Query 043441
Match_columns 173
No_of_seqs 112 out of 1130
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 08:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 2.8E-25 9.6E-30 160.4 13.9 145 15-163 25-169 (239)
2 3lxw_A GTPase IMAP family memb 99.9 1.7E-24 6E-29 157.1 12.0 145 15-164 17-163 (247)
3 2xtp_A GTPase IMAP family memb 99.9 3.3E-22 1.1E-26 145.9 15.9 142 15-161 18-160 (260)
4 3def_A T7I23.11 protein; chlor 99.9 1.6E-20 5.5E-25 137.3 16.7 143 17-163 34-177 (262)
5 1h65_A Chloroplast outer envel 99.9 1.7E-20 5.7E-25 137.7 16.0 143 17-163 37-180 (270)
6 3iev_A GTP-binding protein ERA 99.8 2.1E-19 7.3E-24 134.2 13.7 130 13-150 4-135 (308)
7 1wf3_A GTP-binding protein; GT 99.8 5.6E-19 1.9E-23 131.5 15.6 127 18-152 6-132 (301)
8 4dhe_A Probable GTP-binding pr 99.8 3.1E-19 1.1E-23 127.0 12.2 132 16-152 26-159 (223)
9 2dyk_A GTP-binding protein; GT 99.8 3.2E-18 1.1E-22 115.5 12.7 122 20-152 2-123 (161)
10 1svi_A GTP-binding protein YSX 99.8 1.4E-17 4.7E-22 116.0 16.3 128 16-153 20-150 (195)
11 2gj8_A MNME, tRNA modification 99.8 3.4E-18 1.2E-22 117.3 12.6 127 18-151 3-129 (172)
12 2qu8_A Putative nucleolar GTP- 99.8 1.3E-17 4.3E-22 119.3 15.4 137 12-153 22-158 (228)
13 3pqc_A Probable GTP-binding pr 99.8 6.2E-17 2.1E-21 112.4 17.4 127 16-152 20-148 (195)
14 2lkc_A Translation initiation 99.8 1.3E-17 4.5E-22 114.3 13.3 118 16-152 5-122 (178)
15 1z08_A RAS-related protein RAB 99.8 6.3E-18 2.2E-22 115.0 11.2 121 17-153 4-127 (170)
16 2gf9_A RAS-related protein RAB 99.8 1.3E-17 4.5E-22 115.8 12.6 127 12-153 15-143 (189)
17 2efe_B Small GTP-binding prote 99.8 5E-18 1.7E-22 116.8 10.2 123 16-153 9-133 (181)
18 1zbd_A Rabphilin-3A; G protein 99.7 2E-17 6.8E-22 116.0 12.3 122 17-153 6-129 (203)
19 1z0f_A RAB14, member RAS oncog 99.7 4.8E-18 1.7E-22 116.5 8.9 124 16-153 12-136 (179)
20 3tw8_B RAS-related protein RAB 99.7 4.1E-17 1.4E-21 112.0 13.5 121 16-153 6-129 (181)
21 2q3h_A RAS homolog gene family 99.7 1.3E-17 4.4E-22 116.8 11.1 134 1-152 2-139 (201)
22 1mky_A Probable GTP-binding pr 99.7 1.8E-17 6.3E-22 129.2 13.1 123 20-151 2-124 (439)
23 1z0j_A RAB-22, RAS-related pro 99.7 6.1E-18 2.1E-22 115.0 9.0 123 17-153 4-127 (170)
24 2g6b_A RAS-related protein RAB 99.7 3.8E-17 1.3E-21 112.2 13.0 122 17-153 8-132 (180)
25 2fg5_A RAB-22B, RAS-related pr 99.7 7.8E-18 2.7E-22 117.3 9.6 122 17-152 21-143 (192)
26 2il1_A RAB12; G-protein, GDP, 99.7 5.2E-18 1.8E-22 118.3 8.4 125 13-153 20-147 (192)
27 1upt_A ARL1, ADP-ribosylation 99.7 3.4E-17 1.2E-21 111.5 11.8 117 17-152 5-123 (171)
28 2bcg_Y Protein YP2, GTP-bindin 99.7 5.2E-17 1.8E-21 114.2 13.0 121 17-153 6-129 (206)
29 3oes_A GTPase rhebl1; small GT 99.7 4.3E-17 1.5E-21 114.3 12.5 129 11-153 16-145 (201)
30 2bme_A RAB4A, RAS-related prot 99.7 1.8E-17 6.3E-22 114.5 10.4 120 17-152 8-130 (186)
31 2oil_A CATX-8, RAS-related pro 99.7 1.6E-17 5.4E-22 115.7 10.1 123 16-152 22-145 (193)
32 1ek0_A Protein (GTP-binding pr 99.7 7.3E-18 2.5E-22 114.5 8.3 118 19-152 3-123 (170)
33 3tkl_A RAS-related protein RAB 99.7 2.3E-17 7.9E-22 114.9 11.0 122 16-153 13-137 (196)
34 1r2q_A RAS-related protein RAB 99.7 8.2E-18 2.8E-22 114.3 8.5 121 18-152 5-126 (170)
35 3t5d_A Septin-7; GTP-binding p 99.7 3.7E-17 1.3E-21 120.2 12.5 129 18-152 7-159 (274)
36 1z06_A RAS-related protein RAB 99.7 2.1E-17 7E-22 114.8 10.1 122 16-152 17-142 (189)
37 1ksh_A ARF-like protein 2; sma 99.7 2.3E-16 7.9E-21 109.0 15.0 117 17-152 16-134 (186)
38 2h17_A ADP-ribosylation factor 99.7 7.7E-17 2.6E-21 111.2 12.4 118 16-152 18-137 (181)
39 4bas_A ADP-ribosylation factor 99.7 1.4E-16 4.7E-21 111.1 13.6 124 12-152 10-142 (199)
40 1z2a_A RAS-related protein RAB 99.7 3.5E-17 1.2E-21 111.0 10.3 119 17-152 3-124 (168)
41 3bc1_A RAS-related protein RAB 99.7 4.3E-17 1.5E-21 113.1 10.9 123 16-152 8-142 (195)
42 3q3j_B RHO-related GTP-binding 99.7 4.3E-17 1.5E-21 115.6 11.1 125 11-151 19-145 (214)
43 2fh5_B SR-beta, signal recogni 99.7 1.2E-16 4E-21 113.0 13.3 120 17-153 5-131 (214)
44 3llu_A RAS-related GTP-binding 99.7 8.5E-17 2.9E-21 112.4 12.3 131 13-152 14-144 (196)
45 2erx_A GTP-binding protein DI- 99.7 2.5E-17 8.6E-22 112.1 9.3 123 18-153 2-125 (172)
46 2y8e_A RAB-protein 6, GH09086P 99.7 1.2E-17 4E-22 114.6 7.6 121 17-153 12-135 (179)
47 2a5j_A RAS-related protein RAB 99.7 3.6E-17 1.2E-21 113.8 10.1 121 16-152 18-141 (191)
48 1zd9_A ADP-ribosylation factor 99.7 2.1E-16 7.2E-21 109.7 14.0 119 16-152 19-139 (188)
49 1wms_A RAB-9, RAB9, RAS-relate 99.7 7.1E-17 2.4E-21 110.6 11.3 121 17-151 5-130 (177)
50 1g16_A RAS-related protein SEC 99.7 4.6E-17 1.6E-21 110.7 10.2 118 18-151 2-122 (170)
51 1u8z_A RAS-related protein RAL 99.7 4.2E-17 1.4E-21 110.5 9.9 120 18-153 3-125 (168)
52 3iby_A Ferrous iron transport 99.7 1.2E-16 4.1E-21 116.3 12.9 122 20-152 2-125 (256)
53 2nzj_A GTP-binding protein REM 99.7 1E-16 3.4E-21 109.5 11.8 123 17-153 2-127 (175)
54 2ew1_A RAS-related protein RAB 99.7 4.9E-17 1.7E-21 114.3 10.4 120 17-152 24-146 (201)
55 4dcu_A GTP-binding protein ENG 99.7 9.6E-18 3.3E-22 131.4 7.2 126 17-152 21-146 (456)
56 3t5g_A GTP-binding protein RHE 99.7 1.4E-16 4.7E-21 109.6 12.2 120 18-153 5-127 (181)
57 2hup_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 115.0 9.2 121 16-152 26-149 (201)
58 3cph_A RAS-related protein SEC 99.7 7.3E-17 2.5E-21 113.8 10.8 119 16-150 17-138 (213)
59 3dz8_A RAS-related protein RAB 99.7 1.1E-17 3.9E-22 116.3 6.5 123 17-153 21-144 (191)
60 2hjg_A GTP-binding protein ENG 99.7 1.9E-17 6.6E-22 129.0 8.5 123 20-152 4-126 (436)
61 1ky3_A GTP-binding protein YPT 99.7 5.6E-17 1.9E-21 111.4 9.9 124 16-152 5-133 (182)
62 2p5s_A RAS and EF-hand domain 99.7 1.4E-17 4.8E-22 116.6 6.9 119 16-150 25-146 (199)
63 4dkx_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 116.4 8.7 128 17-159 11-140 (216)
64 1moz_A ARL1, ADP-ribosylation 99.7 3.1E-16 1.1E-20 108.0 13.2 117 17-152 16-134 (183)
65 2yc2_C IFT27, small RAB-relate 99.7 1.4E-17 4.8E-22 116.9 6.6 121 16-151 17-146 (208)
66 1r8s_A ADP-ribosylation factor 99.7 1.5E-16 5.2E-21 107.6 11.4 114 20-152 1-116 (164)
67 3i8s_A Ferrous iron transport 99.7 1.7E-16 5.9E-21 116.6 12.5 123 19-152 3-127 (274)
68 2a9k_A RAS-related protein RAL 99.7 5.2E-17 1.8E-21 112.0 9.2 122 16-153 15-139 (187)
69 3q72_A GTP-binding protein RAD 99.7 1.2E-16 4E-21 108.4 10.8 120 19-153 2-122 (166)
70 3cpj_B GTP-binding protein YPT 99.7 9.2E-17 3.1E-21 114.4 10.5 121 16-152 10-133 (223)
71 3t34_A Dynamin-related protein 99.7 2.8E-16 9.4E-21 119.7 13.8 134 17-153 32-219 (360)
72 2h57_A ADP-ribosylation factor 99.7 9.2E-17 3.2E-21 111.5 10.3 123 15-152 17-141 (190)
73 2o52_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 114.9 8.0 121 17-153 23-146 (200)
74 4djt_A GTP-binding nuclear pro 99.7 6.2E-17 2.1E-21 114.7 9.5 122 16-152 8-132 (218)
75 2fu5_C RAS-related protein RAB 99.7 7.1E-17 2.4E-21 111.3 9.5 121 17-153 6-129 (183)
76 3clv_A RAB5 protein, putative; 99.7 2E-16 7E-21 110.4 12.0 114 17-148 5-158 (208)
77 2bov_A RAla, RAS-related prote 99.7 8.4E-17 2.9E-21 112.8 9.9 123 15-153 10-135 (206)
78 2hxs_A RAB-26, RAS-related pro 99.7 1.6E-16 5.6E-21 108.8 11.1 123 16-152 3-130 (178)
79 3cbq_A GTP-binding protein REM 99.7 6.5E-17 2.2E-21 113.1 9.2 135 9-157 13-150 (195)
80 3r7w_A Gtpase1, GTP-binding pr 99.7 2.5E-16 8.6E-21 117.5 12.8 127 18-151 2-129 (307)
81 3reg_A RHO-like small GTPase; 99.7 9.5E-17 3.2E-21 111.8 9.7 118 15-151 19-141 (194)
82 2hjg_A GTP-binding protein ENG 99.7 3.4E-17 1.2E-21 127.6 8.2 130 17-154 173-303 (436)
83 2x77_A ADP-ribosylation factor 99.7 1.4E-16 4.9E-21 110.4 10.4 117 17-152 20-138 (189)
84 1vg8_A RAS-related protein RAB 99.7 2.2E-16 7.5E-21 110.8 11.4 121 17-151 6-131 (207)
85 4dcu_A GTP-binding protein ENG 99.7 8.5E-17 2.9E-21 126.0 10.1 136 16-159 192-328 (456)
86 3kkq_A RAS-related protein M-R 99.7 1.6E-16 5.3E-21 109.5 10.1 125 13-153 12-139 (183)
87 1zj6_A ADP-ribosylation factor 99.7 3.9E-16 1.3E-20 108.1 12.1 117 17-152 14-132 (187)
88 1kao_A RAP2A; GTP-binding prot 99.7 1.1E-16 3.9E-21 108.2 9.2 120 18-153 2-124 (167)
89 1m7b_A RND3/RHOE small GTP-bin 99.7 1.3E-16 4.6E-21 110.2 9.7 119 16-151 4-125 (184)
90 2gco_A H9, RHO-related GTP-bin 99.7 1.4E-16 4.8E-21 111.7 9.8 124 11-152 17-144 (201)
91 3gee_A MNME, tRNA modification 99.7 2E-16 6.9E-21 124.1 11.7 128 18-153 232-359 (476)
92 2atx_A Small GTP binding prote 99.7 2.4E-16 8.4E-21 109.7 10.7 118 17-152 16-137 (194)
93 1c1y_A RAS-related protein RAP 99.7 1.3E-16 4.6E-21 108.0 9.2 120 19-153 3-124 (167)
94 1m2o_B GTP-binding protein SAR 99.7 1.1E-15 3.7E-20 106.4 14.0 117 17-152 21-139 (190)
95 2fn4_A P23, RAS-related protei 99.7 2.5E-16 8.5E-21 108.0 10.6 120 16-152 6-129 (181)
96 1fzq_A ADP-ribosylation factor 99.7 9E-16 3.1E-20 105.9 13.1 119 15-152 12-132 (181)
97 1ega_A Protein (GTP-binding pr 99.7 1.6E-16 5.4E-21 118.3 9.9 124 17-151 6-130 (301)
