888888877432 3333444555555443333333444444443
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.93 E-value=4.4 Score=22.90 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~ 748 (850)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555566666666655543
No 360
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.08 E-value=26 Score=27.63 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 323 KGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAV 367 (850)
Q Consensus 323 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (850)
++++-++.+...++.|++.+..+-+.+|-+.+++.-|+.+|+.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555444
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.77 E-value=26 Score=32.46 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=34.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 207 VIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 207 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
.+..+.+.+.+.+|+...++-++..+........+++.||-.|++++|..-++-.-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344555666666666666666665444333666666666777777766665555443
No 362
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.73 E-value=87 Score=30.07 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=45.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC----C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH
Q 043440 589 SLINGFCRRRDMESACKLFAELLEVGLS----P-------NTVVYNSMINGFRNLGNMEAALDMHRKMIND-GIPCDLQT 656 (850)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~~~~----p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 656 (850)
.|...|...+.+.+-.++++++...-.. . =...|..=|..|....+-..-..+|++.+.. .--|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4555566666666666666555432100 0 1234555566666666666666666665543 11233333
Q ss_pred HHHHH----HHHHhcCCHHHHHHHHHHH
Q 043440 657 YTTLI----AGLLEEGKLLTASNLYSEM 680 (850)
Q Consensus 657 ~~~l~----~~~~~~g~~~~A~~~~~~~ 680 (850)
...+- .+..+.|.+++|..-|-++
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHH
Confidence 32221 2234556666665544433
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.43 E-value=44 Score=28.37 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCC---HHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGN---LTEAFRLKDEMMS-CGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 237 ~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
+...+..++.+..+ ..+.+.+++.+.+ ..+.........|.-++.+.+++++++++.+.+.+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666666666654 4556677777775 22333344455566677777788888877777776
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.09 E-value=6.3 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 726 IFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
+|..++.++...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456667777777777777777777664
No 365
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.99 E-value=1.2e+02 Score=31.52 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhc
Q 043440 693 TVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSR 771 (850)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 771 (850)
..|+.-|...|++.||...++++--. +-...+.+.+++.+..+.|+-+.-+.++++....|+. |-+.+-.++.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
Confidence 45778889999999999999887432 1125667899999999999988888888888766643 34445455443
No 366
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.89 E-value=97 Score=30.21 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=42.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 373 NVFTYNDLLAWLCKRGKVSEACNLWQKMVS----SGVRPSVVS-YNNMILAHCTVKNMDEAYSVFSEMLEKRVT 441 (850)
Q Consensus 373 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (850)
-..+|..+...|++.++.+.+.+...+..+ .|.+.|+.. -..+.-.|....-.++-++..+.+.++|..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 456788888888888888888877665543 455555542 222333344444456666666777776544
No 367
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.72 E-value=1.8e+02 Score=32.74 Aligned_cols=253 Identities=14% Similarity=0.105 Sum_probs=124.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 043440 454 YFKQGDAERAFDVLDQMENAKISPTDYTS----NIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDD 529 (850)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 529 (850)
....|+..+|.+++.-.+-..-. ....| ..+.-++...|......+.+...++..-.+....-..|.-+....|.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~-~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAG-EGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeeccccchHHHHhhhhCCccCC-CCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 34567777777777655433111 11111 12233445566666677777766654332222222233334444443
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCH-HHHHH-HHHHHHHcCCCcCHhhH-HHHHHHHHccCCHHHHH
Q 043440 530 MISALTVYREMHESGLSPNVVTYT--ILINGFCRKNEI-DLALK-MRNEMMNEGLQLDATAY-GSLINGFCRRRDMESAC 604 (850)
Q Consensus 530 ~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~-~~A~~-~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~ 604 (850)
.+ .++|+.+.+.-...+.++-. .+.-+++-.|.. .+|++ ++.-..+. +...... -.+.-++.--|+.++|.
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ET--QHeki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQET--QHEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhh--hHHHHHHHHHHhHHHHHhhhhhhhH
Confidence 22 34455444332222222211 112223333322 12222 33322221 1011111 11223344556677888
Q ss_pred HHHHHHHHcCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 605 KLFAELLEVGLSPNTVV----YNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEM 680 (850)
Q Consensus 605 ~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 680 (850)
.+.+++.... |+.. .-+++.+|+..|+.....+++.-.+.. ...|+.-+..+.-++.-..+++....+.+-+
T Consensus 522 ~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~lL 597 (929)
T KOG2062|consen 522 PLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSLL 597 (929)
T ss_pred HHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHHH
Confidence 8888887642 3221 224566788888877666666655543 3556666666666666677888887777776
Q ss_pred HHCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHh
Q 043440 681 LSKGIEPDIITYTV--LINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 681 ~~~g~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
.++ +.|-...-.+ |.-+|+-.| ..+|+.+++-|.+
T Consensus 598 ses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 598 SES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 664 3443332222 333444444 4678999998876
No 368
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=71.69 E-value=92 Score=29.42 Aligned_cols=85 Identities=9% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043440 590 LINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGK 669 (850)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 669 (850)
-+..|+..-++.-|....+++++ ...+..+++ -|.+..+.+--.++.+-....+++-+...+..++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 44556666677666666666654 122222332 2555554444444444444445555555555554 446788
Q ss_pred HHHHHHHHHHHHH
Q 043440 670 LLTASNLYSEMLS 682 (850)
Q Consensus 670 ~~~A~~~~~~~~~ 682 (850)
..+|+..++.-..
T Consensus 208 MRQalNnLQst~~ 220 (333)
T KOG0991|consen 208 MRQALNNLQSTVN 220 (333)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777766543
No 369
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.48 E-value=1.3 Score=38.93 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=24.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043440 662 AGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFD 713 (850)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (850)
..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444455555555555544333344455555555555554444444444
No 370
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.75 E-value=80 Score=29.87 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
.-.++....+.|+.++|.++|.+++..+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3345556666777777777777776543
No 371
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.47 E-value=50 Score=26.28 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043440 279 GYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (850)
.+...|+|++|..+.+.+ +.||...|..|... +.|-.+++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 344556666666555555 45555555444332 4444444444444444443
No 372
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.01 E-value=49 Score=26.04 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 362 LFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
-++..+..+|.|..+...+...+...|++++|++.+-.+++.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344445555566666666666666666666666666666654
No 373
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.90 E-value=3.5e+02 Score=35.39 Aligned_cols=152 Identities=12% Similarity=0.064 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 043440 171 VMMRACLKEDTTEEAEKYFRDAKALGV--KLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKH 248 (850)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (850)
.+..+-.+.+.+.+|...++.-..... ......|..+...|..-+++|....+...-. .+......+......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHHHHhh
Confidence 445556677888888888887311100 1122334444447888888887777766311 122445556667778
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChhHHHHH
Q 043440 249 GNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLI-EGCCTNGKVEKGYEL 327 (850)
Q Consensus 249 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~ 327 (850)
|+++.|...|+.+++.+++ ....++-++......|.++..+...+-.... ..+....++++. .+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8888888888888876532 3556666666666777777777766665543 333333444332 344566666666655
Q ss_pred HH
Q 043440 328 YT 329 (850)
Q Consensus 328 ~~ 329 (850)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
No 374
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.45 E-value=31 Score=27.57 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 325 YELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAV 367 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (850)
++-++.+...++.|++.+..+.+.+|-+.+++.-|+.+|+.+.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444444444444444444444455555544444443
No 375
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.92 E-value=3.4 Score=40.79 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 043440 667 EGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFI-FNTLIAGYFKEGNLQEAFR 745 (850)
Q Consensus 667 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 745 (850)
.|.+++|++.|...+... ++....|..-..++.+.++...|++-+...++ +.||... |-.-..+....|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 466777777777776642 34455566666666777777777777777666 4444322 4444455556677777777
Q ss_pred HHHHHHHCCCCCCHHHH
Q 043440 746 LHNEMLDKGLVPDDTTY 762 (850)
Q Consensus 746 ~~~~~~~~g~~p~~~~~ 762 (850)
.+....+.++.+....|
T Consensus 204 dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHhccccHHHHHH
Confidence 77777777765554433
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.71 E-value=1.3e+02 Score=30.10 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 043440 599 DMESACKLFAELLEVGLSPNTVVYNSMINGFRNLG-------NMEAALDMHRKMINDGIPCDLQTYTTLIAGLLE----E 667 (850)
Q Consensus 599 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 667 (850)
+..+|...|.+..+.|..+...+...+...|..-. +...|...|.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 55666666666666554322222333333333321 2236777777777665 33444444444432 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---------------CHHHHHHHHHHHHhCCCC
Q 043440 668 GKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKG---------------QLENARKIFDEMNRKCLT 721 (850)
Q Consensus 668 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 721 (850)
.+.++|...|++..+.|. ......+. .+...| +...|...+......+..
