Query 043440
Match_columns 850
No_of_seqs 880 out of 4681
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 08:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.9E-42 3.4E-46 386.7 43.6 489 268-770 82-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-40 3.9E-45 378.0 42.6 522 176-735 63-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-28 9E-33 259.8 48.5 244 520-770 141-384 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3E-28 1E-32 259.4 48.8 382 102-492 5-386 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.7E-28 9.3E-33 262.4 25.1 186 586-771 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-27 5E-32 256.7 25.0 211 500-736 11-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-24 3.8E-29 241.8 41.1 233 516-754 239-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.9E-25 2.4E-29 243.4 38.3 440 269-718 5-478 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.4E-23 8.3E-28 232.3 37.4 436 307-756 27-494 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.2E-27 221.0 41.2 385 339-778 25-444 (450)
11 1xi4_A Clathrin heavy chain; a 99.9 2.1E-18 7.3E-23 195.0 74.7 731 4-806 512-1406(1630)
12 2y4t_A DNAJ homolog subfamily 99.9 1.7E-22 5.9E-27 219.8 40.8 301 166-473 26-358 (450)
13 3fp2_A TPR repeat-containing p 99.9 1E-22 3.5E-27 227.3 39.4 433 96-543 25-491 (537)
14 1xi4_A Clathrin heavy chain; a 99.9 8.5E-18 2.9E-22 190.2 72.7 636 32-748 717-1440(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 8.6E-20 2.9E-24 191.7 39.7 303 96-403 3-335 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 2.9E-19 1E-23 187.7 41.0 331 409-770 3-351 (359)
17 2xm6_A Protein corresponding t 99.9 6.7E-18 2.3E-22 184.9 50.8 352 339-719 38-433 (490)
18 2xm6_A Protein corresponding t 99.9 1.7E-17 5.7E-22 181.7 52.2 366 359-756 26-435 (490)
19 3hym_B Cell division cycle pro 99.9 3.4E-19 1.2E-23 184.7 32.3 287 93-384 19-314 (330)
20 3hym_B Cell division cycle pro 99.9 4.2E-19 1.4E-23 184.0 32.1 291 130-425 21-321 (330)
21 2ooe_A Cleavage stimulation fa 99.9 2.1E-17 7.1E-22 182.9 45.9 431 293-753 2-492 (530)
22 2ooe_A Cleavage stimulation fa 99.8 3.2E-17 1.1E-21 181.5 45.7 435 224-718 2-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 6.9E-19 2.4E-23 185.5 26.8 259 106-369 35-314 (368)
24 1fch_A Peroxisomal targeting s 99.8 4.8E-19 1.6E-23 186.8 24.0 258 142-402 36-313 (368)
25 4g1t_A Interferon-induced prot 99.8 2.6E-17 9.1E-22 179.9 34.7 386 93-509 48-460 (472)
26 4g1t_A Interferon-induced prot 99.8 1.4E-16 4.9E-21 174.1 38.3 383 340-755 51-461 (472)
27 4eqf_A PEX5-related protein; a 99.8 8.7E-18 3E-22 176.8 26.6 266 480-749 66-352 (365)
28 4eqf_A PEX5-related protein; a 99.8 7.9E-18 2.7E-22 177.1 24.5 233 132-368 66-309 (365)
29 3cv0_A Peroxisome targeting si 99.8 2.3E-17 7.8E-22 170.6 26.0 261 134-399 24-311 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 4.3E-17 1.5E-21 163.7 26.8 251 140-403 8-264 (291)
31 3cv0_A Peroxisome targeting si 99.8 4E-17 1.4E-21 168.8 26.7 262 482-749 24-311 (327)
32 1b89_A Protein (clathrin heavy 99.8 2.6E-17 8.7E-22 167.6 24.1 219 237-490 34-252 (449)
33 1b89_A Protein (clathrin heavy 99.8 6.5E-17 2.2E-21 164.6 24.4 261 133-430 34-303 (449)
34 3mkr_A Coatomer subunit epsilo 99.8 2.3E-16 8E-21 158.3 28.1 277 103-396 6-287 (291)
35 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-15 4E-20 164.0 26.1 345 138-509 10-388 (452)
36 3e4b_A ALGK; tetratricopeptide 99.7 2.2E-15 7.6E-20 161.9 25.4 346 172-544 9-388 (452)
37 3uq3_A Heat shock protein STI1 99.7 5.8E-15 2E-19 146.5 25.9 226 515-754 6-237 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.7 7.3E-17 2.5E-21 177.1 11.8 154 616-774 124-287 (1134)
39 2pl2_A Hypothetical conserved 99.7 2.9E-15 9.9E-20 143.5 21.5 196 548-749 4-210 (217)
40 3uq3_A Heat shock protein STI1 99.7 6.9E-15 2.4E-19 145.9 24.6 59 98-158 7-65 (258)
41 2pl2_A Hypothetical conserved 99.7 3.1E-15 1E-19 143.4 20.7 198 200-401 4-212 (217)
42 3u4t_A TPR repeat-containing p 99.7 2.6E-14 8.9E-19 143.1 26.1 246 136-384 8-265 (272)
43 2h6f_A Protein farnesyltransfe 99.7 2.8E-14 9.5E-19 147.9 26.3 248 132-385 98-364 (382)
44 2h6f_A Protein farnesyltransfe 99.7 2.6E-14 8.8E-19 148.2 26.0 248 514-770 97-364 (382)
45 3u4t_A TPR repeat-containing p 99.7 2.2E-14 7.6E-19 143.6 24.8 250 516-770 5-266 (272)
46 3spa_A Mtrpol, DNA-directed RN 99.6 2.9E-16 9.8E-21 172.5 10.8 153 581-738 124-286 (1134)
47 1ouv_A Conserved hypothetical 99.6 5.2E-13 1.8E-17 133.5 32.4 225 513-755 5-253 (273)
48 1ouv_A Conserved hypothetical 99.6 8.3E-13 2.8E-17 132.0 32.5 225 94-335 4-252 (273)
49 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.8E-16 135.6 44.8 455 285-769 47-584 (679)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.2E-14 1.1E-18 142.7 20.1 95 237-333 45-139 (275)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.1E-14 1.1E-18 142.8 19.4 197 202-403 44-244 (275)
52 2q7f_A YRRB protein; TPR, prot 99.6 7.9E-14 2.7E-18 136.8 21.6 211 549-765 23-233 (243)
53 2ho1_A Type 4 fimbrial biogene 99.6 5.4E-13 1.9E-17 131.6 27.7 202 549-754 37-239 (252)
54 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-13 1.4E-17 132.4 26.1 198 204-403 40-238 (252)
55 2q7f_A YRRB protein; TPR, prot 99.6 7E-14 2.4E-18 137.2 20.1 199 174-376 31-229 (243)
56 2vq2_A PILW, putative fimbrial 99.6 7.5E-13 2.6E-17 128.0 27.0 204 548-754 7-212 (225)
57 4e6h_A MRNA 3'-END-processing 99.6 5.3E-11 1.8E-15 131.7 43.8 455 251-734 48-584 (679)
58 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.9E-17 126.7 26.5 59 134-193 11-69 (225)
59 3sf4_A G-protein-signaling mod 99.5 1.1E-13 3.6E-18 147.8 18.5 203 94-296 7-253 (406)
60 3sf4_A G-protein-signaling mod 99.5 1E-13 3.4E-18 148.1 17.6 130 342-471 189-334 (406)
61 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-12 3.6E-17 122.2 22.4 167 583-753 4-170 (184)
62 4a1s_A PINS, partner of inscut 99.5 1.9E-13 6.6E-18 146.1 19.3 274 98-402 50-371 (411)
63 4a1s_A PINS, partner of inscut 99.5 1.5E-13 5.1E-18 147.0 17.8 276 446-753 50-372 (411)
64 3ro2_A PINS homolog, G-protein 99.5 4.3E-13 1.5E-17 138.9 19.3 274 98-402 7-331 (338)
65 2ond_A Cleavage stimulation fa 99.5 1.2E-11 4.2E-16 125.7 29.4 221 531-755 33-272 (308)
66 3ro2_A PINS homolog, G-protein 99.5 5.7E-13 1.9E-17 138.0 18.8 275 447-753 8-332 (338)
67 3vtx_A MAMA; tetratricopeptide 99.5 3.4E-12 1.2E-16 118.8 21.7 166 95-298 4-169 (184)
68 2ond_A Cleavage stimulation fa 99.5 1.6E-11 5.4E-16 124.9 28.1 218 218-438 33-270 (308)
69 3ulq_A Response regulator aspa 99.5 5.6E-12 1.9E-16 133.0 25.2 230 520-752 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.5 2E-12 6.9E-17 139.7 20.2 214 182-399 84-317 (474)
71 4abn_A Tetratricopeptide repea 99.5 1.5E-12 5.3E-17 140.6 19.1 211 217-432 84-315 (474)
72 3ulq_A Response regulator aspa 99.5 4.4E-12 1.5E-16 133.8 22.0 232 208-472 110-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.4 7.1E-13 2.4E-17 135.5 14.7 171 93-263 24-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 9.4E-13 3.2E-17 134.6 13.7 245 131-402 27-306 (311)
75 3q15_A PSP28, response regulat 99.4 8.5E-11 2.9E-15 123.6 27.0 230 519-752 106-364 (378)
76 3q15_A PSP28, response regulat 99.4 7.7E-11 2.6E-15 123.9 25.0 231 238-471 104-363 (378)
77 4i17_A Hypothetical protein; T 99.4 7.7E-11 2.6E-15 113.9 23.1 207 546-765 4-220 (228)
78 1hz4_A MALT regulatory protein 99.4 1.7E-10 5.8E-15 121.2 27.4 164 99-262 17-201 (373)
79 1hz4_A MALT regulatory protein 99.4 2.3E-10 7.7E-15 120.2 27.5 59 135-193 18-80 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-11 1E-15 135.4 20.6 165 583-752 8-173 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.3 5.2E-11 1.8E-15 133.6 20.7 163 237-402 11-173 (723)
82 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 108.3 19.8 166 585-754 9-174 (186)
83 4i17_A Hypothetical protein; T 99.3 2E-10 6.9E-15 111.0 21.9 205 165-380 6-220 (228)
84 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.7E-15 106.8 20.1 164 237-403 10-173 (186)
85 1qqe_A Vesicular transport pro 99.2 2.3E-10 7.7E-15 115.1 18.9 207 529-752 32-268 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5.3E-15 116.0 15.9 97 237-333 87-197 (283)
87 3mv2_B Coatomer subunit epsilo 99.2 5E-09 1.7E-13 102.3 24.9 178 220-403 85-282 (310)
88 3edt_B KLC 2, kinesin light ch 99.2 2E-10 6.7E-15 115.3 15.3 161 213-402 13-197 (283)
89 1qqe_A Vesicular transport pro 99.2 1.3E-09 4.5E-14 109.5 19.4 168 101-298 42-227 (292)
90 3mv2_B Coatomer subunit epsilo 99.2 9.4E-09 3.2E-13 100.3 24.4 250 103-376 20-289 (310)
91 3qky_A Outer membrane assembly 99.2 1.1E-09 3.9E-14 108.1 18.3 214 93-324 12-251 (261)
92 3urz_A Uncharacterized protein 99.1 2.3E-09 7.9E-14 101.4 18.6 133 625-763 60-194 (208)
93 3urz_A Uncharacterized protein 99.1 1.3E-09 4.4E-14 103.2 16.9 178 548-732 3-198 (208)
94 3qky_A Outer membrane assembly 99.1 1.4E-09 4.7E-14 107.5 17.6 96 203-298 17-125 (261)
95 3dra_A Protein farnesyltransfe 99.1 3.6E-08 1.2E-12 97.6 27.3 219 529-752 48-286 (306)
96 2uy1_A Cleavage stimulation fa 99.1 7.6E-08 2.6E-12 103.5 32.2 125 620-752 287-412 (493)
97 2uy1_A Cleavage stimulation fa 99.1 9.7E-08 3.3E-12 102.7 31.4 381 317-780 6-405 (493)
98 2fo7_A Synthetic consensus TPR 99.1 4.5E-09 1.5E-13 91.4 17.4 131 621-754 3-133 (136)
99 3dra_A Protein farnesyltransfe 99.1 6.2E-08 2.1E-12 95.9 26.8 217 218-437 50-286 (306)
100 4ga2_A E3 SUMO-protein ligase 99.1 4.1E-10 1.4E-14 100.0 9.3 138 629-771 7-146 (150)
101 3rjv_A Putative SEL1 repeat pr 99.1 1.5E-08 5.2E-13 96.0 20.5 177 567-755 4-199 (212)
102 2yhc_A BAMD, UPF0169 lipoprote 99.0 1E-08 3.5E-13 98.4 19.2 189 95-300 3-214 (225)
103 2pzi_A Probable serine/threoni 99.0 1.7E-09 5.9E-14 122.3 15.6 174 212-389 402-583 (681)
104 4ga2_A E3 SUMO-protein ligase 99.0 7.7E-10 2.6E-14 98.2 9.9 144 242-388 4-148 (150)
105 2pzi_A Probable serine/threoni 99.0 1.5E-09 5.2E-14 122.7 14.8 173 142-320 402-583 (681)
106 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4.2E-13 88.6 17.5 128 273-402 4-131 (136)
107 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.9E-08 6.5E-13 96.5 20.1 58 346-403 153-213 (225)
108 2r5s_A Uncharacterized protein 99.0 2.5E-09 8.5E-14 98.2 13.0 162 99-297 9-171 (176)
109 2r5s_A Uncharacterized protein 99.0 4E-09 1.4E-13 96.8 14.0 161 237-401 8-171 (176)
110 3rjv_A Putative SEL1 repeat pr 99.0 5.7E-08 2E-12 92.0 20.9 176 532-719 4-198 (212)
111 3qou_A Protein YBBN; thioredox 98.9 1E-08 3.5E-13 102.5 15.5 166 130-298 116-283 (287)
112 3qou_A Protein YBBN; thioredox 98.9 1.9E-08 6.6E-13 100.5 16.8 161 237-401 119-282 (287)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 8.7E-09 3E-13 104.3 14.0 121 211-332 46-182 (307)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 3.8E-08 1.3E-12 99.5 17.8 197 179-401 4-222 (307)
115 2vsy_A XCC0866; transferase, g 98.9 3.1E-08 1.1E-12 110.2 18.6 152 563-718 3-157 (568)
116 2vsy_A XCC0866; transferase, g 98.9 3.1E-08 1.1E-12 110.2 17.9 160 215-377 3-165 (568)
117 3q7a_A Farnesyltransferase alp 98.8 1.1E-06 3.9E-11 87.6 25.7 171 216-389 69-257 (349)
118 3q7a_A Farnesyltransferase alp 98.8 1.2E-06 4E-11 87.5 25.7 231 527-763 67-340 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.8E-07 9.7E-12 87.5 19.2 125 274-403 10-150 (213)
120 4gco_A Protein STI-1; structur 98.8 8E-08 2.7E-12 81.9 13.5 99 655-755 14-112 (126)
121 3u3w_A Transcriptional activat 98.8 6.2E-07 2.1E-11 90.0 22.2 163 590-752 81-265 (293)
122 4f3v_A ESX-1 secretion system 98.8 1.3E-07 4.5E-12 91.0 16.0 198 178-380 18-247 (282)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 1.1E-06 3.7E-11 88.2 23.4 167 586-752 77-265 (293)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.4E-07 8.3E-12 87.9 17.8 129 622-755 9-152 (213)
125 3gyz_A Chaperone protein IPGC; 98.8 1.1E-08 3.8E-13 90.0 6.9 101 651-754 33-134 (151)
126 4gco_A Protein STI-1; structur 98.7 2.3E-07 7.8E-12 79.1 14.9 107 272-380 15-121 (126)
127 4f3v_A ESX-1 secretion system 98.7 2.1E-07 7.1E-12 89.7 15.9 191 104-299 15-237 (282)
128 3dss_A Geranylgeranyl transfer 98.7 4.3E-06 1.5E-10 83.1 25.8 183 565-754 90-305 (331)
129 3u3w_A Transcriptional activat 98.7 3.4E-06 1.2E-10 84.5 25.4 163 555-717 81-265 (293)
130 2c2l_A CHIP, carboxy terminus 98.7 4E-08 1.4E-12 97.7 10.6 194 200-402 3-198 (281)
131 1a17_A Serine/threonine protei 98.7 5.2E-07 1.8E-11 81.5 16.7 129 620-751 14-144 (166)
132 2qfc_A PLCR protein; TPR, HTH, 98.7 1.9E-06 6.7E-11 86.3 22.1 168 550-717 76-265 (293)
133 3gyz_A Chaperone protein IPGC; 98.7 1.3E-07 4.3E-12 83.2 11.3 97 306-403 37-133 (151)
134 3dss_A Geranylgeranyl transfer 98.7 1.2E-05 4.2E-10 79.9 26.8 195 530-733 90-318 (331)
135 2vgx_A Chaperone SYCD; alterna 98.7 9E-08 3.1E-12 84.4 9.8 111 641-754 9-119 (148)
136 2c2l_A CHIP, carboxy terminus 98.6 1.9E-07 6.6E-12 92.7 13.1 194 548-752 3-198 (281)
137 1a17_A Serine/threonine protei 98.6 9.3E-07 3.2E-11 79.8 16.6 127 272-400 15-143 (166)
138 1na0_A Designed protein CTPR3; 98.6 1E-06 3.6E-11 74.8 15.7 114 270-385 9-122 (125)
139 3gw4_A Uncharacterized protein 98.6 2.5E-07 8.6E-12 87.0 12.8 156 596-752 4-175 (203)
140 2lni_A Stress-induced-phosphop 98.6 8.4E-07 2.9E-11 76.5 14.7 117 269-387 15-131 (133)
141 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4.2E-11 74.4 15.5 95 621-717 11-105 (125)
142 2lni_A Stress-induced-phosphop 98.6 7.9E-07 2.7E-11 76.7 14.1 116 619-738 16-132 (133)
143 1p5q_A FKBP52, FK506-binding p 98.6 8.5E-07 2.9E-11 90.6 15.9 131 618-752 146-293 (336)
144 3gw4_A Uncharacterized protein 98.6 1.1E-06 3.6E-11 82.6 15.4 84 213-297 4-93 (203)
145 4gcn_A Protein STI-1; structur 98.6 6.5E-07 2.2E-11 76.4 12.5 95 657-752 11-111 (127)
146 2vyi_A SGTA protein; chaperone 98.6 1.4E-06 4.8E-11 74.7 14.9 118 270-389 12-129 (131)
147 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4.2E-11 75.1 14.5 116 621-739 14-129 (131)
148 2e2e_A Formate-dependent nitri 98.6 3.3E-07 1.1E-11 83.9 11.0 117 633-752 24-143 (177)
149 2e2e_A Formate-dependent nitri 98.5 7.2E-07 2.5E-11 81.7 13.2 120 282-403 22-144 (177)
150 2vgx_A Chaperone SYCD; alterna 98.5 5.6E-07 1.9E-11 79.2 11.7 95 272-368 23-117 (148)
151 1p5q_A FKBP52, FK506-binding p 98.5 1.4E-06 4.7E-11 89.1 16.2 130 271-401 148-292 (336)
152 2fbn_A 70 kDa peptidylprolyl i 98.5 1.2E-07 3.9E-12 88.9 7.4 130 619-751 38-184 (198)
153 4gcn_A Protein STI-1; structur 98.5 9E-07 3.1E-11 75.5 12.3 109 619-730 8-122 (127)
154 3upv_A Heat shock protein STI1 98.5 1.2E-06 4.2E-11 74.7 13.0 98 654-753 4-101 (126)
155 3upv_A Heat shock protein STI1 98.5 3.2E-06 1.1E-10 72.0 14.1 22 276-297 10-31 (126)
156 2xcb_A PCRH, regulatory protei 98.4 8.8E-07 3E-11 77.5 10.4 99 653-753 17-115 (142)
157 2fbn_A 70 kDa peptidylprolyl i 98.4 3.2E-07 1.1E-11 85.9 7.8 122 272-394 40-176 (198)
158 1elw_A TPR1-domain of HOP; HOP 98.4 6.5E-06 2.2E-10 68.9 15.1 98 655-754 5-102 (118)
159 1elw_A TPR1-domain of HOP; HOP 98.4 8.6E-06 2.9E-10 68.1 15.5 105 272-378 6-110 (118)
160 2dba_A Smooth muscle cell asso 98.4 8.2E-06 2.8E-10 71.7 15.9 112 652-767 26-141 (148)
161 2xcb_A PCRH, regulatory protei 98.4 3.1E-06 1.1E-10 74.0 12.0 27 307-333 54-80 (142)
162 1elr_A TPR2A-domain of HOP; HO 98.4 2.7E-06 9.2E-11 72.9 11.4 95 622-717 7-107 (131)
163 3q49_B STIP1 homology and U bo 98.3 5.4E-06 1.8E-10 71.8 12.6 96 654-751 9-104 (137)
164 2kck_A TPR repeat; tetratricop 98.3 3.7E-06 1.3E-10 69.6 11.1 98 655-754 7-107 (112)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 8.4E-06 2.9E-10 73.3 14.1 98 272-371 13-110 (164)
166 2dba_A Smooth muscle cell asso 98.3 1.4E-05 4.7E-10 70.2 15.0 101 271-374 29-133 (148)
167 1hxi_A PEX5, peroxisome target 98.3 5.4E-06 1.8E-10 69.8 11.1 94 657-753 20-114 (121)
168 4b4t_Q 26S proteasome regulato 98.3 2.9E-05 9.9E-10 82.9 19.7 121 631-751 107-243 (434)
169 2kck_A TPR repeat; tetratricop 98.3 6.3E-06 2.2E-10 68.2 11.4 92 310-402 11-105 (112)
170 3q49_B STIP1 homology and U bo 98.3 1E-05 3.5E-10 70.1 13.0 61 237-298 11-71 (137)
171 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-05 4.2E-10 72.2 13.9 99 304-403 10-108 (164)
172 1dce_A Protein (RAB geranylger 98.3 3.7E-05 1.3E-09 84.0 19.9 174 598-776 43-243 (567)
173 1elr_A TPR2A-domain of HOP; HO 98.3 8E-06 2.7E-10 69.9 11.9 108 585-696 5-119 (131)
174 1hxi_A PEX5, peroxisome target 98.2 8.6E-06 2.9E-10 68.6 11.1 90 312-402 24-113 (121)
175 3ro3_A PINS homolog, G-protein 98.2 8E-06 2.7E-10 73.1 11.7 132 621-752 11-157 (164)
176 4b4t_Q 26S proteasome regulato 98.2 8.6E-05 2.9E-09 79.2 21.1 123 210-332 104-243 (434)
177 2hr2_A Hypothetical protein; a 98.2 1.4E-05 4.7E-10 69.1 11.7 62 691-752 59-130 (159)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.3E-05 4.6E-10 85.6 14.1 130 619-752 268-414 (457)
179 1dce_A Protein (RAB geranylger 98.1 4.5E-05 1.6E-09 83.3 17.4 173 564-742 44-244 (567)
180 2xev_A YBGF; tetratricopeptide 98.1 6.8E-05 2.3E-09 63.8 15.0 89 209-298 10-104 (129)
181 2xev_A YBGF; tetratricopeptide 98.1 7E-05 2.4E-09 63.8 15.0 94 239-333 6-104 (129)
182 3k9i_A BH0479 protein; putativ 98.1 4.1E-06 1.4E-10 70.2 6.8 88 667-755 3-92 (117)
183 1klx_A Cysteine rich protein B 98.1 8.2E-05 2.8E-09 64.1 15.2 112 633-755 9-128 (138)
184 3ro3_A PINS homolog, G-protein 98.1 1.3E-05 4.5E-10 71.7 10.6 132 586-717 11-157 (164)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.9E-05 9.8E-10 83.0 14.9 124 270-394 268-405 (457)
186 1ihg_A Cyclophilin 40; ppiase 98.1 2.9E-05 9.9E-10 80.1 13.8 137 621-779 225-361 (370)
187 1wao_1 Serine/threonine protei 98.1 7.3E-06 2.5E-10 88.0 9.4 120 626-748 13-134 (477)
188 3rkv_A Putative peptidylprolyl 98.1 3.5E-05 1.2E-09 68.9 12.3 65 689-754 63-127 (162)
189 2hr2_A Hypothetical protein; a 98.0 5.7E-05 1.9E-09 65.3 12.1 62 342-403 59-131 (159)
190 2if4_A ATFKBP42; FKBP-like, al 98.0 1.4E-05 4.7E-10 81.6 9.6 149 584-754 179-329 (338)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 1.5E-05 5.1E-10 81.4 9.8 95 342-437 232-327 (338)
192 1ihg_A Cyclophilin 40; ppiase 98.0 4.8E-05 1.6E-09 78.4 13.6 120 273-393 226-360 (370)
193 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.4E-10 85.4 10.2 119 278-398 14-134 (477)
194 3rkv_A Putative peptidylprolyl 98.0 6.5E-05 2.2E-09 67.1 12.8 64 340-403 63-126 (162)
195 3n71_A Histone lysine methyltr 98.0 2.7E-05 9.2E-10 82.8 11.3 125 628-752 318-463 (490)
196 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.4E-10 67.1 7.2 86 318-403 3-90 (117)
197 1klx_A Cysteine rich protein B 97.9 0.00037 1.3E-08 60.0 15.7 111 598-719 9-127 (138)
198 2l6j_A TPR repeat-containing p 97.8 2.1E-05 7.1E-10 65.0 4.9 60 657-717 7-66 (111)
199 3n71_A Histone lysine methyltr 97.7 0.00011 3.6E-09 78.2 10.9 124 594-717 319-463 (490)
200 1zu2_A Mitochondrial import re 97.7 7.4E-05 2.5E-09 64.4 7.5 83 598-682 16-119 (158)
201 1zu2_A Mitochondrial import re 97.7 6.9E-05 2.4E-09 64.6 7.2 112 630-771 13-136 (158)
202 2l6j_A TPR repeat-containing p 97.7 0.00014 4.7E-09 59.8 8.9 91 688-779 3-98 (111)
203 2kat_A Uncharacterized protein 97.6 0.00019 6.5E-09 59.6 9.0 61 654-715 19-79 (115)
204 1na3_A Designed protein CTPR2; 97.6 0.00045 1.5E-08 54.1 10.5 76 308-384 12-87 (91)
205 2kat_A Uncharacterized protein 97.6 0.00039 1.3E-08 57.6 9.9 78 254-333 4-81 (115)
206 1na3_A Designed protein CTPR2; 97.6 0.00066 2.2E-08 53.1 10.6 60 622-682 12-71 (91)
207 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.6E-08 53.2 9.0 64 339-402 6-69 (100)
208 3ly7_A Transcriptional activat 97.3 0.0044 1.5E-07 61.7 14.7 82 686-771 274-355 (372)
209 3ma5_A Tetratricopeptide repea 97.3 0.0012 4.2E-08 52.8 8.9 64 269-333 6-69 (100)
210 3ly7_A Transcriptional activat 97.2 0.0059 2E-07 60.8 14.5 74 651-728 274-347 (372)
211 3qww_A SET and MYND domain-con 97.0 0.0017 5.8E-08 67.8 8.7 85 632-716 311-409 (433)
212 3qww_A SET and MYND domain-con 96.9 0.002 7E-08 67.1 9.1 87 666-752 310-410 (433)
213 3u64_A Protein TP_0956; tetrat 96.8 0.11 3.9E-06 49.3 18.9 91 670-764 179-282 (301)
214 3u64_A Protein TP_0956; tetrat 96.8 0.12 4.1E-06 49.2 18.8 86 356-441 179-272 (301)
215 3qwp_A SET and MYND domain-con 96.8 0.0058 2E-07 63.9 11.0 88 629-716 297-398 (429)
216 3bee_A Putative YFRE protein; 96.8 0.0098 3.4E-07 46.4 9.5 68 686-755 3-74 (93)
217 3qwp_A SET and MYND domain-con 96.7 0.0057 2E-07 63.9 10.4 92 661-752 294-399 (429)
218 2kc7_A BFR218_protein; tetratr 96.7 0.004 1.4E-07 49.5 7.2 57 347-403 7-64 (99)
219 3bee_A Putative YFRE protein; 96.7 0.0099 3.4E-07 46.4 9.1 68 337-404 3-73 (93)
220 2kc7_A BFR218_protein; tetratr 96.7 0.004 1.4E-07 49.5 7.0 55 278-333 8-63 (99)
221 1pc2_A Mitochondria fission pr 96.6 0.0062 2.1E-07 51.8 7.5 80 218-298 15-99 (152)
222 1pc2_A Mitochondria fission pr 96.6 0.012 4E-07 50.1 9.1 81 671-753 15-100 (152)
223 3lvg_A Clathrin heavy chain 1; 96.5 1.3E-06 4.6E-11 87.6 -17.5 265 94-394 52-324 (624)
224 2v5f_A Prolyl 4-hydroxylase su 96.4 0.026 8.8E-07 45.3 10.1 68 94-161 3-76 (104)
225 3lvg_A Clathrin heavy chain 1; 96.3 2.7E-07 9.3E-12 92.4 -24.0 220 237-491 56-275 (624)
226 4ady_A RPN2, 26S proteasome re 95.9 3.1 0.00011 47.1 47.9 264 418-693 383-665 (963)
227 2v5f_A Prolyl 4-hydroxylase su 95.8 0.078 2.7E-06 42.4 10.1 35 341-375 47-81 (104)
228 3mkq_A Coatomer beta'-subunit; 95.6 0.33 1.1E-05 56.1 18.8 154 105-296 608-762 (814)
229 3mkq_A Coatomer beta'-subunit; 95.4 0.46 1.6E-05 54.9 19.2 150 282-469 611-761 (814)
230 3mkq_B Coatomer subunit alpha; 95.4 1.3 4.3E-05 38.7 16.7 101 349-469 14-114 (177)
231 3mkq_B Coatomer subunit alpha; 95.3 1.2 4E-05 38.9 16.2 44 247-296 17-60 (177)
232 4h7y_A Dual specificity protei 95.2 0.59 2E-05 39.1 13.1 105 268-374 11-128 (161)
233 1nzn_A CGI-135 protein, fissio 95.1 0.091 3.1E-06 42.8 8.1 82 670-753 17-103 (126)
234 4h7y_A Dual specificity protei 95.0 0.29 9.8E-06 41.0 10.9 112 651-764 10-134 (161)
235 1wy6_A Hypothetical protein ST 94.9 1.3 4.3E-05 36.2 14.5 65 410-475 92-156 (172)
236 4ady_A RPN2, 26S proteasome re 94.8 7 0.00024 44.3 50.5 312 451-774 381-721 (963)
237 1nzn_A CGI-135 protein, fissio 94.8 0.071 2.4E-06 43.5 6.8 79 219-298 19-102 (126)
238 1wy6_A Hypothetical protein ST 94.4 1.7 5.9E-05 35.4 15.7 68 688-756 90-157 (172)
239 1y8m_A FIS1; mitochondria, unk 91.8 3.4 0.00012 34.3 12.0 69 686-754 36-107 (144)
240 3o48_A Mitochondria fission 1 91.8 1.4 4.7E-05 36.1 9.6 66 233-298 37-106 (134)
241 3o48_A Mitochondria fission 1 91.8 1.6 5.6E-05 35.7 10.0 70 685-754 36-108 (134)
242 2ff4_A Probable regulatory pro 91.6 13 0.00045 37.8 19.7 56 172-228 177-232 (388)
243 1y8m_A FIS1; mitochondria, unk 91.4 3.5 0.00012 34.2 11.7 62 237-298 41-105 (144)
244 4gns_B Protein CSD3, chitin bi 90.9 2.3 8E-05 47.1 13.6 54 348-401 345-398 (754)
245 4gns_B Protein CSD3, chitin bi 90.8 0.98 3.4E-05 50.1 10.5 50 699-750 347-397 (754)
246 3lpz_A GET4 (YOR164C homolog); 90.1 15 0.00051 36.0 20.7 82 372-472 134-215 (336)
247 2wpv_A GET4, UPF0363 protein Y 89.7 16 0.00053 35.5 19.6 81 372-471 132-215 (312)
248 4b4t_P 26S proteasome regulato 89.6 21 0.00073 37.0 19.3 96 552-647 140-246 (445)
249 4fhn_B Nucleoporin NUP120; pro 88.4 11 0.00038 44.9 18.0 166 171-357 817-988 (1139)
250 3ffl_A Anaphase-promoting comp 87.9 1.2 4.2E-05 38.1 6.6 125 126-263 13-150 (167)
251 4fhn_B Nucleoporin NUP120; pro 87.4 15 0.0005 43.9 18.2 85 376-462 901-989 (1139)
252 3lpz_A GET4 (YOR164C homolog); 87.1 24 0.00081 34.6 22.3 109 206-328 40-159 (336)
253 2ff4_A Probable regulatory pro 86.1 2.5 8.7E-05 43.2 9.4 67 344-410 175-246 (388)
254 2wpv_A GET4, UPF0363 protein Y 85.9 27 0.00091 33.9 21.7 110 206-329 38-158 (312)
255 1zbp_A Hypothetical protein VP 85.8 6.2 0.00021 37.0 10.7 128 697-837 5-138 (273)
256 4b4t_P 26S proteasome regulato 85.2 38 0.0013 35.1 21.3 94 274-367 141-245 (445)
257 3ffl_A Anaphase-promoting comp 83.3 6.2 0.00021 33.8 8.8 60 237-296 22-89 (167)
258 1zbp_A Hypothetical protein VP 83.1 31 0.001 32.4 15.3 114 348-473 5-129 (273)
259 2p58_C Putative type III secre 77.3 20 0.0007 27.4 8.6 50 279-334 49-98 (116)
260 1v54_E Cytochrome C oxidase po 76.2 22 0.00074 27.4 8.6 63 599-662 25-87 (109)
261 2uwj_G Type III export protein 74.6 19 0.00066 27.4 7.8 51 279-335 48-98 (115)
262 1qsa_A Protein (soluble lytic 74.3 1E+02 0.0035 33.4 37.2 114 630-747 296-436 (618)
263 4b4t_R RPN7, 26S proteasome re 74.2 48 0.0016 34.2 14.2 97 237-333 133-236 (429)
264 4b4t_R RPN7, 26S proteasome re 73.6 22 0.00076 36.7 11.5 62 272-333 133-196 (429)
265 2p58_C Putative type III secre 72.9 21 0.00072 27.3 7.7 52 139-196 48-99 (116)
266 1qsa_A Protein (soluble lytic 72.0 1.2E+02 0.004 33.0 36.5 386 17-445 85-486 (618)
267 1v54_E Cytochrome C oxidase po 71.4 33 0.0011 26.4 9.4 47 322-368 27-73 (109)
268 3esl_A Checkpoint serine/threo 71.1 26 0.00088 31.2 9.4 57 702-758 92-149 (202)
269 3esl_A Checkpoint serine/threo 67.3 28 0.00095 31.0 8.8 56 667-722 92-148 (202)
270 2y69_E Cytochrome C oxidase su 66.8 39 0.0013 27.6 8.6 62 600-662 69-130 (152)
271 2uwj_G Type III export protein 64.4 33 0.0011 26.2 7.3 78 669-754 21-98 (115)
272 2y69_E Cytochrome C oxidase su 62.6 63 0.0022 26.5 9.4 47 323-369 71-117 (152)
273 4a1g_A Mitotic checkpoint seri 61.4 53 0.0018 27.7 9.0 53 706-758 82-135 (152)
274 3txn_A 26S proteasome regulato 58.6 1.6E+02 0.0054 29.7 29.1 93 275-367 104-208 (394)
275 3txn_A 26S proteasome regulato 57.9 1.6E+02 0.0055 29.7 28.1 137 41-193 20-166 (394)
276 2wvi_A Mitotic checkpoint seri 56.6 69 0.0024 27.4 9.1 54 706-759 77-131 (164)
277 3ltm_A Alpha-REP4; protein eng 47.7 1.5E+02 0.0052 26.3 19.5 16 269-284 63-78 (211)
278 4b4t_S RPN3, 26S proteasome re 45.9 1.1E+02 0.0039 31.9 10.5 63 132-194 232-298 (523)
279 3eiq_C Programmed cell death p 42.1 2.7E+02 0.0091 27.6 12.6 25 169-193 57-81 (358)
280 3mv2_A Coatomer subunit alpha; 40.5 2.6E+02 0.0089 27.0 11.9 31 237-267 209-239 (325)
281 2nsz_A Programmed cell death p 39.9 1.3E+02 0.0043 24.5 8.0 22 345-366 12-33 (129)
282 3bge_A Predicted ATPase; struc 39.4 1.7E+02 0.0058 25.8 8.9 37 596-632 19-55 (201)
283 3eiq_C Programmed cell death p 38.6 2.5E+02 0.0086 27.7 11.3 63 553-616 221-285 (358)
284 4aez_C MAD3, mitotic spindle c 37.0 58 0.002 29.5 5.8 53 706-758 131-184 (223)
285 4b4t_S RPN3, 26S proteasome re 36.0 3.8E+02 0.013 28.1 12.5 63 202-264 232-299 (523)
286 3ltm_A Alpha-REP4; protein eng 35.3 2.3E+02 0.008 25.0 19.4 17 269-285 125-141 (211)
287 2r9g_A AAA ATPase, central reg 34.6 2.4E+02 0.0083 24.9 9.6 34 597-631 27-60 (204)
288 2fe3_A Peroxide operon regulat 34.2 1.2E+02 0.0041 25.2 7.3 55 230-284 16-70 (145)
289 3pvs_A Replication-associated 32.9 4.2E+02 0.014 27.2 15.1 36 633-668 269-304 (447)
290 2ion_A PDCD4, programmed cell 32.7 1.1E+02 0.0037 25.8 6.7 23 344-366 13-35 (152)
291 1mzb_A Ferric uptake regulatio 30.9 1.2E+02 0.0042 24.8 6.7 53 230-282 12-65 (136)
292 1wdy_A 2-5A-dependent ribonucl 29.6 1.1E+02 0.0037 28.7 7.3 12 499-510 199-210 (285)
293 4aez_C MAD3, mitotic spindle c 29.4 1.7E+02 0.0056 26.6 7.5 50 358-407 132-183 (223)
294 2d2s_A Exocyst complex compone 29.0 2.7E+02 0.0092 25.5 9.2 22 626-647 25-46 (235)
295 2r9g_A AAA ATPase, central reg 28.6 3.1E+02 0.011 24.3 10.1 33 423-456 28-60 (204)
296 3eyy_A Putative iron uptake re 28.5 1.2E+02 0.0039 25.4 6.2 54 230-284 13-66 (145)
297 2ijq_A Hypothetical protein; s 28.2 1.9E+02 0.0064 24.6 7.2 54 699-752 42-103 (161)
298 3mv2_A Coatomer subunit alpha; 28.0 4.2E+02 0.014 25.6 11.9 27 692-718 210-236 (325)
299 3ctd_A Putative ATPase, AAA fa 27.7 3.1E+02 0.011 24.5 8.7 35 597-631 48-82 (213)
300 2xig_A Ferric uptake regulatio 27.1 1.4E+02 0.0049 25.0 6.6 47 274-320 30-76 (150)
301 3kea_A K1L; tropism, ANK repea 26.6 1.6E+02 0.0054 27.9 7.7 18 451-468 165-182 (285)
302 2w57_A Ferric uptake regulatio 26.4 1.4E+02 0.0047 25.1 6.3 33 252-284 34-66 (150)
303 4gq2_M Nucleoporin NUP120; bet 25.8 6.7E+02 0.023 28.9 13.9 130 102-249 816-950 (950)
304 2d2s_A Exocyst complex compone 25.7 3.6E+02 0.012 24.7 9.4 23 590-612 24-46 (235)
305 1wdy_A 2-5A-dependent ribonucl 25.2 1.1E+02 0.0037 28.7 6.4 9 454-462 226-234 (285)
306 1oyz_A Hypothetical protein YI 24.7 4.3E+02 0.015 24.6 21.7 18 268-285 140-157 (280)
307 1k1a_A B-cell lymphoma 3-encod 24.5 3.3E+02 0.011 24.4 9.5 18 281-298 17-34 (241)
308 3kea_A K1L; tropism, ANK repea 24.5 2.1E+02 0.0073 27.0 8.3 21 414-434 163-183 (285)
309 2crb_A Nuclear receptor bindin 24.4 1.1E+02 0.0036 23.0 4.2 26 97-122 16-41 (97)
310 2ijq_A Hypothetical protein; s 23.4 2.7E+02 0.0092 23.7 7.3 55 140-194 41-103 (161)
311 1bpo_A Protein (clathrin); cla 22.7 6.3E+02 0.022 25.9 10.9 135 257-400 348-482 (494)
312 1k1a_A B-cell lymphoma 3-encod 22.6 2.7E+02 0.0092 25.0 8.4 19 212-230 17-35 (241)
313 3bge_A Predicted ATPase; struc 22.4 4E+02 0.014 23.5 9.6 29 423-451 21-49 (201)
314 3i5p_A Nucleoporin NUP170; hel 21.9 7.1E+02 0.024 26.1 12.2 32 443-474 216-247 (525)
315 4gq2_M Nucleoporin NUP120; bet 21.9 5.9E+02 0.02 29.3 12.5 111 625-753 816-926 (950)
316 2ion_A PDCD4, programmed cell 20.9 3.7E+02 0.013 22.5 8.0 21 590-610 15-35 (152)
317 4ets_A Ferric uptake regulatio 20.8 1.6E+02 0.0055 25.1 5.7 33 231-263 28-60 (162)
318 2fu4_A Ferric uptake regulatio 20.4 2.5E+02 0.0084 20.2 6.2 8 289-296 36-43 (83)
319 3kae_A CDC27, possible protein 20.4 4.1E+02 0.014 22.8 11.3 86 239-330 37-139 (242)
320 3ltj_A Alpharep-4; protein eng 20.1 4.3E+02 0.015 22.9 19.4 185 187-390 14-199 (201)
321 2zu6_B Programmed cell death p 20.1 2.8E+02 0.0095 26.7 7.7 221 413-636 7-254 (307)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-42 Score=386.75 Aligned_cols=489 Identities=11% Similarity=0.026 Sum_probs=378.0
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 043440 268 MNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLL 347 (850)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 347 (850)
+++..|+.++..|.+.|++++|+.+|+++.+ ..|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 3555566666666666666666666666654 3345555556666666666666666666655432 34555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC----------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSG----------------IANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVS 411 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 411 (850)
.+|.+.|++++|+++|+++.... +.+..+|+.++.+|.+.|++++|+++|++|.+.++. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 66666666666666665422211 135778888888888888888888888888876432 3445
Q ss_pred HHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043440 412 YNNMILAHCTVKNMDEAY--SV-FSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIING 488 (850)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 488 (850)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 555554443332222211 11 444444444445566777788888999999999999988765 5788899999999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043440 489 LCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLA 568 (850)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 568 (850)
|.+.|++++|.++|+++.+.++. +..++..++.+|.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999887543 67788999999999999999999999998764 67888999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 569 LKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND 648 (850)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (850)
.++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+.++ .+..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 393 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987643 3688999999999999999999999999998754 47889999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043440 649 GIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK----GIEPD--IITYTVLINGLYGKGQLENARKIFDEMNRKCLTP 722 (850)
Q Consensus 649 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 722 (850)
. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 5 668899999999999999999999999999875 56787 7899999999999999999999999998864 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 043440 723 NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKS 770 (850)
Q Consensus 723 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 770 (850)
+..+|..++.+|.+.|++++|.+.|+++++..+. +...+..+...|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 8899999999999999999999999999987654 6777777776654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-40 Score=378.00 Aligned_cols=522 Identities=11% Similarity=-0.020 Sum_probs=411.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHH
Q 043440 176 CLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEA 254 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 254 (850)
..+.|.+..+...+..+. .++...|+.++..+.+.|++++|+.+|+++... .|+. ++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 345566666666655433 347788888888888889999999998888863 3455 778888888888888888
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043440 255 FRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHM 334 (850)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (850)
..+|+++... +++..+++.++.+|.+.|++++|+++|+++.. .+.. ..++.+.++ ...
