Query 043441
Match_columns 173
No_of_seqs 112 out of 1130
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 2.7E-29 5.9E-34 179.4 11.4 149 20-172 1-149 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 2.9E-27 6.3E-32 167.2 15.6 147 20-171 1-147 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 3.9E-24 8.5E-29 157.8 14.3 152 14-172 33-187 (313)
4 TIGR00993 3a0901s04IAP86 chlor 99.9 4.7E-22 1E-26 157.9 15.5 152 17-172 116-275 (763)
5 COG1159 Era GTPase [General fu 99.9 2.8E-21 6.1E-26 140.3 14.3 127 17-153 4-130 (298)
6 cd01853 Toc34_like Toc34-like 99.9 6.3E-21 1.4E-25 138.8 15.3 137 15-154 27-166 (249)
7 PF01926 MMR_HSR1: 50S ribosom 99.8 3.3E-19 7.2E-24 115.8 13.2 116 21-146 1-116 (116)
8 COG1160 Predicted GTPases [Gen 99.8 2.8E-19 6.1E-24 136.5 14.0 124 20-152 4-127 (444)
9 PF02421 FeoB_N: Ferrous iron 99.8 3E-19 6.5E-24 120.6 9.0 122 21-155 2-123 (156)
10 PRK00089 era GTPase Era; Revie 99.8 5.4E-18 1.2E-22 126.8 15.3 124 18-151 4-127 (292)
11 TIGR00436 era GTP-binding prot 99.8 5.4E-18 1.2E-22 125.4 14.2 121 21-152 2-122 (270)
12 COG1084 Predicted GTPase [Gene 99.8 9.7E-18 2.1E-22 123.2 14.1 132 11-152 160-295 (346)
13 COG0218 Predicted GTPase [Gene 99.8 4.3E-17 9.4E-22 112.7 15.4 127 16-152 21-150 (200)
14 cd01894 EngA1 EngA1 subfamily. 99.8 1.8E-17 3.9E-22 112.6 12.2 121 23-153 1-121 (157)
15 PRK15494 era GTPase Era; Provi 99.8 4.3E-17 9.3E-22 124.0 15.2 123 19-152 52-175 (339)
16 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.8E-17 4E-22 113.3 11.4 128 18-159 8-136 (205)
17 TIGR03598 GTPase_YsxC ribosome 99.8 1.4E-16 3E-21 111.1 16.1 128 15-152 14-144 (179)
18 cd04164 trmE TrmE (MnmE, ThdF, 99.8 8E-17 1.7E-21 109.3 14.6 121 20-152 2-122 (157)
19 cd04163 Era Era subfamily. Er 99.8 6.2E-17 1.3E-21 110.6 14.1 123 19-151 3-125 (168)
20 cd01897 NOG NOG1 is a nucleola 99.8 5.7E-17 1.2E-21 111.6 13.9 125 20-153 1-129 (168)
21 PRK12298 obgE GTPase CgtA; Rev 99.8 9.3E-17 2E-21 123.8 16.1 126 21-152 161-290 (390)
22 cd01895 EngA2 EngA2 subfamily. 99.8 9E-17 2E-21 110.7 14.5 127 19-152 2-128 (174)
23 cd01898 Obg Obg subfamily. Th 99.7 5.9E-17 1.3E-21 111.7 12.9 125 21-152 2-129 (170)
24 PRK12299 obgE GTPase CgtA; Rev 99.7 2E-16 4.3E-21 119.8 16.8 126 21-152 160-286 (335)
25 TIGR03594 GTPase_EngA ribosome 99.7 1.3E-16 2.7E-21 125.3 15.1 122 21-152 1-122 (429)
26 TIGR03156 GTP_HflX GTP-binding 99.7 1.7E-16 3.6E-21 121.1 15.2 129 17-152 187-316 (351)
27 cd01864 Rab19 Rab19 subfamily. 99.7 1.7E-16 3.8E-21 109.0 13.9 119 19-153 3-124 (165)
28 cd01867 Rab8_Rab10_Rab13_like 99.7 1.7E-16 3.7E-21 109.3 13.7 119 19-153 3-124 (167)
29 PRK03003 GTP-binding protein D 99.7 2.8E-16 6.1E-21 124.5 16.7 126 17-152 36-161 (472)
30 cd04119 RJL RJL (RabJ-Like) su 99.7 1.9E-16 4.1E-21 108.7 13.5 120 20-151 1-124 (168)
31 cd01878 HflX HflX subfamily. 99.7 3.1E-16 6.6E-21 111.5 14.9 129 17-152 39-168 (204)
32 PRK00093 GTP-binding protein D 99.7 2.3E-16 5E-21 124.0 15.4 122 20-151 2-123 (435)
33 cd01865 Rab3 Rab3 subfamily. 99.7 2.5E-16 5.5E-21 108.3 13.8 119 20-153 2-122 (165)
34 cd04122 Rab14 Rab14 subfamily. 99.7 2.3E-16 5.1E-21 108.5 13.6 116 20-153 3-123 (166)
35 cd01866 Rab2 Rab2 subfamily. 99.7 2.9E-16 6.3E-21 108.3 13.7 120 19-152 4-124 (168)
36 cd01861 Rab6 Rab6 subfamily. 99.7 3.3E-16 7.1E-21 107.0 13.5 117 20-152 1-120 (161)
37 cd04113 Rab4 Rab4 subfamily. 99.7 2.9E-16 6.2E-21 107.4 13.1 118 20-152 1-120 (161)
38 cd04140 ARHI_like ARHI subfami 99.7 3.1E-16 6.6E-21 107.8 13.2 120 20-152 2-123 (165)
39 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.6E-16 7.8E-21 107.5 13.6 115 20-152 1-117 (168)
40 cd01868 Rab11_like Rab11-like. 99.7 4.5E-16 9.8E-21 106.8 13.8 119 19-153 3-124 (165)
41 TIGR03594 GTPase_EngA ribosome 99.7 5.9E-16 1.3E-20 121.5 16.2 127 17-150 170-296 (429)
42 TIGR02729 Obg_CgtA Obg family 99.7 7.1E-16 1.5E-20 116.7 15.9 127 20-152 158-288 (329)
43 cd04171 SelB SelB subfamily. 99.7 7.6E-16 1.7E-20 105.3 14.5 116 21-152 2-119 (164)
44 cd04124 RabL2 RabL2 subfamily. 99.7 2.6E-16 5.7E-21 107.8 11.9 115 20-150 1-117 (161)
45 cd01850 CDC_Septin CDC/Septin. 99.7 7.5E-16 1.6E-20 114.0 15.1 127 19-152 4-158 (276)
46 PRK12297 obgE GTPase CgtA; Rev 99.7 9.8E-16 2.1E-20 118.9 16.3 124 21-150 160-287 (424)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 4.6E-16 1E-20 106.9 13.1 118 20-153 3-123 (166)
48 PRK00093 GTP-binding protein D 99.7 5.5E-16 1.2E-20 121.9 14.9 129 17-152 171-299 (435)
49 COG1160 Predicted GTPases [Gen 99.7 7.3E-17 1.6E-21 123.4 9.5 137 18-163 177-315 (444)
50 cd00154 Rab Rab family. Rab G 99.7 7.2E-16 1.6E-20 104.5 13.3 117 20-150 1-118 (159)
51 cd04109 Rab28 Rab28 subfamily. 99.7 7.3E-16 1.6E-20 110.5 13.9 118 21-153 2-125 (215)
52 cd01860 Rab5_related Rab5-rela 99.7 9.1E-16 2E-20 105.0 13.7 119 20-152 2-121 (163)
53 PRK12296 obgE GTPase CgtA; Rev 99.7 1.4E-15 3.1E-20 119.6 16.2 125 21-152 161-299 (500)
54 cd04154 Arl2 Arl2 subfamily. 99.7 6.8E-16 1.5E-20 106.9 13.0 120 14-152 9-130 (173)
55 PRK11058 GTPase HflX; Provisio 99.7 9.7E-16 2.1E-20 119.4 15.2 128 18-152 196-324 (426)
56 cd04106 Rab23_lke Rab23-like s 99.7 9.6E-16 2.1E-20 104.8 13.6 117 21-153 2-122 (162)
57 cd04120 Rab12 Rab12 subfamily. 99.7 7.1E-16 1.5E-20 109.3 13.2 117 21-153 2-121 (202)
58 cd04104 p47_IIGP_like p47 (47- 99.7 5.1E-16 1.1E-20 109.8 12.4 118 20-152 2-122 (197)
59 cd04123 Rab21 Rab21 subfamily. 99.7 1E-15 2.2E-20 104.4 13.6 118 20-152 1-120 (162)
60 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1E-15 2.2E-20 119.9 15.2 126 16-152 200-325 (442)
61 cd04110 Rab35 Rab35 subfamily. 99.7 1.1E-15 2.3E-20 108.4 13.9 120 18-153 5-126 (199)
62 cd04112 Rab26 Rab26 subfamily. 99.7 8.7E-16 1.9E-20 108.1 13.3 118 20-152 1-121 (191)
63 smart00175 RAB Rab subfamily o 99.7 1E-15 2.2E-20 104.7 13.4 117 20-152 1-120 (164)
64 cd04160 Arfrp1 Arfrp1 subfamil 99.7 5.5E-16 1.2E-20 106.6 12.0 118 21-152 1-122 (167)
65 cd04149 Arf6 Arf6 subfamily. 99.7 1.3E-15 2.9E-20 105.1 13.8 116 17-151 7-124 (168)
66 PRK00454 engB GTP-binding prot 99.7 3.7E-15 8.1E-20 105.1 16.3 127 16-152 21-150 (196)
67 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.2E-15 2.7E-20 108.2 13.8 117 20-151 1-124 (201)
68 cd04161 Arl2l1_Arl13_like Arl2 99.7 2.5E-15 5.5E-20 103.6 15.0 113 21-152 1-115 (167)
69 cd01881 Obg_like The Obg-like 99.7 2E-16 4.3E-21 109.5 9.4 123 24-153 1-136 (176)
70 PLN03110 Rab GTPase; Provision 99.7 1.8E-15 4E-20 108.5 14.7 122 16-152 9-132 (216)
71 COG3596 Predicted GTPase [Gene 99.7 1.5E-16 3.4E-21 114.4 8.8 128 16-152 36-163 (296)
72 cd04125 RabA_like RabA-like su 99.7 1.4E-15 3E-20 106.8 13.5 117 20-152 1-120 (188)
73 cd04142 RRP22 RRP22 subfamily. 99.7 1.4E-15 3.1E-20 107.6 13.5 127 20-152 1-131 (198)
74 COG0486 ThdF Predicted GTPase 99.7 9.1E-16 2E-20 117.7 13.4 130 13-153 211-340 (454)
75 smart00177 ARF ARF-like small 99.7 2.3E-15 5E-20 104.6 14.2 116 18-152 12-129 (175)
76 cd01862 Rab7 Rab7 subfamily. 99.7 2.2E-15 4.7E-20 104.0 14.0 119 20-152 1-124 (172)
77 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2E-15 4.3E-20 104.3 13.7 120 19-153 2-125 (170)
78 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.4E-15 5.3E-20 102.9 14.0 113 21-152 2-116 (159)
79 PLN03118 Rab family protein; P 99.7 2.5E-15 5.4E-20 107.4 14.6 126 13-153 8-136 (211)
80 cd04127 Rab27A Rab27a subfamil 99.7 2.6E-15 5.6E-20 104.5 14.2 124 18-153 3-136 (180)
81 cd04136 Rap_like Rap-like subf 99.7 1.5E-15 3.2E-20 103.9 12.6 117 20-152 2-121 (163)
82 cd04157 Arl6 Arl6 subfamily. 99.7 1.3E-15 2.9E-20 104.1 12.1 117 21-152 1-119 (162)
83 cd04131 Rnd Rnd subfamily. Th 99.7 1.1E-15 2.5E-20 106.4 12.0 115 20-151 2-119 (178)
84 cd00881 GTP_translation_factor 99.7 1.6E-15 3.4E-20 106.1 12.8 115 21-152 1-129 (189)
85 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.4E-15 2.9E-20 106.3 12.2 118 17-151 3-123 (182)
86 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.1E-15 4.6E-20 103.2 13.0 118 19-152 2-122 (164)
87 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 3.8E-15 8.2E-20 103.4 14.3 116 18-152 14-131 (174)
88 PRK09518 bifunctional cytidyla 99.7 3.9E-15 8.4E-20 123.1 16.8 126 17-152 273-398 (712)
89 cd04117 Rab15 Rab15 subfamily. 99.7 2.6E-15 5.7E-20 102.8 13.3 117 21-153 2-121 (161)
90 cd04121 Rab40 Rab40 subfamily. 99.7 2.7E-15 5.8E-20 105.4 13.4 118 18-152 5-125 (189)
91 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.7E-15 8.1E-20 102.1 13.8 118 21-152 2-122 (164)
92 cd01891 TypA_BipA TypA (tyrosi 99.7 2.1E-15 4.6E-20 106.4 12.8 117 19-152 2-132 (194)
93 smart00178 SAR Sar1p-like memb 99.7 3.2E-15 6.9E-20 104.7 13.6 117 17-152 15-133 (184)
94 cd04158 ARD1 ARD1 subfamily. 99.7 2E-15 4.4E-20 104.2 12.4 113 21-152 1-115 (169)
95 PRK03003 GTP-binding protein D 99.7 3.2E-15 7E-20 118.5 15.2 127 17-152 209-337 (472)
96 PLN03071 GTP-binding nuclear p 99.7 1.9E-15 4.2E-20 108.5 12.6 117 17-151 11-131 (219)
97 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 5.2E-15 1.1E-19 101.8 14.2 114 22-153 2-115 (164)
98 KOG0078 GTP-binding protein SE 99.7 2E-15 4.4E-20 104.6 11.8 129 15-157 8-137 (207)
99 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 4.5E-15 9.7E-20 102.8 13.7 117 20-152 3-122 (172)
100 PRK05291 trmE tRNA modificatio 99.7 2.9E-15 6.2E-20 117.9 14.2 124 17-152 213-336 (449)
101 PTZ00369 Ras-like protein; Pro 99.7 3.1E-15 6.6E-20 105.2 12.9 122 17-152 3-125 (189)
102 cd01863 Rab18 Rab18 subfamily. 99.7 3.2E-15 7E-20 102.1 12.7 119 20-151 1-120 (161)
103 COG2262 HflX GTPases [General 99.7 3.2E-15 7E-20 113.0 13.7 135 13-153 186-320 (411)
104 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 3.2E-15 7E-20 102.2 12.3 131 17-161 20-152 (221)
105 PTZ00133 ADP-ribosylation fact 99.7 1E-14 2.2E-19 102.0 15.3 117 17-152 15-133 (182)
106 cd04144 Ras2 Ras2 subfamily. 99.7 2.2E-15 4.7E-20 106.0 12.0 117 21-152 1-121 (190)
107 cd04155 Arl3 Arl3 subfamily. 99.7 7E-15 1.5E-19 101.6 14.4 117 17-152 12-130 (173)
108 smart00173 RAS Ras subfamily o 99.7 3.2E-15 6.9E-20 102.5 12.4 116 21-152 2-120 (164)
109 cd01893 Miro1 Miro1 subfamily. 99.7 3E-15 6.5E-20 103.0 12.3 116 21-153 2-119 (166)
110 cd00157 Rho Rho (Ras homology) 99.7 2.4E-15 5.1E-20 103.7 11.8 118 20-153 1-120 (171)
111 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 3.7E-15 8E-20 103.1 12.7 116 21-152 2-121 (170)
112 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.6E-15 7.9E-20 101.7 12.5 116 20-151 2-120 (162)
113 cd04151 Arl1 Arl1 subfamily. 99.7 2.9E-15 6.3E-20 102.2 11.9 113 21-152 1-115 (158)
114 cd04156 ARLTS1 ARLTS1 subfamil 99.7 4.3E-15 9.3E-20 101.4 12.7 114 21-152 1-116 (160)
115 cd00877 Ran Ran (Ras-related n 99.7 2.6E-15 5.6E-20 103.4 11.6 114 21-152 2-119 (166)
116 PLN00223 ADP-ribosylation fact 99.7 1.5E-14 3.2E-19 101.1 15.4 117 17-152 15-133 (181)
117 cd00878 Arf_Arl Arf (ADP-ribos 99.7 4.1E-15 8.8E-20 101.4 12.3 114 21-152 1-115 (158)
118 cd01879 FeoB Ferrous iron tran 99.7 3.6E-15 7.9E-20 101.4 11.9 116 24-152 1-116 (158)
119 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 4E-15 8.7E-20 107.4 12.6 117 18-151 12-131 (232)
120 cd04116 Rab9 Rab9 subfamily. 99.6 6.5E-15 1.4E-19 101.6 13.2 122 17-151 3-128 (170)
121 cd04146 RERG_RasL11_like RERG/ 99.6 1.6E-15 3.5E-20 104.2 10.0 118 21-152 1-121 (165)
122 cd04175 Rap1 Rap1 subgroup. T 99.6 4.8E-15 1E-19 101.7 12.2 117 20-152 2-121 (164)
123 cd00879 Sar1 Sar1 subfamily. 99.6 1.8E-14 3.8E-19 101.2 15.3 118 16-152 16-135 (190)
124 PF00009 GTP_EFTU: Elongation 99.6 1.1E-15 2.5E-20 107.3 9.2 118 18-152 2-137 (188)
125 PLN03108 Rab family protein; P 99.6 1E-14 2.2E-19 104.2 14.1 119 18-152 5-126 (210)
126 cd04114 Rab30 Rab30 subfamily. 99.6 8.8E-15 1.9E-19 100.7 13.4 120 18-153 6-128 (169)
127 cd04102 RabL3 RabL3 (Rab-like3 99.6 8.5E-15 1.8E-19 103.7 13.5 121 21-152 2-144 (202)
128 cd01884 EF_Tu EF-Tu subfamily. 99.6 2E-15 4.4E-20 106.4 10.3 117 19-151 2-132 (195)
129 cd00880 Era_like Era (E. coli 99.6 1.3E-14 2.8E-19 98.1 13.9 120 24-153 1-120 (163)
130 cd04132 Rho4_like Rho4-like su 99.6 6.2E-15 1.3E-19 103.3 12.7 115 20-152 1-120 (187)
131 cd04111 Rab39 Rab39 subfamily. 99.6 9.4E-15 2E-19 104.4 13.7 120 19-152 2-124 (211)
132 cd04105 SR_beta Signal recogni 99.6 2.2E-15 4.7E-20 107.1 10.3 116 20-152 1-124 (203)
133 KOG0092 GTPase Rab5/YPT51 and 99.6 2E-15 4.3E-20 103.0 9.3 129 17-159 3-132 (200)
134 cd01875 RhoG RhoG subfamily. 99.6 5.7E-15 1.2E-19 104.0 12.1 118 19-152 3-122 (191)
135 smart00053 DYNc Dynamin, GTPas 99.6 3.5E-14 7.5E-19 102.6 16.2 140 18-163 25-217 (240)
136 cd04134 Rho3 Rho3 subfamily. 99.6 3.9E-15 8.5E-20 104.6 11.1 116 20-152 1-119 (189)
137 cd04118 Rab24 Rab24 subfamily. 99.6 5.7E-15 1.2E-19 104.0 11.8 114 20-151 1-119 (193)
138 PRK04213 GTP-binding protein; 99.6 1.5E-14 3.2E-19 102.6 14.0 124 17-152 7-145 (201)
139 smart00174 RHO Rho (Ras homolo 99.6 4.3E-15 9.2E-20 102.8 10.8 113 22-152 1-117 (174)
140 PRK09518 bifunctional cytidyla 99.6 1.5E-14 3.2E-19 119.7 15.6 126 18-152 449-576 (712)
141 cd00876 Ras Ras family. The R 99.6 1.3E-14 2.8E-19 98.7 12.9 116 21-152 1-119 (160)
142 cd04176 Rap2 Rap2 subgroup. T 99.6 7.7E-15 1.7E-19 100.5 11.8 117 20-152 2-121 (163)
143 cd04159 Arl10_like Arl10-like 99.6 2.5E-14 5.5E-19 96.9 14.3 113 22-152 2-116 (159)
144 cd04126 Rab20 Rab20 subfamily. 99.6 1.4E-14 3E-19 104.0 13.5 113 20-151 1-114 (220)
145 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.4E-14 3E-19 101.4 12.7 121 19-152 3-124 (183)
146 KOG0095 GTPase Rab30, small G 99.6 1.1E-14 2.4E-19 95.6 11.2 120 20-153 8-128 (213)
147 cd01874 Cdc42 Cdc42 subfamily. 99.6 8.7E-15 1.9E-19 101.7 11.3 114 20-152 2-120 (175)
148 PF08477 Miro: Miro-like prote 99.6 1.2E-15 2.6E-20 99.3 6.4 116 21-148 1-119 (119)
149 cd04139 RalA_RalB RalA/RalB su 99.6 2.3E-14 4.9E-19 98.0 13.1 118 20-151 1-119 (164)
150 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.9E-14 4E-19 103.4 13.1 116 20-151 2-119 (222)
151 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.3E-14 2.8E-19 101.5 12.0 113 20-151 1-118 (182)
152 cd01896 DRG The developmentall 99.6 3.8E-14 8.2E-19 102.7 14.8 87 21-114 2-88 (233)
153 cd01876 YihA_EngB The YihA (En 99.6 3.8E-14 8.2E-19 97.0 14.2 121 22-152 2-125 (170)
154 cd04133 Rop_like Rop subfamily 99.6 1.6E-14 3.6E-19 100.3 12.3 117 20-152 2-120 (176)
155 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.7E-14 3.8E-19 102.8 12.7 116 21-152 1-145 (208)
156 cd04177 RSR1 RSR1 subgroup. R 99.6 1.7E-14 3.7E-19 99.4 12.3 119 20-153 2-122 (168)
157 cd01892 Miro2 Miro2 subfamily. 99.6 3E-14 6.5E-19 98.4 13.3 119 18-152 3-123 (169)
158 cd01871 Rac1_like Rac1-like su 99.6 1.7E-14 3.7E-19 100.1 12.2 114 20-151 2-119 (174)
159 cd01886 EF-G Elongation factor 99.6 1.8E-14 3.8E-19 106.4 12.8 115 21-152 1-131 (270)
160 KOG1423 Ras-like GTPase ERA [C 99.6 1.2E-14 2.6E-19 106.0 11.5 131 16-152 69-200 (379)
161 PF00025 Arf: ADP-ribosylation 99.6 1.9E-14 4.2E-19 100.0 12.1 117 17-152 12-130 (175)
162 PRK09554 feoB ferrous iron tra 99.6 3E-14 6.6E-19 118.0 14.9 123 19-152 3-127 (772)
163 cd04143 Rhes_like Rhes_like su 99.6 3.1E-14 6.8E-19 103.9 13.1 118 20-152 1-128 (247)
164 cd04135 Tc10 TC10 subfamily. 99.6 2.9E-14 6.3E-19 98.6 12.4 114 21-152 2-119 (174)
165 cd01890 LepA LepA subfamily. 99.6 1.8E-14 3.8E-19 100.2 11.3 117 20-152 1-134 (179)
166 KOG0087 GTPase Rab11/YPT3, sma 99.6 1.4E-14 3E-19 100.3 10.2 123 17-153 12-135 (222)
167 PF00735 Septin: Septin; Inte 99.6 2.2E-14 4.8E-19 106.3 11.9 127 20-152 5-157 (281)
168 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2.6E-14 5.6E-19 99.0 11.5 114 20-151 1-118 (173)
169 PLN00023 GTP-binding protein; 99.6 4.9E-14 1.1E-18 105.2 13.6 129 13-152 15-166 (334)
170 cd04168 TetM_like Tet(M)-like 99.6 3.9E-14 8.5E-19 102.8 12.5 115 21-152 1-131 (237)
171 PF00350 Dynamin_N: Dynamin fa 99.6 1.5E-14 3.3E-19 99.6 9.9 115 22-147 1-168 (168)
172 COG0370 FeoB Fe2+ transport sy 99.6 2.8E-14 6.2E-19 113.9 12.4 121 19-154 3-125 (653)
173 cd04147 Ras_dva Ras-dva subfam 99.6 3.3E-14 7.2E-19 100.6 11.6 115 21-151 1-118 (198)
174 cd01870 RhoA_like RhoA-like su 99.6 4.4E-14 9.6E-19 97.8 12.0 116 20-152 2-120 (175)
175 cd04148 RGK RGK subfamily. Th 99.6 5.9E-14 1.3E-18 101.0 12.9 119 20-153 1-122 (221)
176 cd04169 RF3 RF3 subfamily. Pe 99.6 8.6E-14 1.9E-18 102.7 14.0 118 19-153 2-139 (267)
177 KOG0080 GTPase Rab18, small G 99.6 3.9E-14 8.4E-19 94.1 10.4 130 16-159 8-139 (209)
178 TIGR02528 EutP ethanolamine ut 99.6 2E-14 4.3E-19 96.4 9.1 101 21-151 2-102 (142)
179 TIGR00487 IF-2 translation ini 99.6 1.3E-13 2.8E-18 111.3 14.9 119 16-152 84-202 (587)
180 cd04137 RheB Rheb (Ras Homolog 99.6 9.3E-14 2E-18 96.7 12.4 117 20-152 2-121 (180)
181 PF00071 Ras: Ras family; Int 99.6 2.5E-14 5.4E-19 97.8 9.4 122 21-158 1-125 (162)
182 cd04170 EF-G_bact Elongation f 99.6 9.1E-14 2E-18 102.8 12.7 115 21-152 1-131 (268)
183 cd01889 SelB_euk SelB subfamil 99.6 7.1E-14 1.5E-18 98.5 11.6 116 21-152 2-135 (192)
184 KOG1489 Predicted GTP-binding 99.6 6E-14 1.3E-18 102.8 11.2 126 20-152 197-327 (366)
185 smart00176 RAN Ran (Ras-relate 99.6 5.1E-14 1.1E-18 99.7 10.6 109 25-151 1-113 (200)
186 KOG0098 GTPase Rab2, small G p 99.6 1.5E-13 3.2E-18 93.5 12.2 123 17-153 4-127 (216)
187 CHL00071 tufA elongation facto 99.6 4.8E-14 1E-18 109.9 11.3 121 15-152 8-143 (409)
188 PRK15467 ethanolamine utilizat 99.6 3.6E-14 7.8E-19 97.0 9.4 116 20-163 2-117 (158)
189 TIGR00231 small_GTP small GTP- 99.6 2.4E-13 5.2E-18 91.7 13.4 117 20-152 2-123 (161)
190 COG0536 Obg Predicted GTPase [ 99.6 1.6E-13 3.6E-18 101.6 13.1 124 22-152 162-290 (369)
191 cd01888 eIF2_gamma eIF2-gamma 99.5 2E-13 4.4E-18 97.0 12.5 117 21-152 2-152 (203)
192 PRK05306 infB translation init 99.5 2E-13 4.3E-18 112.9 14.1 118 16-152 287-404 (787)
193 KOG0073 GTP-binding ADP-ribosy 99.5 1.7E-13 3.8E-18 91.2 11.1 118 16-152 13-132 (185)
194 KOG1490 GTP-binding protein CR 99.5 2.9E-14 6.3E-19 109.9 8.4 136 11-154 160-298 (620)
195 PRK12317 elongation factor 1-a 99.5 1.3E-13 2.8E-18 108.2 12.1 121 16-152 3-154 (425)
196 PTZ00132 GTP-binding nuclear p 99.5 2.5E-13 5.5E-18 97.3 12.7 119 15-151 5-127 (215)
197 cd00882 Ras_like_GTPase Ras-li 99.5 1.6E-13 3.5E-18 91.7 10.6 118 24-153 1-118 (157)
198 PF09439 SRPRB: Signal recogni 99.5 3.7E-15 7.9E-20 102.9 2.4 122 19-153 3-128 (181)
199 CHL00189 infB translation init 99.5 3.6E-13 7.9E-18 110.5 14.2 119 16-152 241-362 (742)
200 KOG0086 GTPase Rab4, small G p 99.5 2.4E-13 5.2E-18 89.7 10.5 137 19-169 9-146 (214)
201 COG1100 GTPase SAR1 and relate 99.5 5.9E-13 1.3E-17 95.4 13.5 120 20-153 6-127 (219)
202 KOG0079 GTP-binding protein H- 99.5 2.1E-13 4.6E-18 89.5 9.9 118 20-152 9-127 (198)
203 COG5019 CDC3 Septin family pro 99.5 2.6E-13 5.6E-18 101.5 11.5 130 17-152 21-177 (373)
204 cd04129 Rho2 Rho2 subfamily. 99.5 3.3E-13 7.2E-18 94.7 11.5 113 20-151 2-119 (187)
205 PF05049 IIGP: Interferon-indu 99.5 6.2E-14 1.3E-18 106.6 8.2 120 17-149 33-153 (376)
206 PRK12735 elongation factor Tu; 99.5 3.9E-13 8.6E-18 104.4 12.3 120 15-151 8-142 (396)
207 PRK09866 hypothetical protein; 99.5 8.9E-13 1.9E-17 105.4 14.0 74 69-151 230-303 (741)
208 KOG1547 Septin CDC10 and relat 99.5 1.8E-13 3.8E-18 96.9 9.0 127 19-152 46-199 (336)
209 cd04103 Centaurin_gamma Centau 99.5 3.9E-13 8.5E-18 91.9 10.4 108 21-150 2-112 (158)
210 cd01885 EF2 EF2 (for archaea a 99.5 4.7E-13 1E-17 96.1 11.2 115 20-150 1-138 (222)
211 TIGR00484 EF-G translation elo 99.5 9E-13 1.9E-17 108.9 13.9 120 16-152 7-142 (689)
212 KOG0093 GTPase Rab3, small G p 99.5 5.5E-13 1.2E-17 87.4 9.9 127 19-159 21-148 (193)
213 PRK12739 elongation factor G; 99.5 8.1E-13 1.8E-17 109.2 13.2 120 16-152 5-140 (691)
214 TIGR00491 aIF-2 translation in 99.5 8.5E-13 1.9E-17 106.5 13.0 116 18-151 3-135 (590)
215 PRK12736 elongation factor Tu; 99.5 8.6E-13 1.9E-17 102.5 12.2 121 16-152 9-143 (394)
216 cd04167 Snu114p Snu114p subfam 99.5 5.7E-13 1.2E-17 95.4 10.5 115 20-150 1-136 (213)
217 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 8.7E-13 1.9E-17 94.9 11.1 125 21-152 1-126 (232)
218 PRK10218 GTP-binding protein; 99.5 2.2E-12 4.8E-17 104.4 14.7 119 17-152 3-135 (607)
219 PRK00007 elongation factor G; 99.5 1.3E-12 2.8E-17 107.9 13.6 120 16-152 7-142 (693)
220 TIGR00475 selB selenocysteine- 99.5 2.5E-12 5.5E-17 104.1 14.9 115 21-152 2-118 (581)
221 KOG2655 Septin family protein 99.5 1.4E-12 3E-17 98.2 12.4 130 17-152 19-173 (366)
222 KOG1191 Mitochondrial GTPase [ 99.5 8E-13 1.7E-17 101.9 11.2 130 17-152 266-404 (531)
223 PRK00049 elongation factor Tu; 99.5 1.3E-12 2.8E-17 101.5 12.3 119 16-151 9-142 (396)
224 TIGR01394 TypA_BipA GTP-bindin 99.5 2.1E-12 4.5E-17 104.6 13.8 116 20-152 2-131 (594)
225 cd01883 EF1_alpha Eukaryotic e 99.5 1.5E-12 3.3E-17 93.5 11.6 115 21-151 1-151 (219)
226 TIGR00485 EF-Tu translation el 99.4 1.3E-12 2.7E-17 101.6 11.6 121 16-152 9-143 (394)
227 PRK04004 translation initiatio 99.4 2.1E-12 4.5E-17 104.5 13.2 118 15-150 2-136 (586)
228 PRK05124 cysN sulfate adenylyl 99.4 1.5E-12 3.2E-17 103.2 12.1 124 13-152 21-175 (474)
229 PF10662 PduV-EutP: Ethanolami 99.4 3.3E-13 7E-18 89.5 7.0 101 20-150 2-102 (143)
230 PLN03127 Elongation factor Tu; 99.4 2.2E-12 4.7E-17 101.5 12.8 121 14-151 56-191 (447)
231 TIGR00503 prfC peptide chain r 99.4 3.2E-12 6.9E-17 102.3 13.7 119 17-152 9-147 (527)
232 KOG0394 Ras-related GTPase [Ge 99.4 6.3E-13 1.4E-17 90.3 8.2 124 17-152 7-133 (210)
233 TIGR00437 feoB ferrous iron tr 99.4 2.3E-12 5.1E-17 104.4 12.8 114 26-152 1-114 (591)
234 KOG0091 GTPase Rab39, small G 99.4 9.4E-13 2E-17 87.8 8.6 130 19-159 8-138 (213)
235 PRK10512 selenocysteinyl-tRNA- 99.4 6.7E-12 1.5E-16 102.1 15.3 117 21-152 2-119 (614)
236 COG2229 Predicted GTPase [Gene 99.4 1E-11 2.3E-16 84.5 13.6 132 17-163 8-148 (187)
237 PRK13351 elongation factor G; 99.4 3.2E-12 6.9E-17 105.8 13.4 120 16-152 5-140 (687)
238 TIGR00483 EF-1_alpha translati 99.4 3.6E-12 7.8E-17 100.1 12.8 121 16-152 4-156 (426)
239 PRK00741 prfC peptide chain re 99.4 4.7E-12 1E-16 101.3 13.3 120 17-153 8-147 (526)
240 cd04165 GTPBP1_like GTPBP1-lik 99.4 6.9E-12 1.5E-16 90.3 12.7 116 21-152 1-153 (224)
241 cd01873 RhoBTB RhoBTB subfamil 99.4 4.9E-12 1.1E-16 89.3 11.7 115 19-151 2-134 (195)
242 PLN03126 Elongation factor Tu; 99.4 4.2E-12 9.1E-17 100.4 12.4 122 15-152 77-212 (478)
243 PRK05506 bifunctional sulfate 99.4 6.4E-12 1.4E-16 103.0 12.8 122 15-152 20-172 (632)
244 TIGR02034 CysN sulfate adenyly 99.4 5E-12 1.1E-16 98.6 11.6 117 20-152 1-148 (406)
245 TIGR01393 lepA GTP-binding pro 99.4 9.6E-12 2.1E-16 100.9 13.3 119 18-152 2-137 (595)
246 KOG0395 Ras-related GTPase [Ge 99.4 6.6E-12 1.4E-16 88.5 9.9 128 18-159 2-130 (196)
247 KOG0075 GTP-binding ADP-ribosy 99.4 3.2E-12 6.9E-17 83.9 7.5 126 18-163 19-146 (186)
248 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.5E-11 7.7E-16 86.8 12.7 112 16-152 36-148 (225)
249 PRK05433 GTP-binding protein L 99.3 2.9E-11 6.2E-16 98.3 13.1 120 17-152 5-141 (600)
250 PTZ00141 elongation factor 1- 99.3 3.3E-11 7.1E-16 94.9 12.2 117 17-149 5-157 (446)
251 PTZ00416 elongation factor 2; 99.3 1E-11 2.2E-16 104.4 9.8 121 14-150 14-157 (836)
252 TIGR03680 eif2g_arch translati 99.3 4.1E-11 8.9E-16 93.5 11.7 120 18-152 3-149 (406)
253 KOG1954 Endocytosis/signaling 99.3 2.6E-11 5.6E-16 91.0 10.0 130 17-152 56-226 (532)
254 PTZ00258 GTP-binding protein; 99.3 4.7E-11 1E-15 91.8 11.6 93 16-114 18-126 (390)
255 cd01900 YchF YchF subfamily. 99.3 2.8E-11 6E-16 89.3 9.8 86 22-113 1-102 (274)
256 TIGR00490 aEF-2 translation el 99.3 6.9E-12 1.5E-16 104.0 7.3 121 14-151 14-152 (720)
257 PRK04000 translation initiatio 99.3 7.4E-11 1.6E-15 92.1 12.4 122 16-152 6-154 (411)
258 PLN00116 translation elongatio 99.3 5.5E-11 1.2E-15 100.2 11.3 121 14-150 14-163 (843)
259 COG1163 DRG Predicted GTPase [ 99.3 2.7E-11 5.9E-16 89.4 8.3 91 16-114 60-151 (365)
260 PRK09601 GTP-binding protein Y 99.3 9.2E-11 2E-15 89.3 11.0 89 20-114 3-107 (364)
261 KOG0090 Signal recognition par 99.2 2.7E-11 5.8E-16 84.4 6.8 121 18-153 37-161 (238)
262 KOG0070 GTP-binding ADP-ribosy 99.2 6.2E-11 1.3E-15 80.8 8.4 118 16-152 14-133 (181)
263 KOG4252 GTP-binding protein [S 99.2 6.3E-12 1.4E-16 85.2 2.8 124 15-154 16-141 (246)
264 TIGR03348 VI_IcmF type VI secr 99.2 7.5E-11 1.6E-15 102.4 10.0 139 20-170 112-272 (1169)
265 KOG0088 GTPase Rab21, small G 99.2 2.4E-11 5.2E-16 80.8 4.9 129 17-159 11-140 (218)
266 KOG0074 GTP-binding ADP-ribosy 99.2 1.2E-10 2.5E-15 76.1 8.0 128 14-161 12-141 (185)
267 COG2895 CysN GTPases - Sulfate 99.2 2.4E-10 5.1E-15 85.4 10.6 131 16-162 3-164 (431)
268 KOG0071 GTP-binding ADP-ribosy 99.2 1.3E-09 2.9E-14 71.1 12.8 128 17-163 15-145 (180)
269 cd01858 NGP_1 NGP-1. Autoanti 99.2 7.8E-11 1.7E-15 80.4 7.3 57 18-79 101-157 (157)
270 TIGR02836 spore_IV_A stage IV 99.2 5.2E-10 1.1E-14 85.8 12.3 132 16-152 14-195 (492)
271 KOG1145 Mitochondrial translat 99.2 6.7E-10 1.5E-14 87.1 13.0 119 17-153 151-269 (683)
272 PRK12740 elongation factor G; 99.2 3.5E-10 7.5E-15 93.6 12.2 111 25-152 1-127 (668)
273 KOG0097 GTPase Rab14, small G 99.2 4.7E-10 1E-14 73.3 9.5 132 17-162 9-141 (215)
274 PRK09602 translation-associate 99.2 1.3E-09 2.9E-14 84.5 13.4 89 20-114 2-113 (396)
275 KOG3883 Ras family small GTPas 99.1 1.2E-09 2.7E-14 72.3 10.8 121 17-152 7-133 (198)
276 KOG0083 GTPase Rab26/Rab37, sm 99.1 1.9E-11 4.2E-16 79.0 1.9 116 23-152 1-118 (192)
277 COG0532 InfB Translation initi 99.1 2.5E-09 5.3E-14 83.9 13.8 119 17-153 3-123 (509)
278 PF03193 DUF258: Protein of un 99.1 6E-11 1.3E-15 80.5 4.3 65 19-85 35-103 (161)
279 cd04178 Nucleostemin_like Nucl 99.1 2.1E-10 4.5E-15 79.4 7.0 58 17-79 115-172 (172)
280 PLN00043 elongation factor 1-a 99.1 1.5E-09 3.3E-14 85.6 12.6 122 16-150 4-158 (447)
281 COG5256 TEF1 Translation elong 99.1 2.2E-09 4.7E-14 81.8 12.8 132 16-163 4-171 (428)
282 KOG0448 Mitofusin 1 GTPase, in 99.1 6.4E-10 1.4E-14 89.0 10.4 133 18-163 108-287 (749)
283 cd01899 Ygr210 Ygr210 subfamil 99.1 9.9E-10 2.2E-14 82.9 10.8 87 22-114 1-110 (318)
284 KOG1707 Predicted Ras related/ 99.1 8.4E-10 1.8E-14 87.0 10.6 130 16-159 6-137 (625)
285 cd01851 GBP Guanylate-binding 99.1 9E-09 1.9E-13 74.2 14.8 71 16-86 4-77 (224)
286 KOG0447 Dynamin-like GTP bindi 99.1 1.5E-09 3.2E-14 85.4 11.4 134 15-152 304-494 (980)
287 KOG1532 GTPase XAB1, interacts 99.1 2.7E-10 5.8E-15 82.5 6.8 77 70-152 117-196 (366)
288 PRK07560 elongation factor EF- 99.1 3.3E-10 7.2E-15 94.3 8.2 121 15-151 16-153 (731)
289 KOG0393 Ras-related small GTPa 99.1 2.4E-10 5.2E-15 79.7 6.2 120 18-152 3-124 (198)
290 COG0480 FusA Translation elong 99.1 3E-09 6.5E-14 87.3 13.4 121 16-153 7-144 (697)
291 KOG0410 Predicted GTP binding 99.1 6E-10 1.3E-14 82.4 8.2 133 14-152 173-309 (410)
292 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 5.5E-10 1.2E-14 74.9 7.5 59 18-81 82-140 (141)
293 KOG2486 Predicted GTPase [Gene 99.1 2E-09 4.3E-14 78.1 10.2 127 17-152 134-263 (320)
294 PRK09563 rbgA GTPase YlqF; Rev 99.0 1.9E-09 4.2E-14 80.5 9.5 66 17-87 119-184 (287)
295 cd01849 YlqF_related_GTPase Yl 99.0 9.5E-10 2.1E-14 74.9 7.0 58 17-79 98-155 (155)
296 cd01855 YqeH YqeH. YqeH is an 99.0 6.2E-10 1.4E-14 78.3 6.2 58 18-79 126-190 (190)
297 COG5192 BMS1 GTP-binding prote 99.0 2.2E-09 4.9E-14 84.8 9.7 129 8-162 58-187 (1077)
298 PRK13768 GTPase; Provisional 99.0 1.8E-09 3.8E-14 79.3 8.1 80 70-152 98-177 (253)
299 KOG0462 Elongation factor-type 99.0 6.6E-09 1.4E-13 81.6 11.4 130 17-163 58-203 (650)
300 PRK12288 GTPase RsgA; Reviewed 99.0 2.3E-09 4.9E-14 81.9 8.8 61 20-84 206-272 (347)
301 COG1217 TypA Predicted membran 99.0 7.5E-09 1.6E-13 80.0 11.4 121 17-154 3-137 (603)
302 COG4917 EutP Ethanolamine util 99.0 1.3E-09 2.8E-14 69.8 6.1 104 20-152 2-105 (148)
303 COG1162 Predicted GTPases [Gen 99.0 2.5E-09 5.4E-14 79.0 8.4 65 18-84 163-231 (301)
304 TIGR03596 GTPase_YlqF ribosome 99.0 3.4E-09 7.3E-14 78.8 9.1 64 17-85 116-179 (276)
305 KOG0081 GTPase Rab27, small G 99.0 3E-10 6.4E-15 75.7 3.0 123 20-154 10-141 (219)
306 PTZ00327 eukaryotic translatio 99.0 1.2E-08 2.5E-13 80.6 11.9 122 16-152 31-186 (460)
307 cd01856 YlqF YlqF. Proteins o 99.0 2.7E-09 5.8E-14 73.8 7.4 60 16-80 112-171 (171)
308 PRK12289 GTPase RsgA; Reviewed 99.0 1.5E-09 3.3E-14 82.9 6.3 61 20-84 173-239 (352)
309 COG1161 Predicted GTPases [Gen 99.0 3.2E-09 6.9E-14 80.4 7.8 65 17-86 130-194 (322)
310 KOG1486 GTP-binding protein DR 98.9 5.5E-09 1.2E-13 75.0 8.0 96 12-114 55-150 (364)
311 PF00448 SRP54: SRP54-type pro 98.9 1.2E-09 2.7E-14 77.0 4.7 73 69-153 84-156 (196)
312 TIGR00157 ribosome small subun 98.9 2.9E-09 6.2E-14 77.8 6.3 61 19-84 120-186 (245)
313 PRK00098 GTPase RsgA; Reviewed 98.9 9.5E-09 2.1E-13 77.2 8.8 61 18-82 163-229 (298)
314 TIGR01425 SRP54_euk signal rec 98.9 8.2E-08 1.8E-12 74.9 13.7 124 17-152 98-254 (429)
315 COG1419 FlhF Flagellar GTP-bin 98.9 1.8E-08 3.8E-13 77.2 9.6 122 18-152 202-353 (407)
316 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.3E-08 2.9E-13 76.0 8.7 61 19-83 161-227 (287)
317 PRK14721 flhF flagellar biosyn 98.9 1.3E-08 2.9E-13 79.2 8.1 123 17-152 189-341 (420)
318 PRK14722 flhF flagellar biosyn 98.8 2.2E-08 4.7E-13 76.9 9.0 130 17-153 135-297 (374)
319 cd03229 ABC_Class3 This class 98.8 4.8E-08 1E-12 68.0 10.0 128 16-147 23-160 (178)
320 PF03029 ATP_bind_1: Conserved 98.8 3.1E-09 6.7E-14 77.2 4.2 78 70-152 92-171 (238)
321 TIGR03597 GTPase_YqeH ribosome 98.8 1.3E-08 2.9E-13 78.3 7.6 60 19-82 154-217 (360)
322 KOG0077 Vesicle coat complex C 98.8 3.1E-08 6.7E-13 66.6 8.3 117 18-152 19-136 (193)
323 PRK10416 signal recognition pa 98.8 6.1E-08 1.3E-12 73.3 10.8 126 17-152 112-274 (318)
324 PRK11889 flhF flagellar biosyn 98.8 2.3E-08 5E-13 76.8 8.1 122 18-152 240-392 (436)
325 PRK14723 flhF flagellar biosyn 98.8 4.1E-08 8.9E-13 81.2 9.8 124 18-152 184-338 (767)
326 COG3523 IcmF Type VI protein s 98.8 2.2E-08 4.9E-13 85.8 8.6 135 20-166 126-281 (1188)
327 KOG0076 GTP-binding ADP-ribosy 98.8 1.1E-08 2.4E-13 69.2 5.2 121 18-152 16-141 (197)
328 COG1126 GlnQ ABC-type polar am 98.8 3.5E-08 7.5E-13 69.5 7.8 127 16-146 25-194 (240)
329 cd01859 MJ1464 MJ1464. This f 98.8 3.4E-08 7.4E-13 67.2 7.6 57 18-79 100-156 (156)
330 cd03230 ABC_DR_subfamily_A Thi 98.8 2.1E-07 4.5E-12 64.5 11.0 126 16-147 23-154 (173)
331 COG0012 Predicted GTPase, prob 98.8 3.9E-08 8.4E-13 74.5 7.7 89 20-114 3-108 (372)
332 COG1131 CcmA ABC-type multidru 98.8 8.3E-08 1.8E-12 71.9 9.4 33 16-48 28-60 (293)
333 cd03222 ABC_RNaseL_inhibitor T 98.7 2.6E-07 5.7E-12 64.2 10.8 108 16-147 22-131 (177)
334 PRK13796 GTPase YqeH; Provisio 98.7 3.3E-08 7.1E-13 76.2 6.6 60 19-82 160-223 (365)
335 TIGR00092 GTP-binding protein 98.7 1E-07 2.2E-12 72.9 9.0 89 20-114 3-108 (368)
336 cd03216 ABC_Carb_Monos_I This 98.7 2.1E-07 4.6E-12 63.8 9.6 118 16-147 23-141 (163)
337 cd03246 ABCC_Protease_Secretio 98.7 1.5E-07 3.2E-12 65.2 8.9 126 16-147 25-155 (173)
338 PRK12724 flagellar biosynthesi 98.7 1E-07 2.2E-12 74.0 8.6 124 18-152 222-374 (432)
339 COG0488 Uup ATPase components 98.7 1.1E-07 2.3E-12 76.4 9.0 34 16-49 26-59 (530)
340 TIGR00064 ftsY signal recognit 98.7 1.6E-07 3.6E-12 69.6 9.3 76 67-152 153-232 (272)
341 PRK14845 translation initiatio 98.7 2.5E-07 5.4E-12 79.2 11.4 103 31-151 473-592 (1049)
342 KOG0468 U5 snRNP-specific prot 98.7 1.9E-07 4.1E-12 75.2 9.9 120 16-151 125-263 (971)
343 COG1116 TauB ABC-type nitrate/ 98.7 5.8E-07 1.3E-11 64.7 11.5 33 16-48 26-58 (248)
344 cd03228 ABCC_MRP_Like The MRP 98.7 1.7E-07 3.7E-12 64.8 8.4 126 16-148 25-155 (171)
345 cd03215 ABC_Carb_Monos_II This 98.7 2.6E-07 5.6E-12 64.6 9.3 127 16-147 23-163 (182)
346 KOG0458 Elongation factor 1 al 98.7 4.5E-07 9.7E-12 72.0 11.1 135 13-162 171-340 (603)
347 KOG1491 Predicted GTP-binding 98.7 1.4E-07 2.9E-12 70.5 7.8 93 16-114 17-125 (391)
348 COG1136 SalX ABC-type antimicr 98.7 1.5E-07 3.2E-12 67.4 7.8 34 15-48 27-60 (226)
349 COG3276 SelB Selenocysteine-sp 98.6 5.4E-07 1.2E-11 69.5 11.1 116 21-152 2-118 (447)
350 cd03231 ABC_CcmA_heme_exporter 98.6 7.6E-07 1.7E-11 63.2 11.2 33 16-48 23-55 (201)
351 PRK06995 flhF flagellar biosyn 98.6 1.7E-07 3.6E-12 74.3 8.5 122 18-152 255-406 (484)
352 PRK12727 flagellar biosynthesi 98.6 2.4E-07 5.2E-12 73.8 9.3 25 17-41 348-372 (559)
353 PRK12726 flagellar biosynthesi 98.6 1.4E-07 3.1E-12 72.3 7.7 123 17-152 204-357 (407)
354 COG4988 CydD ABC-type transpor 98.6 2.4E-07 5.3E-12 73.6 9.2 34 15-48 343-376 (559)
355 KOG3886 GTP-binding protein [S 98.6 1.5E-07 3.2E-12 66.9 7.0 124 19-153 4-132 (295)
356 PTZ00099 rab6; Provisional 98.6 6.5E-07 1.4E-11 62.3 10.3 72 68-152 28-100 (176)
357 cd00066 G-alpha G protein alph 98.6 3.8E-07 8.3E-12 69.1 9.8 81 60-152 153-243 (317)
358 PRK05703 flhF flagellar biosyn 98.6 1.2E-07 2.6E-12 74.4 7.3 123 18-152 220-372 (424)
359 PRK14974 cell division protein 98.6 1.6E-07 3.5E-12 71.4 7.6 73 68-152 222-294 (336)
360 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.6 1.3E-06 2.9E-11 58.7 11.3 102 16-147 23-126 (144)
361 PRK13538 cytochrome c biogenes 98.6 8.4E-07 1.8E-11 63.1 10.7 33 16-48 24-56 (204)
362 TIGR02868 CydC thiol reductant 98.6 1.8E-07 3.9E-12 75.6 8.1 33 17-49 359-391 (529)
363 cd03112 CobW_like The function 98.6 8.1E-07 1.8E-11 60.7 10.2 72 68-149 86-158 (158)
364 TIGR00960 3a0501s02 Type II (G 98.6 4.9E-07 1.1E-11 64.8 9.4 33 16-48 26-58 (216)
365 PRK13543 cytochrome c biogenes 98.6 1.2E-06 2.7E-11 62.7 11.5 33 16-48 34-66 (214)
366 cd03218 ABC_YhbG The ABC trans 98.6 6.2E-07 1.4E-11 64.9 10.0 33 16-48 23-55 (232)
367 cd03293 ABC_NrtD_SsuB_transpor 98.6 1.2E-06 2.7E-11 62.9 11.5 33 16-48 27-59 (220)
368 cd03223 ABCD_peroxisomal_ALDP 98.6 2.3E-06 4.9E-11 58.9 12.3 115 16-148 24-148 (166)
369 cd03213 ABCG_EPDR ABCG transpo 98.6 9.7E-07 2.1E-11 62.3 10.6 124 16-147 32-170 (194)
370 TIGR01188 drrA daunorubicin re 98.6 4E-07 8.7E-12 68.6 9.0 34 15-48 15-48 (302)
371 TIGR02673 FtsE cell division A 98.6 6.8E-07 1.5E-11 64.0 9.8 33 16-48 25-57 (214)
372 PRK13536 nodulation factor exp 98.6 7.6E-07 1.6E-11 68.1 10.5 33 16-48 64-96 (340)
373 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 8.9E-07 1.9E-11 63.5 10.3 33 16-48 27-59 (218)
374 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 1E-06 2.2E-11 64.1 10.4 34 15-48 26-59 (254)
375 cd03266 ABC_NatA_sodium_export 98.6 7.8E-07 1.7E-11 63.8 9.9 33 16-48 28-60 (218)
376 KOG3859 Septins (P-loop GTPase 98.6 3.1E-07 6.8E-12 67.0 7.7 127 18-152 41-191 (406)
377 PRK10908 cell division protein 98.6 9.1E-07 2E-11 63.7 10.1 33 16-48 25-57 (222)
378 PRK13537 nodulation ABC transp 98.6 8.4E-07 1.8E-11 67.0 10.3 32 17-48 31-62 (306)
379 KOG0072 GTP-binding ADP-ribosy 98.6 1.1E-07 2.5E-12 62.5 4.7 118 16-152 15-134 (182)
380 smart00275 G_alpha G protein a 98.6 1.3E-06 2.9E-11 66.8 11.2 82 59-152 175-266 (342)
381 cd03262 ABC_HisP_GlnQ_permease 98.6 9.3E-07 2E-11 63.2 9.8 33 16-48 23-55 (213)
382 cd03264 ABC_drug_resistance_li 98.6 7.5E-07 1.6E-11 63.6 9.3 31 17-48 24-54 (211)
383 TIGR01189 ccmA heme ABC export 98.6 1.7E-06 3.7E-11 61.2 11.0 33 16-48 23-55 (198)
384 cd03269 ABC_putative_ATPase Th 98.6 1.2E-06 2.5E-11 62.6 10.2 33 16-48 23-55 (210)
385 cd03268 ABC_BcrA_bacitracin_re 98.6 1.1E-06 2.3E-11 62.7 10.0 33 16-48 23-55 (208)
386 COG3839 MalK ABC-type sugar tr 98.6 6E-07 1.3E-11 68.0 8.9 35 16-50 26-60 (338)
387 COG1124 DppF ABC-type dipeptid 98.5 1.9E-06 4.1E-11 61.9 10.9 34 16-49 30-63 (252)
388 cd03259 ABC_Carb_Solutes_like 98.5 1.6E-06 3.6E-11 61.9 10.7 33 16-48 23-55 (213)
389 cd03301 ABC_MalK_N The N-termi 98.5 2.1E-06 4.7E-11 61.3 11.3 33 16-48 23-55 (213)
390 PRK06731 flhF flagellar biosyn 98.5 5.7E-07 1.2E-11 66.4 8.4 123 18-152 74-226 (270)
391 cd03263 ABC_subfamily_A The AB 98.5 1.3E-06 2.8E-11 62.8 10.1 33 16-48 25-57 (220)
392 COG4108 PrfC Peptide chain rel 98.5 9.3E-07 2E-11 68.2 9.7 126 17-159 10-155 (528)
393 cd03217 ABC_FeS_Assembly ABC-t 98.5 1.1E-06 2.4E-11 62.3 9.6 28 15-42 22-49 (200)
394 PRK11247 ssuB aliphatic sulfon 98.5 2E-06 4.4E-11 63.3 11.3 33 16-48 35-67 (257)
395 KOG1144 Translation initiation 98.5 5.1E-07 1.1E-11 73.6 8.5 117 16-151 472-606 (1064)
396 cd03224 ABC_TM1139_LivF_branch 98.5 9.3E-07 2E-11 63.6 9.2 33 16-48 23-55 (222)
397 PRK11174 cysteine/glutathione 98.5 4.8E-07 1E-11 74.1 8.7 31 17-48 374-404 (588)
398 PRK12723 flagellar biosynthesi 98.5 4.5E-07 9.7E-12 70.2 7.9 123 18-152 173-327 (388)
399 KOG1673 Ras GTPases [General f 98.5 2.2E-07 4.8E-12 62.0 5.3 134 15-163 16-150 (205)
400 cd00267 ABC_ATPase ABC (ATP-bi 98.5 1.3E-06 2.8E-11 59.5 9.4 28 17-44 23-50 (157)
401 cd03292 ABC_FtsE_transporter F 98.5 1E-06 2.2E-11 63.1 9.2 33 16-48 24-56 (214)
402 TIGR01277 thiQ thiamine ABC tr 98.5 3E-06 6.4E-11 60.7 11.5 33 16-48 21-53 (213)
403 KOG1424 Predicted GTP-binding 98.5 2.4E-07 5.2E-12 72.5 6.0 62 19-85 314-375 (562)
404 TIGR03608 L_ocin_972_ABC putat 98.5 9.9E-07 2.1E-11 62.7 8.8 32 17-48 22-53 (206)
405 cd03298 ABC_ThiQ_thiamine_tran 98.5 2.5E-06 5.5E-11 60.9 10.9 34 15-48 20-53 (211)
406 cd03261 ABC_Org_Solvent_Resist 98.5 1.6E-06 3.4E-11 63.0 10.0 33 16-48 23-55 (235)
407 TIGR01288 nodI ATP-binding ABC 98.5 1.6E-06 3.6E-11 65.3 10.4 33 16-48 27-59 (303)
408 COG2274 SunT ABC-type bacterio 98.5 5.2E-07 1.1E-11 74.8 8.2 35 15-49 495-529 (709)
409 PRK11248 tauB taurine transpor 98.5 3.9E-06 8.4E-11 61.8 12.1 33 16-48 24-56 (255)
410 cd03225 ABC_cobalt_CbiO_domain 98.5 1.3E-06 2.8E-11 62.3 9.4 33 16-48 24-56 (211)
411 PRK13657 cyclic beta-1,2-gluca 98.5 5.9E-07 1.3E-11 73.6 8.5 32 17-48 359-390 (588)