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 366777777777777653 22222233 344444 556666666666655433
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.37 E-value=1.3e+02 Score=29.38 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=14.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 043440 484 IIINGLCKAGRTSVAWDKLKKM 505 (850)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~ 505 (850)
.++..+.+.|.+.+|+.+...+
T Consensus 130 Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 4566677777777776655433
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.19 E-value=20 Score=38.31 Aligned_cols=167 Identities=15% Similarity=0.093 Sum_probs=108.4
Q ss_pred hhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043440 286 LSSALELLD-KIKEDGLSPNKVTFAVLIEGCCTN--GKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKL 362 (850)
Q Consensus 286 ~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (850)
++.-.+.++ +|-.+.-.|+..+...++.-.... ...+-|-.++-.|.. ...|--...|...-.....|+...|.+.
T Consensus 551 ~~~~~~~l~~r~d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~c 629 (886)
T KOG4507|consen 551 LSYLVKELEVRMDLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIAC 629 (886)
T ss_pred HHHHHHHhhhcccccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHH
Confidence 444444443 233333456666665555443322 223334445544443 2233333333323333456999999999
Q ss_pred HHHHHHCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 363 FDEAVDSGI-ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVT 441 (850)
Q Consensus 363 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 441 (850)
+..+....| ...+..-.|.+.+.+.|...+|-.++.+.+... ...+.++..+.+++....+++.|++.|++..+...
T Consensus 630 l~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~- 707 (886)
T KOG4507|consen 630 LQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT- 707 (886)
T ss_pred HHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-
Confidence 999888777 555566778888889999999999999888765 33556777888999999999999999999998743
Q ss_pred CCHHhHHHHHHHHH
Q 043440 442 PNVVTYSVLIDGYF 455 (850)
Q Consensus 442 ~~~~~~~~l~~~~~ 455 (850)
.+.+.-+.|...-|
T Consensus 708 ~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 708 KCPECENSLKLIRC 721 (886)
T ss_pred CChhhHHHHHHHHH
Confidence 36666666665555
No 379
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.04 E-value=1.7e+02 Score=30.79 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhC----CCHHHH---HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043440 667 EGKLLTASNLYSEMLSKGIEPDII----TYTVLINGLYGK----GQLENA---RKIFDEMNRKCLTPNVFIFNTLIAGYF 735 (850)
Q Consensus 667 ~g~~~~A~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~----g~~~~A---~~~~~~~~~~~~~p~~~~~~~l~~~~~ 735 (850)
.|++++|+.++-.+.. +.||.. -|..++..+-.. |..-.. +++.++++-.+ ..|......-.---.
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 787 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFD-SENAYALKYAALNAM 787 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeec-cchHHHHHHHHhhHh
Confidence 5778888888776655 678765 234444443321 111111 11222222110 012222111111123
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 043440 736 KEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 736 ~~g~~~~A~~~~~~~~~~ 753 (850)
...++..|+++++++.+-
T Consensus 788 ~~~~~~~~~~~~~~~~~~ 805 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKV 805 (831)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456788899999988764
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.34 E-value=10 Score=21.81 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMI 123 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~ 123 (850)
+..++..|...|++++|...|...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 381
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.01 E-value=1e+02 Score=29.17 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 694 VLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
.+.....+.|+.++|.+.|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555677777777777777654
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.67 E-value=77 Score=30.88 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 043440 626 INGFRNLGNMEAALDMHRKMIND--GIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLY--- 700 (850)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~--- 700 (850)
|.++...+++.+++...-+-.+. .+||.+. ..=|-.|.+.|......++-...++..-..+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56677777777776655444433 2333332 2233346677777777777666665322223334555554443
Q ss_pred --hCCCHHHHHHHH
Q 043440 701 --GKGQLENARKIF 712 (850)
Q Consensus 701 --~~g~~~~A~~~~ 712 (850)
=.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777776665
No 383
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.29 E-value=87 Score=26.73 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 686 EPDIITYTVLINGLYGKGQ---LENARKIFDEMNRKCLTP--NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 686 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
.++..+--.+.+++.+..+ +.+.+.+++.+.+.. .| .-....-|.-++.+.|++++++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 4556666677777776654 567778888887622 23 33444456668888889999999888888743
No 384
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.15 E-value=1.4e+02 Score=29.09 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHh----CCCCCCHHhHH
Q 043440 378 NDLLAWLCKRGKVSEACNLWQKM----VSSGVRPSVVSYNNMI-LAHCTVKNMDEAYSVFSEMLE----KRVTPNVVTYS 448 (850)
Q Consensus 378 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 448 (850)
..++..+.+.|.+.+|+.+...+ .+-.-+|+..+...+= ..|-...+..++..-+..... .-+||....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 45677888889988888765544 3334444444332221 234444444444443333221 12455555545
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHh
Q 043440 449 VLIDGY--FKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 449 ~l~~~~--~~~g~~~~A~~~~~~~~~ 472 (850)
-++++. |...++.-|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 555553 344567777777766654
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.32 E-value=17 Score=27.43 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=20.2
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHH
Q 043440 213 RKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFR 256 (850)
Q Consensus 213 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 256 (850)
...+.+.|+..+..+++.-..+.. ++..|+.+|+..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444333322 44444555555555544443
No 386
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.92 E-value=1.9e+02 Score=30.13 Aligned_cols=147 Identities=10% Similarity=0.032 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 043440 57 HRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNS 136 (850)
Q Consensus 57 ~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 136 (850)
|+++...+..++.. +++..++..+ + ..|-...++..+...+..+|+.+.|.++.++++- ++..
T Consensus 10 Y~~~q~~F~~~v~~---~Dp~~l~~ll----~--~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~ 72 (360)
T PF04910_consen 10 YQEAQEQFYAAVQS---HDPNALINLL----Q--KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFER 72 (360)
T ss_pred HHHHHHHHHHHHHc---cCHHHHHHHH----H--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHH
Confidence 67777766666653 2444333222 2 2356677788888999999999999988877531 1111
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 043440 137 VLKALV-------RRNLIDEAKEFYNKMNLKGLGVDSVTIRV---MMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRM 206 (850)
Q Consensus 137 l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 206 (850)
.....+ ..|... +. -...-|...|.+ .+..+.+.|-+..|+++.+-+...++..|+.....
T Consensus 73 ~~~~~F~~~~~~~~~g~~r--------L~-~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll 143 (360)
T PF04910_consen 73 AFHPSFSPFRSNLTSGNCR--------LD-YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL 143 (360)
T ss_pred HHHHHhhhhhcccccCccc--------cC-CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence 111010 000000 00 000112233332 33456777888888888888777776667766666
Q ss_pred HHHHHH-cCCChhHHHHHHHHHHH
Q 043440 207 VIQALC-RKPNLKVACGLVKEMRD 229 (850)
Q Consensus 207 l~~~~~-~~g~~~~A~~~~~~~~~ 229 (850)
.|+.|+ +.++++--+++.+....
T Consensus 144 ~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 144 FIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHhh
Confidence 676654 55677766666666544
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.38 E-value=76 Score=25.35 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=33.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
..+...|+|++|..+.+.+ ..||.+.|-.|. -.+.|..+++..-+.+|-.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3456777777777776655 346777666553 346666666666666666555
No 388
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.75 E-value=29 Score=23.98 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043440 730 LIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
++-++.+.|++++|.++.+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 34445555555555555555554
No 389
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.90 E-value=2.8e+02 Score=31.36 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=71.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHh----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043440 558 GFCRKNEIDLALKMRNEMMNEGLQLDAT----AYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLG 633 (850)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 633 (850)
++.--|+-++|..+.+++.... |+. -.-++..+|+-.|+-....+++.-.+.. +..|+.-...+.-++.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 3445667778888888887642 222 1234556777778777766666665542 3445555555555666677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 634 NMEAALDMHRKMINDGIPCDLQTY--TTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 634 ~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
+++....+.+-+.+. ..|.+..- ..|.-+|+-.| ..+|+.+++-|..