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-----~~~~~~~~~-----------~~~ 194 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP----FRKD-----EKNANKLLM-----------QDG 194 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT----TC---------------C-----------CCS
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC----cccc-----ccccccccc-----------ccc
Confidence 8888887542 56788888888888888888888888885321 1100 011111111 123
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHH---HHHHHhCCCCCChhh
Q 043440 335 GIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNL---WQKMVSSGVRPSVVS 411 (850)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~ 411 (850)
+.+++..+++.++.+|.+.|++++|+++|+++.+.+|.+..++..++..+...+..+.+... +..+...+..+...+
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 44567788888889999999999999999999888887788888777766554443332221 455555444445566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 043440 412 YNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCK 491 (850)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 491 (850)
|+.++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|+++|+++.+.+ +.+..+++.++.++.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 777788889999999999999998875 5789999999999999999999999999998765 4577889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043440 492 AGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKM 571 (850)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 571 (850)
.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998763 3478899999999999999999999999998864 66788999999999999999999999
Q ss_pred HHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 043440 572 RNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND--- 648 (850)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 648 (850)
|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 430 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 999998743 47889999999999999999999999999987543 7899999999999999999999999999876
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CH
Q 043440 649 -GIPCD--LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NV 724 (850)
Q Consensus 649 -~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 724 (850)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+. .| +.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 55666 7899999999999999999999999999864 457889999999999999999999999999985 35 67
Q ss_pred HHHHHHHHHHH
Q 043440 725 FIFNTLIAGYF 735 (850)
Q Consensus 725 ~~~~~l~~~~~ 735 (850)
.+|..+..+|.
T Consensus 585 ~~~~~l~~~~~ 595 (597)
T 2xpi_A 585 MASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 77888877664
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=2.6e-28 Score=259.80 Aligned_cols=244 Identities=19% Similarity=0.173 Sum_probs=109.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 043440 520 IIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRD 599 (850)
Q Consensus 520 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 599 (850)
+...+...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|+..|+++++.++. +...+..+...+...|+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443332 223344444444444444444444444444443211 33344444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 600 MESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSE 679 (850)
Q Consensus 600 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 679 (850)
+++|...|.+.....+. +..++..++.+|.+.|++++|++.|+++++.+ |.+..+|..++..+.+.|++++|.+.+++
T Consensus 219 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444443211 34444444444555555555555555554443 33344444555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043440 680 MLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDD 759 (850)
Q Consensus 680 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 759 (850)
+++. .+.+..++..++..+.+.|++++|.+.++++.+.. +.+..+|..++.+|.+.|++++|+..|+++++..+. +.
T Consensus 297 al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~ 373 (388)
T 1w3b_A 297 ALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FA 373 (388)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CH
T ss_pred HHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH
Confidence 5443 13344445555555555555555555555554421 123444555555555555555555555555443222 33
Q ss_pred HHHHHHHhhhh
Q 043440 760 TTYDILVNGKS 770 (850)
Q Consensus 760 ~~~~~l~~~~~ 770 (850)
..|..+...+.
T Consensus 374 ~a~~~lg~~~~ 384 (388)
T 1w3b_A 374 DAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHHHH
Confidence 34444444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=3e-28 Score=259.40 Aligned_cols=382 Identities=15% Similarity=0.085 Sum_probs=273.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043440 102 LLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDT 181 (850)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (850)
++..+.+.|++++|+..+.++.+..+. +...+..++..+...|++++|..+++...... +.+..+|..++..+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 456677888888888888887776554 45566677777888888888888888777654 3367778888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 182 TEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEM 261 (850)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 261 (850)
+++|...|+++.+..+. +..+|..++.++.+.|++++|...|+++++..+....++..++..+...|++++|...|+++
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888765432 56677788888888888888888888887765444447777888888888888888888887
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 043440 262 MSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVF 341 (850)
Q Consensus 262 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 341 (850)
++.. +.+..+|+.++..+.+.|++++|+..|+++.+.+ +.+...|..+...+...|++++|...|++..... +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 7653 2356777788888888888888888888877753 2345667777777777888888888877777653 23466
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCT 421 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 421 (850)
++..+...+.+.|++++|+..|+++++..|.+..+|..++..+.+.|++++|+..|+++.+.. +.+..++..+...+.+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777653 2355667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 043440 422 VKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKA 492 (850)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 492 (850)
.|++++|...++++++. .+.+..++..++..|.+.|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 318 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp TTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 77777777777777664 23355666777777777777777777777766543 23344555555444433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.7e-28 Score=262.37 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=110.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 043440 586 AYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGN---------MEAALDMHRKMINDGIPCDLQT 656 (850)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~ 656 (850)
.++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455555555555555555555555555555555555555555554332 4556666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043440 657 YTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFK 736 (850)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 736 (850)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhc
Q 043440 737 EGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSR 771 (850)
Q Consensus 737 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 771 (850)
.|++++|.+++++|.+.|..|+..||..++..+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666665555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-27 Score=256.69 Aligned_cols=211 Identities=15% Similarity=0.211 Sum_probs=129.8
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043440 500 DKLKKMVEKGFIPKC-LTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNE 578 (850)
Q Consensus 500 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 578 (850)
.+.+++.+++..+.+ ..++.+|++|++.|++++|.++|++|.+.|++||..+|++||.+|++.+...++
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------
Confidence 333444444433322 234555566666666666666666666666666666666666555544431100
Q ss_pred CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043440 579 GLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYT 658 (850)
Q Consensus 579 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 658 (850)
.+.+.+++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1122356677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043440 659 TLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFK 736 (850)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 736 (850)
+||.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777766654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-24 Score=241.75 Aligned_cols=233 Identities=12% Similarity=0.016 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 043440 516 TYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFC 595 (850)
Q Consensus 516 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 595 (850)
++..+...+...|++++|...|+++.+.. |+...+..++..+...|++++|...++++.+... .+..++..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 44444455555555555555555555443 1144455555555555555555555555554322 23445555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043440 596 RRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASN 675 (850)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 675 (850)
..|++++|...++++.+..+. +..++..++..|...|++++|+..|+++.+.. +.+..++..++..+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555555555554322 34455555555666666666666666655543 3344555566666666666666666
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043440 676 LYSEMLSKGI-EPD----IITYTVLINGLYG---KGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLH 747 (850)
Q Consensus 676 ~~~~~~~~g~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (850)
.++++++... .++ ...+..+..++.. .|++++|...|+++.+.. +.+..+|..++.+|...|++++|...|
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666554210 011 2255666666666 666666666666666532 124556666666666666666666666
Q ss_pred HHHHHCC
Q 043440 748 NEMLDKG 754 (850)
Q Consensus 748 ~~~~~~g 754 (850)
+++++..
T Consensus 473 ~~a~~~~ 479 (514)
T 2gw1_A 473 EESADLA 479 (514)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 6666543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.9e-25 Score=243.42 Aligned_cols=440 Identities=11% Similarity=-0.010 Sum_probs=311.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 043440 269 NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLC 348 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 348 (850)
....+...+..+.+.|++++|+..|+++.+. .|+..+|..++.++.+.|++++|+..++++++.+ +.+..++..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 3456777777888888888888888888774 3577778888888888888888888888877764 335667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043440 349 GFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEA 428 (850)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 428 (850)
++.+.|++++|+..|+++.+.++.+......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 88888888888888888887777555555555555555444444444444444333333333222211111111111112
Q ss_pred HHHHHHHHhCCCC---------CCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCChhhHH
Q 043440 429 YSVFSEMLEKRVT---------PNVVTYSVLIDGYFK---QGDAERAFDVLDQMEN-----AKI--------SPTDYTSN 483 (850)
Q Consensus 429 ~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~ 483 (850)
..+...+...... .+...+......+.. .|++++|+..|+++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2222222111111 114445555555554 8899999999999887 311 22345677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 043440 484 IIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKN 563 (850)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 563 (850)
.+...+...|++++|...++++++.... ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 7888889999999999999999887544 7788888899999999999999999998875 567778888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 564 EIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHR 643 (850)
Q Consensus 564 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 643 (850)
++++|...++++.+.... +..++..+...|...|++++|...++++.+.... +..++..++..|...|++++|+..|+
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999886443 6778888889999999999999999998876433 67788888999999999999999999
Q ss_pred HHHHCCCCCC------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043440 644 KMINDGIPCD------LQTYTTLIAGLLE---EGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDE 714 (850)
Q Consensus 644 ~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 714 (850)
++.+.. +.+ ..++..++..+.. .|++++|...++++++.. +.+..++..+..++.+.|++++|.+.|++
T Consensus 397 ~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 397 LAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 988752 222 3488888999999 999999999999998852 44677888899999999999999999999
Q ss_pred HHhC
Q 043440 715 MNRK 718 (850)
Q Consensus 715 ~~~~ 718 (850)
+.+.
T Consensus 475 a~~~ 478 (514)
T 2gw1_A 475 SADL 478 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9884
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.4e-23 Score=232.33 Aligned_cols=436 Identities=12% Similarity=0.037 Sum_probs=253.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHh
Q 043440 307 TFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCK 386 (850)
Q Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (850)
.+..+...+.+.|++++|+..|+++++.. +.+..++..+..+|.+.|++++|++.|+++++..|.+..++..++..+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34444444555555555555555554432 22344455555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHH
Q 043440 387 RGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRV--TPNVVTYSVLIDGYFKQGDAERAF 464 (850)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 464 (850)
.|++++|+..|+ .... .|+.. ...+..+...+....|...++.++.... .+........+..+....+.+.+.
T Consensus 106 ~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 555555555554 2221 11111 1112222333334455555555543210 000001112223333444444443
Q ss_pred HHHHHHHhCCCCCChh-hHHHHHHHH--------HHcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhcCCC
Q 043440 465 DVLDQMENAKISPTDY-TSNIIINGL--------CKAGRTSVAWDKLKKMVEKGFIPK------CLTYNSIIDGFVKEDD 529 (850)
Q Consensus 465 ~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 529 (850)
..+...... .+... ....+...+ ...|++++|...++++++..+... ..++..+...+...|+
T Consensus 181 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 333222111 11111 111111111 112456677777777666432210 2245555666777778
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 043440 530 MISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAE 609 (850)
Q Consensus 530 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 609 (850)
+++|...|+++.+. .|+...+..+...+...|++++|...++++.+... .+..++..+...|...|++++|...|++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 88888888877776 34467777777777778888888888888776543 3567777788888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 043440 610 LLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKG----- 684 (850)
Q Consensus 610 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----- 684 (850)
+.+..+. +...+..++..|...|++++|+..|+++.+.. +.+..++..++..+...|++++|...++++++..
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8776433 56677778888888888888888888888764 5567788888888888888888888888877631
Q ss_pred CCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 685 IEPDIITYTVLINGLYGK----------GQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 685 ~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
.......+..+..++... |++++|...|+++.+.. +.+..+|..++.+|...|++++|.+.|+++++..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111122344555667777 88999999999888753 2367888889999999999999999999988755
Q ss_pred CC
Q 043440 755 LV 756 (850)
Q Consensus 755 ~~ 756 (850)
+.
T Consensus 493 ~~ 494 (537)
T 3fp2_A 493 RT 494 (537)
T ss_dssp --
T ss_pred CC
Confidence 43
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.2e-22 Score=220.95 Aligned_cols=385 Identities=14% Similarity=0.073 Sum_probs=172.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043440 339 SVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILA 418 (850)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (850)
+...+..++..+.+.|++++|+.+|+++++..|.+..+|..++..+...|++++|+..|+++.+.++. +...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555544221 33444445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh
Q 043440 419 HCTVKNMDEAYSVFSEMLEKRVTPNV---VTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRT 495 (850)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 495 (850)
+.+.|++++|.+.|+++.+... .+. ..+..++..+... .+..+...+...|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 5555555555555555544311 122 3333332221000 011112234445555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043440 496 SVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEM 575 (850)
Q Consensus 496 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 575 (850)
++|...|+++++..+ .+..++..++.+|.+.|++++|...|+++.+.. +.+..++..++..|...|++++|+..++++
T Consensus 160 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555554321 234444555555555555555555555554432 334445555555555555555555555555
Q ss_pred HHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 043440 576 MNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCD-- 653 (850)
Q Consensus 576 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 653 (850)
.+.... +...+..+... . ....+..++..+.+.|++++|+..|+++++.. +.+
T Consensus 238 ~~~~p~-~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~ 292 (450)
T 2y4t_A 238 LKLDQD-HKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAE 292 (450)
T ss_dssp HHHCTT-CHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHH
T ss_pred HHhCCC-hHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchH
Confidence 443211 22222222000 0 00001112444445555555555555554432 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043440 654 --LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTL 730 (850)
Q Consensus 654 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 730 (850)
..++..++.++.+.|++++|+..++++++.. +.+..+|..++.+|...|++++|...|+++++. .| +..++..+
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 369 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 2244445555555555555555555554421 223445555555555555555555555555542 22 33444444
Q ss_pred H------------HHHHhcC-----CHHHHHHHHHH-HHHCCCC--CCH-------HHHHHHHhhhhcCCchHHh
Q 043440 731 I------------AGYFKEG-----NLQEAFRLHNE-MLDKGLV--PDD-------TTYDILVNGKSRSDTWARK 778 (850)
Q Consensus 731 ~------------~~~~~~g-----~~~~A~~~~~~-~~~~g~~--p~~-------~~~~~l~~~~~~~g~~~~a 778 (850)
. ..|...| +.+++.+.|++ .++..+. |+. ..+..+..+|...|+.+.+
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4 2233333 45556666665 3332211 221 2455566666666655443
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.93 E-value=2.1e-18 Score=195.01 Aligned_cols=731 Identities=13% Similarity=0.125 Sum_probs=436.1
Q ss_pred CChhHHHHHHhcCCCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHH
Q 043440 4 LSQTSVISSLLSCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHL 83 (850)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~ 83 (850)
++...++..++ +.+|+.|.+|-..+....+ |.. .....+.++...+. .+++-++|..+++.+.+ ....+=..+
T Consensus 512 pDy~~ll~~~~--~~~P~~~~~fa~~L~~~~~--p~~-d~~~ivd~f~~~~~-iq~~t~fLld~lk~n~~-e~~~LQTrl 584 (1630)
T 1xi4_A 512 PDWIFLLRNVM--RISPDQGQQFAQMLVQDEE--PLA-DITQIVDVFMEYNL-IQQCTAFLLDALKNNRP-SEGPLQTRL 584 (1630)
T ss_pred ccHHHHHHHHh--hcChHHHHHHHHHHhcCCC--Ccc-CHHHHHHHHHhcCc-HHHHHHHHHHHHhCCCh-hhhhHhHHH
Confidence 34455666665 5579999999887765543 333 35667778888885 89999999888876422 111111111
Q ss_pred HH-----------HhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043440 84 IE-----------TAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIE--RDIIPLLRSMNSVLKALVRRNLIDEA 150 (850)
Q Consensus 84 ~~-----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A 150 (850)
++ ..-..+. .+..-...++..|.+.|-++.|++.|..... +-+......-.-.+..|+..=..+.+
T Consensus 585 le~Nl~~~pqvadail~~~~-fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s 663 (1630)
T 1xi4_A 585 LEMNLMHAPQVADAILGNQM-FTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDS 663 (1630)
T ss_pred HHHhhccchhHHHHHHhcCc-cccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHHH
Confidence 11 1111111 2444567788999999999999999864321 11110000011234455555677888
Q ss_pred HHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCh
Q 043440 151 KEFYNKMNLKGLGVDSVTI-------------RVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNL 217 (850)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 217 (850)
++.+++|...+++-|.... ..++..+-+.+.++.-.-++..... ...|+.+....|.++++.|++
T Consensus 664 ~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~ 741 (1630)
T 1xi4_A 664 LECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQI 741 (1630)
T ss_pred HHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCc
Confidence 8888888864333222221 2233333333333222222222221 233555556666666666665
Q ss_pred hHHHHHHHHH-----------H-HC-----------------------------------------CC------------
Q 043440 218 KVACGLVKEM-----------R-DM-----------------------------------------GR------------ 232 (850)
Q Consensus 218 ~~A~~~~~~~-----------~-~~-----------------------------------------~~------------ 232 (850)
.+..++.++- . +. +|
T Consensus 742 ~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld 821 (1630)
T 1xi4_A 742 KEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLD 821 (1630)
T ss_pred hhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhc
Confidence 5554444320 0 00 00
Q ss_pred -CCCh--h------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHH-HH-----
Q 043440 233 -VPSR--V------------YTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSA-LE----- 291 (850)
Q Consensus 233 -~~~~--~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~----- 291 (850)
.-+. + ...|+...-+.+++.--..+++.-+..|. .++.++|+|+..|...++-.+. +.
T Consensus 822 ~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~fL~~n~~y 900 (1630)
T 1xi4_A 822 VDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPERFLRENPYY 900 (1630)
T ss_pred CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHHHhhccCcc
Confidence 0001 1 11122222223333334444555556664 4888899999888865543332 10
Q ss_pred ---HHHHHHHcCCCCCH---------------------HHHHHHHHHHHhcCChhHH-----------HHHHHHHHHCCC
Q 043440 292 ---LLDKIKEDGLSPNK---------------------VTFAVLIEGCCTNGKVEKG-----------YELYTQMKHMGI 336 (850)
Q Consensus 292 ---~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~g~~~~A-----------~~~~~~~~~~~~ 336 (850)
+.-+..+. ..|.. ..|....+-+.+..+.+-= +++.+......+
T Consensus 901 d~~~vgkyce~-rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL 979 (1630)
T 1xi4_A 901 DSRVVGKYCEK-RDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTAL 979 (1630)
T ss_pred cHHHHHHHHHh-cCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhc
Confidence 11111111 12211 1122222222222221110 112222111111
Q ss_pred --CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 043440 337 --KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI---ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVS 411 (850)
Q Consensus 337 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 411 (850)
..++.-....+..|...|...+|+++++++.-.+. .+...-+.++.+..+. +..+..++..+.-.. +
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d--- 1051 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D--- 1051 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---
Confidence 11222334456677778888888888888774432 3445555566666665 445555555544321 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 043440 412 YNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCK 491 (850)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 491 (850)
...+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++. .++.+|..+..++..
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 33466677788889999998888531 222223332 2678888888888765 246788889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043440 492 AGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKM 571 (850)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 571 (850)
.|++++|++.|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.+++++....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999998664 367788888999999999999999998877764 3333334588888888888754433
Q ss_pred HHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 572 RNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIP 651 (850)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (850)
++ .++...|..+...|...|++++|..+|..+ ..|..++..|.+.|++++|++.+++.
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 22 245566777888899999999999999885 36888899999999999999998876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043440 652 CDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLI 731 (850)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 731 (850)
.+..+|..+..+|...|++..|....... ..+...+..++..|.+.|.+++|+.+++..+... .-....|+-|.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 35688888888888889888888766542 3455667789999999999999999999988643 22556677777
Q ss_pred HHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHhhhhcCCchHHhhccc----hhhhhhhhhhHHhhcCC
Q 043440 732 AGYFK--EGNLQEAFRLHNEMLDKGLVP------DDTTYDILVNGKSRSDTWARKKEKM----PACRKHHSMRIELLELP 799 (850)
Q Consensus 732 ~~~~~--~g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~p 799 (850)
.+|.+ -++..+++++|..-.. +.| +...|.-++-.|.+.|+|+.|...+ +.+-....+........
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~ 1399 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 1399 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc
Confidence 76665 4677788888776543 322 4566888999999999999887422 22223333333333444
Q ss_pred chhhhHH
Q 043440 800 RMSNYRK 806 (850)
Q Consensus 800 ~~~~y~~ 806 (850)
+.+-|+.
T Consensus 1400 n~elyyk 1406 (1630)
T 1xi4_A 1400 NVELYYR 1406 (1630)
T ss_pred cHHHHHH
Confidence 5555553
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.7e-22 Score=219.81 Aligned_cols=301 Identities=15% Similarity=0.086 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 043440 166 SVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGAC 245 (850)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (850)
...+..++..+.+.|++++|...|+.+.+..+ .+..++..++.++...|++++|+..|+++++.++....++..++.+|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34444444555555555555555555444322 24445555555555555555555555555554322222555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcH---HHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043440 246 VKHGNLTEAFRLKDEMMSCGKPMNL---VVATSL------------MKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAV 310 (850)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 310 (850)
.+.|++++|...|+++++..+. +. ..+..+ ...+.+.|++++|+..|+++.+.. +.+...+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 5555555555555555543211 22 333333 333556666666666666665542 234555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHH----------
Q 043440 311 LIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDL---------- 380 (850)
Q Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l---------- 380 (850)
++.+|.+.|++++|+..|+++.+.. +.+..++..++..|...|++++|+..|++++...|.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665542 23455666666666666666666666666666655555555444
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043440 381 --LAWLCKRGKVSEACNLWQKMVSSGVRPS-----VVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDG 453 (850)
Q Consensus 381 --~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (850)
+..+...|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|...++++++.. +.+..+|..+...
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 666666677777777777666542 22 2355566666666677777777766666542 2355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 043440 454 YFKQGDAERAFDVLDQMENA 473 (850)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~~ 473 (850)
|...|++++|...++++.+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66777777777777666654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1e-22 Score=227.29 Aligned_cols=433 Identities=12% Similarity=0.014 Sum_probs=302.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 96 SGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA 175 (850)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (850)
...+..++..|.+.|++++|+..|++++..++. +..++..++.+|.+.|++++|+..|+++.+.++. +..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 456788999999999999999999999988765 6788999999999999999999999999887543 77889999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhcCCHH
Q 043440 176 CLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR---VYTNLIGACVKHGNLT 252 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 252 (850)
+...|++++|...|+ .....+.+. ...+..+...+....|...++++....+.... .....+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 433322211 22233444556678899999998775322111 3344455566677777
Q ss_pred HHHHHHHHHHhCCCCCc-HHHHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHH
Q 043440 253 EAFRLKDEMMSCGKPMN-LVVATSLMKGYYK--------QGDLSSALELLDKIKEDGLSPN-------KVTFAVLIEGCC 316 (850)
Q Consensus 253 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~ 316 (850)
.+...+...... .+. ......+...+.. .|++++|..+|+++.+..+. + ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 666555443332 222 1233333333222 24788899999988874322 2 234666777888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043440 317 TNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNL 396 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (850)
..|++++|...|+.+.+.. |+..++..+...+...|++++|+..|+++++..|.+..++..++..+...|++++|+..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8899999999999888863 55777888888888889999999999999888888888888899999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 397 WQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKIS 476 (850)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 476 (850)
|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+....
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9888876433 45677788888888888888888888888763 335667788888888888888888888887654210
Q ss_pred -----CChhhHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 043440 477 -----PTDYTSNIIINGLCKA----------GRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMH 541 (850)
Q Consensus 477 -----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 541 (850)
.....+..+...+... |++++|...|+++++..+ .+..++..+...|...|++++|...|++..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111233334455555 666666666666666432 244556666666666666666666666666
Q ss_pred Hc
Q 043440 542 ES 543 (850)
Q Consensus 542 ~~ 543 (850)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=8.5e-18 Score=190.19 Aligned_cols=636 Identities=14% Similarity=0.142 Sum_probs=390.3
Q ss_pred hhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCHHH------HHHHHHH
Q 043440 32 RRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGV------FSYLLRS 105 (850)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~ 105 (850)
....++.++++...++.+.++.|+ +.+.. ++.+.++-..|+.+ ..++..++-.+..|-..+ ...|+..
T Consensus 717 siv~~s~d~~vhfkyi~aa~~~~q-~~eve----ri~res~~y~~e~v-k~flk~~kl~d~~pli~vCdr~~~v~~l~~y 790 (1630)
T 1xi4_A 717 SIVNFSQDPDVHFKYIQAACKTGQ-IKEVE----RICRESNCYDPERV-KNFLKEAKLTDQLPLIIVCDRFDFVHDLVLY 790 (1630)
T ss_pred hhccccCChHHHHHHHHHHHHhCC-chhhh----HHhccCCCCCHHHH-HHHHhhCCCCCCCCceeeccccccHHHHHHH
Confidence 334467789999999999999996 77765 44555444555543 333333332222222221 2233333
Q ss_pred HHhcCChhHHHHHH-------------HHHhhCCCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043440 106 YVRADRINDAVDCC-------------NGMIERDIIPLLRS-----------MNSVLKALVRRNLIDEAKEFYNKMNLKG 161 (850)
Q Consensus 106 ~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 161 (850)
+.+++.. .-+++| ...+..++..+..- ..-|+...-+.+++.--+.+++.-...|
T Consensus 791 Ly~n~~~-~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g 869 (1630)
T 1xi4_A 791 LYRNNLQ-KYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG 869 (1630)
T ss_pred HHhcCch-hHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333333 223333 22222222211100 1122222333344444445555555555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH------HHHCCCCCC
Q 043440 162 LGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKE------MRDMGRVPS 235 (850)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~ 235 (850)
.. +..++|+|+..|...++-.+.. + .. |..-=..++.-||...|+-.|.-.|++ +++ +...
T Consensus 870 ~~-~~~~hnalakiyid~n~npe~f--L----~~----n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~--vt~~ 936 (1630)
T 1xi4_A 870 CE-EPATHNALAKIYIDSNNNPERF--L----RE----NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELIN--VCNE 936 (1630)
T ss_pred CC-CHHHHHHHHHHHhccCCCHHHH--h----hc----cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHH--HHhc
Confidence 33 6667777776665443322211 0 00 111112233444444455554444432 000 1111
Q ss_pred h-hHHHHHHHHHhcCCHHHHH-----------HHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043440 236 R-VYTNLIGACVKHGNLTEAF-----------RLKDEMMSCG--KPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGL 301 (850)
Q Consensus 236 ~-~~~~l~~~~~~~g~~~~A~-----------~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 301 (850)
. .|..+++-+.+..+.+-=- ++.+...... -..++.--...++.|...|.+.+|++++++..-.+.
T Consensus 937 n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s 1016 (1630)
T 1xi4_A 937 NSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS 1016 (1630)
T ss_pred chhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 1 3444444444444332111 1222221111 112333445677888899999999999999874311
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHH
Q 043440 302 --SPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYND 379 (850)
Q Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (850)
.-+...-+.++....+. +..+..++....... ....+...+...|.+++|..+|++... ...+.+.
T Consensus 1017 ~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~~----~~~A~~V 1084 (1630)
T 1xi4_A 1017 VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFDV----NTSAVQV 1084 (1630)
T ss_pred cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcCC----HHHHHHH
Confidence 12334555566666655 455555555554321 134477788889999999999998632 2223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 043440 380 LLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGD 459 (850)
Q Consensus 380 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (850)
++ ...|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. .|...|..++..+.+.|+
T Consensus 1085 Li---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1085 LI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred HH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCC
Confidence 32 27788999998888652 5678889999999999999999998654 377788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 043440 460 AERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYRE 539 (850)
Q Consensus 460 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 539 (850)
+++|.+.|...++.. +++...+.++.+|++.+++++.... ++ .++...|..+.+.|...|++++|..+|..
T Consensus 1150 yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 999999998887764 3333344588888998888753333 22 34666777888999999999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 043440 540 MHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNT 619 (850)
Q Consensus 540 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 619 (850)
. ..|..++.+|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .++
T Consensus 1221 A---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~ 1280 (1630)
T 1xi4_A 1221 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHA 1280 (1630)
T ss_pred h---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCH
Confidence 5 36888999999999999999998876 266888888888888999988888766533 256
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHH
Q 043440 620 VVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLE--EGKLLTASNLYSEMLSKGIEP------DIIT 691 (850)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~~------~~~~ 691 (850)
..+..++..|.+.|.+++|+.+++..+..+ +.....|+-|...|++ .++..++.+.|..-.. ++| +...
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHL 1357 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHH
Confidence 667788888999999999999998888765 5555667666666654 3456666666664433 333 4557
Q ss_pred HHHHHHHHHhCCCHHHHHHH-------------HHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHH
Q 043440 692 YTVLINGLYGKGQLENARKI-------------FDEMNRKCLTPNVFIFNTLIAGYFKEG---------------NLQEA 743 (850)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A 743 (850)
|.-++-.|.+.|+++.|... |+..+.+ ..|++.|...+.-|...+ +.+.+
T Consensus 1358 W~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~ 1435 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA 1435 (1630)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHH
Confidence 88888889999999988832 2222221 237777777777777666 66666
Q ss_pred HHHHH
Q 043440 744 FRLHN 748 (850)
Q Consensus 744 ~~~~~ 748 (850)
.++|.
T Consensus 1436 V~l~~ 1440 (1630)
T 1xi4_A 1436 VNYFS 1440 (1630)
T ss_pred HHHHH
Confidence 66655
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=8.6e-20 Score=191.75 Aligned_cols=303 Identities=13% Similarity=0.049 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 96 SGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA 175 (850)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (850)
...+..++..+...|++++|+..|+++....+. +..++..++.++...|++++|...|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 456778889999999999999999999887665 5678888999999999999999999998876433 66888889999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHH------------HHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHH
Q 043440 176 CLKEDTTEEAEKYFRDAKALGVK--LDARAYRMV------------IQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNL 241 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 241 (850)
+...|++++|...|+.+.+..+. .+...+..+ ...+...|++++|+..++++.+..+....++..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999876431 134444444 4667777788888888877777554333377777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH------------
Q 043440 242 IGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFA------------ 309 (850)
Q Consensus 242 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------ 309 (850)
+.++...|++++|...++++++.. +.+..++..++..+...|++++|...|++..+..+ .+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHH
Confidence 777777888888887777777654 33667777777777777788888777777776422 2223222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHH
Q 043440 310 VLIEGCCTNGKVEKGYELYTQMKHMGIKPSV----FIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLC 385 (850)
Q Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (850)
.++..+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|+..|+++++..|.+..++..++..+.