98 3a1s_A Iron(II) transport prot 99.7 5.2E-16 1.8E-20 113.1 12.5 123 17-152 3-125 (258)
99 2j1l_A RHO-related GTP-binding 99.7 1.9E-16 6.5E-21 112.2 9.9 118 17-152 32-153 (214)
100 2wji_A Ferrous iron transport 99.7 9.5E-16 3.2E-20 104.2 13.0 120 19-151 3-122 (165)
101 2f7s_A C25KG, RAS-related prot 99.7 6.9E-16 2.4E-20 109.2 12.5 119 17-152 23-156 (217)
102 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.6E-16 5.3E-21 109.6 8.9 118 17-152 3-124 (186)
103 2b6h_A ADP-ribosylation factor 99.7 5E-16 1.7E-20 108.2 11.3 118 16-152 26-145 (192)
104 2gf0_A GTP-binding protein DI- 99.7 1.4E-16 4.8E-21 111.1 8.5 120 17-151 6-128 (199)
105 1f6b_A SAR1; gtpases, N-termin 99.7 7.3E-16 2.5E-20 107.9 12.2 117 16-151 22-140 (198)
106 2atv_A RERG, RAS-like estrogen 99.7 2.3E-16 7.9E-21 110.1 9.2 127 9-152 17-147 (196)
107 4dsu_A GTPase KRAS, isoform 2B 99.7 3E-16 1E-20 108.4 9.7 119 18-152 3-124 (189)
108 3con_A GTPase NRAS; structural 99.7 5.1E-16 1.8E-20 107.6 10.7 120 16-151 18-140 (190)
109 2fv8_A H6, RHO-related GTP-bin 99.7 2.7E-16 9.1E-21 110.8 9.4 119 16-152 22-144 (207)
110 1jwy_B Dynamin A GTPase domain 99.7 7.3E-16 2.5E-20 115.1 12.1 140 17-162 22-222 (315)
111 1gwn_A RHO-related GTP-binding 99.7 3.4E-16 1.2E-20 110.3 9.6 118 17-151 26-146 (205)
112 3t1o_A Gliding protein MGLA; G 99.7 5.7E-16 2E-20 107.7 10.5 127 15-152 10-150 (198)
113 1x3s_A RAS-related protein RAB 99.7 2.2E-16 7.5E-21 109.7 8.0 121 17-151 13-135 (195)
114 4gzl_A RAS-related C3 botulinu 99.7 2.6E-16 9E-21 110.7 8.5 119 16-152 27-149 (204)
115 3q85_A GTP-binding protein REM 99.7 4.8E-16 1.6E-20 105.6 9.5 121 19-153 2-125 (169)
116 2ged_A SR-beta, signal recogni 99.7 7.5E-16 2.6E-20 107.1 10.6 122 17-153 46-172 (193)
117 3c5c_A RAS-like protein 12; GD 99.7 1E-15 3.4E-20 106.2 11.2 120 16-152 18-142 (187)
118 3geh_A MNME, tRNA modification 99.7 1.3E-16 4.5E-21 124.8 7.4 123 18-152 223-345 (462)
119 3gj0_A GTP-binding nuclear pro 99.7 1.5E-16 5.1E-21 113.1 7.1 124 14-152 10-134 (221)
120 1lnz_A SPO0B-associated GTP-bi 99.7 2E-16 6.7E-21 119.5 7.6 126 21-152 160-289 (342)
121 2iwr_A Centaurin gamma 1; ANK 99.7 6E-16 2.1E-20 106.1 9.4 113 17-150 5-121 (178)
122 2wjg_A FEOB, ferrous iron tran 99.7 2.3E-15 7.7E-20 104.1 12.3 124 15-151 3-126 (188)
123 3l0i_B RAS-related protein RAB 99.7 3.2E-17 1.1E-21 114.8 2.9 120 17-152 31-153 (199)
124 3qq5_A Small GTP-binding prote 99.7 4.3E-16 1.5E-20 120.5 9.3 125 16-153 31-156 (423)
125 2e87_A Hypothetical protein PH 99.6 8.9E-15 3.1E-19 111.2 16.3 128 17-152 165-295 (357)
126 3bwd_D RAC-like GTP-binding pr 99.6 2.6E-16 8.8E-21 108.2 7.1 118 17-152 6-127 (182)
127 2j0v_A RAC-like GTP-binding pr 99.6 6.9E-16 2.3E-20 108.9 9.4 118 17-152 7-128 (212)
128 2ce2_X GTPase HRAS; signaling 99.6 5E-16 1.7E-20 104.8 8.3 117 19-151 3-122 (166)
129 2aka_B Dynamin-1; fusion prote 99.6 6.6E-15 2.3E-19 109.1 14.3 132 17-153 24-208 (299)
130 3k53_A Ferrous iron transport 99.6 5.7E-15 1.9E-19 108.3 13.3 121 19-151 3-123 (271)
131 3ihw_A Centg3; RAS, centaurin, 99.6 9.9E-16 3.4E-20 106.1 8.7 116 13-150 14-132 (184)
132 2qtf_A Protein HFLX, GTP-bindi 99.6 5.8E-15 2E-19 112.4 13.2 127 18-152 178-307 (364)
133 2qpt_A EH domain-containing pr 99.6 6.1E-16 2.1E-20 123.5 8.0 128 17-152 63-233 (550)
134 1nrj_B SR-beta, signal recogni 99.6 4.4E-15 1.5E-19 105.2 11.4 124 16-153 9-136 (218)
135 4a9a_A Ribosome-interacting GT 99.6 3.2E-15 1.1E-19 113.8 10.9 125 17-150 70-195 (376)
136 3b1v_A Ferrous iron uptake tra 99.6 7.9E-15 2.7E-19 107.6 12.6 119 19-151 3-121 (272)
137 2g3y_A GTP-binding protein GEM 99.6 8.1E-15 2.8E-19 103.7 12.2 123 17-153 35-161 (211)
138 3o47_A ADP-ribosylation factor 99.6 5.9E-15 2E-19 111.1 12.1 116 18-152 164-281 (329)
139 1mky_A Probable GTP-binding pr 99.6 1.8E-15 6.3E-20 117.9 9.5 130 17-153 178-308 (439)
140 2x2e_A Dynamin-1; nitration, h 99.6 1.2E-14 4E-19 110.5 13.5 140 18-162 30-221 (353)
141 2cxx_A Probable GTP-binding pr 99.6 6E-15 2.1E-19 102.0 11.0 124 20-152 2-137 (190)
142 1xzp_A Probable tRNA modificat 99.6 1.3E-15 4.5E-20 119.7 8.0 121 19-152 243-365 (482)
143 2zej_A Dardarin, leucine-rich 99.6 4.4E-15 1.5E-19 102.6 9.5 117 19-152 2-127 (184)
144 3lvq_E ARF-GAP with SH3 domain 99.6 6.5E-15 2.2E-19 116.5 11.6 117 17-152 320-438 (497)
145 3p26_A Elongation factor 1 alp 99.6 9.8E-15 3.4E-19 115.1 10.8 121 17-153 31-187 (483)
146 3th5_A RAS-related C3 botulinu 99.4 1.5E-16 5E-21 111.8 0.0 120 17-152 28-149 (204)
147 2qag_A Septin-2, protein NEDD5 99.6 2.7E-14 9.4E-19 108.7 12.4 129 18-152 36-189 (361)
148 1pui_A ENGB, probable GTP-bind 99.6 6.8E-14 2.3E-18 98.4 12.9 127 15-152 22-152 (210)
149 2f9l_A RAB11B, member RAS onco 99.6 2.3E-14 7.9E-19 100.2 10.2 119 18-152 4-125 (199)
150 3zvr_A Dynamin-1; hydrolase, D 99.6 5.6E-14 1.9E-18 115.1 13.7 132 17-153 49-233 (772)
151 1zun_B Sulfate adenylate trans 99.6 6E-14 2.1E-18 109.2 13.3 120 17-152 22-172 (434)
152 3j2k_7 ERF3, eukaryotic polype 99.6 6.6E-14 2.3E-18 109.1 13.2 121 15-151 13-169 (439)
153 2j69_A Bacterial dynamin-like 99.6 1.6E-14 5.5E-19 118.2 10.1 123 17-152 67-245 (695)
154 3r7w_B Gtpase2, GTP-binding pr 99.6 3.6E-14 1.2E-18 105.9 11.1 121 21-152 1-121 (331)
155 3izq_1 HBS1P, elongation facto 99.5 4.7E-14 1.6E-18 113.8 12.3 121 16-152 164-320 (611)
156 3tr5_A RF-3, peptide chain rel 99.5 9.4E-15 3.2E-19 116.0 7.9 120 17-153 11-150 (528)
157 2cjw_A GTP-binding protein GEM 99.5 2E-14 7E-19 100.1 7.8 121 18-152 5-129 (192)
158 3izy_P Translation initiation 99.5 1.1E-15 3.7E-20 121.2 1.2 118 18-153 3-120 (537)
159 1wb1_A Translation elongation 99.5 1.1E-13 3.9E-18 108.9 12.5 119 17-152 17-140 (482)
160 2wkq_A NPH1-1, RAS-related C3 99.5 3.2E-14 1.1E-18 106.6 8.5 118 17-152 153-274 (332)
161 3dpu_A RAB family protein; roc 99.5 7.8E-14 2.7E-18 111.2 10.9 123 16-154 38-167 (535)
162 1oix_A RAS-related protein RAB 99.5 1.4E-13 4.9E-18 95.7 10.7 119 18-152 28-149 (191)
163 1d2e_A Elongation factor TU (E 99.5 2.4E-13 8.4E-18 104.7 13.0 117 18-151 2-133 (397)
164 3sjy_A Translation initiation 99.5 1.1E-13 3.8E-18 106.8 10.5 121 15-152 4-144 (403)
165 1zo1_I IF2, translation initia 99.5 8.9E-15 3E-19 115.2 4.3 117 17-152 2-118 (501)
166 2c78_A Elongation factor TU-A; 99.5 6.2E-14 2.1E-18 108.3 8.6 119 16-151 8-142 (405)
167 2xex_A Elongation factor G; GT 99.5 2.3E-13 7.9E-18 111.3 12.2 121 16-153 7-143 (693)
168 2h5e_A Peptide chain release f 99.5 1.2E-13 4E-18 109.9 10.0 120 17-153 11-150 (529)
169 1wxq_A GTP-binding protein; st 99.5 1.9E-13 6.6E-18 105.1 10.6 91 20-116 1-114 (397)
170 1s0u_A EIF-2-gamma, translatio 99.5 1.9E-12 6.5E-17 100.1 16.2 122 17-153 6-151 (408)
171 1dar_A EF-G, elongation factor 99.5 4.8E-13 1.6E-17 109.4 13.5 122 15-153 8-145 (691)
172 1kk1_A EIF2gamma; initiation o 99.5 9.8E-13 3.4E-17 101.7 14.0 122 16-152 7-152 (410)
173 1jny_A EF-1-alpha, elongation 99.5 1.3E-13 4.3E-18 107.4 9.0 119 17-151 4-158 (435)
174 1f60_A Elongation factor EEF1A 99.5 1.4E-13 4.6E-18 107.9 8.9 121 18-151 6-159 (458)
175 1udx_A The GTP-binding protein 99.5 6.6E-13 2.3E-17 102.5 11.6 126 20-152 158-284 (416)
176 2rdo_7 EF-G, elongation factor 99.5 1.4E-12 4.7E-17 106.9 13.9 121 16-153 7-150 (704)
177 1g7s_A Translation initiation 99.4 3E-13 1E-17 108.7 9.5 116 18-151 4-136 (594)
178 2qag_C Septin-7; cell cycle, c 99.4 2.2E-12 7.5E-17 99.7 13.4 129 18-152 30-182 (418)
179 2elf_A Protein translation elo 99.4 4.6E-13 1.6E-17 102.2 8.7 101 21-149 23-125 (370)
180 3sop_A Neuronal-specific septi 99.4 1.1E-12 3.9E-17 96.0 8.9 127 20-152 3-155 (270)
181 2ywe_A GTP-binding protein LEP 99.4 1.1E-12 3.8E-17 105.3 9.4 120 18-153 5-141 (600)
182 3cb4_D GTP-binding protein LEP 99.4 1E-12 3.5E-17 105.6 9.1 120 18-153 3-139 (599)
183 3vqt_A RF-3, peptide chain rel 99.4 4.5E-12 1.5E-16 101.2 12.4 120 17-153 29-168 (548)
184 3mca_A HBS1, elongation factor 99.4 5.5E-14 1.9E-18 113.1 1.2 121 16-152 174-330 (592)
185 2dy1_A Elongation factor G; tr 99.4 3.7E-12 1.3E-16 103.9 11.9 117 17-150 7-139 (665)
186 3avx_A Elongation factor TS, e 99.4 7E-12 2.4E-16 106.2 13.6 119 16-151 293-426 (1289)
187 2qag_B Septin-6, protein NEDD5 99.4 3.8E-12 1.3E-16 98.2 10.9 128 17-152 38-191 (427)
188 1r5b_A Eukaryotic peptide chai 99.3 9.3E-13 3.2E-17 103.4 6.1 121 17-151 41-195 (467)
189 2qnr_A Septin-2, protein NEDD5 99.3 1.6E-11 5.6E-16 91.2 11.6 130 17-152 16-170 (301)
190 1n0u_A EF-2, elongation factor 99.3 4.1E-12 1.4E-16 105.9 7.7 118 17-150 17-163 (842)
191 3c5h_A Glucocorticoid receptor 99.3 2.7E-12 9.1E-17 93.3 4.1 49 103-152 162-213 (255)
192 4fn5_A EF-G 1, elongation fact 99.2 1E-10 3.4E-15 96.1 12.8 121 17-153 11-153 (709)
193 3j25_A Tetracycline resistance 99.2 1E-11 3.5E-16 100.9 6.0 118 19-153 2-135 (638)
194 3h2y_A GTPase family protein; 99.2 5.2E-13 1.8E-17 101.8 -1.7 124 19-152 160-288 (368)