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 788777777766655 24444322 23333444444 4678888888875
No 390
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.70 E-value=71 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
....+...+...|++++|++.+-++++
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 391
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.83 E-value=3.1e+02 Score=31.29 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=49.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cCHhhHHHHHHHHHccCC
Q 043440 522 DGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQ--LDATAYGSLINGFCRRRD 599 (850)
Q Consensus 522 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 599 (850)
..+...|....|...+..+... .+......+...-.+.|.++.++.........+.. .-+..|...+..+.+.-.
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~ 491 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKG 491 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcC
Confidence 3444566666776666666553 23333444444445566666655544332211000 011235566666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH
Q 043440 600 MESACKLFAELLEVGLSPNTVVY 622 (850)
Q Consensus 600 ~~~A~~~~~~~~~~~~~p~~~~~ 622 (850)
++.++-.----.+.++.|+..+.
T Consensus 492 v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 492 IPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred CCHHHHHHHHHHhcCCCCCCccC
Confidence 66655433334466666665543
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.21 E-value=3.6e+02 Score=31.76 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHcCCCh--hHHHHHHHHHHHCCCCCCh-hHH--
Q 043440 168 TIRVMMRACLKEDTTEEAEKYFRDAKALG---VKLDARAYRMVIQALCRKPNL--KVACGLVKEMRDMGRVPSR-VYT-- 239 (850)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~-~~~-- 239 (850)
-|..|+..|...|..++|++++.+..... -..-...+-.++.-+.+.+.. +-..++-....+..+.... ++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36777888888888888888888877632 011112233345555555533 5555555555554332211 111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 043440 240 ----------NLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYK 282 (850)
Q Consensus 240 ----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 282 (850)
..+-.|......+-++.+++.+.......+....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455566666777777777665555566666777766654
No 393
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=58.62 E-value=95 Score=24.97 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 693 TVLINGLYGKGQLE--NARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 693 ~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.+--..|....+++ +..+-++.+...++-|++.+..+.+.+|.+.+++.-|+++++-+..
T Consensus 12 ~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 12 DARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333444444333 5556666666667777777777778888888888888888777764
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.74 E-value=7.7 Score=38.43 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043440 597 RRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNL 676 (850)
Q Consensus 597 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 676 (850)
.|.++.|++.|...+..+ ++....|..-.+++.+.++...|+.-+...++.+ +....-|-.-..+....|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHH
Confidence 344555555555555442 2234444444444555555555555555444432 11222232223333344555555555
Q ss_pred HHHHHHCC
Q 043440 677 YSEMLSKG 684 (850)
Q Consensus 677 ~~~~~~~g 684 (850)
+....+.+
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 55554433
No 395
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=56.29 E-value=2.1e+02 Score=28.76 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043440 635 MEAALDMHRKMINDGIPCDLQTYTTLIAGLL------EEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENA 708 (850)
Q Consensus 635 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 708 (850)
+++++.++.+....+ .|.+......|.++- ..-+|..-..+|+-+.. +.|++++--+-.-+..+.--.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Confidence 455556666655555 355554444444432 12345555555655555 344444322222233344445666
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 709 RKIFDEMNRKC-LTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 709 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
+.+.+-+...+ +..-...+..-...+.+.|+.++|...|++.+..-
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 66666665542 21112234445666777788888888888877643
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.94 E-value=29 Score=20.22 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHCCCCCHhHHHHHH
Q 043440 355 LLEEAYKLFDEAVDSGIANVFTYNDLL 381 (850)
Q Consensus 355 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 381 (850)
+.+.|..+|++++...+.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555554444444444443
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.88 E-value=27 Score=36.66 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 352 KAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
+.+.++.|+.++.++++..+.++..|..-..++.+.+++..|+.=+..+++.
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 3445555555555555555544444444445555555555555555554443
No 398
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.79 E-value=3.8e+02 Score=31.06 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=31.8
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 209 QALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
+.|...|+++.|.++-..- |+. ++..-+..|.+.+++..|.+++.++.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3455677777777655322 333 666667777777788888877777643
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.21 E-value=46 Score=26.40 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=34.1
Q ss_pred HhCCCHHHHHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 700 YGKGQLENARKIFDEMNRKC---LTPN-----VFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.+.|++.+|.+.+.+..+.. ..+. ..+.-.++......|++++|+..+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46677777766655554321 1111 23344566777888999999999999874
No 400
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.94 E-value=2.8e+02 Score=29.31 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=14.8
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 043440 701 GKGQLENARKIFDEMNRKC 719 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~ 719 (850)
...++..|+++++++.+-+
T Consensus 788 ~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4567889999999987754
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.70 E-value=44 Score=23.10 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=9.2
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 043440 278 KGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~ 298 (850)
-++.+.|++++|++..+.+++
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444444
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.10 E-value=3.6e+02 Score=30.30 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHh
Q 043440 735 FKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVN 767 (850)
Q Consensus 735 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 767 (850)
.+.|++.+|.+.+-.+++..+-|...-...|.+
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp ---------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 345888888888888877776665444444433
No 403
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.65 E-value=1.1e+02 Score=25.95 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 706 ENARKIFDEMNRKCLTPN-VFIFNTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 706 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (850)
+++.++|..|.++++-.. ...|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345667777777665442 3346666777777777777777665
No 404
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.53 E-value=27 Score=36.63 Aligned_cols=55 Identities=11% Similarity=0.025 Sum_probs=22.0
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 209 QALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
.++.+.+++..|+.=+..+++..+.-...|..-+.++.+.+.+.+|...|+....
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 3334444444444444444443211111333334444444444444444444433
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.88 E-value=1.4e+02 Score=29.16 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-----cCChhHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYK-----QGDLSSALELL 293 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 293 (850)
+...-|-.|.+.|.+..+.++-...++..-..+...|.+++..|.. .|.+++|+++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4444455555666665555555555543222233334444444333 45555555554
No 406
>PRK10941 hypothetical protein; Provisional
Probab=51.83 E-value=1.8e+02 Score=28.67 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=34.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
+-.+|.+.++++.|+.+.+.++...|.++.-+..-+-.|.+.|.+..|..-++..++.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445555566666666666666666655555555566666666666666655555544
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.68 E-value=85 Score=24.88 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 630 RNLGNMEAALDMHRKMIND----GIPC----DLQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
.+.|++.+|++.+.+..+. +... -..+...+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556666665555444432 1111 012222334444555666666666655554
No 408
>PRK10941 hypothetical protein; Provisional
Probab=51.14 E-value=1.8e+02 Score=28.79 Aligned_cols=58 Identities=5% Similarity=-0.094 Sum_probs=25.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 275 SLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
.+-.+|.+.++++.|+++.+.+.... +.++.-+--.+-.|.+.|.+..|..-++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33344444555555555555544421 11222333333444444444444444444433
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.01 E-value=2e+02 Score=30.28 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=33.0
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 043440 593 GFCRRRDMESACKLFAELLEVGLSPNTV--VYNSMINGFR--NLGNMEAALDMHRKMIND 648 (850)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 648 (850)
.+...+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777765 444433 3344444443 355667777777766654
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.91 E-value=2.6e+02 Score=29.35 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=40.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHh--hHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 043440 557 NGFCRKNEIDLALKMRNEMMNEGLQLDAT--AYGSLINGFC--RRRDMESACKLFAELLEV 613 (850)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 613 (850)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999986 554444 4455555554 456788999999987764
No 411
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.47 E-value=4.8e+02 Score=31.42 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCC--CCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043440 204 YRMVIQALCRKPNLKVACGLVKEMRDMGRV--PSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKG 279 (850)
Q Consensus 204 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 279 (850)
|-.+++.+-+.+..+++.++-..+++.-+. |.. +++.+.+-....|.+-+|...+-.-.. ......+...++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHH
Confidence 445555555556666666665555553211 111 555555555555665555544322111 01112234455555
Q ss_pred HHhcCChh
Q 043440 280 YYKQGDLS 287 (850)
Q Consensus 280 ~~~~g~~~ 287 (850)
++.+|+++
T Consensus 1064 Lfecg~l~ 1071 (1480)
T KOG4521|consen 1064 LFECGELE 1071 (1480)
T ss_pred HHhccchH
Confidence 55555543
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.27 E-value=2.7e+02 Score=27.39 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043440 303 PNKVTFAVLIEGCCTNGKVEKGYELYT 329 (850)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (850)
.++.....+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 455666777777777777777776553
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.15 E-value=2.2e+02 Score=27.47 Aligned_cols=38 Identities=13% Similarity=-0.067 Sum_probs=16.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043440 486 INGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDG 523 (850)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 523 (850)
+....+.++++++...++++...+...+..--+.+..+
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsva 45 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVA 45 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 33444455555555555555554433333333333333
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.88 E-value=88 Score=27.38 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=28.3
Q ss_pred HHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 043440 227 MRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQG 284 (850)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 284 (850)
+.+.|...+.....++..+...++.-.|..+++++.+.++.-+..|-..-++.+...|
T Consensus 12 lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455555555555555555555555555555555544444443333334443333
No 415
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.61 E-value=40 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
.-.++.+|...|++++|.++.+++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345556666666666666665554
No 416
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.54 E-value=3e+02 Score=27.68 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=7.3
Q ss_pred cCChhHHHHHHHHHH
Q 043440 318 NGKVEKGYELYTQMK 332 (850)
Q Consensus 318 ~g~~~~A~~~~~~~~ 332 (850)
..++.+|-.+|-...