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 2244566666666666666666654311 22 123345556666666666666666666666656666666666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 043440 386 KRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~ 403 (850)
..|++++|...|+++.+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 666666666666666654
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2.9e-19 Score=187.67 Aligned_cols=331 Identities=13% Similarity=0.105 Sum_probs=224.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043440 409 VVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIING 488 (850)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 488 (850)
...+..+...+...|++++|...|+++++.. +.+..++..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3455566666666677777777776666642 2345566666666666666666666666666543 3344556666666
Q ss_pred HHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 043440 489 LCKAGRTSVAWDKLKKMVEKGFI--PKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEID 566 (850)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 566 (850)
+...|++++|...++++.+..+. .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 66666666666666666654220 12222222211100 011223356677788888
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 567 LALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMI 646 (850)
Q Consensus 567 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (850)
+|+..++++.+..+ .+...+..+...+...|++++|...++++.+..+ .+..++..++..+...|++++|+..|+++.
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877643 3667777888888888888888888888887643 367778888888888888888888888888
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhCCCHHHHHH
Q 043440 647 NDGIPCDLQTYT------------TLIAGLLEEGKLLTASNLYSEMLSKGIEPDII----TYTVLINGLYGKGQLENARK 710 (850)
Q Consensus 647 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~ 710 (850)
+.. +.+...+. .++..+...|++++|...++++++.. +.+.. .+..+..++.+.|++++|.+
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 764 44444433 33667888999999999999998843 22332 35567788999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 043440 711 IFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKS 770 (850)
Q Consensus 711 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 770 (850)
.++++.+.. +.+..+|..++.+|...|++++|...|+++++..+. +...+..+..+..
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 999998853 237888999999999999999999999999986543 4555555555443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=6.7e-18 Score=184.86 Aligned_cols=352 Identities=15% Similarity=0.109 Sum_probs=182.8
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChh
Q 043440 339 SVFIVNSLLCGFLK----AQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCK----RGKVSEACNLWQKMVSSGVRPSVV 410 (850)
Q Consensus 339 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 410 (850)
+......+...|.. .+++++|+..|+++.+. .+..++..|...|.. .+++++|+..|++..+.| +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 34444444444444 45555555555555544 244455555555555 555555555555555542 334
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhH
Q 043440 411 SYNNMILAHCT----VKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFK----QGDAERAFDVLDQMENAKISPTDYTS 482 (850)
Q Consensus 411 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 482 (850)
.+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444444444 455555555555555543 34444455555544 455555555555555542 34445
Q ss_pred HHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 043440 483 NIIINGLCK----AGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVK----EDDMISALTVYREMHESGLSPNVVTYTI 554 (850)
Q Consensus 483 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 554 (850)
..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555554 455555555555555542 33444444444443 455556666665555543 3344444
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043440 555 LINGFCR----KNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRR-----RDMESACKLFAELLEVGLSPNTVVYNSM 625 (850)
Q Consensus 555 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l 625 (850)
+...|.. .+++++|+..|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 4445544 455555555555555432 333444455555444 55556665555555543 33444555
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043440 626 INGFRNLG---NMEAALDMHRKMINDGIPCDLQTYTTLIAGLLE----EGKLLTASNLYSEMLSKGIEPDIITYTVLING 698 (850)
Q Consensus 626 ~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 698 (850)
...|...| ++++|+++|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..|...
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~ 408 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555444 4555666666555543 34555555555555 555566666665555543 34455555555
Q ss_pred HHh----CCCHHHHHHHHHHHHhCC
Q 043440 699 LYG----KGQLENARKIFDEMNRKC 719 (850)
Q Consensus 699 ~~~----~g~~~~A~~~~~~~~~~~ 719 (850)
|.+ .+++++|...|++..+.+
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 555 555666666666555543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.7e-17 Score=181.75 Aligned_cols=366 Identities=14% Similarity=0.089 Sum_probs=316.4
Q ss_pred HHHHHHHHHHCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 043440 359 AYKLFDEAVDSGIANVFTYNDLLAWLCK----RGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCT----VKNMDEAYS 430 (850)
Q Consensus 359 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 430 (850)
+...+....+. .++.++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+
T Consensus 26 ~~~~~~~~a~~--g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAES--GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34555555554 478888999999998 899999999999999864 66788888888888 899999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHH
Q 043440 431 VFSEMLEKRVTPNVVTYSVLIDGYFK----QGDAERAFDVLDQMENAKISPTDYTSNIIINGLCK----AGRTSVAWDKL 502 (850)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 502 (850)
.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999875 66778888888988 889999999999998865 56778888888887 78999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 043440 503 KKMVEKGFIPKCLTYNSIIDGFVK----EDDMISALTVYREMHESGLSPNVVTYTILINGFCR----KNEIDLALKMRNE 574 (850)
Q Consensus 503 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 574 (850)
++..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999874 67788888888887 899999999999999875 67788888888886 7899999999999
Q ss_pred HHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 043440 575 MMNEGLQLDATAYGSLINGFCR----RRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNL-----GNMEAALDMHRKM 645 (850)
Q Consensus 575 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~ 645 (850)
..+.+ +...+..+...|.. .+++++|+..|++..+.| +...+..+...|... +++++|+..|++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98864 56677778888887 899999999999998764 567788888888887 8999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhC
Q 043440 646 INDGIPCDLQTYTTLIAGLLEEG---KLLTASNLYSEMLSKGIEPDIITYTVLINGLYG----KGQLENARKIFDEMNRK 718 (850)
Q Consensus 646 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 718 (850)
.+.+ +...+..+...|...| ++++|++++++..+.| +...+..|...|.. .+++++|.+.|++..+.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 9976 5677888888888766 7899999999999864 67888999999998 89999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 043440 719 CLTPNVFIFNTLIAGYFK----EGNLQEAFRLHNEMLDKGLV 756 (850)
Q Consensus 719 ~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 756 (850)
+ ++..+..|...|.. .+++++|..+|++..+.++.
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 5 68889999999998 89999999999999987754
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.4e-19 Score=184.70 Aligned_cols=287 Identities=13% Similarity=-0.001 Sum_probs=197.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVM 172 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (850)
+.+..++..++..+...|++++|+.+|+++.+.++. +...+..++.++...|++++|..+++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 455566777888888888888888888888776654 3445666777788888888888888888776432 56677777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCH
Q 043440 173 MRACLKED-TTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNL 251 (850)
Q Consensus 173 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 251 (850)
...+...| ++++|...|+++.+..+. +...|..+...+...|++++|+..++++.+..+....++..++..|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77777777 788888888887766433 5566777777777777888888888777776544444666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCChhH
Q 043440 252 TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGL--------SPNKVTFAVLIEGCCTNGKVEK 323 (850)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~ 323 (850)
++|...++++++..+ .+..++..++..+.+.|++++|...|+++.+... +.+..++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 777777777776543 3566777777777777777777777777665310 2234466666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHH
Q 043440 324 GYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWL 384 (850)
Q Consensus 324 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (850)
|...++++.+.. +.+..++..+...+.+.|++++|...|+++++..|.+..++..+...+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 666666666543 224555666666666666666666666666666666666666666655
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.2e-19 Score=184.03 Aligned_cols=291 Identities=9% Similarity=-0.053 Sum_probs=216.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 043440 130 LLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQ 209 (850)
Q Consensus 130 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 209 (850)
+...+..++..+...|++++|..+|+++.+..+. +...+..++..+...|++++|...++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 4456677888888889999999999888776433 4556666777788888888888888888876543 6677888888
Q ss_pred HHHcCC-ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH
Q 043440 210 ALCRKP-NLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSS 288 (850)
Q Consensus 210 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 288 (850)
.+...| ++++|...|+++.+..+....++..++.++...|++++|+..++++++..+. +...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 888888 8888888888888765544448888888888888888888888888776433 45667778888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHhhHHHHHHHHHhcCCHHHHH
Q 043440 289 ALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG--------IKPSVFIVNSLLCGFLKAQLLEEAY 360 (850)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (850)
|...|+++.+.. +.+...+..++..+...|++++|...++++.+.. .+.+..++..+...+...|++++|+
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887753 3456777888888888888888888888877632 1223457777777788888888888
Q ss_pred HHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCCH
Q 043440 361 KLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAH-CTVKNM 425 (850)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 425 (850)
..|+++++..|.+..++..++..+.+.|++++|...|+++.+..+. +...+..+...+ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCch
Confidence 8888888777777777788888888888888888888777765322 445555555555 344443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.1e-17 Score=182.95 Aligned_cols=431 Identities=13% Similarity=0.088 Sum_probs=242.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 293 LDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIA 372 (850)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 372 (850)
|++.++. .+-+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|++++...|
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Confidence 3444443 2335666776666 356677777777777776642 33556666777777777777777777777776664
Q ss_pred CHhHHHHHHHHH-HhcCCHHHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 043440 373 NVFTYNDLLAWL-CKRGKVSEACN----LWQKMVSS-GVRP-SVVSYNNMILAHCT---------VKNMDEAYSVFSEML 436 (850)
Q Consensus 373 ~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 436 (850)
+...|...+... ...|+.+.|.+ +|++.+.. |..| +...|...+..... .|+++.|..+|++.+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 555666665433 34455555544 55555432 3333 23455555544433 456666666666666
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH------HHCC-
Q 043440 437 EKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKM------VEKG- 509 (850)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~- 509 (850)
+....+....|..........|. ..+. .++. ...+++..|..++.+. .+..
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 52101001122221111000000 0000 0000 0123344555544442 1111
Q ss_pred --CCCC--------HHHHHHHHHHHhc----CCCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCC
Q 043440 510 --FIPK--------CLTYNSIIDGFVK----EDDM----ISALTVYREMHESGLSPNVVTYTILINGFCR-------KNE 564 (850)
Q Consensus 510 --~~~~--------~~~~~~l~~~~~~----~~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~ 564 (850)
+.|+ ...|...+..... .++. +++..+|++.+... +.+...|..++..+.+ .|+
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccc
Confidence 1222 1234333322211 1222 35667777777653 5567777777776665 577
Q ss_pred HH-------HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHH
Q 043440 565 ID-------LALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNT-VVYNSMINGFRNLGNME 636 (850)
Q Consensus 565 ~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 636 (850)
++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|+++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHH
Confidence 65 77777777775212335677777777777778888888888877775221 22 46777777777777788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043440 637 AALDMHRKMINDGIPCDLQTYTTLIAG-LLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEM 715 (850)
Q Consensus 637 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (850)
+|.++|++.++.. +.+...|...+.. +...|+.++|..+|++.++. .+.+...|..++..+.+.|+.++|..+|++.
T Consensus 374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 8888888777653 2233333332222 23477778888888777764 2335667777777777778888888888877
Q ss_pred HhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 716 NRKCL-TP--NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 716 ~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
++.+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76532 22 2446777777777778888877777777653
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3.2e-17 Score=181.47 Aligned_cols=435 Identities=11% Similarity=0.029 Sum_probs=257.6
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043440 224 VKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSP 303 (850)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (850)
|++.++..|....+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|++++.. .|
T Consensus 2 le~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44555544332227777777 467778888888888877753 346677777888777788888888888887763 35
Q ss_pred CHHHHHHHHHHH-HhcCChhHHHH----HHHHHHH-CCCCC-CHhhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 043440 304 NKVTFAVLIEGC-CTNGKVEKGYE----LYTQMKH-MGIKP-SVFIVNSLLCGFLK---------AQLLEEAYKLFDEAV 367 (850)
Q Consensus 304 ~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 367 (850)
+...|..++... ...|+.+.|.+ +|+..+. .|..| +...|...+....+ .|+++.|..+|++++
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 666666666432 34566665554 5555543 23332 34445555444333 445555555555555
Q ss_pred HCCC-CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043440 368 DSGI-AN-VFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVV 445 (850)
Q Consensus 368 ~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 445 (850)
+. | .+ ...|..........|. . +...++. ...+++..|..++..+...
T Consensus 158 ~~-P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~------- 207 (530)
T 2ooe_A 158 VN-PMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETV------- 207 (530)
T ss_dssp TS-CCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHH-------
T ss_pred hc-hhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHH-------
Confidence 52 2 11 1122211111100000 0 0000000 0112233333333321100
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--------hhhHHHHHHHHHHc----CCh----hHHHHHHHHHH
Q 043440 446 TYSVLIDGYFKQGDAERAFDVLDQMENAK---ISPT--------DYTSNIIINGLCKA----GRT----SVAWDKLKKMV 506 (850)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~ 506 (850)
....+.. ++|+ ...|...+...... ++. ..+..+|++++
T Consensus 208 ----------------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 208 ----------------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp ----------------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 0011110 1111 12233332221111 122 35666777777
Q ss_pred HCCCCCCHHHHHHHHHHHhc-------CCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043440 507 EKGFIPKCLTYNSIIDGFVK-------EDDMI-------SALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMR 572 (850)
Q Consensus 507 ~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 572 (850)
... +.+...|..++..+.+ .|+++ +|..+|++.++.-.|.+...|..++..+.+.|++++|..+|
T Consensus 266 ~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 266 LVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 652 2256667666666654 67776 78888888876323556778888888888888888888888
Q ss_pred HHHHHcCCCcC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCC
Q 043440 573 NEMMNEGLQLD-ATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMING-FRNLGNMEAALDMHRKMINDGI 650 (850)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~ 650 (850)
+++++.... + ...|..++..+.+.|++++|.++|++..+.... +...+...+.. +...|++++|..+|++.++..
T Consensus 345 ~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 345 NRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred HHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 888875322 3 247888888888888888888888888875322 33333333222 346888999999999888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 651 PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKG-IEPD--IITYTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
|.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+.++++++.+.
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5577888888888888899999999999988853 2232 447777788778889999999999888774
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=6.9e-19 Score=185.54 Aligned_cols=259 Identities=10% Similarity=0.001 Sum_probs=145.8
Q ss_pred HHhcCChhHHHH-HHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043440 106 YVRADRINDAVD-CCNGMIERDII---PLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDT 181 (850)
Q Consensus 106 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (850)
+...|++++|+. .|++.....+. .+...+..++..+.+.|++++|...|+++.+..+. +..++..++..+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 445678888888 88876654332 13455777888888888999999888888877533 67778888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHH----------------HHHHH
Q 043440 182 TEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTN----------------LIGAC 245 (850)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------l~~~~ 245 (850)
+++|...|+.+.+..+. +..++..++..+...|++++|...++++.+..+.....+.. +...+
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 88888888888776543 67788888888888888888888888888865444332221 22222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 043440 246 VKHGNLTEAFRLKDEMMSCGKPM-NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKG 324 (850)
Q Consensus 246 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (850)
..|++++|...++++++..+.. +..++..++..|.+.|++++|+..|+++.+.. +.+..++..++..+...|++++|
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 4455555555555544432111 24444444455555555555555555444431 12334444444444444444444
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 325 YELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDS 369 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (850)
+..|+++++.. +.+..++..+...|.+.|++++|...|+++++.
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44444444432 123344444444444444444444444444443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.8e-19 Score=186.79 Aligned_cols=258 Identities=12% Similarity=0.028 Sum_probs=136.4
Q ss_pred HHcCCHHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCh
Q 043440 142 VRRNLIDEAKE-FYNKMNLKGLG---VDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNL 217 (850)
Q Consensus 142 ~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 217 (850)
...|++++|.. .|++....... .+...+..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCH
Confidence 34467777777 76655433221 13455667777777777777777777777776433 666777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHH---------------HHHHHHh
Q 043440 218 KVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATS---------------LMKGYYK 282 (850)
Q Consensus 218 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~ 282 (850)
++|+..|+++++..+....++..++.+|...|++++|...++++++..+. +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 77777777777754332227777777777777777777777777765432 2222211 1112224
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043440 283 QGDLSSALELLDKIKEDGLSP-NKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYK 361 (850)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (850)
.|++++|+..|+++.+..+.. +..++..++..+...|++++|+..|+++++.. +.+..++..+...+...|++++|+.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555554432111 24444455555555555555555555544432 2234444445555555555555555
Q ss_pred HHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 362 LFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
.|+++++..|.+..++..++..|.+.|++++|+..|+++.+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555544444444555555555555555555555544443
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.6e-17 Score=179.90 Aligned_cols=386 Identities=14% Similarity=0.013 Sum_probs=246.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIER-----D--IIP-LLRSMNSVLKALVRRNLIDEAKEFYNKMNLK---- 160 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 160 (850)
+.....|+.|+..|...|++++|++.|+++++. + ..| ...+|+.++.+|...|++++|...|++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345668999999999999999999999987642 1 122 3467889999999999999999999887543
Q ss_pred -C-CC-CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHcCCChhHHHHHHHHHHHCCC
Q 043440 161 -G-LG-VDSVTIRVMMRACLK--EDTTEEAEKYFRDAKALGVKLDARAYRMVIQA---LCRKPNLKVACGLVKEMRDMGR 232 (850)
Q Consensus 161 -~-~~-~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~ 232 (850)
+ .. ....++.....++.. .+++++|...|++..+..+. ++..+..+..+ +...++.++|++.++++++.++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 11 134556655555544 45789999999998887544 55565555544 3456788889999998888654
Q ss_pred CCChhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 043440 233 VPSRVYTNLIGACVK----HGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTF 308 (850)
Q Consensus 233 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 308 (850)
....++..++..+.. .|++++|.+.+++..... +.+..++..+...|.+.|++++|+..|++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 433366666655554 456788999998887764 3467788888999999999999999999988753 2355667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcC
Q 043440 309 AVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRG 388 (850)
Q Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 388 (850)
..+...|...+... .... ...........+.++.|...|+++.+..|.+..++..++..|...|
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 66666654321111 1100 0000111112234678888999998888888888899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 043440 389 KVSEACNLWQKMVSSGVRPSVV--SYNNMIL-AHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFD 465 (850)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 465 (850)
++++|+..|++.++....+... .+..+.. .....|++++|+..|.+.++. .|+...... ....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHH
Confidence 9999999999988764433221 2222222 234678888888888888875 333322211 1233444
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 043440 466 VLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKG 509 (850)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (850)
+++.....+ +.+..+|..+...|...|++++|++.|++.++.+
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 555554443 4556777778778888888888888888877654
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.4e-16 Score=174.09 Aligned_cols=383 Identities=14% Similarity=-0.021 Sum_probs=215.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 043440 340 VFIVNSLLCGFLKAQLLEEAYKLFDEAVDS---------GIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS-----G- 404 (850)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 404 (850)
...|+.|...+...|++++|++.|+++++. .+....+|+.++..|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456777777777778888888877776542 2344566777777777777777777777766542 0
Q ss_pred CCC-ChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 043440 405 VRP-SVVSYNNMILAHCT--VKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDG---YFKQGDAERAFDVLDQMENAKISPT 478 (850)
Q Consensus 405 ~~~-~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 478 (850)
..+ ...++.....++.. .+++++|++.|++.++..+ .+...+..+... +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 011 12344444333333 3456667777766665422 234444444333 233455566666666665543 233
Q ss_pred hhhHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 043440 479 DYTSNIIINGLCK----AGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTI 554 (850)
Q Consensus 479 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 554 (850)
..++..+...+.. .+++++|.+.+++.....+ .+..++..+...|...|++++|+..+++..+.. |.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4444444433332 3455666666666665432 244555666666666666666666666666553 444555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043440 555 LINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGN 634 (850)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 634 (850)
+..+|...+.... .. ............+.+++|...+++..+..+. +..++..++..|...|+
T Consensus 287 lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 5544432111100 00 0000000111123467888888888876533 56678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043440 635 MEAALDMHRKMINDGIPCDL--QTYTTLIAG-LLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKI 711 (850)
Q Consensus 635 ~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 711 (850)
+++|++.|+++++....+.. ..+..+... ....|+.++|+..|+++++ +.|+...... ....+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHH
Confidence 99999999999987533322 123333332 3577999999999999998 4565433222 23445666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 712 FDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 712 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
+++.++.+ +.+..+|..++.+|...|++++|++.|++.++.+.
T Consensus 419 ~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 419 AKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77776643 23788999999999999999999999999998764
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=8.7e-18 Score=176.76 Aligned_cols=266 Identities=11% Similarity=-0.009 Sum_probs=159.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043440 480 YTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGF 559 (850)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (850)
..+..+...+.+.|++++|...|+++++..+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..++..|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3455555666666666666666666665432 245566666666666666666666666666653 44566666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCc---------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 043440 560 CRKNEIDLALKMRNEMMNEGLQL---------DATAYGSLINGFCRRRDMESACKLFAELLEVGLSP-NTVVYNSMINGF 629 (850)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 629 (850)
...|++++|+..++++.+..... ....+..+...+...|++++|...|+++.+..+.. +..++..++..|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 66777777777766666542110 11222334566777777777777777777653321 466677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043440 630 RNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENAR 709 (850)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 709 (850)
...|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..++++++.. +.+..++..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777654 5566677777777777777777777777776642 334566677777777777777777
Q ss_pred HHHHHHHhCCCC---C--------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 710 KIFDEMNRKCLT---P--------NVFIFNTLIAGYFKEGNLQEAFRLHNE 749 (850)
Q Consensus 710 ~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (850)
..|+++++.... | +..+|..+..++...|+.+.|.+..++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 777776652110 0 245566777777777777666655443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=7.9e-18 Score=177.07 Aligned_cols=233 Identities=12% Similarity=0.057 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 043440 132 RSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQAL 211 (850)
Q Consensus 132 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (850)
..+..++..+.+.|++++|..+|+++.+..+. +..++..++..+...|++++|...|+++.+..+. +..++..++..+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34555666666666666666666666554322 4555566666666666666666666665554322 455556666666
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChh----------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHH
Q 043440 212 CRKPNLKVACGLVKEMRDMGRVPSRV----------YTNLIGACVKHGNLTEAFRLKDEMMSCGKPM-NLVVATSLMKGY 280 (850)
Q Consensus 212 ~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~ 280 (850)
...|++++|+..|+++.+..+..... +..++..+...|++++|+..++++++..+.. +..++..++..|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 66666666666666655532211111 1223444555555555555555554432111 344444445555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043440 281 YKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAY 360 (850)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (850)
.+.|++++|+..|+++.+.. +.+..+|..++.++...|++++|+..|+++++.. +.+..++..+...|.+.|++++|+
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 55555555555555544431 2233444444444444444444444444444432 112334444444444444444444
Q ss_pred HHHHHHHH
Q 043440 361 KLFDEAVD 368 (850)
Q Consensus 361 ~~~~~~~~ 368 (850)
..|+++++
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=2.3e-17 Score=170.61 Aligned_cols=261 Identities=10% Similarity=0.001 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 043440 134 MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR 213 (850)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (850)
+..++..+...|++++|..+|+++.+..+. +...+..+...+...|++++|...|+++.+..+ .+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 334444555555555555555555443222 444455555555555555555555555554432 244555555566666
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSRVYTNL--------------IG-ACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMK 278 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 278 (850)
.|++++|...++++.+..+.....+..+ .. .+...|++++|...++++++..+ .+..++..++.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 6666666666666655433332233322 22 24555566666666666655432 24555666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043440 279 GYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEE 358 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (850)
.+.+.|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 6666666666666666655542 2234555555555666666666666666555542 2234455555555555556666
Q ss_pred HHHHHHHHHHCCCC------------CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 359 AYKLFDEAVDSGIA------------NVFTYNDLLAWLCKRGKVSEACNLWQK 399 (850)
Q Consensus 359 A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (850)
|.+.|+++++..|. +..+|..+...+.+.|++++|..++++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66555555554443 445555555555555555555555543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=4.3e-17 Score=163.72 Aligned_cols=251 Identities=13% Similarity=0.097 Sum_probs=176.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhH
Q 043440 140 ALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKV 219 (850)
Q Consensus 140 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 219 (850)
-.+..|+++.|+..++......+.+.......+.++|...|++++|...++.. ..|+..++..+...+...|+.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34556666666666665543321111224455667777777777777655431 23456667777777888888888
Q ss_pred HHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 220 ACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIK 297 (850)
Q Consensus 220 A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 297 (850)
|++.++++...+..|+. ++..++.++...|++++|++.+++ +.+..++..++..|.+.|++++|.+.|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888776544544 777777888888888888888876 3567788888888888888888888888887
Q ss_pred HcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCH
Q 043440 298 EDGLSPNKVTF---AVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANV 374 (850)
Q Consensus 298 ~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (850)
+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++++..|.+.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 753 442211 122334445578888888888888763 45677788888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 043440 375 FTYNDLLAWLCKRGKVSE-ACNLWQKMVSS 403 (850)
Q Consensus 375 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 403 (850)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888888888888888765 56788887765
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=4e-17 Score=168.76 Aligned_cols=262 Identities=11% Similarity=-0.018 Sum_probs=139.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 043440 482 SNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCR 561 (850)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 561 (850)
+..+...+...|++++|...|+++++..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 34444455555555555555555554422 144455555555555566666666666555543 4455555556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhhHHHH--------------HH-HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043440 562 KNEIDLALKMRNEMMNEGLQLDATAYGSL--------------IN-GFCRRRDMESACKLFAELLEVGLSPNTVVYNSMI 626 (850)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 626 (850)
.|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+..+. +..++..++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 66666666666665554221 22222222 11 245555666666666666554322 455556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 043440 627 NGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLE 706 (850)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 706 (850)
..|...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++++.. +.+..++..+..++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 66666666666666666665543 4445556666666666666666666666655531 234455555666666666666
Q ss_pred HHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 707 NARKIFDEMNRKCLTP-----------NVFIFNTLIAGYFKEGNLQEAFRLHNE 749 (850)
Q Consensus 707 ~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (850)
+|.+.|+++.+....+ +..+|..++.+|...|++++|...+++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666655432110 244555566666666666666555544
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.6e-17 Score=167.57 Aligned_cols=219 Identities=13% Similarity=0.111 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC 316 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (850)
+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|++.++..++. .+++.+.+.++.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 4444444444444444444444321 23334444444444444444444433333331 222334444444444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043440 317 TNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNL 396 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (850)
+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+ ..|..++.++.+.|++++|++.
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHH
Confidence 4444444444332 133334444444444444444444444433 1344455555555555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 397 WQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKIS 476 (850)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 476 (850)
++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++...... +
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ 238 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-R 238 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-T
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-H
Confidence 5444 144445555555555555555533322211 122222234445555555555555555544332 2
Q ss_pred CChhhHHHHHHHHH
Q 043440 477 PTDYTSNIIINGLC 490 (850)
Q Consensus 477 ~~~~~~~~l~~~~~ 490 (850)
.-...|+-+...|+
T Consensus 239 ah~~~ftel~il~~ 252 (449)
T 1b89_A 239 AHMGMFTELAILYS 252 (449)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23334444433333
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=6.5e-17 Score=164.61 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 043440 133 SMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALC 212 (850)
Q Consensus 133 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (850)
+|..++.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|..+++..++. .+++.+.+.++.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 4444444555555555554444321 23334444444444455555555544444332 223344444455555
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 043440 213 RKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALE 291 (850)
Q Consensus 213 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 291 (850)
+.|+++++.++++ .|+. +|..++..|...|++++|...|..+ ..|..++.++.+.|++++|.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHH
Confidence 5555555444442 1222 4555555555555555555555433 134455555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 292 LLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI 371 (850)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 371 (850)
.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|.+++|+.+++..+...+
T Consensus 170 a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 170 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 55544 134455555555555555555533322211 1111222344455555555555555555554444
Q ss_pred CCHhHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHhcCCHHHHHH
Q 043440 372 ANVFTYNDLLAWLCKR--GKVSEACNLWQKMVSSGVRP------SVVSYNNMILAHCTVKNMDEAYS 430 (850)
Q Consensus 372 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 430 (850)
.....|+-|...|++- ++..+.++.|..-+ +++| +...|..+...|.+.++++.|..
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 4444455544444432 23333333332111 1111 23455555555555555555544
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2.3e-16 Score=158.32 Aligned_cols=277 Identities=9% Similarity=0.019 Sum_probs=216.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043440 103 LRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTT 182 (850)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (850)
++-....|++..|+..+++.....+.+.....-.++++|...|+++.|+..++. ...|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 455668899999999988776554443334556678999999999999987754 2356777888888899999999
Q ss_pred HHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 183 EEAEKYFRDAKALGVKL-DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDE 260 (850)
Q Consensus 183 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 260 (850)
++|.+.++++...+..| +...+..+...+...|++++|+..+++ ..+. ++..++.+|.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998765333 667778888999999999999999987 2334 899999999999999999999999
Q ss_pred HHhCCCCCcHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 043440 261 MMSCGKPMNLVV--ATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKP 338 (850)
Q Consensus 261 ~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 338 (850)
+.+..+. +... ....+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++++.. +.
T Consensus 156 ~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 156 MQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9886422 2211 122334445568999999999999987 45588899999999999999999999999998864 34
Q ss_pred CHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043440 339 SVFIVNSLLCGFLKAQLLEE-AYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNL 396 (850)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (850)
+..++..++..+...|+.++ +.++++++++..|.++.+. ....+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 67888899999999998876 6789999999988776544 334455555555443
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=1.2e-15 Score=163.99 Aligned_cols=345 Identities=14% Similarity=0.058 Sum_probs=158.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcC
Q 043440 138 LKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTT---EEAEKYFRDAKALGVKLDARAYRMVIQALCRK 214 (850)
Q Consensus 138 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 214 (850)
+..+.+.|++++|..+|++..+.| +...+..+...+...|++ ++|...|++..+. ++..+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444445555555554444432 222333333334444444 5555555555432 333344444433333
Q ss_pred C-----ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 043440 215 P-----NLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTE---AFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDL 286 (850)
Q Consensus 215 g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 286 (850)
| ++++|+..|++..+.|. ..++..|+..|...+..++ +...+......| +...+..+...|...+.+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 3 45566666666555321 1255555555555544332 233333333222 233455555556555544
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CCHHHH
Q 043440 287 SSALELLDKIKEDGLSPNKVTFAVLIEGCCTNG---KVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA----QLLEEA 359 (850)
Q Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A 359 (850)
+++......+.+.-...++..+..|...|...| +.++|+..|+...+.| +++...+..|...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 444433222222111222225556666666666 6666666666666655 23344334455555433 566666
Q ss_pred HHHHHHHHHCCCCCHhHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHH
Q 043440 360 YKLFDEAVDSGIANVFTYNDLLAW-L--CKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVK-----NMDEAYSV 431 (850)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~ 431 (850)
+.+|+++. +.++.++..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|.+.
T Consensus 237 ~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 237 QALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 66666665 3455556666655 3 34566666666666666554 4445555555554 33 66666666
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHH
Q 043440 432 FSEMLEKRVTPNVVTYSVLIDGYFK----QGDAERAFDVLDQMENAKISPTDYTSNIIINGLCK----AGRTSVAWDKLK 503 (850)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 503 (850)
|++.. . -+...+..+...|.. ..++++|..+|++..+.| +......|...|.. ..+..+|..+|+
T Consensus 310 ~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 66655 2 244555555555544 235666666666665544 22334444444432 235555666665
Q ss_pred HHHHCC
Q 043440 504 KMVEKG 509 (850)
Q Consensus 504 ~~~~~~ 509 (850)
...+.|
T Consensus 383 ~A~~~g 388 (452)
T 3e4b_A 383 LAKAQD 388 (452)
T ss_dssp HHHTTC
T ss_pred HHHHCC
Confidence 555544
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=2.2e-15 Score=161.85 Aligned_cols=346 Identities=14% Similarity=0.091 Sum_probs=200.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 043440 172 MMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNL---KVACGLVKEMRDMGRVPSRVYTNLIGACVKH 248 (850)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (850)
+...+.+.|++++|...|++..+.| ++.++..+...+...|+. ++|...|++..+. ...++..|+.++...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 4556677888888888888887764 334455566666667776 8888888888753 222677777766565
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043440 249 G-----NLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSS---ALELLDKIKEDGLSPNKVTFAVLIEGCCTNGK 320 (850)
Q Consensus 249 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (850)
| ++++|+.+|++..+.|.+ .++..|...|...+..++ +.+.+.+....| +...+..+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 677888888888876543 266677777776655443 444444444433 23456667777777775
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhc----CCHHHH
Q 043440 321 VEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQ---LLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKR----GKVSEA 393 (850)
Q Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A 393 (850)
++++......+.+.....++..+..|...|...| +.++|+..|++..+.++++...+..+...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 5544444333322212223346777777777777 788888888888888777777767777777554 677788
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-----CHHHHHH
Q 043440 394 CNLWQKMVSSGVRPSVVSYNNMILA-H--CTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQG-----DAERAFD 465 (850)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~ 465 (850)
+..|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|+.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 88887776 32 44555555555 3 35677777777777777664 5566666666665 44 7777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChHHHHHHH
Q 043440 466 VLDQMENAKISPTDYTSNIIINGLCK----AGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVK----EDDMISALTVY 537 (850)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 537 (850)
+|++.. . .++..+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|...|
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 777666 2 344555556555554 2366667777776666542 2334444444442 34566666666
Q ss_pred HHHHHcC
Q 043440 538 REMHESG 544 (850)
Q Consensus 538 ~~~~~~~ 544 (850)
+...+.|
T Consensus 382 ~~A~~~g 388 (452)
T 3e4b_A 382 QLAKAQD 388 (452)
T ss_dssp HHHHTTC
T ss_pred HHHHHCC
Confidence 6666555
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.8e-15 Score=146.47 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cC----HhhHH
Q 043440 515 LTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQ--LD----ATAYG 588 (850)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 588 (850)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|+..++++.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666777777777777777777777765 56677777777777777888887777777654211 11 46777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043440 589 SLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEG 668 (850)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 668 (850)
.+...|...|++++|...|+++.+.. |+. ..+.+.|++++|+..++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 88888888888888888888888753 342 34666788899999999988874 556778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 669 KLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 669 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (850)
++++|...++++++.. +.+..++..+..++...|++++|...|+++++.. +.+..+|..++.+|...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999998853 4467788899999999999999999999998853 2368889999999999999999999999
Q ss_pred HHHHCC
Q 043440 749 EMLDKG 754 (850)
Q Consensus 749 ~~~~~g 754 (850)
++++..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 988754
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=177.11 Aligned_cols=154 Identities=10% Similarity=0.140 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043440 616 SPNTVVYNSMINGFRNLGNMEAALDMHRKMIN---DGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITY 692 (850)
Q Consensus 616 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 692 (850)
..-..+|++||++|++.|++++|.++|.+|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467899999999999999999999988764 378899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 043440 693 TVLINGLYGKGQL-ENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD------DTTYDIL 765 (850)
Q Consensus 693 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l 765 (850)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ .-+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999984 78899999999999999999999998776665 344444444 3344544 3444556
Q ss_pred HhhhhcCCc
Q 043440 766 VNGKSRSDT 774 (850)
Q Consensus 766 ~~~~~~~g~ 774 (850)
.+.|.+.+.
T Consensus 279 ~dl~s~d~~ 287 (1134)
T 3spa_A 279 RDVYAKDGR 287 (1134)
T ss_dssp HHHHCCCSC
T ss_pred HHHHccCCC
Confidence 677776653
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=2.9e-15 Score=143.53 Aligned_cols=196 Identities=15% Similarity=0.031 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 548 NVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMIN 627 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 627 (850)
+...+..+...+.+.|++++|+..|++.++..+. +...+..+...+.+.|++++|+..|++.++..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3344444444444444444444444444443221 3444444444444444444444444444443322 3344444444
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 628 GFRNL-----------GNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLI 696 (850)
Q Consensus 628 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 696 (850)
++... |++++|+..|+++++.+ |.+..++..+..++...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 55555555555554443 3344444555555555555555555555554433 3444444555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNE 749 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (850)
.++...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555554421 11344444555555555555555544444
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.9e-15 Score=145.91 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMN 158 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 158 (850)
.+..++..|...|++++|+..|+++.+.. .+..++..++.++...|++++|...|++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444444444444444444444444433 333444444444444444444444444443
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=3.1e-15 Score=143.37 Aligned_cols=198 Identities=15% Similarity=0.028 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043440 200 DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKG 279 (850)
Q Consensus 200 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 279 (850)
+...+..+...+.+.|++++|+..|+++++..+....++..++.++.+.|++++|+..+++.++..+ .+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3444555555555555555555555555554333222555555566666666666666665555432 245555555555
Q ss_pred HHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 043440 280 YYKQ-----------GDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLC 348 (850)
Q Consensus 280 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 348 (850)
+.+. |++++|+..|++..+..+ .+...+..+...+...|++++|+..|+++++.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 6555 677777777777666422 245566666667777777777777777776665 45666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 349 GFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMV 401 (850)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (850)
.|...|++++|+..|+++++..|.+..++..+...+...|++++|+..|++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777777777777777777766667777777777777777777777666543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=2.6e-14 Score=143.07 Aligned_cols=246 Identities=13% Similarity=0.046 Sum_probs=143.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHc
Q 043440 136 SVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGV--KLDARAYRMVIQALCR 213 (850)
Q Consensus 136 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 213 (850)
..+..+...|++++|+..|++..+..+. +...+..+...+...|++++|...|+.+..... ......|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444221 233455555555555555555555555554221 1123345666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELL 293 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (850)
.|++++|+..|+++.+..+....++..++.+|...|++++|+..+++.++.. +.+..+|..+...+...+++++|.+.|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766666544433477777777777777777777777776653 335566666663333445777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HhhHHHHHHHHHhcCCHHHHHHHH
Q 043440 294 DKIKEDGLSPNKVTFAVLIEGCCTNGK---VEKGYELYTQMKHMG-IKPS------VFIVNSLLCGFLKAQLLEEAYKLF 363 (850)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 363 (850)
+++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ..++..+...|...|++++|+..|
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7776642 2235566666666666666 666777777665531 0122 145566667777777777777777
Q ss_pred HHHHHCCCCCHhHHHHHHHHH
Q 043440 364 DEAVDSGIANVFTYNDLLAWL 384 (850)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~ 384 (850)
+++++..|.+..++..+....
