Citrus Sinensis ID: 043440

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850
PTDLSQTSVISSLLSCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWARKKEKMPACRKHHSMRIELLELPRMSNYRKVLVRSSSQLMDQAEVRKESLRQRQNCSPVGDITAWGSSCMNCRG
cccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccc
PTDLSQTSVISSLLSCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWARKKEKMPACRKHHSMRIELLELPRMSNYRKVLVRSSSQLMDQAEVRKESLRQRQNCSPVGDITAWGSSCMNCRG
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PTDLSQTSVISSLLSCRNEPVSAFEYFKRVERRRGFLKSLDTFCVLLHILMKDRESHRYARNLLNHYVSGGSEPTSAAIIDHLIETAKRFDFDLDSGVFSYLLRSYVRADRINDAVDCCNGMIERDIIPLLRSMNSVLKALVRRNLIDEAKEFYNKMNLKGLGVDSVTIRVMMRACLKEDTTEEAEKYFRDAKALGVKLDARAYRMVIQALCRKPNLKVACGLVKEMRDMGRVPSRVYTNLIGACVKHGNLTEAFRLKDEMMSCGKPMNLVVATSLMKGYYKQGDLSSALELLDKIKEDGLSPNKVTFAVLIEGCCTNGKVEKGYELYTQMKHMGIKPSVFIVNSLLCGFLKAQLLEEAYKLFDEAVDSGIANVFTYNDLLAWLCKRGKVSEACNLWQKMVSSGVRPSVVSYNNMILAHCTVKNMDEAYSVFSEMLEKRVTPNVVTYSVLIDGYFKQGDAERAFDVLDQMENAKISPTDYTSNIIINGLCKAGRTSVAWDKLKKMVEKGFIPKCLTYNSIIDGFVKEDDMISALTVYREMHESGLSPNVVTYTILINGFCRKNEIDLALKMRNEMMNEGLQLDATAYGSLINGFCRRRDMESACKLFAELLEVGLSPNTVVYNSMINGFRNLGNMEAALDMHRKMINDGIPCDLQTYTTLIAGLLEEGKLLTASNLYSEMLSKGIEPDIITYTVLINGLYGKGQLENARKIFDEMNRKCLTPNVFIFNTLIAGYFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKSRSDTWARKKEKMPACRKHHSMRIELLELPRMSNYRKVLxxxxxxxxxxxxxxxxxxxxxQNCSPVGDITAWGSSCMNCRG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pentatricopeptide repeat-containing protein At3g54980, mitochondrial probableQ9SV46

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 616-774
View the alignment between query and template
View the model in PyMOL
Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 581-738
View the alignment between query and template
View the model in PyMOL
Template: 2XPI, chain A
Confidence level:very confident
Coverage over the Query: 199-304,320,332-735
View the alignment between query and template
View the model in PyMOL
Template: 2XPI, chain A
Confidence level:very confident
Coverage over the Query: 268-770
View the alignment between query and template
View the model in PyMOL
Template: 3MKR, chain A
Confidence level:very confident
Coverage over the Query: 103-396
View the alignment between query and template
View the model in PyMOL
Template: 1ZBP, chain A
Confidence level:probable
Coverage over the Query: 716-779,791-837
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
1xi4, chain A confident Alignment | Template Structure