T Consensus 194 vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSV 208 (393)
T ss_pred HHhHHHHHHHHHHHc
Confidence 344555555554443
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.44 E-value=3.7e+02 Score=28.68 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCC
Q 043440 501 KLKKMVEKGFIPK 513 (850)
Q Consensus 501 ~~~~~~~~~~~~~ 513 (850)
+.+-+++.|..++
T Consensus 217 iv~~Ll~~gad~n 229 (413)
T PHA02875 217 IVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHHCCcCcc
Confidence 3444445555544
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.66 E-value=3.8e+02 Score=28.59 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=18.8
Q ss_pred HHHHHhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 043440 397 WQKMVSSGVRPSVVS---YNNMILAHCTVKNMDEAYSVFSEMLEKRVTPN 443 (850)
Q Consensus 397 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 443 (850)
.+.+.+.|..++... ..+.+...+..|+.+ +.+.+++.|..++
T Consensus 184 v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 334445555554322 123333334445543 3444455555554
No 419
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.14 E-value=3e+02 Score=27.29 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 127 IIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLK-GLGVDSVTIRVMMRACLKEDTTEEAEKYFR 190 (850)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (850)
-.++..+.-.++..+++.+++.+-..+++..... ++..|...|...++...+.|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555666777777777777777777766544 555677777777777777777765555444
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.86 E-value=62 Score=30.04 Aligned_cols=56 Identities=14% Similarity=-0.023 Sum_probs=50.0
Q ss_pred CCCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCC
Q 043440 16 CRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGS 72 (850)
Q Consensus 16 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~ 72 (850)
...|+.....+.+|+++--...|++.+|..++.++...|+ .++|...+.++..-.|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~-~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGD-PEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Confidence 6788999999999998877788999999999999999996 9999999999887655
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.57 E-value=2e+02 Score=27.81 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHH
Q 043440 240 NLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYK-QGDLSSALELLDKI 296 (850)
Q Consensus 240 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 296 (850)
.++....+.|+++++...+.++...+...+..-.|.+..+|-. -|....+.+++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3455555556666666666666555555555555555444422 23334444444444
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.55 E-value=1.3e+02 Score=29.83 Aligned_cols=118 Identities=8% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 043440 147 IDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKE 226 (850)
Q Consensus 147 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 226 (850)
..+|..+|++.++.+-. .|-+..+...--...+.+.+++...-++.-..+.-...+.|+..+|.+.|+.
T Consensus 232 i~~AE~l~k~ALka~e~-----------~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGET-----------IYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHH
Q 043440 227 MRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATS 275 (850)
Q Consensus 227 ~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 275 (850)
+.+.-+-... +...|+.++....-+.+...++.+.-....+.+.....+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.50 E-value=56 Score=32.28 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYD 763 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 763 (850)
|+.-|..-.+.|++++|+++++++...|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3455555555555555555555555555544344443
No 424
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.43 E-value=4.9e+02 Score=29.29 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 236 RVYTNLIGACVKHGNLTEAFRLKDE 260 (850)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~A~~~~~~ 260 (850)
..|=..+..+.-.|.++.|.+++..
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4444477778888888888888744
No 425
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.41 E-value=3e+02 Score=33.42 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=95.4
Q ss_pred HccCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHH
Q 043440 595 CRRRDMESACK------LFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKM-------INDGIPCDLQTYTTLI 661 (850)
Q Consensus 595 ~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~ 661 (850)
...|.+.+|.+ ++......--++....|..+...+.+.|+.++|+..-.+. ...+.+.+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33455555555 5553332222335567788888889999999998865543 2334344556777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCC--CCHHHH
Q 043440 662 AGLLEEGKLLTASNLYSEMLSK-----G--IEPDIITYTVLINGLYGKGQLENARKIFDEMNRK-----CLT--PNVFIF 727 (850)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~~~~~-----g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--p~~~~~ 727 (850)
..+...++...|...+.+.... | .+|...+++.+-..+...++++.|+++.+.+.+. |.+ ++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 6677777888888877777651 2 2334445555555555568888999988887653 211 145556
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 043440 728 NTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 728 ~~l~~~~~~~g~~~~A~~~~~ 748 (850)
..+.+.+...|++..|....+
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHh
Confidence 777777766666666554433
No 426
>PRK12798 chemotaxis protein; Reviewed
Probab=44.06 E-value=4.1e+02 Score=27.96 Aligned_cols=155 Identities=10% Similarity=0.029 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHcCCChhHH
Q 043440 144 RNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA-CLKEDTTEEAEKYFRDAKALGVK--LDARAYRMVIQALCRKPNLKVA 220 (850)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 220 (850)
.|+-.+|...+..+.....++....+..|+.+ .....++..|+.+|+...-.-+. ..+.....-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 57778888887777666556666666666655 45566778888888776543211 1222334444455667777776
Q ss_pred HHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 221 CGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLTEAFRLKDEMMSC-GKPMNLVVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 221 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
..+-.+...+-..... .+..+...+.+.++-..- ..+..++.. ........|..+...-...|+.+-|.-.-.+.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 6666655554322211 223333333333321111 112222221 22223446666666666777777766666665
Q ss_pred HHc
Q 043440 297 KED 299 (850)
Q Consensus 297 ~~~ 299 (850)
...
T Consensus 284 ~~L 286 (421)
T PRK12798 284 LKL 286 (421)
T ss_pred HHh
Confidence 553
No 427
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=3.3e+02 Score=26.78 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMM----SCGKPMNLVVA-TSLMKGYYKQGDLSSALELLDKIKEDGLS 302 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (850)
++..++.-|++.++.+.+.++..+.. ..|...|+... ..|.-.|....-.++.++..+.|.+.|-.
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 55555555666665555555443332 23433333321 12223333344455556666666665543
No 428
>PRK12798 chemotaxis protein; Reviewed
Probab=43.42 E-value=4.2e+02 Score=27.89 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=111.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc-CCChhHHHHHHHHHHHCCCCCC--h-hHHHHHHHHHhcCCHH
Q 043440 177 LKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR-KPNLKVACGLVKEMRDMGRVPS--R-VYTNLIGACVKHGNLT 252 (850)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~ 252 (850)
+-.|+.++|...+..+......+....|-.|+.+-.- ..+...|+.+|++..-.-|..- + ....-+-.....|+.+
T Consensus 123 Y~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 123 YLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred HHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4679999999999988776666666677777765544 4589999999998776433322 2 6666677778889988
Q ss_pred HHHHHHHHHHhCCCCCcHHH---HHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 253 EAFRLKDEMMSCGKPMNLVV---ATSLMKGYYKQGDLSSALELLDKIKED-GLSPNKVTFAVLIEGCCTNGKVEKGYELY 328 (850)
Q Consensus 253 ~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (850)
++..+-...... +..++.. +..+...+.+.++-..- ..+..+... ....-...|..+.+.-.-.|+.+-|.-.-
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 877666555443 1223322 22333344443322211 223333332 12223456777777888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHCC
Q 043440 329 TQMKHMGIKPSVFIVNSLLCGF-----LKAQLLEEAYKLFDEAVDSG 370 (850)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~ 370 (850)
++.+...-..+ .-...+..| .-..++++|...+..+....