195 3szr_A Interferon-induced GTP- 99.2 1.3E-10 4.4E-15 93.9 11.5 129 20-152 46-229 (608)
196 2ohf_A Protein OLA1, GTP-bindi 99.2 2.4E-11 8.2E-16 93.0 6.5 94 15-114 18-127 (396)
197 1jal_A YCHF protein; nucleotid 99.2 1.3E-11 4.6E-16 93.5 5.0 90 20-115 3-108 (363)
198 3ec1_A YQEH GTPase; atnos1, at 99.2 4.8E-13 1.6E-17 102.1 -3.1 123 19-152 162-289 (369)
199 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 5.4E-11 1.8E-15 91.1 7.8 96 13-114 14-126 (392)
200 2www_A Methylmalonic aciduria 99.2 7.2E-11 2.5E-15 89.4 7.3 25 17-41 72-96 (349)
201 2dby_A GTP-binding protein; GD 99.1 1.2E-10 4.2E-15 88.6 7.1 90 20-115 2-111 (368)
202 1f5n_A Interferon-induced guan 99.1 5.6E-10 1.9E-14 89.5 10.2 110 15-130 34-147 (592)
203 2j37_W Signal recognition part 99.1 1.4E-09 4.6E-14 85.9 11.9 122 17-152 99-255 (504)
204 1puj_A YLQF, conserved hypothe 99.1 5.3E-10 1.8E-14 82.3 8.2 66 17-87 118-183 (282)
205 2p67_A LAO/AO transport system 99.0 2.6E-10 9.1E-15 86.1 5.9 26 16-41 53-78 (341)
206 3p32_A Probable GTPase RV1496/ 99.0 4.2E-10 1.4E-14 85.4 6.4 63 67-152 170-232 (355)
207 1yrb_A ATP(GTP)binding protein 99.0 1E-09 3.6E-14 79.5 8.3 76 70-152 110-186 (262)
208 1tq4_A IIGP1, interferon-induc 99.0 2.2E-09 7.6E-14 82.8 9.8 120 18-150 68-188 (413)
209 2qm8_A GTPase/ATPase; G protei 99.0 8.1E-11 2.8E-15 88.7 0.9 26 16-41 52-77 (337)
210 4fid_A G protein alpha subunit 98.9 1.3E-08 4.5E-13 76.5 12.1 84 56-151 149-242 (340)
211 3ohm_A Guanine nucleotide-bind 98.9 1.2E-08 4E-13 76.4 11.5 85 55-151 154-248 (327)
212 3cnl_A YLQF, putative uncharac 98.9 2.1E-09 7.2E-14 78.3 5.2 60 20-84 100-159 (262)
213 3dm5_A SRP54, signal recogniti 98.8 5.4E-08 1.8E-12 75.5 11.9 123 18-152 99-254 (443)
214 1cip_A Protein (guanine nucleo 98.8 2.7E-08 9.1E-13 75.4 9.5 81 58-150 183-273 (353)
215 1rj9_A FTSY, signal recognitio 98.7 6.7E-08 2.3E-12 71.8 9.5 127 18-151 101-261 (304)
216 3kl4_A SRP54, signal recogniti 98.7 2.7E-08 9.1E-13 77.1 7.4 124 18-151 96-252 (433)
217 2yhs_A FTSY, cell division pro 98.7 2.6E-08 8.9E-13 78.1 7.1 125 16-150 290-451 (503)
218 2wsm_A Hydrogenase expression/ 98.7 1.2E-08 4.1E-13 72.0 4.1 25 18-42 29-53 (221)
219 3e70_C DPA, signal recognition 98.7 1.8E-08 6.2E-13 75.6 4.7 123 17-151 127-282 (328)
220 3fvq_A Fe(3+) IONS import ATP- 98.7 1.6E-07 5.6E-12 71.0 9.8 32 17-48 28-59 (359)
221 1vpl_A ABC transporter, ATP-bi 98.7 8.7E-08 3E-12 69.5 7.8 33 16-48 38-70 (256)
222 2v3c_C SRP54, signal recogniti 98.6 4.6E-08 1.6E-12 76.0 6.7 121 18-152 98-253 (432)
223 4g1u_C Hemin import ATP-bindin 98.6 4E-08 1.4E-12 71.7 5.4 32 17-48 35-66 (266)
224 3rlf_A Maltose/maltodextrin im 98.6 1.2E-07 4.2E-12 72.2 8.3 32 17-48 27-58 (381)
225 2og2_A Putative signal recogni 98.6 1.4E-07 4.8E-12 71.5 8.5 129 16-151 154-317 (359)
226 3b9q_A Chloroplast SRP recepto 98.6 1.6E-07 5.5E-12 69.7 8.4 129 16-151 97-260 (302)
227 2pcj_A ABC transporter, lipopr 98.6 4.8E-07 1.6E-11 64.3 10.4 32 17-48 28-59 (224)
228 3tif_A Uncharacterized ABC tra 98.6 1.3E-07 4.3E-12 67.8 6.7 33 16-48 28-60 (235)
229 3tui_C Methionine import ATP-b 98.6 2.2E-07 7.5E-12 70.5 8.3 33 16-48 51-83 (366)
230 2yyz_A Sugar ABC transporter, 98.6 3.9E-07 1.3E-11 69.1 9.6 33 16-48 26-58 (359)
231 1t9h_A YLOQ, probable GTPase E 98.6 2.1E-08 7.1E-13 74.5 2.6 61 18-83 172-238 (307)
232 1g29_1 MALK, maltose transport 98.6 5.9E-07 2E-11 68.4 10.5 33 17-49 27-59 (372)
233 1oxx_K GLCV, glucose, ABC tran 98.5 5E-07 1.7E-11 68.4 9.3 34 16-49 28-61 (353)
234 1z47_A CYSA, putative ABC-tran 98.5 3.6E-07 1.2E-11 69.1 8.4 33 16-48 38-70 (355)
235 1ji0_A ABC transporter; ATP bi 98.5 2.2E-07 7.6E-12 66.7 6.9 32 17-48 30-61 (240)
236 2it1_A 362AA long hypothetical 98.5 4.6E-07 1.6E-11 68.8 8.8 33 16-48 26-58 (362)
237 2olj_A Amino acid ABC transpor 98.5 2.7E-07 9.1E-12 67.2 7.0 33 16-48 47-79 (263)
238 2yv5_A YJEQ protein; hydrolase 98.5 1.7E-07 5.8E-12 69.6 6.0 59 18-81 164-228 (302)
239 3nh6_A ATP-binding cassette SU 98.5 8.7E-08 3E-12 71.1 4.3 32 17-48 78-109 (306)
240 2onk_A Molybdate/tungstate ABC 98.5 1.9E-07 6.5E-12 67.0 5.9 31 17-48 23-53 (240)
241 1v43_A Sugar-binding transport 98.5 5.2E-07 1.8E-11 68.7 8.4 33 16-48 34-66 (372)
242 2nq2_C Hypothetical ABC transp 98.5 1.9E-06 6.5E-11 62.3 10.8 32 17-48 29-60 (253)
243 3gfo_A Cobalt import ATP-bindi 98.5 2.2E-07 7.6E-12 68.0 5.9 32 17-48 32-63 (275)
244 3q5d_A Atlastin-1; G protein, 98.5 7.4E-07 2.5E-11 69.3 8.9 27 16-42 64-90 (447)
245 1vma_A Cell division protein F 98.4 1.2E-07 4E-12 70.5 3.9 127 16-152 101-264 (306)
246 1sgw_A Putative ABC transporte 98.4 8.5E-07 2.9E-11 62.6 7.9 32 17-48 33-64 (214)
247 1u0l_A Probable GTPase ENGC; p 98.4 1.9E-07 6.6E-12 69.2 4.7 61 18-82 168-234 (301)
248 1j8m_F SRP54, signal recogniti 98.4 2E-06 6.9E-11 63.6 9.7 123 19-151 98-253 (297)
249 2ff7_A Alpha-hemolysin translo 98.4 4E-07 1.4E-11 65.6 5.8 32 17-48 33-64 (247)
250 3d31_A Sulfate/molybdate ABC t 98.4 6.3E-07 2.2E-11 67.7 6.8 33 16-48 23-55 (348)
251 2qi9_C Vitamin B12 import ATP- 98.4 2E-07 6.7E-12 67.3 3.6 30 17-46 24-53 (249)
252 2ixe_A Antigen peptide transpo 98.4 6.8E-07 2.3E-11 65.3 6.3 33 16-48 42-74 (271)
253 2px0_A Flagellar biosynthesis 98.4 3.5E-07 1.2E-11 67.6 4.5 123 17-152 103-254 (296)
254 3b5x_A Lipid A export ATP-bind 98.3 2.1E-06 7.3E-11 69.1 9.3 32 17-48 367-398 (582)
255 4a82_A Cystic fibrosis transme 98.3 4.1E-07 1.4E-11 73.2 4.9 32 17-48 365-396 (578)
256 2hf9_A Probable hydrogenase ni 98.3 7.7E-07 2.6E-11 62.8 5.7 25 18-42 37-61 (226)
257 2rcn_A Probable GTPase ENGC; Y 98.3 3.7E-07 1.3E-11 69.1 4.2 61 18-82 214-281 (358)
258 2xxa_A Signal recognition part 98.3 1.1E-05 3.7E-10 62.7 12.5 123 17-151 98-254 (433)
259 2ghi_A Transport protein; mult 98.3 1.3E-06 4.4E-11 63.5 6.5 29 16-44 43-71 (260)
260 3qf4_A ABC transporter, ATP-bi 98.3 8.5E-07 2.9E-11 71.5 5.8 32 17-48 367-398 (587)
261 1zu4_A FTSY; GTPase, signal re 98.3 2.3E-06 7.9E-11 63.9 7.0 127 16-152 102-269 (320)
262 3qf4_B Uncharacterized ABC tra 98.3 1E-06 3.5E-11 71.2 5.4 33 16-48 378-410 (598)
263 4f4c_A Multidrug resistance pr 98.2 1.8E-06 6.3E-11 75.4 6.1 32 17-48 1103-1134(1321)
264 3b60_A Lipid A export ATP-bind 98.2 2.2E-06 7.6E-11 69.0 5.5 32 17-48 367-398 (582)
265 2ffh_A Protein (FFH); SRP54, s 98.2 5.2E-06 1.8E-10 64.3 7.3 122 18-151 97-251 (425)
266 1zcb_A G alpha I/13; GTP-bindi 98.2 6.9E-06 2.4E-10 62.4 7.7 84 55-150 188-281 (362)
267 4f4c_A Multidrug resistance pr 98.1 1.5E-06 5.1E-11 76.0 3.9 32 17-48 442-473 (1321)
268 2yl4_A ATP-binding cassette SU 98.1 3.3E-06 1.1E-10 68.2 5.4 32 17-48 368-399 (595)
269 3bk7_A ABC transporter ATP-bin 98.1 9.1E-05 3.1E-09 59.9 13.2 33 17-49 380-412 (607)
270 1mv5_A LMRA, multidrug resista 98.1 3.4E-06 1.2E-10 60.6 4.3 33 16-48 25-57 (243)
271 1lvg_A Guanylate kinase, GMP k 98.1 1.4E-06 4.9E-11 60.6 2.2 25 18-42 3-27 (198)
272 1b0u_A Histidine permease; ABC 98.1 3E-06 1E-10 61.5 4.1 33 16-48 29-61 (262)
273 3g5u_A MCG1178, multidrug resi 98.1 4E-06 1.4E-10 73.2 5.4 32 17-48 414-445 (1284)
274 3ozx_A RNAse L inhibitor; ATP 98.0 0.00011 3.6E-09 58.7 13.0 32 17-48 292-323 (538)
275 2cbz_A Multidrug resistance-as 98.0 2.8E-06 9.6E-11 60.8 3.5 33 16-48 28-60 (237)
276 1g6h_A High-affinity branched- 98.0 2.8E-06 9.6E-11 61.5 3.6 33 16-48 30-62 (257)
277 4ido_A Atlastin-1; GTPase, GTP 98.0 0.00011 3.6E-09 57.2 12.5 142 16-163 64-238 (457)
278 2pze_A Cystic fibrosis transme 98.0 3.1E-06 1.1E-10 60.2 3.6 32 17-48 32-63 (229)
279 1znw_A Guanylate kinase, GMP k 98.0 2.4E-06 8.3E-11 59.7 2.9 28 16-43 17-44 (207)
280 1kgd_A CASK, peripheral plasma 98.0 2.8E-06 9.5E-11 58.1 3.0 25 18-42 4-28 (180)
281 2yz2_A Putative ABC transporte 98.0 4.6E-06 1.6E-10 60.7 4.1 33 16-48 30-62 (266)
282 2ihy_A ABC transporter, ATP-bi 98.0 3.7E-06 1.3E-10 61.6 3.6 32 17-48 45-76 (279)
283 1htw_A HI0065; nucleotide-bind 98.0 6.4E-06 2.2E-10 55.3 4.4 31 17-48 31-61 (158)
284 1yqt_A RNAse L inhibitor; ATP- 98.0 0.00016 5.5E-09 57.7 13.1 33 17-49 310-342 (538)
285 1s96_A Guanylate kinase, GMP k 98.0 3.4E-06 1.2E-10 59.7 2.9 28 17-44 14-41 (219)
286 3j16_B RLI1P; ribosome recycli 98.0 0.00017 5.7E-09 58.4 13.0 29 20-48 379-407 (608)
287 3tr0_A Guanylate kinase, GMP k 98.0 3.9E-06 1.3E-10 58.2 3.1 25 18-42 6-30 (205)
288 1ye8_A Protein THEP1, hypothet 98.0 3.6E-06 1.2E-10 57.6 2.7 23 21-43 2-24 (178)
289 1azs_C GS-alpha; complex (lyas 98.0 1.8E-05 6.2E-10 60.8 6.8 82 58-151 207-298 (402)
290 1z6g_A Guanylate kinase; struc 98.0 3.2E-06 1.1E-10 59.7 2.5 28 16-43 20-47 (218)
291 3lnc_A Guanylate kinase, GMP k 97.9 2.8E-06 9.6E-11 60.3 1.8 28 16-43 24-52 (231)
292 1zp6_A Hypothetical protein AT 97.9 7.1E-06 2.4E-10 56.3 3.7 26 17-42 7-32 (191)
293 3a00_A Guanylate kinase, GMP k 97.9 3.9E-06 1.3E-10 57.7 2.3 24 20-43 2-25 (186)
294 2zu0_C Probable ATP-dependent 97.9 6.9E-06 2.4E-10 59.8 3.7 27 16-42 43-69 (267)