412 cd03247 ABCC_cytochrome_bd The 98.5 8.2E-07 1.8E-11 61.8 8.0 125 16-147 25-156 (178)
413 PRK13540 cytochrome c biogenes 98.5 1.7E-06 3.6E-11 61.4 9.6 33 16-48 24-56 (200)
414 PRK10771 thiQ thiamine transpo 98.5 3.3E-06 7.3E-11 61.2 11.4 33 16-48 22-54 (232)
415 TIGR02857 CydD thiol reductant 98.5 6.8E-07 1.5E-11 72.3 8.6 33 16-48 345-377 (529)
416 COG0541 Ffh Signal recognition 98.5 9E-07 2E-11 68.4 8.6 123 16-150 97-252 (451)
417 cd03265 ABC_DrrA DrrA is the A 98.5 2.1E-06 4.5E-11 61.8 10.1 33 16-48 23-55 (220)
418 cd03294 ABC_Pro_Gly_Bertaine T 98.5 3.2E-06 6.9E-11 62.7 11.2 33 16-48 47-79 (269)
419 TIGR03522 GldA_ABC_ATP gliding 98.5 1.7E-06 3.6E-11 65.3 9.7 33 16-48 25-57 (301)
420 PRK11432 fbpC ferric transport 98.5 2.1E-06 4.5E-11 66.0 10.3 33 16-48 29-61 (351)
421 cd03232 ABC_PDR_domain2 The pl 98.5 2.7E-06 6E-11 59.9 10.2 27 17-43 31-57 (192)
422 TIGR02211 LolD_lipo_ex lipopro 98.5 1.9E-06 4.2E-11 61.9 9.7 33 16-48 28-60 (221)
423 cd03226 ABC_cobalt_CbiO_domain 98.5 2.5E-06 5.5E-11 60.6 10.1 33 16-48 23-55 (205)
424 COG1135 AbcC ABC-type metal io 98.5 7.2E-07 1.6E-11 66.1 7.4 129 15-146 28-200 (339)
425 cd03295 ABC_OpuCA_Osmoprotecti 98.5 2.3E-06 4.9E-11 62.5 10.1 33 16-48 24-56 (242)
426 cd03267 ABC_NatA_like Similar 98.5 4.8E-06 1E-10 60.6 11.7 33 16-48 44-76 (236)
427 PRK11650 ugpC glycerol-3-phosp 98.5 2.4E-06 5.2E-11 65.8 10.6 33 16-48 27-59 (356)
428 PRK11000 maltose/maltodextrin 98.5 2.7E-06 5.8E-11 65.9 10.8 33 16-48 26-58 (369)
429 COG1120 FepC ABC-type cobalami 98.5 1.3E-06 2.8E-11 63.8 8.5 34 15-48 24-57 (258)
430 PRK13539 cytochrome c biogenes 98.5 3.3E-06 7.2E-11 60.2 10.6 33 16-48 25-57 (207)
431 TIGR03797 NHPM_micro_ABC2 NHPM 98.5 9E-07 2E-11 73.8 8.7 34 16-49 476-509 (686)
432 TIGR00750 lao LAO/AO transport 98.5 2E-06 4.3E-11 64.8 9.7 26 16-41 31-56 (300)
433 cd03237 ABC_RNaseL_inhibitor_d 98.5 7.2E-06 1.6E-10 60.1 12.4 33 16-48 22-54 (246)
434 PRK13541 cytochrome c biogenes 98.5 4.1E-06 8.8E-11 59.1 10.8 33 16-48 23-55 (195)
435 KOG2485 Conserved ATP/GTP bind 98.5 8.7E-07 1.9E-11 65.6 7.4 70 16-87 140-214 (335)
436 PRK10790 putative multidrug tr 98.5 8.5E-07 1.8E-11 72.7 8.2 33 16-48 364-396 (592)
437 PRK10895 lipopolysaccharide AB 98.5 1.7E-06 3.6E-11 63.1 8.9 33 16-48 26-58 (241)
438 TIGR01184 ntrCD nitrate transp 98.5 5.1E-06 1.1E-10 60.2 11.3 32 17-48 9-40 (230)
439 COG0488 Uup ATPase components 98.4 1.1E-06 2.5E-11 70.6 8.5 49 12-60 341-389 (530)
440 TIGR03864 PQQ_ABC_ATP ABC tran 98.4 3.6E-06 7.8E-11 61.2 10.5 33 16-48 24-56 (236)
441 COG3840 ThiQ ABC-type thiamine 98.4 1.3E-06 2.9E-11 60.2 7.5 33 16-48 22-54 (231)
442 TIGR03410 urea_trans_UrtE urea 98.4 2E-06 4.3E-11 62.2 9.0 33 16-48 23-55 (230)
443 cd03238 ABC_UvrA The excision 98.4 2.4E-06 5.1E-11 59.4 8.9 27 15-41 17-43 (176)
444 KOG0467 Translation elongation 98.4 1.2E-06 2.5E-11 71.6 8.3 121 13-150 3-137 (887)
445 TIGR03265 PhnT2 putative 2-ami 98.4 2.8E-06 6.1E-11 65.3 10.1 32 17-48 28-59 (353)
446 COG1125 OpuBA ABC-type proline 98.4 7.2E-07 1.6E-11 64.5 6.1 36 15-50 23-58 (309)
447 cd03296 ABC_CysA_sulfate_impor 98.4 7E-06 1.5E-10 59.8 11.6 33 16-48 25-57 (239)
448 TIGR00958 3a01208 Conjugate Tr 98.4 8E-07 1.7E-11 74.3 7.3 32 17-48 505-536 (711)
449 COG0481 LepA Membrane GTPase L 98.4 1.5E-06 3.2E-11 67.8 8.1 128 17-160 7-151 (603)
450 PRK11144 modC molybdate transp 98.4 5E-06 1.1E-10 64.0 11.2 32 17-48 22-53 (352)
451 TIGR03375 type_I_sec_LssB type 98.4 8.6E-07 1.9E-11 74.0 7.5 32 17-48 489-520 (694)
452 PRK09493 glnQ glutamine ABC tr 98.4 3.1E-06 6.8E-11 61.6 9.6 33 16-48 24-56 (240)
453 cd03258 ABC_MetN_methionine_tr 98.4 3.1E-06 6.8E-11 61.3 9.5 33 16-48 28-60 (233)
454 PRK09452 potA putrescine/sperm 98.4 4.2E-06 9.2E-11 64.8 10.7 32 17-48 38-69 (375)
455 TIGR02204 MsbA_rel ABC transpo 98.4 8.6E-07 1.9E-11 72.4 7.3 33 16-48 363-395 (576)
456 TIGR03740 galliderm_ABC gallid 98.4 8.1E-06 1.7E-10 58.8 11.6 33 16-48 23-55 (223)
457 TIGR02203 MsbA_lipidA lipid A 98.4 8.9E-07 1.9E-11 72.3 7.3 33 16-48 355-387 (571)
458 PRK09435 membrane ATPase/prote 98.4 4.8E-06 1E-10 63.3 10.6 26 16-41 53-78 (332)
459 PRK11629 lolD lipoprotein tran 98.4 3.7E-06 8.1E-11 61.0 9.7 33 16-48 32-64 (233)
460 PRK13548 hmuV hemin importer A 98.4 4.6E-06 1E-10 61.5 10.3 33 16-48 25-57 (258)
461 PRK11264 putative amino-acid A 98.4 5.6E-06 1.2E-10 60.7 10.7 33 16-48 26-58 (250)
462 TIGR01186 proV glycine betaine 98.4 3.3E-06 7.1E-11 65.1 9.8 34 15-48 15-48 (363)
463 PRK11607 potG putrescine trans 98.4 4.4E-06 9.6E-11 64.8 10.5 32 17-48 43-74 (377)
464 KOG0082 G-protein alpha subuni 98.4 4.1E-06 8.9E-11 63.6 10.0 88 53-152 180-277 (354)
465 PRK13648 cbiO cobalt transport 98.4 2.7E-06 5.9E-11 63.1 9.0 32 17-48 33-64 (269)
466 TIGR02142 modC_ABC molybdenum 98.4 6.8E-06 1.5E-10 63.3 11.5 32 17-48 21-52 (354)
467 TIGR01166 cbiO cobalt transpor 98.4 5.8E-06 1.2E-10 58.1 10.3 33 16-48 15-47 (190)
468 PRK11176 lipid transporter ATP 98.4 1E-06 2.2E-11 72.1 7.3 32 17-48 367-398 (582)
469 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 8.2E-07 1.8E-11 74.3 6.8 32 17-48 503-534 (710)
470 PRK10584 putative ABC transpor 98.4 5E-06 1.1E-10 60.1 10.0 33 16-48 33-65 (228)
471 PRK11124 artP arginine transpo 98.4 3.6E-06 7.7E-11 61.4 9.3 33 16-48 25-57 (242)
472 PRK09536 btuD corrinoid ABC tr 98.4 3.6E-06 7.8E-11 65.7 9.8 33 16-48 26-58 (402)
473 TIGR02314 ABC_MetN D-methionin 98.4 4.8E-06 1E-10 63.8 10.3 33 16-48 28-60 (343)
474 PRK10851 sulfate/thiosulfate t 98.4 6.4E-06 1.4E-10 63.4 11.0 32 17-48 26-57 (353)
475 KOG0096 GTPase Ran/TC4/GSP1 (n 98.4 4.2E-06 9.1E-11 57.7 8.8 118 17-152 8-129 (216)
476 cd03297 ABC_ModC_molybdenum_tr 98.4 7.8E-06 1.7E-10 58.5 10.8 31 17-48 22-52 (214)
477 PRK00771 signal recognition pa 98.4 2.2E-06 4.7E-11 67.5 8.4 71 69-151 176-246 (437)
478 PRK13644 cbiO cobalt transport 98.4 4.2E-06 9.1E-11 62.2 9.6 33 16-48 25-57 (274)
479 TIGR03258 PhnT 2-aminoethylpho 98.4 4.8E-06 1E-10 64.2 10.1 31 17-47 29-59 (362)
480 PRK15439 autoinducer 2 ABC tra 98.4 3.2E-06 6.9E-11 68.2 9.5 32 17-48 35-66 (510)
481 cd03257 ABC_NikE_OppD_transpor 98.4 8.7E-06 1.9E-10 58.8 10.8 34 15-48 27-60 (228)
482 PRK11153 metN DL-methionine tr 98.4 4.7E-06 1E-10 63.9 9.7 33 16-48 28-60 (343)
483 PRK13635 cbiO cobalt transport 98.4 4.2E-06 9.2E-11 62.4 9.3 32 17-48 31-62 (279)
484 PRK14250 phosphate ABC transpo 98.4 5.7E-06 1.2E-10 60.3 9.7 33 16-48 26-58 (241)
485 PRK11614 livF leucine/isoleuci 98.4 4.1E-06 8.9E-11 60.9 9.0 33 16-48 28-60 (237)
486 cd03233 ABC_PDR_domain1 The pl 98.4 1.1E-05 2.4E-10 57.3 10.9 29 16-44 30-58 (202)
487 cd03300 ABC_PotA_N PotA is an 98.4 1.1E-05 2.3E-10 58.6 11.0 33 16-48 23-55 (232)
488 KOG0058 Peptide exporter, ABC 98.3 1.7E-06 3.8E-11 70.5 7.4 35 15-49 490-524 (716)
489 TIGR00968 3a0106s01 sulfate AB 98.3 1E-05 2.2E-10 58.9 10.8 33 16-48 23-55 (237)
490 PRK10070 glycine betaine trans 98.3 6E-06 1.3E-10 64.5 10.1 33 16-48 51-83 (400)
491 PRK11160 cysteine/glutathione 98.3 2.3E-06 4.9E-11 70.0 8.1 33 16-48 363-395 (574)
492 TIGR03873 F420-0_ABC_ATP propo 98.3 6.2E-06 1.3E-10 60.7 9.6 33 16-48 24-56 (256)
493 COG0050 TufB GTPases - transla 98.3 1.8E-06 3.9E-11 63.6 6.6 130 16-163 9-152 (394)
494 PRK10247 putative ABC transpor 98.3 6.2E-06 1.3E-10 59.5 9.4 33 16-48 30-62 (225)
495 PRK10789 putative multidrug tr 98.3 2.1E-06 4.6E-11 70.1 7.7 32 17-48 339-370 (569)
496 cd03369 ABCC_NFT1 Domain 2 of 98.3 5.3E-06 1.1E-10 59.1 8.9 33 16-48 31-63 (207)
497 PRK15177 Vi polysaccharide exp 98.3 1.5E-05 3.3E-10 57.0 11.2 33 16-48 10-42 (213)
498 PRK10575 iron-hydroxamate tran 98.3 6.4E-06 1.4E-10 61.0 9.5 33 16-48 34-66 (265)
499 PRK13632 cbiO cobalt transport 98.3 6.1E-06 1.3E-10 61.3 9.3 33 16-48 32-64 (271)
500 PRK13647 cbiO cobalt transport 98.3 4.5E-06 9.8E-11 62.1 8.6 33 16-48 28-60 (274)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.96 E-value=2.7e-29 Score=179.35 Aligned_cols=149 Identities=43% Similarity=0.721 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
++|+|+|.+|+||||++|+|+|...|..+......|..+....... .+..+.||||||+.+.....+....++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4899999999999999999999999888877777888888777777 899999999999998877777788889998888
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcccCCCCcccc
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGRECPKPLKVC 172 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (173)
+.+++|+++||++.. +++..+...++.+.+.|+.+.+.+++||+|++|.+.++ .+++|+++..++.|+++
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~l 149 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQEL 149 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhHH
Confidence 889999999999999 99999999999999999999999999999999999985 58889886444455543
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.95 E-value=2.9e-27 Score=167.21 Aligned_cols=147 Identities=53% Similarity=0.822 Sum_probs=125.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|.+|+||||++|+|+|...+..+....+.|..+....... .+..+.++||||+.+.....+....++.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988777766667787777777777 888999999999998876666777788888888
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcccCCCCccc
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGRECPKPLKV 171 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (173)
+.+++|++++|+++. .++..+...++.+++.|+...+.++++|+||+|.+... ++++|+... ...|+.
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~~-~~~l~~ 147 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLENS-CEALKR 147 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHhc-cHHHHH
Confidence 889999999999998 59999999999999999998889999999999999874 888888873 344544
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.92 E-value=3.9e-24 Score=157.83 Aligned_cols=152 Identities=23% Similarity=0.274 Sum_probs=110.4
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.......+|+++|.+|+||||++|+|+|...+.... ....+.......... .+..+.||||||+.+.....+ +.
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e----~~ 106 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYIND----QA 106 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHH----HH
Confidence 334567899999999999999999999987643322 112222222233334 788999999999998532222 22
Q ss_pred HHHHHh--ccCCceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcccCCCCcc
Q 043441 94 VKCIGL--AKDGIHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGRECPKPLK 170 (173)
Q Consensus 94 ~~~~~~--~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (173)
...++. ...++|+++||.+.. .+++..+...++.+.+.|+...+.++++|+||+|.+.+++.++++|+.+ ....|+
T Consensus 107 ~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq 185 (313)
T TIGR00991 107 VNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALL 185 (313)
T ss_pred HHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHH
Confidence 333332 224789999996653 2788888999999999999999999999999999997777899999988 444555
Q ss_pred cc
Q 043441 171 VC 172 (173)
Q Consensus 171 ~~ 172 (173)
++
T Consensus 186 ~~ 187 (313)
T TIGR00991 186 RV 187 (313)
T ss_pred HH
Confidence 43
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.89 E-value=4.7e-22 Score=157.87 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=111.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+|+|++|+||||++|+|+|...+...... ..|+......... .+..+.||||||+.+..... ....++.+.
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~-~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~ 192 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFG-MGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSS 192 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCC-CCceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHH
Confidence 34578999999999999999999998877655332 3444444333444 67899999999999874432 233444444
Q ss_pred HHhc--cCCceEEEEEeecCC-CCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc-----ccHHHHhcccCCCC
Q 043441 97 IGLA--KDGIHAVLVGFSVRS-RFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE-----ETLEDYLGRECPKP 168 (173)
Q Consensus 97 ~~~~--~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-----~~~~~~~~~~~~~~ 168 (173)
+..+ ..++|++|+|..... ....++..+++.|.+.||.++|.+++||+||+|.+.+++ .++++|+.+ +...
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~ 271 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHI 271 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHH
Confidence 4333 236899999988752 233467799999999999999999999999999997543 689999988 4444
Q ss_pred cccc
Q 043441 169 LKVC 172 (173)
Q Consensus 169 l~~~ 172 (173)
|+++
T Consensus 272 Lq~~ 275 (763)
T TIGR00993 272 VQQA 275 (763)
T ss_pred HHHH
Confidence 5544
No 5
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=140.26 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=108.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.....++++|++++|||||+|.|+|... +..++.+.|+......+...+...++++||||+..+ ...+++.|.+.
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~ 78 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKA 78 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHH
Confidence 3457899999999999999999999887 555666677777766666657889999999999975 57788889999
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+...+.++|+++||+++...+...+...++.++.. ..|+++++||.|+....
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~ 130 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK 130 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence 99999999999999999977999998888888772 27899999999999875
No 6
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.87 E-value=6.3e-21 Score=138.77 Aligned_cols=137 Identities=26% Similarity=0.280 Sum_probs=101.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
......+|+|+|.+|+|||||+|+|+|...+... ...+.|.......... .+..+.+|||||+.+..... ....++.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~-~~~~~~~ 103 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQ-RVNRKIL 103 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhH-HHHHHHH
Confidence 4567799999999999999999999998765443 2334555555555555 77889999999999763221 1222333
Q ss_pred HHHHhcc--CCceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 95 KCIGLAK--DGIHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 95 ~~~~~~~--~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
..+..+. ..+|+++++.... .+++..+..+++.|.+.|+...+.++++|+||+|...+++
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 3333222 3578888887664 2677888899999999999988899999999999997654
No 7
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.83 E-value=3.3e-19 Score=115.83 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||+|+|++......+. ..+.|.......... .+..+.++||||+.+...... ....+.......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~-~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDN-DGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHH-HHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhH-HHHHHHHHHHHH
Confidence 68999999999999999999865433332 234555554445555 788889999999987532222 112333344444
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
..+|++++|+++.......+...+++++ ...|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 7889999999987533444556666663 22899999998
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=2.8e-19 Score=136.49 Aligned_cols=124 Identities=24% Similarity=0.200 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
+.|++||.+++|||||+|.|++....... ..++.|.+..+....+ .+..+.+|||+|+.+. ..+.+..++...+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence 78999999999999999999998864433 4567888888888888 8888999999999963 335677788888888
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++|++|||+|....++..+....++++.. +.|+++|+||+|-...
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~ 127 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchh
Confidence 88899999999999988999999998888832 2899999999998843
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=3e-19 Score=120.62 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+++|||||+|+|+|.... -...++.|.........+ .+..+.++|+||.++...... .+++...+ ..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~--ee~v~~~~-l~ 75 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE--EERVARDY-LL 75 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH--HHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc--HHHHHHHH-Hh
Confidence 7899999999999999999998853 334677888877777777 789999999999987543321 11121111 12
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcc
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEE 155 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~ 155 (173)
...+|+++.|+|++ .+..+ ..++.++.+. ..|+++++||+|+....+.
T Consensus 76 ~~~~D~ii~VvDa~-~l~r~-l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 76 SEKPDLIIVVVDAT-NLERN-LYLTLQLLEL-----GIPVVVVLNKMDEAERKGI 123 (156)
T ss_dssp HTSSSEEEEEEEGG-GHHHH-HHHHHHHHHT-----TSSEEEEEETHHHHHHTTE
T ss_pred hcCCCEEEEECCCC-CHHHH-HHHHHHHHHc-----CCCEEEEEeCHHHHHHcCC
Confidence 46789999999998 54333 3444455544 2899999999999976543
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=5.4e-18 Score=126.78 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=87.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
....|+++|++|||||||+|+|+|..... .++...|+...........+..+.++||||+.... ..+.+.+...+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~ 78 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAA 78 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHH
Confidence 45789999999999999999999977532 22233333333333332245689999999998643 33445555566
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
...+..+|++++|+|+++.++..+...++.+... ..|+++|+||+|+..
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~ 127 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK 127 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence 6677889999999999866776666665555531 278999999999984
No 11
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=5.4e-18 Score=125.38 Aligned_cols=121 Identities=19% Similarity=0.175 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||+|+|++.... ..++.+.|+...........+..+.++||||+.... ......+.+.+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~--~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS--ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe--ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 6899999999999999999997742 222333333333333333255679999999998642 23344455555567
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..+|++++|+|+++..+. +..+++.+.. ...|+++|+||+|+...
T Consensus 77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-----~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQN-----LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred HhhCCEEEEEEECCCCCch-HHHHHHHHHh-----cCCCEEEEEECeeCCCH
Confidence 7889999999999854433 3344444433 23789999999999743
No 12
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=9.7e-18 Score=123.15 Aligned_cols=132 Identities=19% Similarity=0.184 Sum_probs=94.5
Q ss_pred ccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH-H
Q 043441 11 ELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-V 89 (173)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~-~ 89 (173)
.+|+-.+..+++++.|++++|||||++.+++... .-++.+..|......+... +..++++|||||+.+....... .
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHH
Confidence 3466667889999999999999999999999875 3444444566666666666 8889999999999985432222 2
Q ss_pred HHHHHHHHHhccCCceEEEEEeecCCCCCHH---HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 90 GMEIVKCIGLAKDGIHAVLVGFSVRSRFPQE---EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+... ...+-.++|+|++|.+..+... +..+++.++..|. .|+++|+||.|..+.
T Consensus 237 E~qAi~---AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 237 ERQAIL---ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred HHHHHH---HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 222222 2222347899999998655433 4566777777654 689999999998855
No 13
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=4.3e-17 Score=112.68 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=95.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGME 92 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~---~~~~~~ 92 (173)
.+..+-|+++|.+++||||+||+|++......-...++.|......... ..+.++|.||+.-+.... +.|...
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHH
Confidence 3466789999999999999999999966433334556777777665542 338899999999766544 334444
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..++..-. ...++++++|+...+...+.++++++.+. . .|+++|+||+|++..
T Consensus 97 i~~YL~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~~---~--i~~~vv~tK~DKi~~ 150 (200)
T COG0218 97 IEEYLEKRA-NLKGVVLLIDARHPPKDLDREMIEFLLEL---G--IPVIVVLTKADKLKK 150 (200)
T ss_pred HHHHHhhch-hheEEEEEEECCCCCcHHHHHHHHHHHHc---C--CCeEEEEEccccCCh
Confidence 444443322 36788999999878888899999999886 2 789999999999986
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1.8e-17 Score=112.55 Aligned_cols=121 Identities=23% Similarity=0.243 Sum_probs=84.2
Q ss_pred EEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccC
Q 043441 23 VFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKD 102 (173)
Q Consensus 23 ~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (173)
+++|.+|+|||||+|.|++....... ...+.|.......... .+..+.++||||+.+... .....+........+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 47999999999999999987532111 2233444444445555 677899999999987432 234444444455667
Q ss_pred CceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 103 GIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 103 ~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.+|++++++++.+..+..+....+.+++. ..|+++|+||+|+....
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKEE 121 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCChH
Confidence 78999999999866666665555555542 27899999999998753
No 15
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=4.3e-17 Score=123.97 Aligned_cols=123 Identities=21% Similarity=0.236 Sum_probs=85.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc-cceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
..+++++|.+|+|||||+|+|++.... ..++.. .|.......... ++..+.+|||||+.+.. ..+...+.+.+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~---~~l~~~~~r~~ 125 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK---GSLEKAMVRCA 125 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc---ccHHHHHHHHH
Confidence 348999999999999999999987642 222222 333322233344 67789999999997532 22344555555
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|+|..+.+...+..+++.+.+. ..+.++|+||+|+...
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCccc
Confidence 5567889999999999867777666666666543 1567889999998644
No 16
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.8e-17 Score=113.29 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=94.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+|+|+|.+|+|||.|+..+.+...........++....+...+.. +...++||||+|. ++++.+.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~g-k~iKlQIWDTAGQ-----------ERFrtit 75 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDG-KTIKLQIWDTAGQ-----------ERFRTIT 75 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecc-eEEEEEeeecccc-----------HHHhhhh
Confidence 447899999999999999999988775444444444444444333433 4458999999994 4778888
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
..+|+++|+||+|+|+++.-+-+. ..|++++....... .+.++|.||+|+.+....+.++
T Consensus 76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~ 136 (205)
T KOG0084|consen 76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEE 136 (205)
T ss_pred HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHH
Confidence 899999999999999995544442 56777776665443 6999999999999765444443
No 17
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=1.4e-16 Score=111.06 Aligned_cols=128 Identities=19% Similarity=0.272 Sum_probs=83.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
......+++++|.+|+|||||+|.|++...........+.|.....+.. . ..+.+|||||+........ ...++.
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~-~~~~~~ 88 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKE-EKEKWQ 88 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChh-HHHHHH
Confidence 3467789999999999999999999986521111122334444443322 2 3689999999876433221 112222
Q ss_pred HHHHh---ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGL---AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~---~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..... ....++++++|++++.+++..+...++.+... ..|+++++||+|++..
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence 22222 22346899999999877887777666555432 2789999999999854
No 18
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=8e-17 Score=109.29 Aligned_cols=121 Identities=25% Similarity=0.242 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+++++|++|+|||||++++++....... ...+.+.......... .+..+.++||||+.+.....+ .........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence 58999999999999999999987632112 2233344443344444 567899999999987543222 111122224
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++..+|++++|+|+++..+..+...+.. ....|+++|+||+|+...
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence 5668899999999986665555444333 122789999999999865
No 19
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=6.2e-17 Score=110.60 Aligned_cols=123 Identities=21% Similarity=0.191 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+|+++|++|+|||||+|.+++......... ...+.......... .+..+.++||||+....... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEEEc-CCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 47899999999999999999998764322211 11222222222222 45689999999998653221 222333444
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.....+|.+++|+++++..........+.+... ..|.++++||+|+..
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence 566788999999999855555555555555443 268999999999984
No 20
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.75 E-value=5.7e-17 Score=111.58 Aligned_cols=125 Identities=24% Similarity=0.177 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE-FVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~-~~~~~~~~~~~ 98 (173)
++|+++|.+|+|||||+|+|++...... .....|.......... ++..+.+|||||+.+.....+ .+.... +.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~---~~ 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQA---IT 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHH---HH
Confidence 5799999999999999999998764211 1122344444444444 567899999999864322111 111111 11
Q ss_pred hccCCceEEEEEeecCCCCC---HHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFP---QEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....+|++++|+|+++..+ .....+++.+.+.+. ..|+++|+||+|+....
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTFE 129 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCchh
Confidence 11223578999999975433 223455666655432 37999999999997653
No 21
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=9.3e-17 Score=123.80 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=82.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
-|+|||.++||||||+|+|++... .-...+..|.......+...+...++++||||+.........+...+.+ .
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~ 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence 599999999999999999998764 2222333444444444555234579999999998765444445555553 4
Q ss_pred cCCceEEEEEeecCC---C-CCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRS---R-FPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++++++|+|++. . .......+++.+......-...|.++|+||+|+...
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 557799999999861 1 112224454555443221123789999999998754
No 22
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=9e-17 Score=110.66 Aligned_cols=127 Identities=19% Similarity=0.147 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.+|||||+.+.......+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999876322221 122232222233344 66778999999998653221111111111112
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+..+|++++|+|+.+..+......++.+.. . ..|+++++||+|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILE---E--GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh---c--CCCEEEEEeccccCCc
Confidence 34567899999999986666555444443332 1 2789999999998866
No 23
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.74 E-value=5.9e-17 Score=111.66 Aligned_cols=125 Identities=19% Similarity=0.153 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.|+++|.+|+|||||+|+|.+... ..+ .....|.......... .+. .+.++||||+.+.....+.....+. .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~-~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~----~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIA-DYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFL----R 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-ccc-CCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHH----H
Confidence 589999999999999999998653 111 1122333333333444 444 8999999998653222211222222 2
Q ss_pred ccCCceEEEEEeecCCC-CCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSR-FPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+..+|++++|+|+++. -+.. ...+++.+.+........|+++|+||+|+...
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 23467999999999843 1222 23555555554221124789999999998765
No 24
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2e-16 Score=119.79 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
.|+|||.++||||||+|+|++... .....+..|.......+.+.++..++++||||+.+.......+..++.+ .
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr----h 233 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK----H 233 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH----H
Confidence 489999999999999999998653 2222233455555544554355689999999998755444444444443 4
Q ss_pred cCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++++++|+|+++.-+.++ ..+.+.+......-...|+++|+||+|+...
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 456799999999984333332 3444445443221123799999999998754
No 25
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=1.3e-16 Score=125.30 Aligned_cols=122 Identities=22% Similarity=0.226 Sum_probs=94.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||+|.|++....... ..++.|.........+ .+..+.+|||||+... ...+...+...+..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 4899999999999999999987632212 2345666666666666 7889999999998642 233455666666677
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..+|++++|+|+.+.++..+....+++++. ..|+++|+||+|....
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE 122 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence 8889999999999878888887877777763 2789999999998764
No 26
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=1.7e-16 Score=121.05 Aligned_cols=129 Identities=22% Similarity=0.154 Sum_probs=85.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|+|++...+... ....|.......+.++.+..+.++||||+... ..+...+.+...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~t 262 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRAT 262 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHH
Confidence 35589999999999999999999997643222 22344444445555545678999999998531 112333344443
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHH-HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEE-AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+ ..+..+|++++|+|+++.....+. .+.+.+.+. +. ...|+++|+||+|+...
T Consensus 263 l-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 263 L-EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE 316 (351)
T ss_pred H-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh
Confidence 3 346688999999999855544432 233344443 22 12789999999998754
No 27
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=1.7e-16 Score=109.00 Aligned_cols=119 Identities=10% Similarity=0.138 Sum_probs=76.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+|+++|++|+|||||++++.+.......... ............ .+ ..+.+|||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT--IGVDFTMKTLEI-EGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc--cceEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHH
Confidence 478999999999999999999875532211111 112222233333 33 378999999943 23334
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...+++.+|++++|+++++..+... ..+++.+..... ...|+++|.||+|+....
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence 4456778999999999984433222 355555554322 236899999999987553
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.73 E-value=1.7e-16 Score=109.29 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=75.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+|+++|++|+|||||++++++... .....+.. ........+.. .+ ..+.+|||||... +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~-~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTI-GIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCc-cceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHH
Confidence 47999999999999999999998763 22222111 11112222233 33 4689999999442 2223
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...++..+|++++|+|+++..+... ..+++.+..... ...|+++|.||+|+.+..
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKR 124 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence 3456778999999999974332222 344444444322 236899999999998643
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=2.8e-16 Score=124.46 Aligned_cols=126 Identities=23% Similarity=0.196 Sum_probs=92.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
...++|+++|.+|+|||||+|+|++....... ..++.|.........+ .+..+.+|||||+.... ......+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDA---KGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcc---hhHHHHHHHH
Confidence 34578999999999999999999987642222 2344555555555556 77889999999986321 2244455555
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..++..+|++|+|+|+++..+..+..+.+.++.. ..|+++|+||+|+...
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERG 161 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCcc
Confidence 56677789999999999977777776666666542 3799999999998643
No 30
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.73 E-value=1.9e-16 Score=108.67 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=75.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|++|+|||||++++++...........+............ ....+.+|||||... +......
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~~~~~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN-KEVRVNFFDLSGHPE-----------YLEVRNE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC-eEEEEEEEECCccHH-----------HHHHHHH
Confidence 3799999999999999999998774322211111111111122211 235788999999642 2233345
Q ss_pred ccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcc---cccceEEEEEeCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGK---KVFDYMIVVFTGGDELE 151 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~~iv~tk~D~~~ 151 (173)
+++.++++++|+|.+++-+.. ...+++.+...... ....|+++|.||+|+..
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 678899999999998443222 23455555554332 12378999999999874
No 31
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=3.1e-16 Score=111.46 Aligned_cols=129 Identities=23% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
++..+|+++|++|+|||||+|.+++........ ...|.........+.....+.+|||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 456899999999999999999999976422221 223333333344442334899999999865321 2222223332
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHH-HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEE-AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+ ..+..+|++++|+|+++....... .+.+.+... +. ...|+++|+||+|+...
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLDD 168 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCCh
Confidence 2 245678999999999855444432 333444433 21 12689999999999765
No 32
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=2.3e-16 Score=124.02 Aligned_cols=122 Identities=22% Similarity=0.198 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
++|+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+.... ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 57999999999999999999987642222 2344555555555666 77899999999998622 1244455555566
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
++..+|++++|+|+.+.++..+....+++++. ..|+++|+||+|...
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~ 123 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD 123 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence 77889999999999877888877777777654 278999999999654
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.73 E-value=2.5e-16 Score=108.27 Aligned_cols=119 Identities=11% Similarity=0.051 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+++++|.+|+|||||++++++...........+ ........... ....+.+|||||... +.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG--IDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 5899999999999999999998763221111111 11111222221 224789999999542 233334
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.+++.++++++|+|.++.-+.+. ..+++.+...... ..|+++|.||+|+....