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC---
T ss_pred HHHHhcCccHHHHHHHhhhhh
Confidence 777777776666665554443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=2.8e-14 Score=147.93 Aligned_cols=248 Identities=8% Similarity=-0.018 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 043440 132 RSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDT-TEEAEKYFRDAKALGVKLDARAYRMVIQA 210 (850)
Q Consensus 132 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (850)
..++.++.++.+.|++++|+..|++++...+. +...|..+...+...|+ +++|+..|++++...+. +..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 44566666677777777777777777665433 55666666667777775 77777777777665543 66667777777
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCChhHH
Q 043440 211 LCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYK-QGDLSSA 289 (850)
Q Consensus 211 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A 289 (850)
+...|++++|+..|+++++.++....+|..++.++.+.|++++|+..++++++..+. +..+|+.+..++.+ .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 777777777777777777754443337777777777777777777777777765432 66677777777766 4544666
Q ss_pred -----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--------
Q 043440 290 -----LELLDKIKEDGLSPNKVTFAVLIEGCCTNG--KVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQ-------- 354 (850)
Q Consensus 290 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 354 (850)
+..|++.++.. +-+...|+.+...+...| ++++|++.+..+ +.. +.+...+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchH
Confidence 36666666642 224556666666666666 466676666665 321 334555666666666553
Q ss_pred -CHHHHHHHHHHH-HHCCCCCHhHHHHHHHHHH
Q 043440 355 -LLEEAYKLFDEA-VDSGIANVFTYNDLLAWLC 385 (850)
Q Consensus 355 -~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~ 385 (850)
.+++|+++|+++ .+.+|.....|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 246666666666 5665555555655555443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=2.6e-14 Score=148.20 Aligned_cols=248 Identities=10% Similarity=0.074 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 043440 514 CLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNE-IDLALKMRNEMMNEGLQLDATAYGSLIN 592 (850)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 592 (850)
...|..+...+...|++++|+..|+++++.. +.+...|+.+..++...|+ +++|+..++++++.... +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3567778888888999999999999998875 6678889999999999996 99999999999987544 7889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 043440 593 GFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLE-EGKLL 671 (850)
Q Consensus 593 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 671 (850)
++...|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|+++++.+ +.+..+|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999988655 78899999999999999999999999999986 7788999999999998 66657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------
Q 043440 672 TA-----SNLYSEMLSKGIEPDIITYTVLINGLYGKG--QLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEG------ 738 (850)
Q Consensus 672 ~A-----~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 738 (850)
+| +..++++++.. +-+...|..+..++.+.| ++++|++.++++ +. .+.+..++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 58899998842 346778999999999888 689999999998 43 2347888999999999874
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHhhhh
Q 043440 739 ---NLQEAFRLHNEM-LDKGLVPD-DTTYDILVNGKS 770 (850)
Q Consensus 739 ---~~~~A~~~~~~~-~~~g~~p~-~~~~~~l~~~~~ 770 (850)
..++|+++|+++ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 359999999999 664 444 444555554443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=2.2e-14 Score=143.57 Aligned_cols=250 Identities=12% Similarity=0.094 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--HhhHHHHHHH
Q 043440 516 TYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLD--ATAYGSLING 593 (850)
Q Consensus 516 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~ 593 (850)
.+......+...|++++|+..|+++++.. +.+...+..+...+...|++++|+..++++.+....++ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455667778888888888888887764 44555777788888888888888888888877431111 2347788888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043440 594 FCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTA 673 (850)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 673 (850)
|...|++++|+..|++..+..+. +..++..++..|...|++++|+..|+++++.. +.+..++..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999998888886543 66788888889999999999999999888874 66778888888344445699999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 043440 674 SNLYSEMLSKGIEPDIITYTVLINGLYGKGQ---LENARKIFDEMNRKC-LTPN------VFIFNTLIAGYFKEGNLQEA 743 (850)
Q Consensus 674 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A 743 (850)
.+.++++++.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998842 3346777788888888888 888999888887631 1122 25788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 043440 744 FRLHNEMLDKGLVPDDTTYDILVNGKS 770 (850)
Q Consensus 744 ~~~~~~~~~~g~~p~~~~~~~l~~~~~ 770 (850)
++.|+++++..+. +...+..+.....
T Consensus 241 ~~~~~~al~~~p~-~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 241 DAAWKNILALDPT-NKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHC----
T ss_pred HHHHHHHHhcCcc-HHHHHHHhhhhhc
Confidence 9999999986543 4555555544433
No 46
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=172.49 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=125.0
Q ss_pred CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043440 581 QLDATAYGSLINGFCRRRDMESACKLFAELLE---VGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTY 657 (850)
Q Consensus 581 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 657 (850)
..-..+|+++|++||+.|++++|.++|.+|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 043440 658 TTLIAGLLEEGKL-LTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPN------VFIFNTL 730 (850)
Q Consensus 658 ~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l 730 (850)
++||.++++.|+. ++|.++|++|.+.|+.||.++|++++..+.+. ..++.++++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999998765543 334444444 2334443 3334445
Q ss_pred HHHHHhcC
Q 043440 731 IAGYFKEG 738 (850)
Q Consensus 731 ~~~~~~~g 738 (850)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 55555554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=5.2e-13 Score=133.47 Aligned_cols=225 Identities=12% Similarity=-0.005 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHhhHH
Q 043440 513 KCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCR----KNEIDLALKMRNEMMNEGLQLDATAYG 588 (850)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 588 (850)
+..++..+...|...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456666777777777888888888877773 355667777777777 888888888888887764 667777
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043440 589 SLINGFCR----RRDMESACKLFAELLEVGLSPNTVVYNSMINGFRN----LGNMEAALDMHRKMINDGIPCDLQTYTTL 660 (850)
Q Consensus 589 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 660 (850)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888888764 67778888888888 888999999998888875 56677788
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043440 661 IAGLLE----EGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYG----KGQLENARKIFDEMNRKCLTPNVFIFNTLIA 732 (850)
Q Consensus 661 ~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 732 (850)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 889999999999888853 56777888888888 899999999999988864 3778888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCC
Q 043440 733 GYFK----EGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 733 ~~~~----~g~~~~A~~~~~~~~~~g~ 755 (850)
+|.. .|++++|++.|++..+.|+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9988 8999999999999988763
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=8.3e-13 Score=132.01 Aligned_cols=225 Identities=13% Similarity=0.017 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043440 94 LDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVR----RNLIDEAKEFYNKMNLKGLGVDSVTI 169 (850)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 169 (850)
.+..++..++..|...|++++|+..|+++.+.+ +...+..++..|.. .|++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455667778888888888888888888877732 44567777777877 888888888888777764 66677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCChhHHHH
Q 043440 170 RVMMRACLK----EDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR----KPNLKVACGLVKEMRDMGRVPSRVYTNL 241 (850)
Q Consensus 170 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l 241 (850)
..+...+.. .+++++|...|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ +..++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 777777777 777777777777777653 66677777777776 777777777777777754 22266677
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 242 IGACVK----HGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYK----QGDLSSALELLDKIKEDGLSPNKVTFAVLIE 313 (850)
Q Consensus 242 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 313 (850)
+.+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+. ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 777776 777777777777776653 45566667777777 7777777777777766432 455666666
Q ss_pred HHHh----cCChhHHHHHHHHHHHCC
Q 043440 314 GCCT----NGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 314 ~~~~----~g~~~~A~~~~~~~~~~~ 335 (850)
.|.. .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 667777777777766654
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.7e-11 Score=135.59 Aligned_cols=455 Identities=12% Similarity=0.065 Sum_probs=306.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---HHHHHH
Q 043440 285 DLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQL---LEEAYK 361 (850)
Q Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 361 (850)
...+-+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.+. ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666666666653 458899999999999999999999999999886 45567788888888888888 999999
Q ss_pred HHHHHHHCCC--CCHhHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHH--------
Q 043440 362 LFDEAVDSGI--ANVFTYNDLLAWLCKRGKV--------SEACNLWQKMVS-SGV-RPS-VVSYNNMILAHC-------- 420 (850)
Q Consensus 362 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~-------- 420 (850)
+|++++...+ +++..|...+....+.++. +...++|+..+. .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999999884 7888898888877766654 334477777664 355 454 356766665433
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHH
Q 043440 421 -TVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAW 499 (850)
Q Consensus 421 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 499 (850)
..++++.+..+|..++......-..+|......-...+. ..+..++.+ ...+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHH
Confidence 234567788888888853111112233222111111010 001111111 011223333
Q ss_pred HHHHHHHHC--CC----C-----------C--C------HHHHHHHHHHHhcCC-------ChHHHHHHHHHHHHcCCCC
Q 043440 500 DKLKKMVEK--GF----I-----------P--K------CLTYNSIIDGFVKED-------DMISALTVYREMHESGLSP 547 (850)
Q Consensus 500 ~~~~~~~~~--~~----~-----------~--~------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~ 547 (850)
..+.++... ++ + | + ...|...+.--...+ ..+.+..+|++.+.. ++.
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 333332110 00 0 1 0 123444443322222 123456788888876 377
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC---------CC
Q 043440 548 NVVTYTILINGFCRKNEIDLAL-KMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGL---------SP 617 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~p 617 (850)
+...|...+..+...|+.++|. .++++.... .+.+...|...+...-+.|++++|.++|+.++.... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 8889999999888899999996 999999875 345677788888889999999999999999886410 13
Q ss_pred ------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 043440 618 ------------NTVVYNSMINGFRNLGNMEAALDMHRKMIND-GIPCDLQTYTTLIAGLLEE-GKLLTASNLYSEMLSK 683 (850)
Q Consensus 618 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 683 (850)
...+|...+....+.|..+.|..+|.++++. . +.....|...+..-.+. ++.+.|..+|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1346788888888899999999999999986 3 22334444433333344 4589999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043440 684 GIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP--NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTT 761 (850)
Q Consensus 684 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 761 (850)
++.+...|...+......|+.+.|..+|++.++...++ ....|...+.--.+.|+.+.+.++.+++.+.-+.. ..
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~--~~ 576 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV--NK 576 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC--CH
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cH
Confidence 55677788888888888999999999999999864322 45679999999999999999999999999866543 33
Q ss_pred HHHHHhhh
Q 043440 762 YDILVNGK 769 (850)
Q Consensus 762 ~~~l~~~~ 769 (850)
...+.+-|
T Consensus 577 ~~~f~~ry 584 (679)
T 4e6h_A 577 LEEFTNKY 584 (679)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 34444433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.2e-14 Score=142.66 Aligned_cols=95 Identities=11% Similarity=-0.092 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC 316 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (850)
++..++.++...|++++|...|+++++..+ .+..+|..++..|...|++++|+..|+++.+.. +.+..++..++..+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 444444444444444444444444444321 134444444444444444444444444444431 112334444444444
Q ss_pred hcCChhHHHHHHHHHHH
Q 043440 317 TNGKVEKGYELYTQMKH 333 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~ 333 (850)
..|++++|...|+.+.+
T Consensus 123 ~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44444444444444444
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.1e-14 Score=142.77 Aligned_cols=197 Identities=12% Similarity=-0.015 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 043440 202 RAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYY 281 (850)
Q Consensus 202 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 281 (850)
.++..++..+...|++++|...|+++++..+....++..++.+|...|++++|...|+++++..+ .+..++..++..|.
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHH
Confidence 33444444455555555555555555443322222555555555555555555555555544321 23445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043440 282 KQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYK 361 (850)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (850)
+.|++++|...|+++.+. .|+.......+..+...|++++|...+....... +++...+ .++..+...++.++|..
T Consensus 123 ~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHH
Confidence 555555555555555542 2222222223333344455555555555444432 1222222 24444445555555555
Q ss_pred HHHHHHHCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 362 LFDEAVDSGI----ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.++++....+ .+..++..++..|...|++++|+..|+++...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5555544332 11345555666666666666666666666554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=7.9e-14 Score=136.81 Aligned_cols=211 Identities=16% Similarity=0.099 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043440 549 VVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMING 628 (850)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 628 (850)
...+..+...+...|++++|...++++.+... .+...+..+...|...|++++|...++++.+.... +..++..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 34455555556666666666666666665432 24566666666667777777777777776665322 56666777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043440 629 FRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENA 708 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 708 (850)
|...|++++|++.|+++.+.. +.+...+..++..+...|++++|...++++++.. +.+...+..++..+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777664 5566677777777777777777777777777642 34566777777778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043440 709 RKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDIL 765 (850)
Q Consensus 709 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 765 (850)
.+.|+++.+.. +.+..+|..++.+|...|++++|...++++++..+. +...+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 233 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHH
Confidence 88888877642 235777888888888888888888888888775543 34444443
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=5.4e-13 Score=131.62 Aligned_cols=202 Identities=15% Similarity=0.035 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043440 549 VVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMING 628 (850)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 628 (850)
...+..++..+...|++++|...++++.+... .+..++..+...|...|++++|.+.++++.+.... +...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 34455666666667777777777777666532 25666677777777777777777777777765432 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043440 629 FRNLGNMEAALDMHRKMINDGI-PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN 707 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 707 (850)
|...|++++|++.|+++.+.+. +.+...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888776222 3355677778888888888888888888887742 3456778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 708 ARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 708 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
|...++++.+.. +.+...+..++.++...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888887753 2367778888888888888888888888888754
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.2e-13 Score=132.41 Aligned_cols=198 Identities=12% Similarity=0.002 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 043440 204 YRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ 283 (850)
Q Consensus 204 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 283 (850)
+..+...+...|++++|...|+++.+..+....++..++.+|...|++++|...++++++..+ .+...+..++..|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHH
Confidence 444444444555555555555554443222211445555555555555555555555544321 2344455555555555
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043440 284 GDLSSALELLDKIKEDGLSP-NKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKL 362 (850)
Q Consensus 284 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (850)
|++++|.+.|+++.+.+..| +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554411112 23344444555555555555555555554432 22344445555555555555555555
Q ss_pred HHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 363 FDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
++++.+..+.+...+..+...+...|++++|...++++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555555545555555555555555555555555555543
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=7e-14 Score=137.16 Aligned_cols=199 Identities=14% Similarity=0.077 Sum_probs=73.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHH
Q 043440 174 RACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTE 253 (850)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (850)
..+...|++++|...|+++.+..+. +...+..+...+...|++++|+..++++.+..+....++..++.++...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHH
Confidence 3333334444444444433332211 333333344444444444444444444433222111134444444444444444
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 254 AFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
|...++++.+..+ .+...+..++..+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|...++++.+
T Consensus 110 A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 110 AKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444433321 133334444444444444444444444443321 12333344444444444444444444444433
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhH
Q 043440 334 MGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFT 376 (850)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (850)
.. +.+..++..+...|...|++++|...|+++++..|.+..+
T Consensus 188 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 188 QD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred hC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 32 1123333444444444444444444444444444333333
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=7.5e-13 Score=127.95 Aligned_cols=204 Identities=12% Similarity=0.011 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 548 NVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMIN 627 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 627 (850)
+...+..++..+...|++++|...++++.+... .+...+..+...|...|++++|.+.++++.+.... +..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 445566666667777777777777777666532 24566677777777777777777777777765432 5667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043440 628 GFRNL-GNMEAALDMHRKMINDGI-PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQL 705 (850)
Q Consensus 628 ~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 705 (850)
.+... |++++|+..|+++.+.+. +.+...+..++.++...|++++|...++++++.. +.+...+..++.++.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 888888888877777311 2335677777777888888888888888877742 33466777788888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 706 ENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 706 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
++|...++++.+.....+...+..++..+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888887775321466667777777788888888888888877643
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=5.3e-11 Score=131.70 Aligned_cols=455 Identities=10% Similarity=0.038 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHH
Q 043440 251 LTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGK---VEKGYEL 327 (850)
Q Consensus 251 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 327 (850)
..+-+..|++.+..+ +.|...|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445566677776665 459999999999999999999999999999987 55677889999998888898 9999999
Q ss_pred HHHHHHCC-CCCCHhhHHHHHHHHHhcCCH--------HHHHHHHHHHHHC----CCCCHhHHHHHHHHHHh--------
Q 043440 328 YTQMKHMG-IKPSVFIVNSLLCGFLKAQLL--------EEAYKLFDEAVDS----GIANVFTYNDLLAWLCK-------- 386 (850)
Q Consensus 328 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-------- 386 (850)
|++.+... .+|++..|...+....+.++. +...++|+.++.. .+.+...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99999863 137888888877766555543 3455888887753 34456788888877543
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 043440 387 -RGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFD 465 (850)
Q Consensus 387 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 465 (850)
.++++.+..+|++++......-..+|..... +.+.-+...+..++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHH
Confidence 4457889999999986311111123322211 11100000111111110 112333444
Q ss_pred HHHHHHh--CCC----C-----------C--C------hhhHHHHHHHHHHcC-------ChhHHHHHHHHHHHCCCCCC
Q 043440 466 VLDQMEN--AKI----S-----------P--T------DYTSNIIINGLCKAG-------RTSVAWDKLKKMVEKGFIPK 513 (850)
Q Consensus 466 ~~~~~~~--~~~----~-----------~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~ 513 (850)
.+.++.. .++ + | + ...|...+..--..+ ..+....+|++++... .-.
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCC
Confidence 4433211 011 1 1 0 123444443322222 1234567788888763 336
Q ss_pred HHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------Cc-
Q 043440 514 CLTYNSIIDGFVKEDDMISAL-TVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGL---------QL- 582 (850)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~- 582 (850)
...|...+.-+...|+.++|. .+|++.... +|.+...|...+...-+.|+++.|..+|+.++.... .|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 777877787778888888996 999999875 467777788888888899999999999999876310 12
Q ss_pred -----------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 043440 583 -----------DATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNL-GNMEAALDMHRKMINDGI 650 (850)
Q Consensus 583 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 650 (850)
...+|...+....+.|..+.|..+|.++.+.-..+....|...+..-.+. ++.+.|..+|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 13468888888888899999999999998761112334444433333444 4589999999999987 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043440 651 PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEP--DIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFN 728 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 728 (850)
+.+...+...++.....|+.+.|..+|++++....++ ....|...+.--.+.|+.+.+.++.+++.+.. |+.....
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHH
Confidence 6677778888888888999999999999999863222 34578888888889999999999999999864 4433334
Q ss_pred HHHHHH
Q 043440 729 TLIAGY 734 (850)
Q Consensus 729 ~l~~~~ 734 (850)
.+++-|
T Consensus 579 ~f~~ry 584 (679)
T 4e6h_A 579 EFTNKY 584 (679)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.1e-12 Score=126.69 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043440 134 MNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAK 193 (850)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (850)
+..++..+...|++++|...|+++.+..+ .+...+..+...+...|++++|...|+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 69 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQAL 69 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444444433321 123333333444444444444444444433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=147.85 Aligned_cols=203 Identities=14% Similarity=0.073 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CC
Q 043440 94 LDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPL---LRSMNSVLKALVRRNLIDEAKEFYNKMNLK----GLG-VD 165 (850)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~ 165 (850)
.....+..++..+...|++++|+..|++++..++... ..++..++.++...|++++|...|++.... +.. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4555677788888999999999999998887654421 356778888888889999998888876432 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHcCCC--------------------hhHH
Q 043440 166 SVTIRVMMRACLKEDTTEEAEKYFRDAKALGVK-LD----ARAYRMVIQALCRKPN--------------------LKVA 220 (850)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A 220 (850)
..++..+...+...|++++|...++++...... .+ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 345566666777777777777777766542100 01 2345555555556666 5555
Q ss_pred HHHHHHHHHC----CCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-cHHHHHHHHHHHHhcCChhHH
Q 043440 221 CGLVKEMRDM----GRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCG----KPM-NLVVATSLMKGYYKQGDLSSA 289 (850)
Q Consensus 221 ~~~~~~~~~~----~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A 289 (850)
...+++..+. +..+.. ++..++.+|...|++++|...+++.++.. .++ ...++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 5555554331 111111 44445555555555555555554443210 000 012344444444444444444
Q ss_pred HHHHHHH
Q 043440 290 LELLDKI 296 (850)
Q Consensus 290 ~~~~~~~ 296 (850)
...+++.
T Consensus 247 ~~~~~~a 253 (406)
T 3sf4_A 247 SEYYKKT 253 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1e-13 Score=148.07 Aligned_cols=130 Identities=11% Similarity=0.043 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hh
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDSGI--AN----VFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVR-PS----VV 410 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 410 (850)
++..+...|...|++++|+..++++++..+ ++ ..++..++..|...|++++|+..+++..+.... ++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 444555555555666666665555544322 11 225555566666666666666666555432100 01 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 411 SYNNMILAHCTVKNMDEAYSVFSEMLEKRV----TP-NVVTYSVLIDGYFKQGDAERAFDVLDQME 471 (850)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (850)
++..+...+...|++++|...+++..+... .+ ...++..+...|...|++++|...+++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555443200 00 12344455555555555555555555543
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=1.1e-12 Score=122.24 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=138.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 583 DATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIA 662 (850)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 662 (850)
+..+|..+...|...|++++|++.|++.++..+. +..++..++.+|.+.|++++|+..++++.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5677888888888888888888888888887544 67788888888888899999998888888775 567778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043440 663 GLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQE 742 (850)
Q Consensus 663 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 742 (850)
.+...++++.|...++++.+. .+.+...+..+..++.+.|++++|++.|++.++.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888889999999999888874 24467788888889999999999999999988843 2277889999999999999999
Q ss_pred HHHHHHHHHHC
Q 043440 743 AFRLHNEMLDK 753 (850)
Q Consensus 743 A~~~~~~~~~~ 753 (850)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998874
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.9e-13 Score=146.11 Aligned_cols=274 Identities=14% Similarity=0.049 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIERDIIPL---LRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMR 174 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (850)
.+..++..+...|++++|+..|+++++.++... ..++..++.+|...|++++|...|++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence 344455566666666666666666655433311 1345555566666666666666665543320
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCCh--hHHHHHHHHHh
Q 043440 175 ACLKEDTTEEAEKYFRDAKALG-VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMG----RVPSR--VYTNLIGACVK 247 (850)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~--~~~~l~~~~~~ 247 (850)
...+ ......++..+...+...|++++|...++++.+.. ..+.. ++..++.+|..
T Consensus 117 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 117 ------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 0000 00122334444455555555555555555544321 01111 55566666666
Q ss_pred cCC-----------------HHHHHHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC
Q 043440 248 HGN-----------------LTEAFRLKDEMMSC----GK-PMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLS-PN 304 (850)
Q Consensus 248 ~g~-----------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 304 (850)
.|+ +++|+..+++.++. +. +....++..+...|...|++++|+..|++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666655554331 11 112235566666666677777777766666542100 01
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----
Q 043440 305 ----KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIK-----PSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI---- 371 (850)
Q Consensus 305 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 371 (850)
..++..+...+...|++++|...+++....... ....++..+...|...|++++|...+++++...+
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 124555666666666666666666665442100 0123444555555555555555555555544321
Q ss_pred --CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 372 --ANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 372 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
....++..+...|...|++++|...|++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1122444455555555555555555555443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.5e-13 Score=146.98 Aligned_cols=276 Identities=13% Similarity=0.062 Sum_probs=164.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHHHCC----C-CCCHHH
Q 043440 446 TYSVLIDGYFKQGDAERAFDVLDQMENAKISPTD----YTSNIIINGLCKAGRTSVAWDKLKKMVEKG----F-IPKCLT 516 (850)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~ 516 (850)
.+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...++++++.. . .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556666677777777776666543 1122 245555566666666666666666654420 0 111233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHH
Q 043440 517 YNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEG-LQLDATAYGSLINGFC 595 (850)
Q Consensus 517 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~ 595 (850)
+..+...|...|++++|...+++..+... ..+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 44444445555555555555544433200 000 0112234445555555
Q ss_pred ccCC-----------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 043440 596 RRRD-----------------MESACKLFAELLEV----GLS-PNTVVYNSMINGFRNLGNMEAALDMHRKMINDGI-PC 652 (850)
Q Consensus 596 ~~g~-----------------~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 652 (850)
..|+ +++|++.+.+..+. +.. ....++..+...|...|++++|+..|+++++... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 56666655554432 111 1234666777778888888888888887765410 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----
Q 043440 653 D----LQTYTTLIAGLLEEGKLLTASNLYSEMLSKG--IE---PDIITYTVLINGLYGKGQLENARKIFDEMNRKC---- 719 (850)
Q Consensus 653 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 719 (850)
+ ..++..+...|...|++++|...++++++.. .. ....++..+...+...|++++|...+++.++..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 2367778888888888888888888877521 00 114567788888889999999999998887531
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 720 LTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 720 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
..+ ...++..++.+|...|++++|..++++.++.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 001 2457888899999999999999999998864
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=4.3e-13 Score=138.86 Aligned_cols=274 Identities=15% Similarity=0.049 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043440 98 VFSYLLRSYVRADRINDAVDCCNGMIERDIIPL---LRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMR 174 (850)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (850)
.+...+..+...|++++|+..|+++.+..+... ..++..++..+...|++++|...+++..+...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------ 74 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------------ 74 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------
Confidence 344455666666666666666666665543311 24455566666666666666666665432200
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC----CC-h-hHHHHHHHHHh
Q 043440 175 ACLKEDTTEEAEKYFRDAKALG-VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRV----PS-R-VYTNLIGACVK 247 (850)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~-~-~~~~l~~~~~~ 247 (850)
..+ ......++..+...+...|++++|...++++.+.... +. . ++..++..+..
T Consensus 75 -------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 75 -------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp -------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 000 0001223344444444445555555544444332110 00 1 44555555555
Q ss_pred cCC--------------------HHHHHHHHHHHHhC----C-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-
Q 043440 248 HGN--------------------LTEAFRLKDEMMSC----G-KPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGL- 301 (850)
Q Consensus 248 ~g~--------------------~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 301 (850)
.|+ +++|...+++.+.. + .+....++..+...+...|++++|...+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555444321 1 011123455555666666666666666665543200
Q ss_pred CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 043440 302 SPN----KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIK-PS----VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI- 371 (850)
Q Consensus 302 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 371 (850)
.++ ..++..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...++++++..+
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 001 124455555555666666666665555432100 01 23344444455555555555555554443221
Q ss_pred -CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 372 -AN----VFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 372 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
.+ ..++..+...|.+.|++++|...+++..+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11 22344444444444444444444444443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=1.2e-11 Score=125.69 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 043440 531 ISALTVYREMHESGLSPNVVTYTILINGFCR-------KNEI-------DLALKMRNEMMNEGLQLDATAYGSLINGFCR 596 (850)
Q Consensus 531 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 596 (850)
++|..+|++.+... +.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887764 6677788877777653 4775 8999999999883123366789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 043440 597 RRDMESACKLFAELLEVGLSPNTV-VYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLL-EEGKLLTAS 674 (850)
Q Consensus 597 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 674 (850)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|+++++.+ +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999985322 343 88999999999999999999999999875 455566655444432 369999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 675 NLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKC-LTP--NVFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 675 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
.+|+++++. .+.+...|..++..+.+.|++++|..+|++.++.. ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999885 24467889999999999999999999999999863 344 57789999999999999999999999998
Q ss_pred HCCC
Q 043440 752 DKGL 755 (850)
Q Consensus 752 ~~g~ 755 (850)
+..+
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 7554
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=5.7e-13 Score=137.96 Aligned_cols=275 Identities=17% Similarity=0.093 Sum_probs=161.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 447 YSVLIDGYFKQGDAERAFDVLDQMENAKISPT----DYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIID 522 (850)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 522 (850)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.++++++...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------ 74 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------------ 74 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------
Confidence 3344455556666666666666665542 112 13444455555555555555555555443200
Q ss_pred HHhcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC----HhhHHHHHHHHHc
Q 043440 523 GFVKEDDMISALTVYREMHESGL-SPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQ-LD----ATAYGSLINGFCR 596 (850)
Q Consensus 523 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~ 596 (850)
..+. +....++..+...+...|++++|...+++..+.... ++ ..++..+...|..
T Consensus 75 -------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 75 -------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp -------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 0000 011233444444455555555555555544331000 01 2244555555666
Q ss_pred cCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 043440 597 RRD--------------------MESACKLFAELLEV----GLSP-NTVVYNSMINGFRNLGNMEAALDMHRKMIND--- 648 (850)
Q Consensus 597 ~g~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 648 (850)
.|+ +++|...+++.... +..+ ...++..+...+...|++++|+..++++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 66666666555432 1111 2345677777888888888888888887654
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--
Q 043440 649 -GI-PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGI-EPD----IITYTVLINGLYGKGQLENARKIFDEMNRKC-- 719 (850)
Q Consensus 649 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 719 (850)
+. .....++..++..+...|++++|...+++.++... .++ ..++..+...+...|++++|...++++.+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 10 11123777888888888999999888888775210 011 4467788888999999999999998886531
Q ss_pred --CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 720 --LTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 720 --~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
..+ ...++..++.+|...|++++|...++++++.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 001 2456888999999999999999999998874
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=3.4e-12 Score=118.76 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043440 95 DSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMR 174 (850)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (850)
+..+|..|+..|...|++++|+..|+++++.++. +..++..++.+|.+.|++++|...+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 3444555555555555555555555555444433 3344444444444444444444444444333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHH
Q 043440 175 ACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEA 254 (850)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 254 (850)
.+. +...+..+...+...++++.|...+.++.+..+....++..++.+|.+.|++++|
T Consensus 69 ---------------------~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 69 ---------------------DTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp ---------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhH
Confidence 221 3333334444444444444444444444443222222444444444455555555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 255 FRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
+..|++.++..+ .+..+|..++.+|.+.|++++|++.|++.++
T Consensus 127 ~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 127 IEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555544444322 2344444555555555555555555555444
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.6e-11 Score=124.87 Aligned_cols=218 Identities=8% Similarity=0.055 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 043440 218 KVACGLVKEMRDMGRVPSRVYTNLIGACV-------KHGNL-------TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ 283 (850)
Q Consensus 218 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 283 (850)
++|...|++++...+....+|..++..+. +.|++ ++|+.+|++.++.-.+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 46666666666644333336666666554 34664 67777777776621223556677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHH
Q 043440 284 GDLSSALELLDKIKEDGLSPN-KV-TFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL-KAQLLEEAY 360 (850)
Q Consensus 284 g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 360 (850)
|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|+.+|++.++.. +++...|...+.... ..|++++|+
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777663 332 22 66667777777777777777777776643 223333333322221 257777777
Q ss_pred HHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 361 KLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG-VRP--SVVSYNNMILAHCTVKNMDEAYSVFSEMLE 437 (850)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (850)
++|+++++..|.+...|..++..+.+.|++++|+.+|++.+... ..| ....|..++....+.|+.+.|..+++++.+
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777666667777777777777777777777777777642 233 234566666666666777777777766665
Q ss_pred C
Q 043440 438 K 438 (850)
Q Consensus 438 ~ 438 (850)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=5.6e-12 Score=133.00 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=171.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----CcCHhhHH
Q 043440 520 IIDGFVKEDDMISALTVYREMHES----GLSP-NVVTYTILINGFCRKNEIDLALKMRNEMMNEG--L----QLDATAYG 588 (850)
Q Consensus 520 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~~~ 588 (850)
....+...|++++|...|++..+. +-++ ...++..+...|...|++++|+..+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 456677888888888888888764 1111 23567788888888899999998888877531 1 11235677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 043440 589 SLINGFCRRRDMESACKLFAELLEVGLS-PN----TVVYNSMINGFRNLGNMEAALDMHRKMIND----GI-PCDLQTYT 658 (850)
Q Consensus 589 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 658 (850)
.+...|...|++++|...|++..+.... ++ ..++..++..|...|++++|+..|++.++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999888754111 11 247788899999999999999999998872 22 44567889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043440 659 TLIAGLLEEGKLLTASNLYSEMLSK----GIEPDIITYTVLINGLYGKGQ---LENARKIFDEMNRKCLTP-NVFIFNTL 730 (850)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l 730 (850)
.++..+...|++++|...+++.++. +-+.....+..+...+...|+ +++|+.++++.. ..| ...++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 9999999999999999999998762 111112245677888888898 888888887762 223 34568889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043440 731 IAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 731 ~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
+..|...|++++|...+++.++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=2e-12 Score=139.73 Aligned_cols=214 Identities=13% Similarity=0.025 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 182 TEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNL-KVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDE 260 (850)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 260 (850)
++++...++...... ..+...+..+...+...|++ ++|+..|+++++..+....++..++.+|.+.|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666655443 23667777777888888888 8888888888775543333788888888888888888888888
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CChhH
Q 043440 261 MMSCGKPMNLVVATSLMKGYYKQ---------GDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTN--------GKVEK 323 (850)
Q Consensus 261 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 323 (850)
.++.. |+..++..+...|... |++++|+..|++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 87754 4567777788888877 88888888888887753 33567777777777777 77888
Q ss_pred HHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 324 GYELYTQMKHMGIK--PSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQK 399 (850)
Q Consensus 324 A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 399 (850)
|+..|++.++.... .+...+..+...|...|++++|++.|+++++..|.+..++..+...+...|++++|+..+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888887775310 35677777778888888888888888888887777777788888888887877777765543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=1.5e-12 Score=140.64 Aligned_cols=211 Identities=12% Similarity=-0.022 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 217 LKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNL-TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDK 295 (850)
Q Consensus 217 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (850)
+++++..+++.....+.....+..++.++...|++ ++|+..|++.++..+ .+..+|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666666665553332222777777778888888 888888877777543 2567777777777778888888888877
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--------CCHHH
Q 043440 296 IKEDGLSPNKVTFAVLIEGCCTN---------GKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA--------QLLEE 358 (850)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 358 (850)
..+. .|+...+..+...+... |++++|+..|+++++.. +.+...+..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 7773 45566777777777777 77777777777776653 23456666666666666 66777
Q ss_pred HHHHHHHHHHCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043440 359 AYKLFDEAVDSGI---ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVF 432 (850)
Q Consensus 359 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 432 (850)
|+..|+++++..| .+..+|..++..|...|++++|+..|++..+..+. +...+..+...+...|++++|.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777776666 66667777777777777777777777776665322 3445555666666666666665544
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=4.4e-12 Score=133.83 Aligned_cols=232 Identities=7% Similarity=-0.040 Sum_probs=103.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHC----CCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCcHHHHHH
Q 043440 208 IQALCRKPNLKVACGLVKEMRDM----GRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSCGK------PMNLVVATS 275 (850)
Q Consensus 208 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~ 275 (850)
...+...|++++|+..|+++.+. +..+.. ++..++.+|...|++++|...+++.++... +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34444555666666666555543 111111 455555555555555555555555443100 001234445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 043440 276 LMKGYYKQGDLSSALELLDKIKEDGLS-PN----KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGF 350 (850)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (850)
+...|...|++++|+..|++..+.... ++ ..++..++..|...|++++|+..+++..+..-..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~------------ 257 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES------------ 257 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh------------
Confidence 555555555555555555554331000 00 1234444444444444444444444443310000
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHhcCC-
Q 043440 351 LKAQLLEEAYKLFDEAVDSG-IANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG----VRPSVVSYNNMILAHCTVKN- 424 (850)
Q Consensus 351 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~- 424 (850)
.. +....++..++..|.+.|++++|...+++..+.. .+.....+..+...+...|+
T Consensus 258 ------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 258 ------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp ------------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred ------------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 22 2233344444444445555555554444443320 00011123444455555555
Q ss_pred --HHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 425 --MDEAYSVFSEMLEKRVTP-NVVTYSVLIDGYFKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 425 --~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (850)
+++|..++++. +..| ....+..+...|.+.|++++|...+++..+
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555443 1111 223455566666666666666666666543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=7.1e-13 Score=135.49 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIER-------DIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLK----- 160 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 160 (850)
+....++..++..|...|++++|+..|+++.+. .......++..++.+|...|++++|..+|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 344567888999999999999999999988763 23334566788888888899999998888877653
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-
Q 043440 161 -G-LGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKAL------GV-KLDARAYRMVIQALCRKPNLKVACGLVKEMRDM- 230 (850)
Q Consensus 161 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 230 (850)
+ ......++..+...+...|++++|...|+++.+. +. ......+..+...+...|++++|+.+++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1123445666666777777777777777766543 11 112334555566666666666666666665543
Q ss_pred -----CCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 231 -----GRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 231 -----~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
+..|.. ++..++.+|...|++++|...++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 455555556666666666655555543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=9.4e-13 Score=134.58 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-
Q 043440 131 LRSMNSVLKALVRRNLIDEAKEFYNKMNLK-------GLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKAL------G- 196 (850)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~- 196 (850)
..++..++..+...|++++|..+|+++.+. .......++..+...+...|++++|...|+++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455677777777777887777777776652 11223344555556666666666666666655432 1
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 043440 197 VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSL 276 (850)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 276 (850)
......++..+...+...|++++|...++++.+... .......+....++..+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------------------------~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE---------------------------KVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH---------------------------HHHCTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH---------------------------HhcCCCChHHHHHHHHH
Confidence 111223344445555555555555555554443200 00000011122334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCH--
Q 043440 277 MKGYYKQGDLSSALELLDKIKED------GLSP-NKVTFAVLIEGCCTNGKVEKGYELYTQMKHM-------GIKPSV-- 340 (850)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-- 340 (850)
...+...|++++|+..|+++.+. +..| ...++..+...+...|++++|...++++.+. ...+..