295 1ls1_A Signal recognition part 97.9 3E-05 1E-09 57.3 7.1 123 18-152 97-252 (295)
296 2bbs_A Cystic fibrosis transme 97.9 7.2E-06 2.4E-10 60.4 3.6 32 17-48 62-93 (290)
297 3c8u_A Fructokinase; YP_612366 97.9 6E-06 2.1E-10 57.7 3.0 27 16-42 19-45 (208)
298 2d2e_A SUFC protein; ABC-ATPas 97.9 6.8E-06 2.3E-10 59.3 3.2 26 17-42 27-52 (250)
299 4e22_A Cytidylate kinase; P-lo 97.9 7.2E-06 2.4E-10 59.2 3.2 34 13-46 21-57 (252)
300 3ney_A 55 kDa erythrocyte memb 97.9 7.9E-06 2.7E-10 56.8 3.2 28 16-43 16-43 (197)
301 4gp7_A Metallophosphoesterase; 97.9 8E-06 2.7E-10 55.4 3.1 24 17-40 7-30 (171)
302 3tau_A Guanylate kinase, GMP k 97.9 8.4E-06 2.9E-10 57.0 3.3 28 16-43 5-32 (208)
303 2pjz_A Hypothetical protein ST 97.9 1.1E-05 3.7E-10 58.6 3.8 29 19-48 30-58 (263)
304 2eyu_A Twitching motility prot 97.8 9E-06 3.1E-10 59.0 3.1 28 16-43 22-49 (261)
305 3g5u_A MCG1178, multidrug resi 97.8 2E-05 6.9E-10 68.8 5.6 32 17-48 1057-1088(1284)
306 2bbw_A Adenylate kinase 4, AK4 97.8 1.2E-05 4E-10 57.7 3.4 31 15-45 23-56 (246)
307 3b85_A Phosphate starvation-in 97.8 6.8E-06 2.3E-10 57.6 1.7 33 17-50 20-52 (208)
308 3asz_A Uridine kinase; cytidin 97.8 1E-05 3.6E-10 56.4 2.7 26 17-42 4-29 (211)
309 2v9p_A Replication protein E1; 97.8 1.1E-05 3.9E-10 59.7 3.0 27 16-42 123-149 (305)
310 3ozx_A RNAse L inhibitor; ATP 97.7 2.7E-05 9.3E-10 62.1 4.8 34 15-48 21-54 (538)
311 2j41_A Guanylate kinase; GMP, 97.7 1.7E-05 5.9E-10 54.9 3.3 26 18-43 5-30 (207)
312 2xtz_A Guanine nucleotide-bind 97.7 4.3E-05 1.5E-09 57.8 5.5 73 68-151 182-264 (354)
313 2gza_A Type IV secretion syste 97.7 2.3E-05 8E-10 59.5 3.7 28 18-45 174-201 (361)
314 3aez_A Pantothenate kinase; tr 97.7 2.2E-05 7.4E-10 58.5 3.2 27 16-42 87-113 (312)
315 4eun_A Thermoresistant glucoki 97.7 2.1E-05 7.2E-10 54.5 2.9 25 17-41 27-51 (200)
316 1yqt_A RNAse L inhibitor; ATP- 97.7 3.4E-05 1.2E-09 61.5 4.4 35 15-49 43-77 (538)
317 3j16_B RLI1P; ribosome recycli 97.7 4.1E-05 1.4E-09 61.9 4.8 35 15-49 99-133 (608)
318 2i3b_A HCR-ntpase, human cance 97.6 2E-05 6.8E-10 54.4 2.4 25 20-44 2-26 (189)
319 2bdt_A BH3686; alpha-beta prot 97.6 2.4E-05 8.1E-10 53.7 2.6 22 20-41 3-24 (189)
320 2pt7_A CAG-ALFA; ATPase, prote 97.6 2.1E-05 7.3E-10 58.9 2.5 28 18-45 170-197 (330)
321 3gd7_A Fusion complex of cysti 97.6 3.4E-05 1.2E-09 59.1 3.6 28 17-44 45-72 (390)
322 1knq_A Gluconate kinase; ALFA/ 97.6 4.1E-05 1.4E-09 51.7 3.5 25 17-41 6-30 (175)
323 2jeo_A Uridine-cytidine kinase 97.6 3.1E-05 1.1E-09 55.5 3.0 27 15-41 21-47 (245)
324 2ehv_A Hypothetical protein PH 97.6 3.2E-05 1.1E-09 55.1 3.1 26 15-40 26-51 (251)
325 3uie_A Adenylyl-sulfate kinase 97.6 3.2E-05 1.1E-09 53.6 2.9 26 17-42 23-48 (200)
326 4a74_A DNA repair and recombin 97.6 2.5E-05 8.6E-10 55.0 2.4 27 16-42 22-48 (231)
327 2qor_A Guanylate kinase; phosp 97.6 3.6E-05 1.2E-09 53.5 3.1 25 18-42 11-35 (204)
328 3bk7_A ABC transporter ATP-bin 97.6 5.2E-05 1.8E-09 61.3 4.4 35 15-49 113-147 (607)
329 3jvv_A Twitching mobility prot 97.6 3.4E-05 1.1E-09 58.5 3.1 26 18-43 122-147 (356)
330 2ewv_A Twitching motility prot 97.6 3.6E-05 1.2E-09 58.6 2.9 27 17-43 134-160 (372)
331 1kag_A SKI, shikimate kinase I 97.5 3.7E-05 1.3E-09 51.8 2.4 23 20-42 5-27 (173)
332 1sq5_A Pantothenate kinase; P- 97.5 5.1E-05 1.7E-09 56.3 3.1 27 16-42 77-103 (308)
333 2oap_1 GSPE-2, type II secreti 97.5 5.4E-05 1.8E-09 60.0 3.2 27 18-44 259-285 (511)
334 2npi_A Protein CLP1; CLP1-PCF1 97.5 3.1E-05 1.1E-09 60.6 1.8 28 17-44 136-163 (460)
335 1p9r_A General secretion pathw 97.5 5.2E-05 1.8E-09 58.6 3.0 27 17-43 165-191 (418)
336 1ex7_A Guanylate kinase; subst 97.5 6.6E-05 2.3E-09 51.6 3.0 22 21-42 3-24 (186)
337 2f1r_A Molybdopterin-guanine d 97.5 2.2E-05 7.6E-10 53.3 0.5 24 20-43 3-26 (171)
338 2vp4_A Deoxynucleoside kinase; 97.5 6.7E-05 2.3E-09 53.2 3.0 27 16-42 17-43 (230)
339 3thx_A DNA mismatch repair pro 97.4 0.0021 7.3E-08 54.4 12.3 23 17-39 660-682 (934)
340 2qt1_A Nicotinamide riboside k 97.4 0.00011 3.7E-09 51.1 3.7 27 16-42 18-44 (207)
341 3ec2_A DNA replication protein 97.4 5E-05 1.7E-09 51.6 1.9 26 18-43 37-62 (180)
342 3vaa_A Shikimate kinase, SK; s 97.4 0.00011 3.7E-09 50.9 3.5 25 17-41 23-47 (199)
343 1lw7_A Transcriptional regulat 97.4 5.4E-05 1.9E-09 57.4 2.0 26 19-44 170-195 (365)
344 1np6_A Molybdopterin-guanine d 97.4 8.8E-05 3E-09 50.5 2.7 24 19-42 6-29 (174)
345 1nij_A Hypothetical protein YJ 97.4 6.5E-05 2.2E-09 56.0 2.3 26 18-43 3-28 (318)
346 3euj_A Chromosome partition pr 97.4 8.9E-05 3.1E-09 58.2 3.1 26 20-45 30-55 (483)
347 2kjq_A DNAA-related protein; s 97.4 7E-05 2.4E-09 49.6 2.2 26 18-43 35-60 (149)
348 3tqc_A Pantothenate kinase; bi 97.4 0.0001 3.5E-09 55.0 3.3 26 16-41 89-114 (321)
349 1rz3_A Hypothetical protein rb 97.4 9.9E-05 3.4E-09 51.2 3.0 26 16-41 19-44 (201)
350 1cke_A CK, MSSA, protein (cyti 97.4 9.1E-05 3.1E-09 52.1 2.8 23 19-41 5-27 (227)
351 1jjv_A Dephospho-COA kinase; P 97.3 0.00013 4.5E-09 50.6 3.4 22 20-41 3-24 (206)
352 2cdn_A Adenylate kinase; phosp 97.3 0.00015 5.1E-09 50.1 3.7 26 16-41 17-42 (201)
353 3lw7_A Adenylate kinase relate 97.3 0.00013 4.5E-09 48.8 3.2 20 20-39 2-21 (179)
354 3kta_A Chromosome segregation 97.3 0.00014 4.6E-09 49.5 3.3 22 20-41 27-48 (182)
355 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5E-09 50.2 3.4 23 19-41 18-40 (202)
356 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.2E-09 49.0 3.3 23 19-41 3-25 (178)
357 1odf_A YGR205W, hypothetical 3 97.3 0.00016 5.4E-09 53.3 3.5 27 15-41 27-53 (290)
358 2obl_A ESCN; ATPase, hydrolase 97.3 0.00011 3.8E-09 55.4 2.7 29 16-44 68-96 (347)
359 3kb2_A SPBC2 prophage-derived 97.3 0.00016 5.5E-09 48.4 3.2 22 20-41 2-23 (173)
360 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4E-09 50.7 2.5 22 20-41 2-23 (204)
361 1ly1_A Polynucleotide kinase; 97.3 0.00017 5.8E-09 48.7 3.3 22 20-41 3-24 (181)
362 1y63_A LMAJ004144AAA protein; 97.3 0.00023 8E-09 48.5 3.9 26 17-42 8-33 (184)
363 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.0002 6.9E-09 47.4 3.4 22 19-40 23-44 (149)
364 2yvu_A Probable adenylyl-sulfa 97.3 0.00025 8.5E-09 48.4 3.9 28 14-41 8-35 (186)
365 1gvn_B Zeta; postsegregational 97.3 0.00022 7.5E-09 52.4 3.8 26 16-41 30-55 (287)
366 3trf_A Shikimate kinase, SK; a 97.2 0.00021 7.3E-09 48.6 3.4 22 19-40 5-26 (185)
367 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.4E-09 48.8 3.4 24 18-41 4-27 (193)
368 3cm0_A Adenylate kinase; ATP-b 97.2 0.00021 7.3E-09 48.6 3.3 23 18-40 3-25 (186)
369 3thx_B DNA mismatch repair pro 97.2 0.0016 5.5E-08 55.0 9.1 25 17-41 671-695 (918)
370 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00016 5.3E-09 50.8 2.5 25 17-41 21-45 (235)
371 2iw3_A Elongation factor 3A; a 97.2 0.00011 3.9E-09 62.2 2.0 32 17-48 697-728 (986)
372 1xjc_A MOBB protein homolog; s 97.2 0.00026 8.8E-09 47.9 3.3 23 19-41 4-26 (169)
373 1kht_A Adenylate kinase; phosp 97.2 0.00026 8.9E-09 48.2 3.4 23 19-41 3-25 (192)
374 1cr0_A DNA primase/helicase; R 97.2 0.00021 7E-09 52.5 2.9 29 15-43 31-59 (296)
375 1ewq_A DNA mismatch repair pro 97.2 0.0047 1.6E-07 51.3 11.1 25 19-43 576-600 (765)
376 2dpy_A FLII, flagellum-specifi 97.1 0.00016 5.6E-09 56.2 2.3 30 15-44 153-182 (438)
377 1aky_A Adenylate kinase; ATP:A 97.1 0.0003 1E-08 49.3 3.5 24 18-41 3-26 (220)
378 2wwf_A Thymidilate kinase, put 97.1 0.00034 1.2E-08 48.5 3.7 24 18-41 9-32 (212)
379 2pez_A Bifunctional 3'-phospho 97.1 0.0003 1E-08 47.7 3.3 24 18-41 4-27 (179)
380 1ukz_A Uridylate kinase; trans 97.1 0.00041 1.4E-08 47.9 4.0 26 16-41 12-37 (203)
381 1uf9_A TT1252 protein; P-loop, 97.1 0.00034 1.2E-08 48.2 3.5 27 16-42 5-31 (203)
382 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.0003 1E-08 53.5 3.4 20 21-40 25-44 (365)
383 2jaq_A Deoxyguanosine kinase; 97.1 0.00032 1.1E-08 48.3 3.3 21 21-41 2-22 (205)
384 2x8a_A Nuclear valosin-contain 97.1 0.00022 7.5E-09 52.0 2.5 21 22-42 47-67 (274)
385 2v54_A DTMP kinase, thymidylat 97.1 0.00037 1.3E-08 48.0 3.5 24 19-42 4-27 (204)
386 2cvh_A DNA repair and recombin 97.1 0.00031 1.1E-08 48.9 3.0 26 16-41 17-42 (220)
387 1nks_A Adenylate kinase; therm 97.1 0.00033 1.1E-08 47.7 3.1 22 20-41 2-23 (194)
388 1zak_A Adenylate kinase; ATP:A 97.1 0.00032 1.1E-08 49.2 3.1 24 18-41 4-27 (222)
389 2c95_A Adenylate kinase 1; tra 97.1 0.0004 1.4E-08 47.5 3.4 23 18-40 8-30 (196)
390 3iij_A Coilin-interacting nucl 97.1 0.00045 1.5E-08 46.8 3.5 23 18-40 10-32 (180)
391 2plr_A DTMP kinase, probable t 97.0 0.00041 1.4E-08 48.0 3.4 23 19-41 4-26 (213)
392 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0065 2.2E-07 43.3 9.8 25 17-41 37-61 (262)
393 1tev_A UMP-CMP kinase; ploop, 97.0 0.00043 1.5E-08 47.2 3.3 22 19-40 3-24 (196)
394 1svm_A Large T antigen; AAA+ f 97.0 0.00036 1.2E-08 53.2 3.0 26 16-41 166-191 (377)
395 1nn5_A Similar to deoxythymidy 97.0 0.00047 1.6E-08 47.8 3.5 24 18-41 8-31 (215)