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDER 122 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCccc
Confidence 56889999999999974322211 3344444433222 26899999999987653
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=2.3e-16 Score=108.49 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=74.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeE--EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+|+++|.+|+|||||++++.+... ..... .|.... ...... .+ ..+.+|||||.. ++..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~---~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~-----------~~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCP---HTIGVEFGTRIIEV-NGQKIKLQIWDTAGQE-----------RFRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCC---cccceeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHH
Confidence 5899999999999999999987653 22211 121111 112222 33 367999999943 3334
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....++++++++++|+|+++.-+.+. ..+++.+..... ...|+++|.||+|+....
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQR 123 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence 44456788999999999984432221 244444433322 236899999999987653
No 35
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=2.9e-16 Score=108.30 Aligned_cols=120 Identities=15% Similarity=0.069 Sum_probs=74.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+|+++|.+|+|||||++.+++...........+.+.......... ....+.+|||||.. ++.....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~-----------~~~~~~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-KQIKLQIWDTAGQE-----------SFRSITR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEECCCcH-----------HHHHHHH
Confidence 47999999999999999999998764222221112222112222211 23478999999943 3333445
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..+|++++|+|+++..+... ..++..++.... ...|+++|.||.|+...
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESR 124 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence 56778999999999984322221 233333333221 23789999999998854
No 36
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.72 E-value=3.3e-16 Score=107.01 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|++|+|||||++++++....... .+..+.......... ++ ..+.+|||||.. .+....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~-----------~~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYL-EDKTVRLQLWDTAGQE-----------RFRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHHHH
Confidence 37999999999999999999987642221 122222222222333 33 358999999943 223334
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+..+|++++|+++++..+... ..+++.+....+. ..|+++++||+|+...
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~ 120 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK 120 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc
Confidence 456778899999999984433222 3444444443222 3799999999999654
No 37
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=2.9e-16 Score=107.40 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=74.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+++++|++|+|||||++.+++.......... .+........... ....+.+|||||... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--eeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 37999999999999999999986632222111 1111111222221 224688999999542 223334
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+++.++++++|+|+++..+... ..++..++..... ..|++++.||+|+...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~ 120 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQ 120 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchh
Confidence 56778899999999985443332 3444444444322 3789999999998764
No 38
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=3.1e-16 Score=107.84 Aligned_cols=120 Identities=18% Similarity=0.115 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|.+|+|||||++++++... .....+.............. ....+.+|||||.... ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTYRQVISCSK-NICTLQITDTTGSHQF-----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCcchheEEEEEEECC-EEEEEEEEECCCCCcc-----------hHHHHH
Confidence 5899999999999999999998663 22222222222222222222 3346889999997642 112224
Q ss_pred ccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHccc-ccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKK-VFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~~~iv~tk~D~~~~ 152 (173)
++..++++++|++.++..+.. ...+++.+.+..+.. ...|+++|.||+|+...
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 123 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK 123 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc
Confidence 566789999999998554433 245666666654322 34799999999998753
No 39
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.72 E-value=3.6e-16 Score=107.47 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+.++++|.+|+||||++|+|++...... ...+.|........... .+..+.+|||||... +....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence 4699999999999999999997664221 22233433333334331 256899999999643 12222
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+..+|++++|+++++.........++.+.. ...|+++|+||+|+...
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-----ANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEEceecccc
Confidence 335567899999999985554444444444433 22789999999998754
No 40
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.71 E-value=4.5e-16 Score=106.84 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=75.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+++++|++|+|||||++++++.... .... +..+.......+.. .+ ..+.+|||||.. ++...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~-----------~~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN-LDSK-STIGVEFATRSIQI-DGKTIKAQIWDTAGQE-----------RYRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCC-CccceEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHHH
Confidence 368999999999999999999987632 2211 11222222223333 33 368899999954 22233
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...+++.++++++|+|+++..+..+ ..+++.+.+.... ..|+++|.||.|+....
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHLR 124 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc
Confidence 3456678899999999984333222 2344444444222 27899999999987543
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=5.9e-16 Score=121.50 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=86.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++++|.+|+|||||+|+|++....... ...+.|.......... .+..+.+|||||+.......+.+.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 34578999999999999999999987632222 2233444443344444 677899999999976543322221111111
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
...+++.+|++++|+|+.+..+..+...++.+.+. ..|+++|+||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 22356788999999999978887777666555442 27899999999998
No 42
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.71 E-value=7.1e-16 Score=116.67 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
-.|+|||.++||||||+|+|++...- ....+..|.......+.+.+...+.++||||+.+.......+...+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh--- 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH--- 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH---
Confidence 35899999999999999999986531 1122233444444445552337899999999987554443444444433
Q ss_pred ccCCceEEEEEeecCCC---CCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSR---FPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++++++|+|+++. -..+ ...+.+++......-...|+++|+||+|+...
T Consensus 233 -ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 233 -IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred -HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 4567999999999843 1111 23344444433211134799999999999765
No 43
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.71 E-value=7.6e-16 Score=105.32 Aligned_cols=116 Identities=21% Similarity=0.303 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--ccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.|+++|.+|+|||||+|+|++... +... ...+.|............+..+.+|||||... +.....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEE-KKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhh-hccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 689999999999999999997531 1111 11233444444444442267899999999532 223333
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+..+|++++|+|+++.........+..+... + ..|+++++||+|+...
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~---~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-G---IKRGLVVLTKADLVDE 119 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-C---CCcEEEEEECccccCH
Confidence 456789999999999854444444444433222 2 1489999999998754
No 44
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=2.6e-16 Score=107.81 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=73.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+|+++|.+|+|||||++.+++.............+... ...... ....+.+|||||... +.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYK--HNAKFEGKTILVDFWDTAGQER-----------FQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEE--EEEEECCEEEEEEEEeCCCchh-----------hhhhhH
Confidence 378999999999999999998765321111111111111 112220 234678999999542 333444
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
.+++.+|++++|+|.++..+..+ ..+++.+++.. ...|+++|+||+|+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 57788999999999985444332 35555555432 237999999999974
No 45
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=7.5e-16 Score=114.04 Aligned_cols=127 Identities=21% Similarity=0.257 Sum_probs=82.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCC------CCccceeeEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEFV 89 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~v~DtpG~~~~~~~~~~~ 89 (173)
..+|+++|.+|+|||||+|+|++......... ....|........... ++ ..+.+|||||+.+...+.. .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~-~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD-C 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh-h
Confidence 36899999999999999999999876543321 1233333332222221 33 3699999999998654332 2
Q ss_pred HHHHHH--------HH-------H-h--ccCCceEEEEEeecCC-CCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 90 GMEIVK--------CI-------G-L--AKDGIHAVLVGFSVRS-RFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 90 ~~~~~~--------~~-------~-~--~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
.+.+.+ ++ . . .-.++|+++++++.+. .+...+...++.+.+ . .++++|+||+|++
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCcC
Confidence 222221 11 1 1 1225789999998863 566777777777764 2 7899999999998
Q ss_pred CC
Q 043441 151 ED 152 (173)
Q Consensus 151 ~~ 152 (173)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 64
No 46
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=9.8e-16 Score=118.93 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
.|+|+|.++||||||+|+|++... .....+..|.......+.+.++..++++||||+.+.......+..++.+ .
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLr----h 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLR----H 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHH----H
Confidence 799999999999999999998763 2222333455555555555236789999999998754444444444443 3
Q ss_pred cCCceEEEEEeecCCC--CCH--HHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 101 KDGIHAVLVGFSVRSR--FPQ--EEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~--~~~--~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
..+++++++|+|+++. ... ....+.+++..........|.+||+||+|+.
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 4567999999999732 111 1234444554432211347999999999964
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=4.6e-16 Score=106.94 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+++++|++|+|||||++.+++........ +..+.......... .+ ..+.+|||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 689999999999999999999866322111 11122222222333 33 3678999999442 23333
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..+++.++++++|+|+++.-+... ..+++.+...... ..|++++.||.|+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDKR 123 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhccccc
Confidence 456778999999999984322221 2344444433211 26899999999986543
No 48
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=5.5e-16 Score=121.89 Aligned_cols=129 Identities=19% Similarity=0.142 Sum_probs=87.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++++|.+|+|||||+|+|++........ ..+.|.......... .+..+.++||||+.......+.........
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 456899999999999999999999876432222 233444443344444 778899999999876433322221111111
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+.+.+|++++|+|+++..+..+...+..+.+. ..|+++++||+|+...
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-----GRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCCCH
Confidence 12356678999999999988887777666555542 2789999999999843
No 49
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=7.3e-17 Score=123.37 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=99.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+++++|.+++|||||+|+|+|........ ..+.|.+.-....++ ++..+.++||+|+..-..-.+.. +..+..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~--E~~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESV--EKYSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECCCCCcccccccce--EEEeeh
Confidence 56999999999999999999999987643332 234555555555666 89999999999998643222211 111111
Q ss_pred --HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 98 --GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 98 --~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
......++++++|+|++..++..+...+..+.+.- .+++||+||||+++.+..+.+++-+.
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~k~~ 315 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEFKKK 315 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHHHHH
Confidence 12455679999999999899999988888888762 67999999999998754456655444
No 50
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.70 E-value=7.2e-16 Score=104.46 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|++|+|||||++.+++...........+.+.......... ....+.+||+||.. .+......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~-----------~~~~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-KTVKLQIWDTAGQE-----------RFRSITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-EEEEEEEEecCChH-----------HHHHHHHH
Confidence 3799999999999999999998775332111111222111111111 23578899999964 23334445
Q ss_pred ccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
++..++++++|+++.+.-+... ..++..+..... ...|+++++||+|+.
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 6778899999999984221111 234444444321 237999999999996
No 51
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.70 E-value=7.3e-16 Score=110.48 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeE--EEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
+++++|.+|+|||||++.+++... ..... .|.... ........ ...+.+|||||.. .....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~---~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYK---QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKM 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCC---CceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHH
Confidence 789999999999999999997653 22221 222212 22233312 3578999999943 22333
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc-cccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK-KVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~iv~tk~D~~~~~ 153 (173)
...+++.+|++++|+|+++.-+.+. ..+++.+.+.... ....|+++|.||+|+....
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~ 125 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR 125 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc
Confidence 4456789999999999984433332 3466666665432 1224789999999987543
No 52
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=9.1e-16 Score=105.01 Aligned_cols=119 Identities=15% Similarity=0.065 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+++++|++|+|||||+|++++...........+.+.......... ....+.+|||||.. ++......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~D~~G~~-----------~~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAGQE-----------RYRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCchH-----------HHHHHHHH
Confidence 5899999999999999999998774321222222112122222222 23478899999943 22333344
Q ss_pred ccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+++.+|++++|+++++.-+-. ...+++.+..... ...|++++.||.|+...
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESK 121 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc
Confidence 677889999999997332222 2344455555432 23689999999998743
No 53
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=1.4e-15 Score=119.61 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
.|+|||.++||||||+|+|++.... ....+..|.......+.. .+..++++||||+.+.......+..++.+ .
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLr----h 233 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLR----H 233 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHH----H
Confidence 5899999999999999999987642 222334455555555555 66789999999998754444444444443 3
Q ss_pred cCCceEEEEEeecCCCC----CHHH-HHHHHHHHHHHc---------ccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRF----PQEE-EAALHSWQTLFG---------KKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~----~~~~-~~~~~~l~~~~~---------~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++++++|+|+++.- ...+ ..+.+.|..... .....|.+||+||+|+.+.
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 45679999999997311 1111 222233333221 1123799999999998754
No 54
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=6.8e-16 Score=106.94 Aligned_cols=120 Identities=12% Similarity=0.124 Sum_probs=78.0
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.......+++++|++|+|||||++++++... . .. ..|.......... ++..+.+|||||... +
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~-~~---~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~ 71 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-D-TI---SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------L 71 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-C-Cc---CCccccceEEEEE-CCEEEEEEECCCCHH-----------H
Confidence 3445568999999999999999999998643 1 11 1222223334444 567899999999642 2
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
...+..+++.+|++++|+|+++.-+.. ....++.+.+.. ....|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLD--DCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 233345677899999999998442222 122233333221 123799999999998754
No 55
>PRK11058 GTPase HflX; Provisional
Probab=99.70 E-value=9.7e-16 Score=119.44 Aligned_cols=128 Identities=20% Similarity=0.105 Sum_probs=83.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
..+.|+++|++|||||||+|+|++...+... ..+.|.+.......+.....+.++||||+... ........+....
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl 271 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL 271 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH
Confidence 3468999999999999999999997654222 22344444444555533348899999999542 1233334444433
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHH-HHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEA-ALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....+|++++|+|+++........ +.+.+.+. .. ...|+++|+||+|+...
T Consensus 272 -~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 272 -QETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLDD 324 (426)
T ss_pred -HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCCc
Confidence 4567899999999998554444432 33344443 22 13789999999998753
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.70 E-value=9.6e-16 Score=104.79 Aligned_cols=117 Identities=20% Similarity=0.110 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+|+++|.+|+|||||++.+++.... ....+. ............ .....+.+|||||.. ++....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKT-IGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCc-EEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHhH
Confidence 6999999999999999999986532 222111 111111122222 123578999999943 233334
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..+++.++++++|+++.+.-+... ..+++.+.... ...|+++|+||.|+....
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccccc
Confidence 456788999999999974322221 23344343322 237999999999987653
No 57
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=7.1e-16 Score=109.34 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.|+++|..|+|||||++.+.... |.....+ ..........+.. ++ ..+.+|||+|.. ++.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~-Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe-----------~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKS-GVGVDFKIKTVEL-RGKKIRLQIWDTAGQE-----------RFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCcCCC-cceeEEEEEEEEE-CCEEEEEEEEeCCCch-----------hhHHHHH
Confidence 58999999999999999998765 3222211 1111222223333 33 578999999954 3344445
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.++++++++++|+|.+++-+-+. ..+++.+...... ..|+++|.||+|+...+
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~~ 121 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDR 121 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECccccccc
Confidence 67889999999999985544333 3455555444222 37999999999986543
No 58
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.70 E-value=5.1e-16 Score=109.84 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcc---ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGV---TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+|+++|.+|+|||||+|+|+|......+....+. +.... .+.......+.+|||||+.+.....+. +.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~----~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDD----YLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHH----HHHH
Confidence 57999999999999999999996644333322221 11111 111112357899999999865433222 2211
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+.++|+++++. .. +++..+..+++.+.+. + .++++|+||+|+...
T Consensus 76 --~~~~~~d~~l~v~-~~-~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 --MKFSEYDFFIIIS-ST-RFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLS 122 (197)
T ss_pred --hCccCcCEEEEEe-CC-CCCHHHHHHHHHHHHh-C----CCEEEEEecccchhh
Confidence 2356778888764 33 7888888888888775 2 679999999999754
No 59
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.70 E-value=1e-15 Score=104.42 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+++++|++|+|||||++++++....... ....+........... ....+.+|||||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 37999999999999999999986642211 1111122222222221 223688999999432 222233
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..+|++++|+|.++..+.+. ..+++.+...... ..|+++++||+|+...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~ 120 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ 120 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 45678899999999974433222 3444555554433 3799999999998854
No 60
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.70 E-value=1e-15 Score=119.87 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=84.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..++.+++++|++|+|||||+|+|++....... ..++.|.........+ ++..+.+|||||+.+.....+... ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~g---i~ 274 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERLG---IE 274 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHHH---HH
Confidence 346689999999999999999999986532122 2234455554555566 778899999999976432212111 11
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....+++.+|++++|+|+++..+.++. ++..+.. . ..|+++|+||+|+...
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---S--KKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---C--CCCEEEEEECccCCCc
Confidence 223456788999999999866655543 4333321 2 2789999999998654
No 61
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.69 E-value=1.1e-15 Score=108.37 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
...+|+++|++|+|||||++.+.+...........+ .......+... ....+.+|||||... +...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEINGERVKLQIWDTAGQER-----------FRTI 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccc--ceeEEEEEEECCEEEEEEEEeCCCchh-----------HHHH
Confidence 458999999999999999999998663211111111 11111222221 224688999999542 2233
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...+++.++++++|+|+++.-+... ..+++.+.... ...|+++|.||+|+....
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERK 126 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc
Confidence 3456778899999999985432221 23444444332 236899999999987643
No 62
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=8.7e-16 Score=108.11 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|++|+|||||++.+++.........+ ............. .+ ..+.+|||||.. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIA-TVGIDFRNKVVTV-DGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCC-cccceeEEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 37999999999999999999876632111111 1111111111222 22 468899999943 233333
Q ss_pred HhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|+|+++..+.. -..++..+.+.... ..|+++|+||.|+...
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~ 121 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGE 121 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhc
Confidence 45677899999999998443322 24556666665433 2799999999998643
No 63
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=1e-15 Score=104.72 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|++|+|||||++++++....... ....+.......... .+ ..+.+|||||.. .+....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQE-----------RFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHHH
Confidence 37999999999999999999987642111 112222222233333 33 478899999943 222333
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|++.++..+.+. ..++..+...... ..|++++.||+|+...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~ 120 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQ 120 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccc
Confidence 456678899999999984333222 2344444333222 3799999999998764
No 64
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=5.5e-16 Score=106.55 Aligned_cols=118 Identities=11% Similarity=0.024 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc--CCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|++|+|||||++.|++......+ ......|.........+ .+..+.+|||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 4899999999999999999875321111 11122344444445555 678999999999753 223334
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
.++..++++++|+|+.+.-+ ......++.+.+.. ....|+++++||+|+...
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRER--FEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHhCCCCEEEEEEECchHHH--HHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 56778999999999973321 11222333333322 123799999999998654
No 65
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=1.3e-15 Score=105.10 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=76.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||++.+..... ... . +|.......... ....+.+|||||... +...
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~-~~~-~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~ 69 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTT-I---PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPL 69 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCC-ccc-c---CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3457999999999999999999986542 211 1 122222223334 667899999999642 3333
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELE 151 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~ 151 (173)
...++.++|++++|+|+++..+. ....+++.+.+... ...|+++|.||+|+..
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 34577889999999999854322 22334444443321 2368999999999864
No 66
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=3.7e-15 Score=105.06 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=79.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
....++|+++|.+|+|||||+|+|++...........+.|....... .+..+.+|||||+........ ...++..
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~ 95 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQK 95 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHH
Confidence 44678899999999999999999998652212222233444333322 246899999999875432221 1222222
Q ss_pred HHHh---ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGL---AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~---~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.... ....+++++++++.....+..+....+++.. ...++++++||+|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-----YGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-----cCCcEEEEEECcccCCH
Confidence 2222 2345578888888876666655555554432 12679999999999865
No 67
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=1.2e-15 Score=108.19 Aligned_cols=117 Identities=11% Similarity=-0.005 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcccee--eEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTST--CEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+|+++|.+|+|||||++.+++... ..... .|.. .....+... ....+.+|||||... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~---~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYK---ATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCC---CceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 3799999999999999999998653 22211 2222 112223331 234689999999642 233
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc--cccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK--KVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~ 151 (173)
....++++++++++|+|.++.-+-+. ..++..+...... ....|+++|.||.|+..
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 33457789999999999984433222 2344445443221 13369999999999863
No 68
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.69 E-value=2.5e-15 Score=103.57 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||++.+.+.. ..... .|.......... .+..+.++||||.. ++...+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~-----------~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGA-----------NFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEEE-CCEEEEEEECCCcH-----------HHHHHHHHH
Confidence 47999999999999999999762 22222 222222234444 67789999999954 233344567
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+..+|++++|+|+++..+.. ....++.+..... ...|+++|.||.|+...
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~--~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQ--EVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HcCCCEEEEEEECCchhHHH--HHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 78999999999998443222 2222333332221 23699999999998765
No 69
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=2e-16 Score=109.49 Aligned_cols=123 Identities=17% Similarity=0.080 Sum_probs=74.9
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccC
Q 043441 24 FVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKD 102 (173)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (173)
++|++|||||||+|+|++.... .......|.......... . +..+.++||||+.+.....+....++. ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK--VANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc--ccCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence 5899999999999999997641 111222333333334444 5 788999999998653222222222222 2345
Q ss_pred CceEEEEEeecCCCC-----CHH--HHHHHHHHHHHHcc-----cccceEEEEEeCCCCCCCC
Q 043441 103 GIHAVLVGFSVRSRF-----PQE--EEAALHSWQTLFGK-----KVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 103 ~~~~ii~v~~~~~~~-----~~~--~~~~~~~l~~~~~~-----~~~~~~~iv~tk~D~~~~~ 153 (173)
+++++++|+|+.+.. ... ...+...+...... ....|+++|+||+|+....
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 136 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE 136 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh
Confidence 689999999998442 221 12333344332211 1247999999999998653
No 70
>PLN03110 Rab GTPase; Provisional
Probab=99.69 E-value=1.8e-15 Score=108.47 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=78.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+...+|+++|++|+|||||++.+++...........+.. .....+... ....+.+|||||.. ++.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~--~~~~~v~~~~~~~~l~l~Dt~G~~-----------~~~ 75 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVE--FATRTLQVEGKTVKAQIWDTAGQE-----------RYR 75 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEE--EEEEEEEECCEEEEEEEEECCCcH-----------HHH
Confidence 3456899999999999999999999876422221111111 111222221 22478999999943 334
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....+++.++++++|+|.++.-+.+. ..+++.+...... ..|+++|.||+|+...
T Consensus 76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccc
Confidence 444567788999999999984433322 3455555554332 3789999999998644
No 71
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=114.42 Aligned_cols=128 Identities=23% Similarity=0.202 Sum_probs=87.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..++.+++++|.+|+||||+||+|++.+. ......+.+.....+......+..+++|||||+.+...... +.+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~----~~r~ 109 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA----EHRQ 109 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccC--ceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH----HHHH
Confidence 45678889999999999999999996443 22222222222222222221568999999999998654433 3344
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+...+.+.|.+++++++.++.-.-+...++.+.-.... .++++++|.+|+..+
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p 163 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP 163 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence 444667778999999999877666666666666554332 789999999999876
No 72
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=1.4e-15 Score=106.75 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|.+|+|||||++.+++...........+.+ ........ .+ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVD--FKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE--EEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhH
Confidence 379999999999999999999876422111111111 22222232 23 4678999999542 22233
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++.+|++++|+|.++.-+... ..+++.+...... ..|++++.||.|+...
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNN 120 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCccc
Confidence 456788999999999984332221 2344444443222 2689999999998754
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=1.4e-15 Score=107.64 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|.+|+|||||++.+++... .....+. .+.......+.. ++ ..+.+|||||....... ...+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt-~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPT-EHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-CcccCCc-cccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 3789999999999999999998663 2221111 111111122333 44 46789999998643211 122222222
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHc-ccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFG-KKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~iv~tk~D~~~~ 152 (173)
...+..+|++++|+|+++..+.+. ..+++.+.+... .....|+++|.||+|+...
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 335678999999999985433332 344444544431 1123799999999999654
No 74
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=9.1e-16 Score=117.74 Aligned_cols=130 Identities=25% Similarity=0.283 Sum_probs=98.1
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
...-..+.+++++|+|++|||||+|+|++......- ..++.|.+.-...... ++..+.++||+|+.++...-++.+-+
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIe 288 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIE 288 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHH
Confidence 334467899999999999999999999998864333 2346777777778888 99999999999999876655555432
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.. +.....+|.+++|+|++...+..+...++ .... ..|+++|.||.|+....
T Consensus 289 Rs---~~~i~~ADlvL~v~D~~~~~~~~d~~~~~----~~~~--~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 289 RA---KKAIEEADLVLFVLDASQPLDKEDLALIE----LLPK--KKPIIVVLNKADLVSKI 340 (454)
T ss_pred HH---HHHHHhCCEEEEEEeCCCCCchhhHHHHH----hccc--CCCEEEEEechhccccc
Confidence 22 23455779999999999666777766655 2222 27899999999999763
No 75
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.68 E-value=2.3e-15 Score=104.57 Aligned_cols=116 Identities=11% Similarity=0.047 Sum_probs=76.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+|+++|.+|+|||||++.+..... .. ..+|.......... .+..+.+|||||... +...+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~ 74 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGES-VT----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLW 74 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHH
Confidence 358999999999999999999964432 11 11233333333444 677899999999653 33344
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
..++++++++++|+|.++.-+. ....+++.+.+... ...|++||.||.|+...
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRI--DEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 4568899999999999843222 12233344433221 23689999999998654
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=2.2e-15 Score=103.96 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|++|+|||||++++++...........+.+... ..... .+ ..+.+|||||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEE--EEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 379999999999999999999876322211111111111 12222 33 3567999999542 22233
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
..+++.++++++++|+.+..+.+. ..+.+.+...... ....|+++|+||+|+..+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK 124 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc
Confidence 456778999999999974433222 2333333333221 123799999999999843
No 77
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.68 E-value=2e-15 Score=104.33 Aligned_cols=120 Identities=16% Similarity=0.112 Sum_probs=75.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH-H
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV-K 95 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~-~ 95 (173)
..+|+++|++|+|||||++++++.... ....+ ............. .+ ..+.+|||||... +. .
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~ 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEA-TIGVDFRERTVEI-DGERIKVQLWDTAGQER-----------FRKS 67 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-Ccccc-ceeEEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHHh
Confidence 468999999999999999999876532 22111 1111111222333 33 4789999999542 22 2
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....+++.+|++++|+|+++.-+... ..+++.+...... ...|+++|.||+|+....
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~ 125 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQI 125 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhhc
Confidence 23456788999999999984433332 3444444443211 237999999999987543
No 78
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=2.4e-15 Score=102.86 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||++.+..... ... .+|.......... ....+.+|||||... +...+..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~-~~~----~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI-VTT----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-ccc----CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 799999999999999999965442 221 1222222233444 667899999999642 33344567
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+.++|++++|+|.++..+. ....+++.+..... ...|++++.||.|+...
T Consensus 65 ~~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERI--GEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred hcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 8899999999999843221 22233344443221 23699999999998654
No 79
>PLN03118 Rab family protein; Provisional
Probab=99.68 E-value=2.5e-15 Score=107.39 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
++......+|+++|.+|+|||||++++++... . ...+. ............. ....+.+|||||....
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~-~~~~t-~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------- 75 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-E-DLAPT-IGVDFKIKQLTVGGKRLKLTIWDTAGQERF--------- 75 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-C-CcCCC-ceeEEEEEEEEECCEEEEEEEEECCCchhh---------
Confidence 33445568999999999999999999998653 1 21111 1112222223331 1246899999996532
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
......+++.+|++++|+|.++..+.... .+...+. .+......++++|.||+|+....
T Consensus 76 --~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~ 136 (211)
T PLN03118 76 --RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRESER 136 (211)
T ss_pred --HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccccC
Confidence 22223466788999999999843322221 1222222 22222235889999999987543
No 80
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.68 E-value=2.6e-15 Score=104.51 Aligned_cols=124 Identities=10% Similarity=-0.028 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe---------eCCceEEEEeCCCCCCCCCCcHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---------KDGQVVNVIDTPGLFDFSAGSEF 88 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---------~~~~~~~v~DtpG~~~~~~~~~~ 88 (173)
...+|+++|++|+|||||++.+.+...........+............ .....+.+|||||..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------- 74 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------- 74 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------
Confidence 347899999999999999999988653221111111111111111110 023578999999933
Q ss_pred HHHHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 89 VGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
++......+++.+|++++|+|+++.-+... ..++..+..... ....|+++|.||+|+....
T Consensus 75 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~ 136 (180)
T cd04127 75 ---RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQR 136 (180)
T ss_pred ---HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcC
Confidence 344445567789999999999984322222 344444443311 1236899999999987643
No 81
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=1.5e-15 Score=103.89 Aligned_cols=117 Identities=18% Similarity=0.159 Sum_probs=72.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|.+|+|||||++++++.... ....+....... ..... ++ ..+.+|||||.... ....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYR--KQIEV-DGQQCMLEILDTAGTEQF-----------TAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEE--EEEEE-CCEEEEEEEEECCCcccc-----------chHH
Confidence 58999999999999999999876532 221111111111 12222 33 45778999996542 2222
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++++++++++|++.++.-+.+. ..+++.+.+.... ...|+++|.||+|+...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE 121 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 345678899999999984433222 3444445443221 23689999999998654
No 82
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.68 E-value=1.3e-15 Score=104.06 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||++.+++...+..... .|.......... .+..+.+|||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 489999999999999999998653222222 222222222333 667899999999653 22333456
Q ss_pred cCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHc-ccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFG-KKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~iv~tk~D~~~~ 152 (173)
+..++++++|+|+++..+... ..+++.+..... .....|+++|+||+|+...
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 778999999999985433221 233333332210 0123799999999998754
No 83
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=1.1e-15 Score=106.41 Aligned_cols=115 Identities=15% Similarity=0.056 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+|+++|.+|+|||||++.+.+.. |.....+....... ..+... ....+.+|||+|... +.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~--~~~~~~~~~~~l~iwDt~G~~~-----------~~~~~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPETYVPTVFENYT--ASFEIDEQRIELSLWDTSGSPY-----------YDNVRP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCCCcCCceEEEEE--EEEEECCEEEEEEEEECCCchh-----------hhhcch
Confidence 579999999999999999998765 33322221111111 122221 234688999999543 222223
Q ss_pred hccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.+++.++++++|+|.+++-+-+. ..|++.+++..+ ..|+++|.||+|+..
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~ 119 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT 119 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence 46889999999999985555443 356666766532 379999999999753
No 84
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.68 E-value=1.6e-15 Score=106.09 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCC--------------CCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~ 86 (173)
+|+++|.+|+|||||+|+|++......... ..+.+.......... .+..+.++||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH-----
Confidence 489999999999999999988664322110 012233333334444 567899999999753
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 87 EFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+......++..+|++++|+|+...........+..+.. ...|+++++||+|+...
T Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE 129 (189)
T ss_pred ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch
Confidence 22223344557899999999986666555555555443 23789999999999863
No 85
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.67 E-value=1.4e-15 Score=106.34 Aligned_cols=118 Identities=16% Similarity=0.051 Sum_probs=78.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+...+|+++|.+|+|||||++.++.... .....+....... ...... ....+.+|||+|... +..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~--~~~~~~~~~~~l~iwDtaG~e~-----------~~~ 68 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPY-----------YDN 68 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeE--EEEEECCEEEEEEEEECCCchh-----------hHh
Confidence 3457899999999999999999987653 2222221111111 122220 234789999999542 233
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
....+++++|++++|+|.+++-+-+. ..|++.+.+..+ ..|+++|.||+|+.+
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~ 123 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 123 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhc
Confidence 33457889999999999986544443 356666766532 279999999999753
No 86
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.67 E-value=2.1e-15 Score=103.23 Aligned_cols=118 Identities=22% Similarity=0.168 Sum_probs=72.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+++++|.+|+|||||++++++.... ....+....... ..... .+ ..+.+|||||..+. ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TDYDPTIEDSYT--KQCEI-DGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceEE--EEEEE-CCEEEEEEEEECCCCcch-----------hHH
Confidence 468999999999999999999876532 222111111111 11222 33 36789999997642 122
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+++++.-+... ..+++.+...... ...|+++++||+|+...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc
Confidence 2345567899999999984332222 3344444443221 23699999999998754
No 87
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=3.8e-15 Score=103.36 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=76.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+|+++|++|+|||||++.+++..... . ..|.......... ....+.++||||... +....
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 76 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH--T---SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSW 76 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC--c---CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHH
Confidence 35789999999999999999998765321 1 1233333334444 678899999999653 23333
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
..++.++|++++|+|+++.-+. ....+++.+.+... ...|+++++||+|+...
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~--~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~ 131 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERL--PLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA 131 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC
Confidence 4566789999999999843221 12223333333221 23799999999998653
No 88
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=3.9e-15 Score=123.11 Aligned_cols=126 Identities=22% Similarity=0.205 Sum_probs=93.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+++|||||+|+|++....... ..++.|.........+ .+..+.+|||||+.... +.+...+...
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~ 347 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQ 347 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHH
Confidence 44578999999999999999999986532222 2344555555555555 67889999999987422 2244556666
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..++..+|++++|+|+++.+...+..+.+.++.. ..|+++|+||+|....
T Consensus 348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc
Confidence 66678889999999999877887777777776542 3799999999998653
No 89
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.67 E-value=2.6e-15 Score=102.85 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=73.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|++|+|||||++.+++.... ....+. ............ .+ ..+.+|||||... ......
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t-~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSHIST-IGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCCCCc-eeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhhHH
Confidence 6899999999999999999876642 221111 111111122333 33 4678999999542 222334
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.++..+|++++|+|.+++-+.+. ..+++.+..... ...|+++|.||.|+....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKR 121 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence 56778899999999985433222 344444444322 236899999999987553
No 90
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.67 E-value=2.7e-15 Score=105.43 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=78.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
...+|+++|..|+|||||+..+.... +.....+ ..........+.. ++ ..+.+|||+|... +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~-t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS-TESPYGY-NMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCC-cceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 45899999999999999999998754 3222211 1122222222333 33 5788999999642 333
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....+++++|++++|+|.+++.+.+. ..|++.+.+..+ ..|++||.||.|+...
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~ 125 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFK 125 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhc
Confidence 44456789999999999985544443 456666655432 3799999999998653
No 91
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.67 E-value=3.7e-15 Score=102.11 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCccccCCC-CccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGR-RAFKSRASS-SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|++|+|||||++++.+. ..+.....+ .+.................+.+|||||.. .......
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHHHHHH
Confidence 7899999999999999999864 223222211 11111111122211134689999999943 2223334
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..+|++++|+|.++..+... ..+++.+.... ...|+++|.||+|+...
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK 122 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence 56778999999999984322221 34444444331 23799999999998654
No 92
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.67 E-value=2.1e-15 Score=106.38 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC-CCccccC-------------CCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGR-RAFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
.++|+++|.+++|||||+++|++. ..+.... ...+.+.......... ++..+.+|||||..+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~--- 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD--- 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH---
Confidence 468999999999999999999862 1222111 0122333333344455 677899999999753
Q ss_pred CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 85 GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+......+++.+|++++|+|+++........++..+.. . ..|+++|+||+|+...
T Consensus 78 --------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 --------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---L--GLKPIVVINKIDRPDA 132 (194)
T ss_pred --------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---c--CCCEEEEEECCCCCCC
Confidence 33334456778899999999985544433343333322 2 2689999999998754
No 93
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=3.2e-15 Score=104.67 Aligned_cols=117 Identities=9% Similarity=0.040 Sum_probs=75.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++++|.+|+||||+++.+.+...... ..|.......... .+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4568999999999999999999998653111 1122222233344 667899999999653 2333
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+|+++. ... ....+++.+.+.. ....|+++|+||.|+...
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~-~~~-~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDK-ERF-AESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred HHHHhCCCCEEEEEEECCcH-HHH-HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 34567889999999999843 211 1222233333321 123699999999998643
No 94
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=2e-15 Score=104.21 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||++++.+.. +.. ...|.......... .+..+.+|||||.... ...+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-FMQ----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-CCC----cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 58999999999999999998864 211 22333333344455 6778999999997532 2223345
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+..+|++++|+|.++.-+.. ...+++.+.+... ...|+++|.||.|+...
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred hccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 67889999999998432221 2233344443221 22689999999998643
No 95
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=3.2e-15 Score=118.46 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=85.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++++|.+|+|||||+|+|++....... ...+.|.......... .+..+.+|||||+....... ...+....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~ 284 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYAS 284 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHH
Confidence 34689999999999999999999987642211 2233444333334445 67788999999985421111 11122222
Q ss_pred H--HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 I--GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~--~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+ ..+++++|++++|+|+++..+..+...+..+.+ . ..|+++|+||+|+...
T Consensus 285 ~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~---~--~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 285 LRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE---A--GRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH---c--CCCEEEEEECcccCCh
Confidence 2 124678999999999997888777666555543 2 2789999999999754
No 96
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=1.9e-15 Score=108.54 Aligned_cols=117 Identities=14% Similarity=0.011 Sum_probs=76.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
....+|+++|.+|+|||||++.++.... ..... .|...... ..... ....+.+|||||... +
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~---~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~ 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC-CCccC---CccceeEEEEEEEECCeEEEEEEEECCCchh-----------h
Confidence 6678999999999999999999876542 22221 12212211 22221 235889999999653 2
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
......+++.++++|+|+|.+++.+... ..|++.+.+.. ...|+++|.||+|+..
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhh
Confidence 2333456788999999999985543332 35555565542 2379999999999853
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=5.2e-15 Score=101.75 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=74.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhcc
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAK 101 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (173)
|+++|.+|+|||||++.+.+.... .... +|.......... .+..+.+|||||... +......++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~---pt~g~~~~~i~~-~~~~l~i~Dt~G~~~-----------~~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVV---PTTGFNSVAIPT-QDAIMELLEIGGSQN-----------LRKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-cccc---ccCCcceEEEee-CCeEEEEEECCCCcc-----------hhHHHHHHH
Confidence 789999999999999999986532 2211 122222233444 667899999999654 222233567
Q ss_pred CCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 102 DGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 102 ~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+.+|++++|+|.++..+.. ....++.+........|+++|.||.|+....
T Consensus 66 ~~ad~ii~V~D~t~~~s~~--~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 66 SGSQGLIFVVDSADSERLP--LARQELHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred hhCCEEEEEEECCCHHHHH--HHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 7889999999998443222 2223334433222347999999999987653
No 98
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2e-15 Score=104.57 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=93.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
+.....+++++|.+|+|||+++-.+.......+-....+..-..+...... ....+++|||.|.. ++.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g-~~i~lQiWDtaGQe-----------rf~ 75 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG-KKIKLQIWDTAGQE-----------RFR 75 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC-eEEEEEEEEcccch-----------hHH
Confidence 455678999999999999999999887663222222223322222222222 33578999999944 678
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccH
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETL 157 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 157 (173)
.+..+++++++++++|+|.++.-+-+ ...|++.+.+.-... .+.++|.||+|+-+.+..+.
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~ 137 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSK 137 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccH
Confidence 88889999999999999998666554 367999999986654 89999999999887544333
No 99
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.66 E-value=4.5e-15 Score=102.84 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|..|+|||||++.+.+... .....+....... ..... .+ ..+.+|||||... +....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIEDAYK--QQARI-DNEPALLDILDTAGQAE-----------FTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcccceEE--EEEEE-CCEEEEEEEEeCCCchh-----------hHHHh
Confidence 6899999999999999999987653 2221111111111 12222 33 4688999999653 33334
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..++++++|++.+++.+... ..+.+.+.+... ....|+++|.||+|+...
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc
Confidence 456778899999999986655544 234455554321 223799999999998654
No 100
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.66 E-value=2.9e-15 Score=117.86 Aligned_cols=124 Identities=24% Similarity=0.260 Sum_probs=82.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+.+++++|.+|+|||||+|+|++....... ...+.|.......... .+..+.++||||+.++....+.. .+. .
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~~--gi~-~ 287 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEKI--GIE-R 287 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHHH--HHH-H
Confidence 45689999999999999999999987632111 2233454444455555 77889999999987532111111 111 1
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....+..+|++++|+|+++..+.++...+ .. ....|+++|+||+|+...
T Consensus 288 ~~~~~~~aD~il~VvD~s~~~s~~~~~~l---~~----~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 288 SREAIEEADLVLLVLDASEPLTEEDDEIL---EE----LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHHHhCCEEEEEecCCCCCChhHHHHH---Hh----cCCCCcEEEEEhhhcccc
Confidence 22356778999999999866555543332 22 122789999999998754
No 101
>PTZ00369 Ras-like protein; Provisional
Probab=99.66 E-value=3.1e-15 Score=105.16 Aligned_cols=122 Identities=18% Similarity=0.070 Sum_probs=75.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||++.+.+.... ....+.............. ....+.+|||||..+. ...
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~l 69 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDE-ETCLLDILDTAGQEEY-----------SAM 69 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECC-EEEEEEEEeCCCCccc-----------hhh
Confidence 45689999999999999999999876532 2222211111111112211 2235779999997653 112
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..++++++|+|+++.-+.+ ...+++.+.+.... ...|+++|.||+|+...
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE 125 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 234567889999999998543322 23444445443222 23689999999997544
No 102
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=3.2e-15 Score=102.12 Aligned_cols=119 Identities=17% Similarity=0.082 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+++++|++|+|||||++++++...........+.+.......... ....+.+|||||... +......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-----------~~~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG-KKVKLAIWDTAGQER-----------FRTLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC-EEEEEEEEECCCchh-----------hhhhhHH
Confidence 3799999999999999999998664222211111222222122211 235789999999542 2222334
Q ss_pred ccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+++.+|++++|++.++..+.+. ..+++.+..... ....|+++|.||+|+..
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKEN 120 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccc
Confidence 5678899999999974333222 234444444422 22368999999999873
No 103
>COG2262 HflX GTPases [General function prediction only]
Probab=99.66 E-value=3.2e-15 Score=112.97 Aligned_cols=135 Identities=21% Similarity=0.173 Sum_probs=96.4
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
....+..+.|.++|+++|||||++|+|++...+....- ..|.+.......+..+..+.+-||.||.+ .-++++...
T Consensus 186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L--FATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~A 261 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQL--FATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEA 261 (411)
T ss_pred hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccc--cccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHH
Confidence 34457789999999999999999999999887544433 34544455556664578999999999996 455666766
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+++.+... ..+|.++.|+|++++.-.........+...++.. ..|+++|+||.|++.+.
T Consensus 262 FksTLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~-~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 262 FKSTLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD-EIPIILVLNKIDLLEDE 320 (411)
T ss_pred HHHHHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC-CCCEEEEEecccccCch
Confidence 77666543 3789999999999663333333333333333332 27999999999999763
No 104
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.2e-15 Score=102.23 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=93.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC-CCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
....+++++|..++||||||+..+-.. |..... ..+..-...-..+.. ...++++|||+| +++++.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d-~~vrLQlWDTAG-----------QERFrs 86 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAG-----------QERFRS 86 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcC-cEEEEEEEeccc-----------HHHHhh
Confidence 345889999999999999999987544 222221 122222222222222 335899999999 457888
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHh
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYL 161 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 161 (173)
++..+++++.++|+|+|+++.-+-++ ..|++.+....+.+ ...+++|.||.|+.+.++.+.++--
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs~eEg~ 152 (221)
T KOG0094|consen 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVSIEEGE 152 (221)
T ss_pred hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhhHHHHH
Confidence 88999999999999999997766654 57777777665542 2578899999999988766665543
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=1e-14 Score=102.01 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=77.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|++|+|||||++.+..... .. . .+|.......... .+..+.+|||||.. .+...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~-~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~-----------~~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEV-VT-T---IPTIGFNVETVEY-KNLKFTMWDVGGQD-----------KLRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-cc-c---CCccccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 3458899999999999999999965442 11 1 1233333334444 67789999999964 23334
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
...+++++|++|+|+|+++.-+.. ...+++.+.+... ...|++||.||.|+...
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 456788999999999998432211 2233444443321 23689999999997643
No 106
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=2.2e-15 Score=106.00 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|.+|+|||||++.++... |.....+....... ..... .+. .+.+|||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~~~~~~t~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FVETYDPTIEDSYR--KQVVV-DGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCccCCCchHhhEE--EEEEE-CCEEEEEEEEECCCchh-----------hHHHHH
Confidence 48999999999999999998655 32222221111111 11222 333 588999999543 222333
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc-cccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK-KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~iv~tk~D~~~~ 152 (173)
.+++.+|++++|++.++.-+... ..+++.+.+.... ....|+++|.||+|+...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~ 121 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE 121 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence 46778899999999984433222 4555555554321 123689999999998654
No 107
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=7e-15 Score=101.65 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=75.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+++++|++|+|||||++.+.+..... ...|.......... .+..+.++||||... +...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-----ITPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 447899999999999999999999865311 11222222334444 678899999999542 2333
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
+..++..++++++|+|+.+.-+. .....++...... ....|+++++||+|+...
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRL--EEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 34556788999999999832111 1122222222211 123789999999998764
No 108
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=3.2e-15 Score=102.46 Aligned_cols=116 Identities=19% Similarity=0.154 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|++|+|||||++++++... .....+....... ..... .+ ..+.+|||||..... ....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~--~~~~~-~~~~~~l~i~Dt~g~~~~~-----------~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYR--KQIEI-DGEVCLLDILDTAGQEEFS-----------AMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEE--EEEEE-CCEEEEEEEEECCCcccch-----------HHHH
Confidence 799999999999999999997653 2222221111111 12222 23 467899999976421 1222
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..++++++|+++.+.-+.+. ..+.+.+.+.... ...|+++|.||+|+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 35667899999999984322221 2344444443222 23689999999998764
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=3e-15 Score=103.03 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+++++|.+|+|||||++++.+.... .......... ........ ....+.+|||||.... ...+...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEI-TIPADVTP-ERVPTTIVDTSSRPQD-----------RANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccce-EeeeeecC-CeEEEEEEeCCCchhh-----------hHHHhhh
Confidence 7899999999999999999886632 2211111111 11111111 3457889999997642 1112234
Q ss_pred cCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+..++++++|+++++..+... ..+++.+++.. . ..|+++|.||+|+....
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDGS 119 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccccc
Confidence 577899999999985443333 24556565542 2 37999999999997653
No 110
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.66 E-value=2.4e-15 Score=103.68 Aligned_cols=118 Identities=18% Similarity=0.067 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|++|+|||||+++|++.... ....+.............. ....+.+|||||...... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~D~~g~~~~~~-----------~~~~ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVTVDG-KQVNLGLWDTAGQEEYDR-----------LRPL 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECC-EEEEEEEEeCCCcccccc-----------cchh
Confidence 37999999999999999999987642 2211211111111112211 234789999999775311 1113
Q ss_pred ccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.++.+|++++|+|.++..+... ..++..+..... ..|+++|+||+|+....