T Consensus 281 ~~A~~L~~~~~--~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 281 ERALKLADPDS--ADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHHHhccCCC--cchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 87776532211 112222222 22345666666666655443
No 429
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.38 E-value=9.3e+02 Score=31.94 Aligned_cols=152 Identities=10% Similarity=0.042 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 043440 136 SVLKALVRRNLIDEAKEFYNKMNLKGL--GVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR 213 (850)
Q Consensus 136 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (850)
.+..+-++.|.+.+|.-++++-..... .-....+-.+...|..-+++|....+...-.. +...+ .-+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 566778889999999999988421111 11223344455588889999988887764221 22222 23444557
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHH-HHHHHhcCChhHHHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSL-MKGYYKQGDLSSALEL 292 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 292 (850)
.|++..|...|+++.+.++.....+..++......|.++..+-..+-.... ..+....|+.+ +.+-.+.++++.-...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 799999999999999866554447787888878888888888766655443 23344444433 3444677777776666
Q ss_pred HH
Q 043440 293 LD 294 (850)
Q Consensus 293 ~~ 294 (850)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 55
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.32 E-value=66 Score=23.13 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=6.8
Q ss_pred HHHHHhCCCHHHHHHHHHH
Q 043440 696 INGLYGKGQLENARKIFDE 714 (850)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~ 714 (850)
+.++...|++++|.+++++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333333333333333333
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.93 E-value=68 Score=29.79 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 710 KIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 710 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
+..++..+ ..|++.+|..++.++...|+.++|.++.+++...
T Consensus 132 ~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 132 EWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344444 3467777777777777777777777777777653
No 432
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.47 E-value=5.9e+02 Score=30.72 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHH
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDSGIA----NVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV----VSYN 413 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ 413 (850)
-|...+..+-+.+-.+.+.++-..+++.-++ -..+++.+.+.....|.+-+|.+.+-+ .||. ....
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 3556667777778888888877777765542 234567777777777887777665543 2333 3455
Q ss_pred HHHHHHHhcCCHHH------------HHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 043440 414 NMILAHCTVKNMDE------------AYS-VFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDV 466 (850)
Q Consensus 414 ~l~~~~~~~g~~~~------------A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 466 (850)
.++..++..|.++. ... +++..-+.........|..|-..+...+++.+|-.+
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 56666666666542 222 222222221111223345455555666666665543
No 433
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.45 E-value=1.6e+02 Score=23.41 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 705 LENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILV 766 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 766 (850)
.++-.+.++++..++....+-....|.-.|...|+.+.|.+-|+.=.. .-|...+|.-++
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFL 112 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHH
Confidence 334455666766655444445566777788888999988888887544 556766665544
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.89 E-value=1.2e+02 Score=29.56 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 693 TVLINGLYGKGQLENARKIFDEMNRK----C-LTPNVFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
..+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.++.+.+.-+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556667777777777777776431 1 11133445566667777777777766655543
No 435
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.85 E-value=7e+02 Score=30.08 Aligned_cols=123 Identities=7% Similarity=-0.041 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTE-AFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGC 315 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (850)
+....+.++...+..+. +...+..+.+ .++.......+.++.+.|..+.+...+..+++ .++...-...+.++
T Consensus 758 VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL 831 (897)
T PRK13800 758 VRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARAL 831 (897)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHH
Confidence 55555555555554332 3344444443 24555666666666666665444344444432 23333333444555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 316 CTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDS 369 (850)
Q Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (850)
...+. +++...+..+++ .|+..+-...+.++.+.+.-..+...+..+++.
T Consensus 832 ~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 832 AGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred Hhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 55544 344455555443 355555555555665543334555566555553
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.35 E-value=2e+02 Score=30.23 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043440 657 YTTLIAGLLEEGKLLTASNLYSEMLSK------GIEP-DIITYTVLINGLYGKGQLENARKIFDEMN 716 (850)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (850)
...|++.++-.|++..|+++++.+--. .+++ ...++..+.-+|.-.+++.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777666666543210 1111 22245555556666666666666666654
No 437
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.30 E-value=3.9e+02 Score=27.90 Aligned_cols=54 Identities=20% Similarity=0.073 Sum_probs=29.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHH--HhcCCHHHHHHHHHH
Q 043440 138 LKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMM----RAC--LKEDTTEEAEKYFRD 191 (850)
Q Consensus 138 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~--~~~g~~~~A~~~~~~ 191 (850)
+.-+++.+++..|..+|+++.++.+.|........+ .+| -..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 334566777777777777777765544443322222 222 134456666666654
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.03 E-value=2.3e+02 Score=24.02 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 043440 114 DAVDCCNGMIERDIIPLL-RSMNSVLKALVRRNLIDEAKEFYNK 156 (850)
Q Consensus 114 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 156 (850)
++..+|..|...++.... ..|...+..+...|++++|..+|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777776655443 3356666667777777777777654
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.36 E-value=28 Score=29.43 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 666 EEGKLLTASNLYSEMLSKGIEPDIITYTVLIN 697 (850)
Q Consensus 666 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 697 (850)
+.|.-.+|-.+|++|++.|.+|| .|+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 34555566666666666666665 3455544
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.89 E-value=37 Score=28.74 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCc
Q 043440 249 GNLTEAFRLKDEMMSCGKPMN 269 (850)
Q Consensus 249 g~~~~A~~~~~~~~~~~~~~~ 269 (850)
|.-.+|..+|.+|++.|.+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333444444444444444443
No 441
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.53 E-value=4.1e+02 Score=26.39 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSC-GKPMNLVVATSLMKGYYKQGDLSSALEL 292 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 292 (850)
+....+..++..+++..-.++++..... ++..|...|..+|+.....|+..-..++
T Consensus 204 vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 204 VIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 4444455555555555555544444332 3333444455555555555544433333
No 442
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.41 E-value=2.2e+02 Score=28.64 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=53.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043440 591 INGFCRRRDMESACKLFAELLEVGL---SPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEE 667 (850)
Q Consensus 591 i~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 667 (850)
.+-|.+..++..|...|.+-++... ..+.+.|+.-..+....|++..|+.-..+.+..+ |...-.|..=..++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHHH
Confidence 3446666777777777776665422 2235566666666666777777777777766654 33444444444555566
Q ss_pred CCHHHHHHHHHHHH
Q 043440 668 GKLLTASNLYSEML 681 (850)
Q Consensus 668 g~~~~A~~~~~~~~ 681 (850)
.++++|..+.++..
T Consensus 167 e~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHhhhh
Confidence 66666665555543
No 443
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.82 E-value=83 Score=19.62 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 043440 726 IFNTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~ 748 (850)
.+-.++-.+...|++++|..+|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45567778889999999999944
No 444
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.77 E-value=2.1e+02 Score=24.09 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=23.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 678 SEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 678 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
+.+....+.|++.+...-+.+|-+-+++..|+.+|+-+..+
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33344445566666666666666666666666666655543
No 445
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.49 E-value=2.3e+02 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 603 ACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND 648 (850)
Q Consensus 603 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (850)
..+-++.+...++.|++.....-+.++.+.+++..|+++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555566667777777777778888888888888888777665
No 446
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.04 E-value=7.7e+02 Score=29.17 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 377 YNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 67777788888888888888877765
No 447
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.90 E-value=8e+02 Score=28.69 Aligned_cols=85 Identities=8% Similarity=0.090 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043440 241 LIGACVKHGNLTEAFRLKDEMMSCGKPMNL--VVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTN 318 (850)
Q Consensus 241 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (850)
+=..|...|+++.|.++-..- |+. .++..-.+.|.+.+++..|-+++.++.+ .|..+.--+...
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEI 429 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhc
Confidence 445677888999888765432 222 2344445677788899999999988832 444445455566
Q ss_pred CChhHHHHHHHHHHHCCCCCCH
Q 043440 319 GKVEKGYELYTQMKHMGIKPSV 340 (850)
Q Consensus 319 g~~~~A~~~~~~~~~~~~~~~~ 340 (850)
.+.+.-..++.+=++ .++|..
T Consensus 430 ~~~~~L~~~L~KKL~-~lt~~d 450 (911)
T KOG2034|consen 430 NQERALRTFLDKKLD-RLTPED 450 (911)
T ss_pred CCHHHHHHHHHHHHh-hCChHH
Confidence 666633333333333 234443
No 448
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.90 E-value=4.2e+02 Score=25.49 Aligned_cols=58 Identities=16% Similarity=-0.004 Sum_probs=32.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 207 VIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSC 264 (850)
Q Consensus 207 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 264 (850)
.-+.+...|++-++++.-.+++...+.+..+|..-+.+.+..-+.++|..-|..+++.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3344445566666666666666543322226666666666666666666666666554
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.31 E-value=2.9e+02 Score=23.44 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 358 EAYKLFDEAVDSGI--ANVFTYNDLLAWLCKRGKVSEACNLWQ 398 (850)
Q Consensus 358 ~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 398 (850)
++.++|..|...+. .-+.-|...+..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444333 233334444444444444444444443
No 450
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.94 E-value=90 Score=18.91 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Q 043440 705 LENARKIFDEMNRKCLTPNVFIFN 728 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~~~p~~~~~~ 728 (850)
++.|..+|++.+. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3445555555554 234444443
No 451
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.70 E-value=3.2e+02 Score=30.31 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHH
Q 043440 201 ARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR------VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVAT 274 (850)
Q Consensus 201 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 274 (850)
...||.....+ +..+|..+++.|..-.+.-+.... ....|.-+|.+..+++.|.+++++..+.++. ++.+-.