396 1ixz_A ATP-dependent metallopr 97.0 0.0003 1E-08 50.4 2.4 21 22-42 52-72 (254)
397 3fb4_A Adenylate kinase; psych 97.0 0.00044 1.5E-08 48.2 3.2 20 21-40 2-21 (216)
398 1n0w_A DNA repair protein RAD5 97.0 0.00032 1.1E-08 49.7 2.5 27 16-42 21-47 (243)
399 2p5t_B PEZT; postsegregational 97.0 0.00035 1.2E-08 50.2 2.7 26 16-41 29-54 (253)
400 1zd8_A GTP:AMP phosphotransfer 97.0 0.00045 1.5E-08 48.7 3.2 23 18-40 6-28 (227)
401 3tlx_A Adenylate kinase 2; str 97.0 0.00052 1.8E-08 49.1 3.5 25 17-41 27-51 (243)
402 3nwj_A ATSK2; P loop, shikimat 97.0 0.00034 1.2E-08 50.3 2.5 23 19-41 48-70 (250)
403 1uj2_A Uridine-cytidine kinase 97.0 0.0005 1.7E-08 49.3 3.4 26 16-41 19-44 (252)
404 2grj_A Dephospho-COA kinase; T 97.0 0.0005 1.7E-08 47.5 3.2 25 17-41 10-34 (192)
405 1sxj_E Activator 1 40 kDa subu 97.0 0.0026 8.8E-08 47.6 7.4 20 22-41 39-58 (354)
406 1vht_A Dephospho-COA kinase; s 97.0 0.00058 2E-08 47.7 3.5 23 19-41 4-26 (218)
407 4b4t_L 26S protease subunit RP 97.0 0.0084 2.9E-07 46.6 10.2 26 16-41 212-237 (437)
408 1via_A Shikimate kinase; struc 97.0 0.00046 1.6E-08 46.5 2.9 21 21-41 6-26 (175)
409 3dl0_A Adenylate kinase; phosp 97.0 0.00053 1.8E-08 47.8 3.3 21 21-41 2-22 (216)
410 2iw3_A Elongation factor 3A; a 96.9 0.00038 1.3E-08 59.0 2.9 26 17-42 459-484 (986)
411 2ze6_A Isopentenyl transferase 96.9 0.00051 1.7E-08 49.4 3.2 22 20-41 2-23 (253)
412 2vli_A Antibiotic resistance p 96.9 0.00036 1.2E-08 47.2 2.3 23 18-40 4-26 (183)
413 4b4t_K 26S protease regulatory 96.9 0.009 3.1E-07 46.3 10.3 26 16-41 203-228 (428)
414 2o8b_B DNA mismatch repair pro 96.9 0.0062 2.1E-07 52.2 10.2 24 19-43 789-812 (1022)
415 3qks_A DNA double-strand break 96.9 0.00061 2.1E-08 47.4 3.4 21 19-39 23-43 (203)
416 1m7g_A Adenylylsulfate kinase; 96.9 0.00063 2.2E-08 47.4 3.5 25 17-41 23-47 (211)
417 1in4_A RUVB, holliday junction 96.9 0.0004 1.4E-08 52.0 2.6 23 20-42 52-74 (334)
418 3a8t_A Adenylate isopentenyltr 96.9 0.00071 2.4E-08 50.7 3.8 24 20-43 41-64 (339)
419 2f6r_A COA synthase, bifunctio 96.9 0.00081 2.8E-08 49.2 3.9 25 16-40 72-96 (281)
420 1iy2_A ATP-dependent metallopr 96.9 0.00042 1.4E-08 50.4 2.4 21 22-42 76-96 (278)
421 2bwj_A Adenylate kinase 5; pho 96.9 0.00064 2.2E-08 46.6 3.2 23 19-41 12-34 (199)
422 1gtv_A TMK, thymidylate kinase 96.9 0.00023 7.8E-09 49.5 0.8 21 21-41 2-22 (214)
423 1qf9_A UMP/CMP kinase, protein 96.9 0.00085 2.9E-08 45.6 3.7 23 19-41 6-28 (194)
424 3ux8_A Excinuclease ABC, A sub 96.9 0.00034 1.2E-08 57.2 1.9 24 17-40 346-369 (670)
425 3umf_A Adenylate kinase; rossm 96.9 0.001 3.4E-08 46.9 4.1 25 17-41 27-51 (217)
426 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00069 2.4E-08 48.9 3.3 23 19-41 4-26 (260)
427 2pt5_A Shikimate kinase, SK; a 96.9 0.00073 2.5E-08 45.1 3.2 21 21-41 2-22 (168)
428 1u0l_A Probable GTPase ENGC; p 96.9 0.0018 6E-08 47.8 5.6 66 69-152 63-130 (301)
429 1ak2_A Adenylate kinase isoenz 96.9 0.00081 2.8E-08 47.6 3.6 26 16-41 13-38 (233)
430 3r20_A Cytidylate kinase; stru 96.9 0.00072 2.5E-08 48.1 3.3 24 17-40 7-30 (233)
431 4eaq_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 47.2 3.9 27 16-42 23-49 (229)
432 2iyv_A Shikimate kinase, SK; t 96.8 0.00062 2.1E-08 46.2 2.7 21 20-40 3-23 (184)
433 4aby_A DNA repair protein RECN 96.8 0.00019 6.6E-09 55.1 0.1 23 17-40 59-81 (415)
434 1nlf_A Regulatory protein REPA 96.8 0.00052 1.8E-08 50.0 2.4 27 15-41 26-52 (279)
435 2pbr_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 45.7 3.3 21 21-41 2-22 (195)
436 4b4t_I 26S protease regulatory 96.8 0.016 5.6E-07 44.8 10.6 27 16-42 213-239 (437)
437 1e4v_A Adenylate kinase; trans 96.8 0.0008 2.7E-08 46.9 3.1 21 21-41 2-22 (214)
438 1q3t_A Cytidylate kinase; nucl 96.8 0.00097 3.3E-08 47.3 3.6 27 15-41 12-38 (236)
439 1e6c_A Shikimate kinase; phosp 96.8 0.00071 2.4E-08 45.3 2.8 22 20-41 3-24 (173)
440 3qkt_A DNA double-strand break 96.8 0.00086 2.9E-08 50.3 3.4 22 19-40 23-44 (339)
441 1wb9_A DNA mismatch repair pro 96.8 0.00074 2.5E-08 56.3 3.3 26 17-42 605-630 (800)
442 2z0h_A DTMP kinase, thymidylat 96.8 0.00091 3.1E-08 45.7 3.2 21 21-41 2-22 (197)
443 1jbk_A CLPB protein; beta barr 96.8 0.0011 3.9E-08 44.6 3.6 25 18-42 42-66 (195)
444 4b4t_J 26S protease regulatory 96.8 0.016 5.5E-07 44.5 10.2 26 16-41 179-204 (405)
445 3cr8_A Sulfate adenylyltranfer 96.7 0.00038 1.3E-08 55.7 1.2 27 17-43 367-393 (552)
446 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.5E-08 46.8 3.3 20 21-40 2-21 (223)
447 3be4_A Adenylate kinase; malar 96.7 0.00097 3.3E-08 46.7 3.1 22 19-40 5-26 (217)
448 1njg_A DNA polymerase III subu 96.7 0.0012 4.1E-08 46.2 3.6 22 20-41 46-67 (250)
449 1lv7_A FTSH; alpha/beta domain 96.7 0.00094 3.2E-08 47.9 3.1 24 19-42 45-68 (257)
450 1w1w_A Structural maintenance 96.7 0.00087 3E-08 51.9 3.0 24 18-41 25-48 (430)
451 1e69_A Chromosome segregation 96.7 0.00086 2.9E-08 49.9 2.8 21 20-40 25-45 (322)
452 3zvl_A Bifunctional polynucleo 96.7 0.0025 8.5E-08 49.2 5.4 26 16-41 255-280 (416)
453 3sr0_A Adenylate kinase; phosp 96.7 0.0012 4.2E-08 46.0 3.3 21 21-41 2-22 (206)
454 4b4t_H 26S protease regulatory 96.7 0.012 4.2E-07 45.9 9.0 26 16-41 240-265 (467)
455 2qmh_A HPR kinase/phosphorylas 96.6 0.0015 5.1E-08 45.3 3.5 26 18-43 33-58 (205)
456 1tf7_A KAIC; homohexamer, hexa 96.6 0.00079 2.7E-08 53.5 2.4 24 16-39 36-59 (525)
457 2o5v_A DNA replication and rep 96.6 0.0013 4.4E-08 49.8 3.4 21 21-41 28-48 (359)
458 1qhl_A Protein (cell division 96.6 0.00014 4.9E-09 51.6 -1.9 25 20-44 28-52 (227)
459 1a7j_A Phosphoribulokinase; tr 96.6 0.00077 2.6E-08 49.5 2.0 24 18-41 4-27 (290)
460 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.7E-08 43.8 3.1 23 18-40 6-28 (168)
461 1pzn_A RAD51, DNA repair and r 96.6 0.00089 3E-08 50.5 2.4 28 16-43 128-155 (349)
462 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.033 1.1E-06 41.4 10.9 26 17-42 43-68 (322)
463 3bos_A Putative DNA replicatio 96.6 0.0018 6E-08 45.5 3.6 24 18-41 51-74 (242)
464 3l82_B F-box only protein 4; T 96.6 0.0022 7.4E-08 45.0 3.9 86 70-162 97-186 (227)
465 1ltq_A Polynucleotide kinase; 96.5 0.0015 5.3E-08 47.8 3.3 22 20-41 3-24 (301)
466 2w58_A DNAI, primosome compone 96.5 0.0019 6.4E-08 44.5 3.4 23 20-42 55-77 (202)
467 1zcb_A G alpha I/13; GTP-bindi 96.5 0.0018 6.2E-08 49.1 3.5 23 17-39 31-53 (362)
468 3crm_A TRNA delta(2)-isopenten 96.5 0.002 6.8E-08 48.0 3.6 22 20-41 6-27 (323)
469 1puj_A YLQF, conserved hypothe 96.5 0.0035 1.2E-07 45.9 4.7 63 73-152 3-65 (282)
470 2p65_A Hypothetical protein PF 96.5 0.0016 5.4E-08 43.8 2.7 25 18-42 42-66 (187)
471 2dr3_A UPF0273 protein PH0284; 96.4 0.0017 5.9E-08 45.9 3.0 25 16-40 20-44 (247)
472 3foz_A TRNA delta(2)-isopenten 96.4 0.0024 8.3E-08 47.3 3.8 23 19-41 10-32 (316)
473 3ux8_A Excinuclease ABC, A sub 96.4 0.0013 4.6E-08 53.7 2.6 20 17-36 42-61 (670)
474 3exa_A TRNA delta(2)-isopenten 96.4 0.0022 7.7E-08 47.6 3.5 24 19-42 3-26 (322)
475 3u61_B DNA polymerase accessor 96.4 0.066 2.2E-06 39.4 11.5 22 20-41 49-70 (324)
476 3cf0_A Transitional endoplasmi 96.4 0.0025 8.6E-08 46.9 3.6 26 17-42 47-72 (301)
477 3b9p_A CG5977-PA, isoform A; A 96.4 0.0026 8.9E-08 46.5 3.6 24 18-41 53-76 (297)
478 3ake_A Cytidylate kinase; CMP 96.3 0.0025 8.4E-08 43.9 3.2 21 21-41 4-24 (208)
479 4ag6_A VIRB4 ATPase, type IV s 96.3 0.0021 7.2E-08 49.1 3.0 25 18-42 34-58 (392)
480 3auy_A DNA double-strand break 96.3 0.0023 8E-08 48.5 3.3 22 19-40 25-46 (371)
481 3d3q_A TRNA delta(2)-isopenten 96.3 0.0025 8.6E-08 47.8 3.2 22 20-41 8-29 (340)
482 1p5z_B DCK, deoxycytidine kina 96.3 0.0019 6.3E-08 46.6 2.3 28 15-42 20-47 (263)
483 3eph_A TRNA isopentenyltransfe 96.3 0.0026 9.1E-08 48.8 3.2 23 19-41 2-24 (409)
484 4fcw_A Chaperone protein CLPB; 96.3 0.0039 1.3E-07 45.7 4.1 25 18-42 46-70 (311)
485 3h4m_A Proteasome-activating n 96.2 0.0033 1.1E-07 45.6 3.6 25 17-41 49-73 (285)
486 3vfd_A Spastin; ATPase, microt 96.2 0.025 8.5E-07 43.1 8.6 24 18-41 147-170 (389)
487 3lv8_A DTMP kinase, thymidylat 96.2 0.0032 1.1E-07 44.8 3.4 31 11-41 19-49 (236)
488 3n70_A Transport activator; si 96.2 0.0033 1.1E-07 41.0 3.2 25 18-42 23-47 (145)
489 3ld9_A DTMP kinase, thymidylat 96.2 0.0037 1.3E-07 44.2 3.6 29 13-41 15-43 (223)
490 3t15_A Ribulose bisphosphate c 96.2 0.0041 1.4E-07 45.6 3.9 25 17-41 34-58 (293)
491 3v9p_A DTMP kinase, thymidylat 96.2 0.0029 9.8E-08 44.8 2.9 25 17-41 23-47 (227)
492 3syl_A Protein CBBX; photosynt 96.2 0.004 1.4E-07 45.7 3.8 25 17-41 65-89 (309)
493 3m6a_A ATP-dependent protease 96.2 0.0025 8.6E-08 50.9 2.8 25 18-42 107-131 (543)
494 1r6b_X CLPA protein; AAA+, N-t 96.1 0.013 4.3E-07 48.6 6.7 25 18-42 206-230 (758)
495 1tf7_A KAIC; homohexamer, hexa 96.1 0.0029 9.8E-08 50.3 2.8 28 16-43 278-305 (525)
496 1qvr_A CLPB protein; coiled co 96.1 0.011 3.9E-07 49.6 6.5 25 19-43 191-215 (854)
497 2ocp_A DGK, deoxyguanosine kin 96.1 0.0041 1.4E-07 44.1 3.3 23 19-41 2-24 (241)