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE 120 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence 4578899999999984322221 234444444322 38999999999988664
No 111
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=3.7e-15 Score=103.07 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE--EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+|+++|.+|+|||||++++++... ..... .|..... ...... ....+.+|||||... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYK---ATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCC---CceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 689999999999999999998763 32222 2221121 122221 234789999999542 33333
Q ss_pred HhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++++|++++|+|+++.-+.. ...+++.+.+.... ...|+++|.||.|+...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc
Confidence 45688999999999997432222 23444444332111 12578999999997654
No 112
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=3.6e-15 Score=101.68 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=71.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|.+|+|||||++++++.... ....+...... ...... .+ ..+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSY--RKQVVI-DGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheE--EEEEEE-CCEEEEEEEEECCCCcc-----------hHHHH
Confidence 57999999999999999999976532 22222111111 112222 33 3477899999653 22223
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
..++..++++++|++..+.-+... ..++..+.+... ....|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 346667899999999974332222 234444444321 12369999999999875
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.66 E-value=2.9e-15 Score=102.24 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+++++|.+|+|||||++.+....... . ..|.......... .+..+.+|||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-T----IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-c----CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 58999999999999999997655321 1 1232223334444 667899999999753 23333456
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
+.+++++++|+|+++..+.. ...+.+...+.. ....|+++|+||+|+...
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLG--TAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred hcCCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 77899999999998432111 112223322221 123799999999998754
No 114
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.66 E-value=4.3e-15 Score=101.42 Aligned_cols=114 Identities=10% Similarity=0.043 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|++|+|||||++.+.+...... . .|............+..+.+|||||... +......+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~---~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--I---PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--c---CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 489999999999999999998764321 1 1222222233332456899999999642 22333445
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+..+|++++|+|+++..+. .....++.+.+... ...|+++|+||+|+...
T Consensus 65 ~~~~~~iv~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 65 LENTDGLVYVVDSSDEARL--DESQKELKHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred hccCCEEEEEEECCcHHHH--HHHHHHHHHHHhchhhcCCCEEEEEECcccccC
Confidence 7788999999999843321 22223333333221 23799999999998643
No 115
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.65 E-value=2.6e-15 Score=103.44 Aligned_cols=114 Identities=19% Similarity=0.133 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEE--e-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--L-KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~-~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+|+++|++|+|||||++.++.... .... ..|......... . .....+.+|||||...... ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF-EKKY---VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------LR 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCC---CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------cc
Confidence 799999999999999999986552 2221 122222222221 1 0235789999999754211 11
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|+|.++..+... ..+++.+..... ..|+++|.||+|+...
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR 119 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc
Confidence 235668899999999984433222 345555555432 3899999999998743
No 116
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=1.5e-14 Score=101.06 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=78.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|..|+|||||++.+..... .. ..+|.......... .+..+.+|||||.. ++...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~----~~pt~g~~~~~~~~-~~~~~~i~D~~Gq~-----------~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VT----TIPTIGFNVETVEY-KNISFTVWDVGGQD-----------KIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-cc----ccCCcceeEEEEEE-CCEEEEEEECCCCH-----------HHHHH
Confidence 4457999999999999999999975442 11 12232233334444 67789999999953 33444
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+..+++++|++|+|+|+++.-+.. ...+++.+.+... ...|++|+.||.|+...
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 456788999999999998432221 2333444443321 23689999999998654
No 117
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.65 E-value=4.1e-15 Score=101.37 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+++++|.+|+|||||++++++... .. ...|.......... .+..+.+|||||.... ......+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VT----TIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CC----CCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 589999999999999999998762 21 12233333344444 6778999999996532 2223345
Q ss_pred cCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..+|++++|+|+++.-+... ..++..+..... ....|+++++||+|+...
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA 115 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence 667899999999984322111 222222222111 123799999999998865
No 118
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.65 E-value=3.6e-15 Score=101.40 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=73.8
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCC
Q 043441 24 FVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDG 103 (173)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (173)
|+|.+|+|||||+|++++...... ...+.|.......+.+ ++..+.+|||||+.+...... ...+....... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999998763222 2234455444455556 567899999999876433211 11222111111 58
Q ss_pred ceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 104 IHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 104 ~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+|++++|+|+. .... ...++..+.+ . ..|+++|+||+|+...
T Consensus 75 ~d~vi~v~d~~-~~~~-~~~~~~~~~~---~--~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 75 PDLIVNVVDAT-NLER-NLYLTLQLLE---L--GLPVVVALNMIDEAEK 116 (158)
T ss_pred CcEEEEEeeCC-cchh-HHHHHHHHHH---c--CCCEEEEEehhhhccc
Confidence 89999999998 3322 2233333332 1 2789999999999765
No 119
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=4e-15 Score=107.40 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=77.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
...+|+++|..|+|||+|++.+++.. |.....+........ .+... ....+.+|||+|... +...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~~~~--~i~~~~~~v~l~iwDTaG~e~-----------~~~~ 77 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFENYTA--GLETEEQRVELSLWDTSGSPY-----------YDNV 77 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeeeeEE--EEEECCEEEEEEEEeCCCchh-----------hHHH
Confidence 34789999999999999999998765 333222211111111 12220 235789999999542 3333
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
...+++++|++++|+|.++.-+-.. ..|++.+.+..+ ..|+++|.||+|+..
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~ 131 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 3457889999999999985544443 356666665432 268999999999753
No 120
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=6.5e-15 Score=101.59 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=74.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+...+++++|.+|+|||||++.+++...........+ ........... ....+.+|||||.. ++..
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~D~~G~~-----------~~~~ 69 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEVDGHFVTLQIWDTAGQE-----------RFRS 69 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--eEEEEEEEEECCeEEEEEEEeCCChH-----------HHHH
Confidence 3558999999999999999999987653221111111 11111122220 22467899999943 2333
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc--cccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK--KVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~ 151 (173)
....+++.+|++++|++.++.-+... ..++..+...... ....|+++|.||+|+..
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 44456778899999999974432222 2344444443221 12368999999999863
No 121
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.65 E-value=1.6e-15 Score=104.16 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|++|+|||||+++++.... .....+....... ..... .+ ..+.+|||||...... . .. .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~--~~~~~-~~~~~~~~i~D~~g~~~~~~--~----~~----~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYS--RQVTI-DGEQVSLEILDTAGQQQADT--E----QL----E 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhce--EEEEE-CCEEEEEEEEECCCCccccc--c----hH----H
Confidence 489999999999999999886542 2221121111221 12222 33 3578999999774100 0 11 1
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+++.+|++++|+|+++.-+-+. ..+++.+.+........|+++|.||+|+...
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 23556799999999984433222 3455555554321223789999999997544
No 122
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.65 E-value=4.8e-15 Score=101.67 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|.+|+|||||+++++... +.....+...... ...... . ...+.+|||||.... ....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSY--RKQVEV-DGQQCMLEILDTAGTEQF-----------TAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheE--EEEEEE-CCEEEEEEEEECCCcccc-----------hhHH
Confidence 579999999999999999998654 2222211111111 112233 3 335679999996532 2222
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|++.++.-+.++ ..+++.+..... ....|+++|.||+|+...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc
Confidence 346677899999999874333222 344444544321 123799999999998754
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=1.8e-14 Score=101.21 Aligned_cols=118 Identities=9% Similarity=-0.002 Sum_probs=77.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....+++++|++|||||||++.+.+.... . ...|.......... .+..+.++||||... ...
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~----~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~ 78 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-Q----HVPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARR 78 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-c----cCCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHH
Confidence 355788999999999999999999986531 1 11222223334445 677899999999542 223
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
.+..+++.++++++|+|.++.-+. .....++.+.+.. ....|+++++||+|+...
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 334566788999999999743111 1223344444332 133799999999998643
No 124
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.65 E-value=1.1e-15 Score=107.28 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=83.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCcccc----------------CCCCccceeeEEEEEE--eeCCceEEEEeCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGL 79 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~--~~~~~~~~v~DtpG~ 79 (173)
+..+|+++|..++|||||+++|++....... ....+.|......... . .+..+.++||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 4578999999999999999999864421110 0112344444445554 4 7889999999996
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+ +..........+|++++|+|+.+.+.......++.+... . .|+++++||+|+...
T Consensus 81 ~~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~---~--~p~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 81 ED-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL---G--IPIIVVLNKMDLIEK 137 (188)
T ss_dssp HH-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT---T---SEEEEEETCTSSHH
T ss_pred cc-----------eeecccceecccccceeeeeccccccccccccccccccc---c--cceEEeeeeccchhh
Confidence 52 222333446677999999999878887777777766554 2 679999999999943
No 125
>PLN03108 Rab family protein; Provisional
Probab=99.64 E-value=1e-14 Score=104.21 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=73.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
...+|+++|++|+|||||++.+++...........+.+.... .... .+ ..+.+|||||... +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~--~i~~-~~~~i~l~l~Dt~G~~~-----------~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--MITI-DNKPIKLQIWDTAGQES-----------FRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEE--EEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 357999999999999999999998653222111111111111 2222 23 3678999999542 222
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+|+++.-+... ..++..+...... ..|++++.||+|+...
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHR 126 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence 33345678899999999984332222 2344444433222 3789999999998754
No 126
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=8.8e-15 Score=100.74 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=74.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
...+++++|++|+|||||++.+.+..... ...+ ............. .+ ..+.+|||||... +..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGA-TIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-ceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 44899999999999999999998654321 1111 1111122222223 33 4678999999542 222
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....++..+|++++|+|.++..+... ..+++.+....... .|+++|.||.|+...+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAERR 128 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccc
Confidence 22345678899999999974322221 24444455443322 7889999999987543
No 127
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.64 E-value=8.5e-15 Score=103.75 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe----eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
+|+++|.+|+|||||++.+++...........+.+.......+.. .....+.+|||+|... +...
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~~~l 70 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------VKST 70 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------HHHH
Confidence 799999999999999999998764222211112222222222110 0223689999999653 3344
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHc-----------------ccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFG-----------------KKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-----------------~~~~~~~~iv~tk~D~~~~ 152 (173)
...+++++|++|+|+|.+++-+.+. ..|++.+...-. .....|+++|.||.|+.+.
T Consensus 71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 4567889999999999985544433 356555554211 0123699999999998765
No 128
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=2e-15 Score=106.42 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=79.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
..+++++|..++|||||+++|++...... .-...+.|.......... ++..+.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~---- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA---- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHH----
Confidence 36799999999999999999986411000 001234455554444544 67789999999965
Q ss_pred CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 85 GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.+...+......+|++++|+++...........+..+.+. + ..++++++||+|+..
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~ 132 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-G---VPYIVVFLNKADMVD 132 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCCC
Confidence 2333334556678999999999867776666666665553 1 134789999999974
No 129
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=1.3e-14 Score=98.09 Aligned_cols=120 Identities=23% Similarity=0.170 Sum_probs=77.5
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCC
Q 043441 24 FVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDG 103 (173)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (173)
++|++|+|||||+|+|++....... .....+...............+.++||||+.+.......... .+......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence 5899999999999999987643222 222333333334444323678999999999986544432222 22234567
Q ss_pred ceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 104 IHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 104 ~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+|++++++++.+........+. ..... ...|+++|+||+|+....
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~---~~~~~--~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLL---ELLRE--RGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHH---HHHHh--cCCeEEEEEEccccCChh
Confidence 7999999999855544444322 22211 237899999999998764
No 130
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.64 E-value=6.2e-15 Score=103.29 Aligned_cols=115 Identities=14% Similarity=0.031 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEE-EEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+|+++|.+|+|||||++.+++.... ... ..|...... ..... ....+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~---~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEY---VPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCC---CCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 37999999999999999999986632 221 122222211 12221 223689999999542 2222
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+|.++..+.+.. .++..+... . ...|+++|.||.|+...
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhhC
Confidence 33467889999999999854333321 244333332 1 23799999999998653
No 131
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=9.4e-15 Score=104.44 Aligned_cols=120 Identities=15% Similarity=0.044 Sum_probs=73.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+|+++|.+|+|||||++.+++....... .+..........+.... ...+.+|||||... +...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence 368999999999999999999986632111 11111111111222212 24788999999542 2233
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|+|.++.-+-.. ..+++.+.+.... ...++++|.||.|+...
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ 124 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc
Confidence 3456788999999999984432222 3444444443322 22578899999998764
No 132
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=2.2e-15 Score=107.07 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
++|+++|++|+|||||++.|.+........+ . ......... ..+..+.+|||||... ++..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s---~--~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS---I--EPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDK 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc---E--eecceEEEeecCCCCceEEEEECCCCHH-----------HHHH
Confidence 4689999999999999999998653222111 1 111111111 1356899999999663 2223
Q ss_pred HHhccCCc-eEEEEEeecCCCCCHHHHHHHHHHHHHHcc----cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGI-HAVLVGFSVRSRFPQEEEAALHSWQTLFGK----KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~-~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~iv~tk~D~~~~ 152 (173)
+..++..+ +++|+|+|+.+ .........+++.+++.. ....|++++.||.|+...
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~-~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSAT-FQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHhccCCEEEEEEECcc-chhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 33445565 99999999984 323333444444443321 124799999999998765
No 133
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2e-15 Score=103.00 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=86.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++|+|.+++|||||+-.+..........+..+..-..+.....- ....+.+|||.|... +...
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQER-----------y~sl 70 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQER-----------YHSL 70 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCccc-----------cccc
Confidence 3567999999999999999988776653222222222222222222221 335788999999663 4444
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
+..+|+++++.|+|+|+++.-+-. -+.|++.|++..+.+ ..+.+|.||+|+...+....++
T Consensus 71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~e 132 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEE 132 (200)
T ss_pred ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHH
Confidence 556899999999999998433322 267888888776543 5666899999999855444444
No 134
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.64 E-value=5.7e-15 Score=103.99 Aligned_cols=118 Identities=16% Similarity=0.027 Sum_probs=74.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+++++|..|+|||||+..++... |.....+.............. ....+.+|||+|... +.....
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~e~-----------~~~l~~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FPKEYIPTVFDNYSAQTAVDG-RTVSLNLWDTAGQEE-----------YDRLRT 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CCcCCCCceEeeeEEEEEECC-EEEEEEEEECCCchh-----------hhhhhh
Confidence 4689999999999999999998765 322222211111111111211 234689999999653 333344
Q ss_pred hccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+++++|++++|++.+++-+-+.. .+++.+.... ...|++||.||.|+...
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~ 122 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRND 122 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcC
Confidence 578899999999999854443332 2444444332 23799999999998543
No 135
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.64 E-value=3.5e-14 Score=102.63 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=87.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccC--CCC-------------------------------------------
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRA--SSS------------------------------------------- 52 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--~~~------------------------------------------- 52 (173)
..+.++++|++|+||||++++|+|...+..+. ...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 44689999999999999999999975322211 000
Q ss_pred ----ccceeeEEEEEEeeCCceEEEEeCCCCCCCC--CCcHHHHHHHHHHHHhccCC-ceEEEEEeecCCCCCHHH-HHH
Q 043441 53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS--AGSEFVGMEIVKCIGLAKDG-IHAVLVGFSVRSRFPQEE-EAA 124 (173)
Q Consensus 53 ----~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~ii~v~~~~~~~~~~~-~~~ 124 (173)
+.+...-...+..+....+.++||||+.... .........+.+.+..+... .+.+++|++++..+...+ ...
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0011111122223334679999999997532 11233455566666666664 458888999876766655 344
Q ss_pred HHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 125 LHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 125 ~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
.+++... ..++++|+||+|.++.. ....+.+++
T Consensus 185 a~~ld~~-----~~rti~ViTK~D~~~~~-~~~~~~~~~ 217 (240)
T smart00053 185 AKEVDPQ-----GERTIGVITKLDLMDEG-TDARDILEN 217 (240)
T ss_pred HHHHHHc-----CCcEEEEEECCCCCCcc-HHHHHHHhC
Confidence 4444332 27899999999999763 225555555
No 136
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.64 E-value=3.9e-15 Score=104.63 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=74.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+|+++|.+|+|||||++.+++.... ....+....... ...... ....+.+|||||.... .....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~--~~i~~~~~~~~l~i~Dt~G~~~~-----------~~l~~ 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYV--HDIFVDGLHIELSLWDTAGQEEF-----------DRLRS 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeE--EEEEECCEEEEEEEEECCCChhc-----------ccccc
Confidence 47999999999999999999886632 221111111111 112221 2247899999996542 11223
Q ss_pred hccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..++++++|++.++.-+... ..+++.+.... ...|+++|.||+|+...
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA 119 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence 46778999999999985433332 24566665532 23799999999998764
No 137
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=5.7e-15 Score=103.99 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+|+++|.+|+|||||++++++....... ...|..... ..... .+ ..+.+|||||.... ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY-----------EA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcC---cccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence 37999999999999999999986632111 112222111 12223 33 35679999996532 22
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
....++.++|++++|++.++.-+.+. ..+++.+... ....|+++|.||+|+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 22346778999999999984322221 3455555443 12378999999999864
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.63 E-value=1.5e-14 Score=102.57 Aligned_cols=124 Identities=21% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|+|++... ..+. .++.|... ..... . .+.+|||||+.......+...+.+...
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~-~~~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGK-RPGVTRKP--NHYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-CCceeeCc--eEEee-c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 4568999999999999999999998763 2222 22333322 22322 2 689999999754333222223333332
Q ss_pred H----HhccCCceEEEEEeecCCCCC-----------HHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 I----GLAKDGIHAVLVGFSVRSRFP-----------QEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~----~~~~~~~~~ii~v~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+ ......++++++|+|..+... ..+....+.+.. ...|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCc
Confidence 2 223445688999999863211 112222333322 12789999999998654
No 139
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.63 E-value=4.3e-15 Score=102.83 Aligned_cols=113 Identities=23% Similarity=0.168 Sum_probs=72.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
|+++|.+|+|||||++++++... .....+...... ...... ++. .+.+|||||..... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENY--SADVEV-DGKPVELGLWDTAGQEDYD-----------RLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeee--eEEEEE-CCEEEEEEEEECCCCcccc-----------hhchh
Confidence 58999999999999999998663 222222111111 112222 333 58999999965421 12224
Q ss_pred ccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++..+|++++|+|.++.-+-+. ..+++.+.+..+ ..|+++|.||+|+...
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~ 117 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRED 117 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhC
Confidence 6778999999999984433222 235555555432 3799999999998753
No 140
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=1.5e-14 Score=119.74 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=85.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+|+++|.+|+|||||+|+|++....... ...+.|.........+ ++..+.+|||||+...... ....+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~--~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHK--LTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCccc--chhHHHHHHH
Confidence 4589999999999999999999987631111 1233344333334445 7778899999998643221 1122222222
Q ss_pred --HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 --GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 --~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++.+|++++|+|+++..+..+...++.+.+. ..|+++|+||+|+...
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCCh
Confidence 2356789999999999978887776665555432 2789999999999764
No 141
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.63 E-value=1.3e-14 Score=98.72 Aligned_cols=116 Identities=18% Similarity=0.140 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|++|+|||||++++++.. +.....+.... ........ . ...+.+||+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIED--SYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhH--eEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 58999999999999999999876 32332222111 11222223 3 24678999999553 222223
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+..++++++|++..+.-+..+ ..+...+...... ...|+++++||+|+...
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc
Confidence 45667899999999974322222 3444444444331 23899999999999864
No 142
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.63 E-value=7.7e-15 Score=100.50 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+++++|.+|+|||||++.++....... ..+... ......... .+ ..+.+|||||..... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~--~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIE--DFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchh--heEEEEEEE-CCEEEEEEEEECCCccccc-----------chH
Confidence 5899999999999999999887653222 111111 111122322 33 357899999965432 122
Q ss_pred HhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++.+|++++|++.++.-+-. ...+++.+.+... ....|+++|.||+|+...
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence 23566789999999998443322 2345555555422 123789999999998653
No 143
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.63 E-value=2.5e-14 Score=96.90 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=72.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhcc
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAK 101 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (173)
|+++|++|+|||||+|.|.+.... .... .|.......... .+..+.+|||||... +......++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~---~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTI---PTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCcc---CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 789999999999999999987642 2211 222233333444 567899999999642 233344567
Q ss_pred CCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 102 DGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 102 ~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
..+|++++|+|+++. ... .....++.+.... ....|+++|+||+|+...
T Consensus 66 ~~~d~ii~v~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 66 RGVNAIVYVVDAADR-TAL-EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred hcCCEEEEEEECCCH-HHH-HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 788999999999732 211 1222233333221 123689999999998765
No 144
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.63 E-value=1.4e-14 Score=103.95 Aligned_cols=113 Identities=20% Similarity=0.119 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|.+|+|||||++.++..... .. ..|.......... ....+.+|||||.... ......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~-----------~~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-DT----VSTVGGAFYLKQW-GPYNISIWDTAGREQF-----------HGLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CC----CCccceEEEEEEe-eEEEEEEEeCCCcccc-----------hhhHHH
Confidence 37899999999999999999987642 21 1233222233333 4567899999997542 122234
Q ss_pred ccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+++.++++|+|+|++++-+... ..++..+.+.... ..|+++|.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 5778999999999985443333 2333334433222 268999999999875
No 145
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=1.4e-14 Score=101.36 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+|+++|.+|+|||||+++++..... ......+.+............+..+.+|||||.. ++...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcH-----------hHHHHHH
Confidence 468999999999999999999876532 2211111111111111101134679999999953 2233334
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+++.++++++|+|+++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~ 124 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNA 124 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcccc
Confidence 56778999999999984322111 2233333332221 23799999999998643
No 146
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.1e-14 Score=95.59 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|++||..|+|||.|+..++..-.++......+.....+-..+.. ....+++|||+| .++++++..+
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g-ekiklqiwdtag-----------qerfrsitqs 75 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG-EKIKLQIWDTAG-----------QERFRSITQS 75 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC-eEEEEEEeeccc-----------hHHHHHHHHH
Confidence 6899999999999999999987663333222333444444444433 446899999999 4478888889
Q ss_pred ccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+++.+|+++++.|++-..+-. ..+|+.+|.+-..++ .-.++|.||.|+.+.+
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADRR 128 (213)
T ss_pred HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhhh
Confidence 999999999999997222222 368888888875554 6678999999988753
No 147
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=8.7e-15 Score=101.68 Aligned_cols=114 Identities=23% Similarity=0.147 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEE-EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+++++|.+|+|||||++.+.... |..... +|...... .... ++ ..+.+|||+|.... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~~~~~---pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FPSEYV---PTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCCC---CceeeeeEEEEEE-CCEEEEEEEEECCCccch-----------hhh
Confidence 579999999999999999998765 322221 22221111 2233 34 46789999997642 122
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|++.+++-+.... .+++.+.... ...|+++|.||+|+...
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhC
Confidence 23467789999999999855443332 3555555432 23799999999997643
No 148
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.62 E-value=1.2e-15 Score=99.32 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=68.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcc--ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+|+|+.|+|||||+++|++..... ........+.......... ....+.++|++|.........
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~----------- 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ----------- 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH-----------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc-----------
Confidence 68999999999999999999877431 1111122223222222222 233588999999754221111
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
.....+|++++|+|.++.-+.+. ..+++++...-......|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11335699999999984332222 234555555543233489999999998
No 149
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.62 E-value=2.3e-14 Score=98.00 Aligned_cols=118 Identities=16% Similarity=0.055 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|++|+|||||+++++..... ....+.............. ....+.+|||||.... ......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDG-EDVQLNILDTAGQEDY-----------AAIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECC-EEEEEEEEECCChhhh-----------hHHHHH
Confidence 37999999999999999999976532 2211111111111111111 2346899999996532 223334
Q ss_pred ccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
++..+++++++++..+.-+-. ...++..+..... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 667789999999987322111 1234344443311 23379999999999876
No 150
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.62 E-value=1.9e-14 Score=103.39 Aligned_cols=116 Identities=16% Similarity=0.021 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|.+|+|||||++.+++... .....+...........+.. ....+.+|||+|... +......
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~-~~v~L~iwDt~G~e~-----------~~~l~~~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDK-RRIELNMWDTSGSSY-----------YDNVRPL 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECC-EEEEEEEEeCCCcHH-----------HHHHhHH
Confidence 5799999999999999999987663 33322221111111111211 234788999999543 2233335
Q ss_pred ccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+++.+|++++|+|.++.-+-+. ..|...+.... ...|++||.||+|+..
T Consensus 69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~ 119 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRT 119 (222)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECccccc
Confidence 7889999999999985433222 23333333322 2379999999999865
No 151
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=1.3e-14 Score=101.45 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE--EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+++++|.+|+|||||++.+++... ..... .|..... ..+.. ++ ..+.+|||+|... +..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~---~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYI---QTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCC---CccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHH
Confidence 3789999999999999999987653 22221 2222111 22333 33 4689999999653 233
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
....+++.++++++|+|.+++.+..+ ..+++.+....+. ..| ++|.||+|+..
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLFA 118 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhccc
Confidence 33457889999999999985433332 3455555544222 245 68899999863
No 152
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.62 E-value=3.8e-14 Score=102.70 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=58.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+++++|++|+|||||+|+|++..... ......|.........+ .+..+.++||||+.+..........++ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 68999999999999999999876321 12233343343344445 778899999999876432222222222 245
Q ss_pred cCCceEEEEEeecC
Q 043441 101 KDGIHAVLVGFSVR 114 (173)
Q Consensus 101 ~~~~~~ii~v~~~~ 114 (173)
++.+|++++|+|++
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 67889999999986
No 153
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=3.8e-14 Score=96.99 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=74.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHHHHHHHH
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGMEIVKCIG 98 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~---~~~~~~~~~~~~ 98 (173)
|+++|.+|+|||||+|.|++...........+.+..... .. ....+.++||||+....... +.....+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 789999999999999999954322222222233333322 22 23489999999987653321 11222122222
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....++.++++++............++++... ..|+++++||+|++..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKK 125 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCCh
Confidence 223456788889988755555555666666543 2689999999999754
No 154
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.62 E-value=1.6e-14 Score=100.34 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=77.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+++++|.+|+|||+|+..++... |.....+.............. ....+.+|||+|.... ......
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~Ti~~~~~~~~~~~~-~~v~l~i~Dt~G~~~~-----------~~~~~~ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVSVDG-NTVNLGLWDTAGQEDY-----------NRLRPL 68 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCCcceeeeEEEEEECC-EEEEEEEEECCCCccc-----------cccchh
Confidence 479999999999999999999766 333222221111111112211 2357899999997643 222234
Q ss_pred ccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+++.++++|+|+|.+++-+-+. ..|++.+.... . ..|+++|.||+|+.+.
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~ 120 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRDD 120 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhccC
Confidence 6789999999999986655544 35666665542 2 3799999999998653
No 155
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.61 E-value=1.7e-14 Score=102.84 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------------------CCCCccceeeEEEEEEeeCCceE
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV 71 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (173)
+|+++|.+|+|||||+++|+........ -...+.|.........+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999764321110 00134455555555555 77789
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 72 NVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 72 ~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.++||||+.+ +...+......+|++++|+|+++............+.. .+ ..++++|+||+|+..
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LG---IRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC---CCcEEEEEEchhccc
Confidence 9999999642 22222234567899999999986655444443333322 22 145788999999875
Q ss_pred C
Q 043441 152 D 152 (173)
Q Consensus 152 ~ 152 (173)
.
T Consensus 145 ~ 145 (208)
T cd04166 145 Y 145 (208)
T ss_pred C
Confidence 3
No 156
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.61 E-value=1.7e-14 Score=99.44 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=73.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+++++|.+|+||||+++++.+... .....+....... ...... ....+.+|||||.... .....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYR--KQVEIDGRQCDLEILDTAGTEQF-----------TAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEE--EEEEECCEEEEEEEEeCCCcccc-----------hhhhH
Confidence 5799999999999999999987663 2222221111111 122221 2247789999997643 12222
Q ss_pred hccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.++..++++++|++.++.-+-+ ...+.+.+...... ...|++++.||.|+....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDR 122 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccC
Confidence 4456789999999998432222 23444555544322 237899999999987653
No 157
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=3e-14 Score=98.42 Aligned_cols=119 Identities=13% Similarity=-0.002 Sum_probs=72.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+..+|+++|.+|+|||||++++++.........+.. ........+.. .+ ..+.++|++|..... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~-~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI-KPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------L 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc-CcceEEEEEEE-CCeEEEEEEEecCCccccc-----------c
Confidence 457899999999999999999998763202221211 11111122333 33 467899999966431 1
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....++.++|++++|+|+++. .. .....+++.. +......|+++|+||+|+...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~-~s-~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDP-KS-FSYCAEVYKK-YFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCH-HH-HHHHHHHHHH-hccCCCCeEEEEEEccccccc
Confidence 122356789999999999743 11 1122232332 222224799999999998654
No 158
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.61 E-value=1.7e-14 Score=100.12 Aligned_cols=114 Identities=19% Similarity=0.084 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+++++|.+|+|||||+.+++.... .....+........ .... .+ ..+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~--~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA--NVMV-DGKPVNLGLWDTAGQED-----------YDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEE--EEEE-CCEEEEEEEEECCCchh-----------hhhhh
Confidence 4799999999999999999987553 22222211111111 1222 33 4688999999653 22223
Q ss_pred HhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
..++..+|++|+|++.+++-+... ..+++.+.... ...|+++|.||.|+..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~ 119 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhcc
Confidence 346778999999999985433332 23555555432 2379999999999854
No 159
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.61 E-value=1.8e-14 Score=106.39 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccc----------------cCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
+|+++|.+|+|||||+++|+....... .-...+.|.........+ ++..+.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~d--- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVD--- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHH---
Confidence 478999999999999999963211000 011235566666667777 788999999999764
Q ss_pred CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 85 GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+...+..+++.+|++++|+++.+.........++.+... ..|+++++||+|+...
T Consensus 77 --------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~a 131 (270)
T cd01886 77 --------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-----NVPRIAFVNKMDRTGA 131 (270)
T ss_pred --------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 222233456677999999999877776666666555442 2689999999998764
No 160
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-14 Score=106.05 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=94.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc-HHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~-~~~~~~~~ 94 (173)
......++++|.+++|||||.|.++|...+... ....|+..+...+-..+...++++||||+....... ......+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 356788999999999999999999998874433 334455555555544477899999999999765432 22333333
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+........+|.+++++|+++.-.......++.+.+.. ..|-++|.||.|.+..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh----cCCceeeccchhcchh
Confidence 44445677889999999998644445566777776652 2788999999998864
No 161
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=1.9e-14 Score=99.95 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=85.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|..||||||+++.|...... ...+|.......+.+ .+..+.++|.+|-. .++..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-----~~~pT~g~~~~~i~~-~~~~~~~~d~gG~~-----------~~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-----ETIPTIGFNIEEIKY-KGYSLTIWDLGGQE-----------SFRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-----EEEEESSEEEEEEEE-TTEEEEEEEESSSG-----------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-----ccCcccccccceeee-CcEEEEEEeccccc-----------ccccc
Confidence 66789999999999999999999865421 134566666667777 88899999999954 34445
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+..++.+++++|||+|.++.-. -.+..+.+.+.+... ...|++|++||.|....
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~--l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPER--LQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGG--HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ceeeccccceeEEEEeccccee--ecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 5578889999999999984321 223344445544432 34799999999998765
No 162
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.60 E-value=3e-14 Score=117.97 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=82.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~--~~~~~~~~~ 96 (173)
..+|+++|.+|+||||++|+|+|.... . ....+.|.+........ .+..+.++||||..+...... ...+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-v-gn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-V-GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 368999999999999999999997752 2 23456666666666665 677899999999987543211 112222211
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
......+|++++|+|++ ...... .+...+.+. ..|+++++||+|+.+.
T Consensus 80 -~l~~~~aD~vI~VvDat-~ler~l-~l~~ql~e~-----giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 80 -YILSGDADLLINVVDAS-NLERNL-YLTLQLLEL-----GIPCIVALNMLDIAEK 127 (772)
T ss_pred -HHhccCCCEEEEEecCC-cchhhH-HHHHHHHHc-----CCCEEEEEEchhhhhc
Confidence 11245789999999998 443332 333333332 2799999999998754
No 163
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.60 E-value=3.1e-14 Score=103.91 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|..|+|||||++.+++... .....+........ .+.. .+ ..+.+|||+|.... ....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~pTi~d~~~k--~~~i-~~~~~~l~I~Dt~G~~~~-----------~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EEQYTPTIEDFHRK--LYSI-RGEVYQLDILDTSGNHPF-----------PAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCChhHhEEE--EEEE-CCEEEEEEEEECCCChhh-----------hHHH
Confidence 3799999999999999999987653 22222211111122 2222 33 46789999996542 1111
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHc-------ccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFG-------KKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-------~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++|+|+++++.-+-+. ..+++.+.+... .....|+++|.||+|+...
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~ 128 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP 128 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc
Confidence 234567899999999984432222 344455544311 1123799999999998753
No 164
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.60 E-value=2.9e-14 Score=98.64 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|++|+|||||++.+++.... ....+...... ...... .+. .+.+|||||...... ...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHY--AVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeee--EEEEEE-CCEEEEEEEEeCCCcccccc-----------ccc
Confidence 7999999999999999999876632 22122111111 112222 333 467999999765321 112
Q ss_pred hccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++++++++++|++..+.-+.+. ..+++.+... . ...|+++|.||+|+.+.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLRDD 119 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhhcC
Confidence 45778899999999984433322 2455555543 2 23799999999998643
No 165
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.60 E-value=1.8e-14 Score=100.16 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCc------cccCC-------CCccceeeEEEEEEe----eCCceEEEEeCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAF------KSRAS-------SSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~------~~~~~-------~~~~t~~~~~~~~~~----~~~~~~~v~DtpG~~~~ 82 (173)
++|+++|.+|+|||||++++++.... ..... ..+.+.........+ ..+..+.+|||||+.+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 36899999999999999999874211 00000 011222222111211 13456889999998642
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
......++..+|++++|+|+++..+..+...+..+. .. ..|+++|+||+|+...
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~--~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---EN--NLEIIPVINKIDLPSA 134 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---Hc--CCCEEEEEECCCCCcC
Confidence 222334566789999999998655544433332222 12 2689999999998643
No 166
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.4e-14 Score=100.27 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=90.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++++|.+|+|||-|+..++.........+..+.....+...+.. +-.+.++|||+|.. +++.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQE-----------RyrAi 79 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQE-----------RYRAI 79 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchh-----------hhccc
Confidence 4457899999999999999999988775444444445544444444433 44578999999944 55555
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...+|+++.+.++|.|++.+.+-+ ...|+++|++..... ..+++|.||+|+..-+
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lr 135 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLR 135 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhcc
Confidence 667999999999999998555544 367777787775443 7999999999998743
No 167
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.59 E-value=2.2e-14 Score=106.26 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCC------CCccceeeEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH-
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEFV- 89 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~v~DtpG~~~~~~~~~~~- 89 (173)
.+++|+|.+|+|||||||+|++......... ....+........... .+ .++.|+||||+.+.-.+...+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 6899999999999999999999775444311 1112222222222221 22 378999999999764433222
Q ss_pred ------HHHHHHHHHh---------ccCCceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 90 ------GMEIVKCIGL---------AKDGIHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 90 ------~~~~~~~~~~---------~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++...+.. .-.++|++||+++.+ ..+.+.+...|+.|.+. .+++-|+.|+|.+..
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccCH
Confidence 2222222221 223569999999985 36778888887777665 789999999999976
No 168
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.59 E-value=2.6e-14 Score=99.01 Aligned_cols=114 Identities=20% Similarity=0.147 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+++++|++|+|||||++.+++.. |.....+...... ...... ++ ..+.+|||||.... ....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-YPTEYVPTAFDNF--SVVVLV-DGKPVRLQLCDTAGQDEF-----------DKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeee--eEEEEE-CCEEEEEEEEECCCChhh-----------cccc
Confidence 368999999999999999998755 3233222211111 112223 33 46789999997532 2222
Q ss_pred HhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
..++..+|++++|+|.+++-+... ..++..+..... ..|++++.||.|+..
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 118 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRT 118 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhcc
Confidence 346788999999999985433332 245555554321 278999999999864
No 169
>PLN00023 GTP-binding protein; Provisional
Probab=99.59 E-value=4.9e-14 Score=105.19 Aligned_cols=129 Identities=18% Similarity=0.128 Sum_probs=81.8
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe------------eCCceEEEEeCCCCC
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL------------KDGQVVNVIDTPGLF 80 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~v~DtpG~~ 80 (173)
...+....+|+++|..|+|||||++.+++...........+.+.......+.. .....+.||||+|..
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 44566778999999999999999999997653222111222222212111110 012458999999955
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc----------cccceEEEEEeCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK----------KVFDYMIVVFTGGDE 149 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~----------~~~~~~~iv~tk~D~ 149 (173)
++..+...+++.++++|+|+|++++-+.+. ..|++.+...... ....+++||.||+|+
T Consensus 95 -----------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 95 -----------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred -----------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 344444567889999999999985443332 4566666654210 012689999999998
Q ss_pred CCC
Q 043441 150 LED 152 (173)
Q Consensus 150 ~~~ 152 (173)
...
T Consensus 164 ~~~ 166 (334)
T PLN00023 164 APK 166 (334)
T ss_pred ccc
Confidence 653
No 170
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.59 E-value=3.9e-14 Score=102.81 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccc--c--------------CCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKS--R--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
+|+++|..|+|||||+++|+....... + -...+.+.........+ ++..+.++||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 478999999999999999975321100 0 01122334444555566 7789999999998753
Q ss_pred CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 85 GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+ ...+++.+|++++|+++.+........+.+.+.+. ..|+++++||+|+...
T Consensus 78 -----~~~----~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~~a 131 (237)
T cd04168 78 -----IAE----VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-----NIPTIIFVNKIDRAGA 131 (237)
T ss_pred -----HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccccCC
Confidence 112 22345567999999999877666555555555432 2689999999998865
No 171
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.59 E-value=1.5e-14 Score=99.62 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=70.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccc-e--------------------------------------------
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVT-S-------------------------------------------- 56 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t-~-------------------------------------------- 56 (173)
|+++|..++|||||||+|+|......+..+.... +
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 6899999999999999999987655443221000 0
Q ss_pred --------eeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHH
Q 043441 57 --------TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSW 128 (173)
Q Consensus 57 --------~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l 128 (173)
..............+.++||||+.+...... ..+..+.+.+|++|+|+++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0001111111234689999999987433322 3333455788999999999866666655544433
Q ss_pred HHHHcccccceEEEEEeCC
Q 043441 129 QTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 129 ~~~~~~~~~~~~~iv~tk~ 147 (173)
.+.. ...+++|+||.
T Consensus 154 ~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPD----KSRTIFVLNKA 168 (168)
T ss_dssp HTTT----CSSEEEEEE-G
T ss_pred hcCC----CCeEEEEEcCC
Confidence 3321 24599999984
No 172
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.8e-14 Score=113.88 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=92.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~--~~~~~~~~~~~~ 96 (173)
..+++++|++++||||++|+|+|.++ .-...++.|.+.+...... ++..+.++|.||..+-.. ..++..+++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-- 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFL-- 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence 35699999999999999999999886 3445778899998888888 888899999999996543 3343333333
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
...++|+++-|+|++ ++..+...+++.+.-- .|+++++|.+|+.+..+
T Consensus 78 ---l~~~~D~ivnVvDAt-nLeRnLyltlQLlE~g------~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 78 ---LEGKPDLIVNVVDAT-NLERNLYLTLQLLELG------IPMILALNMIDEAKKRG 125 (653)
T ss_pred ---hcCCCCEEEEEcccc-hHHHHHHHHHHHHHcC------CCeEEEeccHhhHHhcC
Confidence 256789999999998 6666655554443332 78999999999987644
No 173
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.58 E-value=3.3e-14 Score=100.63 Aligned_cols=115 Identities=22% Similarity=0.249 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|.+|+|||||++.+++... .....+...... ...... .+ ..+.+|||||.... .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~--~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF-EPKYRRTVEEMH--RKEYEV-GGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchhhhe--eEEEEE-CCEEEEEEEEECCCchhh-----------hHHHH
Confidence 589999999999999999988663 222211111111 122222 33 47889999996642 11222
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.++..+|++++|+|+++..+... ..++..+.+.... ...|+++|+||+|+..
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 35678899999999984333222 3444444444322 2379999999999875
No 174
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.58 E-value=4.4e-14 Score=97.82 Aligned_cols=116 Identities=17% Similarity=0.106 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
++++++|++|+|||||++.+.+... .....+...... ....... ....+.+|||||.... .....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY--VADIEVDGKQVELALWDTAGQEDY-----------DRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccccce--EEEEEECCEEEEEEEEeCCCchhh-----------hhccc
Confidence 6899999999999999999998653 222222111111 1122221 2236789999996532 11122
Q ss_pred hccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+..+|++++|+++.+.-+.+. ..++..+.... ...|+++|.||+|+...
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND 120 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC
Confidence 35678899999999974422222 23444444332 23799999999997643
No 175
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=5.9e-14 Score=101.00 Aligned_cols=119 Identities=18% Similarity=0.039 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcc-ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
.+|+++|.+|+|||||++.+++.........+... ........... ....+.+|||||... ....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~------~~~~------- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM------WTED------- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch------HHHh-------
Confidence 37999999999999999999765532122222211 22222222222 335789999999751 1111
Q ss_pred hccC-CceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 99 LAKD-GIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~-~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.++. .+|++++|+++++.-+... ..+++.+.+... ....|+++|.||+|+....
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~ 122 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSR 122 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccc
Confidence 2333 7899999999985433221 344454544321 1237999999999987553
No 176
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.58 E-value=8.6e-14 Score=102.65 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=77.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------------CCCccceeeEEEEEEeeCCceEEEEeCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRA--------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG 78 (173)
.++|+++|..|+|||||+++|+......... ...+.+.........+ ++..+.+|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 4789999999999999999997532110100 0112333444455666 788999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..+. ..+.. ..++.+|++++|+++++........+++.... ...|+++++||+|+...+
T Consensus 81 ~~df-------~~~~~----~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 81 HEDF-------SEDTY----RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-----RGIPIITFINKLDREGRD 139 (267)
T ss_pred chHH-------HHHHH----HHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-----cCCCEEEEEECCccCCCC
Confidence 7642 11222 33456799999999986665554444433322 126899999999987653
No 177
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=3.9e-14 Score=94.12 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=89.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC-CccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.....+|+++|.+|+|||+|+-.++... |+..... .+..-..+...+.. +.-.+.+|||+|.. +++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqE-----------rFR 74 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQE-----------RFR 74 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchH-----------hhh
Confidence 3455899999999999999999988766 4333322 34455555555544 45588999999944 677
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
....++|+++.++|+|.|.+.+-+-.. ..|++++..- ......-.++|.||.|+-.++..+.++
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y-stn~diikmlVgNKiDkes~R~V~reE 139 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLY-STNPDIIKMLVGNKIDKESERVVDREE 139 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhh-cCCccHhHhhhcccccchhcccccHHH
Confidence 777789999999999999984333221 3555555443 222224567899999987554445554
No 178
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=2e-14 Score=96.36 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=65.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|.+|+|||||+|++++... . ...|. ...+ .. .+|||||... . ..+..+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~---~~~t~-----~~~~-~~---~~iDt~G~~~---~----~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---L---YKKTQ-----AVEY-ND---GAIDTPGEYV---E----NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---c---cccce-----eEEE-cC---eeecCchhhh---h----hHHHHHHHHHH
Confidence 799999999999999999998653 1 11122 1222 22 5899999742 1 11222222235
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
++++|++++|+|+++..+.....++ +.+. .|+++|+||+|+..
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~----~~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFA----SIFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHH----Hhcc----CCeEEEEEeeccCC
Confidence 7899999999999866554433322 2221 48999999999864
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.57 E-value=1.3e-13 Score=111.32 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=81.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..+.++|+++|..++|||||+++|.+....... ..+.|.........+..+..+.+|||||...+. .
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~ 150 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------S 150 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcchh-----------h
Confidence 357789999999999999999999886643222 233454444455555233489999999976531 1
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....+..+|++++|+++.+.........++.... ...|+++++||+|+...
T Consensus 151 ~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 151 MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-----ANVPIIVAINKIDKPEA 202 (587)
T ss_pred HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcccccC
Confidence 22245667899999999986655554444433322 12789999999998754
No 180
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=9.3e-14 Score=96.71 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|.+|+|||||++.+++... .....+....... ..... .+ ..+.++||||..+ +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~--~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS--KIIRY-KGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE--EEEEE-CCEEEEEEEEECCChHh-----------hHHHH
Confidence 5899999999999999999997653 2211111111111 22222 33 3568999999653 22222
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+++++++++.++.-+.+. ..+.+.+.+.... ...|++++.||+|+...