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 44455555555555555444332 1111 1223444455555555555555555554431 011111
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 341 -----FIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 341 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
..+..+...+...+.+.+|...+.......+.+..++..++..|.+.|++++|...|++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111122223334444555555555554445556666666666666776666666666554
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=8.5e-11 Score=123.56 Aligned_cols=230 Identities=10% Similarity=0.029 Sum_probs=170.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---C-cCHhhH
Q 043440 519 SIIDGFVKEDDMISALTVYREMHESGL-SP----NVVTYTILINGFCRKNEIDLALKMRNEMMNEG--L---Q-LDATAY 587 (850)
Q Consensus 519 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~-~~~~~~ 587 (850)
.....+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556788899999999888875411 12 24567778888889999999999888876521 1 1 124567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 043440 588 GSLINGFCRRRDMESACKLFAELLEV----GLSP-NTVVYNSMINGFRNLGNMEAALDMHRKMIN-----DGIPCDLQTY 657 (850)
Q Consensus 588 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 657 (850)
+.+...|...|++++|.+.|.+..+. +..+ ...++..++.+|...|++++|+..|++.++ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888899999999999999888753 1111 234677888999999999999999999887 43 4446788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCC-CHHHHHH
Q 043440 658 TTLIAGLLEEGKLLTASNLYSEMLSKG----IEPDIITYTVLINGLYGKGQ---LENARKIFDEMNRKCLTP-NVFIFNT 729 (850)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~ 729 (850)
..++..+.+.|++++|...+++.++.. .+.....+..+...+...|+ +++|+..+++.. ..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHH
Confidence 899999999999999999999988731 11123355666667777888 888888887732 222 3456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043440 730 LIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
++..|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=7.7e-11 Score=123.92 Aligned_cols=231 Identities=9% Similarity=-0.047 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CC-CHH
Q 043440 238 YTNLIGACVKHGNLTEAFRLKDEMMSCGK----P-MNLVVATSLMKGYYKQGDLSSALELLDKIKEDGL-----SP-NKV 306 (850)
Q Consensus 238 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~ 306 (850)
+...+..+...|++++|+..|++..+... + ....++..+...|...|++++|...+++..+... .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 44456667777888888888777765311 1 1234667777777788888888877777654210 11 134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCHhH
Q 043440 307 TFAVLIEGCCTNGKVEKGYELYTQMKHM----GIKP-SVFIVNSLLCGFLKAQLLEEAYKLFDEAVD-----SGIANVFT 376 (850)
Q Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 376 (850)
+++.+...|...|++++|.+.|.+.++. +-++ ...++..+...|...|++++|+..|+++++ ..+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 5667777777888888888877776552 1111 124566677777777777777777777776 55544667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC-hhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHhHH
Q 043440 377 YNDLLAWLCKRGKVSEACNLWQKMVSSGVR---PS-VVSYNNMILAHCTVKN---MDEAYSVFSEMLEKRVTP-NVVTYS 448 (850)
Q Consensus 377 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~ 448 (850)
+..++..+.+.|++++|...+++..+.... +. ...+..+...+...++ +.+|+..++.. +..| ....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 777777777777777777777777653211 11 1233444444555555 55555555541 1111 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 043440 449 VLIDGYFKQGDAERAFDVLDQME 471 (850)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~ 471 (850)
.+...|.+.|++++|...|++..
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666666666554
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=7.7e-11 Score=113.92 Aligned_cols=207 Identities=10% Similarity=0.035 Sum_probs=154.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043440 546 SPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSM 625 (850)
Q Consensus 546 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 625 (850)
+.++..+......+...|++++|+..|++.++...+++...+..+..++...|++++|+..|++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34667888888888999999999999999888765467777777888899999999999999998886543 56788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 043440 626 INGFRNLGNMEAALDMHRKMINDGIPCDL-------QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPD---IITYTVL 695 (850)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~l 695 (850)
+.+|...|++++|+..|+++++.. |.+. .+|..+...+...|++++|++.++++++. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 888999999999999999988874 5555 55778888888889999999999998874 454 4567777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043440 696 INGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDIL 765 (850)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 765 (850)
..++... +..+++++...+ ..+...|.... ....|.+++|+..+++.++..+. +......+
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7777544 445566666542 22444444433 34556789999999999986543 44444333
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=1.7e-10 Score=121.19 Aligned_cols=164 Identities=10% Similarity=-0.029 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH----HHH
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMIERDIIPLL----RSMNSVLKALVRRNLIDEAKEFYNKMNLKGLG-VDS----VTI 169 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~ 169 (850)
...+...+...|++++|+..+++++...+..+. .+++.++..+...|++++|...+++....... ++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 445556677888888888888887765543332 24666777788888888888888776543111 111 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC----Ch-h
Q 043440 170 RVMMRACLKEDTTEEAEKYFRDAKAL----GVK--L-DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVP----SR-V 237 (850)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~-~ 237 (850)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... .. +
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 44555566666666666666655432 111 1 12234445555555566666666655554432211 01 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 238 YTNLIGACVKHGNLTEAFRLKDEMM 262 (850)
Q Consensus 238 ~~~l~~~~~~~g~~~~A~~~~~~~~ 262 (850)
+..++.++...|++++|...+++..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=2.3e-10 Score=120.24 Aligned_cols=59 Identities=7% Similarity=-0.120 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043440 135 NSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSV----TIRVMMRACLKEDTTEEAEKYFRDAK 193 (850)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (850)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334445555666666666666655443222221 23334444455555555555555543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=3.1e-11 Score=135.43 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=113.6
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 583 DATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIA 662 (850)
Q Consensus 583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 662 (850)
+..+++.|...|.+.|++++|++.|++.++..+. +..++..++.+|.+.|++++|++.|+++++.+ |.+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456666777777777777777777777665433 46667777777777777777777777777664 556667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 043440 663 GLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQ 741 (850)
Q Consensus 663 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 741 (850)
+|.+.|++++|++.|+++++.. +-+...|..+..+|.+.|++++|++.|+++++. .| +..+|..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 7777777777777777777632 224556777777777777777777777777763 34 5666777777777777777
Q ss_pred HHHHHHHHHHH
Q 043440 742 EAFRLHNEMLD 752 (850)
Q Consensus 742 ~A~~~~~~~~~ 752 (850)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=5.2e-11 Score=133.55 Aligned_cols=163 Identities=17% Similarity=0.083 Sum_probs=120.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC 316 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (850)
+++.|+.+|.+.|++++|++.|++.++..+ .+..+|+.+..+|.+.|++++|+..|++.++.. +-+..+|..+..++.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 677777777777777777777777776542 256677777777777777777777777777642 224667777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043440 317 TNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNL 396 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (850)
+.|++++|++.|++.++.. +.+...+..+...|.+.|++++|++.|+++++..|.+..++..++..|...|++++|.+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 7777777777777777653 234667777777888888888888888888887777788888888888888888888877
Q ss_pred HHHHHh
Q 043440 397 WQKMVS 402 (850)
Q Consensus 397 ~~~~~~ 402 (850)
++++.+
T Consensus 168 ~~kal~ 173 (723)
T 4gyw_A 168 MKKLVS 173 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=1.2e-10 Score=108.34 Aligned_cols=166 Identities=13% Similarity=0.082 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043440 585 TAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGL 664 (850)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 664 (850)
..+..+...+...|++++|...++++.+... .+..++..++..+...|++++|...++++.+.. +.+..++..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4455666677777777777777777765432 356677777777888888888888888877764 55677777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 665 LEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAF 744 (850)
Q Consensus 665 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 744 (850)
...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++.+.. +.+..++..++.+|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887774 24466777788888888888888888888887753 236777888888888888888888
Q ss_pred HHHHHHHHCC
Q 043440 745 RLHNEMLDKG 754 (850)
Q Consensus 745 ~~~~~~~~~g 754 (850)
..++++++..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 8888877643
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=2e-10 Score=110.96 Aligned_cols=205 Identities=12% Similarity=-0.016 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 043440 165 DSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGA 244 (850)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 244 (850)
|+..+......+...|++++|...|+...+..+.++...+..+...+...|++++|+..|+++++..+....++..++.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 55677777777788888888888888877765535666666677777778888888888888777544322277777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 043440 245 CVKHGNLTEAFRLKDEMMSCGKPMNL-------VVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN---KVTFAVLIEG 314 (850)
Q Consensus 245 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 314 (850)
|...|++++|+..+++.++..+. +. .+|..+...+.+.|++++|++.|++..+. .|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 88888888888888777765432 34 44666777777777777777777777663 343 4456666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHH
Q 043440 315 CCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDL 380 (850)
Q Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 380 (850)
+... +...++.+...+ ..+...+.... ....+.+++|+..|+++++..|.+..+...+
T Consensus 163 ~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 6443 334445554443 12233332222 2234456677777777776666555554444
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2e-10 Score=106.78 Aligned_cols=164 Identities=18% Similarity=0.118 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC 316 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (850)
.+..++..+...|++++|...++++.+..+ .+..++..++..+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Confidence 455556666666666666666666554422 24555666666666666666666666666554 2234555556666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043440 317 TNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNL 396 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (850)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+.+..++..++..+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666665542 234555555666666666666666666666666555566666666666666666666666
Q ss_pred HHHHHhC
Q 043440 397 WQKMVSS 403 (850)
Q Consensus 397 ~~~~~~~ 403 (850)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665543
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=2.3e-10 Score=115.11 Aligned_cols=207 Identities=12% Similarity=0.075 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHhhHHHHHHHHHccCCHHHH
Q 043440 529 DMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNE----GLQL-DATAYGSLINGFCRRRDMESA 603 (850)
Q Consensus 529 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A 603 (850)
++++|...|++. +..|...|++++|...|.+..+. |.++ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455667777777777666542 1111 145667777777777788887
Q ss_pred HHHHHHHHHcCCCC-C----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 043440 604 CKLFAELLEVGLSP-N----TVVYNSMINGFRNL-GNMEAALDMHRKMINDGIP-CD----LQTYTTLIAGLLEEGKLLT 672 (850)
Q Consensus 604 ~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 672 (850)
+..|++.++..... + ..+++.+..+|... |++++|+..|++.++.... .+ ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777776531110 1 34677888888885 9999999999988765200 01 3568888889999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcC
Q 043440 673 ASNLYSEMLSKGIEPDI------ITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNV------FIFNTLIAGYF--KEG 738 (850)
Q Consensus 673 A~~~~~~~~~~g~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g 738 (850)
|+..|+++++....... ..|..+..++...|++++|+..|++.++. .|+. ..+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999884322211 15677788888999999999999998873 3431 13445566664 457
Q ss_pred CHHHHHHHHHHHHH
Q 043440 739 NLQEAFRLHNEMLD 752 (850)
Q Consensus 739 ~~~~A~~~~~~~~~ 752 (850)
++++|+..|+++..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 78899988887754
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.5e-10 Score=116.05 Aligned_cols=97 Identities=20% Similarity=0.100 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSC------G-KPMNLVVATSLMKGYYKQGDLSSALELLDKIKED------GLSP 303 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~ 303 (850)
++..++.+|...|++++|...+++++.. . .+....++..+...|...|++++|...|+++.+. +..|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444444455555555555444444332 0 1112334555555555555555555555555442 0011
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 304 -NKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 304 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
...++..+...+...|++++|...++++.+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223445555555555555555555555543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=5e-09 Score=102.29 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=82.3
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 220 ACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGK-PMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 220 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
|+..|++.+..+...+.++..++.++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444443311111444555555555555555555555544332 12344455555555555555555555555544
Q ss_pred cCCCC-----CHHHHHHHHHH--HHhcC--ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 299 DGLSP-----NKVTFAVLIEG--CCTNG--KVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDS 369 (850)
Q Consensus 299 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (850)
..| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 233 12333333333 22222 555555555555443 233222223333455555555555555544332
Q ss_pred ----------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 370 ----------GIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 370 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.|.|+.+...+|......|+ +|.+++.++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 23444455444444444454 555555555554
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2e-10 Score=115.29 Aligned_cols=161 Identities=19% Similarity=0.135 Sum_probs=76.9
Q ss_pred cCCChhHHHHHHHHHHHC-----CCC-CCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCcHHHHHHHH
Q 043440 213 RKPNLKVACGLVKEMRDM-----GRV-PSR--VYTNLIGACVKHGNLTEAFRLKDEMMSC------GK-PMNLVVATSLM 277 (850)
Q Consensus 213 ~~g~~~~A~~~~~~~~~~-----~~~-~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li 277 (850)
..|++++|+.+|++.++. +.. |.. ++..++.+|...|++++|+..++++++. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777665542 011 111 4555555555555555555555555432 11 11233444445
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCH
Q 043440 278 KGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG-IKPSVFIVNSLLCGFLKAQLL 356 (850)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 356 (850)
..|...|++++|.+.|++..+... .... . .+....++..+...|...|++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~-~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLG-KFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHC-TTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHH----------------------------HHcC-CCChHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555544433200 0000 0 011133444444555555555
Q ss_pred HHHHHHHHHHHHC--------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 357 EEAYKLFDEAVDS--------GIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 357 ~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
++|+..|+++++. .+....++..++..|...|++++|+..++++.+
T Consensus 144 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555443 223344556666666666666666666666554
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=1.3e-09 Score=109.47 Aligned_cols=168 Identities=10% Similarity=-0.088 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 101 YLLRSYVRADRINDAVDCCNGMIER----DIIPL-LRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRA 175 (850)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (850)
..+..|...|++++|+..|.++.+. +-.+. ..+++.++.+|.+.|++++|+..|++..+...
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~------------- 108 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT------------- 108 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------
Confidence 3345566677777777777766543 11111 34566666666667777777666665543210
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHHCCCCCC-----h-hHHHHHHHHHhc
Q 043440 176 CLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRK-PNLKVACGLVKEMRDMGRVPS-----R-VYTNLIGACVKH 248 (850)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~-----~-~~~~l~~~~~~~ 248 (850)
..|++.. -..+++.+...|... |++++|+..|++.++..+... . ++..++.++.+.
T Consensus 109 --~~g~~~~---------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 109 --HRGQFRR---------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp --HTTCHHH---------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred --HcCCHHH---------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 0010000 012344444444443 555555555555444221110 1 344555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 249 GNLTEAFRLKDEMMSCGKPMNL------VVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 249 g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
|++++|+..|++.++..+.... ..+..++.++...|++++|+..|++..+
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555543222111 1344455555555555555555555544
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=9.4e-09 Score=100.35 Aligned_cols=250 Identities=9% Similarity=0.025 Sum_probs=173.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043440 103 LRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTT 182 (850)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (850)
++-..-.|.+..++.-..+ ..........-.+.++|...|+++.. ....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 4556678888888874433 22232333444466888888887642 122344434444433 33322
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 183 EEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR--VYTNLIGACVKHGNLTEAFRLKDE 260 (850)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 260 (850)
|...|++....+ .++..++..+..++...|++++|++.+.+.+..++.++. .+..++.++.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888887665 345666678888999999999999999999887663344 888999999999999999999999
Q ss_pred HHhCCCCC-----cHHHHHHHHHHH--HhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 261 MMSCGKPM-----NLVVATSLMKGY--YKQG--DLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQM 331 (850)
Q Consensus 261 ~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (850)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9774 34 345556666553 3334 899999999998764 455333344455888999999999999976
Q ss_pred HHCC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhH
Q 043440 332 KHMG---------IKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFT 376 (850)
Q Consensus 332 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (850)
.+.. -+.+..+...++......|+ +|.++++++.+..|.++.+
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 6531 03356666566666666776 8899999999998866654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=1.1e-09 Score=108.12 Aligned_cols=214 Identities=8% Similarity=-0.047 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC-HHH
Q 043440 93 DLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPL--LRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLG-VD-SVT 168 (850)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~ 168 (850)
+.+...+..++..+.+.|++++|+..|++++...+... ...+..++.+|.+.|++++|...|+++.+..+. |. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35667788888999999999999999999988765422 456788888999999999999999998876432 22 455
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHH
Q 043440 169 IRVMMRACLK--------EDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTN 240 (850)
Q Consensus 169 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 240 (850)
+..+..++.. .|++++|...|++++...+. +........ .+..+... ....+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~---~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK---LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH---HHHHHHH
Confidence 6677777777 88888888888887765432 222221110 00000000 0002456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCC--HH
Q 043440 241 LIGACVKHGNLTEAFRLKDEMMSCGKPM--NLVVATSLMKGYYKQ----------GDLSSALELLDKIKEDGLSPN--KV 306 (850)
Q Consensus 241 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~~ 306 (850)
++.+|.+.|++++|+..|+++++..+.. ....+..++.+|.+. |++++|...|+++.+..+... ..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 6777777777777777777776643221 234566666666655 677777777777776422211 22
Q ss_pred HHHHHHHHHHhcCChhHH
Q 043440 307 TFAVLIEGCCTNGKVEKG 324 (850)
Q Consensus 307 ~~~~l~~~~~~~g~~~~A 324 (850)
+...+...+.+.++++++
T Consensus 234 a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 234 AEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 344444455555544433
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.3e-09 Score=101.42 Aligned_cols=133 Identities=10% Similarity=0.107 Sum_probs=69.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043440 625 MINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQ 704 (850)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 704 (850)
++.+|.+.|++++|+..|+++++.+ |.+..++..+..++...|++++|+..|+++++.. +.+...|..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5555666666666666666666554 4455566666666666666666666666666531 2234455555555544433
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043440 705 --LENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYD 763 (850)
Q Consensus 705 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 763 (850)
.+.+...+++... ..|....+..++.++...|++++|+..|+++++ ..|+.....
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 2334444444432 122223344455555566666666666666665 334444333
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=1.3e-09 Score=103.16 Aligned_cols=178 Identities=14% Similarity=0.037 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHH----------------HHHHHHccCCHHHHHHHHHHHH
Q 043440 548 NVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGS----------------LINGFCRRRDMESACKLFAELL 611 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~ 611 (850)
+...+......+...|++++|+..|++.++..+. +...|.. +..+|.+.|++++|+..|++.+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445556667788999999999999999986432 4566777 8899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCH
Q 043440 612 EVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGK--LLTASNLYSEMLSKGIEPDI 689 (850)
Q Consensus 612 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~~~~ 689 (850)
+..+. +...+..++.+|...|++++|+..|+++++.+ |.+..++..+...|...|. .+.+...++.... ..|..
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 88644 78899999999999999999999999999986 7788999999998876654 3455666666542 23333
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043440 690 ITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIA 732 (850)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 732 (850)
..+..+..++...|++++|+..|++.++ +.|+......+.+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3455566677788999999999999998 5688766555544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.4e-09 Score=107.51 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHHHHHHH
Q 043440 203 AYRMVIQALCRKPNLKVACGLVKEMRDMGRVPS--R-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKP--MNLVVATSLM 277 (850)
Q Consensus 203 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li 277 (850)
.+......+.+.|++++|+..|+++++..+... . ++..++.+|.+.|++++|+..|+++++..+. ....++..+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 333344444444444444444444444333221 1 4444444444444444444444444442210 1123344444
Q ss_pred HHHHh--------cCChhHHHHHHHHHHH
Q 043440 278 KGYYK--------QGDLSSALELLDKIKE 298 (850)
Q Consensus 278 ~~~~~--------~g~~~~A~~~~~~~~~ 298 (850)
.++.+ .|++++|+..|+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 44444 4444445444444444
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=3.6e-08 Score=97.60 Aligned_cols=219 Identities=10% Similarity=-0.001 Sum_probs=172.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHH----Hcc---CC
Q 043440 529 DMISALTVYREMHESGLSPNVVTYTILINGFCRKN--EIDLALKMRNEMMNEGLQLDATAYGSLINGF----CRR---RD 599 (850)
Q Consensus 529 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 599 (850)
..++|+..++.++..+ |.+...|+.-...+...+ +++++++.++.++..+++ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3467888888877775 556666777777777777 888888888888876544 666676655555 444 78
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 043440 600 MESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNME--AALDMHRKMINDGIPCDLQTYTTLIAGLLEEGK------LL 671 (850)
Q Consensus 600 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 671 (850)
+++++.+++.+.+..++ +..+|+.-.....+.|.++ ++++.++++++.+ +.|..+|+.-...+...|. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 89999999999987655 8888888888888888888 9999999999886 6788888888777777776 89
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 672 TASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN-ARKIFDEMNRKC--LTPNVFIFNTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 672 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (850)
++++.+++++... +-|...|+.+...+.+.|+..+ ...+++++.+.+ -..++.++..++.+|.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999853 5588899999999988888544 556777766532 12378889999999999999999999999
Q ss_pred HHHH
Q 043440 749 EMLD 752 (850)
Q Consensus 749 ~~~~ 752 (850)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=7.6e-08 Score=103.54 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043440 620 VVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEG-KLLTASNLYSEMLSKGIEPDIITYTVLING 698 (850)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 698 (850)
..|...+....+.+..+.|..+|+++ ... +.+...|...+..-...+ +.+.|..+|+..++. .+.+...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45666666666777888899999888 321 234445543333222233 689999999998875 33345566677777
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 699 LYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
..+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999973 2578898988888888999999998888874
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=9.7e-08 Score=102.71 Aligned_cols=381 Identities=10% Similarity=0.017 Sum_probs=189.0
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCC-HHHHH
Q 043440 317 TNG-KVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGK-VSEAC 394 (850)
Q Consensus 317 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 394 (850)
+.| +++.|+.+|+.++.. -|. |+++.+..+|++.+..- |+...|...+....+.++ .+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~-ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKS-YNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCchHHHHH
Confidence 445 377777777777653 232 77888888888888754 477788877777777663 34456
Q ss_pred HHHHHHHhC-CCCC-ChhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCHHHHHH
Q 043440 395 NLWQKMVSS-GVRP-SVVSYNNMILAHC----TVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFK---QGDAERAFD 465 (850)
Q Consensus 395 ~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 465 (850)
.+|+..+.. |..| +...|...+..+. ..++.+.+..+|+..+.. ++.. +..+...|.. ......+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHH
Confidence 667766653 4333 4456666555433 235566777777777763 2111 1112221111 111111222
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC--CC-----hHHHHHHHH
Q 043440 466 VLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKE--DD-----MISALTVYR 538 (850)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~A~~~~~ 538 (850)
++.+.. +.+..|..+++.+...-...+...|...++--... +- .+.+..+|+
T Consensus 145 ~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 211110 12223333333332210001222333332221111 00 123344555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 043440 539 EMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPN 618 (850)
Q Consensus 539 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 618 (850)
+++... +.+...|...+..+.+.|+.+.|..++++.+.. +.+...|.. |....+.++ .++.+.+.
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~---~~~~l~~~----- 268 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA---VYGDLKRK----- 268 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH---HHHHHHHH-----
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH---HHHHHHHH-----
Confidence 554432 344455555555555555555555555555554 222222211 111100000 01111110
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043440 619 TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLING 698 (850)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 698 (850)
+. ....+.+ .. ... ......|...+....+.+..+.|..+|+++ +. ...+..+|...+..
T Consensus 269 ----------~~-~~~~~~~-----~~-~~~-~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~l 328 (493)
T 2uy1_A 269 ----------YS-MGEAESA-----EK-VFS-KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFI 328 (493)
T ss_dssp ----------TC-----------------CH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHH
T ss_pred ----------HH-hhccchh-----hh-hcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHH
Confidence 00 0000000 00 000 112345667777777788899999999999 32 12344455433333
Q ss_pred HHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCchHH
Q 043440 699 LYGKG-QLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWAR 777 (850)
Q Consensus 699 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 777 (850)
-...| +.+.|.++|+..++.. +.++..|...++...+.|+.+.|..+|+++. .....|...++.-...|+.+.
T Consensus 329 E~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 329 EYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHH
Confidence 33334 6999999999998853 2356667778888888999999999999972 256677777776666688776
Q ss_pred hhc
Q 043440 778 KKE 780 (850)
Q Consensus 778 a~~ 780 (850)
+..
T Consensus 403 ~r~ 405 (493)
T 2uy1_A 403 FRE 405 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=4.5e-09 Score=91.44 Aligned_cols=131 Identities=17% Similarity=0.286 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043440 621 VYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLY 700 (850)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 700 (850)
.+..++..+...|++++|+.+|+++.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566677777777777777777777654 4566677777777777788888888887777642 345667777777888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 701 GKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
..|++++|.+.++++.+.. +.+..++..++.++...|++++|...++++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888877642 2356777788888888888888888888877643
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=6.2e-08 Score=95.92 Aligned_cols=217 Identities=10% Similarity=0.002 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH----Hhc---CChhH
Q 043440 218 KVACGLVKEMRDMGRVPSRVYTNLIGACVKHG--NLTEAFRLKDEMMSCGKPMNLVVATSLMKGY----YKQ---GDLSS 288 (850)
Q Consensus 218 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~ 288 (850)
++|+..+..++..++....+|+.-..++...| ++++++..++.++...+. +..+|+.-...+ .+. +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45555555555543333335555555555555 555555555555554322 344444433333 333 45555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC------HHHHH
Q 043440 289 ALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVE--KGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQL------LEEAY 360 (850)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~ 360 (850)
++.+++++.+.. +.|..+|+...-.+.+.|.++ ++++.++.+++... .|...|+.....+.+.+. +++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666665555542 224555555555555555555 55555555555432 244444444444444443 66777
Q ss_pred HHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 361 KLFDEAVDSGIANVFTYNDLLAWLCKRGKVSE-ACNLWQKMVSSG--VRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLE 437 (850)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (850)
+.+++++...|.|..+|+.+...+.+.|+..+ ...+..++.+.+ ...+...+..+...+.+.|+.++|.++++.+.+
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777777777777777777777766666333 334444444322 112445555566666666666666666666654
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=4.1e-10 Score=99.97 Aligned_cols=138 Identities=8% Similarity=-0.096 Sum_probs=65.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043440 629 FRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENA 708 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 708 (850)
+...|++++|+..+++..... |.+...+..+...|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 334445555555555544432 2223344445555555555555555555555421 22344555555555555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHhhhhc
Q 043440 709 RKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRL-HNEMLDKGLVPDDTTYDILVNGKSR 771 (850)
Q Consensus 709 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~~~~~~~l~~~~~~ 771 (850)
+..|++.++. .| +..+|..++.+|.+.|++++|.+. ++++++..+. ++..|......+..
T Consensus 85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 5555555552 23 345555555555555555544433 3455543332 34444444333333
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.5e-08 Score=96.00 Aligned_cols=177 Identities=12% Similarity=0.018 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 043440 567 LALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLG----NMEAALDMH 642 (850)
Q Consensus 567 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 642 (850)
+|+..|++..+.| ++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665543 55666666666666777777777777776654 55566666666666 5 677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 043440 643 RKMINDGIPCDLQTYTTLIAGLLE----EGKLLTASNLYSEMLSKGIE-PDIITYTVLINGLYG----KGQLENARKIFD 713 (850)
Q Consensus 643 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 713 (850)
++..+.| +..++..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55666667776665 67777777777777765411 015566777777776 677888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 043440 714 EMNRKCLTPNVFIFNTLIAGYFKE-G-----NLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 714 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 755 (850)
+..+. .++..++..|...|... | ++++|+.+|++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87774 23555677777777653 3 78888888888877664
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1e-08 Score=98.41 Aligned_cols=189 Identities=6% Similarity=-0.050 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CH-HHHH
Q 043440 95 DSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPL--LRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGV-DS-VTIR 170 (850)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~ 170 (850)
+...+..++..+.+.|++++|+..|++++...+... ...+..++.+|.+.|++++|+..|+++.+..+.. .. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345677788899999999999999999988665432 3567888999999999999999999998774431 11 2455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh-------------
Q 043440 171 VMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRV------------- 237 (850)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------- 237 (850)
.+..++...+.. .+ ..|..+...+...|++++|+..|+++++..|....+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 555555442210 00 011122223334455555555555555544333221
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043440 238 ----YTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN--LVVATSLMKGYYKQGDLSSALELLDKIKEDG 300 (850)
Q Consensus 238 ----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 300 (850)
...++..|.+.|++++|+..|+++++..+... ..++..++.+|.+.|++++|++.++.+...+
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 24677889999999999999999988643321 2568889999999999999999999988853
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=1.7e-09 Score=122.32 Aligned_cols=174 Identities=10% Similarity=-0.043 Sum_probs=138.1
Q ss_pred HcCCChhHHHHHHHHHH--------HCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 043440 212 CRKPNLKVACGLVKEMR--------DMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ 283 (850)
Q Consensus 212 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 283 (850)
...|++++|++.+++++ +..+....++..++.++...|++++|+..|+++++.++ .+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67889999999999988 54333333888899999999999999999999887643 3778888889999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 043440 284 GDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLF 363 (850)
Q Consensus 284 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (850)
|++++|+..|++..+..+ .+...|..+..++.+.|++++ ++.|+++++.+ +.+...+..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999888532 256778888888888999988 88888888764 335677888888888888888888888
Q ss_pred HHHHHCCCCCHhHHHHHHHHHHhcCC
Q 043440 364 DEAVDSGIANVFTYNDLLAWLCKRGK 389 (850)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 389 (850)
+++++..|.+..++..++.++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888778888888888766554
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=7.7e-10 Score=98.20 Aligned_cols=144 Identities=10% Similarity=-0.010 Sum_probs=73.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043440 242 IGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKV 321 (850)
Q Consensus 242 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (850)
+.++...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344444555555555555554321 1123344455555555555555555555555532 22445555555555555555
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCHhHHHHHHHHHHhcC
Q 043440 322 EKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKL-FDEAVDSGIANVFTYNDLLAWLCKRG 388 (850)
Q Consensus 322 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 388 (850)
++|+..|++.++.. +.+..++..+...|.+.|++++|.+. ++++++..|.++.+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55555555555542 12344555555555555555544433 35555555555555555555555544
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=1.5e-09 Score=122.72 Aligned_cols=173 Identities=13% Similarity=-0.011 Sum_probs=114.3
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 043440 142 VRRNLIDEAKEFYNKMN--------LKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR 213 (850)
Q Consensus 142 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 213 (850)
...|++++|+..|++.. +.. +.+...+..+...+...|++++|...|+++.+..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56677777777777766 332 224566667777777777777777777777765433 56677777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 214 KPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELL 293 (850)
Q Consensus 214 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (850)
.|++++|+..|+++++..+....++..++.+|.+.|++++ +..|+++++.++ .+..+|..+..++.+.|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777777554444477777777777777777 777777776543 25667777777777777777777777
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 043440 294 DKIKEDGLSPN-KVTFAVLIEGCCTNGK 320 (850)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 320 (850)
+++.+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 777653 333 4456666666655443
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=1.2e-08 Score=88.56 Aligned_cols=128 Identities=22% Similarity=0.264 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 043440 273 ATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLK 352 (850)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (850)
|..++..+...|++++|..+|+++.+.+ +.+...+..++..+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444445555555555555555554432 1234444445555555555555555555554432 2234444455555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 353 AQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 353 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
.|++++|.+.++++.+..+.+..++..++..+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555555554555555555555556666666655555554
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=1.9e-08 Score=96.50 Aligned_cols=58 Identities=2% Similarity=-0.160 Sum_probs=35.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANV---FTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
+...|.+.|++++|+..|+++++..|.+. .++..++.+|.+.|++++|++.++.+...
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 44555666666666666666666655332 44666666666666666666666666554
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=2.5e-09 Score=98.15 Aligned_cols=162 Identities=9% Similarity=0.006 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043440 99 FSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLK 178 (850)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (850)
+..++..+.+.|++++|+..|+++++..+. +...+..++.++...|++++|...|++.....+ +...+..+....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH--
Confidence 444555666667777777766666554443 445556666666666666666666666554422 222221111110
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHH
Q 043440 179 EDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLK 258 (850)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 258 (850)
+...++..+|+..++++++..+....++..++.++...|++++|...|
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 011112223445555555433322225555555555555555555555
Q ss_pred HHHHhCCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 259 DEMMSCGKPM-NLVVATSLMKGYYKQGDLSSALELLDKIK 297 (850)
Q Consensus 259 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 297 (850)
+++++..+.+ +...+..++..+...|+.++|...|++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5555543322 23455555555555555555555555543
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=4e-09 Score=96.78 Aligned_cols=161 Identities=10% Similarity=0.056 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEG-C 315 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 315 (850)
.+..++..+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|+++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 45556666666677777776666665532 2255666666666666777777777766665532 233322222111 1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CHhHHHHHHHHHHhcCCHHHH
Q 043440 316 CTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIA--NVFTYNDLLAWLCKRGKVSEA 393 (850)
Q Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 393 (850)
...++..+|+..+++.++.. +.+...+..+...+...|++++|+..|+++++..|. +..++..++..+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11122233455555554432 123444555555555555555555555555555442 234555555555555555555
Q ss_pred HHHHHHHH
Q 043440 394 CNLWQKMV 401 (850)
Q Consensus 394 ~~~~~~~~ 401 (850)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=5.7e-08 Score=91.98 Aligned_cols=176 Identities=13% Similarity=0.039 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC----CHHHHHHHH
Q 043440 532 SALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRR----DMESACKLF 607 (850)
Q Consensus 532 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 607 (850)
+|.+.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 66667777777777777777777777777654 55666667766666 5 778888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 043440 608 AELLEVGLSPNTVVYNSMINGFRN----LGNMEAALDMHRKMINDGIP-CDLQTYTTLIAGLLE----EGKLLTASNLYS 678 (850)
Q Consensus 608 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 678 (850)
++..+.| +...+..|...|.. .+++++|+.+|++..+.+.. .+..++..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877654 56667777777766 77888888888888776511 126677777777777 777888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHhCC
Q 043440 679 EMLSKGIEPDIITYTVLINGLYGK-G-----QLENARKIFDEMNRKC 719 (850)
Q Consensus 679 ~~~~~g~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 719 (850)
+..+. ..+...+..|..+|... | ++++|...|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88775 23445666677776543 3 7888888888887765
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1e-08 Score=102.47 Aligned_cols=166 Identities=9% Similarity=-0.057 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHH
Q 043440 130 LLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARA-YRMVI 208 (850)
Q Consensus 130 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 208 (850)
+...+..++..+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++.+....+ +... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHH
Confidence 3445566777777778888888888877766433 566777777777888888888888887766533 3332 22233
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChh
Q 043440 209 QALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPM-NLVVATSLMKGYYKQGDLS 287 (850)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 287 (850)
..+...++.++|+..+++.+...+....++..++..+...|++++|+..++++++..+.. +...+..++..+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 345566777778888888877654433378888888888888888888888887754332 2567788888888888888
Q ss_pred HHHHHHHHHHH
Q 043440 288 SALELLDKIKE 298 (850)
Q Consensus 288 ~A~~~~~~~~~ 298 (850)
+|...|++...
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88888777543
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=1.9e-08 Score=100.47 Aligned_cols=161 Identities=11% Similarity=0.039 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAV-LIEGC 315 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~ 315 (850)
.+..++..+.+.|++++|+..|+++++..+ .+...+..+...+.+.|++++|...++++... .|+...... ....+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 455555556666666666666666555432 24555566666666666666666666665443 233322221 12234
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--HhHHHHHHHHHHhcCCHHHH
Q 043440 316 CTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIAN--VFTYNDLLAWLCKRGKVSEA 393 (850)
Q Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 393 (850)
.+.++.++|...+++..... +.+...+..+...+...|++++|+..|.++++..|.+ ..++..++..+...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 45555555666665555543 2245555555666666666666666666666655533 55566666666666666666
Q ss_pred HHHHHHHH
Q 043440 394 CNLWQKMV 401 (850)
Q Consensus 394 ~~~~~~~~ 401 (850)
...|++.+
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=8.7e-09 Score=104.31 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=49.8
Q ss_pred HHcCCChhHHHHHHHHHHHCCC----CCC-h-hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cHHHHHHHHHH
Q 043440 211 LCRKPNLKVACGLVKEMRDMGR----VPS-R-VYTNLIGACVKHGNLTEAFRLKDEMMSC----GKPM-NLVVATSLMKG 279 (850)
Q Consensus 211 ~~~~g~~~~A~~~~~~~~~~~~----~~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~ 279 (850)
|...|++++|...|.++.+... .+. . ++..++.+|.+.|++++|+..|++.++. |.+. ...+++.+...