498 3lda_A DNA repair protein RAD5 96.1 0.0034 1.2E-07 48.2 3.0 25 16-40 175-199 (400)
499 2ius_A DNA translocase FTSK; n 96.0 0.0035 1.2E-07 49.7 3.0 24 18-41 166-189 (512)
500 3cf2_A TER ATPase, transitiona 96.0 0.039 1.3E-06 46.1 9.3 27 16-42 235-261 (806)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=160.42 Aligned_cols=145 Identities=39% Similarity=0.685 Sum_probs=103.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
......+|+|+|.+|+|||||+|+|++...+..+......|..+......+ .+..+.+|||||+.+..........++.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 345678999999999999999999999887655544335566666666666 7889999999999987777777788888
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
+.+..+++++|++|+|++++ +++..+..+++.+.+.++.....|+++|+||+|++... .++++++.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~ 169 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLRE 169 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc--cHHHHHHh
Confidence 88888889999999999998 78888889999999888776567999999999998763 56655554
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.92 E-value=1.7e-24 Score=157.09 Aligned_cols=145 Identities=34% Similarity=0.509 Sum_probs=105.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc-HHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGMEI 93 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~-~~~~~~~ 93 (173)
+..+..+|+|+|.+|+|||||+|+|++...+.....+.+.|..+....... .+..+.||||||+.+..... +....++
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 446779999999999999999999999887665555545666666666666 78899999999998654332 3334455
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccc-cceEEEEEeCCCCCCCCcccHHHHhccc
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKV-FDYMIVVFTGGDELEDNEETLEDYLGRE 164 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~iv~tk~D~~~~~~~~~~~~~~~~ 164 (173)
.+++..+.+++|++|+|++++ +++..+..+++++.+.++... ..+++++.||.|+... +++++++..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~---~~~~~l~~~ 163 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG---SLHDYVSNT 163 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHC
T ss_pred HHHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC---CHHHHHhhc
Confidence 555555668999999999998 788888899999999987752 3688999999998664 677777653
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=3.3e-22 Score=145.94 Aligned_cols=142 Identities=32% Similarity=0.547 Sum_probs=109.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
......+|+|+|.+|+|||||+|+|++...+.....+.+.|.........+ .+..+.+|||||+.+.....+.....+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345678999999999999999999999876655444433455555555555 7889999999999987766666666777
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEe-CCCCCCCCcccHHHHh
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT-GGDELEDNEETLEDYL 161 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~t-k~D~~~~~~~~~~~~~ 161 (173)
+.+..+++.+|++++|++++ ++...+..+++.+.+.++.....|.++|+| |+|+... ...+++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i 160 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYM 160 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHH
Confidence 77777889999999999998 688888888888999887655577888888 9999854 455543
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=1.6e-20 Score=137.28 Aligned_cols=143 Identities=21% Similarity=0.270 Sum_probs=106.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|+|++....... ...+.|.......... .+..+.+|||||+.+.....+...+.+.++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 45789999999999999999999997742222 2233444444555555 788999999999987765555555555554
Q ss_pred HHhccCCceEEEEEeecCC-CCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 97 IGLAKDGIHAVLVGFSVRS-RFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
+ ...++|++++|+++.. .++..+..+++.+.+.++.....|+++|+||+|+...+....+++++.
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 4 2457899999987742 566777899999999988776679999999999976555678887765
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.86 E-value=1.7e-20 Score=137.73 Aligned_cols=143 Identities=22% Similarity=0.282 Sum_probs=101.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|+|++........ ..+.|.......... .+..+.+|||||+.+.....+.....+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 356899999999999999999999877432221 223343333444444 778899999999987644334333333332
Q ss_pred HHhccCCceEEEEEeecCC-CCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhcc
Q 043441 97 IGLAKDGIHAVLVGFSVRS-RFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLGR 163 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 163 (173)
+ ..+++|++++|+++.. .++..+..+++.+.+.++...+.|+++|+||+|+...+..++++|+++
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH
Confidence 2 3457899999987743 567777889999988887766679999999999886654466766543
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=2.1e-19 Score=134.16 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=94.7
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
.+.+++...|+++|.+|+|||||+|+|++....... .....|.......... . +..+.++||||+.+.. ....+.+
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~ 80 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGH 80 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHH
Confidence 345677899999999999999999999998753222 2223343333333344 5 7899999999998754 2345667
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHHHHH-HHHHHHHHcccccceEEEEEeCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAA-LHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
.+...+..++..+|++++|+|+++..+..+... ++.+.. ...|+++|+||+|+.
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 777777778889999999999997777776554 555444 237999999999998
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=5.6e-19 Score=131.46 Aligned_cols=127 Identities=20% Similarity=0.131 Sum_probs=90.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+|+++|.+|+|||||+|+|++........ .+..|.......... .+..+.+|||||+.+.. ..+.+.+...+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHH
Confidence 44689999999999999999999977532221 112232222222233 67899999999998643 34555667777
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++.+|++++|+|+++.++..+...++.+.+.. ...|+++|+||+|+...
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV---GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSS
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc---CCCCEEEEEECcccCCc
Confidence 77889999999999998777777655555555432 13799999999999865
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=3.1e-19 Score=126.98 Aligned_cols=132 Identities=13% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~--~~~~~ 93 (173)
.....+|+++|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+....... ....+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3467899999999999999999999976221222233445554444444225678999999998765433221 11222
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..........+|++++|+|+++.++..+..+++++.+ ...|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCCh
Confidence 2222223455899999999987788777777666655 22789999999999865
No 9
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=3.2e-18 Score=115.53 Aligned_cols=122 Identities=24% Similarity=0.223 Sum_probs=83.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
++|+++|.+|+|||||++++++....... ...+.+.......... .+..+.+|||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 58999999999999999999986632111 2223344444444555 677899999999886432 12233444455
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++..+|++++|+|+++.++.......+.+.+ ...|+++|+||+|+...
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-----KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-----HTCCEEEEEECCCSGGG
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-----cCCCEEEEEECcccccc
Confidence 6788999999999987777766666555554 22789999999998765
No 10
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=1.4e-17 Score=115.98 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=81.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....+|+++|.+|+|||||+|+|++...........+.|....... . +..+.+|||||+.+...... ....+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~-~~~~~~~ 94 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKS-EREAWGR 94 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHH-HHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHH-HHHHHHH
Confidence 34678999999999999999999998763222222233343333322 2 34799999999876543322 2223333
Q ss_pred HHHhc---cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLA---KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~---~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....+ ...+|++++|+|+++..+..+...++++.+ ...|+++|+||+|+....