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc
Confidence 345667899999999984322221 2333333333221 23689999999998743
No 181
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.57 E-value=2.5e-14 Score=97.81 Aligned_cols=122 Identities=20% Similarity=0.196 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-ccceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|..|+|||||++.+.+... .....+. +.. ........ .....+.+||++|.... .....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGID--SYSKEVSIDGKPVNLEIWDTSGQERF-----------DSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEE--EEEEEEEETTEEEEEEEEEETTSGGG-----------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccc--cccccccccccccccccccccccccc-----------ccccc
Confidence 589999999999999999987663 2222221 122 22222222 02236899999995431 11222
Q ss_pred hccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHH
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLE 158 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~ 158 (173)
..+..++++++|++.+++-+-+ -..+++.+....+. ..|++++.||.|+......+.+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~~~v~~~ 125 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDEREVSVE 125 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGGSSSCHH
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccceeeeccccccccccchhh
Confidence 4577889999999998432222 14555555555442 2799999999998864434433
No 182
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.56 E-value=9.1e-14 Score=102.80 Aligned_cols=115 Identities=21% Similarity=0.201 Sum_probs=74.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcc--ccCC--------------CCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFK--SRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
+|+++|.+|+|||||+++|++..... .+.. ....+.........+ ++..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 47999999999999999997532110 0100 012223333344555 677899999999753
Q ss_pred CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 85 GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+......++..+|++++|+++++.........++.+... ..|.++++||+|+...
T Consensus 77 --------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 --------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-----GIPRIIFINKMDRERA 131 (268)
T ss_pred --------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCccCCC
Confidence 122222344567999999999866555544554444332 2689999999998865
No 183
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.56 E-value=7.1e-14 Score=98.46 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC---Ccccc--CCCCccceeeEEEEEEee-------------CCceEEEEeCCCCCCC
Q 043441 21 TVVFVGRTGNGKSATGNSILGRR---AFKSR--ASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFDF 82 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~-------------~~~~~~v~DtpG~~~~ 82 (173)
+|+++|.+++|||||+++|++.. .+... ....+.|.........+. .+..+.+|||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 68999999999999999998731 11111 011123333333333331 256899999999641
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.+.+......+|++++|+|+.+.........+... ... ..|+++++||+|+...
T Consensus 81 ----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 ----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EIL----CKKLIVVLNKIDLIPE 135 (192)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHc----CCCEEEEEECcccCCH
Confidence 222222334567899999999865555443333322 221 2689999999999754
No 184
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=6e-14 Score=102.84 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
..+.+||-++||||||+|+|..... .-......|.......+.+.+...+.|.|.||+.+..+..+-++.++.+-+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3488999999999999999998774 22233334444445555554555699999999999999999899888866554
Q ss_pred ccCCceEEEEEeecCCCC--CHHH-H-HHHHHHHHHHcc-cccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRF--PQEE-E-AALHSWQTLFGK-KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~--~~~~-~-~~~~~l~~~~~~-~~~~~~~iv~tk~D~~~~ 152 (173)
++.++||+|.+... ++.+ . .+..++. .+.. -...|.+||.||+|..+.
T Consensus 275 ----~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe-~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 275 ----CKGLLFVVDLSGKQLRNPWQQLQLLIEELE-LYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred ----hceEEEEEECCCcccCCHHHHHHHHHHHHH-HHhhhhccCceEEEEeccCchhH
Confidence 48999999998441 3332 1 2222222 2222 244789999999999754
No 185
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.56 E-value=5.1e-14 Score=99.73 Aligned_cols=109 Identities=17% Similarity=0.061 Sum_probs=71.5
Q ss_pred EcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEE--EEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhcc
Q 043441 25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAK 101 (173)
Q Consensus 25 vG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (173)
+|..|+|||||+++++... |..... .|...... .+... ....+.+|||||... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~---~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYV---ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCC---CceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 6999999999999998654 322221 23222221 12220 345889999999653 333444578
Q ss_pred CCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 102 DGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 102 ~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
++++++++|+|++++.+... ..|++.+.+... ..|+++|.||+|+..
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~ 113 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKD 113 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 89999999999985544332 356666665422 379999999999753
No 186
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.5e-13 Score=93.52 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=89.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++++|.+|+|||.|+...+.+.....-....+.....+..++.- +..++++|||.|.. .+++.
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~-k~IKlqiwDtaGqe-----------~frsv 71 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG-KQIKLQIWDTAGQE-----------SFRSV 71 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC-ceEEEEEEecCCcH-----------HHHHH
Confidence 4557899999999999999999998774222222333333334444444 55689999999955 57777
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...+|+++-+.|+|+|.+.+-+-+ ...|+..++.....+ -.++++.||+|+-..+
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccc
Confidence 788999999999999998554443 357877777774333 5688999999987544
No 187
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=4.8e-14 Score=109.95 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=82.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cCCCCccceeeEEEEEEeeCCceEEEEeCCCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~ 80 (173)
+..+..+++++|.+++|||||+++|++...... .-...+.|.......... ++..+.++||||+.
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~ 86 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA 86 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH
Confidence 356668999999999999999999987421100 001134455444444444 66788999999954
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EEEEEeCCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MIVVFTGGDELED 152 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 152 (173)
++...+......+|++++|+|+...+.......+..+... + .| +++++||+|+...
T Consensus 87 -----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g----~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 87 -----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-G----VPNIVVFLNKEDQVDD 143 (409)
T ss_pred -----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEEccCCCCH
Confidence 2333333445678999999999877776666666655543 1 44 7789999999854
No 188
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.56 E-value=3.6e-14 Score=97.02 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=69.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
++|+++|.+|+|||||+|.|.|..... ..+.. ..+ ... .+|||||..... ..+...+. .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~-----v~~-~~~--~~iDtpG~~~~~---~~~~~~~~----~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQA-----VEF-NDK--GDIDTPGEYFSH---PRWYHALI----T 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccceE-----EEE-CCC--CcccCCccccCC---HHHHHHHH----H
Confidence 379999999999999999998854211 11111 122 222 269999986432 12223332 3
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
.+..+|++++|+|+++..+... . ++.+. .. ..|+++++||+|+...+.....++++.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~-~---~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~~ 117 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLP-A---GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLLLE 117 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccC-H---HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHHHH
Confidence 3568899999999984432221 1 22222 11 267999999999865533333444433
No 189
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.56 E-value=2.4e-13 Score=91.74 Aligned_cols=117 Identities=22% Similarity=0.192 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+|+++|.+|+|||||++.+++.. +..... ...+.......... .+ ..+.+|||||..... ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~------- 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR----AIR------- 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECCCcccch----HHH-------
Confidence 689999999999999999999877 333322 22333333332334 45 578899999955421 111
Q ss_pred HhccCCceEEEEEeecCCC-CCH--HHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSR-FPQ--EEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
......++.+++++|.... .+. ....+...+...... ..|+++++||+|+...
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA 123 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence 1223344556666666422 111 112333444443322 3789999999999864
No 190
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.6e-13 Score=101.57 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=85.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhcc
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAK 101 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (173)
|.+||-++||||||++.+...+. .....+-.|.....-.+....+..+++.|.||+.+..+.-.-++.++.+-+.++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt- 238 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT- 238 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-
Confidence 78999999999999999998775 233333334333333333336778999999999999888888888888766655
Q ss_pred CCceEEEEEeecCCCCC----HHHH-HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 102 DGIHAVLVGFSVRSRFP----QEEE-AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 102 ~~~~~ii~v~~~~~~~~----~~~~-~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+++.|+|++ ... .++. ...+++...-..-..++.+||+||+|....
T Consensus 239 ---~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 239 ---RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred ---heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 7899999997 333 2222 222333332122244799999999995543
No 191
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.54 E-value=2e-13 Score=96.98 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeEEEEEEee--------------------------------C
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLK--------------------------------D 67 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------------~ 67 (173)
+++++|.+|+|||||+.+|.+... ...+....+.+.........+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999987521 1111111222222222111110 1
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-CCHHHHHHHHHHHHHHcccccceEEEEEeC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-FPQEEEAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
...+.+|||||.. .+...+......+|++++|+++.+. ........+..+... + ..++++|+||
T Consensus 82 ~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~---~~~iiivvNK 146 (203)
T cd01888 82 VRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G---LKHIIIVQNK 146 (203)
T ss_pred ccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C---CCcEEEEEEc
Confidence 2678999999942 3444444556678999999999843 233333444434221 1 1578999999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
+|+...
T Consensus 147 ~Dl~~~ 152 (203)
T cd01888 147 IDLVKE 152 (203)
T ss_pred hhccCH
Confidence 999753
No 192
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.54 E-value=2e-13 Score=112.91 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=83.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..+.++|+++|..++|||||+++|.+...... ...+.|.......+.+ .+..+.+|||||+..+. .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~ 352 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------A 352 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------h
Confidence 56889999999999999999999987654322 2234455555555666 67889999999987531 1
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....+..+|++++|+++.+.........+..+.. ...|+++++||+|+...
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-----AGVPIIVAINKIDKPGA 404 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-----cCCcEEEEEECcccccc
Confidence 11234566799999999986665555555444332 22789999999999754
No 193
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.54 E-value=1.7e-13 Score=91.24 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+...+|+++|..||||||+++.+.+... ....+|...+.....+ ++-.+.+||.-|.. .+++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----------~lr~ 75 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----------TLRS 75 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCcc-----------hhHH
Confidence 44578999999999999999999999763 3344566777777777 88899999998844 5778
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+++.++...|++|+|+|.+++.... +....+.+++... ...+++++.||.|....
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~--e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQ--ECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHH--HHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 8889999999999999998654443 3334444444432 33589999999998843
No 194
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=2.9e-14 Score=109.93 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=97.3
Q ss_pred ccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHH
Q 043441 11 ELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~ 90 (173)
..++..+...+++|+|.+++|||||+|.++... ....+++.|+..-+......+...++++||||+.+.-.....+.
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad---vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD---DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhcccccccc---cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 346677889999999999999999999998866 35566677766655444432667999999999998533333222
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHH---HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQE---EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
++..+.. ..+-.-+++|+.|.+..+.-. +..+++.|+.+|.+ .++++|+||+|.+....
T Consensus 237 -EmqsITA-LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 237 -EMQIITA-LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPED 298 (620)
T ss_pred -HHHHHHH-HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccc
Confidence 3333222 222224688899998666543 46778888888876 78999999999997643
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.54 E-value=1.3e-13 Score=108.18 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=81.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------c---------------CCCCccceeeEEEEEEee
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLK 66 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~ 66 (173)
..+..+++++|..++|||||++.|+....... + -...+.|..........
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 45668899999999999999999984322110 0 01345666666666666
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCC--CCCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRS--RFPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
++..+.+|||||+.+. ...+. .....+|++++|+|+++ .+.......+..+.. ++ ..++++++
T Consensus 82 ~~~~i~liDtpG~~~~-------~~~~~----~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~---~~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDF-------VKNMI----TGASQADAAVLVVAADDAGGVMPQTREHVFLART-LG---INQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccc-------hhhHh----hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cC---CCeEEEEE
Confidence 7789999999996532 11222 33567899999999986 444444444443332 22 14689999
Q ss_pred eCCCCCCC
Q 043441 145 TGGDELED 152 (173)
Q Consensus 145 tk~D~~~~ 152 (173)
||+|+...
T Consensus 147 NK~Dl~~~ 154 (425)
T PRK12317 147 NKMDAVNY 154 (425)
T ss_pred Eccccccc
Confidence 99998753
No 196
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=2.5e-13 Score=97.28 Aligned_cols=119 Identities=17% Similarity=0.044 Sum_probs=71.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEE--EEe-eCCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVL-KDGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
......+++++|++|+|||||++.++.... ..... .|....... ... .....+.+|||+|....
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~-~~~~~---~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------- 71 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEF-EKKYI---PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------- 71 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCC-CCCCC---CccceEEEEEEEEECCeEEEEEEEECCCchhh---------
Confidence 455668999999999999999975543332 12211 122222211 111 13357899999995431
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
......++..++++++|++.++..+... ..++..+.... . ..|++++.||+|+..
T Consensus 72 --~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 72 --GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E--NIPIVLVGNKVDVKD 127 (215)
T ss_pred --hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccCcc
Confidence 1122245667799999999985444332 34444444432 2 268899999999754
No 197
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.53 E-value=1.6e-13 Score=91.71 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=69.3
Q ss_pred EEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCC
Q 043441 24 FVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDG 103 (173)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (173)
++|++|+|||||+|++.+.........+.............. .+..+.++|+||..... .......+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~-----------~~~~~~~~~ 68 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG-KKVKLQIWDTAGQERFR-----------SLRRLYYRG 68 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC-EEEEEEEEecCChHHHH-----------hHHHHHhcC
Confidence 589999999999999998765222222221111111111111 25678999999976421 111345667
Q ss_pred ceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 104 IHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 104 ~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
++++++|+++.+.......................|+++++||+|+....
T Consensus 69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 89999999998433333222210111111122348999999999988664
No 198
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.53 E-value=3.7e-15 Score=102.91 Aligned_cols=122 Identities=12% Similarity=0.179 Sum_probs=71.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
...++|+|++|||||+|+..|.......+-.+.. ... ........+..+.++|+||...-. . ++...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e---~n~-~~~~~~~~~~~~~lvD~PGH~rlr---~----~~~~~~- 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME---NNI-AYNVNNSKGKKLRLVDIPGHPRLR---S----KLLDEL- 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SS---EEE-ECCGSSTCGTCECEEEETT-HCCC---H----HHHHHH-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc---CCc-eEEeecCCCCEEEEEECCCcHHHH---H----HHHHhh-
Confidence 4789999999999999999998764322221110 000 011111145689999999987532 1 222221
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc----ccceEEEEEeCCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK----VFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~iv~tk~D~~~~~ 153 (173)
.+...+.+||||+|.+ .+..+-....+.|.+++... ...|++|+.||.|+....
T Consensus 71 ~~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 71 KYLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hchhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 1344578999999997 55555566677777665442 346999999999998753
No 199
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.52 E-value=3.6e-13 Score=110.54 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=80.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
..+.++|+++|..++|||||+++|.+....... ..+.|.....+...+. .+..+.+|||||+..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------- 307 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------- 307 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHHH-----------
Confidence 457789999999999999999999876543221 1233333233333321 247899999999642
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.......+..+|++++|+++.+.........++.+.. ...|+++++||+|+...
T Consensus 308 F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 308 FSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKANA 362 (742)
T ss_pred HHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCcccc
Confidence 33333345667899999999986665555555444432 22789999999998764
No 200
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.4e-13 Score=89.70 Aligned_cols=137 Identities=16% Similarity=0.114 Sum_probs=94.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
-.+++++|+.|.|||.|+..+.....-+......+.....+...+-. +...+++|||+| .+++++...
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAG-----------QErFRSVtR 76 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAG-----------QERFRSVTR 76 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeeccc-----------HHHHHHHHH
Confidence 36899999999999999999887663222222233333333333333 456899999999 447888888
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcccCCCCc
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGRECPKPL 169 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l 169 (173)
.+|+++-+.++|.|++++-+-+. ..|+..++.+.+.. .-++++.||.|+-..+..+..+.-.-+.+++|
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEAs~FaqEnel 146 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENEL 146 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHHHhhhcccce
Confidence 99999999999999985544442 46666666654433 56778889999887766666665555444444
No 201
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.52 E-value=5.9e-13 Score=95.44 Aligned_cols=120 Identities=16% Similarity=0.087 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+++++|..|+|||||++++.+.... ....+...+...............+.+|||+|+. ++......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-----------~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-----------EYRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc-ccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH-----------HHHHHHHH
Confidence 79999999999999999999987742 2222222222222211111013568999999955 45566667
Q ss_pred ccCCceEEEEEeecCCCC--CHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRF--PQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
++.++++++++++....- ......+.+.+....+. ..+++++.||+|+....
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccch
Confidence 889999999999997412 22234555555555332 37999999999999774
No 202
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=2.1e-13 Score=89.45 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=82.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
...+++|.+|+|||+|+-.+.......+.....+.....+-..+.. ....+++|||+| .+.++.+...
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G-~~VkLqIwDtAG-----------qErFrtitst 76 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDING-DRVKLQIWDTAG-----------QERFRTITST 76 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCC-cEEEEEEeeccc-----------HHHHHHHHHH
Confidence 3568999999999999988876543112122222333333333332 445789999999 4467777788
Q ss_pred ccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+++++|++++|.|.++.-+-. -+.|++.++..... .|-++|.||.|..+-
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER 127 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc
Confidence 999999999999998544433 36777777776543 789999999998864
No 203
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.51 E-value=2.6e-13 Score=101.47 Aligned_cols=130 Identities=23% Similarity=0.302 Sum_probs=86.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc----CCC--CccceeeEEEEEEee-CC--ceEEEEeCCCCCCCCCCcH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE 87 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~~~v~DtpG~~~~~~~~~ 87 (173)
.-..+++++|++|.|||||+|.|++....... ... ...+........... ++ .++.|+|||||++.-.+..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 45678999999999999999999987432221 111 123333443333332 22 3789999999998755432
Q ss_pred HH-------HHHHHHHHH----------hccCCceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCC
Q 043441 88 FV-------GMEIVKCIG----------LAKDGIHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDE 149 (173)
Q Consensus 88 ~~-------~~~~~~~~~----------~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~ 149 (173)
-| ..++..++. ..-.++|++||.+..+ ..++.-+..+|+.+.+. .+++-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence 22 222333321 1233579999998763 47777788887777775 789999999999
Q ss_pred CCC
Q 043441 150 LED 152 (173)
Q Consensus 150 ~~~ 152 (173)
+..
T Consensus 175 lT~ 177 (373)
T COG5019 175 LTD 177 (373)
T ss_pred CCH
Confidence 976
No 204
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.51 E-value=3.3e-13 Score=94.66 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=70.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+++++|++|+|||||++.+...... ....+ +....+ ..... .+ ..+.++||||.......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~----------- 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-EEYHP---TVFENYVTDCRV-DGKPVQLALWDTAGQEEYERL----------- 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCC---cccceEEEEEEE-CCEEEEEEEEECCCChhcccc-----------
Confidence 58999999999999999999854422 22111 211111 12222 22 35789999997543111
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
....+..+++++++++.++.-+... ..+++.+....+ ..|+++|.||+|+..
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~ 119 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQ 119 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhh
Confidence 0124567899999999974332222 245666655432 289999999999754
No 205
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.51 E-value=6.2e-14 Score=106.57 Aligned_cols=120 Identities=22% Similarity=0.183 Sum_probs=69.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccc-eeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+....|+|+|.+|+|||||||+|.|...-+.+..+.+.+ +......+..++..++++||.||........+.. .+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Y----l~ 108 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEY----LK 108 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHH----HH
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHH----HH
Confidence 456899999999999999999998865544444444332 1112223333366789999999998654333332 22
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDE 149 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~ 149 (173)
.. .+...|.+|+ +... +++.++....+.++.. ..++++|-||+|.
T Consensus 109 ~~--~~~~yD~fii-i~s~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 109 EV--KFYRYDFFII-ISSE-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDS 153 (376)
T ss_dssp HT--TGGG-SEEEE-EESS-S--HHHHHHHHHHHHT-----T-EEEEEE--HHH
T ss_pred Hc--cccccCEEEE-EeCC-CCchhhHHHHHHHHHc-----CCcEEEEEecccc
Confidence 22 2334576554 5555 8999998888888775 2779999999996
No 206
>PRK12735 elongation factor Tu; Reviewed
Probab=99.50 E-value=3.9e-13 Score=104.44 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=79.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCC------Ccc--------ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRR------AFK--------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~------~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~ 80 (173)
...+..+++++|..++|||||+++|++.. .+. ..-...+.|.......... ++..+.++||||+.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~ 86 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH
Confidence 34566899999999999999999998621 100 0011234555554444444 56789999999963
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EEEEEeCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MIVVFTGGDELE 151 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~ 151 (173)
++...+......+|++++|+++.+.........+..+... + .| +++++||+|+..
T Consensus 87 -----------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 -----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVD 142 (396)
T ss_pred -----------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEecCCcc
Confidence 3333444556678999999999865655555555444332 1 45 456899999974
No 207
>PRK09866 hypothetical protein; Provisional
Probab=99.50 E-value=8.9e-13 Score=105.44 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=54.4
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 69 QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 69 ~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
..++++||||+..+.. ..+.+.+.+ ...++|+|+||+|+...++..+...++.+++. +. ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence 4689999999986432 223434443 46678999999999866788888887777664 21 148999999999
Q ss_pred CCC
Q 043441 149 ELE 151 (173)
Q Consensus 149 ~~~ 151 (173)
..+
T Consensus 301 l~d 303 (741)
T PRK09866 301 QQD 303 (741)
T ss_pred CCC
Confidence 975
No 208
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.50 E-value=1.8e-13 Score=96.94 Aligned_cols=127 Identities=22% Similarity=0.222 Sum_probs=84.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCcccc-----CCCCccceeeEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSR-----ASSSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~-~~--~~~~v~DtpG~~~~~~~~~~~~ 90 (173)
..+|++||.+|.||||++|.|.......+. ..+...|+.......... ++ .++.++|||||.+.-.+ +..+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN-~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN-DNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc-cchh
Confidence 367999999999999999999875544432 123344555444333321 22 37899999999986332 2222
Q ss_pred HHHHHHHHh------------------ccCCceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 91 MEIVKCIGL------------------AKDGIHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 91 ~~~~~~~~~------------------~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+.+.+++.. .--++|+++|.++.+ ..+...+..+++.+.+. .+++-|+-|+|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeeccccc
Confidence 222222211 122468888888774 46777888998888887 77999999999996
Q ss_pred C
Q 043441 152 D 152 (173)
Q Consensus 152 ~ 152 (173)
-
T Consensus 199 l 199 (336)
T KOG1547|consen 199 L 199 (336)
T ss_pred H
Confidence 4
No 209
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.49 E-value=3.9e-13 Score=91.88 Aligned_cols=108 Identities=20% Similarity=0.157 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|.+|+|||||++.++... |.....+..... ...+.. ++ ..+.+|||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~-f~~~~~~~~~~~---~~~i~~-~~~~~~l~i~D~~g~~~~---------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS-YVQLESPEGGRF---KKEVLV-DGQSHLLLIRDEGGAPDA---------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC-CCCCCCCCccce---EEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence 68999999999999999877654 222222211111 122333 44 45889999997530
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
.+++.+|++++|+|.+++-+-.. ..+++.+..... ....|+++|.||.|+.
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 23456899999999986555444 456565654421 1236899999999975
No 210
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.49 E-value=4.7e-13 Score=96.07 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeEEEEEEee---------CCceEEEEeC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------DGQVVNVIDT 76 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~v~Dt 76 (173)
++|+++|..++|||||+.+|+......... ...+.|.........+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 478999999999999999997543211100 01123333322222331 1457889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
||..+. .......++.+|++++|+|+.+.........++..... . .|+++++||+|+.
T Consensus 81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 998753 22233456678999999999877766665555444332 2 6899999999986
No 211
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.49 E-value=9e-13 Score=108.91 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=84.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc---C-------------CCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
....++|+++|..++|||||+++|+........ . ...+.|.........+ ++..+.++||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence 456789999999999999999999742211100 0 0134556666666777 7889999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+.. .+ +...++.+|++++|+|+.+.........++.+... ..|+++++||+|+...
T Consensus 86 ~~~~-------~~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFT-------VE----VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchh-------HH----HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 7631 12 22445567999999999877766666665554432 2689999999999865
No 212
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=5.5e-13 Score=87.43 Aligned_cols=127 Identities=11% Similarity=0.033 Sum_probs=84.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+++++|.+.+|||+|+-..++......-.+..+..-..+-..... +...+++|||.|.. ..+.+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~-kRiklQiwDTagqE-----------ryrtiTT 88 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD-KRIKLQIWDTAGQE-----------RYRTITT 88 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc-cEEEEEEEecccch-----------hhhHHHH
Confidence 45899999999999999999988764333333333333332211122 55689999999955 3555666
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
.++++++++|+++|.++.-+-.. ..+.-.|+.. . ....++++|.||||+-+++..+.|.
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIkty-s-w~naqvilvgnKCDmd~eRvis~e~ 148 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTY-S-WDNAQVILVGNKCDMDSERVISHER 148 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheee-e-ccCceEEEEecccCCccceeeeHHH
Confidence 78999999999999984433222 3444444333 1 2236999999999998776544443
No 213
>PRK12739 elongation factor G; Reviewed
Probab=99.48 E-value=8.1e-13 Score=109.16 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=85.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc---C-------------CCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
....++|+++|..++|||||+++|+........ . ...+.|.........+ ++..+.++||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence 456789999999999999999999742110000 0 1235566666666677 7889999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+ +...+...++.+|++++|+|+.+.....+...++.+... ..|+++++||+|+...
T Consensus 84 ~~-----------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VD-----------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-----GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HH-----------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 53 112233455566999999999877777766666655442 2678999999999865
No 214
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.48 E-value=8.5e-13 Score=106.50 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=75.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-----------------CCceEEEEeCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLF 80 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~v~DtpG~~ 80 (173)
+.+.|+++|.+++|||||+|+|.+....... +.+.|........... +...+.+|||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4578999999999999999999987642221 1112211111111000 11248899999965
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
. +.......++.+|++++|+++++.........++.++.. ..|+++++||+|+..
T Consensus 81 ~-----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 A-----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred h-----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 3 222223456788999999999876666665655555432 268999999999874
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=99.47 E-value=8.6e-13 Score=102.50 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=80.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cCCCCccceeeEEEEEEeeCCceEEEEeCCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~ 81 (173)
..+..+++++|..++|||||+++|++...-.. .-...+.|.......... ++..+.++||||+.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH-
Confidence 45668999999999999999999987321000 001234555554444444 56788999999954
Q ss_pred CCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 82 FSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++..........+|++++|+++...+.......+..+... + ..++++++||+|+.+.
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g---~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-G---VPYLVVFLNKVDLVDD 143 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCEEEEEEEecCCcch
Confidence 2222223344577999999999866666666666655443 1 1347789999998743
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.47 E-value=5.7e-13 Score=95.39 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------CCCCccceeeEEEEEEee----CCceEEEEeCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG 78 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~v~DtpG 78 (173)
++++++|..|+|||||+++|+........ ....+.+.........+. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 36899999999999999999864322110 000112222222222221 235789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
..+. .......+..+|++++|+|+.+.........++.... .. .|+++|+||+|+.
T Consensus 81 ~~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL 136 (213)
T ss_pred Ccch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence 8753 1222344557799999999986665544444333322 22 7899999999986
No 217
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.47 E-value=8.7e-13 Score=94.86 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+|+++|+.||||||+.+.+.++..+ ......+.|......++.......+.+||.||......+.- ..+. ...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~--~~~~----~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF--NSQR----EEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH--TCCH----HHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc--cccH----HHH
Confidence 6899999999999999999987632 33345567777776666553667999999999986533210 0001 124
Q ss_pred cCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+++++++|||+|+.+.--.++ ..+.+.+..+.......++.+++-|+|.+.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 667899999999973322333 3333333333332334789999999999865
No 218
>PRK10218 GTP-binding protein; Provisional
Probab=99.47 E-value=2.2e-12 Score=104.43 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=83.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC-Ccccc-------------CCCCccceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRR-AFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
...++|+++|..++|||||+++|+... .+... -...+.|.........+ ++..+.+|||||..++
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df 81 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADF 81 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchh
Confidence 456899999999999999999998632 11111 01234555555566666 7789999999998753
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
. ..+..+++.+|++++|+|+.+.........+..+.+. ..|.++++||+|+...
T Consensus 82 ~-----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~~a 135 (607)
T PRK10218 82 G-----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-----GLKPIVVINKVDRPGA 135 (607)
T ss_pred H-----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-----CCCEEEEEECcCCCCC
Confidence 1 2223455678999999999866666555555544432 2678999999998755
No 219
>PRK00007 elongation factor G; Reviewed
Probab=99.47 E-value=1.3e-12 Score=107.92 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=85.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC---CCCccccC-------------CCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG---RRAFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~---~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
..+.++|+++|..++|||||+++|+. ........ ...+.|.........+ .+..+.++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 45678999999999999999999973 21110000 1234566665666666 7889999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++ ..+.. ...+.+|++++|+|+...+...+...++.+.+. ..|.++++||+|+...
T Consensus 86 ~~f-------~~ev~----~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDF-------TIEVE----RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-----KVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHH-------HHHHH----HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 641 12333 344456999999999878777777776666553 2678999999999865
No 220
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.47 E-value=2.5e-12 Score=104.12 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--ccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
+|+++|..++|||||+++|++... +... ...+.|.........+ .+..+.+|||||.. .+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE-~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEE-KKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhH-hcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHHH
Confidence 689999999999999999997431 1111 1234566665555666 56889999999953 3333444
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+..+|++++|+++++.........+..+.. .+ ..++++|+||+|+.+.
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lg---i~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LG---IPHTIVVITKADRVNE 118 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEECCCCCCH
Confidence 56678899999999986655555444444332 22 1349999999999864
No 221
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.4e-12 Score=98.16 Aligned_cols=130 Identities=21% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccc-----cCCCCccceeeEEEEEEeeC-C--ceEEEEeCCCCCCCCCCcHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMQRTVLKD-G--QVVNVIDTPGLFDFSAGSEF 88 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~-~--~~~~v~DtpG~~~~~~~~~~ 88 (173)
.-..+++++|++|.|||||||+|++...... .......|............ + .++.|+||||+++.-.+..-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3457899999999999999999988754221 11111123333333333312 2 37899999999987554322
Q ss_pred -------HHHHHHHHHHh---------ccCCceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 89 -------VGMEIVKCIGL---------AKDGIHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 89 -------~~~~~~~~~~~---------~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+..++.+++.. .-.++|++||.+..+ ..+.+-+...++.+... .+++-|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence 23344444321 122689999999874 35788888887777765 78999999999997
Q ss_pred C
Q 043441 152 D 152 (173)
Q Consensus 152 ~ 152 (173)
.
T Consensus 173 ~ 173 (366)
T KOG2655|consen 173 K 173 (366)
T ss_pred H
Confidence 6
No 222
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=8e-13 Score=101.91 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=87.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc-cceeeEEEEEEeeCCceEEEEeCCCCCC-CCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMQRTVLKDGQVVNVIDTPGLFD-FSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~v~DtpG~~~-~~~~~~~~~~~~~ 94 (173)
..+..++++|++++|||||+|+|..... ...++.+ .|.+.-...++. ++..+.+.||+|+.+ .....+..+ .
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~g---I 339 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALG---I 339 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHh---H
Confidence 4568999999999999999999999876 3344444 444444555555 999999999999998 222223222 2
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc-------cccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK-------KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~iv~tk~D~~~~ 152 (173)
..++.....+|++++|+|+....+.++....+.+...-.. ....+++++.||.|...+
T Consensus 340 ~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 340 ERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2233455678999999999644444444444444432111 122689999999998865
No 223
>PRK00049 elongation factor Tu; Reviewed
Probab=99.46 E-value=1.3e-12 Score=101.54 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=81.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcc--------------ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~ 81 (173)
..+..+++++|..++|||||+++|++...-. ..-...+.|.......... ++..+.++||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~- 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA- 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH-
Confidence 3566899999999999999999998732100 0001234555554444444 56789999999964
Q ss_pred CCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEE-EEEeCCCCCC
Q 043441 82 FSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMI-VVFTGGDELE 151 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-iv~tk~D~~~ 151 (173)
++...+......+|++++|+|+...........+..+... + .|.+ +++||+|+..
T Consensus 87 ----------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVD 142 (396)
T ss_pred ----------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcc
Confidence 3444444556788999999999866666666666655543 2 4554 6899999974
No 224
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.46 E-value=2.1e-12 Score=104.58 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=81.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC-Ccccc-------------CCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRR-AFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~ 85 (173)
++|+++|..++|||||+++|+... .+... -...+.|.........+ ++..+.+|||||+.++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 579999999999999999998532 11111 01235666666677777 7889999999997642
Q ss_pred cHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 86 SEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+...++.+|++++|+|+.+........+++.+.+. . .|.++++||+|+...
T Consensus 78 --------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~--ip~IVviNKiD~~~a 131 (594)
T TIGR01394 78 --------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---G--LKPIVVINKIDRPSA 131 (594)
T ss_pred --------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---C--CCEEEEEECCCCCCc
Confidence 22223445677999999999866655555665555442 2 678999999998654
No 225
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.45 E-value=1.5e-12 Score=93.54 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------ccCCCCccceeeEEEEEEeeCCceE
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDGQVV 71 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (173)
+|+++|..++|||||+.+|+...... ..-...+.|.........+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 47999999999999999986321100 0011234556666666666 78899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-------CCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 72 NVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-------FPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 72 ~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
.++||||+.+ +...+......+|++++|+|+.+. ........+... ..++ ..|+++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEEE
Confidence 9999999643 122222345678999999999852 112222222222 2222 25789999
Q ss_pred eCCCCCC
Q 043441 145 TGGDELE 151 (173)
Q Consensus 145 tk~D~~~ 151 (173)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999983
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.45 E-value=1.3e-12 Score=101.64 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=78.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC------CCcc--------ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR------RAFK--------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~------~~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~ 81 (173)
..+..+++++|..++|||||+++|++. ..+. ..-...+.|.......... ++..+.++||||+.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 456789999999999999999999843 1000 0001234555554444444 567899999999753
Q ss_pred CCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 82 FSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..........+|++++|+++.+.........+..+... + ..++++++||+|+...
T Consensus 88 -----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g---i~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 -----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-G---VPYIVVFLNKCDMVDD 143 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCEEEEEEEecccCCH
Confidence 222222334567999999999866666665555555443 1 1345578999998753
No 227
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.45 E-value=2.1e-12 Score=104.54 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-----------------CCceEEEEeCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTP 77 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~v~Dtp 77 (173)
+..+.+.|+++|.+++|||||+++|.+........ .+.|........... .-..+.+||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~--g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTP 79 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA--GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTP 79 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCC--CceEEeeceeeccccccccccceeccccccccccCCEEEEECC
Confidence 34567899999999999999999998765322221 111111110000000 00127899999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 78 GLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
|...+ .......+..+|++++|+|+++.+.......++.+... ..|+++++||+|+.
T Consensus 80 G~e~f-----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 80 GHEAF-----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred ChHHH-----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 97642 22222345678999999999876666666665554432 27899999999986
No 228
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.45 E-value=1.5e-12 Score=103.17 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=79.9
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cC-----------------CCCccceeeEEE
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQ 61 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~-----------------~~~~~t~~~~~~ 61 (173)
.+......+++++|..++|||||++.|+....... +. ...+.|......
T Consensus 21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 34456779999999999999999999875432111 10 012345555555
Q ss_pred EEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEE
Q 043441 62 RTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMI 141 (173)
Q Consensus 62 ~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 141 (173)
.... ++..+.++||||+.+ ...++. .....+|++++|+|+...+.......+..+ ..++. .+++
T Consensus 101 ~~~~-~~~~i~~iDTPGh~~-------f~~~~~----~~l~~aD~allVVDa~~G~~~qt~~~~~l~-~~lg~---~~iI 164 (474)
T PRK05124 101 YFST-EKRKFIIADTPGHEQ-------YTRNMA----TGASTCDLAILLIDARKGVLDQTRRHSFIA-TLLGI---KHLV 164 (474)
T ss_pred Eecc-CCcEEEEEECCCcHH-------HHHHHH----HHHhhCCEEEEEEECCCCccccchHHHHHH-HHhCC---CceE
Confidence 5555 667899999999542 122222 334678999999999766554333332222 22232 5789
Q ss_pred EEEeCCCCCCC
Q 043441 142 VVFTGGDELED 152 (173)
Q Consensus 142 iv~tk~D~~~~ 152 (173)
+++||+|+...
T Consensus 165 vvvNKiD~~~~ 175 (474)
T PRK05124 165 VAVNKMDLVDY 175 (474)
T ss_pred EEEEeeccccc
Confidence 99999999854
No 229
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.45 E-value=3.3e-13 Score=89.53 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=67.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
++++++|++|||||||+++|.+... ....|... .+ .+ .+|||||=+- + ...+.+.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i-----~~-~~---~~IDTPGEyi---E----~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAI-----EY-YD---NTIDTPGEYI---E----NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCcccee-----Ee-cc---cEEECChhhe---e----CHHHHHHHHH
Confidence 5899999999999999999998552 11122222 22 22 2699999552 1 2234455555
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
...+++.++++.|+++....-.... ...| ..|++-|+||.|+.
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~f----a~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGF----ASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchh----hccc----CCCEEEEEECccCc
Confidence 5668899999999985443333222 2222 27899999999999
No 230
>PLN03127 Elongation factor Tu; Provisional
Probab=99.45 E-value=2.2e-12 Score=101.46 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=81.6
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCC------c------c--ccCCCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRA------F------K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
+...+..+|+++|..++|||||+++|++... . + ..-...+.|.+........ ++..+.++||||+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh 134 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGH 134 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCc
Confidence 3456778899999999999999999974210 0 0 0011245566655555555 6678999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EEEEEeCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MIVVFTGGDELE 151 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~ 151 (173)
.+ ....+. .....+|++++|+|+.+.....+...+..+... + .| +++++||+|+..
T Consensus 135 ~~-------f~~~~~----~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv~ 191 (447)
T PLN03127 135 AD-------YVKNMI----TGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G----VPSLVVFLNKVDVVD 191 (447)
T ss_pred cc-------hHHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEeeccCC
Confidence 63 122233 233458999999999867666666666655543 1 45 678999999985
No 231
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.44 E-value=3.2e-12 Score=102.27 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=79.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcc--ccC------------------CCCccceeeEEEEEEeeCCceEEEEeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFK--SRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~v~Dt 76 (173)
...++++++|..++|||||+++|+...... .+. ...+.+.........+ ++..+.++||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 567899999999999999999985321110 000 0113344445555666 7789999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
||..+. ......++..+|++++|+|+.+.+......+++.... ...|+++++||+|+...
T Consensus 88 PG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDF-----------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-----RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhH-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccCC
Confidence 997532 2222334567799999999986666555555443332 22789999999998754
No 232
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.44 E-value=6.3e-13 Score=90.28 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=79.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||+|+|.+.............+..-..+...+.. ....+++|||.|.. ++.+.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~-~~vtlQiWDTAGQE-----------RFqsL 74 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDD-RSVTLQIWDTAGQE-----------RFQSL 74 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcC-eEEEEEEEecccHH-----------Hhhhc
Confidence 3458999999999999999999988774332222223333333333332 33578999999954 45555
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHc-cc-ccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFG-KK-VFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-~~-~~~~~~iv~tk~D~~~~ 152 (173)
-..+|+++|+++++++..+.-+-+. ..|-+.+..... .+ -.-|++|+.||.|.-..
T Consensus 75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 4579999999999999873322221 244443333222 11 22399999999998653
No 233
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.44 E-value=2.3e-12 Score=104.45 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=73.8
Q ss_pred cCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCce
Q 043441 26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIH 105 (173)
Q Consensus 26 G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (173)
|++|+||||++|++++... ..+ ..++.|.+.......+ ++..+.++||||..+...... .+++.+.. ...+.+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8999999999999999764 222 3445566655555666 677899999999987543221 11222111 1234789
Q ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 106 AVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 106 ~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++++|+|++ .+.... .....+.+ . ..|+++++||+|+.+.
T Consensus 75 vvI~VvDat-~ler~l-~l~~ql~~---~--~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 75 LVVNVVDAS-NLERNL-YLTLQLLE---L--GIPMILALNLVDEAEK 114 (591)
T ss_pred EEEEEecCC-cchhhH-HHHHHHHh---c--CCCEEEEEehhHHHHh
Confidence 999999998 443322 22222222 2 2799999999998754
No 234
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=9.4e-13 Score=87.82 Aligned_cols=130 Identities=14% Similarity=0.040 Sum_probs=92.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+++++|.+-+|||+|+..++......-.....+..-..+...+.......+++|||+| .++++++.+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtag-----------qerfrsitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-----------QERFRSITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-----------hHHHHHHHH
Confidence 368999999999999999999876642222222222222222223322456899999999 457889999
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
++|++.-++++|+|++++-+-+. ..|+++.....+...+.-+.+|.+|+|+...+..+.++
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE 138 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE 138 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH
Confidence 99999999999999997666553 67777777766644445677899999998665555444
No 235
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.44 E-value=6.7e-12 Score=102.09 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCcc-ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.|+++|..++|||||+++|+|...-. ......+.|....+......++..+.+|||||+. .+.+.+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 68999999999999999999854210 1112235666555444444356678999999963 23333335
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....+|++++|+++.+.+.......+..+... + ..++++|+||+|+.+.
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-g---i~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-G---NPMLTVALTKADRVDE 119 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEECCccCCH
Confidence 56678999999999866666666655544332 2 1456899999999754
No 236
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1e-11 Score=84.49 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccc-----cCCCC---ccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKS-----RASSS---GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~-----~~~~~---~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~ 88 (173)
....+|++.|+.++||||++..+........ ..+.. ..|....+.......+..+.+++|||+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~-------- 79 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE-------- 79 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH--------
Confidence 3567899999999999999999987663221 11122 2455555666666344799999999965
Q ss_pred HHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc-ccHHHHhcc
Q 043441 89 VGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE-ETLEDYLGR 163 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-~~~~~~~~~ 163 (173)
++.-++....+++.+.++++|.+...+.+....++.+..... .|++|+.||.|+.+... +.+.++++.
T Consensus 80 ---RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~ 148 (187)
T COG2229 80 ---RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL 148 (187)
T ss_pred ---HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence 444445556778899999999986767666677666666532 78999999999987642 345566655
No 237
>PRK13351 elongation factor G; Reviewed
Probab=99.43 E-value=3.2e-12 Score=105.77 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcc-------ccC---------CCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFK-------SRA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~-------~~~---------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
....++|+++|..|+|||||+++|+...... .+. ...+.|.........+ .+..+.+|||||.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~ 83 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGH 83 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCc
Confidence 3456899999999999999999997532100 000 0123444444555666 7789999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+ +......+++.+|++++|+|+++.........++.+... ..|+++++||+|+...
T Consensus 84 ~d-----------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 ID-----------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA 140 (687)
T ss_pred HH-----------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence 64 222233456677999999999866666655555444332 2689999999998865
No 238
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.43 E-value=3.6e-12 Score=100.08 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=77.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------c---------------CCCCccceeeEEEEEEee
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLK 66 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~ 66 (173)
..+..+++++|..++|||||++.|+....... + -...+.|..........
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 44568899999999999999999974211000 0 01235566666556665
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC---CCHHHHHHHHHHHHHHcccccceEEEE
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR---FPQEEEAALHSWQTLFGKKVFDYMIVV 143 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~iv 143 (173)
++..+.+|||||..+ +...+...+..+|++++|+|+++. ........+. +...++ ..+++++
T Consensus 83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEE
Confidence 677899999999542 233333456678999999999855 2222222121 222222 2579999
Q ss_pred EeCCCCCCC
Q 043441 144 FTGGDELED 152 (173)
Q Consensus 144 ~tk~D~~~~ 152 (173)
+||+|+...
T Consensus 148 iNK~Dl~~~ 156 (426)
T TIGR00483 148 INKMDSVNY 156 (426)
T ss_pred EEChhccCc
Confidence 999999753
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.42 E-value=4.7e-12 Score=101.30 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcc--ccC------------------CCCccceeeEEEEEEeeCCceEEEEeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFK--SRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~v~Dt 76 (173)
...++++++|..++|||||.++|+...... .+. ...+.+.........+ ++..+.++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 567899999999999999999986311100 000 0112334444455666 7788999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
||..+.. .+.. .+++.+|++++|+|+.+........+++.... ...|+++++||+|+...+
T Consensus 87 PG~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFS-------EDTY----RTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-----RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhH-------HHHH----HHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-----cCCCEEEEEECCcccccC
Confidence 9976531 1222 34456799999999987765555454443332 227899999999987653
No 240
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.42 E-value=6.9e-12 Score=90.33 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCC-------------Cccce------------------------eeEEEEE
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASS-------------SGVTS------------------------TCEMQRT 63 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-------------~~~t~------------------------~~~~~~~ 63 (173)
+++++|..++|||||++.+.... +..+... .+.|. .......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~-~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGE-LDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-cCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 57899999999999999998533 2111100 00000 0000111
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEE
Q 043441 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVV 143 (173)
Q Consensus 64 ~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv 143 (173)
.. .+..+.++||||... ..+.+...+. ...+|.+++|+++...+...+...++++.+. . .|+++|
T Consensus 80 ~~-~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~---~--ip~ivv 144 (224)
T cd04165 80 EK-SSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL---N--IPVFVV 144 (224)
T ss_pred ee-CCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc---C--CCEEEE
Confidence 22 567899999999653 1222222211 1367999999999877887788887777664 1 679999
Q ss_pred EeCCCCCCC
Q 043441 144 FTGGDELED 152 (173)
Q Consensus 144 ~tk~D~~~~ 152 (173)
+||+|+...
T Consensus 145 vNK~D~~~~ 153 (224)
T cd04165 145 VTKIDLAPA 153 (224)
T ss_pred EECccccCH
Confidence 999998754
No 241
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.42 E-value=4.9e-12 Score=89.33 Aligned_cols=115 Identities=17% Similarity=-0.021 Sum_probs=71.6
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhCCCCcccc--CCCCcccee----eEEE---------EEEeeCCceEEEEeCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGN-SILGRRAFKSR--ASSSGVTST----CEMQ---------RTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin-~l~~~~~~~~~--~~~~~~t~~----~~~~---------~~~~~~~~~~~v~DtpG~~~~ 82 (173)
..+|+++|..|+|||||+. .+.+.. +..+ .....+|.. .... .+.. ....+.+|||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~-~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG-VSVSLRLWDTFGDHDK 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCC-EEEEEEEEeCCCChhh
Confidence 3689999999999999996 554432 2111 111112221 1000 1111 2357899999996531
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+. ..+++++|++++|++.+++.+-+.. .|++.+..... ..|+++|.||+|+.+
T Consensus 80 ----------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~ 134 (195)
T cd01873 80 ----------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY 134 (195)
T ss_pred ----------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 11 2368899999999999865554432 46666665432 268999999999764
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.41 E-value=4.2e-12 Score=100.42 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=80.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcc--------------ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~ 80 (173)
...+..+++++|..++|||||+++|++..... ..-...+.|.......... ++..+.++||||+.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~ 155 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA 155 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHH
Confidence 35667889999999999999999998522100 0111234455554444555 67789999999965
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+ ...++. .....+|+.++|+|+.+......+..+..+... + ..++++++||+|+...