T Consensus 355 ~iLWn~A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~ 432 (872)
T KOG4814|consen 355 TLLWNTAKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQL 432 (872)
T ss_pred HHHHHhhHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 043440 275 SLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
.+..+....|.-++|+........
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh
No 452
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.64 E-value=5.7e+02 Score=26.65 Aligned_cols=57 Identities=7% Similarity=0.039 Sum_probs=33.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 043440 312 IEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL-KAQLLEEAYKLFDEAVD 368 (850)
Q Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 368 (850)
+..+.+.|-+..|.++.+-+...+..-|+.-....|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455666777777777777766654445555555555553 55666666666555443
No 453
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.51 E-value=6.3e+02 Score=30.98 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=63.9
Q ss_pred HHHHHhcCCHHHHHH------HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH-------HcCCCCCHHHH
Q 043440 242 IGACVKHGNLTEAFR------LKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIK-------EDGLSPNKVTF 308 (850)
Q Consensus 242 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~ 308 (850)
.......|.+.+|.+ ++......-.+.....|..+...+.+.|+.++|+..-.+.. .....-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344445556666655 55533322233445567777777778888888777654431 11112223345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 309 AVLIEGCCTNGKVEKGYELYTQMKHM-----G--IKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVD 368 (850)
Q Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (850)
..+.-.....++...|...+.+.... | .+|...+.+.+-..+...++++.|.++.+.+..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55554444555666666666555432 1 112222333333333444556666666555544
No 454
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.40 E-value=6.2e+02 Score=27.01 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHc---CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043440 285 DLSSALELLDKIKED---GL-SPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAY 360 (850)
Q Consensus 285 ~~~~A~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (850)
..++...++.+.... |. ..+......++... .|+...++.+++.+... ...=..+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~----------------~~~It~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG----------------VDSITLELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc----------------cCCCCHHHHH
Q ss_pred HHHHHHHHCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHH
Q 043440 361 KLFDEAVDSGIANVFTYNDLLAWLCKR---GKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVK-----NMDEAYSVF 432 (850)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~ 432 (850)
.++.............+..++.++.+. .+.+.|+..+..|++.|..|....-..++.++-..| ...-|...+
T Consensus 214 ~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 214 EALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred HHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 433 SEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (850)
+....-|.+-........+-.++.+-+...+...+....+
T Consensus 294 ~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 294 DAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 455
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.16 E-value=5.3e+02 Score=26.16 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc------CCChhHHHHHHHHHHHCCCCCChhH
Q 043440 165 DSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR------KPNLKVACGLVKEMRDMGRVPSRVY 238 (850)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~ 238 (850)
|..-|+..+ .+++..++++....+. |.++.....|.++-. .-+|..-..+|.-+....+.|-++.
T Consensus 263 Dr~lW~r~l--------I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~L 333 (415)
T COG4941 263 DRSLWDRAL--------IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTL 333 (415)
T ss_pred chhhhhHHH--------HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEee
Confidence 555565543 4677888888777664 677777777665532 2378888888888888766666554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043440 239 TNLIGACVKHGNLTEAFRLKDEMMSCGKPMNL-VVATSLMKGYYKQGDLSSALELLDKIKED 299 (850)
Q Consensus 239 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (850)
|.-+ +..+..-.+.++.+.+.+...+--... ..+..-...+.+.|+.++|..-|++....
T Consensus 334 NRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 334 NRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 4433 334444566777777776654211122 23445567788899999999999998874
No 456
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.83 E-value=91 Score=23.50 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 705 LENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
+++|+.++.+..+.+ ..|++++|+.+|...++
T Consensus 3 l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHH
Confidence 456666666665432 45777777777777654
No 457
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.70 E-value=2.5e+02 Score=28.31 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 043440 169 IRVMMRACLKEDTTEEAEKYFRDAKALG---VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGAC 245 (850)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (850)
|--=++-|.+..++..|...|..-++.. ...+.+.|+.-..+-...|++..|+.--...++..+...-+|..-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344555677777777777777655432 3334566766666666667777777777777764433322666667777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 043440 246 VKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~ 263 (850)
....++++|..+.++...
T Consensus 164 ~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 777777777776666543
No 458
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=32.22 E-value=54 Score=34.19 Aligned_cols=99 Identities=23% Similarity=0.269 Sum_probs=46.3
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHH
Q 043440 676 LYSEMLSKGIEPDII---TYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIA----GYFKEGNLQEAFRLHN 748 (850)
Q Consensus 676 ~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~ 748 (850)
+++.+.+.|+.|+.+ +-.+++.++...+..++-.+++.... .+...+...-. .+...+....-...++
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQ 175 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccchHHHHHH
Confidence 455566677777765 34455555555555565555554310 01111100000 0011111222334445
Q ss_pred HHHHCCCCCCHHHHHHHHhhhhcCCchHHhh
Q 043440 749 EMLDKGLVPDDTTYDILVNGKSRSDTWARKK 779 (850)
Q Consensus 749 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 779 (850)
++.+.|.-.|...+...+..+...=.|+||-
T Consensus 176 r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy 206 (391)
T cd07229 176 RLLREGYFLDVKVLEEFVRANLGDLTFEEAY 206 (391)
T ss_pred HHHcCCCcccHHHHHHHHHHHcCCCcHHHHH
Confidence 5555665566666666665555544555553
No 459
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.92 E-value=1.6e+02 Score=19.77 Aligned_cols=31 Identities=6% Similarity=0.262 Sum_probs=14.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 043440 178 KEDTTEEAEKYFRDAKALGVKLDARAYRMVI 208 (850)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 208 (850)
+.|-..++...++.|.+.|+..++..+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555544444444443
No 460
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.82 E-value=3.2e+02 Score=24.99 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=11.2
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 043440 314 GCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 314 ~~~~~g~~~~A~~~~~~~~~ 333 (850)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555544
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.67 E-value=2.2e+02 Score=27.77 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043440 624 SMINGFRNLGNMEAALDMHRKMIND----GI-PCDLQTYTTLIAGLLEEGKLLTASNLY 677 (850)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 677 (850)
.++.-|.+.|++++|+++|+.+... |. .+...+...+..++...|+.++.+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3555566666666666666665422 11 112233344444445555555544443
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.54 E-value=6.3e+02 Score=26.47 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDE 260 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~ 260 (850)
.+.-++..|..+|+++.|++.+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhh
Confidence 444455555555555555555554
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.41 E-value=4.3e+02 Score=25.15 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 043440 616 SPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPC---DLQTYT--TLIAGLLEEGKLLTASNLYSEML 681 (850)
Q Consensus 616 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 681 (850)
.+...-+|.|+--|.-...+.+|-+.|..-. |+.+ +..++. .-|......|+.++|++..++..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3344445555555544444555555444322 2222 222221 22333455566666665555543
No 464
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=31.09 E-value=7.4e+02 Score=27.27 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=67.9
Q ss_pred CCCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCC-CChHHHHHHHHHHhhhCCCCC
Q 043440 16 CRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSE-PTSAAIIDHLIETAKRFDFDL 94 (850)
Q Consensus 16 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 94 (850)
.+-+.+.=..+++.+..+-+...+.+++..+++.- .| ..+++.++|++++..+.+ .....+ ..+ .|..+
T Consensus 176 kri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a--~G-s~RDalslLDq~i~~~~~~It~~~v-~~~------lG~~~ 245 (515)
T COG2812 176 KRLDLEEIAKHLAAILDKEGINIEEDALSLIARAA--EG-SLRDALSLLDQAIAFGEGEITLESV-RDM------LGLTD 245 (515)
T ss_pred cCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc--CC-ChhhHHHHHHHHHHccCCcccHHHH-HHH------hCCCC
Confidence 45667788888888888888888888888777763 45 479999999999976543 222222 111 24433
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 043440 95 DSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLL 131 (850)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 131 (850)
...+. .++.+. -.|+..+++..++.+.+.|..|..