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGG
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChH
Confidence 33333 345599999999987777777666666654 227899999999998753
No 11
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=3.4e-18 Score=117.32 Aligned_cols=127 Identities=22% Similarity=0.182 Sum_probs=83.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+..+|+++|.+|+|||||+|.|++....... ...+.+.......+.. ++..+.+|||||+.......+.. .+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~- 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERI--GIERA- 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHH--HHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHH--HHHHH-
Confidence 4578999999999999999999986532111 1222333333334444 67789999999987642211111 11111
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
..+++.+|++++|+|+++..+.....+++.+.+.... ..|+++|+||+|+..
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG 129 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCc
Confidence 2345688999999999866665566666666654332 378999999999854
No 12
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=1.3e-17 Score=119.35 Aligned_cols=137 Identities=17% Similarity=0.105 Sum_probs=83.2
Q ss_pred cCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 12 LTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
.|.......+|+++|.+|+|||||+|+|++.... .. .....|.......... .+..+.+|||||+.+.........
T Consensus 22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~- 97 (228)
T 2qu8_A 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQ-SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTI- 97 (228)
T ss_dssp CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EE-CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHH-
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhH-
Confidence 3444567799999999999999999999987642 11 1222344444444444 667899999999975322111110
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+. ..+...+..+|++++|+|+++..+.......+++..........|+++|+||+|+....
T Consensus 98 ~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 98 EM-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp HH-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred HH-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 01 11223356779999999998654433223333444432221237999999999998653
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=6.2e-17 Score=112.43 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=84.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHH--HHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~--~~~~~ 93 (173)
.....+|+++|.+|+|||||+|+|++.... ......+.+....... .+..+.+|||||+......... ....+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHH
Confidence 456689999999999999999999987732 2222223333332222 3457889999997754332211 12222
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..........++++++|+|+++.........++++.+. ..|+++|+||+|+...
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh
Confidence 22222334566999999999877777777776666654 2789999999999865
No 14
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=1.3e-17 Score=114.33 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=81.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.++..+|+++|.+|+|||||++++++........ ...+.......... .+..+.+|||||........
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--------- 72 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR--------- 72 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC---------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH---------
Confidence 4567899999999999999999999876432221 12222222233444 67789999999987643322
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+..+|++++|+++++.........++ ..... ..|+++|+||+|+...
T Consensus 73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~---~~~~~--~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 --ARGAQVTDIVILVVAADDGVMPQTVEAIN---HAKAA--NVPIIVAINKMDKPEA 122 (178)
T ss_dssp --CSSCCCCCEEEEEEETTCCCCHHHHHHHH---HHGGG--SCCEEEEEETTTSSCS
T ss_pred --HHHHhhCCEEEEEEECCCCCcHHHHHHHH---HHHhC--CCCEEEEEECccCCcC
Confidence 24677899999999998665555544443 33222 3789999999999875
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.76 E-value=6.3e-18 Score=115.04 Aligned_cols=121 Identities=10% Similarity=0.086 Sum_probs=75.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+..+|+++|.+|+|||||+|++++.......... ............ .+ ..+.+|||||... +.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT--LGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FH 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCC--CSCEEEEEEEES-SSCEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCc--cceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hh
Confidence 45589999999999999999999976532222111 121122222332 33 3688999999653 22
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....+++.+|++++|+|+++..+... ..+++.+.+..... .|+++|+||+|+....
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~ 127 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKER 127 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGC
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECccccccc
Confidence 233457889999999999984332221 34555555544333 7999999999997643
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=1.3e-17 Score=115.75 Aligned_cols=127 Identities=12% Similarity=0.056 Sum_probs=80.4
Q ss_pred cCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHH
Q 043441 12 LTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~ 90 (173)
.+...+...+|+++|.+|+|||||+|+|++...........+.+.. ....... ....+.+|||||.......
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~----- 87 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK--VKTVYRHDKRIKLQIWDTAGQERYRTI----- 87 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEE--EEEEEETTEEEEEEEEECCSCCSSCCS-----
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEE--EEEEEECCeEEEEEEEeCCCcHHHhhh-----
Confidence 3334456789999999999999999999986642222222222222 2222221 2347899999997654322
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...++..+|++++|+|+++..+.. ...+++.+.+... ...|+++|+||+|+....
T Consensus 88 ------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 88 ------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDER 143 (189)
T ss_dssp ------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC
T ss_pred ------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccc
Confidence 235678899999999997432222 1344444444321 237999999999987643
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.76 E-value=5e-18 Score=116.76 Aligned_cols=123 Identities=17% Similarity=0.142 Sum_probs=77.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.....+|+++|.+|+|||||+|++++...........+.+... ...... ....+.+|||||.... .
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~-----------~ 75 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS--QTLAVNDATVKFEIWDTAGQERY-----------H 75 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEE--EEEEETTEEEEEEEEECCCSGGG-----------G
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEE--EEEEECCEEEEEEEEeCCCChhh-----------h
Confidence 4556899999999999999999999866432222222222222 222221 2347899999996532 1
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....+++.+|++++|+|+++..+.. ...+++.+..... ...|+++|+||+|+....
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccc
Confidence 22234567889999999998443322 2345555554422 237899999999997654
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=2e-17 Score=116.01 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=78.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+...+|+++|.+|+|||||++.|++...........+.+.. ....... ....+.+|||||... +..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~ 72 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK--VKTIYRNDKRIKLQIWDTAGLER-----------YRT 72 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGG-----------GHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE--EEEEEECCeEEEEEEEECCCchh-----------hcc
Confidence 34589999999999999999999987642222222222222 2222221 234789999999753 223
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....+++.+|++++|+|+++..+.. ...+++.+..... ...|+++|+||+|+....
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSC
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCccc
Confidence 3456778899999999998432212 1234444444321 237999999999997653
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=4.8e-18 Score=116.47 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=77.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+...+|+++|.+|+|||||+|+|++...........+.+.......... ....+.+|||||.... ..
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~ 79 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQERF-----------RA 79 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT-EEEEEEEEECTTGGGT-----------CH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC-eEEEEEEEECCCChHh-----------hh
Confidence 45578999999999999999999998664222212222222222222211 2247899999995532 11
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....+++.+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+....
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQR 136 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGC
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccccc
Confidence 2234456789999999998442222 13444555554322 37899999999997543
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=4.1e-17 Score=111.99 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||+|+|++...... .....+.......... .+ ..+.+|||||......
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 73 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT--------- 73 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS---------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh---------
Confidence 34568999999999999999999998764322 1222333333344444 44 5789999999654322
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....++..+|++++|+|+++..+... ..++..+.... ...|+++|+||+|+....
T Consensus 74 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 74 --ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERK 129 (181)
T ss_dssp --CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGC
T ss_pred --hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhc
Confidence 22356788999999999984322221 23444444432 237999999999987643
No 21
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=116.82 Aligned_cols=134 Identities=19% Similarity=0.112 Sum_probs=74.0
Q ss_pred CCCcccCCCcccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCC
Q 043441 1 MGGSAIDDDWELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPG 78 (173)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG 78 (173)
||..........+....+..+|+++|.+|+|||||++.+++.. +.....+. +.......... .+. .+.+|||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPT--AFDNFSAVVSV-DGRPVRLQLCDTAG 77 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC---------CC--SSEEEEEEEEE-TTEEEEEEEEECCC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCc--ccceeEEEEEE-CCEEEEEEEEECCC
Confidence 4444433334445556778999999999999999999999876 32222221 11111122333 443 677999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....... ...++..+|++++|+|+++..+.... .+++.+....+ ..|+++|+||+|+...
T Consensus 78 ~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 78 QDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED 139 (201)
T ss_dssp STTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC
T ss_pred CHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc
Confidence 8764322 22467789999999999844332221 35555555432 3799999999998753
No 22
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=1.8e-17 Score=129.22 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=85.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
++|+++|.+|+|||||+|.|++....... ..++.|.........+ .+..+.+|||||+.... .+.....+...+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 57999999999999999999987642222 2345565555666666 78899999999987531 11123345555666
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+++++|++++|+|+++.++..+....+++++. ..|+++|+||+|...
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR 124 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcc
Confidence 78899999999999878888776666666542 278999999999753
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.75 E-value=6.1e-18 Score=115.04 Aligned_cols=123 Identities=13% Similarity=0.026 Sum_probs=77.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||+|++++...........+.+.......... ....+.+|||||+... ...
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~ 71 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN-ELHKFLIWDTAGLERF-----------RAL 71 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT-EEEEEEEEEECCSGGG-----------GGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-eEEEEEEEcCCCchhh-----------hcc
Confidence 3458999999999999999999998764222222222222222222211 2357899999997532 122
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...++..+|++++|+|+++..+... ..+++.+..... ...|+++|+||+|+....
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGC
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccc
Confidence 2345678899999999984433222 345555555322 236899999999997643
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.8e-17 Score=112.23 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=76.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
+...+|+++|.+|+|||||+|++++......... ...+.......... .+ ..+.+|||||... +.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI-STVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCC-CCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcC-CceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 4568999999999999999999998664222211 11222222222233 44 3789999999653 22
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....++..+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+....
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHER 132 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCC
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCccc
Confidence 33445778899999999998433222 13455555554332 37999999999998653
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=7.8e-18 Score=117.29 Aligned_cols=122 Identities=13% Similarity=0.020 Sum_probs=77.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||+|+|++...........+.+.......... ....+.+|||||.... ...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~ 88 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERF-----------HSL 88 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGG-----------GGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhh-----------Hhh
Confidence 4568999999999999999999998763222222222222222222221 3457999999996532 112
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..++++++|+|+++..+... ..+++.+.+.... ..|+++|+||+|+...
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSDI 143 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccc
Confidence 2345678899999999984432222 3445555443222 3799999999999753
No 26
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=118.26 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=76.0
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~ 90 (173)
+.......+|+++|.+|+|||||+|+|++........ ...+.......... .+ ..+.+|||||...
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~--------- 87 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVEL-RGKKIRLQIWDTAGQER--------- 87 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGG---------
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEEE-CCeEEEEEEEeCCCcHH---------
Confidence 4445567889999999999999999999876422221 12222233333333 33 4789999999543
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+......++..+|++++|+|+++..+... ..+++.+...... ..|+++|+||+|+....
T Consensus 88 --~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 88 --FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDR 147 (192)
T ss_dssp --GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGC
T ss_pred --HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccccc
Confidence 11222344556799999999984433222 3444555544322 37899999999987643
No 27
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=3.4e-17 Score=111.50 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=80.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|++++.... . ...|.........+ .+..+.+|||||.... ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~ 67 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-T----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPY 67 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-C----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-C----cCCcCccceEEEEE-CCEEEEEEECCCChhh-----------hHH
Confidence 45689999999999999999999876532 1 12233334444555 6789999999997532 223
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|+|+++..+... ..+++....... ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 3467789999999999985543322 223333333221 23799999999999865
No 28
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.74 E-value=5.2e-17 Score=114.18 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
+...+|+++|.+|+|||||+++|++......... ..+.......... .+ ..+.+|||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYIS--TIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI--------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCC--SSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--cccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH---------
Confidence 4468999999999999999999998664222211 1222222223333 33 37899999997654322
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...+++.+|++++|+|+++..+... ..+++.+...... ..|+++|+||+|+....
T Consensus 74 --~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 74 --TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp --CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTC
T ss_pred --HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccc
Confidence 2356788999999999984322221 3344445444322 37899999999998653
No 29
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=4.3e-17 Score=114.32 Aligned_cols=129 Identities=17% Similarity=0.110 Sum_probs=74.7
Q ss_pred ccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHH
Q 043441 11 ELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~ 90 (173)
.+.....+..+|+++|.+|+|||||+|+|++.... ....+.............. ....+.+|||||.......
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----- 88 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGK-DEFHLHLVDTAGQDEYSIL----- 88 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC-----CEEEEEEEECCCCTTCCC-----
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECC-EEEEEEEEECCCccchHHH-----
Confidence 33334467889999999999999999999987642 2222211111122222222 4457899999997754322
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...++..+|++++|+++++..+... ..+++.+..... ....|+++|+||+|+....
T Consensus 89 ------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~ 145 (201)
T 3oes_A 89 ------PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPER 145 (201)
T ss_dssp ------CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGC
T ss_pred ------HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcccc
Confidence 2256778999999999984322111 233333332211 1236899999999987554
No 30
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.74 E-value=1.8e-17 Score=114.47 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=78.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
+...+|+++|.+|+|||||+|.+++........ ...+.......... .+ ..+.+|||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSN--HTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC--CCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 456899999999999999999999766422211 11222222233333 34 4789999999553 23
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....++..+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence 34456788999999999998432222 13444444544322 3799999999998754
No 31
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=115.65 Aligned_cols=123 Identities=18% Similarity=0.114 Sum_probs=76.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....+|+++|.+|+|||||+|+|++...........+.+.......... ....+.+|||||......