T Consensus 156 ~-------f~~~~~----~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-g---i~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 156 D-------YVKNMI----TGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-G---VPNMVVFLNKQDQVDD 212 (478)
T ss_pred H-------HHHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEecccccCH
Confidence 3 222333 344567999999999866666555555544433 2 1347889999998753
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.40 E-value=6.4e-12 Score=103.02 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=78.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cC-----------------CCCccceeeEEEEE
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRT 63 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~-----------------~~~~~t~~~~~~~~ 63 (173)
...+..+++++|..++|||||++.|+....... +. ...+.|........
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345567899999999999999999986432111 00 01233444444455
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEE
Q 043441 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVV 143 (173)
Q Consensus 64 ~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv 143 (173)
.. ++..+.++||||+.+ ....+. .....+|++++|+|+...........+..+... +. .+++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-------f~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-------YTRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-------HHHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 55 667899999999542 122232 345578999999999766554443333333332 21 578899
Q ss_pred EeCCCCCCC
Q 043441 144 FTGGDELED 152 (173)
Q Consensus 144 ~tk~D~~~~ 152 (173)
+||+|+...
T Consensus 164 vNK~D~~~~ 172 (632)
T PRK05506 164 VNKMDLVDY 172 (632)
T ss_pred EEecccccc
Confidence 999999753
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.39 E-value=5e-12 Score=98.56 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cC-----------------CCCccceeeEEEEEEeeCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTVLKDG 68 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (173)
.+++++|..++|||||++.|+....... +. ...+.|.+.......+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 3799999999999999999864321100 00 1124455555555555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 69 QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 69 ~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
..+.++||||+.+ ....+. .....+|++++|+|+...+.......+..+... + ..++++++||+|
T Consensus 80 ~~~~liDtPGh~~-------f~~~~~----~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~---~~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-------YTRNMA----TGASTADLAVLLVDARKGVLEQTRRHSYIASLL-G---IRHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-------HHHHHH----HHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-C---CCcEEEEEEecc
Confidence 7899999999542 122232 345578999999999866655544433333332 2 156899999999
Q ss_pred CCCC
Q 043441 149 ELED 152 (173)
Q Consensus 149 ~~~~ 152 (173)
+...
T Consensus 145 ~~~~ 148 (406)
T TIGR02034 145 LVDY 148 (406)
T ss_pred cccc
Confidence 9854
No 245
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.39 E-value=9.6e-12 Score=100.92 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=75.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCc------cccC-------CCCccceeeEEEEEEee----CCceEEEEeCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAF------KSRA-------SSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLF 80 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~------~~~~-------~~~~~t~~~~~~~~~~~----~~~~~~v~DtpG~~ 80 (173)
..++++++|..++|||||+++|+..... .... ...+.|.........+. ....+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 3578999999999999999999864211 1111 11244544444444331 12478999999987
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++ ...+..++..+|++++|+|+++..+......+....+ .. .|+++|+||+|+...
T Consensus 82 dF-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 82 DF-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA 137 (595)
T ss_pred HH-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc
Confidence 52 2222345667899999999986665554333222222 22 689999999998644
No 246
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.37 E-value=6.6e-12 Score=88.51 Aligned_cols=128 Identities=22% Similarity=0.130 Sum_probs=84.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+++++|.+|+|||++...+++... .....+...+...+...+.. ..-.+.|+||+|..+.... -
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~-~~~~l~ilDt~g~~~~~~~-----------~ 68 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDG-EVCMLEILDTAGQEEFSAM-----------R 68 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECC-EEEEEEEEcCCCcccChHH-----------H
Confidence 357899999999999999988887763 33333333333444444432 3347789999995443211 1
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
..+....|++++|++.+++-+-++ ..+.+.|.+..+. ...|+++|.||+|+......+.++
T Consensus 69 ~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee 130 (196)
T KOG0395|consen 69 DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE 130 (196)
T ss_pred HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH
Confidence 235667799999999986666554 4555555443333 236999999999998755455554
No 247
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.37 E-value=3.2e-12 Score=83.86 Aligned_cols=126 Identities=15% Similarity=0.061 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
....+.++|-.+||||||+|.+...... ..-.+|.....+.+.- .+..+.+||.||.. .++..+
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~tk-gnvtiklwD~gGq~-----------rfrsmW 82 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQP-----------RFRSMW 82 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEecc-CceEEEEEecCCCc-----------cHHHHH
Confidence 3467999999999999999998754321 2223444445555554 67789999999976 456666
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
..+++++++|+||+|+.+ ..... ..-+++..++... ...|++++.||.|+.... +.++.+.+
T Consensus 83 erycR~v~aivY~VDaad-~~k~~-~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~li~r 146 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAAD-PDKLE-ASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIALIER 146 (186)
T ss_pred HHHhhcCcEEEEEeecCC-cccch-hhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHHHHHH
Confidence 688999999999999984 32222 1122233333332 336999999999999874 66666555
No 248
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.35 E-value=3.5e-11 Score=86.78 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=73.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..++..|+++|.+|+|||||+|.|++........ ....+. ......+..+.++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~-~~~g~i-----~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGPI-----TVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccc-cccccE-----EEEecCCceEEEEeCCchH----------HHHHH
Confidence 5677889999999999999999998753211111 111111 1111166788999999732 23333
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 152 (173)
. ...+|++++++|+...+...+...++.+.+. + .| +++|+||+|++..
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCCc
Confidence 3 3456999999999867776666665555543 1 44 4559999999854
No 249
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.34 E-value=2.9e-11 Score=98.27 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=75.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccc----cC---------CCCccceeeEEEEEEee----CCceEEEEeCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKS----RA---------SSSGVTSTCEMQRTVLK----DGQVVNVIDTPGL 79 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~----~~---------~~~~~t~~~~~~~~~~~----~~~~~~v~DtpG~ 79 (173)
+..++++++|..++|||||+.+|+....... +. ...+.|.........+. ....+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 4568999999999999999999975321100 00 11233443333333331 2457899999998
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++ ...+..++..+|++++|+|+++.........+.... .. ..|+++|+||+|+...
T Consensus 85 ~dF-----------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~---~~--~lpiIvViNKiDl~~a 141 (600)
T PRK05433 85 VDF-----------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---EN--DLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHH-----------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH---HC--CCCEEEEEECCCCCcc
Confidence 753 122223455679999999998666554433332222 22 2689999999998654
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.32 E-value=3.3e-11 Score=94.93 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=74.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccc-----------------------------cCCCCccceeeEEEEEEeeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKD 67 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (173)
.+..+++++|..++|||||+..|+....... .-...+.|.........+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 4567899999999999999998864110000 001234566666666666 7
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC-------CHHHHHHHHHHHHHHcccccceE
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF-------PQEEEAALHSWQTLFGKKVFDYM 140 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 140 (173)
+..+.++||||..+ +...+......+|++++|+|+.... .......+..+... + ..++
T Consensus 84 ~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-g---i~~i 148 (446)
T PTZ00141 84 KYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-G---VKQM 148 (446)
T ss_pred CeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-C---CCeE
Confidence 77999999999653 2333334456789999999997543 12223333333222 2 1457
Q ss_pred EEEEeCCCC
Q 043441 141 IVVFTGGDE 149 (173)
Q Consensus 141 ~iv~tk~D~ 149 (173)
++++||+|.
T Consensus 149 iv~vNKmD~ 157 (446)
T PTZ00141 149 IVCINKMDD 157 (446)
T ss_pred EEEEEcccc
Confidence 899999994
No 251
>PTZ00416 elongation factor 2; Provisional
Probab=99.32 E-value=1e-11 Score=104.39 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=80.7
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeEEEEEEee---------CCce
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------DGQV 70 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~ 70 (173)
+.....++|+++|..++|||||+++|+......... ...+.|.........+. .+..
T Consensus 14 ~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (836)
T PTZ00416 14 DNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFL 93 (836)
T ss_pred hCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceE
Confidence 345677899999999999999999998643211110 00122222222222331 1456
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 71 VNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 71 ~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
+.++||||+.+ +...+....+.+|++++|+++.+.+.......++.+.+. . .|+++++||+|+.
T Consensus 94 i~liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~---~--~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE---R--IRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc---C--CCEEEEEEChhhh
Confidence 89999999875 222234556778999999999877877776666555443 2 6899999999998
No 252
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.30 E-value=4.1e-11 Score=93.52 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=70.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCcccc-CCCCccceeeEEEEE--------------Ee-----------eCCceE
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRT--------------VL-----------KDGQVV 71 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~--------------~~-----------~~~~~~ 71 (173)
+..+|+++|..++|||||+++|.+....... ....+.|....+... .. ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4578999999999999999999874311000 001112211111000 00 014678
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC-CHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 72 NVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF-PQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 72 ~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
.++||||..+ +...+......+|++++|+|+++.. .......+..+ ..++ ..++++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEccccC
Confidence 9999999642 2222333445679999999998554 33333333333 2222 25789999999998
Q ss_pred CC
Q 043441 151 ED 152 (173)
Q Consensus 151 ~~ 152 (173)
..
T Consensus 148 ~~ 149 (406)
T TIGR03680 148 SK 149 (406)
T ss_pred CH
Confidence 54
No 253
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.6e-11 Score=90.98 Aligned_cols=130 Identities=15% Similarity=0.251 Sum_probs=89.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeE-EEEEEe----e------C------------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVL----K------D------------------ 67 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~----~------~------------------ 67 (173)
...+-|+++|+...||||||+.|+..........+.+.|.... ...... + +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4567899999999999999999998876433333332222111 111110 0 0
Q ss_pred ----------CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHH--HHHHHHHHHHHHccc
Q 043441 68 ----------GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQE--EEAALHSWQTLFGKK 135 (173)
Q Consensus 68 ----------~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~ 135 (173)
-..+.++||||+.+...+.-.....+...+.++..++|.|++++|+. .++-. -+..+..++ +.+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~aLk---G~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDALK---GHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHHhh---CCc
Confidence 02489999999998765544556667777888999999999999996 55444 345544444 334
Q ss_pred ccceEEEEEeCCCCCCC
Q 043441 136 VFDYMIVVFTGGDELED 152 (173)
Q Consensus 136 ~~~~~~iv~tk~D~~~~ 152 (173)
..+-||+||+|..+.
T Consensus 212 --dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDT 226 (532)
T ss_pred --ceeEEEeccccccCH
Confidence 689999999999976
No 254
>PTZ00258 GTP-binding protein; Provisional
Probab=99.30 E-value=4.7e-11 Score=91.82 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC----------------CceEEEEeCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGL 79 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~v~DtpG~ 79 (173)
.....+|++||.+++|||||+|+|++.... ....+..|..........++ ...+.++||||+
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 356678999999999999999999887642 22233444444444443311 124899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
.......+.++.++.. ..+.+|++++|++..
T Consensus 96 v~ga~~g~gLg~~fL~----~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLS----HIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHH----HHHHCCEEEEEEeCC
Confidence 9765544555555554 345679999999973
No 255
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.29 E-value=2.8e-11 Score=89.28 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=58.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC----------------ceEEEEeCCCCCCCCCC
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFSAG 85 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~v~DtpG~~~~~~~ 85 (173)
+++||.+++|||||+|+|++.... ....+..|...........+. ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~--~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc--cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 579999999999999999998752 222334444444433333121 14899999999976555
Q ss_pred cHHHHHHHHHHHHhccCCceEEEEEeec
Q 043441 86 SEFVGMEIVKCIGLAKDGIHAVLVGFSV 113 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~ 113 (173)
.+.++.++... .+.+|++++|+++
T Consensus 79 ~~glg~~fL~~----i~~~D~li~VV~~ 102 (274)
T cd01900 79 GEGLGNKFLSH----IREVDAIAHVVRC 102 (274)
T ss_pred hhHHHHHHHHH----HHhCCEEEEEEeC
Confidence 55556555543 4467999999987
No 256
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.29 E-value=6.9e-12 Score=104.03 Aligned_cols=121 Identities=18% Similarity=0.246 Sum_probs=77.0
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCC--------------ccccCCCCccceeeEEE----EEEeeCCceEEEEe
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRA--------------FKSRASSSGVTSTCEMQ----RTVLKDGQVVNVID 75 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~----~~~~~~~~~~~v~D 75 (173)
......++|+++|..++|||||++.|+.... +.......+.|...... ...+ .+..+.++|
T Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liD 92 (720)
T TIGR00490 14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLID 92 (720)
T ss_pred hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEe
Confidence 3445678999999999999999999874211 00000011223222211 1233 566899999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 76 TPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
|||+.+.. .+. ...++.+|++++|+++.+.........++.+.+. . .|.++++||+|+..
T Consensus 93 TPG~~~f~-------~~~----~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~ 152 (720)
T TIGR00490 93 TPGHVDFG-------GDV----TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE---N--VKPVLFINKVDRLI 152 (720)
T ss_pred CCCccccH-------HHH----HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc---C--CCEEEEEEChhccc
Confidence 99998632 122 2445677999999999866666655554443322 2 56789999999974
No 257
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.29 E-value=7.4e-11 Score=92.14 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=73.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCccceeeEEEEEEe--------------e-----------CCc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVL--------------K-----------DGQ 69 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~--------------~-----------~~~ 69 (173)
..+..+++++|..++|||||+.+|.+.... ...-...+.|.........+ . ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 455689999999999999999999764210 00001122333222111000 0 025
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC-CHHHHHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 70 VVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF-PQEEEAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 70 ~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
.+.++||||.. ++...+......+|++++|+|+.+.. .......+..+... + ..++++|+||+|
T Consensus 86 ~i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~---i~~iiVVlNK~D 150 (411)
T PRK04000 86 RVSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-G---IKNIVIVQNKID 150 (411)
T ss_pred EEEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-C---CCcEEEEEEeec
Confidence 78999999953 22222333445679999999998554 44444444444322 2 146899999999
Q ss_pred CCCC
Q 043441 149 ELED 152 (173)
Q Consensus 149 ~~~~ 152 (173)
+...
T Consensus 151 l~~~ 154 (411)
T PRK04000 151 LVSK 154 (411)
T ss_pred cccc
Confidence 9864
No 258
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.26 E-value=5.5e-11 Score=100.16 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=79.5
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeEEEEEEee-------------
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK------------- 66 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~------------- 66 (173)
..+...++|+++|..++|||||+.+|+......... ...+.|.........+.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 346678999999999999999999997543211110 01122333222233331
Q ss_pred --CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 67 --DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 67 --~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
.+..+.++||||+.+ +........+.+|+.++|+|+.+.+....+..++.+.+. . .|+++++
T Consensus 94 ~~~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~--~p~i~~i 157 (843)
T PLN00116 94 DGNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---R--IRPVLTV 157 (843)
T ss_pred CCCceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---C--CCEEEEE
Confidence 145678999999874 222223445667999999999877776666665554432 2 7899999
Q ss_pred eCCCCC
Q 043441 145 TGGDEL 150 (173)
Q Consensus 145 tk~D~~ 150 (173)
||+|++
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999998
No 259
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.26 E-value=2.7e-11 Score=89.40 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=68.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE-EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+..-++++||.+++|||||+|.|++... ....++.|+.... .-..+ ++-.++++|+||+.+........+.+..
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceee
Confidence 34567899999999999999999999763 4444444444443 33445 8899999999999987665554455555
Q ss_pred HHHHhccCCceEEEEEeecC
Q 043441 95 KCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~ 114 (173)
...+.||.+++|+|+.
T Consensus 136 ----sv~R~ADlIiiVld~~ 151 (365)
T COG1163 136 ----SVARNADLIIIVLDVF 151 (365)
T ss_pred ----eeeccCCEEEEEEecC
Confidence 5677889999999997
No 260
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.25 E-value=9.2e-11 Score=89.33 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 83 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~v~DtpG~~~~~ 83 (173)
.++++||.+++|||||+|+|++.... -...+..|...........+. ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 58999999999999999999997731 122233443444333333121 258999999999765
Q ss_pred CCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 84 AGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
...+.++.++.. ..+.+|++++|+++.
T Consensus 81 ~~g~glg~~fL~----~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLA----NIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHH----HHHhCCEEEEEEeCC
Confidence 444445555553 455679999999983
No 261
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.7e-11 Score=84.41 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=79.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
....++++|+++||||+++-.|....... .-............ ...+..++|.||... +...+....
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~-----TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~ 103 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRG-----TVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYL 103 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccC-----eeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHc
Confidence 34789999999999999998876543211 11122222233333 556689999999763 222233222
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc----cccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK----KVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~iv~tk~D~~~~~ 153 (173)
+.. ..+.+|+||+|.. .+..+-+...+++.+.+-. ....|++|+.||-|+....
T Consensus 104 ~~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 104 KHN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred ccc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 221 3678999999998 7777766777777665443 2346999999999999763
No 262
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.2e-11 Score=80.79 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=85.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....+|+++|--+|||||++..|--.+.. ..-+|.......+.+ ++..+.+||.-|.. .++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~v-----ttvPTiGfnVE~v~y-kn~~f~vWDvGGq~-----------k~R~ 76 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIV-----TTVPTIGFNVETVEY-KNISFTVWDVGGQE-----------KLRP 76 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcc-----cCCCccccceeEEEE-cceEEEEEecCCCc-----------cccc
Confidence 566789999999999999999887554432 224566666777777 89999999999965 3555
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
.++.+++..+++|||+|.+++..-.+ .-+.+...+... ...|+++..||.|+...
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 56678999999999999985543332 222333333222 34799999999998865
No 263
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=6.3e-12 Score=85.17 Aligned_cols=124 Identities=19% Similarity=0.115 Sum_probs=83.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-ccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
+-+...+++++|..++||||+|...+... |..+.... +.....+...+.. ...+..+|||.|.. ++
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqe-----------Ef 82 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQE-----------EF 82 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhH-HHHHHHHHHhccch-----------hH
Confidence 44567899999999999999999988654 33332221 1111111112222 44577899999954 56
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
..+.+.+|+++.+.++|+..+++-+-+- ..|.+.+..... ..|+++|-||+|+++.+.
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~---~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE---RIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc---cCCeEEeeccchhhHhhh
Confidence 6666789999999999999986655442 455555554433 379999999999997643
No 264
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=99.22 E-value=7.5e-11 Score=102.35 Aligned_cols=139 Identities=16% Similarity=0.216 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCC----cHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSR------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG----SEFV 89 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~----~~~~ 89 (173)
+=.+++|++|+||||+++.- |...+... ....+.|..|.+. -....+++||+|..-.+.. ....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHHH
Confidence 55899999999999999875 43321111 0112233333332 3456789999997754421 2333
Q ss_pred HHHHHHHHHhc--cCCceEEEEEeecCCCCCH--H--------HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccH
Q 043441 90 GMEIVKCIGLA--KDGIHAVLVGFSVRSRFPQ--E--------EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETL 157 (173)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~ii~v~~~~~~~~~--~--------~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 157 (173)
...+...++.. .+..+++|+++++.+-+.. . -+..++++.+.++.. .|+++|+||+|++.+ .
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC----H
Confidence 55666666654 4568999999999733321 1 145556666676655 899999999999975 7
Q ss_pred HHHhcccCCCCcc
Q 043441 158 EDYLGRECPKPLK 170 (173)
Q Consensus 158 ~~~~~~~~~~~l~ 170 (173)
++|+.....+..+
T Consensus 260 ~~~f~~l~~~~r~ 272 (1169)
T TIGR03348 260 EEFFADLDAEERE 272 (1169)
T ss_pred HHHHHhCCHHHHh
Confidence 7777775544433
No 265
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.20 E-value=2.4e-11 Score=80.80 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=85.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.-..+++++|..-+|||+|+-..+-...-..-.+........+...+.. ..-.+.+|||+|...+.. ++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErfHA----LG------ 79 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERFHA----LG------ 79 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhhhc----cC------
Confidence 3457899999999999999977665442111111111111111122222 345788999999654321 11
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
..+|++.++.++|+|++++-+-. .+.|...++..+++. .-.+||.||.|+-+.+..+.++
T Consensus 80 -PIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~Vt~qe 140 (218)
T KOG0088|consen 80 -PIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQVTRQE 140 (218)
T ss_pred -ceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhhhHHH
Confidence 14899999999999999665544 478999999999887 7789999999987665444443
No 266
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=76.14 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=86.3
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
+.+.+..+++++|-.+||||||++.|.+.... ....|.......+.......+.+||.-|.. .+
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-----hltpT~GFn~k~v~~~g~f~LnvwDiGGqr-----------~I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-----HLTPTNGFNTKKVEYDGTFHLNVWDIGGQR-----------GI 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChh-----hccccCCcceEEEeecCcEEEEEEecCCcc-----------cc
Confidence 45577899999999999999999999886642 122233333333444244789999998854 46
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH--HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHh
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE--EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYL 161 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 161 (173)
+.+++.+|.+.|.+|||+|.+++-..+ ...+.+.+.+.-- ...|+.|..||-|++... ..++.-
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdlltaa--~~eeia 141 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTAA--KVEEIA 141 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhhc--chHHHH
Confidence 777788999999999999986432222 2333333333211 236899999999998763 444433
No 267
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.4e-10 Score=85.35 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=92.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------cC-----------------CCCccceeeEEEEEE
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMQRTV 64 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~ 64 (173)
+....+++-+|+.-.||||||-.|+-...... +. ...+.|.+..+....
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 44568999999999999999988865332110 00 113778888877777
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 65 LKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 65 ~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
. ..+.+++.||||..+ +.+-+..-..-+|+.|+++|+...+- ++....-.|..+++- .++++++
T Consensus 83 T-~KRkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~Gvl-~QTrRHs~I~sLLGI---rhvvvAV 146 (431)
T COG2895 83 T-EKRKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARKGVL-EQTRRHSFIASLLGI---RHVVVAV 146 (431)
T ss_pred c-ccceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecchhhH-HHhHHHHHHHHHhCC---cEEEEEE
Confidence 7 888999999999663 22222245667799999999973333 233445557777765 7899999
Q ss_pred eCCCCCCCCcccHHHHhc
Q 043441 145 TGGDELEDNEETLEDYLG 162 (173)
Q Consensus 145 tk~D~~~~~~~~~~~~~~ 162 (173)
||+|+.+.+.+..++..+
T Consensus 147 NKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 147 NKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred eeecccccCHHHHHHHHH
Confidence 999999987666665544
No 268
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.3e-09 Score=71.14 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=90.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++.+|-.+|||||++-.|.-... .....|.......+.+ ++..+.+||.-|.. .++..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence 3468999999999999999988764331 2233455666667777 88999999988844 67777
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCCCc-ccHHHHhcc
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELEDNE-ETLEDYLGR 163 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~~~-~~~~~~~~~ 163 (173)
+..++.+..++|||+|..++ ..-...-+++..+.+.+ -..+++|+.||-|+.+... ..+.++++-
T Consensus 78 WrhYy~gtqglIFV~Dsa~~--dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL 145 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR--DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL 145 (180)
T ss_pred HHhhccCCceEEEEEeccch--hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc
Confidence 88899999999999999855 22233444455554443 2247889999999987632 345555543
No 269
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.19 E-value=7.8e-11 Score=80.40 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=40.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
...+++++|.+|+|||||+|+|.+......+.. .+.|....... .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEE----cCCCEEEEECcCC
Confidence 356889999999999999999999765444432 33444443322 2345899999995
No 270
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.19 E-value=5.2e-10 Score=85.80 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC----CCccc---------c-CCCCc---cceeeEE---EEEEeeCC----ceE
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR----RAFKS---------R-ASSSG---VTSTCEM---QRTVLKDG----QVV 71 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~----~~~~~---------~-~~~~~---~t~~~~~---~~~~~~~~----~~~ 71 (173)
......+.++|+.++|||||||++++. +.... - .+..+ .|++..+ ...+.... .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345678999999999999999999987 32100 0 11223 4555544 33332223 589
Q ss_pred EEEeCCCCCCCCCCcHHHHHH--------------HHH-----HHHhccCCceEEEEEe-ecC------CCCCHHHHHHH
Q 043441 72 NVIDTPGLFDFSAGSEFVGME--------------IVK-----CIGLAKDGIHAVLVGF-SVR------SRFPQEEEAAL 125 (173)
Q Consensus 72 ~v~DtpG~~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~ii~v~-~~~------~~~~~~~~~~~ 125 (173)
+++||+|+.+...--..-... +.. .-+.....++..++|. |.+ +.....+..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999999754311111111 111 1112233567767766 663 34555567887
Q ss_pred HHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 126 HSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 126 ~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.+++. ..|+++|+|+.|....
T Consensus 174 ~eLk~~-----~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 174 EELKEL-----NKPFIILLNSTHPYHP 195 (492)
T ss_pred HHHHhc-----CCCEEEEEECcCCCCc
Confidence 777775 2899999999997644
No 271
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=6.7e-10 Score=87.10 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=93.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
++++.|.++|-.-.|||||+.+|-+...... ...+.|...-...+..+.+..++|.||||.--+ ..|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF--------~aMR-- 218 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF--------SAMR-- 218 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHHHH--------HHHH--
Confidence 5789999999999999999999988765333 345677777777777778999999999996532 2222
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..-..-.|.+++|+.+.|..-+...+.++..++. ..|+++++||+|+...+
T Consensus 219 -aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 219 -ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGAN 269 (683)
T ss_pred -hccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCC
Confidence 2345566899999999888887777777777764 38999999999998764
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.19 E-value=3.5e-10 Score=93.57 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=73.9
Q ss_pred EcCCCCCHHHHHHHHhCCCCcccc---C-------------CCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 043441 25 VGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (173)
Q Consensus 25 vG~~g~GKStlin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~ 88 (173)
+|..++|||||++.|+........ . ...+.|.........+ .+..+.+|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 589999999999999543221100 0 0124455555556666 7889999999997631
Q ss_pred HHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 89 VGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+. ...+..+|++++++|++..........++.+... ..|+++++||+|....
T Consensus 74 -~~~~----~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEV----ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHH----HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 1122 2345567999999999866665555555444332 2689999999998865
No 273
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4.7e-10 Score=73.31 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=90.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
+...+.+++|.-|+|||.|+..++.+..........+.....+...+.. ....+++|||.| .++++..
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg-qkiklqiwdtag-----------qerfrav 76 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAG-----------QERFRAV 76 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC-cEEEEEEeeccc-----------HHHHHHH
Confidence 4567889999999999999999887764444444444444444555544 567899999999 3467777
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhc
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLG 162 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 162 (173)
..++++++-+.+.|.|++.+-+-+ ...|+-..+.+... ..-++++.||.|+-..+..+.++.-+
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~yeeak~ 141 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYEEAKE 141 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHHHHHH
Confidence 778999999999999998333322 23454444444222 24567888999987665566665443
No 274
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.16 E-value=1.3e-09 Score=84.54 Aligned_cols=89 Identities=18% Similarity=0.069 Sum_probs=57.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe--------------------e---CCceEEEEeC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT 76 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~v~Dt 76 (173)
.+|+++|.+++|||||+|+|++..... ...+..|.......... . ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 479999999999999999999876422 12222332222211110 0 1245789999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
||+.......+.+..++.+ ..+.+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~fL~----~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLD----DLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 9998754433444444443 355679999999996
No 275
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.14 E-value=1.2e-09 Score=72.32 Aligned_cols=121 Identities=17% Similarity=0.073 Sum_probs=76.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh-CCCCccccCCCCccceeeEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL-GRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~-~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
...++++++|.-++|||+++..|+ |.........+....+. ...++.. ....+.++||.|+...+. ++-
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY--~~svet~rgarE~l~lyDTaGlq~~~~---eLp--- 78 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY--VASVETDRGAREQLRLYDTAGLQGGQQ---ELP--- 78 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe--eEeeecCCChhheEEEeecccccCchh---hhh---
Confidence 346899999999999999997765 54443333322211222 2222221 335789999999987421 111
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHH---cccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLF---GKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.++.-+|++++|.+..+. ++.+.++.|+... ..+...|++++.|+.|+.++
T Consensus 79 ----rhy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 79 ----RHYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred ----HhHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 2466677999999887633 3444444454433 23344699999999999755
No 276
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.13 E-value=1.9e-11 Score=79.01 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=77.2
Q ss_pred EEEcCCCCCHHHHHHHHhCCCCcccc-CCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhcc
Q 043441 23 VFVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAK 101 (173)
Q Consensus 23 ~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (173)
+++|.++.|||.++-..-........ .+..+.....+...... +...+++|||.|. +++++....++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~-~kvklqiwdtagq-----------erfrsvt~ayy 68 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDD-KKVKLQIWDTAGQ-----------ERFRSVTHAYY 68 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCC-cEEEEEEeeccch-----------HHHhhhhHhhh
Confidence 47899999999876443221111111 12222222222233322 4457999999994 46777778899
Q ss_pred CCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 102 DGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 102 ~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.+|+++++.|+.++.+-+. ..|+..|.+--... ..++++.||+|+..+
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHE 118 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchh
Confidence 99999999999986766554 57777777764443 678999999998754
No 277
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.5e-09 Score=83.87 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=91.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+.+.|.++|---.|||||+..|-+.+.... ...+.|...-.+..... ....+.|+||||+..+. .|+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt--------~mR 72 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT--------AMR 72 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH--------HHH
Confidence 4678999999999999999999988776333 34567777777777764 34789999999966421 111
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..-..=+|..++|+++.+.+-+...+.++.++.. ..|+++++||+|+.+.+
T Consensus 73 ---aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 73 ---ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-----GVPIVVAINKIDKPEAN 123 (509)
T ss_pred ---hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-----CCCEEEEEecccCCCCC
Confidence 2234456899999999989888888888877775 28999999999999764
No 278
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.13 E-value=6e-11 Score=80.51 Aligned_cols=65 Identities=29% Similarity=0.340 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCC----CCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~ 85 (173)
..+++++|++|+|||||+|+|++......+.. ..+..+.....-+.+ .....++||||+.+....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l--~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL--PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE--TTSEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec--CCCcEEEECCCCCccccc
Confidence 38999999999999999999999755443321 112222112222222 335689999999986543
No 279
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.13 E-value=2.1e-10 Score=79.37 Aligned_cols=58 Identities=33% Similarity=0.397 Sum_probs=43.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
....+++++|.+++|||||+|+|++......+. .++.|...+.... +..+.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEe----CCCEEEEECcCC
Confidence 345799999999999999999999987654443 3455555444332 356899999995
No 280
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.12 E-value=1.5e-09 Score=85.59 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=75.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCc--------------cc---------------cCCCCccceeeEEEEEEee
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAF--------------KS---------------RASSSGVTSTCEMQRTVLK 66 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~--------------~~---------------~~~~~~~t~~~~~~~~~~~ 66 (173)
..+..+++++|..++|||||+-+|+..... .. .-...+.|..........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~- 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence 345688999999999999999887631100 00 001235566666666666
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-CCH---HHHHHHHHHHHHHcccccceEEE
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-FPQ---EEEAALHSWQTLFGKKVFDYMIV 142 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~~i 142 (173)
++..+.++||||.. ++.......+..+|+.++|+++.+. +.. ...++.+.+.-.. .....++++
T Consensus 83 ~~~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~gi~~iIV 150 (447)
T PLN00043 83 TKYYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TLGVKQMIC 150 (447)
T ss_pred CCEEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-HcCCCcEEE
Confidence 67789999999965 3443444556788999999999743 210 0112222222111 111146789
Q ss_pred EEeCCCCC
Q 043441 143 VFTGGDEL 150 (173)
Q Consensus 143 v~tk~D~~ 150 (173)
++||+|+.
T Consensus 151 ~vNKmD~~ 158 (447)
T PLN00043 151 CCNKMDAT 158 (447)
T ss_pred EEEcccCC
Confidence 99999976
No 281
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.2e-09 Score=81.82 Aligned_cols=132 Identities=19% Similarity=0.244 Sum_probs=85.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC-Cccc-------------c---------------CCCCccceeeEEEEEEee
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR-AFKS-------------R---------------ASSSGVTSTCEMQRTVLK 66 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~ 66 (173)
..+..+++++|...+||||++-.|+-.. ..+. + -...+.|........+.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet- 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET- 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-
Confidence 4567899999999999999997774211 1000 0 01236677766666666
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-------CCHHHHHHHHHHHHHHcccccce
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-------FPQEEEAALHSWQTLFGKKVFDY 139 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 139 (173)
+...+.++|+||..++ .+++. ....-+|+.++|+++... ..... ...-.|...++ ..+
T Consensus 83 ~k~~~tIiDaPGHrdF-------vknmI----tGasqAD~aVLVV~a~~~efE~g~~~~gQt-rEH~~La~tlG---i~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHRDF-------VKNMI----TGASQADVAVLVVDARDGEFEAGFGVGGQT-REHAFLARTLG---IKQ 147 (428)
T ss_pred CCceEEEeeCCchHHH-------HHHhh----cchhhccEEEEEEECCCCccccccccCCch-hHHHHHHHhcC---Cce
Confidence 6678999999996542 33333 344556999999999743 11111 12222334434 378
Q ss_pred EEEEEeCCCCCCCCcccHHHHhcc
Q 043441 140 MIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 140 ~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
.++++||+|...-+.+.+++.+..
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~ 171 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSE 171 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHH
Confidence 999999999998766666665554
No 282
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.4e-10 Score=89.04 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=91.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----------------------------------------cc-ce
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS----------------------------------------GV-TS 56 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----------------------------------------~~-t~ 56 (173)
...+|++.|.+.+||||++|+++-....+++..+. .. ..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 44789999999999999999999877666554221 00 00
Q ss_pred eeEEEEEEeeCC------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHH
Q 043441 57 TCEMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQT 130 (173)
Q Consensus 57 ~~~~~~~~~~~~------~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~ 130 (173)
......+.++++ ..+.++|.||+.-. .+...++..+..++|+++||+++.+.++..+++.+....+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc
Confidence 011112222122 36899999999863 2444555567778999999999988888888888766665
Q ss_pred HHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 131 LFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 131 ~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
. +.+++|+.||+|......+-.++..++
T Consensus 260 ~-----KpniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 260 E-----KPNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred c-----CCcEEEEechhhhhcccHHHHHHHHHH
Confidence 4 378999999999987754444444444
No 283
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.12 E-value=9.9e-10 Score=82.87 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=54.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe-----------------------eCCceEEEEeCCC
Q 043441 22 VVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG 78 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~v~DtpG 78 (173)
++++|.+++|||||+|+|++...... ..+..|.......... .....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~--~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIA--NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCccc--CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 57999999999999999998763111 1122222222211110 0224689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
+.........+..++. ..++.+|++++|+++.
T Consensus 79 lv~ga~~~~glg~~fL----~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFL----DDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHH----HHHHHCCEEEEEEeCC
Confidence 9765433333334444 3456779999999996
No 284
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.12 E-value=8.4e-10 Score=87.00 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=86.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....||+|+|.-|+||||||.+|+.....+.-. ......... .-..+.+....++||.--.+ ....+.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-~rl~~i~IP--advtPe~vpt~ivD~ss~~~---~~~~l~~---- 75 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-RRLPRILIP--ADVTPENVPTSIVDTSSDSD---DRLCLRK---- 75 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccccc-ccCCccccC--CccCcCcCceEEEecccccc---hhHHHHH----
Confidence 3456899999999999999999999988533322 111111111 11122555688999984322 1222232
Q ss_pred HHHhccCCceEEEEEeecCCCC--CHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRF--PQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
..+++|++.++...++.- +.-...|+-.+++.++.....|+++|.||+|..+....+.++
T Consensus 76 ----EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 76 ----EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred ----HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 344668888887666322 233578888899998887889999999999999886554444
No 285
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.10 E-value=9e-09 Score=74.23 Aligned_cols=71 Identities=25% Similarity=0.247 Sum_probs=49.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC-CCccccCCCCccceeeEEEEEEee--CCceEEEEeCCCCCCCCCCc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGS 86 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~v~DtpG~~~~~~~~ 86 (173)
..+...|.++|++++|||||+|.|++. ..|..+......|...-....... .+..++++||||+.+.....
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~ 77 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE 77 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc
Confidence 346678999999999999999999998 245545444445544333333221 25789999999999865433
No 286
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.10 E-value=1.5e-09 Score=85.43 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=100.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC-------------------------------------------
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS------------------------------------------- 51 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~------------------------------------------- 51 (173)
....-++|++||...+||||.+.++.....|+-|...
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 3456789999999999999999999888777655311
Q ss_pred ---------CccceeeEEEEEEeeCC---ceEEEEeCCCCCCCC--CCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC
Q 043441 52 ---------SGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFS--AGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF 117 (173)
Q Consensus 52 ---------~~~t~~~~~~~~~~~~~---~~~~v~DtpG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~ 117 (173)
.+.|.......... ++ .+++++|.||+..+- .....+...+.++.+.+..++++||+|++.. ..
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltV-KGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SV 461 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNV-KGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SV 461 (980)
T ss_pred HHHHHhcccCCcccccceEEEee-cCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Cc
Confidence 13444444444444 33 478999999999753 2345566778888889999999999999988 77
Q ss_pred CHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 118 PQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.+-..+-+.....-+. ...+++|+||.|+.+.
T Consensus 462 DAERSnVTDLVsq~DP~--GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPH--GRRTIFVLTKVDLAEK 494 (980)
T ss_pred chhhhhHHHHHHhcCCC--CCeeEEEEeecchhhh
Confidence 77777777767665333 3789999999998865
No 287
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.10 E-value=2.7e-10 Score=82.53 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=44.7
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHH--H-HHcccccceEEEEEeC
Q 043441 70 VVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQ--T-LFGKKVFDYMIVVFTG 146 (173)
Q Consensus 70 ~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~--~-~~~~~~~~~~~iv~tk 146 (173)
..+++||||..+.- .+...+.-+...+... .+.++++++|.. +-+...-.+-+.+. . ++. -+.|+++|+||
T Consensus 117 ~~~liDTPGQIE~F-tWSAsGsIIte~lass--~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK 190 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAF-TWSASGSIITETLASS--FPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYK--TKLPFIVVFNK 190 (366)
T ss_pred CEEEEcCCCceEEE-EecCCccchHhhHhhc--CCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHh--ccCCeEEEEec
Confidence 48999999988641 2222222233333333 457889999986 33333222222222 2 222 23899999999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
.|..+.
T Consensus 191 ~Dv~d~ 196 (366)
T KOG1532|consen 191 TDVSDS 196 (366)
T ss_pred cccccc
Confidence 998865
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.10 E-value=3.3e-10 Score=94.33 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=76.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeEEEEEEe--e-CCceEEEEeCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVL--K-DGQVVNVIDTP 77 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~--~-~~~~~~v~Dtp 77 (173)
..++.++|+++|..++|||||+.+|+......... ...+.|.........+ . .+..+.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 35677899999999999999999997532111100 0012222222222211 1 34578899999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 78 GLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
|+.++ ..+.. ...+.+|++++|+|+........+..++...+. . .|.++++||+|+..
T Consensus 96 G~~df-------~~~~~----~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~---~--~~~iv~iNK~D~~~ 153 (731)
T PRK07560 96 GHVDF-------GGDVT----RAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE---R--VKPVLFINKVDRLI 153 (731)
T ss_pred CccCh-------HHHHH----HHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc---C--CCeEEEEECchhhc
Confidence 98863 22333 345566999999999867766666655544332 2 56799999999873
No 289
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.10 E-value=2.4e-10 Score=79.66 Aligned_cols=120 Identities=19% Similarity=0.082 Sum_probs=82.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...++++||..++|||+++-..+... |.....+.-.........+.......+.+|||.|..+. .+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY--------DrlR--- 70 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY--------DRLR--- 70 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCc-CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccc--------cccc---
Confidence 34789999999999999998877653 55555543332222222221113457899999998874 1222
Q ss_pred HhccCCceEEEEEeecCCCCCHH--HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQE--EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
-.+++.+|++++|++..++.+-+ ...|+-+++...+. .|+++|.||.|+.++
T Consensus 71 plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 71 PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD 124 (198)
T ss_pred ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC
Confidence 13788999999999987555444 35677777766543 899999999999854
No 290
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3e-09 Score=87.34 Aligned_cols=121 Identities=21% Similarity=0.295 Sum_probs=87.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc---cC-------------CCCccceeeEEEEEEeeCC-ceEEEEeCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS---RA-------------SSSGVTSTCEMQRTVLKDG-QVVNVIDTPG 78 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~---~~-------------~~~~~t~~~~~~~~~~~~~-~~~~v~DtpG 78 (173)
....+++.++|...+||||+..+|+-..-..+ .. ...+.|.........+ .+ ..+.+|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 56678999999999999999988864221111 11 1136677777777788 64 8999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+.++. .+..+.+.. +|+.++|+++.........-..+...+. . .|.++++||+|++..+
T Consensus 86 HVDFt-------~EV~rslrv----lDgavvVvdaveGV~~QTEtv~rqa~~~---~--vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFT-------IEVERSLRV----LDGAVVVVDAVEGVEPQTETVWRQADKY---G--VPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccH-------HHHHHHHHh----hcceEEEEECCCCeeecHHHHHHHHhhc---C--CCeEEEEECccccccC
Confidence 99863 344444444 4899999999877776665554444443 2 7999999999999764
No 291
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.09 E-value=6e-10 Score=82.42 Aligned_cols=133 Identities=18% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
....+.+.|.+||++++||||||++|++........ ...|.+...+....+.++.+.+.||.||.+ .-+..+...+
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~dr--LFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF 248 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDR--LFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAF 248 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccch--hheeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHH
Confidence 344567899999999999999999999776644443 335556666666776888999999999996 2334444444
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHH-HHHHHHHHHHcc---cccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEE-AALHSWQTLFGK---KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~~iv~tk~D~~~~ 152 (173)
...+. ....+|.++-|+|++.+.-..++ ..+..+.++ +- .....++=|-||.|.-..
T Consensus 249 ~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 249 QATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccc
Confidence 44333 23467999999999854444443 444444443 22 122467788899887654
No 292
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.09 E-value=5.5e-10 Score=74.88 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=40.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~ 81 (173)
...+++++|.+|+||||++|+|++..... .....+.|..... +.. . ..+.++||||+..
T Consensus 82 ~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~--~~~-~-~~~~i~DtpG~~~ 140 (141)
T cd01857 82 ENATIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQT--IFL-T-PTITLCDCPGLVF 140 (141)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEE--EEe-C-CCEEEEECCCcCC
Confidence 33489999999999999999999877542 2222334443332 333 2 3689999999864
No 293
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.07 E-value=2e-09 Score=78.13 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=82.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcc-ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGMEI 93 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~--~~~~~~~~~ 93 (173)
...++++++|.+++|||+|+|.++...... .+....+.|...+... -+..++++|.||+..+.- +..+-...+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhHh
Confidence 456899999999999999999998755432 2222444555444333 578999999999554321 111111122
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
......-.+..-.+++.++++-.+..-+...++++.+. ..|+.+|+||||+...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhhh
Confidence 22111112222345667788768888888888888775 2899999999999854
No 294
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.04 E-value=1.9e-09 Score=80.51 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=48.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~ 87 (173)
....+++++|.+|+||||++|+|++......+. .++.|...+... .+..+.++||||+..+....+
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcH
Confidence 456789999999999999999999987644443 345555554322 245689999999987654433
No 295
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.03 E-value=9.5e-10 Score=74.88 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=41.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
....+++++|.+|+||||++|+|++......+.. .+.|...... .. +..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~~--~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--KL--DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--Ee--cCCEEEEECCCC
Confidence 4678999999999999999999998765333322 3344444332 22 356899999996
No 296
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.03 E-value=6.2e-10 Score=78.27 Aligned_cols=58 Identities=29% Similarity=0.291 Sum_probs=39.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccc------c-CCCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKS------R-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
...+++++|.+|+|||||+|+|++...... . ...++.|........ +..+.++||||+
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 457899999999999999999998654221 1 122344444433332 236799999996
No 297
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.2e-09 Score=84.77 Aligned_cols=129 Identities=19% Similarity=0.143 Sum_probs=86.7
Q ss_pred CCcccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC-CCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 043441 8 DDWELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (173)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~ 86 (173)
..+..+...+++..+++|||+|.||||||.+|+...--.... ...+.|. ...+.+++.+..+|. +
T Consensus 58 mvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D----- 123 (1077)
T COG5192 58 MVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D----- 123 (1077)
T ss_pred cccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H-----
Confidence 345556677888899999999999999999998643110111 1111222 111667899999993 2
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhc
Q 043441 87 EFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLG 162 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 162 (173)
..++...++.. |.++++++.+=.+..+...+++.+... |. ..++-|+||.|+.... .++...-+
T Consensus 124 ---l~~miDvaKIa----DLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~~KK 187 (1077)
T COG5192 124 ---LHQMIDVAKIA----DLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRSIKK 187 (1077)
T ss_pred ---HHHHHhHHHhh----heeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHHHHH
Confidence 33566555544 899999999767777777777766665 32 6799999999988653 34444333
No 298
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=1.8e-09 Score=79.28 Aligned_cols=80 Identities=16% Similarity=0.080 Sum_probs=49.5
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCC
Q 043441 70 VVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDE 149 (173)
Q Consensus 70 ~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~ 149 (173)
.+.++||||..+.... ......+.+.+.... ++++++++|+....+..+.....++..........|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 6899999997764221 223334444443322 7899999999755555554444333321111123799999999999
Q ss_pred CCC
Q 043441 150 LED 152 (173)
Q Consensus 150 ~~~ 152 (173)
+..