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555555555554443210 000 1 3444444455555555555554444321 1000 12234444444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 280 YYKQGDLSSALELLDKIKEDGLSP-----NKVTFAVLIEGCCTNGKVEKGYELYTQMK 332 (850)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (850)
|.+ |++++|+..|++..+..... ...++..+...+.+.|++++|+..|++.+
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444 55555555555443310000 02234444444444444444444444443
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=3.8e-08 Score=99.54 Aligned_cols=197 Identities=11% Similarity=0.002 Sum_probs=116.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc-CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHH
Q 043440 179 EDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCR-KPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRL 257 (850)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 257 (850)
.|++++|.+++++..+.... . +.+ .+++++|...|.++ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 46677777777766543211 1 122 47888888877665 4567788999999988
Q ss_pred HHHHHhC----CCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChhHHHHH
Q 043440 258 KDEMMSC----GKPM-NLVVATSLMKGYYKQGDLSSALELLDKIKEDGL---SP--NKVTFAVLIEGCCTNGKVEKGYEL 327 (850)
Q Consensus 258 ~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~ 327 (850)
|.+.... +.++ -..+++.+...|.+.|++++|+..|++..+.-. .+ ...++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8877652 1111 134677778888888888888888887654210 11 12456666666666 777777777
Q ss_pred HHHHHHCCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC----HhHHHHHHHHHHhcCCHHHHHHH
Q 043440 328 YTQMKHMGIKP-----SVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGI--AN----VFTYNDLLAWLCKRGKVSEACNL 396 (850)
Q Consensus 328 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~ 396 (850)
|++.++..... ...++..+...|.+.|++++|+..|++++...+ .+ ..++..++..+...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77665431000 023455555666666666666666666555322 11 12444444555555555555555
Q ss_pred HHHHH
Q 043440 397 WQKMV 401 (850)
Q Consensus 397 ~~~~~ 401 (850)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55555
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.1e-08 Score=110.20 Aligned_cols=152 Identities=11% Similarity=-0.056 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043440 563 NEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMH 642 (850)
Q Consensus 563 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (850)
|++++|+..+++..+... .+...+..+...|...|++++|.+.|++..+.... +...+..++.+|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566677777777665432 24566666677777777777777777777665432 4566666777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhC
Q 043440 643 RKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGK---GQLENARKIFDEMNRK 718 (850)
Q Consensus 643 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 718 (850)
+++++.. +.+...+..+..+|...|++++|.+.++++++.. +.+...+..+..++... |++++|.+.++++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7776654 4556666777777777777777777777766642 23455666666666666 7777777777776664
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=3.1e-08 Score=110.19 Aligned_cols=160 Identities=14% Similarity=0.048 Sum_probs=72.4
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 043440 215 PNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLD 294 (850)
Q Consensus 215 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (850)
|++++|+..|+++.+..+....++..++..+...|++++|...+++.++..+ .+..++..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4455555555555443322222555555555555555555555555555432 244455555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q 043440 295 KIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA---QLLEEAYKLFDEAVDSGI 371 (850)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~ 371 (850)
+..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.++++++.++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 555532 2234455555555555555555555555555442 12344455555555555 555555555555555555
Q ss_pred CCHhHH
Q 043440 372 ANVFTY 377 (850)
Q Consensus 372 ~~~~~~ 377 (850)
.+...+
T Consensus 160 ~~~~~~ 165 (568)
T 2vsy_A 160 GAVEPF 165 (568)
T ss_dssp CCSCHH
T ss_pred cccChH
Confidence 433333
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=1.1e-06 Score=87.58 Aligned_cols=171 Identities=13% Similarity=0.012 Sum_probs=96.6
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-C-ChhHHHHH
Q 043440 216 NLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHG-NLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQ-G-DLSSALEL 292 (850)
Q Consensus 216 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~ 292 (850)
..++|++++.+++..++....+|+.-..++...| .+++++.+++.++...+. +..+|+.-...+.+. + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3445666666666544333335555555555555 366666666666655432 555566555555544 4 56666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-------HH
Q 043440 293 LDKIKEDGLSPNKVTFAVLIEGCCTNGKVE--------KGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQL-------LE 357 (850)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~ 357 (850)
++++.+.. +.|..+|+...-.+.+.|.++ ++++.++++++.. +.|...|+.....+.+.+. ++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 66665542 224555555444444444444 5555666555543 2244555555555544443 56
Q ss_pred HHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCC
Q 043440 358 EAYKLFDEAVDSGIANVFTYNDLLAWLCKRGK 389 (850)
Q Consensus 358 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 389 (850)
++++.+.+++...|.|..+|+.+-..+.+.|+
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777777777666666554
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=1.2e-06 Score=87.51 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=158.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc-C-CHHHH
Q 043440 527 EDDMISALTVYREMHESGLSPNVVTYTILINGFCRKN-EIDLALKMRNEMMNEGLQLDATAYGSLINGFCRR-R-DMESA 603 (850)
Q Consensus 527 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 603 (850)
.+..++|++++++++..+ +.+..+|+.-...+...| .+++++..++.++...++ +..+|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 344567777777777765 556666776666666667 478888888888776544 667777766666665 5 77788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 043440 604 CKLFAELLEVGLSPNTVVYNSMINGFRNLGNME--------AALDMHRKMINDGIPCDLQTYTTLIAGLLEEGK------ 669 (850)
Q Consensus 604 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 669 (850)
+++++.+++..++ |..+|+--.....+.|.++ ++++.++++++.+ +.|..+|+.....+...++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 8888888776544 6777776666666666555 8888888888876 6677888888777777775
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHhCC-----CCCC
Q 043440 670 -LLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQL--------------------ENARKIFDEMNRKC-----LTPN 723 (850)
Q Consensus 670 -~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~p~ 723 (850)
++++++.+++++.. .+-|...|+.+-..+.+.|+. .+..+...++.... -.+.
T Consensus 223 ~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888888875 245777887777777766653 23333333333321 1247
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043440 724 VFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYD 763 (850)
Q Consensus 724 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 763 (850)
+..+..|+++|...|+.++|.++++.+.+. ..|-..-|+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 888999999999999999999999998753 344444443
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=2.8e-07 Score=87.47 Aligned_cols=125 Identities=11% Similarity=-0.046 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 043440 274 TSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKA 353 (850)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (850)
..+...+...|++++|+..|++. +.|+...+..+...+...|++++|+..|++.++.. +.+...+..+...|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 34444555555555555555554 23445555555555555555555555555555442 22344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 354 QLLEEAYKLFDEAVDSGIANV----------------FTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 354 g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
|++++|+..|+++++..+.+. .++..++..+.+.|++++|...|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666655555444333 66677777777777777777777777665
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=8e-08 Score=81.90 Aligned_cols=99 Identities=16% Similarity=0.065 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043440 655 QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGY 734 (850)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 734 (850)
..+...+..|.+.|++++|++.|+++++.. +.+...|..+..++.+.|++++|++.|++.++.+ +.+..+|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 455566666666666666666666666632 3355566666666667777777777777766632 12566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 043440 735 FKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 735 ~~~g~~~~A~~~~~~~~~~g~ 755 (850)
...|++++|++.|++.++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHCCCHHHHHHHHHHHHHHCc
Confidence 777777777777777766443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=6.2e-07 Score=90.00 Aligned_cols=163 Identities=12% Similarity=0.010 Sum_probs=121.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043440 590 LINGFCRRRDMESACKLFAELLEVGLS-PNT----VVYNSMINGFRNLGNMEAALDMHRKMINDGIP-CD----LQTYTT 659 (850)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 659 (850)
.+..+...|++++|..++++..+.... |+. ..+..+...+...|++++|+..|+++++.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356678889999999999888764321 221 13345667777788999999999999874211 22 346889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-CHHHHH
Q 043440 660 LIAGLLEEGKLLTASNLYSEMLS----K-GIEPD-IITYTVLINGLYGKGQLENARKIFDEMNRK----CLTP-NVFIFN 728 (850)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~~~~----~-g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~ 728 (850)
++..|...|++++|+..++++++ . +..+. ..++..+...|.+.|++++|++.+++.++. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999884 1 11222 237888999999999999999999988752 1122 267899
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 043440 729 TLIAGYFKEG-NLQEAFRLHNEMLD 752 (850)
Q Consensus 729 ~l~~~~~~~g-~~~~A~~~~~~~~~ 752 (850)
.++.+|.+.| .+++|.+.|++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 47999999999864
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.3e-07 Score=91.03 Aligned_cols=198 Identities=10% Similarity=-0.023 Sum_probs=125.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHcCCChhHHHHHHHHHHHC------------CCC-----
Q 043440 178 KEDTTEEAEKYFRDAKALGVKLDARAYRMV-------IQALCRKPNLKVACGLVKEMRDM------------GRV----- 233 (850)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~----- 233 (850)
..+++..|.+.|.++....+. ....|..+ ...+.+.++..+++..+.+.+.. |..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 456677777777776665443 55566655 44555555555666655555541 210
Q ss_pred ----CChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHH
Q 043440 234 ----PSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN--KVT 307 (850)
Q Consensus 234 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 307 (850)
++.....++..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... ..|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHH
Confidence 01145567777888888888888888776644 33336666777788888888888888765442 1111 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHH
Q 043440 308 FAVLIEGCCTNGKVEKGYELYTQMKHMGIKPS--VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDL 380 (850)
Q Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 380 (850)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....|. ..++..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 67777888888888888888888775432243 234555666677778888888888887776664 4444433
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=1.1e-06 Score=88.19 Aligned_cols=167 Identities=9% Similarity=0.008 Sum_probs=118.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 043440 586 AYGSLINGFCRRRDMESACKLFAELLEVGLSPN-----TVVYNSMINGFRNLGNMEAALDMHRKMINDGI---PCD--LQ 655 (850)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 655 (850)
.+...+..+...|++++|.+.+.+..+.....+ ...+..++..+...|++++|+..++++++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667778888888888877776532211 12234456667788899999999988876421 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CCC-CH
Q 043440 656 TYTTLIAGLLEEGKLLTASNLYSEMLSK--GIEPD----IITYTVLINGLYGKGQLENARKIFDEMNRKC----LTP-NV 724 (850)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 724 (850)
+++.++..|...|++++|+..++++++. ..+.+ ..++..++.+|.+.|++++|++.+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999888731 01111 2578888889999999999999999887531 111 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 043440 725 FIFNTLIAGYFKEGNLQEA-FRLHNEMLD 752 (850)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 752 (850)
.+|..++.+|...|++++| ...+++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788999999999999999 777887753
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=2.4e-07 Score=87.92 Aligned_cols=129 Identities=9% Similarity=-0.062 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043440 622 YNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYG 701 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 701 (850)
+..++..+...|++++|+..|++++ +|+..++..++.++...|++++|+..++++++.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445555666666666666666552 3455666666666666666666666666666532 3345566666666667
Q ss_pred CCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 702 KGQLENARKIFDEMNRKCLT--------------P-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 702 ~g~~~~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
.|++++|++.|+++.+.... | ...+|..++.+|...|++++|...|+++++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 77777777777766663211 1 226677777788888888888888888776544
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=1.1e-08 Score=89.97 Aligned_cols=101 Identities=7% Similarity=-0.064 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 043440 651 PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNT 729 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 729 (850)
|.+...+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|+++++. .| ++..|..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHH
Confidence 3355677778888888888888888888888742 346778888888888888888888888888874 34 6777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 730 LIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
++.+|...|++++|+..|++.++..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888888744
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=2.3e-07 Score=79.06 Aligned_cols=107 Identities=8% Similarity=0.098 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL 351 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (850)
.+...+..|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444455555555555555555554431 2234445555555555555555555555554432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCHhHHHHH
Q 043440 352 KAQLLEEAYKLFDEAVDSGIANVFTYNDL 380 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 380 (850)
..|++++|++.|+++++..|.+..++..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 55555555555555555555444444443
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.1e-07 Score=89.66 Aligned_cols=191 Identities=13% Similarity=-0.041 Sum_probs=123.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCC-----CC------
Q 043440 104 RSYVRADRINDAVDCCNGMIERDIIPLLRSMNSV-------LKALVRRNLIDEAKEFYNKMNLKGLG-----VD------ 165 (850)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~------ 165 (850)
.++ ..+++..|.+.|.++.+.++. ....|+-+ ..++.+.++..+++..+..-.+..+. -+
T Consensus 15 ~~~-~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 15 VSM-LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred hcc-cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 344 578888888999888877765 34445545 55666666666666666655442100 00
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-
Q 043440 166 ---------SVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPS- 235 (850)
Q Consensus 166 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 235 (850)
...+......+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1223345566777888888888888777654 332255555667777888888888887554421 121
Q ss_pred -h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043440 236 -R-VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPM--NLVVATSLMKGYYKQGDLSSALELLDKIKED 299 (850)
Q Consensus 236 -~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 299 (850)
. ++..++.++...|++++|+..|++.......| ....+.....++.+.|+.++|...|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 67777888888888888888888776433213 3346667777777888888888888888774
No 128
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.74 E-value=4.3e-06 Score=83.15 Aligned_cols=183 Identities=11% Similarity=0.011 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 043440 565 IDLALKMRNEMMNEGLQLDATAYGSLINGFCRRR--DMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGN-MEAALDM 641 (850)
Q Consensus 565 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 641 (850)
+++++.+++.++..+++ +..+|+.-...+...+ .+++++.+++.+.+..+. |..+|+--.......|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56677777777765443 6677776666666666 377788888888776554 67777777777777777 5778888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-----
Q 043440 642 HRKMINDGIPCDLQTYTTLIAGLLEE--------------GKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGK----- 702 (850)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----- 702 (850)
+.++++.+ +.|..+|+.....+... +.++++++.+.+++.. .+-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccCccc
Confidence 88877765 66777777666665544 4477788888888874 244677777666655555
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHCC
Q 043440 703 ------GQLENARKIFDEMNRKCLTPNVFIFNTLIAGY-----FKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 703 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~g 754 (850)
+.++++++.++++.+ +.|+. .|+.+..++ ...|..+++...+.++++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457888888888888 44543 344333222 24577888888888888743
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=3.4e-06 Score=84.54 Aligned_cols=163 Identities=9% Similarity=0.038 Sum_probs=122.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 043440 555 LINGFCRKNEIDLALKMRNEMMNEGL-QLDA----TAYGSLINGFCRRRDMESACKLFAELLEVGLS-PN----TVVYNS 624 (850)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 624 (850)
.+..+...|++++|..++++..+... .++. ..+..+...+...+++++|+..|+++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667888999999999998887422 2221 13334667777888999999999999874322 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 043440 625 MINGFRNLGNMEAALDMHRKMIND-----GIPC-DLQTYTTLIAGLLEEGKLLTASNLYSEMLSK----GIEPD-IITYT 693 (850)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~ 693 (850)
++..|...|++++|+..|+++++. +..+ ...++..++..|.+.|++++|+..++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998842 1122 2347889999999999999999999988762 22222 56888
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHh
Q 043440 694 VLINGLYGKGQ-LENARKIFDEMNR 717 (850)
Q Consensus 694 ~l~~~~~~~g~-~~~A~~~~~~~~~ 717 (850)
.+..++.+.|+ +++|.+.++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988765
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=4e-08 Score=97.72 Aligned_cols=194 Identities=10% Similarity=-0.003 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 043440 200 DARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKG 279 (850)
Q Consensus 200 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 279 (850)
+...+..+...+.+.|++++|+..|+++++..+.....+..++.+|.+.|++++|+..+++.++..+ .+...+..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445566666666677777777777776664433222666777777777777777777777666532 356666677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043440 280 YYKQGDLSSALELLDKIKEDGLSPNK-VTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEE 358 (850)
Q Consensus 280 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (850)
|...|++++|+..|++..+.+ |+. ..+...+....+ ..++... ......-.+.+......+... ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777765531 110 001111111111 0111111 112222223333333333222 2466666
Q ss_pred HHHHHHHHHHCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 043440 359 AYKLFDEAVDSGIANVFTYNDLLAWLCKR-GKVSEACNLWQKMVS 402 (850)
Q Consensus 359 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 402 (850)
|++.++.+++..|.+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77666666666655555555555444444 456666666665544
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=5.2e-07 Score=81.53 Aligned_cols=129 Identities=11% Similarity=0.023 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043440 620 VVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGL 699 (850)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 699 (850)
..+..++..+...|++++|+..|++.++.. +.+..++..++.++...|++++|...+++.++.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456666777778888888888888877764 5567777788888888888888888888887742 34566777888888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 043440 700 YGKGQLENARKIFDEMNRKCLTPNVFIFNTLI--AGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~ 751 (850)
...|++++|...|+++.+... .+...+..+. ..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888877431 2455554333 34777788888888877764
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=1.9e-06 Score=86.31 Aligned_cols=168 Identities=8% Similarity=0.033 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---CC--H
Q 043440 550 VTYTILINGFCRKNEIDLALKMRNEMMNEGLQLD-----ATAYGSLINGFCRRRDMESACKLFAELLEVGLS---PN--T 619 (850)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---p~--~ 619 (850)
..+...+..+...|++++|.+.+.+.++.....+ ...+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566677888888888888888776532211 122344566678888999999999998754221 11 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 043440 620 VVYNSMINGFRNLGNMEAALDMHRKMIND--GIPCD----LQTYTTLIAGLLEEGKLLTASNLYSEMLSK----GIEPD- 688 (850)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~~- 688 (850)
.+++.++..|...|++++|+..|+++++. ..+.+ ..++..++..|...|++++|+..+++.++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999999998832 11221 258889999999999999999999998762 11111
Q ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHHh
Q 043440 689 IITYTVLINGLYGKGQLENA-RKIFDEMNR 717 (850)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 717 (850)
..+|..+..+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777887764
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=1.3e-07 Score=83.19 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHH
Q 043440 306 VTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLC 385 (850)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (850)
..+..+...+.+.|++++|+..|++++... +.+...|..+..+|...|++++|+..|+++++..|.++.+|..++.+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 345555556666666666666666665543 2245555666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 043440 386 KRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~ 403 (850)
+.|++++|+..|++.++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
No 134
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=1.2e-05 Score=79.89 Aligned_cols=195 Identities=11% Similarity=0.043 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC-HHHHHHH
Q 043440 530 MISALTVYREMHESGLSPNVVTYTILINGFCRKN--EIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRD-MESACKL 606 (850)
Q Consensus 530 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 606 (850)
+++++.+++.++... |.+..+|+.-...+.+.+ .+++++.+++.+.+..+. +..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456666666666554 556666665555555555 366677777776665433 66666666656666666 4677777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 043440 607 FAELLEVGLSPNTVVYNSMINGFRNL--------------GNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEE----- 667 (850)
Q Consensus 607 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 667 (850)
++++++..+. |...|+.....+.+. +.++++++.+.+.+... |.|..+|+-+-..+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 7777766544 566666655555444 44778888888888775 66777777665555554
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 043440 668 ------GKLLTASNLYSEMLSKGIEPDIITYTVLING-----LYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAG 733 (850)
Q Consensus 668 ------g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 733 (850)
+.++++++.++++++ ..||. .|..+..+ ....|..++....+.++++ +.| ...-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHH
Confidence 457889999999988 45664 34332222 2246778899999999988 446 33445554443
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=9e-08 Score=84.38 Aligned_cols=111 Identities=12% Similarity=-0.054 Sum_probs=83.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043440 641 MHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCL 720 (850)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (850)
.|++++... |.+...+..+...+...|++++|+..|++++... +.+...|..+..++...|++++|+..|+++++..
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 455555543 4455677777888888888888888888887742 3467778888888888888888888888888743
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 721 TPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 721 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
+.+...|..++.+|...|++++|+..|++.++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2266778888888888888888888888887643
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.9e-07 Score=92.74 Aligned_cols=194 Identities=9% Similarity=-0.020 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043440 548 NVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMIN 627 (850)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 627 (850)
+...+..+...+.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|...+++.++..+. +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 456667777778888888888888888877633 26777888888888888888888888888876433 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043440 628 GFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN 707 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 707 (850)
+|...|++++|+..|+++++.+ |.+...+...+..... ..++.. +........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888888888888888887652 1111111111111111 111111 2222333345555554444332 3688999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 043440 708 ARKIFDEMNRKCLTPN-VFIFNTLIAGYFKE-GNLQEAFRLHNEMLD 752 (850)
Q Consensus 708 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 752 (850)
|++.+++..+. .|+ ......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999988874 454 44445555555555 778889999988765
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=9.3e-07 Score=79.80 Aligned_cols=127 Identities=9% Similarity=-0.002 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL 351 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (850)
.+..++..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555555555555555555431 2234455555555555555555555555555542 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCHhHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 043440 352 KAQLLEEAYKLFDEAVDSGIANVFTYNDL--LAWLCKRGKVSEACNLWQKM 400 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 400 (850)
..|++++|...|+++++..|.+..++..+ +..+...|++++|+..+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55556666666655555555444444222 22245555666666555544
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1e-06 Score=74.80 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 043440 270 LVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCG 349 (850)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (850)
...+..++..+...|++++|.+.|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555555555555555555555432 2234455555555555555555555555555432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHH
Q 043440 350 FLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLC 385 (850)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (850)
+...|++++|...|+++.+..|.+..++..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 555555555555555555555545555544444443
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=2.5e-07 Score=87.00 Aligned_cols=156 Identities=14% Similarity=0.025 Sum_probs=99.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCH
Q 043440 596 RRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMIND----GI-PCDLQTYTTLIAGLLEEGKL 670 (850)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 670 (850)
..|++++|.+.++.+.. .......++..+...+...|++++|+..+++.++. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45667777764444432 22224556677777777777777777777776652 11 12345677777778888888
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--C-CC--CHHHHHHHHHHHHhcCC
Q 043440 671 LTASNLYSEMLSK----GIEP--DIITYTVLINGLYGKGQLENARKIFDEMNRKC--L-TP--NVFIFNTLIAGYFKEGN 739 (850)
Q Consensus 671 ~~A~~~~~~~~~~----g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p--~~~~~~~l~~~~~~~g~ 739 (850)
++|...+++.++. +-.+ ....+..+...+...|++++|...+++..+.. . .+ ...++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888777652 1111 12356777778888888888888888776421 0 11 13346778888888888
Q ss_pred HHHHHHHHHHHHH
Q 043440 740 LQEAFRLHNEMLD 752 (850)
Q Consensus 740 ~~~A~~~~~~~~~ 752 (850)
+++|...+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=8.4e-07 Score=76.49 Aligned_cols=117 Identities=5% Similarity=0.014 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 043440 269 NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLC 348 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 348 (850)
+...+..++..+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34444555555555555555555555554431 1234444445555555555555555555554432 123444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhc
Q 043440 349 GFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKR 387 (850)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (850)
.+.+.|++++|++.|+++++..+.+...+..+...+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 555555555555555555554444444444444444433
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=1.2e-06 Score=74.37 Aligned_cols=95 Identities=16% Similarity=0.298 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043440 621 VYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLY 700 (850)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 700 (850)
.+..++..+...|++++|++.|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444444432 2334444444444444444444444444444321 223334444444444
Q ss_pred hCCCHHHHHHHHHHHHh
Q 043440 701 GKGQLENARKIFDEMNR 717 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~ 717 (850)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=7.9e-07 Score=76.67 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043440 619 TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLING 698 (850)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 698 (850)
...+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..++++++.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444555555555555555555555555543 3344555555555555555555555555555431 2234455555555
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 043440 699 LYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEG 738 (850)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 738 (850)
+.+.|++++|.+.|++..+.. | +...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 555555555555555554421 2 3344444444444433
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=8.5e-07 Score=90.63 Aligned_cols=131 Identities=14% Similarity=0.050 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 618 NTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCD---------------LQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 618 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
+...+..+...|.+.|++++|+..|+++++.. +.+ ..+|..+..+|.+.|++++|+..++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667777777777777777777777653 222 46777788888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 043440 683 KGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEA-FRLHNEMLD 752 (850)
Q Consensus 683 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 752 (850)
.. +.+...|..+..+|...|++++|+..|+++++. .| +..++..+..++...|++++| ...|++|.+
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 345667778888888888888888888888774 34 667778888888888888877 456666653
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=1.1e-06 Score=82.63 Aligned_cols=84 Identities=8% Similarity=-0.069 Sum_probs=36.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCCh
Q 043440 213 RKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSC----GK-PMNLVVATSLMKGYYKQGDL 286 (850)
Q Consensus 213 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~ 286 (850)
..|++++|.+.++.+.. .+.... ++..++..+...|++++|...+++.+.. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 44555555553333322 111112 5555555555555555555555554431 11 11223344444445555555
Q ss_pred hHHHHHHHHHH
Q 043440 287 SSALELLDKIK 297 (850)
Q Consensus 287 ~~A~~~~~~~~ 297 (850)
++|...+++..
T Consensus 83 ~~A~~~~~~al 93 (203)
T 3gw4_A 83 DAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=6.5e-07 Score=76.37 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 043440 657 YTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCL--TPN----VFIFNTL 730 (850)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l 730 (850)
+..++..+.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|++.+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444421 12333444444444444444444444444443110 000 1244555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043440 731 IAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 731 ~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
+.++...|++++|++.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555554
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=1.4e-06 Score=74.73 Aligned_cols=118 Identities=12% Similarity=-0.007 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 043440 270 LVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCG 349 (850)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (850)
...+..++..+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555666666666666666655532 2244555555556666666666666666655542 2234455555556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCC
Q 043440 350 FLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGK 389 (850)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 389 (850)
+...|++++|...|+++.+..|.+..++..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666666666555555556656555555554
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=1.2e-06 Score=75.10 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043440 621 VYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLY 700 (850)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 700 (850)
.+..++..+...|++++|+..|+++.... +.+...+..++..+...|++++|...+++.++.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 44444444555555555555555554432 3344444555555555555555555555554421 223444444455555
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043440 701 GKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGN 739 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 739 (850)
..|++++|.+.|++..+.. +.+...+..++.++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554421 1134444444444444443
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=3.3e-07 Score=83.93 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCH--HHHH
Q 043440 633 GNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLING-LYGKGQL--ENAR 709 (850)
Q Consensus 633 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~g~~--~~A~ 709 (850)
|++++|+..+++.++.. +.+...+..++..|...|++++|...++++++.. +.+...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 33444444444444332 3333444444444444444444444444444321 1233334444444 3344444 4444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 710 KIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 710 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
..|+++++.. +.+...|..++.+|...|++++|+..|+++++
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444444421 11334444444444444444444444444444
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=7.2e-07 Score=81.66 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=68.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCH--HH
Q 043440 282 KQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCG-FLKAQLL--EE 358 (850)
Q Consensus 282 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 358 (850)
..|++++|+..|++..+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455566666665555532 2344555556666666666666666666655543 2244455555555 5556665 66
Q ss_pred HHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 359 AYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 359 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
|+..|+++++..|.+..++..++..|...|++++|+..|+++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666666666666666666666666666666666666654
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=5.6e-07 Score=79.23 Aligned_cols=95 Identities=16% Similarity=0.005 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL 351 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (850)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++++... +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33444444444444444444444444321 1233344444444444444444444444444332 112333334444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043440 352 KAQLLEEAYKLFDEAVD 368 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~ 368 (850)
..|++++|+..|+++++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.4e-06 Score=89.06 Aligned_cols=130 Identities=13% Similarity=-0.003 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043440 271 VVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN--------------KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGI 336 (850)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (850)
..+..+...|.+.|++++|+..|++..+..+... ...|..+..++.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444455555555555555555555544321111 3566666666777777777777777666653
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 043440 337 KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEA-CNLWQKMV 401 (850)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 401 (850)
+.+...+..+..+|...|++++|+..|+++++..|.+..++..+...+.+.|++++| ...|+.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566666667777777777777777777776666666777777777777777666 33455544
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=1.2e-07 Score=88.93 Aligned_cols=130 Identities=13% Similarity=-0.028 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 619 TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDL----------------QTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
...+..++..+...|++++|+..|+++++.. +.+. .++..+..+|...|++++|+..++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3345556666666777777777777766642 1121 4555566666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 043440 683 KGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAF-RLHNEML 751 (850)
Q Consensus 683 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 751 (850)
.. +.+...+..+..++...|++++|++.|++.++.. +.+..++..+..++...|+.+++. ..|..|.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 31 2344555566666666666666666666665532 114555555555555555555554 3444443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=9e-07 Score=75.50 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 043440 619 TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKG--IEPD----IITY 692 (850)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~~~----~~~~ 692 (850)
...+..++..+.+.|++++|++.|+++++.+ |.+..+|..+..+|...|++++|++.++++++.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4577889999999999999999999999986 7788999999999999999999999999998731 1122 2367
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043440 693 TVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTL 730 (850)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 730 (850)
..+..++...|++++|++.|++.++ ..|++.+...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 7888899999999999999999988 44676655443
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.2e-06 Score=74.67 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 654 LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAG 733 (850)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 733 (850)
...+..++..+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..|++.++.. +.+..+|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3455556666666667777777666666632 3345666666777777777777777777776642 1256667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 043440 734 YFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 734 ~~~~g~~~~A~~~~~~~~~~ 753 (850)
|...|++++|+..|++.++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777654
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.2e-06 Score=72.01 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=8.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 043440 276 LMKGYYKQGDLSSALELLDKIK 297 (850)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~~ 297 (850)
+...+.+.|++++|+..|++..
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al 31 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMI 31 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333444444444443333
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=8.8e-07 Score=77.49 Aligned_cols=99 Identities=13% Similarity=-0.031 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043440 653 DLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIA 732 (850)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 732 (850)
+...+..+...+...|++++|+..|++++... +.+...|..+..++...|++++|+..|+++++.. +.++..|..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44556666667777777777777777777642 3356667777777777777777777777777643 125666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 043440 733 GYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 733 ~~~~~g~~~~A~~~~~~~~~~ 753 (850)
+|...|++++|+..|+++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=3.2e-07 Score=85.89 Aligned_cols=122 Identities=13% Similarity=0.032 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPN---------------KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGI 336 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (850)
.+..+...+.+.|++++|+..|++..+..+... ...|..+..++.+.|++++|+..++..++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 445555555566666666666666555311100 1345555555555555555555555555542
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043440 337 KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEAC 394 (850)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (850)
+.+...+..+..+|...|++++|+..|+++++..|.+..++..+..++...++.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455555555555555555555555555555555555555555555544444443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=6.5e-06 Score=68.87 Aligned_cols=98 Identities=16% Similarity=0.014 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043440 655 QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGY 734 (850)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 734 (850)
..+..++..+...|++++|...+++++... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555566666666666555531 2245555555666666666666666666665532 12455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 043440 735 FKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 735 ~~~g~~~~A~~~~~~~~~~g 754 (850)
...|++++|...+++.++..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66666666666666666544
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=8.6e-06 Score=68.12 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL 351 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (850)
.+..++..+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444444444555555555555544431 1233444444444444455555555444444432 113334444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCHhHHH
Q 043440 352 KAQLLEEAYKLFDEAVDSGIANVFTYN 378 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~~~~~ 378 (850)
..|++++|...++++.+..|.+...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 445555555555554444444443333
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=8.2e-06 Score=71.71 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043440 652 CDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPD----IITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIF 727 (850)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 727 (850)
.+...+..+...+...|++++|...|++.++. .|+ ...+..+..++...|++++|+..+++..+.. +.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35566667777777777777777777777763 454 4567777777777888888888888777642 2256777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHh
Q 043440 728 NTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVN 767 (850)
Q Consensus 728 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 767 (850)
..++.+|...|++++|...|++.++..+. +...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 77888888888888888888887765433 3444444433
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=3.1e-06 Score=73.96 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 307 TFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
.|..+..++.+.|++++|+..|+..+.
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333333333333444444433333333
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=2.7e-06 Score=72.95 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 043440 622 YNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGI--EPD----IITYTVL 695 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~~l 695 (850)
+..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++++... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444445555555444444432 33444444444444444444444444444443210 011 3334444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 043440 696 INGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
..++...|++++|.+.|+++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=5.4e-06 Score=71.83 Aligned_cols=96 Identities=15% Similarity=-0.032 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043440 654 LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAG 733 (850)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 733 (850)
...+..++..+...|++++|+..|+++++.. +.+...|..+..++...|++++|...+++.++.. +.+...|..++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444444444444444444444444444421 2233344444444444444444444444444421 1134444444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 043440 734 YFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 734 ~~~~g~~~~A~~~~~~~~ 751 (850)
|...|++++|+..|++++
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444445544444444444
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=3.7e-06 Score=69.64 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 043440 655 QTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP--NVFIFNTLIA 732 (850)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 732 (850)
..+..++..+...|++++|...++++++.. +.+...+..+..++...|++++|.+.|++..+.. +. +..+|..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555555431 2234455555555555555555555555555532 12 3455555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCC
Q 043440 733 GYFKE-GNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 733 ~~~~~-g~~~~A~~~~~~~~~~g 754 (850)
+|... |++++|++.++++.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666 66666666666655443
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=8.4e-06 Score=73.26 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFL 351 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (850)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..|++.++.. +.+...+..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444444444444444444444431 1133444444444444444444444444444432 112344444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCC
Q 043440 352 KAQLLEEAYKLFDEAVDSGI 371 (850)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~ 371 (850)
..|++++|+..|+++++..|
T Consensus 91 ~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHS
T ss_pred HccCHHHHHHHHHHHHHhCC
Confidence 44444444444444444444
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.4e-05 Score=70.23 Aligned_cols=101 Identities=13% Similarity=-0.035 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 043440 271 VVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN----KVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSL 346 (850)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 346 (850)
..+..+...+.+.|++++|...|++..+. .|+ ...+..+...+...|++++|+..++...+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444444444444444444432 222 2333344444444444444444444443321 1123333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCH
Q 043440 347 LCGFLKAQLLEEAYKLFDEAVDSGIANV 374 (850)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (850)
..++...|++++|...|+++++..|.+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4444444444444444444444443333
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=5.4e-06 Score=69.84 Aligned_cols=94 Identities=13% Similarity=0.010 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 043440 657 YTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYF 735 (850)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 735 (850)
+..++..+.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..|++.++. .| +...|..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445556666777777777777776632 335566667777777777777777777777663 23 5666777777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 043440 736 KEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 736 ~~g~~~~A~~~~~~~~~~ 753 (850)
..|++++|+..++++++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777653
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.9e-05 Score=82.92 Aligned_cols=121 Identities=9% Similarity=0.017 Sum_probs=52.8
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHH
Q 043440 631 NLGNMEAALDMHRKMIND----GIP-CDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK--GI--EP-DIITYTVLINGLY 700 (850)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~--~~-~~~~~~~l~~~~~ 700 (850)
..|++++|+.++++.... +.. .-..++..++..|...|++++|..+++++... +. .+ ...++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 344555555555444321 111 11234445555555555555555555554431 10 11 1224444555555
Q ss_pred hCCCHHHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 701 GKGQLENARKIFDEMNRK--CL-TP-N--VFIFNTLIAGYFKEGNLQEAFRLHNEML 751 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (850)
..|++++|..++++.... .+ .| . ...+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555544321 01 11 0 1234444444555555555555554443
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=6.3e-06 Score=68.20 Aligned_cols=92 Identities=12% Similarity=-0.049 Sum_probs=39.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CHhHHHHHHHHHHhc
Q 043440 310 VLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIA--NVFTYNDLLAWLCKR 387 (850)
Q Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 387 (850)
.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++++..+. +..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 33333444444444444444433322 112333344444444444444444444444444443 444444444444444
Q ss_pred -CCHHHHHHHHHHHHh
Q 043440 388 -GKVSEACNLWQKMVS 402 (850)
Q Consensus 388 -g~~~~A~~~~~~~~~ 402 (850)
|++++|++.+++...
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 444444444444444
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=1e-05 Score=70.06 Aligned_cols=61 Identities=15% Similarity=-0.014 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
.+..++..+...|++++|+..|++.+...+ .+...|..+...+...|++++|...|++..+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333344444444444444444444333221 1233333334444444444444444444333
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=1.2e-05 Score=72.16 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHH
Q 043440 304 NKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAW 383 (850)
Q Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 383 (850)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..|+++++..|.+..+|..+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45567778888888888888888888888764 33677788888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 043440 384 LCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~ 403 (850)
|...|++++|+..|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88888888888888888775
No 172
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=3.7e-05 Score=84.01 Aligned_cols=174 Identities=11% Similarity=0.029 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043440 598 RDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGN----------MEAALDMHRKMINDGIPCDLQTYTTLIAGLLEE 667 (850)
Q Consensus 598 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 667 (850)
...++|++.+++++..++. +..+|+.-..++.+.|+ ++++++.++++++.+ |.+..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456778888888887554 66777777777777777 899999999999876 77888898888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 043440 668 G--KLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKG-QLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKE------- 737 (850)
Q Consensus 668 g--~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 737 (850)
| +++++++.++++++.. +-+...|+.-..++.+.| .++++++.++++++..+ -|..+|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence 8 6799999999999853 447778888888888888 88999999999988642 2788899888887773
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCchH
Q 043440 738 -------GNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWA 776 (850)
Q Consensus 738 -------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 776 (850)
+.+++|++++++++...+. |...|.-+...+.+.|+.+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 6689999999999987665 6677777777777766643
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=8e-06 Score=69.88 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH
Q 043440 585 TAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCD-------LQTY 657 (850)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~ 657 (850)
..+..+...+...|++++|...|++..+..+ .+...+..++..|...|++++|+..|+++.+.. +.+ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHH
Confidence 3445555566666666666666666665432 245566666666666666666666666666542 112 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043440 658 TTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLI 696 (850)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 696 (850)
..++.++...|++++|.+.++++++. .|+......+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 66666677777777777777776663 34544444443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=8.6e-06 Score=68.56 Aligned_cols=90 Identities=7% Similarity=-0.148 Sum_probs=40.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHH
Q 043440 312 IEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVS 391 (850)
Q Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 391 (850)
...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++++..|.+..++..++..+...|+++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 334444444444444444444432 1133344444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHh
Q 043440 392 EACNLWQKMVS 402 (850)
Q Consensus 392 ~A~~~~~~~~~ 402 (850)
+|+..|++.++
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.23 E-value=8e-06 Score=73.10 Aligned_cols=132 Identities=19% Similarity=0.085 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 043440 621 VYNSMINGFRNLGNMEAALDMHRKMINDGI-PCD----LQTYTTLIAGLLEEGKLLTASNLYSEMLSK----GIEP-DII 690 (850)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~ 690 (850)
++..+...|...|++++|+..+++.++... .++ ..++..+...+...|++++|...++++++. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455555666666666666666666554310 011 135666677777777777777777776542 1011 133
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRK----CLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
++..+...+...|++++|.+.+++..+. +..+ ...++..++.+|...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888877642 1111 245577888888899999999998888764
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=8.6e-05 Score=79.20 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=66.5
Q ss_pred HHHcCCChhHHHHHHHHHHHC----CCCCCh--hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHHHHHHHHH
Q 043440 210 ALCRKPNLKVACGLVKEMRDM----GRVPSR--VYTNLIGACVKHGNLTEAFRLKDEMMSC----GK-PMNLVVATSLMK 278 (850)
Q Consensus 210 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~ 278 (850)
.+...|+++.|..++++.... +..+.. ++..|+..|...|++++|..+++++... +. +....++..++.
T Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
T 4b4t_Q 104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK 183 (434)
T ss_dssp HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 333456677777776665432 222222 5666777777777777777776665431 11 112345666666
Q ss_pred HHHhcCChhHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043440 279 GYYKQGDLSSALELLDKIKED--GL-SP-N--KVTFAVLIEGCCTNGKVEKGYELYTQMK 332 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (850)
.|...|++++|...+++.... .. .| . ...+..++..+...|++++|...|.+..
T Consensus 184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666667777776666665431 01 11 1 1234444455555666666665555543
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=1.4e-05 Score=69.14 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 691 TYTVLINGLYGKGQLENARKIFDEMNRK-----CLTP-NVFIF----NTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.|..+..++.+.|++++|+..+++.++. .+.| +...| ...+.++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777778877777777777763 1156 45668 8999999999999999999999876
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.18 E-value=1.3e-05 Score=85.59 Aligned_cols=130 Identities=13% Similarity=0.040 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 619 TVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCD---------------LQTYTTLIAGLLEEGKLLTASNLYSEMLSK 683 (850)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 683 (850)
...+..+...|.+.|++++|+..|+++++.. +.+ ..+|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455556666666677777777776666542 222 467777888888888888888888888774
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 043440 684 GIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFR-LHNEMLD 752 (850)
Q Consensus 684 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 752 (850)
. +.+...|..+..+|...|++++|+..|+++++. .| +..++..+..++.+.|++++|.+ .+++|..
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 335667778888888888888888888888774 34 55667778888888888777663 4555543
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=4.5e-05 Score=83.29 Aligned_cols=173 Identities=6% Similarity=-0.008 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043440 564 EIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRD----------MESACKLFAELLEVGLSPNTVVYNSMINGFRNLG 633 (850)
Q Consensus 564 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 633 (850)
..++|++.+++++..++. +..+|+.--.++...|+ ++++++.++.+.+..++ +..+|+.-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345677777777776443 56667666666666666 88888888888887655 7788888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------
Q 043440 634 --NMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEG-KLLTASNLYSEMLSKGIEPDIITYTVLINGLYGK-------- 702 (850)
Q Consensus 634 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-------- 702 (850)
+++++++.++++++.+ +.+..+|+.-...+...| .++++++.++++++.. +.+...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999998886 678888888888888888 8888999888888753 44777888777776653
Q ss_pred ------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 043440 703 ------GQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQE 742 (850)
Q Consensus 703 ------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 742 (850)
+.+++|++.+++++.. .| |..+|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5679999999999984 35 78889999999988888555
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=6.8e-05 Score=63.84 Aligned_cols=89 Identities=12% Similarity=-0.013 Sum_probs=39.5
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHh
Q 043440 209 QALCRKPNLKVACGLVKEMRDMGRVPS---RVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMN---LVVATSLMKGYYK 282 (850)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 282 (850)
..+...|++++|...|+++.+..+... .++..++.++.+.|++++|+..|+++++..+. + ..++..+..++.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHH
Confidence 333444444444444444444333322 14444444444445555555544444443211 1 3334444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 043440 283 QGDLSSALELLDKIKE 298 (850)
Q Consensus 283 ~g~~~~A~~~~~~~~~ 298 (850)
.|++++|...|+++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=7e-05 Score=63.76 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 043440 239 TNLIGACVKHGNLTEAFRLKDEMMSCGKPMNL---VVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN--KVTFAVLIE 313 (850)
Q Consensus 239 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 313 (850)
..++..+...|++++|...|+.+++..+. +. ..+..+..++.+.|++++|...|+++.+..+... ...+..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 33444444555555555555544443211 11 2344444444444444444444444444311100 233344444
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 043440 314 GCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 314 ~~~~~g~~~~A~~~~~~~~~ 333 (850)
++...|++++|...|+.+++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=4.1e-06 Score=70.23 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 667 EGKLLTASNLYSEMLSKG--IEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAF 744 (850)
Q Consensus 667 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 744 (850)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|++.|+++++.. +.+..++..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 567777777777777642 12234567777778888888888888888887743 225777788888888888888888
Q ss_pred HHHHHHHHCCC
Q 043440 745 RLHNEMLDKGL 755 (850)
Q Consensus 745 ~~~~~~~~~g~ 755 (850)
..+++.++..+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88888776543
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=8.2e-05 Score=64.13 Aligned_cols=112 Identities=11% Similarity=-0.100 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 043440 633 GNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYG----KGQLENA 708 (850)
Q Consensus 633 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 708 (850)
+++++|++.|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34667777777777766 33333 5556666666777777777777653 55666677777766 6777888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 043440 709 RKIFDEMNRKCLTPNVFIFNTLIAGYFK----EGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 709 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 755 (850)
.+.|++..+.| ++.++..|...|.. .+++++|+.+|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888777754 56777777777777 7788888888888877663
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.3e-05 Score=71.66 Aligned_cols=132 Identities=16% Similarity=0.088 Sum_probs=76.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 043440 586 AYGSLINGFCRRRDMESACKLFAELLEVGLS-PN----TVVYNSMINGFRNLGNMEAALDMHRKMIND----GIPC-DLQ 655 (850)
Q Consensus 586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 655 (850)
++..+...|...|++++|...+.+..+.... ++ ..++..+...+...|++++|+..++++.+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555555555555554432100 01 134555666666777777777777666543 1011 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 656 TYTTLIAGLLEEGKLLTASNLYSEMLSK----GIEP-DIITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
++..+...+...|++++|.+.+++.++. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777777777777777776642 1111 123566677777788888888888877664
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=2.9e-05 Score=83.02 Aligned_cols=124 Identities=14% Similarity=-0.026 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043440 270 LVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN--------------KVTFAVLIEGCCTNGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (850)
...|..+...+.+.|++++|+..|++.++..+... ...|..+..+|.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555666666666666666666666655311111 3445555555555555555555555555543
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 043440 336 IKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEAC 394 (850)
Q Consensus 336 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 394 (850)
+.+...+..+..+|...|++++|+..|+++++..|.+..++..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455555555555555555555555555555555555555555555555555443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=2.9e-05 Score=80.08 Aligned_cols=137 Identities=11% Similarity=-0.036 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043440 621 VYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLY 700 (850)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 700 (850)
.+..+...+.+.|++++|+..|+++++.- +... .....+++ .+. .+.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~-------~~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADG-------AKL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHH-------GGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHH-------HHH-HHHHHHHHHHHHHHHH
Confidence 35556666777777777777777766520 0000 00001110 000 0112335555555566
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhcCCchHHhh
Q 043440 701 GKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWARKK 779 (850)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 779 (850)
+.|++++|++.++++++.. +.+..+|..++.+|...|++++|+..|+++++..+. +...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665532 114555666666666666666666666666554332 4444555555555555555544
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=7.3e-06 Score=88.02 Aligned_cols=120 Identities=12% Similarity=0.038 Sum_probs=76.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043440 626 INGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQL 705 (850)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 705 (850)
+..+.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|++.++++++.. +.+...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 334556677777777777776664 4556777777777777777777777777777642 33456677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043440 706 ENARKIFDEMNRKCLTPNVFIFNTLIAG--YFKEGNLQEAFRLHN 748 (850)
Q Consensus 706 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 748 (850)
++|.+.|+++++... .+..++..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777766421 134455555555 677777777777777
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=3.5e-05 Score=68.93 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 689 IITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
...|..+..+|.+.|++++|+..++++++.+ +.+..+|..++.+|...|++++|+..|++.++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4466667777777777777777777777642 1256667777777777777777777777777643
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=5.7e-05 Score=65.31 Aligned_cols=62 Identities=18% Similarity=0.083 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCHhHH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDS-------GIANVFTY----NDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
.|..+..++.+.|++++|+..++++++. .|.+..+| .....++...|++++|+..|++.++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5556666666666666666666666665 66677777 77777777788888888777777653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.4e-05 Score=81.60 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=77.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043440 584 ATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAG 663 (850)
Q Consensus 584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 663 (850)
...+..+...+.+.|++++|+..|.+.+... |+... +...|+.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4455666667777777777777777766642 33221 222333333332221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HHhcCCHH
Q 043440 664 LLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAG-YFKEGNLQ 741 (850)
Q Consensus 664 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~ 741 (850)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++. .| +..++..+..+ ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888742 346678888888888888888888888888774 34 45556666665 34456777
Q ss_pred HHHHHHHHHHHCC
Q 043440 742 EAFRLHNEMLDKG 754 (850)
Q Consensus 742 ~A~~~~~~~~~~g 754 (850)
++...|++|+...
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8888888887644
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.5e-05 Score=81.35 Aligned_cols=95 Identities=7% Similarity=-0.012 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HH
Q 043440 342 IVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILA-HC 420 (850)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 420 (850)
.+..+..+|.+.|++++|+..++++++..|.+..+|..+..+|...|++++|+..|++.++.... +...+..+... ..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555443211 22223333222 12
Q ss_pred hcCCHHHHHHHHHHHHh
Q 043440 421 TVKNMDEAYSVFSEMLE 437 (850)
Q Consensus 421 ~~g~~~~A~~~~~~~~~ 437 (850)
..+..+.+...|..+..
T Consensus 311 ~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 23444455555555544
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=4.8e-05 Score=78.43 Aligned_cols=120 Identities=8% Similarity=-0.014 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC---------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043440 273 ATSLMKGYYKQGDLSSALELLDKIKEDG---------------LSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIK 337 (850)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 337 (850)
+..+...+.+.|++++|+..|++.++.- .+.+...|..+..++.+.|++++|+..++++++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4445555555555555555555554310 01123344444555555555555555555555432 1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043440 338 PSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEA 393 (850)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 393 (850)
.+...+..+..+|...|++++|+..|+++++..|.+..++..+...+...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23444444455555555555555555555555444444444444444444444433
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=1.6e-05 Score=85.37 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=60.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 043440 278 KGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLE 357 (850)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 357 (850)
..+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++.++.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 33445555555555555555531 2234455555555555555555555555555542 223445555555555556666
Q ss_pred HHHHHHHHHHHCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHH
Q 043440 358 EAYKLFDEAVDSGIANVFTYNDLLAW--LCKRGKVSEACNLWQ 398 (850)
Q Consensus 358 ~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 398 (850)
+|++.|+++++..|.+..++..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666555555444445444444 555566666666555
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=6.5e-05 Score=67.15 Aligned_cols=64 Identities=14% Similarity=0.001 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 340 VFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
...+..+..+|.+.|++++|+..++++++..|.+..+|..++.+|...|++++|+..|++.+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4566677777777888888888888888777777778888888888888888888888877765
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.98 E-value=2.7e-05 Score=82.79 Aligned_cols=125 Identities=10% Similarity=-0.005 Sum_probs=89.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHH
Q 043440 628 GFRNLGNMEAALDMHRKMIND-----G--IPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLS-----KG-IEPD-IITYT 693 (850)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~~~-~~~~~ 693 (850)
.+...|++++|+.++++.++. | .+....+++.|+..|...|++++|..+++++++ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888777653 2 111235788888888888888888888888775 12 1122 34788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 694 VLINGLYGKGQLENARKIFDEMNR-----KCLT-P-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
.|...|...|++++|..++++.++ .|.. | ...+.+.+..++...|++++|..+|+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999998888764 2321 2 234466777888899999999999999875
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.3e-05 Score=67.10 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred cCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043440 318 NGKVEKGYELYTQMKHMGI--KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACN 395 (850)
Q Consensus 318 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 395 (850)
.|++++|+..|++.++.+. +.+...+..+...|...|++++|+..|+++++..|.+..++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555555321 12234455555566666666666666666666666556666666666666666666666
Q ss_pred HHHHHHhC
Q 043440 396 LWQKMVSS 403 (850)
Q Consensus 396 ~~~~~~~~ 403 (850)
.|++.+..
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665554
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=0.00037 Score=59.98 Aligned_cols=111 Identities=15% Similarity=0.046 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 043440 598 RDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLE----EGKLLTA 673 (850)
Q Consensus 598 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 673 (850)
+++++|.+.|++..+.|. |+.. |...|...+.+++|+++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 355666666666666652 2222 5555656666666777777776654 45666666666666 6677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 043440 674 SNLYSEMLSKGIEPDIITYTVLINGLYG----KGQLENARKIFDEMNRKC 719 (850)
Q Consensus 674 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 719 (850)
.++|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776653 45566666666666 667777777777777654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=2.1e-05 Score=64.97 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 657 YTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
+..+...+...|++++|++.++++++.. +.+...+..+..++.+.|++++|++.+++.++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444444321 22333444444444444444444444444444
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.00011 Score=78.22 Aligned_cols=124 Identities=11% Similarity=0.016 Sum_probs=82.6
Q ss_pred HHccCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHH
Q 043440 594 FCRRRDMESACKLFAELLEV-----GL-SPN-TVVYNSMINGFRNLGNMEAALDMHRKMIND-----G--IPCDLQTYTT 659 (850)
Q Consensus 594 ~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~ 659 (850)
+...|++++|..++++.++. |. .|+ ..+++.|+.+|...|++++|+.+++++++. | .|....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667777777777766543 11 111 346777778888888888888877776643 2 1223356788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043440 660 LIAGLLEEGKLLTASNLYSEMLS-----KGIE-PD-IITYTVLINGLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~~~~-----~g~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (850)
|+..|...|++++|..+++++++ .|.. |+ ..+.+.+..++...|.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888765 2311 11 22455666777788888888888888765
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=7.4e-05 Score=64.41 Aligned_cols=83 Identities=6% Similarity=-0.027 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043440 598 RDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGN----------MEAALDMHRKMINDGIPCDLQTYTTLIAGLLEE 667 (850)
Q Consensus 598 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 667 (850)
+.+++|++.++..++..+. +...|..+..++...++ +++|+..|+++++.+ |.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3445555555555544322 44445444444444443 345566666555554 44555555555555544
Q ss_pred C-----------CHHHHHHHHHHHHH
Q 043440 668 G-----------KLLTASNLYSEMLS 682 (850)
Q Consensus 668 g-----------~~~~A~~~~~~~~~ 682 (850)
| ++++|++.|+++++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH
Confidence 3 45555555555554
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.71 E-value=6.9e-05 Score=64.62 Aligned_cols=112 Identities=18% Similarity=0.152 Sum_probs=66.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043440 630 RNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENAR 709 (850)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 709 (850)
.+.+.+++|+..+++.++.+ |.+...|..+..++...++++.+....+ .+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHH
Confidence 34556777888888777775 6677777777777777665542222111 245666
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhc
Q 043440 710 KIFDEMNRKCLTP-NVFIFNTLIAGYFKEG-----------NLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSR 771 (850)
Q Consensus 710 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 771 (850)
..|++.++. .| +..+|..++.+|...| ++++|++.|+++++ +.|+...|..-+...-+
T Consensus 67 ~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 67 TKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 666666652 33 4555666666665553 66777777777666 34555555554444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00014 Score=59.83 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHH
Q 043440 688 DIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVP-D----DTTY 762 (850)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~----~~~~ 762 (850)
+...+..+...+...|++++|++.|++.++.. +.+..+|..++.+|...|++++|+..++++++..+.. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45678889999999999999999999999853 2378889999999999999999999999999865431 1 4556
Q ss_pred HHHHhhhhcCCchHHhh
Q 043440 763 DILVNGKSRSDTWARKK 779 (850)
Q Consensus 763 ~~l~~~~~~~g~~~~a~ 779 (850)
..+..++...|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHhHhhhH
Confidence 66666776666665554
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.65 E-value=0.00019 Score=59.56 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043440 654 LQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEM 715 (850)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (850)
...+..+...|...|++++|+..++++++.. +.+...|..+..++...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444444444444433321 112333333333344444444444444433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00045 Score=54.10 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHH
Q 043440 308 FAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWL 384 (850)
Q Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (850)
+..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|+..|+++++..|.+..++..+...+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3333344444444444444444443322 112333344444444444444444444444444444444444444433
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00039 Score=57.63 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 254 AFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
|+..|++.++..+ .+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.++
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444322 244445555555555555555555555554432 12334444444455555555555555544443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.55 E-value=0.00066 Score=53.14 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 622 YNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLS 682 (850)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 682 (850)
+..+...+...|++++|+..|++.++.. +.+..++..+..++...|++++|...+++.++
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444444332 23333444444444444444444444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.31 E-value=0.0011 Score=53.20 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=40.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 339 SVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
+...+..+...|...|++++|+..|+++++..|.+..+|..+..+|...|++++|+..|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555666666666666666666666666665566666666666666666666666666553
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.28 E-value=0.0044 Score=61.68 Aligned_cols=82 Identities=16% Similarity=0.057 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043440 686 EPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDIL 765 (850)
Q Consensus 686 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 765 (850)
+.+..+|..+...+...|++++|...+++++..+ |+...|..++.++...|++++|.+.|+++... .|...||.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5577788888877777899999999999999854 78888888899999999999999999999875 4566665554
Q ss_pred Hhhhhc
Q 043440 766 VNGKSR 771 (850)
Q Consensus 766 ~~~~~~ 771 (850)
-+.-..
T Consensus 350 ~~l~F~ 355 (372)
T 3ly7_A 350 ENGIFQ 355 (372)
T ss_dssp HHSSSC
T ss_pred hCceee
Confidence 444333
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0012 Score=52.85 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 269 NLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
+...+..+...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666666666666666654222 344556666666666666666666665554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0059 Score=60.79 Aligned_cols=74 Identities=15% Similarity=0.050 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043440 651 PCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFN 728 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 728 (850)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|+++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 6677888888777777799999999999999854 7877888888888899999999999999888 457666653
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0017 Score=67.75 Aligned_cols=85 Identities=8% Similarity=-0.061 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHH
Q 043440 632 LGNMEAALDMHRKMIND-----G--IPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLS-----KG-IEPD-IITYTVLIN 697 (850)
Q Consensus 632 ~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~~~-~~~~~~l~~ 697 (850)
.|++++|+.++++.++. | .+....+++.|+.+|...|++++|..+++++++ .| -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665542 1 011124555666666666666666666665553 11 0111 224444555
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 043440 698 GLYGKGQLENARKIFDEMN 716 (850)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~ 716 (850)
.|...|++++|..++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5555555555555554443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.002 Score=67.13 Aligned_cols=87 Identities=10% Similarity=-0.055 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHH
Q 043440 666 EEGKLLTASNLYSEMLSK---GIEPD----IITYTVLINGLYGKGQLENARKIFDEMNR-----KCL-TPN-VFIFNTLI 731 (850)
Q Consensus 666 ~~g~~~~A~~~~~~~~~~---g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~ 731 (850)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..+++++++ .|. .|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 458899999999998762 12233 34789999999999999999999999875 231 222 44599999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043440 732 AGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 732 ~~~~~~g~~~~A~~~~~~~~~ 752 (850)
..|...|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999874
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.83 E-value=0.11 Score=49.34 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-C
Q 043440 670 LLTASNLYSEMLSKGIEPD---IITYTVLINGLYGK-----GQLENARKIFDEMNRKCLTP--NVFIFNTLIAGYFKE-G 738 (850)
Q Consensus 670 ~~~A~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 738 (850)
..+|...++++++ +.|+ ...|..+...|.+. |+.++|.++|++.++ +.| +..++..++..++.. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5678888888888 5676 55888899889884 999999999999999 456 488888999999885 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 043440 739 NLQEAFRLHNEMLDKGLV--PDDTTYDI 764 (850)
Q Consensus 739 ~~~~A~~~~~~~~~~g~~--p~~~~~~~ 764 (850)
+.++|.+++++.+...+. |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999999998777 66444433
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.80 E-value=0.12 Score=49.24 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHCCCC--CHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHH
Q 043440 356 LEEAYKLFDEAVDSGIA--NVFTYNDLLAWLCKR-----GKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTV-KNMDE 427 (850)
Q Consensus 356 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 427 (850)
...|...++++++.+|. +..+|..++..|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56777777777777774 666788888888773 78888888888877764432355666667777764 77788
Q ss_pred HHHHHHHHHhCCCC
Q 043440 428 AYSVFSEMLEKRVT 441 (850)
Q Consensus 428 A~~~~~~~~~~~~~ 441 (850)
+.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888887776544
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.78 E-value=0.0058 Score=63.88 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHH
Q 043440 629 FRNLGNMEAALDMHRKMINDG---IPC----DLQTYTTLIAGLLEEGKLLTASNLYSEMLS-----KG-IEPD-IITYTV 694 (850)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~~~-~~~~~~ 694 (850)
+.+.|++++|+.++++.++.. +.| ...+++.|+..|...|++++|+.+++++++ .| ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666665430 111 123455555566666666666666555543 11 0111 224444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 043440 695 LINGLYGKGQLENARKIFDEMN 716 (850)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~ 716 (850)
|...|...|++++|..+++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5555555555555555555443
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.76 E-value=0.0098 Score=46.39 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043440 686 EPDIITYTVLINGLYGKGQ---LENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGL 755 (850)
Q Consensus 686 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 755 (850)
+.+...+..+..++...++ .++|..++++.++. .| ++.++..++..+.+.|++++|+..|+++++..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4466667777776654444 67888888888774 34 667777778888888888888888888877543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.0057 Score=63.91 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CC-CC-CHHH
Q 043440 661 IAGLLEEGKLLTASNLYSEMLSK---GIEPD----IITYTVLINGLYGKGQLENARKIFDEMNRK-----CL-TP-NVFI 726 (850)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~~~~~---g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~ 726 (850)
+..+...|++++|+.++++.++. -+.|+ ..+++.|+.+|...|++++|..+++++++. |. .| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999999999863 12233 347888999999999999999999988752 21 12 2445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 727 FNTLIAGYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 752 (850)
++.|+..|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999999864
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.70 E-value=0.004 Score=49.54 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 347 LCGFLKAQLLEEAYKLFDEAVDSGIANVF-TYNDLLAWLCKRGKVSEACNLWQKMVSS 403 (850)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 403 (850)
...+.+.|++++|+..|+++++..|.+.. ++..++..|...|++++|+..|++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555666666666666655555555 5666666666666666666666665554
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.68 E-value=0.0099 Score=46.37 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=52.6
Q ss_pred CCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 337 KPSVFIVNSLLCGFLKAQL---LEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSG 404 (850)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 404 (850)
+.+...+..+..++...++ .++|..+|+++++.+|.++.+...++..+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3456666666666654433 6888888888888888888888888888888888888888888888764
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.66 E-value=0.004 Score=49.52 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=25.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 278 KGYYKQGDLSSALELLDKIKEDGLSPNKV-TFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
..+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|++.|++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555555544431 11233 444444444444444444444444444
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.56 E-value=0.0062 Score=51.81 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhHHHHH
Q 043440 218 KVACGLVKEMRDMGRVPSR-VYTNLIGACVKHG---NLTEAFRLKDEMMSCG-KPMNLVVATSLMKGYYKQGDLSSALEL 292 (850)
Q Consensus 218 ~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 292 (850)
..+.+.|.+..+.+. ++. +...++.++++.+ ++++++.+|++..+.+ +..+...+..+.-++.+.|++++|++.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344445555555444 233 6666666666666 4456666666666543 111344555566666666666666666
Q ss_pred HHHHHH
Q 043440 293 LDKIKE 298 (850)
Q Consensus 293 ~~~~~~ 298 (850)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666666
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.012 Score=50.14 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 043440 671 LTASNLYSEMLSKGIEPDIITYTVLINGLYGKG---QLENARKIFDEMNRKCLTP--NVFIFNTLIAGYFKEGNLQEAFR 745 (850)
Q Consensus 671 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 745 (850)
..+.+.|.+..+.| .++..+...+.+++++.+ ++++++.+|++..+.+ .| +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555544 356666666777777766 5557777777776643 23 34556666667777777777777
Q ss_pred HHHHHHHC
Q 043440 746 LHNEMLDK 753 (850)
Q Consensus 746 ~~~~~~~~ 753 (850)
+++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777763
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.51 E-value=1.3e-06 Score=87.56 Aligned_cols=265 Identities=13% Similarity=0.069 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043440 94 LDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMM 173 (850)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (850)
..+.+|+.|++++.+.|+..+|++.|-++ . |...|..++.+..+.|.+++-.+++...++..- ++..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--S----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--C----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 44567999999999999999998876432 1 333566788888889999998888877665532 444456788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHH
Q 043440 174 RACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTE 253 (850)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 253 (850)
-+|++.++..+-.+++. .||..-...+..-|...|.++.|.-+|..+. -|..|+..+.+.|++..
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is--------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC--------CCTTTSSSSSSCSGGGS
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHH
Confidence 88899888776544432 3566566778888888899988888775432 24444555556666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 254 AFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 254 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
|.+.-++ ..++.+|..+-.+|...+++.-|.-.--.++- .|| ....++..|-..|.+++-+.+++.-+.
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 6543322 13455666666666666666665554444331 222 122344555666666666666665542
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCC-------CCHhHHHHHHHHHHhcCCHHHHH
Q 043440 334 MGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAV-DSGI-------ANVFTYNDLLAWLCKRGKVSEAC 394 (850)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~~~~~~~~l~~~~~~~g~~~~A~ 394 (850)
.. ......++-|.-.|++-. .++-.+.++..- +.+. .....|.-++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 21 234455555555555442 122222221110 0111 13345666666666666666654
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.026 Score=45.27 Aligned_cols=68 Identities=10% Similarity=-0.032 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043440 94 LDSGVFSYLLRSYVRADRINDAVDCCNGMIERD------IIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKG 161 (850)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 161 (850)
.+..-+..|+..+.+.|++..|+..|+.+.+.. ..+...++..++.++.+.|+++.|..++++.....
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 456667889999999999999999998876532 22345678888888888899999988888887763
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.27 E-value=2.7e-07 Score=92.44 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=104.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCC 316 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (850)
+|..|+.+....+++.+|++.|-+ . .|+..|..+|....+.|.+++-.+.+.-.++..- ++..=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 555566665555555555544321 1 1333455555555566666666655555444322 2223335555666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043440 317 TNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNL 396 (850)
Q Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 396 (850)
+.++..+-.+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|.+.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN--------~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC--------CTTTSSSSSSCSGGGSSTTT
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHHHH
Confidence 665554332221 124544555555666666666655555543322 33344444555555555443
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 397 WQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKIS 476 (850)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 476 (850)
-++. -++.||-.+-.+|...+.+.-|.-.--.++-. +| -...++..|-..|.+++-+.+++.-.... .
T Consensus 193 ArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 193 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp TTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 2221 14445665556666655555444333333221 11 11223444555566666555555554221 2
Q ss_pred CChhhHHHHHHHHHH
Q 043440 477 PTDYTSNIIINGLCK 491 (850)
Q Consensus 477 ~~~~~~~~l~~~~~~ 491 (850)
.....++-|.-.|++
T Consensus 261 AHmGmFTELaILYsK 275 (624)
T 3lvg_A 261 AHMGMFTELAILYSK 275 (624)
T ss_dssp CCHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHh
Confidence 334445555544444
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.93 E-value=3.1 Score=47.10 Aligned_cols=264 Identities=12% Similarity=0.080 Sum_probs=133.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CChhhHHHHHHH
Q 043440 418 AHCTVKNMDEAYSVFSEMLEKR--VTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKI--S-----PTDYTSNIIING 488 (850)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-----~~~~~~~~l~~~ 488 (850)
+....|+.++++.++...+..+ -.+....-..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3445677777777776655421 111223333444455566655567776666554210 0 111111222223
Q ss_pred HHHcCC-hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHcC
Q 043440 489 LCKAGR-TSVAWDKLKKMVEKGFIPKC--LTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILI--NGFCRKN 563 (850)
Q Consensus 489 ~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g 563 (850)
+...|. -+++.+.+..++...- +.. ..-.+|...+.-.|+.+....++..+.+.. +..+...+. -++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333333 2456666666665321 111 111223344556677766677777666532 333333333 3344567
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhh-HH---HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043440 564 EIDLALKMRNEMMNEGLQLDATA-YG---SLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAAL 639 (850)
Q Consensus 564 ~~~~A~~~~~~~~~~~~~~~~~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 639 (850)
+.+.+..+.+.+... .++.. |. ++.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 777777777777653 12222 22 3445677788877777788877764 2223333333333444566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHH
Q 043440 640 DMHRKMINDGIPCDLQTYTTLIAGLLEEGKL-LTASNLYSEMLSKGIEPDIITYT 693 (850)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~ 693 (850)
++++.+.+.+ .|....-..+.-+....|.. .+++.++..+.. .+|..+-.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHH
Confidence 6666555544 44444444444444444443 567778877764 45555443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.75 E-value=0.078 Score=42.36 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHh
Q 043440 341 FIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVF 375 (850)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (850)
.++..|..++.+.|+++.|+..++++++..|.+..
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 34444444455555555555555555544443333
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.58 E-value=0.33 Score=56.09 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=92.8
Q ss_pred HHHhcCChhHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043440 105 SYVRADRINDAVD-CCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTE 183 (850)
Q Consensus 105 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (850)
.....+++++|.+ ++..+ ++......++..+.+.|..++|..+.+.-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3346788888876 44211 101223667777788888888876653211 1122345678888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 184 EAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
+|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. +..+...|...|+.+...++.+....
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 888875432 3678888999999999999999888887654 44555555666666655555444444
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 264 CGKPMNLVVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 264 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
.|. ++.....|.+.|++++|++++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 321 122233344555666555555443
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.42 E-value=0.46 Score=54.87 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=87.9
Q ss_pred hcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043440 282 KQGDLSSALE-LLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAY 360 (850)
Q Consensus 282 ~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (850)
..+++++|.+ ++..+ + +......++..+.+.|..+.|.++.+. .. .-.......|++++|.
T Consensus 611 ~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHH
Confidence 4677777765 44221 1 112235666667777777777765421 11 1133445678888888
Q ss_pred HHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043440 361 KLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRV 440 (850)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 440 (850)
++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+.....|.
T Consensus 673 ~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 673 DLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 775433 4677888888888888888888888887653 34455555556666665555544444321
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 441 TPNVVTYSVLIDGYFKQGDAERAFDVLDQ 469 (850)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (850)
++.....|.+.|++++|++++.+
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22233345555666666655543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.36 E-value=1.3 Score=38.73 Aligned_cols=101 Identities=11% Similarity=0.148 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043440 349 GFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEA 428 (850)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 428 (850)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 345667777777766554 3566777777777777777777777776542 33444445556666665
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 043440 429 YSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQ 469 (850)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (850)
.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444432 134444455566777777776644
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.26 E-value=1.2 Score=38.94 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 247 KHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 247 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
..|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555555554443 24445555555555555555555555554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.17 E-value=0.59 Score=39.10 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHC
Q 043440 268 MNLVVATSLMKGYYKQGDL------SSALELLDKIKEDGLSPNKV-TFAVLIE------GCCTNGKVEKGYELYTQMKHM 334 (850)
Q Consensus 268 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 334 (850)
.|..+|-..+...-+.|+. ++-+++|++.... ++|+.. .|...+. .+...++.++|+++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566666666666666666 6666667666654 444321 0111110 112235666666666666543
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCH
Q 043440 335 GIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANV 374 (850)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (850)
.+.=...|......-.++|+++.|++++.+++..++.+.
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 111134444444444555666666666666655555333
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.07 E-value=0.091 Score=42.85 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043440 670 LLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLEN---ARKIFDEMNRKCLTP--NVFIFNTLIAGYFKEGNLQEAF 744 (850)
Q Consensus 670 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 744 (850)
+..+.+-|.+....| .++..+-..+.+++.++.+..+ ++.+++.+.+.+ .| .....-.|+-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444555554444 2566666667777777666554 777777776643 12 3344556666777788888888
Q ss_pred HHHHHHHHC
Q 043440 745 RLHNEMLDK 753 (850)
Q Consensus 745 ~~~~~~~~~ 753 (850)
++++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887777763
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.02 E-value=0.29 Score=40.95 Aligned_cols=112 Identities=16% Similarity=0.250 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhCCCHHHHHHHHHHHHh
Q 043440 651 PCDLQTYTTLIAGLLEEGKL------LTASNLYSEMLSKGIEPDII-TYTVLIN------GLYGKGQLENARKIFDEMNR 717 (850)
Q Consensus 651 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 717 (850)
+.|..+|-..+....+.|+. ++..++|++++.. ++|+.. .|...+. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33455555555555555555 5555666666653 444321 0111100 11234788999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043440 718 KCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDI 764 (850)
Q Consensus 718 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 764 (850)
.+-. =...|...+.--.++|+...|.+++.+.+..+++|....-..
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 4222 267788888888889999999999999998888865443333
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.91 E-value=1.3 Score=36.20 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043440 410 VSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKI 475 (850)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 475 (850)
......+..+...|+-++-.+++..++.. .+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555566666666666666665442 345566666666666666666666666666666654
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.83 E-value=7 Score=44.33 Aligned_cols=312 Identities=12% Similarity=0.070 Sum_probs=171.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHHcCChhHHHHHHHHHHHCCC-------CCCHHHHHHHH
Q 043440 451 IDGYFKQGDAERAFDVLDQMENAKISPTDY--TSNIIINGLCKAGRTSVAWDKLKKMVEKGF-------IPKCLTYNSII 521 (850)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~ 521 (850)
.-+....|+.++++.++......+...+.. .-..+.-++...|..+++.+++...+...- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 345667888888888887665421112222 223344456667777788888887765421 01112222333
Q ss_pred HHHhcCCC-hHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHH--HHH
Q 043440 522 DGFVKEDD-MISALTVYREMHESGLSPNVVT--YT--ILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLI--NGF 594 (850)
Q Consensus 522 ~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~ 594 (850)
-+.+-.|. -+++.+.+..++... +..+ .. .+...+.-.|+.+....++..+.+.. +......++ -++
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 33333342 356667777666542 2221 22 33334455677777788888777642 223333333 344
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043440 595 CRRRDMESACKLFAELLEVGLSPNTVVY--NSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLT 672 (850)
Q Consensus 595 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 672 (850)
...|+.+.+..+.+.+... ..|....- .++.-+|+..|+.....++++.+.... ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 5778888888888887764 22222222 234556788999877777888888752 3344444444445555677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcC-------CHHH
Q 043440 673 ASNLYSEMLSKGIEPDIITYTVLINGLYGKGQL-ENARKIFDEMNRKCLTPNVFIFNTLIAG--YFKEG-------NLQE 742 (850)
Q Consensus 673 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g-------~~~~ 742 (850)
+.++++.+.+.+ .|....-..+.-+....|.. .+|++.+..+... ++..+-..-+-+ ..-.| +...
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 777777666543 34333333444444455553 6889999999753 444443333333 33333 3444
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHhhhhcCCc
Q 043440 743 AFRLHNEMLDK-GLVPDDTTYDILVNGKSRSDT 774 (850)
Q Consensus 743 A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~ 774 (850)
-++.+...... .-.|+...-..+..|..+.|.