T Consensus 246 ~~~~~-~~~~~i-~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 246 IEKLL-SLLEAI-LKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred HHHHH-HHHHHH-HccCHHHHHHHHHHHHHhCcCHHH
Confidence 33333 333322 457788888888888777776543
No 465
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.90 E-value=2.6e+02 Score=21.85 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 043440 423 KNMDEAYSVFSEML 436 (850)
Q Consensus 423 g~~~~A~~~~~~~~ 436 (850)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33333444443333
No 466
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.75 E-value=3.4e+02 Score=23.07 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHH
Q 043440 672 TASNLYSEMLSKGIEPDII-TYTVLINGLYGKGQLENARKIFD 713 (850)
Q Consensus 672 ~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 713 (850)
+..++|..|..+|+-.... .|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777766655433 45555556667777777777765
No 467
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.43 E-value=7.8e+02 Score=27.19 Aligned_cols=171 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHhcCCChHHHHHHHHHHH---------------
Q 043440 489 LCKAGRTSVAWDKLKKMVEKGFIPK------------CLTYNSIIDGFVKEDDMISALTVYREMH--------------- 541 (850)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------- 541 (850)
+.....+++|...|.-.+.. ..|+ +.+...+.+.+...|+.+.|..+.++.+
T Consensus 248 ~~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred eecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Q ss_pred -----HcCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH-ccCCHHHHHHHHHHHHH
Q 043440 542 -----ESGLSPNVVTYTIL---INGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFC-RRRDMESACKLFAELLE 612 (850)
Q Consensus 542 -----~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 612 (850)
....+.|...|.++ +..+.+.|.+..|.+....+......-|+.....+|+.|+ +..+++--+++++....
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred cC---CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043440 613 VG---LSPNTVVYNSMINGFRNLGN---MEAALDMHRKMINDGIPCDLQTYTTLIAGL 664 (850)
Q Consensus 613 ~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 664 (850)
.+ .-||-..-.+++..|..... -+.|...+.++... -+...+-|++.+
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~----~P~vl~eLld~~ 460 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH----HPLVLSELLDEL 460 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh----CcHHHHHHHHhc
No 468
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=30.43 E-value=9.1e+02 Score=28.01 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH---HhcCChhHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGY---YKQGDLSSALELLDKIKE 298 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~ 298 (850)
.+..||..+.+.|++++-...-..|... .+.++..|..-+... ...+...++..+|++.+.
T Consensus 115 ~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 115 QMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 7777888888888777666555555543 233455555444332 223566667777777655
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.42 E-value=1.1e+02 Score=28.85 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=38.5
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 211 LCRKPNLKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCG 265 (850)
Q Consensus 211 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 265 (850)
..+.|+.+.|.+++.++.. +.|.. .|..+...-.+.|+++.|.+.+++.++.+
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4466777778888877776 33443 77777777778888888888888877754
No 470
>PRK09857 putative transposase; Provisional
Probab=30.10 E-value=4.5e+02 Score=26.41 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 693 TVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
..++.-....|+.++-.++++.+.+. .++.....-+++.-+.+.|.-+++++..++|+..|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444566666667777666654 333334445677777778888888899999998888755
No 471
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.07 E-value=98 Score=30.68 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043440 273 ATSLMKGYYKQGDLSSALELLDKIKEDGLSP 303 (850)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (850)
|+..|....+.||+++|++++++..+.|..-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 4456666666666666666666666655543
No 472
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.01 E-value=3.1e+02 Score=22.44 Aligned_cols=79 Identities=13% Similarity=-0.059 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 111 RINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFR 190 (850)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (850)
..++|..+.+.....+. ....+--.-+.++.++|++++| -........||...|.+|.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Q ss_pred HHhhCC
Q 043440 191 DAKALG 196 (850)
Q Consensus 191 ~~~~~~ 196 (850)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
No 473
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.74 E-value=2.7e+02 Score=21.73 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=17.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 043440 386 KRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMD 426 (850)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 426 (850)
..|+.+.|.+++..+. +| +..|..++.++...|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555555 32 223444555555444433
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.90 E-value=2.7e+02 Score=25.15 Aligned_cols=54 Identities=9% Similarity=0.005 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 043440 231 GRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQG 284 (850)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 284 (850)
|...+.....++..+...++.-.|.++++.+.+.++..+..|-..-+..+...|
T Consensus 21 GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 21 NVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333333333333333333344444444444433333333333333333333
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.77 E-value=4e+02 Score=24.39 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 043440 451 IDGYFKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~ 472 (850)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666666666666666655
No 476
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.75 E-value=7.9e+02 Score=26.78 Aligned_cols=102 Identities=8% Similarity=0.098 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCC-CCChHHHHHHHHHHhhhCCCCCCH
Q 043440 18 NEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGS-EPTSAAIIDHLIETAKRFDFDLDS 96 (850)
Q Consensus 18 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 96 (850)
-.+..-...++.+...-|..-+.++...++.. ..| +.+.|.++|++++.... ......+ ..+ .|. .+.
T Consensus 180 ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~G-d~RdAL~lLeq~i~~~~~~it~~~V-~~~------lg~-~~~ 248 (484)
T PRK14956 180 VPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDG-SVRDMLSFMEQAIVFTDSKLTGVKI-RKM------IGY-HGI 248 (484)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCC-hHHHHHHHHHHHHHhCCCCcCHHHH-HHH------hCC-CCH
Confidence 33444455556555555555555655444332 345 48888888888764322 2222221 111 133 244
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 043440 97 GVFSYLLRSYVRADRINDAVDCCNGMIERDIIPL 130 (850)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 130 (850)
..+..++++....+....|+.++.++.+.|..|.
T Consensus 249 ~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 249 EFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 4555555555444444566666666666665543
No 477
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.91 E-value=6.5e+02 Score=25.48 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC
Q 043440 374 VFTYNDLLAWLCKRGKVSEACNLWQKMVS----SGVRPSVVSYNNMIL-AHCTVKNMDEAYSVFSEMLEKRV 440 (850)
Q Consensus 374 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~ 440 (850)
..++......||+.|+-+.|++.+.+..+ .|.+.|++.+..-+. .|....-..+-++..+.+.+.|.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 34566777888888888888877766543 366666654433222 22222223333444444444443
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.83 E-value=1e+03 Score=27.92 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043440 271 VVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLI 312 (850)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 312 (850)
-+..+.+..+.|.+++..|-.+-.++++.++.|....-...+
T Consensus 1085 lalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki 1126 (1202)
T KOG0292|consen 1085 LALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKI 1126 (1202)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 345556677778888888888877777776666654443333
No 479
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.81 E-value=7.6e+02 Score=25.91 Aligned_cols=61 Identities=20% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---h-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 202 RAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPS---R-VYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 202 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
..+.-+..-|..+|+++.|++.|.++++- .... . .+..++.+-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35666777888889999998888885542 1111 1 455566666666666666665555543
No 480
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.48 E-value=5.2e+02 Score=23.90 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 043440 381 LAWLCKRGKVSEACNLWQKMV 401 (850)
Q Consensus 381 ~~~~~~~g~~~~A~~~~~~~~ 401 (850)
+-.....|++++|..-++++.