T Consensus 175 ~~~ 177 (253)
T PRK13768 175 LSE 177 (253)
T ss_pred cCc
Confidence 876
No 299
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.6e-09 Score=81.64 Aligned_cols=130 Identities=18% Similarity=0.257 Sum_probs=89.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC-------------CCCccceeeEEEEEEeeCC---ceEEEEeCCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA-------------SSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLF 80 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~---~~~~v~DtpG~~ 80 (173)
++.+++.++.---.|||||...|+....+.... ...+.|...+...+.+ ++ ..+.+|||||..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-EcCCceEEEeecCCCcc
Confidence 677899999999999999999986533211110 1236677666666666 44 678999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHH
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDY 160 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~ 160 (173)
++..+-. ..+..++++|+++|+........ .-.+...|... ..++.|+||.|+...+.+..+..
T Consensus 137 DFs~EVs-----------Rslaac~G~lLvVDA~qGvqAQT---~anf~lAfe~~--L~iIpVlNKIDlp~adpe~V~~q 200 (650)
T KOG0462|consen 137 DFSGEVS-----------RSLAACDGALLVVDASQGVQAQT---VANFYLAFEAG--LAIIPVLNKIDLPSADPERVENQ 200 (650)
T ss_pred cccceeh-----------ehhhhcCceEEEEEcCcCchHHH---HHHHHHHHHcC--CeEEEeeeccCCCCCCHHHHHHH
Confidence 8754322 34445699999999985554443 33344444433 67999999999998866555555
Q ss_pred hcc
Q 043441 161 LGR 163 (173)
Q Consensus 161 ~~~ 163 (173)
+.+
T Consensus 201 ~~~ 203 (650)
T KOG0462|consen 201 LFE 203 (650)
T ss_pred HHH
Confidence 444
No 300
>PRK12288 GTPase RsgA; Reviewed
Probab=99.01 E-value=2.3e-09 Score=81.86 Aligned_cols=61 Identities=30% Similarity=0.469 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----c--cceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
..++++|++|+|||||||+|++......+.... + .|+....+... . ...++||||+.+...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~--~~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--H--GGDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--C--CCEEEECCCCCcccC
Confidence 458999999999999999999877655443322 1 23344333332 2 235999999998765
No 301
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.00 E-value=7.5e-09 Score=80.02 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=88.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCC-ccccC-------------CCCccceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRA-FKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
.+.++|+++.-.-.|||||+..|+...- |.... ...+.|...+.-.+.+ ++.++.++||||.-++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADF 81 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADF 81 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCc
Confidence 3457899999999999999999986432 21110 1236677777777777 8899999999999987
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
...-+ ..+...|++++++|+.+..-+..+..++...+. . .+.++|+||.|+...+.
T Consensus 82 GGEVE-----------Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~---g--L~PIVVvNKiDrp~Arp 137 (603)
T COG1217 82 GGEVE-----------RVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL---G--LKPIVVINKIDRPDARP 137 (603)
T ss_pred cchhh-----------hhhhhcceEEEEEEcccCCCCchhhhHHHHHHc---C--CCcEEEEeCCCCCCCCH
Confidence 54333 223356999999999877777777775444443 2 67899999999998753
No 302
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.00 E-value=1.3e-09 Score=69.85 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=68.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
+++++||+.|+||||+.++|.|....-. +-+.+++ +.. ..|||||-.-. .+...+.+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk-----------KTQAve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK-----------KTQAVEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc-----------ccceeec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 5899999999999999999998653111 1122333 221 27999996631 3345555666
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++++++++-.+++.-+.-... +.. ....+++-|+||.|+.++
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~----f~~----~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPG----FLD----IGVKKVIGVVTKADLAED 105 (148)
T ss_pred HhhccceeeeeecccCccccCCcc----ccc----ccccceEEEEecccccch
Confidence 777899999988887442222211 112 233569999999999954
No 303
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.00 E-value=2.5e-09 Score=79.00 Aligned_cols=65 Identities=26% Similarity=0.311 Sum_probs=42.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCC----CCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
.+.+.+++|++|+|||||+|+|.+......+.. ..+..+......+.+ .....++|||||.+...
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccCc
Confidence 456899999999999999999997544333311 122222222233333 23457999999998764
No 304
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.99 E-value=3.4e-09 Score=78.79 Aligned_cols=64 Identities=27% Similarity=0.335 Sum_probs=45.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~ 85 (173)
....+++++|.+|+||||++|+|.+......+. .++.|...+... . +..+.++||||+..+...
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~--~--~~~~~l~DtPG~~~~~~~ 179 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIK--L--SDGLELLDTPGILWPKFE 179 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEE--e--CCCEEEEECCCcccCCCC
Confidence 456789999999999999999999877544432 344555544333 2 346899999999765443
No 305
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3e-10 Score=75.68 Aligned_cols=123 Identities=13% Similarity=-0.018 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee--------CCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------DGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
.+.+.+|.+|+|||+++-..+....-..-.+..+..-..+...+... ....+++|||+| .+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-----------QE 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-----------QE 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc-----------HH
Confidence 46788999999999999877765522111222222211111111110 123689999999 44
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
++++....+++++-++++++|.++.-+-. ...|+..++...-- -..-+++..||+|+.+.+.
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~R~ 141 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQRV 141 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhhhh
Confidence 77888888999999999999998554433 25666666553221 2256889999999887653
No 306
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.97 E-value=1.2e-08 Score=80.63 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC-CCCccceeeEEE-----------------EEE-------------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTCEMQ-----------------RTV------------- 64 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~~-----------------~~~------------- 64 (173)
..+..+|.++|.-.+|||||+.+|++........ ...+.|....+. ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3566889999999999999999999854311110 001111111000 000
Q ss_pred --eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-CCHHHHHHHHHHHHHHcccccceEE
Q 043441 65 --LKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-FPQEEEAALHSWQTLFGKKVFDYMI 141 (173)
Q Consensus 65 --~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ 141 (173)
......+.++||||.. .+.+.+......+|.+++|+++.+. ........+. +.+.++- .+++
T Consensus 111 ~~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEE
Confidence 0012478999999953 2333333445577999999999853 2333233332 2333332 5789
Q ss_pred EEEeCCCCCCC
Q 043441 142 VVFTGGDELED 152 (173)
Q Consensus 142 iv~tk~D~~~~ 152 (173)
+++||+|+.+.
T Consensus 176 VvlNKiDlv~~ 186 (460)
T PTZ00327 176 ILQNKIDLVKE 186 (460)
T ss_pred EEEecccccCH
Confidence 99999998853
No 307
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.97 E-value=2.7e-09 Score=73.83 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=41.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~ 80 (173)
.+...+++++|.+|+||||++|.|++....... ...+.|...... .. . ..+.++||||+.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~--~~-~-~~~~~iDtpG~~ 171 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWI--KI-S-PGIYLLDTPGIL 171 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEE--Ee-c-CCEEEEECCCCC
Confidence 345578999999999999999999987643222 223344444333 33 2 568999999974
No 308
>PRK12289 GTPase RsgA; Reviewed
Probab=98.96 E-value=1.5e-09 Score=82.90 Aligned_cols=61 Identities=28% Similarity=0.372 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----c--cceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
..++++|++|+|||||||+|++......+..+. + .|+..... ..+.+ ..++||||+.....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~l 239 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPDL 239 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCcccccc
Confidence 468999999999999999999876544442221 1 23333333 22122 37999999998765
No 309
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=80.43 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=50.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~ 86 (173)
....+++++|.+++||||+||+|+++.....+ ..++.|...++... ...+.++||||+.......
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKL----DDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEc----CCCeEEecCCCcCCCCccc
Confidence 34578999999999999999999998874444 34467777766654 3458999999999876544
No 310
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.94 E-value=5.5e-09 Score=74.98 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=70.0
Q ss_pred cCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 12 LTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
+....+..-|++++|-+.+|||||+..++.... ..++....|..+-...+.+ ++.++++.|.||+.+..+..+-.++
T Consensus 55 FeV~KsGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGR 131 (364)
T KOG1486|consen 55 FEVLKSGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGR 131 (364)
T ss_pred eeeeccCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCc
Confidence 334455678999999999999999999998653 2223333444444445555 8899999999999987766655555
Q ss_pred HHHHHHHhccCCceEEEEEeecC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
+.. ...+.+|.++.|+|++
T Consensus 132 Qvi----avArtaDlilMvLDat 150 (364)
T KOG1486|consen 132 QVI----AVARTADLILMVLDAT 150 (364)
T ss_pred eEE----EEeecccEEEEEecCC
Confidence 444 4566789999999997
No 311
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.94 E-value=1.2e-09 Score=77.03 Aligned_cols=73 Identities=21% Similarity=0.087 Sum_probs=45.1
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 69 QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 69 ~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
..+++|||||.... ......++.++.... .++.+++|++++.. .++...+....+.+ ...-+++||.|
T Consensus 84 ~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~-----~~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAF-----GIDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred CCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhcc-----cCceEEEEeec
Confidence 46999999998853 244455666555544 56778889999722 22323333333332 34578899999
Q ss_pred CCCCC
Q 043441 149 ELEDN 153 (173)
Q Consensus 149 ~~~~~ 153 (173)
+...-
T Consensus 152 et~~~ 156 (196)
T PF00448_consen 152 ETARL 156 (196)
T ss_dssp SSSTT
T ss_pred CCCCc
Confidence 97653
No 312
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.92 E-value=2.9e-09 Score=77.79 Aligned_cols=61 Identities=30% Similarity=0.347 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC----Cc--cceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
...++++|++|+|||||+|+|++......+... .+ .|+....... . ...++||||+.....
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l 186 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGL 186 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCC
Confidence 368999999999999999999986654433221 11 3444444333 2 248999999998653
No 313
>PRK00098 GTPase RsgA; Reviewed
Probab=98.91 E-value=9.5e-09 Score=77.17 Aligned_cols=61 Identities=31% Similarity=0.399 Sum_probs=41.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----c--cceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
.+..++++|++|+|||||+|+|++......+.... + .|+..+.. .. .....++||||+...
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~--~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DL--PGGGLLIDTPGFSSF 229 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--Ec--CCCcEEEECCCcCcc
Confidence 35689999999999999999999876554443221 1 23322222 22 223589999999964
No 314
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.89 E-value=8.2e-08 Score=74.91 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=72.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh------CCCCccccCCC-C----------ccceeeEEEEEEe--------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL------GRRAFKSRASS-S----------GVTSTCEMQRTVL-------------- 65 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~~-~----------~~t~~~~~~~~~~-------------- 65 (173)
.++..++++|++|+||||++..|. |..+..-...+ . +............
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346789999999999999998886 32221100000 0 0001111111100
Q ss_pred --eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEE
Q 043441 66 --KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVV 143 (173)
Q Consensus 66 --~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv 143 (173)
..+..++++||||... ..+.+..++....... .++.+++|+|+... +......+.+.+.. .+..++
T Consensus 178 ~~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~~--~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~I 245 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEAI--QPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVI 245 (429)
T ss_pred HHhCCCCEEEEECCCCCc---chHHHHHHHHHHhhhc--CCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEE
Confidence 0145789999999764 3345666666665433 57889999998622 22333334443321 568899
Q ss_pred EeCCCCCCC
Q 043441 144 FTGGDELED 152 (173)
Q Consensus 144 ~tk~D~~~~ 152 (173)
+||.|.-..
T Consensus 246 lTKlD~~ar 254 (429)
T TIGR01425 246 ITKLDGHAK 254 (429)
T ss_pred EECccCCCC
Confidence 999998643
No 315
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.88 E-value=1.8e-08 Score=77.23 Aligned_cols=122 Identities=21% Similarity=0.237 Sum_probs=74.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc-cceee-EEEEE----------------------------EeeC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTC-EMQRT----------------------------VLKD 67 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~-~~~~~----------------------------~~~~ 67 (173)
+...++||||+|+||||.+-.|........+....+ .|+++ +.... .+ .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 489999999999999999988876543222222111 11111 00000 11 3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+..++++||.|.... ......++...+... +..+ ..++++++ . ...-++.+.+.|+.- ..--+++||.
T Consensus 281 ~~d~ILVDTaGrs~~---D~~~i~el~~~~~~~-~~i~-~~Lvlsat-~----K~~dlkei~~~f~~~--~i~~~I~TKl 348 (407)
T COG1419 281 DCDVILVDTAGRSQY---DKEKIEELKELIDVS-HSIE-VYLVLSAT-T----KYEDLKEIIKQFSLF--PIDGLIFTKL 348 (407)
T ss_pred cCCEEEEeCCCCCcc---CHHHHHHHHHHHhcc-ccce-EEEEEecC-c----chHHHHHHHHHhccC--CcceeEEEcc
Confidence 357999999998853 244555666666555 3444 46677776 2 234455556665543 5567889999
Q ss_pred CCCCC
Q 043441 148 DELED 152 (173)
Q Consensus 148 D~~~~ 152 (173)
|+-..
T Consensus 349 DET~s 353 (407)
T COG1419 349 DETTS 353 (407)
T ss_pred cccCc
Confidence 98864
No 316
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.88 E-value=1.3e-08 Score=76.02 Aligned_cols=61 Identities=34% Similarity=0.435 Sum_probs=41.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC----Cc--cceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~ 83 (173)
..+++++|++|+|||||+|.|++......+... .+ .|..... +.. . ....++||||+.+..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~-~-~~~~liDtPG~~~~~ 227 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL-P-GGGLLIDTPGFREFG 227 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc-C-CCCEEEECCCCCccC
Confidence 378999999999999999999997765544222 11 2333322 322 2 234799999997643
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.85 E-value=1.3e-08 Score=79.16 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=68.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc-------------------cceeeEEEE-----------EEee
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSG-------------------VTSTCEMQR-----------TVLK 66 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-------------------~t~~~~~~~-----------~~~~ 66 (173)
+.+.+++++|++|+||||++..|.+......+....+ ......... ...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l- 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL- 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence 5678999999999999999998876421111100000 000000000 011
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeC
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
.+...+++||+|..... ..+..++... .. ....+-.++|++++.. ...++.+...|..- ..--+++||
T Consensus 268 ~~~d~VLIDTaGrsqrd---~~~~~~l~~l-~~-~~~~~~~~LVl~at~~-----~~~~~~~~~~f~~~--~~~~~I~TK 335 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRD---QMLAEQIAML-SQ-CGTQVKHLLLLNATSS-----GDTLDEVISAYQGH--GIHGCIITK 335 (420)
T ss_pred cCCCEEEecCCCCCcch---HHHHHHHHHH-hc-cCCCceEEEEEcCCCC-----HHHHHHHHHHhcCC--CCCEEEEEe
Confidence 34568999999988532 2233333332 11 2234567788888722 22333444444332 567789999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
.|+-..
T Consensus 336 lDEt~~ 341 (420)
T PRK14721 336 VDEAAS 341 (420)
T ss_pred eeCCCC
Confidence 999764
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.85 E-value=2.2e-08 Score=76.91 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=68.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-ccce------------------eeEEEEE-----------Eee
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS-GVTS------------------TCEMQRT-----------VLK 66 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~------------------~~~~~~~-----------~~~ 66 (173)
.....++++|++|+||||++..|........+.... -.+. ....... .+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 457899999999999999999987542211110000 0000 0001111 11
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc---ccceEEEE
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK---VFDYMIVV 143 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~iv 143 (173)
.+..+++|||||..... ....+++. .+.. ...+.-.++|++++.... .-.+.++.+....+.. .....-++
T Consensus 214 ~~~DlVLIDTaG~~~~d---~~l~e~La-~L~~-~~~~~~~lLVLsAts~~~-~l~evi~~f~~~~~~p~~~~~~~~~~I 287 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRD---RTVSDQIA-MLHG-ADTPVQRLLLLNATSHGD-TLNEVVQAYRSAAGQPKAALPDLAGCI 287 (374)
T ss_pred cCCCEEEEcCCCCCccc---HHHHHHHH-HHhc-cCCCCeEEEEecCccChH-HHHHHHHHHHHhhcccccccCCCCEEE
Confidence 34578999999988532 22333332 2222 223445678888873322 2223444444432211 01235688
Q ss_pred EeCCCCCCCC
Q 043441 144 FTGGDELEDN 153 (173)
Q Consensus 144 ~tk~D~~~~~ 153 (173)
+||.|+-..-
T Consensus 288 ~TKlDEt~~~ 297 (374)
T PRK14722 288 LTKLDEASNL 297 (374)
T ss_pred EeccccCCCc
Confidence 9999997643
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=4.8e-08 Score=68.02 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEE--EEEeeCCceEEEEeCCCCCCCCCCcHHH----
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDGQVVNVIDTPGLFDFSAGSEFV---- 89 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~v~DtpG~~~~~~~~~~~---- 89 (173)
-.++..++++|++|+|||||++.|.|...+..+............. .... .....++.+.|.+.....-.+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL-RRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH-hhcEEEEecCCccCCCCCHHHheeecC
Confidence 3577899999999999999999999976543332111111000000 0001 12233445555554321111111
Q ss_pred ---HHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHH-HHHHHHHcccccceEEEEEeCC
Q 043441 90 ---GMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAAL-HSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
.++....+.....++..+++--+.. .++......+ +.+.+.... ....+++++|.
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~-~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~ 160 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTS-ALDPITRREVRALLKSLQAQ--LGITVVLVTHD 160 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcc-cCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCC
Confidence 2334445556777788766544444 7777754443 444443221 13577888874
No 320
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.84 E-value=3.1e-09 Score=77.19 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=36.5
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHHhcc-CCceEEEEEeecCCCCCHHHHHHHHHHHHHHc-ccccceEEEEEeCC
Q 043441 70 VVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAK-DGIHAVLVGFSVRSRFPQEEEAALHSWQTLFG-KKVFDYMIVVFTGG 147 (173)
Q Consensus 70 ~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~iv~tk~ 147 (173)
.+.++||||+.+. -.........+.... ...-++++++|+. .+..-....-..+....- -+...|.+.|+||+
T Consensus 92 ~y~l~DtPGQiEl----f~~~~~~~~i~~~L~~~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIEL----FTHSDSGRKIVERLQKNGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHH----HHHSHHHHHHHHTSSS----EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEE----EEechhHHHHHHHHhhhcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 6899999998753 112222223333322 3345788889987 554433222222222111 12338999999999
Q ss_pred CCCCC
Q 043441 148 DELED 152 (173)
Q Consensus 148 D~~~~ 152 (173)
|++..
T Consensus 167 Dl~~~ 171 (238)
T PF03029_consen 167 DLLSK 171 (238)
T ss_dssp GGS-H
T ss_pred Ccccc
Confidence 99974
No 321
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.84 E-value=1.3e-08 Score=78.31 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=40.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCcc----ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
+..++++|.+|+|||||+|+|++..... .....++.|..... +.. .....++||||+...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~--~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPL--DDGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEe--CCCCEEEECCCCCCh
Confidence 4689999999999999999999854211 22233344444332 322 344679999999875
No 322
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.1e-08 Score=66.62 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=75.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+++++|--+||||||++.|-.... +.-.+ |.-........ .+..+..+|.-|.. +.++.+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvP--TlHPTSE~l~I-g~m~ftt~DLGGH~-----------qArr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVP--TLHPTSEELSI-GGMTFTTFDLGGHL-----------QARRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc---cccCC--CcCCChHHhee-cCceEEEEccccHH-----------HHHHHH
Confidence 346899999999999999999966542 11111 21111122333 78999999988854 455566
Q ss_pred HhccCCceEEEEEeecCCCCC-HHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFP-QEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.++..+|++++.+|+-+.-. .+.+..++.+...- .-.+.|++|+.||+|....
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCCc
Confidence 678888999999999963221 11222222222220 0145899999999999876
No 323
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.83 E-value=6.1e-08 Score=73.28 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=69.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCC-C----------ccceeeEEEEEE---------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR------ASS-S----------GVTSTCEMQRTV--------------- 64 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~------~~~-~----------~~t~~~~~~~~~--------------- 64 (173)
.++..++++|++|+||||++..|.+.-..... ... . ............
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888653211110 000 0 000001111100
Q ss_pred -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh----ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce
Q 043441 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL----AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY 139 (173)
Q Consensus 65 -~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (173)
...+..++++||||..... ..+..++..+... ....++..++|++++.. .+.....+...+.. ..
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhC-----CC
Confidence 0133478999999987543 3333444444332 12356788999999832 22222222222221 56
Q ss_pred EEEEEeCCCCCCC
Q 043441 140 MIVVFTGGDELED 152 (173)
Q Consensus 140 ~~iv~tk~D~~~~ 152 (173)
..+++||.|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 7899999997643
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.81 E-value=2.3e-08 Score=76.84 Aligned_cols=122 Identities=21% Similarity=0.148 Sum_probs=68.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccC--------CCC----------ccceeeEEEEEE-----------ee--
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRA--------SSS----------GVTSTCEMQRTV-----------LK-- 66 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------~~~----------~~t~~~~~~~~~-----------~~-- 66 (173)
.+.+++++|++|+||||++..|...-. ..+. ... ............ ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 457899999999999999999864211 0000 000 000000000000 00
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeC
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
.+..+++|||||.... ......++.+.+... .++.+++|++++ .-....... .+.|.. ...--+++||
T Consensus 319 ~~~DvVLIDTaGRs~k---d~~lm~EL~~~lk~~--~PdevlLVLsAT-tk~~d~~~i----~~~F~~--~~idglI~TK 386 (436)
T PRK11889 319 ARVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEI----ITNFKD--IHIDGIVFTK 386 (436)
T ss_pred cCCCEEEEeCccccCc---CHHHHHHHHHHHhhc--CCCeEEEEECCc-cChHHHHHH----HHHhcC--CCCCEEEEEc
Confidence 1347899999998652 234455566555543 456778888875 222222333 333333 2567799999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
.|.-..
T Consensus 387 LDET~k 392 (436)
T PRK11889 387 FDETAS 392 (436)
T ss_pred ccCCCC
Confidence 998764
No 325
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.80 E-value=4.1e-08 Score=81.16 Aligned_cols=124 Identities=20% Similarity=0.164 Sum_probs=68.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-cccee------------------eEEEEE-----------EeeC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS-GVTST------------------CEMQRT-----------VLKD 67 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~------------------~~~~~~-----------~~~~ 67 (173)
.+..++++|++|+||||++..|.+......+.... -.+.+ ...... .. .
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~ 262 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-G 262 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-c
Confidence 45789999999999999999998754221111000 00000 000000 11 3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc-ccceEEEEEeC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK-VFDYMIVVFTG 146 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iv~tk 146 (173)
+..+++|||||..... ....+++..... ...++-.++|++++.. ...++.+.+.|... .....-+|+||
T Consensus 263 ~~D~VLIDTAGRs~~d---~~l~eel~~l~~--~~~p~e~~LVLsAt~~-----~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 263 DKHLVLIDTVGMSQRD---RNVSEQIAMLCG--VGRPVRRLLLLNAASH-----GDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred CCCEEEEeCCCCCccC---HHHHHHHHHHhc--cCCCCeEEEEECCCCc-----HHHHHHHHHHHhhcccCCCCEEEEec
Confidence 3478999999977532 334444443332 2345667889988721 22333333333321 01345688999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
.|.-..
T Consensus 333 LDEt~~ 338 (767)
T PRK14723 333 LDEATH 338 (767)
T ss_pred cCCCCC
Confidence 998754
No 326
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.2e-08 Score=85.78 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=83.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCcccc---C--CCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH----HH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSR---A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF----VG 90 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~---~--~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~----~~ 90 (173)
+=.+++|++|+||||++..- |....... . .....|..|.+ .-+...++|||.|-...+.+..+ ..
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-----wf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-----WFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-----ccccceEEEcCCcceecccCcchhhHHHH
Confidence 34689999999999988552 22111111 0 11112444432 23567789999998876642222 22
Q ss_pred HHHHHHHHh--ccCCceEEEEEeecCCCCCHHH----------HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHH
Q 043441 91 MEIVKCIGL--AKDGIHAVLVGFSVRSRFPQEE----------EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLE 158 (173)
Q Consensus 91 ~~~~~~~~~--~~~~~~~ii~v~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~ 158 (173)
..+...++. ..+..++||+.+++.+-.+... +..++++.+.++.. .|+++++||.|++.+ .+
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~G----F~ 273 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLPG----FE 273 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEeccccccc----HH
Confidence 233344444 4566799999999863333222 23456666666655 899999999999975 88
Q ss_pred HHhcccCC
Q 043441 159 DYLGRECP 166 (173)
Q Consensus 159 ~~~~~~~~ 166 (173)
+|+.....
T Consensus 274 efF~~l~~ 281 (1188)
T COG3523 274 EFFGSLNK 281 (1188)
T ss_pred HHHhccCH
Confidence 88877443
No 327
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.1e-08 Score=69.24 Aligned_cols=121 Identities=12% Similarity=-0.042 Sum_probs=76.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCcc-ccC--CCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFK-SRA--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~--~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....++++|.-+||||||+-++-....-. .+. +....|......++.. .+..+.+||--|.. ..+
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe-----------~lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQE-----------SLR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChH-----------HHH
Confidence 45679999999999999997753211100 122 2223344444555666 57789999988833 566
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHH-HHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQT-LFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+.++.+|..+|++|+++|++++-.-. ....++.+.+ ..- ...|++++.||-|+-..
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhh
Confidence 66677888999999999998422111 1222222221 111 22699999999997754
No 328
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.79 E-value=3.5e-08 Score=69.51 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=71.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHH------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV------ 89 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~------ 89 (173)
-..+..++++||+|||||||+.+|-+...+.+|........................|+.-..+++...-.+.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 35778999999999999999999999887666644332211100000000011122333333333321111110
Q ss_pred ------------------------------------HHHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHH
Q 043441 90 ------------------------------------GMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLF 132 (173)
Q Consensus 90 ------------------------------------~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~ 132 (173)
+++-.-++....-+++.++|--+.+ .++++. .+.++.++++.
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTS-ALDPElv~EVL~vm~~LA 183 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTS-ALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcc-cCCHHHHHHHHHHHHHHH
Confidence 3333344455666788777655555 777774 56667777764
Q ss_pred cccccceEEEEEeC
Q 043441 133 GKKVFDYMIVVFTG 146 (173)
Q Consensus 133 ~~~~~~~~~iv~tk 146 (173)
.. .-+++++||
T Consensus 184 ~e---GmTMivVTH 194 (240)
T COG1126 184 EE---GMTMIIVTH 194 (240)
T ss_pred Hc---CCeEEEEec
Confidence 43 358899999
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.79 E-value=3.4e-08 Score=67.21 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=38.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
...+++++|.+|+||||++|.+.+........ ..+.|...+ ... .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~--~~~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQ--LVK--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeE--EEE--cCCCEEEEECcCC
Confidence 46788999999999999999999765432222 222333222 222 2347899999995
No 330
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=2.1e-07 Score=64.51 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=66.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHH-----H
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV-----G 90 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~-----~ 90 (173)
-.++..++++|++|+|||||++.|.|......+........... ..... .....++...|.+.....-.+.+ .
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~-~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEV-KRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc-chHhh-hccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 35778999999999999999999999764333321111100000 00011 12233444445554321111111 2
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHHHHH-HHHHHHHHHcccccceEEEEEeCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEA-ALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
.+....+.....+++.+++--+.. .++..... .++.+.+. ..+ ..+++++||.
T Consensus 101 ~qrv~laral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~-~~~--g~tiii~th~ 154 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTS-GLDPESRREFWELLREL-KKE--GKTILLSSHI 154 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHH-HHC--CCEEEEECCC
Confidence 233345555677888766544444 77777544 44444443 222 3577888874
No 331
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.9e-08 Score=74.47 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=63.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-----------C------CceEEEEeCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------D------GQVVNVIDTPGLFDF 82 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~------~~~~~v~DtpG~~~~ 82 (173)
.++.+||.+++|||||+|+++.... ....++-.|.+........+ + ...+.++|.+|+...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6799999999999999999998764 22233334443333222111 1 135889999999998
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
.+.-+-++.++.. ..+.+|+|+-|++..
T Consensus 81 As~GeGLGNkFL~----~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLD----NIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHH----hhhhcCeEEEEEEec
Confidence 8887888888874 455669999999885
No 332
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.75 E-value=8.3e-08 Score=71.91 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++++|++||||||+++.|+|.....+|
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G 60 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 456788999999999999999999997754444
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.74 E-value=2.6e-07 Score=64.18 Aligned_cols=108 Identities=14% Similarity=0.054 Sum_probs=61.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceE-EEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVV-NVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
-+++..++++|++|+|||||++.|.|......+.... .+..+ .+.+.+.+ ..=.++..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~--------------~g~~i~~~~q~~~L-------SgGq~qrv 80 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW--------------DGITPVYKPQYIDL-------SGGELQRV 80 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEE--------------CCEEEEEEcccCCC-------CHHHHHHH
Confidence 3678899999999999999999999976433332111 11111 11111111 11233445
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHH-HHHHHHHHHHcccccceEEEEEeCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEE-AALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
..+.....+++.+++--+.+ .++.... ...+.+.+..... ...+++++|.
T Consensus 81 ~laral~~~p~lllLDEPts-~LD~~~~~~l~~~l~~~~~~~--~~tiiivsH~ 131 (177)
T cd03222 81 AIAAALLRNATFYLFDEPSA-YLDIEQRLNAARAIRRLSEEG--KKTALVVEHD 131 (177)
T ss_pred HHHHHHhcCCCEEEEECCcc-cCCHHHHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 55566777888766544444 7776654 4444454442211 2578888884
No 334
>PRK13796 GTPase YqeH; Provisional
Probab=98.72 E-value=3.3e-08 Score=76.24 Aligned_cols=60 Identities=28% Similarity=0.235 Sum_probs=39.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCC----ccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRA----FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
...++++|.+|+|||||||+|++... .......++.|...... .+ .....++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~--~l--~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI--PL--DDGSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE--Ec--CCCcEEEECCCcccc
Confidence 46899999999999999999986431 11112233445444333 22 223579999999753
No 335
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.72 E-value=1e-07 Score=72.91 Aligned_cols=89 Identities=15% Similarity=0.034 Sum_probs=59.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeEEEEEEeeC----------------CceEEEEeCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDF 82 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~v~DtpG~~~~ 82 (173)
..+.++|.+++|||||+|+|++... ... .++..|.......+..++ ...+.++|.||+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a--~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA--NPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccC--CCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 6789999999999999999998764 211 122233333332232212 136899999999987
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
.+....++.++...++ .+|+++.|++..
T Consensus 81 As~g~Glgn~fL~~ir----~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIR----EVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHH----hCCEEEEEEeCC
Confidence 6555556666665544 459999999884
No 336
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.71 E-value=2.1e-07 Score=63.85 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=61.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
-.++..++++|++|+|||||++.|.|......+.......................++.+ +.. =..+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---LS~-------G~~qrl~ 92 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---LSV-------GERQMVE 92 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---cCH-------HHHHHHH
Confidence 467789999999999999999999997654333211111000000000000111122222 111 1234444
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHH-HHHHHHHHcccccceEEEEEeCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAA-LHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
.+.....+++.+++--+.+ .++...... .+.+.+. ... ..++|+.+|.
T Consensus 93 laral~~~p~illlDEP~~-~LD~~~~~~l~~~l~~~-~~~--~~tiii~sh~ 141 (163)
T cd03216 93 IARALARNARLLILDEPTA-ALTPAEVERLFKVIRRL-RAQ--GVAVIFISHR 141 (163)
T ss_pred HHHHHhcCCCEEEEECCCc-CCCHHHHHHHHHHHHHH-HHC--CCEEEEEeCC
Confidence 5556677888766543433 777765444 3444444 221 4577777775
No 337
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.71 E-value=1.5e-07 Score=65.23 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=64.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH----HHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF----VGM 91 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~----~~~ 91 (173)
-.++..++++|++|+|||||++.|.|......+................. .....++..-|.+... .-.+. =..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~-tv~~~lLS~G~~ 102 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL-GDHVGYLPQDDELFSG-SIAENILSGGQR 102 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH-HhheEEECCCCccccC-cHHHHCcCHHHH
Confidence 35778999999999999999999999765444422111110000000000 1112223333333321 10010 122
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHHHHHH-HHHHHHHcccccceEEEEEeCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAAL-HSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+....+.....+++.+++--+.. .++......+ +.+.+. ... ..++++.||.
T Consensus 103 qrv~la~al~~~p~~lllDEPt~-~LD~~~~~~l~~~l~~~-~~~--~~tii~~sh~ 155 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNS-HLDVEGERALNQAIAAL-KAA--GATRIVIAHR 155 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc-ccCHHHHHHHHHHHHHH-HhC--CCEEEEEeCC
Confidence 33344555777888766544444 7777765444 444443 222 4577888874
No 338
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.70 E-value=1e-07 Score=74.03 Aligned_cols=124 Identities=19% Similarity=0.123 Sum_probs=67.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC--------C----------ccceeeEEEEE----------EeeCCc
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS--------S----------GVTSTCEMQRT----------VLKDGQ 69 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~--------~----------~~t~~~~~~~~----------~~~~~~ 69 (173)
+...++++|++|+||||++..|........+... . ........... .. .+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~ 300 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGS 300 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCC
Confidence 3567999999999999999888642211011000 0 00000000000 00 245
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHHhcc-CCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 70 VVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAK-DGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 70 ~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
.+++|||||..... .....++..++.... ..++-.++|++++.. . ..+..+...|..- ..--+++||.|
T Consensus 301 D~VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~-~----~~~~~~~~~f~~~--~~~glIlTKLD 370 (432)
T PRK12724 301 ELILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSS-Y----HHTLTVLKAYESL--NYRRILLTKLD 370 (432)
T ss_pred CEEEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC-H----HHHHHHHHHhcCC--CCCEEEEEccc
Confidence 78999999987432 234445555554432 224567788888722 1 2223333444322 56789999999
Q ss_pred CCCC
Q 043441 149 ELED 152 (173)
Q Consensus 149 ~~~~ 152 (173)
.-..
T Consensus 371 Et~~ 374 (432)
T PRK12724 371 EADF 374 (432)
T ss_pred CCCC
Confidence 8754
No 339
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.70 E-value=1.1e-07 Score=76.39 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=29.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
-.++-+++|||.+|+|||||++.|.|......+.
T Consensus 26 ~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~ 59 (530)
T COG0488 26 LNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59 (530)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCe
Confidence 4678899999999999999999999988655554
No 340
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.69 E-value=1.6e-07 Score=69.56 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=46.3
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh----ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEE
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL----AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIV 142 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 142 (173)
.+..++++||||.... ...+..++..+... ....+|.+++|++++ . ..........+.+.. ...-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~-~~~~~~~~~~f~~~~-----~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-T-GQNALEQAKVFNEAV-----GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-C-CHHHHHHHHHHHhhC-----CCCEE
Confidence 3457899999998763 23344444444332 223478899999997 2 233333333333322 45789
Q ss_pred EEeCCCCCCC
Q 043441 143 VFTGGDELED 152 (173)
Q Consensus 143 v~tk~D~~~~ 152 (173)
++||.|.-..
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999998754
No 341
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.69 E-value=2.5e-07 Score=79.15 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=69.2
Q ss_pred CHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC-----------------CceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 31 GKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------------GQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 31 GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
+||||+.+|.+.+..... ..+.|.......+.... -..+.+|||||+...
T Consensus 473 ~KTtLLD~iR~t~v~~~E--aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F----------- 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKE--AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF----------- 539 (1049)
T ss_pred ccccHHHHHhCCCccccc--CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-----------
Confidence 399999999998874333 34455554444333311 113899999995531
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.......+..+|++++|+++++.+.......++.+... ..|+++++||+|+..
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 22222345678999999999877777776666655543 268999999999874
No 342
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.9e-07 Score=75.19 Aligned_cols=120 Identities=21% Similarity=0.237 Sum_probs=78.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC------C---------CccceeeEEEEEEee----CCceEEEEeC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS------S---------SGVTSTCEMQRTVLK----DGQVVNVIDT 76 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~---------~~~t~~~~~~~~~~~----~~~~~~v~Dt 76 (173)
+.....+.++|.=++|||+|+..|........... . .+.+........... +..-+.++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 45678899999999999999999987654322110 0 122222221111110 2235789999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
||..++. .+.. ..++-+|++++++|+.+...-+....++..-+ +. .++++|+||+|++-
T Consensus 205 PGHVnF~-------DE~t----a~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~--~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 205 PGHVNFS-------DETT----ASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NR--LPIVVVINKVDRLI 263 (971)
T ss_pred CCcccch-------HHHH----HHhhhcceEEEEEEcccCceeeHHHHHHHHHh---cc--CcEEEEEehhHHHH
Confidence 9998742 2232 44556699999999987777776666554443 23 78999999999883
No 343
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=5.8e-07 Score=64.73 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++-.+.++|++|+|||||+|.+.|......+
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456789999999999999999999997765555
No 344
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=1.7e-07 Score=64.83 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=64.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH----HHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF----VGM 91 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~----~~~ 91 (173)
-.++..++++|++|+|||||++.|.|......+................. .....++.+.|.+.+. .-.+. =.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~-t~~e~lLS~G~~ 102 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSG-TIRENILSGGQR 102 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccc-hHHHHhhCHHHH
Confidence 46788999999999999999999999765444422111100000000000 1112233334444321 11110 122
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHHHH-HHHHHHHHHcccccceEEEEEeCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEA-ALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
+....+.....+++.+++--+.. .++..... ..+.+.+. .. ..++++.||..
T Consensus 103 ~rl~la~al~~~p~llllDEP~~-gLD~~~~~~l~~~l~~~-~~---~~tii~~sh~~ 155 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATS-ALDPETEALILEALRAL-AK---GKTVIVIAHRL 155 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCc-CCCHHHHHHHHHHHHHh-cC---CCEEEEEecCH
Confidence 33344455677888766544444 77777644 34444443 22 35777777753
No 345
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.67 E-value=2.6e-07 Score=64.57 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=64.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEE-EEEeeCCceEEEEeCC---CCCCCCCCcHHH--
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDGQVVNVIDTP---GLFDFSAGSEFV-- 89 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~v~Dtp---G~~~~~~~~~~~-- 89 (173)
-.++..++++|++|+|||||++.|.|......+............. .... .....++.+-| ++.....-.+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI-RAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH-hCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 3567889999999999999999999976544442111110000000 0000 11122233322 233221111211
Q ss_pred -------HHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHH-HHHHHHHHcccccceEEEEEeCC
Q 043441 90 -------GMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAA-LHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 90 -------~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
.++....+.....+++.+++--+.+ .++...... .+.+.+. ... ..++++.+|.
T Consensus 102 ~~~LS~G~~qrl~la~al~~~p~llllDEP~~-~LD~~~~~~l~~~l~~~-~~~--~~tiii~sh~ 163 (182)
T cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTR-GVDVGAKAEIYRLIREL-ADA--GKAVLLISSE 163 (182)
T ss_pred HhhcCHHHHHHHHHHHHHccCCCEEEECCCCc-CCCHHHHHHHHHHHHHH-HHC--CCEEEEEeCC
Confidence 1133344555677888766543334 777775444 3444443 221 4577887775
No 346
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=4.5e-07 Score=71.97 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhC---CCC-----------cccc---------------CCCCccceeeEEEEE
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILG---RRA-----------FKSR---------------ASSSGVTSTCEMQRT 63 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~---~~~-----------~~~~---------------~~~~~~t~~~~~~~~ 63 (173)
+..+.+-..++++|-..+||||++..|+- ... ...| -+..++|.......+
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 34455778899999999999999977642 111 0000 012355666655556
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC-CCCCHH-----HHHHHHHHHHHHccccc
Q 043441 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR-SRFPQE-----EEAALHSWQTLFGKKVF 137 (173)
Q Consensus 64 ~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~-~~~~~~-----~~~~~~~l~~~~~~~~~ 137 (173)
+. ....++++|+||+.++ ..++. ....-+|+.++|+|++ +.++.. .-.-.-.+...++ .
T Consensus 251 es-~~~~~tliDaPGhkdF-------i~nmi----~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---i 315 (603)
T KOG0458|consen 251 ES-KSKIVTLIDAPGHKDF-------IPNMI----SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---I 315 (603)
T ss_pred ec-CceeEEEecCCCcccc-------chhhh----ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---c
Confidence 65 7789999999997764 12222 2334558889999985 122111 1112222333333 3
Q ss_pred ceEEEEEeCCCCCCCCcccHHHHhc
Q 043441 138 DYMIVVFTGGDELEDNEETLEDYLG 162 (173)
Q Consensus 138 ~~~~iv~tk~D~~~~~~~~~~~~~~ 162 (173)
.+.+|++||+|.+.=+...+++...
T Consensus 316 ~qlivaiNKmD~V~Wsq~RF~eIk~ 340 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQDRFEEIKN 340 (603)
T ss_pred ceEEEEeecccccCccHHHHHHHHH
Confidence 7899999999999876555555443
No 347
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=70.52 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=67.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC-------------C---ceEEEEeCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-------------G---QVVNVIDTPGL 79 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~---~~~~v~DtpG~ 79 (173)
......+.+||.+++|||||+|+|+..... ...++-.|.+.....+..+. + -.+.++|.+|+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 445679999999999999999999987753 22344455555554443311 1 25899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
....+.-+-++..+.+- .+.+|+|+-|+++.
T Consensus 95 vkGAs~G~GLGN~FLs~----iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSH----IRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHh----hhhccceeEEEEec
Confidence 99888888888777754 44558888888774
No 348
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.66 E-value=1.5e-07 Score=67.36 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=28.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.-+++..++++|++|||||||+|.+-+...+.++
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 3467789999999999999999999887765444
No 349
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=5.4e-07 Score=69.48 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=86.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.|+..|.--.|||||+.+++|..-- .......+.|.+..++.... ....+.++|.||..+ +.+.+-.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 4677888889999999999985421 12234567888888888887 566999999999774 3444445
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....|..++|+++.+.+.....+.+.-+ +.++. .+.++|+||+|..++
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iL-dllgi---~~giivltk~D~~d~ 118 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRVDE 118 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHH-HhcCC---CceEEEEeccccccH
Confidence 56678999999999778877765555444 34444 678999999999976
No 350
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.64 E-value=7.6e-07 Score=63.16 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++.+++|+|++|+|||||++.|.|......+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 467889999999999999999999997654444
No 351
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.64 E-value=1.7e-07 Score=74.27 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc-cceee------------------EEEE-----------EEeeC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTC------------------EMQR-----------TVLKD 67 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~------------------~~~~-----------~~~~~ 67 (173)
.+..++++|++|+||||++..|.+......+..... .+.+. .... ... .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L-~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL-R 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc-c
Confidence 457899999999999999999876432211110000 00000 0000 011 2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+...++|||+|..... .... +....+..... ++-.++|++++.. ...+..+...|... ...-+++||.
T Consensus 334 d~d~VLIDTaGr~~~d---~~~~-e~~~~l~~~~~-p~e~~LVLdAt~~-----~~~l~~i~~~f~~~--~~~g~IlTKl 401 (484)
T PRK06995 334 NKHIVLIDTIGMSQRD---RMVS-EQIAMLHGAGA-PVKRLLLLNATSH-----GDTLNEVVQAYRGP--GLAGCILTKL 401 (484)
T ss_pred CCCeEEeCCCCcChhh---HHHH-HHHHHHhccCC-CCeeEEEEeCCCc-----HHHHHHHHHHhccC--CCCEEEEeCC
Confidence 3468999999977521 1112 22222222221 3346778888622 13333334443332 4567889999
Q ss_pred CCCCC
Q 043441 148 DELED 152 (173)
Q Consensus 148 D~~~~ 152 (173)
|.-..
T Consensus 402 Det~~ 406 (484)
T PRK06995 402 DEAAS 406 (484)
T ss_pred CCccc
Confidence 98754
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.64 E-value=2.4e-07 Score=73.78 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+..++|+|++|+||||++..|..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988864
No 353
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.64 E-value=1.4e-07 Score=72.28 Aligned_cols=123 Identities=17% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC--------CCC----------ccceeeEEEEEE-----------e--
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA--------SSS----------GVTSTCEMQRTV-----------L-- 65 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------~~~----------~~t~~~~~~~~~-----------~-- 65 (173)
.++..++++|++|+||||++..|..... ..+. ... +........... .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4678899999999999999988753210 0000 000 000000000000 0
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEe
Q 043441 66 KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145 (173)
Q Consensus 66 ~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~t 145 (173)
..+..+++|||||.... ...+..++....... .++.+++|++++ ....+..+ +...|.. ...--+++|
T Consensus 283 ~~~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~~--~p~~~~LVLsag----~~~~d~~~-i~~~f~~--l~i~glI~T 350 (407)
T PRK12726 283 VNCVDHILIDTVGRNYL---AEESVSEISAYTDVV--HPDLTCFTFSSG----MKSADVMT-ILPKLAE--IPIDGFIIT 350 (407)
T ss_pred cCCCCEEEEECCCCCcc---CHHHHHHHHHHhhcc--CCceEEEECCCc----ccHHHHHH-HHHhcCc--CCCCEEEEE
Confidence 02357899999998752 244455555554433 456667777664 11222322 2222332 156778999
Q ss_pred CCCCCCC
Q 043441 146 GGDELED 152 (173)
Q Consensus 146 k~D~~~~ 152 (173)
|.|.-..
