BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043441
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KSATGNSILGR+ F S ++ +T CE + + K+ ++V V+DTPG+FD +
Sbjct: 42 KSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDTPGIFDTEVPNAETSK 100
Query: 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
EI++CI L G HA+L+ + R+ +EE A FG++ + I++FT
Sbjct: 101 EIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGERARSFXILIFT 153
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP +F + E +
Sbjct: 35 KSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFSWKDHCEALYK 93
Query: 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
E+ +C L+ G H +L+ + R+ +++ A + +FG+ + IV+FT
Sbjct: 94 EVQRCYLLSAPGPHVLLL-VTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT 146
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP +F + E +
Sbjct: 15 KSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFSWKDHCEALYK 73
Query: 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
E+ +C L+ G H +L+ + R+ +++ A + +FG+ + IV+FT
Sbjct: 74 EVQRCYLLSAPGPHVLLL-VTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT 126
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP +F + E +
Sbjct: 18 KSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFSWKDHCEALYK 76
Query: 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
E+ +C L+ G H +L+ + R+ +++ A + +FG+ + IV+FT
Sbjct: 77 EVQRCYLLSAPGPHVLLL-VTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT 129
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP F + E +
Sbjct: 35 KSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDXFSWKDHCEALYK 93
Query: 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
E+ +C L+ G H +L+ + R+ +++ A + +FG+ + IV+FT
Sbjct: 94 EVQRCYLLSAPGPHVLLL-VTQLGRYTSQDQQAAQRVKEIFGEDAXGHTIVLFT 146
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KSATGNSILG+R F SR ++ VT C + D V V+DTP +F G
Sbjct: 34 KSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDIFSSQVSKTDPGC 92
Query: 92 EIV-KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
E C L+ G HA+L+ + RF +++ A+ + +FG+ V +M++VFT
Sbjct: 93 EERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFT 146
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KS+T NSI+G R S + R+ + G +N+IDTPGL + ++ + +
Sbjct: 52 KSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLIEGGYIND-MAL 108
Query: 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
I+K L K + V R ++ + FGK +++ IV T
Sbjct: 109 NIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT 162
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91
KS+T NSI+G R S + R+ + G +N+IDTPGL + ++ +
Sbjct: 52 KSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLIEGGYIND-XAL 108
Query: 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145
I+K L K + V R ++ + FGK +++ IV T
Sbjct: 109 NIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT 162
>pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 11/50 (22%)
Query: 38 SILGRRAFK-----SRASSSGVTSTC-EMQRTVLKDGQVVNVIDTPGLFD 81
++LG R + + A+++ VT EM +G+++N++DTPGL D
Sbjct: 25 NVLGERLYNHIVAINPAAAAKVTGMLLEM-----DNGEILNLLDTPGLLD 69
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With
The Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of
4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of
4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (30s Subunit)
Length = 691
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With
Ef-G, Gdp And Fusidic Acid
Length = 691
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDTPGLFDFSAGS 86
KS+ N++ GR A + VT R VL+ DG +++IDT GL + S
Sbjct: 20 KSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 72
Query: 87 EFVGME 92
E +G+E
Sbjct: 73 ERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDTPGLFDFSAGS 86
KS+ N++ GR A + VT R VL+ DG +++IDT GL + S
Sbjct: 17 KSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 69
Query: 87 EFVGME 92
E +G+E
Sbjct: 70 ERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDTPGLFDFSAGS 86
KS+ N++ GR A + VT R VL+ DG +++IDT GL + S
Sbjct: 17 KSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREASDEV 69
Query: 87 EFVGME 92
E +G+E
Sbjct: 70 ERIGIE 75
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
KS+T NS++G + + + + RT+ G +N+IDTPGL +
Sbjct: 49 KSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
KS+T NS++G + + + + RT+ G +N+IDTPGL +
Sbjct: 48 KSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 95
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
KS+T NS++G + + + + RT+ G +N+IDTPGL +
Sbjct: 49 KSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 67 DGQVVNVIDTPGLFDFSAGSE 87
+G VN+IDTPG DF+ E
Sbjct: 73 EGHRVNIIDTPGHVDFTVEVE 93
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 67 DGQVVNVIDTPGLFDFSAGSE 87
+G VN+IDTPG DF+ E
Sbjct: 73 EGHRVNIIDTPGHVDFTVEVE 93
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 32 KSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
KS+T NS++G + + + + RT+ G +N+IDTPGL +
Sbjct: 49 KSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
>pdb|3OFL|A Chain A, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|B Chain B, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|C Chain C, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|D Chain D, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|E Chain E, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|F Chain F, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|G Chain G, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|H Chain H, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|I Chain I, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|J Chain J, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|K Chain K, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|L Chain L, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|M Chain M, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|N Chain N, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
pdb|3OFL|O Chain O, Crystal Structure Of Humanpapillomavirus18 (Hpv18) Capsid
L1 Pentamers Bound To Heparin Oligosaccharides
Length = 427
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 44 AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF---VGMEIVKCIGLA 100
A KSR S G E++ TVL+DG +V+ G DFS + V ++I + I
Sbjct: 155 ASKSRPLSQGDCPPLELKNTVLEDGDMVDT--GYGAMDFSTLQDTKCEVPLDICQSICKY 212
Query: 101 KDGIH--AVLVGFSVRSRFPQEEEAALHSWQ 129
D + A G S+ +E+ A H W
Sbjct: 213 PDYLQMSADPYGDSMFFCLRREQLFARHFWN 243
>pdb|2R5I|A Chain A, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|B Chain B, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|C Chain C, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|D Chain D, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|E Chain E, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|F Chain F, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|G Chain G, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|H Chain H, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|I Chain I, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|J Chain J, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|K Chain K, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|L Chain L, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|M Chain M, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|N Chain N, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
pdb|2R5I|O Chain O, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 18
Length = 428
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 44 AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF---VGMEIVKCIGLA 100
A KSR S G E++ TVL+DG +V+ G DFS + V ++I + I
Sbjct: 155 ASKSRPLSQGDCPPLELKNTVLEDGDMVDT--GYGAMDFSTLQDTKCEVPLDICQSICKY 212
Query: 101 KDGIH--AVLVGFSVRSRFPQEEEAALHSWQ 129
D + A G S+ +E+ A H W
Sbjct: 213 PDYLQMSADPYGDSMFFCLRREQLFARHFWN 243
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 53 GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
G++ T + + +D +VVN++DTPG DFS
Sbjct: 85 GISVTTSVMQFPYRD-RVVNLLDTPGHQDFS 114
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 36 GNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95
G S L R K + +G + +K G+ + ++DTPG+ E VG+ +
Sbjct: 132 GKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLA- 190
Query: 96 CIGLAKDGI 104
G KD I
Sbjct: 191 VTGAIKDSI 199
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+ID PG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDAPGHVDFT 91
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+ID PG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDAPGHVDFT 91
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G
Trapped With A Gtp Analogue
Length = 691
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+ID PG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDAPGHVDFT 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,309,819
Number of Sequences: 62578
Number of extensions: 138167
Number of successful extensions: 276
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 30
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)