T Consensus 689 ~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 689 INKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 44444444432 223445555567777776664
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.80 E-value=0.071 Score=43.47 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 219 VACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTE---AFRLKDEMMSCGKP-MNLVVATSLMKGYYKQGDLSSALELL 293 (850)
Q Consensus 219 ~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (850)
.+.+.|.+....|. ++. +...++.++.+..+..+ ++.+++.+.+.+.+ ........|.-++.+.|++++|++.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444444333 333 66666666666665544 66667666664311 23344555666666777777777777
Q ss_pred HHHHH
Q 043440 294 DKIKE 298 (850)
Q Consensus 294 ~~~~~ 298 (850)
+.+++
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77666
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.40 E-value=1.7 Score=35.45 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043440 688 DIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLV 756 (850)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 756 (850)
+....+..++.+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344555666677777887777777777544 24567777788888888888888888888888887764
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.84 E-value=3.4 Score=34.33 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 686 EPDIITYTVLINGLYGKGQ---LENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 686 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
.|+..+--.+.+++.++.+ ..+++.+++.+.+.+..-.....-.|+-++.+.|++++|.++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4666666677777777665 44677788777764322234445566778888888888888888888743
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.82 E-value=1.4 Score=36.11 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=37.1
Q ss_pred CCCh-hHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 233 VPSR-VYTNLIGACVKHGNL---TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 233 ~~~~-~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
.|+. +-..++.++.+..+. .+++.+++++.+.++......+..|.-++.+.|++++|++..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444 555555556555543 34566666665544322344555566666666666666666666665
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.78 E-value=1.6 Score=35.67 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043440 685 IEPDIITYTVLINGLYGKGQ---LENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKG 754 (850)
Q Consensus 685 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 754 (850)
-.|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-....+-.|+-++.+.|++++|.++.+.+++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 35666666677777777765 44688888888765421235556677778888888888888888888743
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.58 E-value=13 Score=37.81 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 043440 172 MMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMR 228 (850)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 228 (850)
++..+...|++++|...+..+....+ .++..|..++.++.+.|+..+|++.|+++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445556666666665555554432 255566666666666666666666665543
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.41 E-value=3.5 Score=34.25 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNL---TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKE 298 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 298 (850)
+...++.++.+..+. .+++.+++.+.+.++.........|.-++.+.|++++|++..+.+++
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 566666666666543 35666666666544333444555566666677777777777666666
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.91 E-value=2.3 Score=47.11 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=43.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMV 401 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 401 (850)
..+...|+++.|+++-+++....|.+-.+|..|...|...|+++.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567888888888888888888888888888888888888888888777764
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.98 Score=50.06 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=31.5
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 699 LYGKGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEM 750 (850)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (850)
|...|+++-|+++.++.+.. .| +..+|..|+.+|...|+++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44556666666666666652 33 5666666666666666666666666665
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.12 E-value=15 Score=35.95 Aligned_cols=82 Identities=9% Similarity=0.019 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 043440 372 ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLI 451 (850)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 451 (850)
.++.....+...|.+.+++.+|...|- . |..+....+..++..+...+...+ ++...-. .+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaR-aV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCAR-AV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHH-HH
Confidence 688888889999999999988888773 2 333333566555544443332111 1222222 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 043440 452 DGYFKQGDAERAFDVLDQMEN 472 (850)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~~ 472 (850)
-.|...++...|..+++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 345567778888776665543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.70 E-value=16 Score=35.55 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=45.6
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHhHH
Q 043440 372 ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTV---KNMDEAYSVFSEMLEKRVTPNVVTYS 448 (850)
Q Consensus 372 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 448 (850)
.++..+..++..|.+.|++.+|...|-.- -.-|...+..++.-+... |...++ +... .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~-~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFF-S 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHH-H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHH-H
Confidence 67888888888888888888888766411 111344455554444333 332221 1111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 043440 449 VLIDGYFKQGDAERAFDVLDQME 471 (850)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~ 471 (850)
..+-.|...|+...|..+|+...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 11223556677788877777654
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.62 E-value=21 Score=37.02 Aligned_cols=96 Identities=14% Similarity=0.000 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcC---HhhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCC--HH
Q 043440 552 YTILINGFCRKNEIDLALKMRNEMMNE--GLQLD---ATAYGSLINGFCRRRDMESACKLFAELLE----VGLSPN--TV 620 (850)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~ 620 (850)
...|...+...|++.+|.+++..+... +.... ...+...+..|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677778888888888888887642 21111 23455566778888888888888877642 222222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 621 VYNSMINGFRNLGNMEAALDMHRKMIN 647 (850)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (850)
.+...+..+...+++.+|...|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455666677778888888887777765
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.38 E-value=11 Score=44.92 Aligned_cols=166 Identities=10% Similarity=0.013 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCC
Q 043440 171 VMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGN 250 (850)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 250 (850)
.++..+...+.++.+.++..... .++...-.++.++...|++++|.+.|++... ++...... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l---------~~~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ---------FAV 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS---------CSS
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh---------hhh
Confidence 46666778888888877654432 2555555667788899999999999987643 12111100 000
Q ss_pred HHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHH
Q 043440 251 LTEAFRLKDEMMSCG--KPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNK----VTFAVLIEGCCTNGKVEKG 324 (850)
Q Consensus 251 ~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 324 (850)
... +..+.... ...-..-|..++..+.+.|.++.+.++-....+.....+. ..|..+...+...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 001 11111110 1112334566777777777777777777666553221111 2467777788888888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 043440 325 YELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLE 357 (850)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 357 (850)
...+-.+...... ......|+...|..|..+
T Consensus 958 y~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 958 HVALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp GHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 7777776654332 344556666666665543
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.89 E-value=1.2 Score=38.11 Aligned_cols=125 Identities=7% Similarity=-0.013 Sum_probs=65.0
Q ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 043440 126 DIIPLL--RSMNSVLKALVRRNLIDEAKEFYNKMNLKG-LGVDS-------VTIRVMMRACLKEDTTEEAEKYFRDAKAL 195 (850)
Q Consensus 126 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (850)
|+.|.. +++..-+..+...|.++.|+.+.+-+.... ..|+. .+...+.+++..+|++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444433 345556777888889998888777654331 12331 24566777788888888888888886542
Q ss_pred C--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 196 G--VKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 196 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
. ...+..++..+. ....... .....++. +...+..+|.+.+++++|+.+++.++.
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1 110111111110 0000000 00111222 666678888888888888888777644
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.38 E-value=15 Score=43.88 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 043440 376 TYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSV----VSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLI 451 (850)
Q Consensus 376 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 451 (850)
-|..++..+.+.|.++.++++-+..++.....+. ..|..+...+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 4666777777888888888777766654222121 2467777888888888888888777765433 344566666
Q ss_pred HHHHhcCCHHH
Q 043440 452 DGYFKQGDAER 462 (850)
Q Consensus 452 ~~~~~~g~~~~ 462 (850)
...|..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 66666665443
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.15 E-value=24 Score=34.56 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=53.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCcHHHHHHHHHHHH
Q 043440 206 MVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLK----DEMMSCGKPMNLVVATSLMKGYY 281 (850)
Q Consensus 206 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~li~~~~ 281 (850)
++..-|.+.+++++|++++..-. ..+.+.|+...|.++- +-..+.+.++|......++..+.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444566667777766654322 2344455554444433 33334455555555555555554
Q ss_pred hcCChhHH-HHHHHHHHH----cC--CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 282 KQGDLSSA-LELLDKIKE----DG--LSPNKVTFAVLIEGCCTNGKVEKGYELY 328 (850)
Q Consensus 282 ~~g~~~~A-~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (850)
....-+-. ..+.+++++ .| ...|+.....+...|.+.+++.+|...|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 43321111 112222211 11 3345566666667777777777776665
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.10 E-value=2.5 Score=43.16 Aligned_cols=67 Identities=7% Similarity=0.048 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChh
Q 043440 344 NSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS-----SGVRPSVV 410 (850)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 410 (850)
..++..+...|+.++|+..+..+....|-+...|..++.++...|+..+|++.|+...+ .|+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556666777777777777777777777777777788888888888888777777643 26666554
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.87 E-value=27 Score=33.92 Aligned_cols=110 Identities=6% Similarity=-0.023 Sum_probs=59.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCcHHHHHHHHHHHH
Q 043440 206 MVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRL----KDEMMSCGKPMNLVVATSLMKGYY 281 (850)
Q Consensus 206 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~li~~~~ 281 (850)
++..-|.+++++++|++++..-. ..+.+.|+...|.++ .+-..+.+.+++......++..+.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44445666777777777765432 244555666555543 344444566666666666666554
Q ss_pred hcCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043440 282 KQGDLS-SALELLDKIKE----DG--LSPNKVTFAVLIEGCCTNGKVEKGYELYT 329 (850)
Q Consensus 282 ~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (850)
....-+ .=.++++++.+ .| ...++.....+...|.+.|++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432211 11223333322 11 22356666667777777777777766553
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.83 E-value=6.2 Score=36.97 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=79.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHhhhhcCCc
Q 043440 697 NGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD--DTTYDILVNGKSRSDT 774 (850)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~ 774 (850)
....+.|++++|++....-++.. +-|...-..|+..+|-.|+|+.|.+-++...+..+... ...|..++.+-.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~ 83 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 83 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHH
Confidence 34568899999999998888863 23888888899999999999999999999887543311 1234444433221111
Q ss_pred hHHhhccchhhhhhhhhhHHhhcCCchhhhHHHH----hhchhhhhhHHHHhHHHHhhhcCCCCCcc
Q 043440 775 WARKKEKMPACRKHHSMRIELLELPRMSNYRKVL----VRSSSQLMDQAEVRKESLRQRQNCSPVGD 837 (850)
Q Consensus 775 ~~~a~~~~~~~~~~~~~~~~~~~~p~~~~y~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 837 (850)
+=.+. ..+.....|. .....++ ....|+..++.+.+.++.+..|..+...|
T Consensus 84 vfaG~-----------~~P~~~g~~~-~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 84 FAQGA-----------ATAKVLGENE-ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HTTSC-----------CCEECCCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHcCC-----------CCCCCCCCCH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 10000 0011111111 1221121 46678899999998899998888777644
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.15 E-value=38 Score=35.09 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--Hhh
Q 043440 274 TSLMKGYYKQGDLSSALELLDKIKED--GLSPN---KVTFAVLIEGCCTNGKVEKGYELYTQMKH----MGIKPS--VFI 342 (850)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~ 342 (850)
..|...|...|++.+|.+++..+... |.... ...+...++.|...+++..|..++..+.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555666666666666666665432 11111 12344445556666666666666665432 111111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 043440 343 VNSLLCGFLKAQLLEEAYKLFDEAV 367 (850)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (850)
+...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444555556666655555543
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.34 E-value=6.2 Score=33.80 Aligned_cols=60 Identities=5% Similarity=0.034 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc-------HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCG-KPMN-------LVVATSLMKGYYKQGDLSSALELLDKI 296 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (850)
++..-+..+...|.++.|+-+.+.++... ..++ ..+...+.+++...|++.+|...|++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444444555555555555544432210 1111 123444555666666666666666664
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.15 E-value=31 Score=32.39 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcC
Q 043440 348 CGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVV----SYNNMILAHCTVK 423 (850)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 423 (850)
....+.|++++|++....-++..|.|......+++.+|-.|+++.|.+-++...+. .|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 34567899999999999999999999999999999999999999999999988875 33332 33333332
Q ss_pred CHHHHHHHHHHHHhCCCCC-----CHHhHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 043440 424 NMDEAYSVFSEMLEKRVTP-----NVVTYSVLIDGY--FKQGDAERAFDVLDQMENA 473 (850)
Q Consensus 424 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 473 (850)
+..=.++...+-.| .......++.+. ...|+.++|.++-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222233322222 122333444443 3468888888877777543
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.31 E-value=20 Score=27.35 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043440 279 GYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHM 334 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (850)
.+...|+|++|..+.+.. +.||...|..|... +.|-.+++..-+..+...
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 344556666666555554 45555555444332 445455555444444443
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.23 E-value=22 Score=27.39 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 599 DMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIA 662 (850)
Q Consensus 599 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 662 (850)
+.=+..+-++.+....+.|++....+.+.+|.+.+++.-|+++|+.+..+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444566667777777788888888888888888888888888888877652 223345655553
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.60 E-value=19 Score=27.42 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=25.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043440 279 GYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMG 335 (850)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 335 (850)
.+...|+|++|..+.+.. +.||...|..|.. .+.|-.+++..-+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344556666665555544 4555555544432 24455555555554444433
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.34 E-value=1e+02 Score=33.42 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=61.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCC---------C-
Q 043440 630 RNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSK------------GIE---------P- 687 (850)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------g~~---------~- 687 (850)
.+.|+++.|...|+.|.... .......-.+..++...|+.++|..+|+.+.+. |.+ +
T Consensus 296 lr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~ 374 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQN 374 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChh
Confidence 34566666666666655431 122333445555566666666666666655431 111 0
Q ss_pred --CHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043440 688 --DII---TYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLH 747 (850)
Q Consensus 688 --~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (850)
... .-...+..+...|....|...+..+.+. . +......+.......|.++.++...
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000 1112344567788888888888877764 2 3333445555556667776665433
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.23 E-value=48 Score=34.17 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHH--HH
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSC--GKPMNLVVATSLMKGYYKQGDLSSALELLDKIKED---GLSPNKVT--FA 309 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 309 (850)
+...++..|.+.|+++.|.+.+.++... +...-...+..++..+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6777888888888888888888877652 33334556777777777788888888777776442 22222211 01
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 043440 310 VLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
.-+..+...+++..|-+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223455667766666655543
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.56 E-value=22 Score=36.69 Aligned_cols=62 Identities=13% Similarity=-0.030 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043440 272 VATSLMKGYYKQGDLSSALELLDKIKED--GLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKH 333 (850)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (850)
++..++..|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677889999999999999999998774 2333455677788888889999999988888754
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.93 E-value=21 Score=27.27 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=31.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 043440 139 KALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALG 196 (850)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (850)
+++.++|++++|..+.+... -||...|..+.. .+.|..+++...+.++..+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34556677777766655433 567677766655 45666666666665555544
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.03 E-value=1.2e+02 Score=33.01 Aligned_cols=386 Identities=10% Similarity=0.015 Sum_probs=204.3
Q ss_pred CCChHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhCCCCCCH
Q 043440 17 RNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDS 96 (850)
Q Consensus 17 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (850)
++++...++||.. .+.+...-|.++..+...|+ -.+|......+...+...+. .++.++......|. .+.
T Consensus 85 ~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~-~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~g~-lt~ 154 (618)
T 1qsa_A 85 REDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQ-SEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGK-QDP 154 (618)
T ss_dssp TTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTC-SCH
T ss_pred CCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHCCC-CCH
Confidence 6777777776643 13577888888889988885 77888888888765433222 23445554444444 333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHH
Q 043440 97 GVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLR-SMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVT---IRVM 172 (850)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l 172 (850)
...-.-++.....|+...|..+...+ .++.. ....++..+.+ ...+...... . .++... +...
T Consensus 155 ~~~~~R~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---~--~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 155 LAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---T--GATDFTRQMAAVA 221 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc---c--CCChhhHHHHHHH
Confidence 33333446666778887777665432 12222 22333333322 2222222211 1 222222 1222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH----HHHHHHcCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 043440 173 MRACLKEDTTEEAEKYFRDAKALGVKLDARAYRM----VIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKH 248 (850)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (850)
+.-+.+. +.+.|...+....... ..+...... ++..+...+...++...+......... +......+....+.
T Consensus 222 ~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHC
Confidence 2333333 7889999998876533 223333222 333333444355666666665543221 22333444455577
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 043440 249 GNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELY 328 (850)
Q Consensus 249 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (850)
|+++.|...|+.|..... .......=+..++...|+.++|..+|..+.+ +. +|..++ +..+.|..-..
T Consensus 299 ~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~l-Aa~~Lg~~~~~---- 366 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMV-AAQRIGEEYEL---- 366 (618)
T ss_dssp TCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHH-HHHHTTCCCCC----
T ss_pred CCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHH-HHHHcCCCCCC----
Confidence 999999999988865321 2344444566777888999999999999864 12 233322 12223321000
Q ss_pred HHHHHCCCCCC---H---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 329 TQMKHMGIKPS---V---FIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVS 402 (850)
Q Consensus 329 ~~~~~~~~~~~---~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 402 (850)
....+.+. . ......+..+...|....|...+..+.+.. +......+.......|..+.++........
T Consensus 367 ---~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~~~~ 441 (618)
T 1qsa_A 367 ---KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (618)
T ss_dssp ---CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred ---CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 00000110 0 011223455678899999998888877652 334445566667778888887766544332
Q ss_pred CCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 043440 403 SGVR--PSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVV 445 (850)
Q Consensus 403 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 445 (850)
.+.. .-+..|...+....+...++..+-.---..+.++.|+..
T Consensus 442 ~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 442 WDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp TTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred hcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 2100 001245666666666655554433222223334555443
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=71.41 E-value=33 Score=26.43 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043440 322 EKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVD 368 (850)
Q Consensus 322 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (850)
-+.++-++.+...++.|++.+..+.+.+|-+.+++.-|+.+|+.+..
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555544
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.10 E-value=26 Score=31.20 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 702 KGQLENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 702 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
++...++.++|..|..+|+-- -...|...+..+...|++++|.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344556777777776665543 344466666677777777777777777766666663
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.32 E-value=28 Score=30.99 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043440 667 EGKLLTASNLYSEMLSKGIEPD-IITYTVLINGLYGKGQLENARKIFDEMNRKCLTP 722 (850)
Q Consensus 667 ~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 722 (850)
.+...++.++|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3446677778888777766554 3356666677777788888888888777766666
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.80 E-value=39 Score=27.62 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043440 600 MESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIA 662 (850)
Q Consensus 600 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 662 (850)
.=+..+-++.+...++.|++....+.+.+|.+.+++.-|+++|+-+..+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33556666777777888888888888899999999999999988887762 233445665554
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.39 E-value=33 Score=26.17 Aligned_cols=78 Identities=14% Similarity=-0.013 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 669 KLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHN 748 (850)
Q Consensus 669 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (850)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+ ..||.+.|-.|. -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34555555555554331 2222222233455667777776665444 246666665553 346666666666666
Q ss_pred HHHHCC
Q 043440 749 EMLDKG 754 (850)
Q Consensus 749 ~~~~~g 754 (850)
++-.+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665554
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.59 E-value=63 Score=26.45 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 323 KGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDS 369 (850)
Q Consensus 323 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (850)
+..+-++.+...++.|++.+....+.+|-+.+++.-|+.+|+.+...
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44555555555566666666666666666666666666666665544
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.38 E-value=53 Score=27.71 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 706 ENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 706 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
+++.++|..|..+|+-- -...|...+..+...|++++|.++|+.-++.+-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44778888887776654 455577788888888888888888888887777764
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.56 E-value=1.6e+02 Score=29.73 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=52.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHhhHHHH-
Q 043440 275 SLMKGYYKQGDLSSALELLDKIKED--GLSPN---KVTFAVLIEGCCTNGKVEKGYELYTQMKHM--GIKPSVFIVNSL- 346 (850)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l- 346 (850)
.++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++.++...+...... .+.+++.+...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677777778888887777777653 11111 123444456677778888888777766432 222333222111
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 043440 347 ---LCGFL-KAQLLEEAYKLFDEAV 367 (850)
Q Consensus 347 ---~~~~~-~~g~~~~A~~~~~~~~ 367 (850)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22344 5677777777766553
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.94 E-value=1.6e+02 Score=29.65 Aligned_cols=137 Identities=12% Similarity=0.114 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHHHHhc---CCCCCChHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043440 41 DTFCVLLHILMKDRESHRYARNLLNHYVS---GGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVD 117 (850)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~a~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 117 (850)
.+...+..++...++ .++...++..... .-+....+.++..+++.... .+.+......+.. +
T Consensus 20 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~--~~~~~~~~~~~~~------------~ 84 (394)
T 3txn_A 20 QGILQQGELYKQEGK-AKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLD--MDAGTGIEVQLCK------------D 84 (394)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTT--SCCCHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc--CCCcHHHHHHHHH------------H
Confidence 456677777777774 7777777665432 11222233444455554432 2222222211111 1
Q ss_pred HHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043440 118 CCNGMIERDIIPLLR--SMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVD-----SVTIRVMMRACLKEDTTEEAEKYFR 190 (850)
Q Consensus 118 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (850)
.++.+...... +.+ +=..++..|...|++.+|..++.++.+.--..| ...+..-+..|...+++..+...+.
T Consensus 85 ~~~~a~~~~r~-flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 85 CIEWAKQEKRT-FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 12222111000 111 123577788888888888888777754311111 1123333444555566666666555
Q ss_pred HHh
Q 043440 191 DAK 193 (850)
Q Consensus 191 ~~~ 193 (850)
...
T Consensus 164 ~a~ 166 (394)
T 3txn_A 164 SAR 166 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.60 E-value=69 Score=27.44 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 043440 706 ENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDD 759 (850)
Q Consensus 706 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 759 (850)
+++.++|..|..+||-- -...|...+..+...|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44777888888877654 4556888888888888888888888888888877754
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.66 E-value=1.5e+02 Score=26.30 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHHHhcC
Q 043440 269 NLVVATSLMKGYYKQG 284 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g 284 (850)
+...-...+.++.+.|
T Consensus 63 ~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 63 DAWVRRAAADALGQIG 78 (211)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 3333333334444444
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.90 E-value=1.1e+02 Score=31.88 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 043440 132 RSMNSVLKALVRRNLIDEAKEFYNKMNLKGL-GVD---SVTIRVMMRACLKEDTTEEAEKYFRDAKA 194 (850)
Q Consensus 132 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 194 (850)
.++|.+++.|...+.++.|..+..+..-... .+| ...+..+++.+.-+++|.+|.+.|..+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455555555555555555555555421100 011 11122344455556666666666665544
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.09 E-value=2.7e+02 Score=27.56 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 043440 169 IRVMMRACLKEDTTEEAEKYFRDAK 193 (850)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (850)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3556666777777777777777654
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.54 E-value=2.6e+02 Score=27.00 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043440 237 VYTNLIGACVKHGNLTEAFRLKDEMMSCGKP 267 (850)
Q Consensus 237 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 267 (850)
+...-+....|.+++..|..+-+++++.++.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 5556666677777888777777777776543
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.93 E-value=1.3e+02 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 043440 345 SLLCGFLKAQLLEEAYKLFDEA 366 (850)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~ 366 (850)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3445555555555555555554
No 282
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.45 E-value=1.7e+02 Score=25.80 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=20.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043440 596 RRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNL 632 (850)
Q Consensus 596 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 632 (850)
+-.+.+.|+-.+.+|++.|-.|....-..++.+....
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDI 55 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDV 55 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 3456666666666666666555544444444444333
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.57 E-value=2.5e+02 Score=27.73 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC--HHHHHHHHHHHHHcCCC
Q 043440 553 TILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRD--MESACKLFAELLEVGLS 616 (850)
Q Consensus 553 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~ 616 (850)
..++.-|...++.++|...++++...... ...+...+..++-+.++ .+...+++..+...|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 44555566666777777666666421111 12333344444444322 33455555555555443
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.00 E-value=58 Score=29.52 Aligned_cols=53 Identities=9% Similarity=0.121 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043440 706 ENARKIFDEMNRKCLTP-NVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPD 758 (850)
Q Consensus 706 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 758 (850)
+++.++|..|..+||-- -...|...+..+...|++++|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 46677777777776644 355577777777788888888888887777666663
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.01 E-value=3.8e+02 Score=28.06 Aligned_cols=63 Identities=8% Similarity=0.055 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCh----hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043440 202 RAYRMVIQALCRKPNLKVACGLVKEMRDMGR-VPSR----VYTNLIGACVKHGNLTEAFRLKDEMMSC 264 (850)
Q Consensus 202 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 264 (850)
..+|.+++.|...+.++.|..+..+..--.. .++. -+..++..+.-.+++.+|.+.|......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4566677777777777777777776642100 1111 2345667777777777777777776654
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.34 E-value=2.3e+02 Score=24.96 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHHHhcCC
Q 043440 269 NLVVATSLMKGYYKQGD 285 (850)
Q Consensus 269 ~~~~~~~li~~~~~~g~ 285 (850)
+..+-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 44444444444444443
No 287
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.58 E-value=2.4e+02 Score=24.91 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043440 597 RRDMESACKLFAELLEVGLSPNTVVYNSMINGFRN 631 (850)
Q Consensus 597 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 631 (850)
-.+.+.|+-.+.+|++.| .|....-..++.+...
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 345556666666666655 4444444444444433
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.22 E-value=1.2e+02 Score=25.25 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=21.7
Q ss_pred CCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 043440 230 MGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQG 284 (850)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 284 (850)
.|...+.....++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 16 ~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 16 TGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444443333444444333333444444444443333333333333333333333
No 289
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.94 E-value=4.2e+02 Score=27.18 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043440 633 GNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEG 668 (850)
Q Consensus 633 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 668 (850)
++.+.|+.++.+|++.|..|....-..+..+...-|
T Consensus 269 sd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 445555555555555554443333333333333333
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.69 E-value=1.1e+02 Score=25.84 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 043440 344 NSLLCGFLKAQLLEEAYKLFDEA 366 (850)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~~ 366 (850)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 291
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.91 E-value=1.2e+02 Score=24.84 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=20.4
Q ss_pred CCCCCChhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 043440 230 MGRVPSRVYTNLIGACVKHG-NLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYK 282 (850)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 282 (850)
.|...+.....++..+...+ ..-.|.++++.+.+.++..+..|...-+..+..
T Consensus 12 ~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 12 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 33333333333444443333 333444444444443333333333333333333
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.62 E-value=1.1e+02 Score=28.74 Aligned_cols=12 Identities=8% Similarity=0.078 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q 043440 499 WDKLKKMVEKGF 510 (850)
Q Consensus 499 ~~~~~~~~~~~~ 510 (850)
.++++.+.+.|.
T Consensus 199 ~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 199 EAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 344444444443
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.43 E-value=1.7e+02 Score=26.58 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043440 358 EAYKLFDEAVDSGI--ANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRP 407 (850)
Q Consensus 358 ~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 407 (850)
++..+|..|...++ .-...|......+...|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45555555555555 344455555666666666666666666666554444
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.97 E-value=2.7e+02 Score=25.53 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=12.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043440 626 INGFRNLGNMEAALDMHRKMIN 647 (850)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~ 647 (850)
++.+....++++|+++.++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4555566666666666655443
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.63 E-value=3.1e+02 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 043440 423 KNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFK 456 (850)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (850)
.+.+.|+-.+.+|++.| .|....-..++.+.-.
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 44555555555555555 4433333333333333
No 296
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.53 E-value=1.2e+02 Score=25.39 Aligned_cols=54 Identities=9% Similarity=-0.005 Sum_probs=22.0
Q ss_pred CCCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 043440 230 MGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQG 284 (850)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 284 (850)
.|..++.....++..+...+ .-.|.++++.+.+.++..+..|-..-+..+...|
T Consensus 13 ~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 13 RGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34444433333333333333 3344444444444443334433333334343333
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.24 E-value=1.9e+02 Score=24.64 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 043440 699 LYGKGQLENARKIFDEMNRKCLTP--NVFIFNTLIA------GYFKEGNLQEAFRLHNEMLD 752 (850)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 752 (850)
+...|++=+|-++|+..-.....+ +...|..||. ...+.|+...|..++.+.+.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445699999999999987654444 4556777777 22457999999999999865
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=28.05 E-value=4.2e+02 Score=25.60 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043440 692 YTVLINGLYGKGQLENARKIFDEMNRK 718 (850)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (850)
...-+....|.+++..|..+.+++++.
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 334444555666666666666666554
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.72 E-value=3.1e+02 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043440 597 RRDMESACKLFAELLEVGLSPNTVVYNSMINGFRN 631 (850)
Q Consensus 597 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 631 (850)
-.+.+.|+-.+.+|++.|-.|....-..++.+...
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34566666666666665555544444444444433
No 300
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.07 E-value=1.4e+02 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043440 274 TSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGK 320 (850)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (850)
..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33444444444445555555555554444444444444555554443
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.57 E-value=1.6e+02 Score=27.93 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=7.8
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 043440 451 IDGYFKQGDAERAFDVLD 468 (850)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~ 468 (850)
+...+..|+.+-+.-+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 333344455444444443
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.39 E-value=1.4e+02 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 043440 252 TEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQG 284 (850)
Q Consensus 252 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 284 (850)
-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444443333333333333333333333
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.76 E-value=6.7e+02 Score=28.89 Aligned_cols=130 Identities=8% Similarity=-0.003 Sum_probs=68.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043440 102 LLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDT 181 (850)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (850)
++..+...|.++-|.++...+ +.+...-..++.+|+..|++++|..+|++... |+..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc----------c
Confidence 555666666666555433221 12233334567777777777777777766431 2211100000 0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhcC
Q 043440 182 TEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-----VYTNLIGACVKHG 249 (850)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g 249 (850)
......++..... ......-|..++..+-+.+.++.+.++-+.+++.-...+. .|..+.++.+..|
T Consensus 880 ~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011111111110 0112235788888888999999999999888875322222 5667777776654
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.72 E-value=3.6e+02 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=19.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 043440 590 LINGFCRRRDMESACKLFAELLE 612 (850)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~~~ 612 (850)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 47888999999999999998764
No 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.18 E-value=1.1e+02 Score=28.70 Aligned_cols=9 Identities=0% Similarity=-0.156 Sum_probs=3.8
Q ss_pred HHhcCCHHH
Q 043440 454 YFKQGDAER 462 (850)
Q Consensus 454 ~~~~g~~~~ 462 (850)
.++.|+.+-
T Consensus 226 A~~~~~~~~ 234 (285)
T 1wdy_A 226 AVEKKHLGL 234 (285)
T ss_dssp HHHTTCHHH
T ss_pred HHHcCCHHH
Confidence 334444443
No 306
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.66 E-value=4.3e+02 Score=24.57 Aligned_cols=18 Identities=11% Similarity=-0.112 Sum_probs=7.7
Q ss_pred CcHHHHHHHHHHHHhcCC
Q 043440 268 MNLVVATSLMKGYYKQGD 285 (850)
Q Consensus 268 ~~~~~~~~li~~~~~~g~ 285 (850)
++..+-...+.++.+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444555555444
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.49 E-value=3.3e+02 Score=24.42 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=8.2
Q ss_pred HhcCChhHHHHHHHHHHH
Q 043440 281 YKQGDLSSALELLDKIKE 298 (850)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~ 298 (850)
++.|+.+-...+++.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 344555444444444333
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.49 E-value=2.1e+02 Score=26.96 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 043440 414 NMILAHCTVKNMDEAYSVFSE 434 (850)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~ 434 (850)
+.+...+..|+.+-+.-+++.
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHcChHHHHHHHHHc
Confidence 344444555666655555544
No 309
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.40 E-value=1.1e+02 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHH
Q 043440 97 GVFSYLLRSYVRADRINDAVDCCNGM 122 (850)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 122 (850)
..+......+.+.|+|++|++++.++
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34667788899999999999988764
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.38 E-value=2.7e+02 Score=23.70 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHhh
Q 043440 140 ALVRRNLIDEAKEFYNKMNLKGLGV--DSVTIRVMMR-A-----CLKEDTTEEAEKYFRDAKA 194 (850)
Q Consensus 140 ~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 194 (850)
.+++.|++=+|-++|+++-.....+ ....|-.||. . ..+.|+...|..++.+...
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445577777777777766554444 3344445554 1 2345666666666665543
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.69 E-value=6.3e+02 Score=25.93 Aligned_cols=135 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 043440 257 LKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGI 336 (850)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (850)
.+.-+.+.|.+--...|..-...+...|++++|.++-....+. +-.+..|.+.+-..=...|+..--+.+|..+.+.|
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g- 425 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG- 425 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043440 337 KPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKM 400 (850)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 400 (850)
..+..--.-+++.-...|+.+-..+++.+ +..+.+-=+--+.+..+..-|+.+|.+.
T Consensus 426 ~Ln~~ESlEl~r~vL~q~r~~llekWl~e-------~KL~~SEeLGDlvk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 426 QLNKYESLELCRPVLQQGRKQLLEKWLKE-------DKLECSEELGDLVKSVDPTLALSVYLRA 482 (494)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------TCSCCCHHHHHHHHHHCSHHHHHHHHHH
T ss_pred ccchHHhhHHhHHHHhccHHHHHHHHHhc-------CCccccHHhHhhhhhcCHHHHHHHHHHc
No 312
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.61 E-value=2.7e+02 Score=25.05 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=8.8
Q ss_pred HcCCChhHHHHHHHHHHHC
Q 043440 212 CRKPNLKVACGLVKEMRDM 230 (850)
Q Consensus 212 ~~~g~~~~A~~~~~~~~~~ 230 (850)
+..|+.+-...+++...+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3445555544444444433
No 313
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.40 E-value=4e+02 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 043440 423 KNMDEAYSVFSEMLEKRVTPNVVTYSVLI 451 (850)
Q Consensus 423 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 451 (850)
.+.+.|+-.+.+|++.|-.|....-..++
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi 49 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLA 49 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44555555555555544444333333333
No 314
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.94 E-value=7.1e+02 Score=26.13 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=19.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 443 NVVTYSVLIDGYFKQGDAERAFDVLDQMENAK 474 (850)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 474 (850)
+......|...|.+.+++-+|-+++..+-..+
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 34445556666667777777777666666553
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.94 E-value=5.9e+02 Score=29.33 Aligned_cols=111 Identities=9% Similarity=0.057 Sum_probs=63.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043440 625 MINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQ 704 (850)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 704 (850)
++..+...|.++-|.++. . -.+.++..--.++.+|...|++++|...|+++.. |+..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc----------c
Confidence 555666777776554432 2 2344554444577778888888888888877642 3322211000 0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043440 705 LENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDK 753 (850)
Q Consensus 705 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (850)
......++... +. ......-|.+++..+.+.|-++-++++-+.+++.
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 01111111111 10 0112346889999999999999999999998864
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.86 E-value=3.7e+02 Score=22.51 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=10.6
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 043440 590 LINGFCRRRDMESACKLFAEL 610 (850)
Q Consensus 590 li~~~~~~g~~~~A~~~~~~~ 610 (850)
++.-|...|+.++|...++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444455555555555554
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.78 E-value=1.6e+02 Score=25.12 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=13.0
Q ss_pred CCCCChhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043440 231 GRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMS 263 (850)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 263 (850)
|...+.....++..+...++.-.|.++++.+.+
T Consensus 28 g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 28 GLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp TCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 333333333333443333333344444444433
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.43 E-value=2.5e+02 Score=20.23 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 043440 289 ALELLDKI 296 (850)
Q Consensus 289 A~~~~~~~ 296 (850)
+.++++.+
T Consensus 36 ~~el~~~l 43 (83)
T 2fu4_A 36 AEDLYKRL 43 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 319
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.35 E-value=4.1e+02 Score=22.81 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------
Q 043440 239 TNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPN-------------- 304 (850)
Q Consensus 239 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------- 304 (850)
..+.-.+.-.|.+..++-++... ....+...---+|.+..++..|+..++.+.+..+..|
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~ 110 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP 110 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred hhhhhhhhhcchHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043440 305 ---KVTFAVLIEGCCTNGKVEKGYELYTQ 330 (850)
Q Consensus 305 ---~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (850)
...|+.+...+.+.|+.++|+..+..
T Consensus 111 ~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 111 GDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp TCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHhhhHhhh
No 320
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.08 E-value=4.3e+02 Score=22.88 Aligned_cols=185 Identities=12% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043440 187 KYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSR-VYTNLIGACVKHGNLTEAFRLKDEMMSCG 265 (850)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 265 (850)
..+..+.+.=-.++...-...+.++.+.|..+....+.+.+.. ++. +....+.++...|..+....+.+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d-- 87 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKALKD-- 87 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 043440 266 KPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNS 345 (850)
Q Consensus 266 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 345 (850)
++..+....+.++.+.|+.+....+...+ ..++...-...+.++.+.++ ..+...+..+.. .++..+-..
T Consensus 88 --~~~~vr~~a~~aL~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~ 157 (201)
T 3ltj_A 88 --EDGWVRQSAAVALGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGWVRQS 157 (201)
T ss_dssp --SSHHHHHHHHHHHHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTC-GGGHHHHHHHTT---CSSHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHc---CCCHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCHhHHHHHHHHHHhcCCH
Q 043440 346 LLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKV 390 (850)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 390 (850)
.+.++.+.|. .++...+..+++. ++..+....+.++.+.+..
T Consensus 158 A~~aL~~~~~-~~~~~~L~~~l~d--~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 158 AADALGEIGG-ERVRAAMEKLAET--GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHH--CCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhCc-hhHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhh
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.06 E-value=2.8e+02 Score=26.75 Aligned_cols=221 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 043440 413 NNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKA 492 (850)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 492 (850)
..++.-|...|+.++|...++++......|..+....-...=.+...-+.+-.++..+.. ++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred C----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH------------------HcCCCCCHH
Q 043440 493 G----RTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMH------------------ESGLSPNVV 550 (850)
Q Consensus 493 g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------~~~~~~~~~ 550 (850)
. +...|.+++..++..-+..+....+.+.+...+. ....+.+...... ..+..+...
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~-~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTC-CCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcc-cchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Q ss_pred H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH--HHHHHHHHHHHHcCCCCCHHHHHHH
Q 043440 551 T---YTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDM--ESACKLFAELLEVGLSPNTVVYNSM 625 (850)
Q Consensus 551 ~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~l 625 (850)
. ...++.-|...|+.++|...++++...... ...+...+..++-+.++. +....++..+.+.|+-+.......+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHHHhcCCHH
Q 043440 626 INGFRNLGNME 636 (850)
Q Consensus 626 ~~~~~~~g~~~ 636 (850)
...+....+..
T Consensus 244 ~~vl~~l~Dl~ 254 (307)
T 2zu6_B 244 ERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHhh
Done!