T Consensus 351 KLDET~~ 357 (407)
T PRK12726 351 KMDETTR 357 (407)
T ss_pred cccCCCC
Confidence 9998754
No 354
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.4e-07 Score=73.64 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=28.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.-+++..+++||++|+||||+++.|.|......|
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 3468889999999999999999999997764444
No 355
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.63 E-value=1.5e-07 Score=66.90 Aligned_cols=124 Identities=17% Similarity=0.213 Sum_probs=77.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-HH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK-CI 97 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~-~~ 97 (173)
.++|+++|.+|||||++=..+...... -.....+.|.+..-.+..+..+..+.+||.-|... ..+.... .-
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~-------fmen~~~~q~ 75 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE-------FMENYLSSQE 75 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhhhhheeehhccCCcHH-------HHHHHHhhcc
Confidence 478999999999999976665532211 12233456666655555553567889999988553 1222222 22
Q ss_pred HhccCCceEEEEEeecCCC-CCHHH---HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSR-FPQEE---EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...++..+++++++|+..+ +...- ...++.+... -....+.+++.|+|++..+
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~---SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN---SPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc---CCcceEEEEEeechhcccc
Confidence 2367788999999999632 22222 2333334333 2236889999999999764
No 356
>PTZ00099 rab6; Provisional
Probab=98.63 E-value=6.5e-07 Score=62.25 Aligned_cols=72 Identities=17% Similarity=0.026 Sum_probs=48.8
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
...+.+|||||... +......+++++|++|+|+|++++.+-.. ..++..+....+. ..|+++|.||
T Consensus 28 ~v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEEC
Confidence 35789999999653 33334456789999999999985433222 3455555443222 3688999999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
+|+...
T Consensus 95 ~DL~~~ 100 (176)
T PTZ00099 95 TDLGDL 100 (176)
T ss_pred cccccc
Confidence 998653
No 357
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.63 E-value=3.8e-07 Score=69.13 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=53.1
Q ss_pred EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC--------CCHHHHHHHHHHHHH
Q 043441 60 MQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR--------FPQEEEAALHSWQTL 131 (173)
Q Consensus 60 ~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~--------~~~~~~~~~~~l~~~ 131 (173)
...... ++..+.++|+.|... .++.+..++.++++++||++.++. ....-.+.++.+.++
T Consensus 153 ~~~f~~-~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i 220 (317)
T cd00066 153 ETKFTI-KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSI 220 (317)
T ss_pred EEEEEe-cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHH
Confidence 333444 567789999999653 223333567899999999999832 112234555555555
Q ss_pred Hccc--ccceEEEEEeCCCCCCC
Q 043441 132 FGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 132 ~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
+... ...|+++++||.|.+..
T Consensus 221 ~~~~~~~~~pill~~NK~D~f~~ 243 (317)
T cd00066 221 CNSRWFANTSIILFLNKKDLFEE 243 (317)
T ss_pred HhCccccCCCEEEEccChHHHHH
Confidence 5443 23699999999998754
No 358
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.63 E-value=1.2e-07 Score=74.36 Aligned_cols=123 Identities=22% Similarity=0.158 Sum_probs=65.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceee------------------EEEEE-----------EeeC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTC------------------EMQRT-----------VLKD 67 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~------------------~~~~~-----------~~~~ 67 (173)
+...++++|++|+||||++..|..... ...+....-.+.+. ..... .. .
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 356899999999999999987754321 11110000000000 00000 01 2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+..+++|||||.... ......++..++.... .....++|++++ .- ...++.+.+.|..- ..--+++||.
T Consensus 299 ~~DlVlIDt~G~~~~---d~~~~~~L~~ll~~~~-~~~~~~LVl~a~-~~----~~~l~~~~~~f~~~--~~~~vI~TKl 367 (424)
T PRK05703 299 DCDVILIDTAGRSQR---DKRLIEELKALIEFSG-EPIDVYLVLSAT-TK----YEDLKDIYKHFSRL--PLDGLIFTKL 367 (424)
T ss_pred CCCEEEEeCCCCCCC---CHHHHHHHHHHHhccC-CCCeEEEEEECC-CC----HHHHHHHHHHhCCC--CCCEEEEecc
Confidence 357899999998653 2333445555544222 234556777776 21 12233334444331 3346999999
Q ss_pred CCCCC
Q 043441 148 DELED 152 (173)
Q Consensus 148 D~~~~ 152 (173)
|+-..
T Consensus 368 Det~~ 372 (424)
T PRK05703 368 DETSS 372 (424)
T ss_pred ccccc
Confidence 99654
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=98.62 E-value=1.6e-07 Score=71.36 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=44.8
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+..++++||+|.... ...+..++....... .+|.+++|+++... +......+.+.+.. ..-.+++||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g--~d~~~~a~~f~~~~-----~~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVT--KPDLVIFVGDALAG--NDAVEQAREFNEAV-----GIDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHhh--CCceEEEeeccccc--hhHHHHHHHHHhcC-----CCCEEEEeee
Confidence 346899999998852 244455555554433 46788899998632 22222223333321 4578999999
Q ss_pred CCCCC
Q 043441 148 DELED 152 (173)
Q Consensus 148 D~~~~ 152 (173)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 98653
No 360
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.62 E-value=1.3e-06 Score=58.67 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC-ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
-.++..++++|++|+|||||++.|.|......+... + ++ ..+.++. .+.. =..+..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-------------~-~~~~~i~~~~--~lS~-------G~~~rv 79 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT-------------W-GSTVKIGYFE--QLSG-------GEKMRL 79 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE-------------E-CCeEEEEEEc--cCCH-------HHHHHH
Confidence 357789999999999999999999997643333111 1 11 1111111 1221 122334
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHH-HHHHHHHcccccceEEEEEeCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAAL-HSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
..+.....+++.+++--+.. .++......+ +.+++. ...+++.+|.
T Consensus 80 ~laral~~~p~illlDEP~~-~LD~~~~~~l~~~l~~~------~~til~~th~ 126 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTN-HLDLESIEALEEALKEY------PGTVILVSHD 126 (144)
T ss_pred HHHHHHhcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHc------CCEEEEEECC
Confidence 44556677888766544444 6766654443 344433 3477888875
No 361
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=8.4e-07 Score=63.07 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......|
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 56 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAG 56 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 457789999999999999999999997654444
No 362
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.61 E-value=1.8e-07 Score=75.63 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
+++.+++++|++||||||+++.|+|...+.+|.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 578899999999999999999999977655553
No 363
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.61 E-value=8.1e-07 Score=60.67 Aligned_cols=72 Identities=15% Similarity=0.007 Sum_probs=39.9
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHH-HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEI-VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
....+++||||+.++. .....+ ........-.++.+++++|+. .+...... .+.+.+. ...-=+|++||
T Consensus 86 ~~d~I~IEt~G~~~p~----~~~~~~~~~~~~~~~~~~d~vv~vvDa~-~~~~~~~~-~~~~~~Q----i~~ad~ivlnk 155 (158)
T cd03112 86 AFDRIVIETTGLADPG----PVAQTFFMDEELAERYLLDGVITLVDAK-HANQHLDQ-QTEAQSQ----IAFADRILLNK 155 (158)
T ss_pred CCCEEEEECCCcCCHH----HHHHHHhhchhhhcceeeccEEEEEEhh-HhHHHhhc-cHHHHHH----HHHCCEEEEec
Confidence 3467899999998642 222221 111223444678999999986 43332211 1222222 11335679999
Q ss_pred CCC
Q 043441 147 GDE 149 (173)
Q Consensus 147 ~D~ 149 (173)
+|+
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 995
No 364
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.61 E-value=4.9e-07 Score=64.81 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++++|++|||||||++.|.|......|
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 367789999999999999999999997644333
No 365
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=1.2e-06 Score=62.70 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 357789999999999999999999997654444
No 366
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.60 E-value=6.2e-07 Score=64.94 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|...+..|
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 55 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG 55 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 457789999999999999999999997654444
No 367
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=1.2e-06 Score=62.91 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357788999999999999999999997644333
No 368
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.60 E-value=2.3e-06 Score=58.93 Aligned_cols=115 Identities=12% Similarity=0.047 Sum_probs=61.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCC----------CCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD----------FSAG 85 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~----------~~~~ 85 (173)
-.++..++++|++|+|||||++.|+|......+......... ..++...|.+.. ....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~------------i~~~~q~~~~~~~tv~~nl~~~~~~~ 91 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGED------------LLFLPQRPYLPLGTLREQLIYPWDDV 91 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCce------------EEEECCCCccccccHHHHhhccCCCC
Confidence 357889999999999999999999997654444221111000 001111111110 0000
Q ss_pred cHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 86 SEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
...=.++....+.....+++.+++--+.+ .++......+..+...+ ...++++||..
T Consensus 92 LS~G~~~rv~laral~~~p~~lllDEPt~-~LD~~~~~~l~~~l~~~-----~~tiiivsh~~ 148 (166)
T cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATS-ALDEESEDRLYQLLKEL-----GITVISVGHRP 148 (166)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcc-ccCHHHHHHHHHHHHHh-----CCEEEEEeCCh
Confidence 11112334445556677888776654444 77766554443333222 35788888864
No 369
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.60 E-value=9.7e-07 Score=62.32 Aligned_cols=124 Identities=14% Similarity=0.011 Sum_probs=64.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC--CccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH-----
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR--AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF----- 88 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~----- 88 (173)
-.++..++|+|++|+|||||++.|.|.. ....+........... ... .....++.+.|.+.....-.+.
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~-~~~i~~~~q~~~~~~~~t~~~~i~~~~ 107 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSF-RKIIGYVPQDDILHPTLTVRETLMFAA 107 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hhh-hheEEEccCcccCCCCCcHHHHHHHHH
Confidence 4678899999999999999999999976 4333321111100000 011 1222334444544432111111
Q ss_pred -------HHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHH-HHHHHHHcccccceEEEEEeCC
Q 043441 89 -------VGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAAL-HSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 89 -------~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
=..+....+.....+++.+++--+. +.++......+ +.+.+. ... ..++|+++|.
T Consensus 108 ~~~~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~-~~~--~~tiii~sh~ 170 (194)
T cd03213 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRL-ADT--GRTIICSIHQ 170 (194)
T ss_pred HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHH-HhC--CCEEEEEecC
Confidence 0122233445566777765554333 47777764443 444443 222 4578888885
No 370
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.59 E-value=4e-07 Score=68.60 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.-.++..++++|++|||||||++.|+|...+.+|
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467789999999999999999999997654444
No 371
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.59 E-value=6.8e-07 Score=63.97 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 367789999999999999999999997644444
No 372
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.59 E-value=7.6e-07 Score=68.13 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=28.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|+|...+..|
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G 96 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAG 96 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence 357889999999999999999999997654444
No 373
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.59 E-value=8.9e-07 Score=63.52 Aligned_cols=33 Identities=30% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|+|||||++.|+|......|
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 457789999999999999999999997654444
No 374
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1e-06 Score=64.14 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=27.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.-+.+..+.|+||+|||||||+++++|.-....+
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 3456689999999999999999999995544444
No 375
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.58 E-value=7.8e-07 Score=63.82 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|.....+|
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 60 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 357789999999999999999999997654343
No 376
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=3.1e-07 Score=67.00 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=74.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCC-CCccceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCcHHH----
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFV---- 89 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~---~~~~~~~v~DtpG~~~~~~~~~~~---- 89 (173)
=..+|+-||.+|-||||||+.|++... ....+ ..-.+...+...+++ .-...+.++||.|+.+.-. .+..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQin-K~~Syk~i 118 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQIN-KEDSYKPI 118 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccC-cccccchH
Confidence 456899999999999999999998763 33322 111222222222222 1224789999999997522 1111
Q ss_pred ------------HHH--HHHHH-HhccCCceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 90 ------------GME--IVKCI-GLAKDGIHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 90 ------------~~~--~~~~~-~~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++ +++.+ ...-.+.|++++.+..+ ..+...+.-.++.+.+. .+++-|+-|.|....
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH
Confidence 111 11111 12345678888877664 34444455555544443 678888889998865
No 377
>PRK10908 cell division protein FtsE; Provisional
Probab=98.57 E-value=9.1e-07 Score=63.69 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG 57 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 367889999999999999999999997654444
No 378
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.57 E-value=8.4e-07 Score=66.98 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++++|++|||||||++.|+|...+..|
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G 62 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 56788999999999999999999997654444
No 379
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.1e-07 Score=62.50 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=76.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
++...+++++|--|+||+|+.-.+--.+ ....-+|.......+.+ ++-.+.+||.-|..+ ++.
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvge-----vvttkPtigfnve~v~y-KNLk~~vwdLggqtS-----------irP 77 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGE-----VVTTKPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRP 77 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCc-----ccccCCCCCcCcccccc-ccccceeeEccCccc-----------ccH
Confidence 3477899999999999999765543211 11222333334444555 788999999888653 556
Q ss_pred HHHhccCCceEEEEEeecCCCCC--HHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFP--QEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+..++.+.+++|+|+|.+++.. .....+.-.+.+--- .....+++.||.|....
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eL--q~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEEL--QHAKLLVFANKQDYSGA 134 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhh--cCceEEEEeccccchhh
Confidence 66678889999999999985433 333344333443211 12568899999997644
No 380
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.56 E-value=1.3e-06 Score=66.81 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=53.6
Q ss_pred EEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC--------CHHHHHHHHHHHH
Q 043441 59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF--------PQEEEAALHSWQT 130 (173)
Q Consensus 59 ~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~--------~~~~~~~~~~l~~ 130 (173)
....... .+..+.++|..|... .++.+..++.++++++||++.++.- .......+..+.+
T Consensus 175 ~~~~f~~-~~~~~~~~DvgGqr~-----------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~ 242 (342)
T smart00275 175 QETAFIV-KKLFFRMFDVGGQRS-----------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFES 242 (342)
T ss_pred EEEEEEE-CCeEEEEEecCCchh-----------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHH
Confidence 3333444 566788999988542 2333345778999999999998321 1223455555666
Q ss_pred HHccc--ccceEEEEEeCCCCCCC
Q 043441 131 LFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 131 ~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
++..+ ...|+++++||.|.+..
T Consensus 243 l~~~~~~~~~piil~~NK~D~~~~ 266 (342)
T smart00275 243 ICNSRWFANTSIILFLNKIDLFEE 266 (342)
T ss_pred HHcCccccCCcEEEEEecHHhHHH
Confidence 65543 33699999999998853
No 381
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.56 E-value=9.3e-07 Score=63.18 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++++|++|+|||||++.|+|......|
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG 55 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 467889999999999999999999997654444
No 382
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=7.5e-07 Score=63.62 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=25.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++ .++++|++|+|||||++.|.|......|
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 54 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTPPSSG 54 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 346 9999999999999999999997654444
No 383
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.56 E-value=1.7e-06 Score=61.20 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 457889999999999999999999997644443
No 384
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=1.2e-06 Score=62.57 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357788999999999999999999997644333
No 385
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.55 E-value=1.1e-06 Score=62.68 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|.....+|
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 357789999999999999999999997654444
No 386
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.55 E-value=6e-07 Score=67.97 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS 50 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~ 50 (173)
-..+..++++||+||||||+++.|.|.....+|..
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I 60 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 45677899999999999999999999887666543
No 387
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.55 E-value=1.9e-06 Score=61.85 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=29.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
-.++..+.++|++|+||||+.+.|.|...+..|.
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~ 63 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce
Confidence 4678899999999999999999999988766654
No 388
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=1.6e-06 Score=61.94 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|...+..|
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 457789999999999999999999997654444
No 389
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.54 E-value=2.1e-06 Score=61.33 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|...+.++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357788999999999999999999997654444
No 390
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.54 E-value=5.7e-07 Score=66.44 Aligned_cols=123 Identities=20% Similarity=0.118 Sum_probs=69.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCc---cccC----CC----------CccceeeEEEEEE-----------ee--C
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAF---KSRA----SS----------SGVTSTCEMQRTV-----------LK--D 67 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~---~~~~----~~----------~~~t~~~~~~~~~-----------~~--~ 67 (173)
+..+++++|++|+||||++..|.+.-.. ..+. .. ............. .. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 5589999999999999999887653210 0000 00 0000001111000 00 2
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+..++++||||.... ......++...+... .++.+++|++++ .-.......++ .|.. ...--+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~-~~~~d~~~~~~----~f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIIT----NFKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCc-cCHHHHHHHHH----HhCC--CCCCEEEEEee
Confidence 457899999998742 234455566555433 456678899886 22222223333 3333 26678999999
Q ss_pred CCCCC
Q 043441 148 DELED 152 (173)
Q Consensus 148 D~~~~ 152 (173)
|+-..
T Consensus 222 Det~~ 226 (270)
T PRK06731 222 DETAS 226 (270)
T ss_pred cCCCC
Confidence 99864
No 391
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.54 E-value=1.3e-06 Score=62.80 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|.....+|
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 357789999999999999999999997654444
No 392
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.3e-07 Score=68.23 Aligned_cols=126 Identities=16% Similarity=0.216 Sum_probs=84.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh--CCCCccccC------------------CCCccceeeEEEEEEeeCCceEEEEeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL--GRRAFKSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~--~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~v~Dt 76 (173)
...++.+++.-+-|||||+--.|+ |......|. ...+.+....+....+ .+..+.+.||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 456789999999999999996654 221111111 1135666677777777 8889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCccc
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEET 156 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~ 156 (173)
||..+++.+.- + .+-.+|..+.|+|+...+......+++.-+-. + .|++-.+||+|+-.-+...
T Consensus 89 PGHeDFSEDTY-------R----tLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR---~--iPI~TFiNKlDR~~rdP~E 152 (528)
T COG4108 89 PGHEDFSEDTY-------R----TLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR---D--IPIFTFINKLDREGRDPLE 152 (528)
T ss_pred CCccccchhHH-------H----HHHhhheeeEEEecccCccHHHHHHHHHHhhc---C--CceEEEeeccccccCChHH
Confidence 99998753322 1 22245888999999867766655544332221 2 7999999999988665433
Q ss_pred HHH
Q 043441 157 LED 159 (173)
Q Consensus 157 ~~~ 159 (173)
+-+
T Consensus 153 LLd 155 (528)
T COG4108 153 LLD 155 (528)
T ss_pred HHH
Confidence 333
No 393
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.54 E-value=1.1e-06 Score=62.32 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.-.++..++++|++|+|||||++.|.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999999997
No 394
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.54 E-value=2e-06 Score=63.34 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G 67 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 357789999999999999999999997654444
No 395
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=5.1e-07 Score=73.58 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=79.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeE--EEEE----------------EeeCCceEEEEeCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRT----------------VLKDGQVVNVIDTP 77 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~----------------~~~~~~~~~v~Dtp 77 (173)
.-+.+.|+++|-...|||-|+..|-+.++..+.+ .+.|.... +... .+ +-..+.+||||
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegea--ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~-kvPg~lvIdtp 548 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEA--GGITQQIGATYFPAENIREKTKELKKDAKKRL-KVPGLLVIDTP 548 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccc--cceeeeccccccchHHHHHHHHHHHhhhhhhc-CCCeeEEecCC
Confidence 3466899999999999999999998877643332 22222111 1111 01 22358899999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 78 GLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
|...+ .+.-.....-+|..|+|+|+...+.+.....++.|+.. ..|++|++||+|++-
T Consensus 549 ghEsF-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 549 GHESF-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRLY 606 (1064)
T ss_pred Cchhh-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhc
Confidence 96643 11112344557999999999877777777777777664 279999999999994
No 396
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.53 E-value=9.3e-07 Score=63.58 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 457889999999999999999999997654443
No 397
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.53 E-value=4.8e-07 Score=74.07 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.+++++|++|+||||+++.|+|.. ..+|
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 578899999999999999999999976 4444
No 398
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.53 E-value=4.5e-07 Score=70.23 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=67.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCcc---ccCC-------C-C----------ccceeeEEEEE-----------Ee
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFK---SRAS-------S-S----------GVTSTCEMQRT-----------VL 65 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~---~~~~-------~-~----------~~t~~~~~~~~-----------~~ 65 (173)
.+..++++|++|+||||++..|....... .+.. . . +.......... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45789999999999999998876421100 0000 0 0 00000000000 11
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEe
Q 043441 66 KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145 (173)
Q Consensus 66 ~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~t 145 (173)
.+..++++||||.... +.. ...++...+..... .+-.++|++++.. . ..+..+...|..- ..--+++|
T Consensus 253 -~~~DlVLIDTaGr~~~--~~~-~l~el~~~l~~~~~-~~e~~LVlsat~~--~---~~~~~~~~~~~~~--~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK--DFM-KLAEMKELLNACGR-DAEFHLAVSSTTK--T---SDVKEIFHQFSPF--SYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCcc--CHH-HHHHHHHHHHhcCC-CCeEEEEEcCCCC--H---HHHHHHHHHhcCC--CCCEEEEE
Confidence 3457999999998752 222 24455555554432 2356788888733 1 1122233333221 45779999
Q ss_pred CCCCCCC
Q 043441 146 GGDELED 152 (173)
Q Consensus 146 k~D~~~~ 152 (173)
|.|.-..
T Consensus 321 KlDet~~ 327 (388)
T PRK12723 321 KLDETTC 327 (388)
T ss_pred eccCCCc
Confidence 9998754
No 399
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.53 E-value=2.2e-07 Score=61.95 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=82.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
+..-..+|.++|.+..|||||+-...+...-.......+.....+-..+.. ....+.+||.-|.. ++.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~-t~IsfSIwdlgG~~-----------~~~ 83 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRG-TDISFSIWDLGGQR-----------EFI 83 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecc-eEEEEEEEecCCcH-----------hhh
Confidence 344567899999999999999988888664222222233333333333322 34578899988843 455
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
+.+.....++-+|+|++|.+.+.+.++ ..|. ++..+.....--++|.||.|+.-.....+++-+.+
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY---~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~ 150 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWY---RQARGLNKTAIPILVGTKYDLFIDLPPELQETISR 150 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHH---HHHhccCCccceEEeccchHhhhcCCHHHHHHHHH
Confidence 555556667889999999984444333 3333 33333222234567899999886544455554444
No 400
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.3e-06 Score=59.55 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
.++..++++|++|+|||||++.|.|...
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5668999999999999999999998654
No 401
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.53 E-value=1e-06 Score=63.06 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=27.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 357789999999999999999999997644333
No 402
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.52 E-value=3e-06 Score=60.66 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=28.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......|
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357889999999999999999999997654444
No 403
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.51 E-value=2.4e-07 Score=72.53 Aligned_cols=62 Identities=37% Similarity=0.386 Sum_probs=45.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~ 85 (173)
..+|.+||.+++||||+||+|.|.... +-.+.++-|.-.+-.. -...+.+.|+||+.-++..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~----ls~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIF----LSPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEE----cCCCceecCCCCccccCCC
Confidence 789999999999999999999998753 2234455665554333 2456789999999865543
No 404
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.51 E-value=9.9e-07 Score=62.72 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=27.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|.|...+..|
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 56789999999999999999999997654444
No 405
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=2.5e-06 Score=60.89 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.-.++..++++|++|||||||++.|+|......|
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3467889999999999999999999997654444
No 406
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1.6e-06 Score=62.98 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 457789999999999999999999997654444
No 407
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.51 E-value=1.6e-06 Score=65.32 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|+|.....+|
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 59 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRG 59 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997654343
No 408
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.51 E-value=5.2e-07 Score=74.76 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=29.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
..+++.+|+++|++|||||||.+.|+|...+..|.
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 34688999999999999999999999987665554
No 409
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=3.9e-06 Score=61.77 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......|
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 457789999999999999999999997654444
No 410
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.51 E-value=1.3e-06 Score=62.34 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......|
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357789999999999999999999997654444
No 411
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.50 E-value=5.9e-07 Score=73.59 Aligned_cols=32 Identities=34% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.+++++|++|+|||||++.|+|...+.+|
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 47788999999999999999999997765444
No 412
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.50 E-value=8.2e-07 Score=61.79 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCC------CCcHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS------AGSEFV 89 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~------~~~~~~ 89 (173)
-.++..++++|++|+|||||++.|.|......+............ .... .....++.+.|.+.... .....=
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~-~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKAL-SSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHH-HhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 457789999999999999999999997654443211111000000 0000 01111222222222100 000111
Q ss_pred HHHHHHHHHhccCCceEEEEEeecCCCCCHHHH-HHHHHHHHHHcccccceEEEEEeCC
Q 043441 90 GMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEE-AALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
..+....+.....+++.+++--+.+ .++.... ..++.+.+. .. ..+++++||.
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~-~LD~~~~~~l~~~l~~~-~~---~~tii~~sh~ 156 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTV-GLDPITERQLLSLIFEV-LK---DKTLIWITHH 156 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcc-cCCHHHHHHHHHHHHHH-cC---CCEEEEEecC
Confidence 2334445556777888766544444 7777654 444445444 22 4577777774
No 413
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.50 E-value=1.7e-06 Score=61.38 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=28.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 357889999999999999999999997654444
No 414
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=3.3e-06 Score=61.18 Aligned_cols=33 Identities=30% Similarity=0.262 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 54 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASG 54 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 357889999999999999999999997654444
No 415
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.50 E-value=6.8e-07 Score=72.33 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++.+++++|++|+|||||++.|+|...+..|
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 377 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357889999999999999999999997765544
No 416
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.49 E-value=9e-07 Score=68.35 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=72.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC---cccc------CCC--------CccceeeEEEEEEe-------------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA---FKSR------ASS--------SGVTSTCEMQRTVL------------- 65 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~---~~~~------~~~--------~~~t~~~~~~~~~~------------- 65 (173)
..++..|+++|-.||||||..-.|...-. .... ..+ .+......++....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 56788999999999999999876643110 0000 000 00011111111100
Q ss_pred ---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEE
Q 043441 66 ---KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIV 142 (173)
Q Consensus 66 ---~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 142 (173)
..+..++++||.|-.. ..+.+..++..+.... .||-+++|+|+... +.-....+.+.+.+ .-.-+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~---ide~Lm~El~~Ik~~~--~P~E~llVvDam~G--QdA~~~A~aF~e~l-----~itGv 244 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLH---IDEELMDELKEIKEVI--NPDETLLVVDAMIG--QDAVNTAKAFNEAL-----GITGV 244 (451)
T ss_pred HHHHcCCCEEEEeCCCccc---ccHHHHHHHHHHHhhc--CCCeEEEEEecccc--hHHHHHHHHHhhhc-----CCceE
Confidence 0223689999999774 3466777777665544 77999999999622 33334444444443 34778
Q ss_pred EEeCCCCC
Q 043441 143 VFTGGDEL 150 (173)
Q Consensus 143 v~tk~D~~ 150 (173)
++||.|--
T Consensus 245 IlTKlDGd 252 (451)
T COG0541 245 ILTKLDGD 252 (451)
T ss_pred EEEcccCC
Confidence 99999854
No 417
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=2.1e-06 Score=61.77 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=27.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|.....++
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997544333
No 418
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=3.2e-06 Score=62.71 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|+|...+..|
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G 79 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG 79 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 467889999999999999999999997654444
No 419
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.48 E-value=1.7e-06 Score=65.26 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++++|++|+|||||++.|+|...+..|
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G 57 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG 57 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997654444
No 420
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=2.1e-06 Score=66.02 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=28.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|...+..|
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G 61 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 356789999999999999999999998765555
No 421
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=2.7e-06 Score=59.89 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.++..++|+|++|+|||||++.|.|..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 577899999999999999999999854
No 422
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.48 E-value=1.9e-06 Score=61.91 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 367889999999999999999999997654444
No 423
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.47 E-value=2.5e-06 Score=60.64 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 357789999999999999999999997654444
No 424
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=7.2e-07 Score=66.13 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=70.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee--CCceEEEEeCCCCCCCCC--------
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSA-------- 84 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~v~DtpG~~~~~~-------- 84 (173)
.-+.+-++.++|++|||||||+..+-+...+.+|........-......... .+....++.-+.+.....
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 3467889999999999999999999887766555433222111110000000 011122222233322110
Q ss_pred ------CcHHH---------------------------HHHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHH
Q 043441 85 ------GSEFV---------------------------GMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQT 130 (173)
Q Consensus 85 ------~~~~~---------------------------~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~ 130 (173)
...+. +++...++......|+. ++|-.+++.+++.. ...++.+++
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i-LL~DEaTSALDP~TT~sIL~LL~~ 186 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI-LLCDEATSALDPETTQSILELLKD 186 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE-EEecCccccCChHHHHHHHHHHHH
Confidence 00110 44445555566666664 66777776777774 455555665
Q ss_pred HHcccccceEEEEEeC
Q 043441 131 LFGKKVFDYMIVVFTG 146 (173)
Q Consensus 131 ~~~~~~~~~~~iv~tk 146 (173)
+-..- .-+++++||
T Consensus 187 In~~l--glTIvlITH 200 (339)
T COG1135 187 INREL--GLTIVLITH 200 (339)
T ss_pred HHHHc--CCEEEEEec
Confidence 53332 568999999
No 425
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=2.3e-06 Score=62.46 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG 56 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357788999999999999999999997654443
No 426
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.47 E-value=4.8e-06 Score=60.57 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G 76 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG 76 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 357789999999999999999999997644444
No 427
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=2.4e-06 Score=65.80 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G 59 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 346778999999999999999999997655444
No 428
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.47 E-value=2.7e-06 Score=65.88 Aligned_cols=33 Identities=36% Similarity=0.386 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G 58 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 356788999999999999999999997654444
No 429
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.47 E-value=1.3e-06 Score=63.83 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+-+.+..++++|++|||||||+++|.|.-....|
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 4567889999999999999999999996654444
No 430
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.47 E-value=3.3e-06 Score=60.16 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++++|++|+|||||++.|.|......|
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG 57 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 367889999999999999999999997654444
No 431
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.46 E-value=9e-07 Score=73.76 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=28.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
-+++.+++++|++|||||||++.|+|...+..|.
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 3578899999999999999999999977655553
No 432
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.46 E-value=2e-06 Score=64.77 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=22.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
......++++|++|+|||||++.+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999764
No 433
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.46 E-value=7.2e-06 Score=60.06 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G 54 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG 54 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 357789999999999999999999997654444
No 434
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=4.1e-06 Score=59.14 Aligned_cols=33 Identities=24% Similarity=0.091 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|+|||||++.|.|......|
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357789999999999999999999997654444
No 435
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.45 E-value=8.7e-07 Score=65.59 Aligned_cols=70 Identities=26% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC-----ccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA-----FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~ 87 (173)
.+....++++|-+|+|||||||++..... ...+ ..++.|......-.-. ....++++||||...++....
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG-~~pGVT~~V~~~iri~-~rp~vy~iDTPGil~P~I~~~ 214 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVG-AEPGVTRRVSERIRIS-HRPPVYLIDTPGILVPSIVDV 214 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceecc-CCCCceeeehhheEec-cCCceEEecCCCcCCCCCCCH
Confidence 35678999999999999999999854221 1122 2345565555422222 567899999999998765444
No 436
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.45 E-value=8.5e-07 Score=72.71 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=28.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++.+++++|++|+|||||++.|+|...+.+|
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 357789999999999999999999997765544
No 437
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.7e-06 Score=63.12 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 367889999999999999999999997654444
No 438
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.45 E-value=5.1e-06 Score=60.20 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|.|......|
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 40 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSG 40 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 46789999999999999999999997654444
No 439
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.45 E-value=1.1e-06 Score=70.57 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=34.8
Q ss_pred cCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE
Q 043441 12 LTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60 (173)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~ 60 (173)
....-.++-+|+++|++|+|||||++.|.|.....++....+.+....+
T Consensus 341 ~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igy 389 (530)
T COG0488 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGY 389 (530)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEE
Confidence 3344568889999999999999999999886655555444444443333
No 440
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.44 E-value=3.6e-06 Score=61.18 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 56 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG 56 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 357889999999999999999999997654444
No 441
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.44 E-value=1.3e-06 Score=60.21 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+.+.++.++|++|||||||+|.+.|...+.++
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 356789999999999999999999997765544
No 442
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.44 E-value=2e-06 Score=62.23 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 467889999999999999999999997654444
No 443
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.44 E-value=2.4e-06 Score=59.37 Aligned_cols=27 Identities=33% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.-.++.+++|+|++|+|||||++.+++
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 456788999999999999999999874
No 444
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.2e-06 Score=71.59 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=80.4
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc--------------CCCCccceeeEEEEEEeeCCceEEEEeCCC
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG 78 (173)
+..+...++++++.-...|||||..+|+..+...+. -...+.|-......... +.-.+.+||+||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspg 81 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPG 81 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCC
Confidence 345667789999999999999999999765432111 12234555554444444 566889999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
..++.. +.. ...+-+|..++++|+........... +++.+-+. ..+++|+||+|++
T Consensus 82 hvdf~s-------evs----sas~l~d~alvlvdvvegv~~qt~~v---lrq~~~~~--~~~~lvinkidrl 137 (887)
T KOG0467|consen 82 HVDFSS-------EVS----SASRLSDGALVLVDVVEGVCSQTYAV---LRQAWIEG--LKPILVINKIDRL 137 (887)
T ss_pred ccchhh-------hhh----hhhhhcCCcEEEEeeccccchhHHHH---HHHHHHcc--CceEEEEehhhhH
Confidence 998632 222 23334488888899876666555444 44443333 6799999999954
No 445
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.43 E-value=2.8e-06 Score=65.34 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=27.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|.|......|
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G 59 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG 59 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCce
Confidence 56789999999999999999999998755444
No 446
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.42 E-value=7.2e-07 Score=64.55 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS 50 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~ 50 (173)
.-+.+..++++|++||||||+++.+-+.....++..
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I 58 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE
Confidence 446778899999999999999999877665545543
No 447
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=7e-06 Score=59.77 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997654444
No 448
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.42 E-value=8e-07 Score=74.33 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.+++++|++|+||||+++.|+|.....+|
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 57889999999999999999999997765544
No 449
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=1.5e-06 Score=67.85 Aligned_cols=128 Identities=21% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc-------------CCCCccceeeEEEEEEeeC----CceEEEEeCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGL 79 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~v~DtpG~ 79 (173)
.+.++..++.---.|||||...|+....-.+. -...+.|...+.....+.. .-.+.+|||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 45678899999999999999998753321111 0123666666655555422 136889999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
.++.- +..+. +..+.+.++++|++.... .+++....-.+..+ .-++-|+||.|+...+.+...+
T Consensus 87 VDFsY-------EVSRS----LAACEGalLvVDAsQGve---AQTlAN~YlAle~~--LeIiPViNKIDLP~Adpervk~ 150 (603)
T COG0481 87 VDFSY-------EVSRS----LAACEGALLVVDASQGVE---AQTLANVYLALENN--LEIIPVLNKIDLPAADPERVKQ 150 (603)
T ss_pred cceEE-------Eehhh----HhhCCCcEEEEECccchH---HHHHHHHHHHHHcC--cEEEEeeecccCCCCCHHHHHH
Confidence 98632 33333 334478899999985543 34555555555444 7799999999999876544433
Q ss_pred H
Q 043441 160 Y 160 (173)
Q Consensus 160 ~ 160 (173)
-
T Consensus 151 e 151 (603)
T COG0481 151 E 151 (603)
T ss_pred H
Confidence 3
No 450
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=5e-06 Score=63.98 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|.|.....+|
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G 53 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKG 53 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 56789999999999999999999997654444
No 451
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.42 E-value=8.6e-07 Score=73.97 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=27.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.+++++|++|+|||||++.|+|.....+|
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G 520 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 56889999999999999999999997765554
No 452
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.41 E-value=3.1e-06 Score=61.62 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++++|++|+|||||++.|+|......|
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG 56 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997654444
No 453
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=3.1e-06 Score=61.33 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 60 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 367889999999999999999999997654444
No 454
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.41 E-value=4.2e-06 Score=64.84 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
..+..++|+|++|+|||||++.|.|......|
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G 69 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 46778999999999999999999997765444
No 455
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.41 E-value=8.6e-07 Score=72.41 Aligned_cols=33 Identities=30% Similarity=0.242 Sum_probs=28.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++.+++++|++|+|||||++.|+|...+..|
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G 395 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG 395 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 357889999999999999999999997755444
No 456
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.41 E-value=8.1e-06 Score=58.81 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG 55 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997644444
No 457
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.41 E-value=8.9e-07 Score=72.26 Aligned_cols=33 Identities=36% Similarity=0.301 Sum_probs=28.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++.+++++|++|+|||||++.|+|.....+|
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G 387 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 357889999999999999999999997765544
No 458
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.41 E-value=4.8e-06 Score=63.28 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
......|.+.|++|||||||++.|..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998643
No 459
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=3.7e-06 Score=60.97 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=27.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 64 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 457789999999999999999999997644333
No 460
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.40 E-value=4.6e-06 Score=61.46 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G 57 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELSPDSG 57 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 357789999999999999999999997654444
No 461
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.40 E-value=5.6e-06 Score=60.65 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG 58 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 467788999999999999999999997654333
No 462
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.40 E-value=3.3e-06 Score=65.13 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.-..+..++|+|++|+|||||++.|.|......|
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G 48 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG 48 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce
Confidence 3467889999999999999999999997754444
No 463
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=4.4e-06 Score=64.80 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|.|......|
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G 74 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 46778999999999999999999998765444
No 464
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.40 E-value=4.1e-06 Score=63.63 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=57.6
Q ss_pred ccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCC--------CCCHHHHHH
Q 043441 53 GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRS--------RFPQEEEAA 124 (173)
Q Consensus 53 ~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--------~~~~~~~~~ 124 (173)
..|+......... ++..+.++|.+|... +.++++ .++.+++++|||+..++ ..+..-.+.
T Consensus 180 ~~T~GI~e~~F~~-k~~~f~~~DvGGQRs----------eRrKWi-hcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS 247 (354)
T KOG0082|consen 180 VPTTGIVEVEFTI-KGLKFRMFDVGGQRS----------ERKKWI-HCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES 247 (354)
T ss_pred cCcCCeeEEEEEe-CCCceEEEeCCCcHH----------HhhhHH-HhhcCCCEEEEEEehhhhhhhcccccchhHHHHH
Confidence 3455666666677 788999999999442 222222 48889999999999872 111112344
Q ss_pred HHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 125 LHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 125 ~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
++.+..+...+ ...++++.+||.|+.++
T Consensus 248 ~~LF~sI~n~~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 248 LKLFESICNNKWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred HHHHHHHhcCcccccCcEEEEeecHHHHHH
Confidence 44445444443 23589999999999864
No 465
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=2.7e-06 Score=63.06 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=27.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G 64 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 57889999999999999999999997654444
No 466
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.40 E-value=6.8e-06 Score=63.32 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|.|......|
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G 52 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG 52 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 56789999999999999999999997654444
No 467
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.40 E-value=5.8e-06 Score=58.10 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456789999999999999999999997654444
No 468
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.39 E-value=1e-06 Score=72.10 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.+++++|++|+|||||++.|+|...+..|
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G 398 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCc
Confidence 57788999999999999999999997765544
No 469
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.39 E-value=8.2e-07 Score=74.26 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=27.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.+++++|++|||||||++.|+|...+.+|
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 57889999999999999999999997765544
No 470
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.39 E-value=5e-06 Score=60.08 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G 65 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSG 65 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 357789999999999999999999997654444
No 471
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=3.6e-06 Score=61.42 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG 57 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997654444
No 472
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.39 E-value=3.6e-06 Score=65.72 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++++|++|+|||||++.|.|.....+|
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 357789999999999999999999997654444
No 473
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.39 E-value=4.8e-06 Score=63.79 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=28.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|...+.+|
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G 60 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 467788999999999999999999997765444
No 474
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.38 E-value=6.4e-06 Score=63.41 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=27.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|.|...+..+
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G 57 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG 57 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 56789999999999999999999997655444
No 475
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=4.2e-06 Score=57.71 Aligned_cols=118 Identities=17% Similarity=0.064 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....++++|..|.||+|+++..+-... ... ...|....++...+. +..++.+|||.|..-...-.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeF-e~~---y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd------ 77 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEF-EKT---YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD------ 77 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccc-eec---ccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc------
Confidence 4578999999999999999988776553 222 223444444433321 235789999999764211111
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
-++-...+.+++++.+.+++-. ...|.+.+....++ .|+++..||.|--..
T Consensus 78 -----gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 78 -----GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKAR 129 (216)
T ss_pred -----ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecccc
Confidence 1233345667788887677654 35666666666554 799999999996543
No 476
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=7.8e-06 Score=58.52 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.+ ..++|+|++|+|||||++.|.|...+..|
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 52 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG 52 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 56 89999999999999999999997654444
No 477
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.38 E-value=2.2e-06 Score=67.48 Aligned_cols=71 Identities=18% Similarity=0.100 Sum_probs=43.6
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCC
Q 043441 69 QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 69 ~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
..++++||||.... .+.+..++....... .++.+++|+++... . ..++..+. |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHHHh--cccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 37899999997753 344555555554333 56888999998632 2 33333333 3321 134678899999
Q ss_pred CCC
Q 043441 149 ELE 151 (173)
Q Consensus 149 ~~~ 151 (173)
.-.
T Consensus 244 ~~a 246 (437)
T PRK00771 244 GTA 246 (437)
T ss_pred CCC
Confidence 754
No 478
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=4.2e-06 Score=62.24 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......|
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG 57 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357889999999999999999999997654444
No 479
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.37 E-value=4.8e-06 Score=64.25 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKS 47 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~ 47 (173)
.++..++|+|++|+|||||++.|.|......
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5677899999999999999999999765444
No 480
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.37 E-value=3.2e-06 Score=68.21 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|.|......|
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G 66 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 56788999999999999999999997654444
No 481
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.37 E-value=8.7e-06 Score=58.76 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.-.++..++|+|++|+|||||++.|.|......+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3467889999999999999999999997654444
No 482
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=4.7e-06 Score=63.94 Aligned_cols=33 Identities=21% Similarity=0.073 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|...+..|
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G 60 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 357789999999999999999999997654444
No 483
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=4.2e-06 Score=62.38 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|+|||||++.|+|......|
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G 62 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 56788999999999999999999997654444
No 484
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=5.7e-06 Score=60.35 Aligned_cols=33 Identities=24% Similarity=0.134 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|+|......|
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 58 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 356789999999999999999999997654444
No 485
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=4.1e-06 Score=60.89 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 357789999999999999999999997654444
No 486
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=1.1e-05 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
-.++..++|+|++|+|||||++.|.|...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 46778999999999999999999999764
No 487
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=1.1e-05 Score=58.60 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=28.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......|
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G 55 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG 55 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 357889999999999999999999998755444
No 488
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1.7e-06 Score=70.46 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=29.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
.-+++..+++|||+|+||||+++.|.+...+.+|.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 44688899999999999999999999877665554
No 489
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.35 E-value=1e-05 Score=58.91 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG 55 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 467889999999999999999999997543333
No 490
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=6e-06 Score=64.48 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|...+..|
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 457789999999999999999999997654444
No 491
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.34 E-value=2.3e-06 Score=70.00 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=28.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++.+++++|++|+|||||++.|+|...+.+|
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G 395 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG 395 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 367889999999999999999999997755555
No 492
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.34 E-value=6.2e-06 Score=60.70 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 56 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG 56 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 357889999999999999999999997654444
No 493
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.8e-06 Score=63.63 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC---------ccccC-----CCCccceeeEEEEEEeeCCceEEEEeCCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA---------FKSRA-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~---------~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~ 81 (173)
..+-.+|..+|--..|||||..+|+..-. +.... ...+.|....-..++. .++.+-.+|+||.-+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 45568899999999999999999865211 10010 1235666666566666 778999999999775
Q ss_pred CCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHh
Q 043441 82 FSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYL 161 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 161 (173)
..++|..-+. -.|..|+|+.+.+..-+..++-+- +....+ ...+++++||+|+.++. .+-+.+
T Consensus 88 -------YvKNMItgAa----qmDgAILVVsA~dGpmPqTrEHiL-larqvG---vp~ivvflnK~Dmvdd~--ellelV 150 (394)
T COG0050 88 -------YVKNMITGAA----QMDGAILVVAATDGPMPQTREHIL-LARQVG---VPYIVVFLNKVDMVDDE--ELLELV 150 (394)
T ss_pred -------HHHHHhhhHH----hcCccEEEEEcCCCCCCcchhhhh-hhhhcC---CcEEEEEEecccccCcH--HHHHHH
Confidence 2344443332 237888889887655444332221 222222 25789999999999852 555555
Q ss_pred cc
Q 043441 162 GR 163 (173)
Q Consensus 162 ~~ 163 (173)
+-
T Consensus 151 em 152 (394)
T COG0050 151 EM 152 (394)
T ss_pred HH
Confidence 44
No 494
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.33 E-value=6.2e-06 Score=59.55 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 62 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLISPTSG 62 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 357789999999999999999999997654444
No 495
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.33 E-value=2.1e-06 Score=70.08 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=27.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++++|++|+|||||++.|+|...+.+|
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 57889999999999999999999997765444
No 496
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.33 E-value=5.3e-06 Score=59.09 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......+
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 63 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG 63 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 357789999999999999999999997654444
No 497
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.33 E-value=1.5e-05 Score=57.04 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|+|...+.+|
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence 356789999999999999999999997654444
No 498
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=6.4e-06 Score=60.96 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 66 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 357789999999999999999999997654333
No 499
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=6.1e-06 Score=61.28 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|+|......|
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 64 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357789999999999999999999997654444
No 500
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=4.5e-06 Score=62.07 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|+|||||++.|.|......|
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 367889999999999999999999997654444
Done!