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 333444555555555555443
No 481
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=25.80 E-value=3.6e+02 Score=28.65 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=10.1
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 043440 103 LRSYVRADRINDAVDCCNG 121 (850)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~ 121 (850)
.--+...|.++.|..++++
T Consensus 125 aadhvAAGsFetAm~LLnr 143 (422)
T PF06957_consen 125 AADHVAAGSFETAMQLLNR 143 (422)
T ss_dssp HHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4445566666666665543
No 482
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.73 E-value=1.8e+02 Score=18.42 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 726 IFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
+|..|+..-...+++++|+.-|++.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 567777778888888888888877764
No 483
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=25.21 E-value=4.7e+02 Score=22.92 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=57.0
Q ss_pred hhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Q 043440 123 IERDIIPLLRS--MNSVLKALVRRNLIDEAKEFYNKMNLKGL-----GVDSVTIRVMMRACLKEDT-TEEAEKYFRDAKA 194 (850)
Q Consensus 123 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 194 (850)
.+.+..++..+ .|.++.-....+++.-...+++.+.-... ..+..+|.+++.+...... --.+..+|.-+.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 33444444433 56666666666777777777766632211 1245567777777755555 4456677777777
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 043440 195 LGVKLDARAYRMVIQALCR 213 (850)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~~ 213 (850)
.+...++.-|..++.++.+
T Consensus 109 ~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cCCCCCHHHHHHHHHHHHc
Confidence 6777777778888877654
No 484
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.19 E-value=9.2e+02 Score=26.32 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043440 688 DIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP 722 (850)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 722 (850)
+...+..++......+....|+.++.++.+.|..|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 44445555555544445567777777777776554
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.81 E-value=3.6e+02 Score=23.66 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 043440 231 GRVPSRVYTNLIGACVKH-GNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQG 284 (850)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 284 (850)
|...+.....++..+... +..-.|.++++.+.+.++..+..|-...+..+...|
T Consensus 12 glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 12 GLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 333333333334443332 233444444444444443333333333333333333
No 486
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=6.5e+02 Score=24.30 Aligned_cols=50 Identities=18% Similarity=0.006 Sum_probs=20.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 353 AQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 353 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
.|++-++++.-.+++...+.|+.+|..-..+.+..=+.++|..-|...++
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444444444444333
No 487
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.31 E-value=1.2e+03 Score=27.39 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043440 705 LENARKIFDEMNRKCLTP--NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDI 764 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 764 (850)
.+.+.++..-.....++| ..-+..+-++.+.+.+++..|..+-.++++.++.|....-..
T Consensus 1063 ~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1063 LEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 334433333333333445 234456667778888888888888888888877776655443
No 488
>PRK09857 putative transposase; Provisional
Probab=24.28 E-value=6.4e+02 Score=25.32 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043440 631 NLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEP 687 (850)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 687 (850)
+.++.++-.++++.+.+. .+.......+++.-+.+.|.-++++++..+|+..|+..
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 334444444444444433 12222333344444444444444555555555555443
No 489
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.23 E-value=3.3e+02 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 380 LLAWLCKRGKVSEACNLWQKMVSSGVR 406 (850)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 406 (850)
++..+.+.++.-.|.++++++.+.++.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 333444443334444444444444333
No 490
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=24.04 E-value=4.3e+02 Score=22.16 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 631 NLGNMEAALDMHRKMIND--GIPC---------DLQTYTTLIAGLLEEGKLLTASNLYSEML 681 (850)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~--~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 681 (850)
..|.+++|..-+++..+. .+|+ |...+..|..++...|++++++.-.+..+
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345666666666555432 3333 34556666677777777777665444443
No 491
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=23.94 E-value=2.2e+02 Score=30.52 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=57.2
Q ss_pred HHHHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 676 LYSEMLSKGIEPDIIT---YTVLINGLYGKGQLENARKIFDEMNRKCL---TPNVFIFNTLIAGYFKEGNLQEAFRLHNE 749 (850)
Q Consensus 676 ~~~~~~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (850)
+++.+.+.++-|+..+ -.+++.+....-..+|-..+|........ ..+..-+...+.-|.++|.+.+-..+-..
T Consensus 192 VlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~ 271 (543)
T KOG2214|consen 192 VLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACV 271 (543)
T ss_pred HHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHH
Confidence 4455555566676653 34555555566667777777765443222 33444567778888889988887777777
Q ss_pred HHHCCCCCCHHHHHHHHhhhhcCCch
Q 043440 750 MLDKGLVPDDTTYDILVNGKSRSDTW 775 (850)
Q Consensus 750 ~~~~g~~p~~~~~~~l~~~~~~~g~~ 775 (850)
|.+.- ... ....+|.+.|+.
T Consensus 272 ~~~~~---~~l---TFqEAY~rTGrI 291 (543)
T KOG2214|consen 272 MKKRL---GNL---TFQEAYDRTGRI 291 (543)
T ss_pred HHHHh---cch---hHHHHHHhhCce
Confidence 76521 122 245677777765
No 492
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.80 E-value=6.5e+02 Score=24.09 Aligned_cols=167 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 113 NDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDA 192 (850)
Q Consensus 113 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 192 (850)
.+-.++++.+...+.. +..-...+...+...+.... ....++....-.-|....--+-.-++...+++++|.+.+
T Consensus 27 ~~L~~Ll~~i~~~~~~-~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L--- 101 (226)
T PF13934_consen 27 NDLRALLDLILSSNVS-LLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL--- 101 (226)
T ss_pred HHHHHHHHHHhcCCcC-HHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh---
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH
Q 043440 193 KALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLV 271 (850)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 271 (850)
..+...+..-..++.++...|+.+.|..+++.... +..+. ....++.. ..++.+.+|..+-+.... .....
T Consensus 102 --~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~---~~~~~ 173 (226)
T PF13934_consen 102 --SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPD---ELRRR 173 (226)
T ss_pred --CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCch---hhhHH
Q ss_pred HHHHHHHHHH----hcCChhHHHHH
Q 043440 272 VATSLMKGYY----KQGDLSSALEL 292 (850)
Q Consensus 272 ~~~~li~~~~----~~g~~~~A~~~ 292 (850)
.+..++..+. +.+..++-..+
T Consensus 174 l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 174 LFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhC
No 493
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.75 E-value=1.4e+02 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 344 NSLLCGFLKAQLLEEAYKLFDEAVDSG 370 (850)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (850)
+.++..+++..-+++++..+.++.+.|
T Consensus 12 ~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 12 NQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333333333333333333333
No 494
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=23.70 E-value=1.3e+02 Score=24.66 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555443
No 495
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=23.56 E-value=1.4e+03 Score=27.72 Aligned_cols=247 Identities=12% Similarity=0.014 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 043440 129 PLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVI 208 (850)
Q Consensus 129 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 208 (850)
++..+-..-+..+.+.+. +.+.+.+.+... .++...-...+.++.+.+........+..+... +|+.+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 444455555666666665 445555556553 335555556655555443322222334344433 4777766777
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 043440 209 QALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLS 287 (850)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 287 (850)
.++...+..+ .. .+.+..+ .++. +....+..+.+.+..+. +..... .++..+-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 7776554222 22 2333332 3444 66666777776665432 223332 356777777778887777654
Q ss_pred H-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 288 S-ALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEA 366 (850)
Q Consensus 288 ~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (850)
. +...+..+.. .+|...-...+.++.+.|....+...+..+++ .+|..+-...+.++.+.+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 3 4555666553 45677777788888888887666555555554 3566667777777877765 4577777777
Q ss_pred HHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 367 VDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
++. ++..+-...+.++.+......+...+..+.+.
T Consensus 847 L~D--~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 847 LTD--PHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred hcC--CCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 754 56667777777777764455677777777763
No 496
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.47 E-value=9e+02 Score=25.63 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=34.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 587 YGSLINGFCRRRDMESACKLFAELLEV--G-----LSPNTVVYNSMINGFRNLGNMEAALDMHRKMI 646 (850)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (850)
...|++.++-.|++..|+++++.+.-. + +.-...++--++-+|...+++.+|++.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777776666554211 0 11123345556666777777777777777655
No 497
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=23.30 E-value=2e+02 Score=23.57 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 376 TYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366667777777777777777776665
No 498
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.10 E-value=1.1e+03 Score=27.30 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-------------CCCCHHHHHHHH
Q 043440 72 SEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERD-------------IIPLLRSMNSVL 138 (850)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~~l~ 138 (850)
.......+...+...++.-|...+......|++.. .|++..|+.+++++...+ ...+......++
T Consensus 176 ~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~Ll 253 (709)
T PRK08691 176 RNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELL 253 (709)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043440 139 KALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVM 172 (850)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (850)
.++.+ ++...++.+++++...|..+....-..+
T Consensus 254 dAL~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 254 TGIIN-QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 499
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=22.77 E-value=6.7e+02 Score=23.90 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHH--HHHHHHHhcCChhHHHHHHHHHH
Q 043440 267 PMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGL-SPNKVTFA--VLIEGCCTNGKVEKGYELYTQMK 332 (850)
Q Consensus 267 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 332 (850)
.+...-.|.|+--|.-...+.+|.+.|..-..... ..|..++. .-|......|+.+.|++....+-
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 34444555666666555556666666655433211 12333332 23445566677777776666553
No 500
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.31 E-value=1.9e+02 Score=27.33 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 351 LKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 351 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.+.++.+.|.+++.+++..-|.....|..+...--+.|+++.|.+-|++..+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34455555556666665555555555666666666666666666666665554
Done!