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~----------- 89 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT-AAVKAQIWDTAGLERYRA----------- 89 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT-EEEEEEEEEESCCCTTCT-----------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCCchhhhh-----------
Confidence 34568999999999999999999998664322222222222222222211 235789999999875421
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+|+++..+.. ...+++.+..... ...|+++|+||+|+...
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGG
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccc
Confidence 1124566889999999998432211 1233333433221 23789999999999764
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=7.3e-18 Score=114.54 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=75.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+|+++|.+|+|||||++++++...........+.+... ..... .+ ..+.+|||||.... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~D~~G~~~~-----------~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT--QRVTI-NEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEE-TTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEEEE-CCEEEEEEEEECCCChhh-----------hhh
Confidence 4689999999999999999999766422222222222222 22223 33 37899999996532 112
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|+|+++..+... ..+++.+...... ..|+++|+||+|+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 2345678899999999984322221 3444444444322 3789999999999764
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=114.85 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=80.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||+|+|++....... ....+.......... .+ ..+.+|||||.....
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~---------- 79 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR---------- 79 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC----------
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh----------
Confidence 345689999999999999999999986642222 222333333344444 44 478999999965422
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....+++.+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+....
T Consensus 80 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 80 -TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp -TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTC
T ss_pred -hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccccccc
Confidence 12224567889999999998432211 23455555554332 37999999999998654
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=8.2e-18 Score=114.29 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=75.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+..+|+++|.+|+|||||+++|++...........+.+.......... ....+.+|||||.... ....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT-EEEEEEEEEECCSGGG-----------GGGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC-EEEEEEEEeCCCcHHh-----------hhhh
Confidence 457999999999999999999997653222212222222222222211 2357899999996532 1222
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|+++++..+... ..++..+...... ..|+++|.||+|+...
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence 345678899999999984422221 3344444443222 3789999999998754
No 35
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=3.7e-17 Score=120.17 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC----CccceeeEEEEEEee-CC--ceEEEEeCCCCCCCCCCc---H
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGS---E 87 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~v~DtpG~~~~~~~~---~ 87 (173)
...+|+++|.+|+|||||+|+|++...+...... ...|........... .+ ..+.+|||||+.+...+. .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3578999999999999999999988766544210 022222222222221 23 389999999997654332 2
Q ss_pred HHH----HHHHHHHHh---------ccCCceEEEEEeecCC-CCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 88 FVG----MEIVKCIGL---------AKDGIHAVLVGFSVRS-RFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 88 ~~~----~~~~~~~~~---------~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+. .++..++.. ...++|+++++++.+. .+...+..+++.+.+ ..|+++|+||+|++..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH
Confidence 222 111222221 1234788888886653 577777776666554 2899999999999864
No 36
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=2.1e-17 Score=114.77 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=77.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
..+..+|+++|.+|+|||||+|+|++.......... ............ .+ ..+.+|||||... +
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 82 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT--IGVDFRERAVDI-DGERIKIQLWDTAGQER-----------F 82 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCC--CSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------H
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC--cceEEEEEEEEE-CCEEEEEEEEECCCchh-----------h
Confidence 345689999999999999999999976542222111 122222223333 33 4789999999432 2
Q ss_pred H-HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 V-KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~-~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
. .....+++.+|++++|+|+++..+.. ...+++.+.+.... ...|+++|+||+|+...
T Consensus 83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG
T ss_pred hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 2 23345677889999999998432222 23455555554321 23789999999999754
No 37
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=2.3e-16 Score=109.03 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=80.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||+|++++.. . ... ..|.......... ++..+.+|||||.. ++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-V-DTI---SPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-C-SSC---CCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-C-Ccc---cccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 567999999999999999999999866 2 221 1233333444555 67899999999964 23444
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|+|+++..+.. ...+++.+.... ....|+++|+||+|+...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQ--DCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 456788999999999998543322 222333333322 123799999999999865
No 38
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=7.7e-17 Score=111.17 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=77.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....+|+++|.+|+|||||+|+|++... .......+ ........ ++..+.+|||||.... ..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~ 80 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG----SNVEEIVI-NNTRFLMWDIGGQESL-----------RS 80 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSS----SSCEEEEE-TTEEEEEEEESSSGGG-----------TC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCc----eeeEEEEE-CCEEEEEEECCCCHhH-----------HH
Confidence 35678999999999999999999998764 11111112 12233444 6789999999997542 22
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+|+++..+... ..+++.+.... ....|+++|+||+|+...
T Consensus 81 ~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 81 SWNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp GGGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 23457788999999999985533332 22333333322 133799999999999764
No 39
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.72 E-value=1.4e-16 Score=111.15 Aligned_cols=124 Identities=14% Similarity=0.050 Sum_probs=79.4
Q ss_pred cCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 12 LTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
.+.......+|+++|.+|+|||||++.|++......... .|.......+.. .+..+.+|||||...
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---~t~~~~~~~~~~-~~~~~~i~Dt~G~~~---------- 75 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFEK-GRVAFTVFDMGGAKK---------- 75 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---CCSSEEEEEEEE-TTEEEEEEEECCSGG----------
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---cccceeEEEEEe-CCEEEEEEECCCCHh----------
Confidence 344567788999999999999999999998774321212 222233334444 778999999999753
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc---------ccceEEEEEeCCCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK---------VFDYMIVVFTGGDELED 152 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~iv~tk~D~~~~ 152 (173)
+......+++.+|++++|+|+++..+... ..+++.+..... ...|+++|+||+|+...
T Consensus 76 -~~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 76 -FRGLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp -GGGGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred -HHHHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 22333467889999999999985433222 222333332221 14799999999999876
No 40
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=3.5e-17 Score=111.03 Aligned_cols=119 Identities=19% Similarity=0.059 Sum_probs=75.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
+...+|+++|.+|+|||||+|+|++...........+ .......... .+ ..+.+|||||.......
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------- 70 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--VDFLERQIQV-NDEDVRLMLWDTAGQEEFDAI--------- 70 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--SSEEEEEEEE-TTEEEEEEEECCTTGGGTTCC---------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceE--EEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHH---------
Confidence 3468999999999999999999998653221111111 1222222333 33 47899999996543221
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+++++..+.. ...+++.+.... ...|+++|+||+|+...
T Consensus 71 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 71 --TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG
T ss_pred --HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc
Confidence 224566889999999998432221 134444454443 23799999999998764
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.72 E-value=4.3e-17 Score=113.09 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=78.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC-----------CceEEEEeCCCCCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------GQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~v~DtpG~~~~~~ 84 (173)
.....+|+++|.+|+|||||+|+|++...........+.+.. ....... . ...+.+|||||...
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~--- 82 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLER--- 82 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGG---
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEEe-cCCcccccccCcEEEEEEEeCCCcHH---
Confidence 345689999999999999999999976532221111111111 0122222 3 24799999999742
Q ss_pred CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 85 GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+......+++.+|++++|+|+++..+... ..+++.+...... ...|+++|+||+|+...
T Consensus 83 --------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 83 --------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp --------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGG
T ss_pred --------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 23344567889999999999984322222 3444444443221 23799999999998764
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.72 E-value=4.3e-17 Score=115.60 Aligned_cols=125 Identities=14% Similarity=0.034 Sum_probs=76.9
Q ss_pred ccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHH
Q 043441 11 ELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~ 90 (173)
+.+.......+|+++|.+|+|||||++.+++.... ....+.............. ....+.+|||||....
T Consensus 19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------- 88 (214)
T 3q3j_B 19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEE-QRVELSLWDTSGSPYY-------- 88 (214)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC---CEEEEEEEEECCSGGG--------
T ss_pred cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECC-EEEEEEEEECCCCHhH--------
Confidence 33444556789999999999999999999886632 2212211111111112211 3347899999996532
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
......++..+|++++|+|+++.-+... ..+++.+..... ..|+++|.||+|+..
T Consensus 89 ---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 89 ---DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp ---TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred ---HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 2233457889999999999985433332 355555655432 379999999999875
No 43
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=1.2e-16 Score=112.98 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=76.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||++++++... .....+ .+ .......... +..+.+|||||... +.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~--~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTS--IT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCC--CS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCC--cc--eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence 4568999999999999999999997663 222211 11 2222344411 46899999999652 22
Q ss_pred H-HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc----cccceEEEEEeCCCCCCCC
Q 043441 95 K-CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK----KVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~-~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~iv~tk~D~~~~~ 153 (173)
. ....+++.+|++++|+|++ .+........+++.+.+.. ....|+++|+||+|+....
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 2 3334577899999999998 4333233444444443221 2237999999999998653
No 44
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.72 E-value=8.5e-17 Score=112.42 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=77.9
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
+.......+|+++|.+|+|||||++.+.+....... .....+...............+.+|||||..........
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---- 88 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD---- 88 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGG-GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce-eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----
Confidence 344567789999999999999999999885432111 111111111111111114468999999997754222100
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|+|+++........+.+++.+........|+++|.||+|+...
T Consensus 89 ----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 89 ----YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp ----HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ----cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 01345578999999999866334445555666654322234799999999998753
No 45
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.5e-17 Score=112.07 Aligned_cols=123 Identities=19% Similarity=0.098 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+..+|+++|.+|+|||||+|++++...........+.+. ........ ....+.+|||||.... . ...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~~~Dt~G~~~~----~-------~~~ 68 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDK-SICTLQITDTTGSHQF----P-------AMQ 68 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETT-EEEEEEEEECCSCSSC----H-------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECC-EEEEEEEEECCCchhh----H-------HHH
Confidence 357899999999999999999998663222211111111 11111111 2236899999997653 1 111
Q ss_pred HhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..++..+|++++|+++++..+.. ...+++.+.+........|+++|+||+|+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR 125 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence 23344579999999998432222 134555555543322237899999999987543
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=1.2e-17 Score=114.55 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=76.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+..+|+++|.+|+|||||+|++++....... ....+.......... .+ ..+.+|||||.....
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~----------- 77 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR----------- 77 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------
Confidence 35589999999999999999999976532221 112222222333333 34 378999999965321
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....++..+|++++|+|+++..+.. ...++..+...... ..|+++|+||+|+....
T Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGC
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccC
Confidence 11223455789999999998432211 23455555544332 37899999999987653
No 47
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=3.6e-17 Score=113.76 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=75.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
..+..+|+++|.+|+|||||++.|++...........+.+ ........ .+ ..+.+|||||.......
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-------- 86 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNI-DGKQIKLQIWDTAGQESFRSI-------- 86 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEE-TTEEEEEEEECCTTGGGTSCC--------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEE-CCEEEEEEEEECCCchhhhhh--------
Confidence 3566799999999999999999999766422221111222 22223333 33 47899999996543221
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+|+++..+... ..+++.+...... ..|+++|+||+|+...
T Consensus 87 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 87 ---TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESR 141 (191)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCc
Confidence 2245667899999999984322221 3444444443222 3789999999998754
No 48
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=2.1e-16 Score=109.65 Aligned_cols=119 Identities=16% Similarity=0.056 Sum_probs=79.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..+..+|+++|.+|+|||||+|.|++.... ... ..|.......... .+..+.+|||||.. ++..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~-----------~~~~ 82 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFN-EDM---IPTVGFNMRKITK-GNVTIKLWDIGGQP-----------RFRS 82 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSC---CCCCSEEEEEEEE-TTEEEEEEEECCSH-----------HHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCC-Ccc---CCCCceeEEEEEe-CCEEEEEEECCCCH-----------hHHH
Confidence 345689999999999999999999976532 111 1233333334444 67899999999954 2333
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+|+++.-+.. ...+++.+.... ....|+++|+||+|+...
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 3345667899999999998432222 233334444332 133799999999999865
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=7.1e-17 Score=110.56 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=77.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||+|++++.......... ............ .+ ..+.+|||||... +.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHT--IGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FR 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----C--CSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--eeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hh
Confidence 34589999999999999999999976532111111 122222233333 44 3789999999543 23
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcc--cccceEEEEEeCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGK--KVFDYMIVVFTGGDELE 151 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~ 151 (173)
.....++..+|++++|+++++..+.. ...+++.+...... ....|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 34456788899999999998433222 13455555554331 12369999999999873
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.72 E-value=4.6e-17 Score=110.65 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
...+|+++|.+|+|||||+|++++........ ...+.......... .+ ..+.+|||||.......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~---------- 68 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI---------- 68 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC----------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh----------
Confidence 35789999999999999999999766322111 11222222233333 33 47899999996543222
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
...++..+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+..
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 69 -TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMET 122 (170)
T ss_dssp -CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTT
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCc
Confidence 224566889999999998432222 13455555554322 379999999999843
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=4.2e-17 Score=110.47 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+..+|+++|.+|+|||||+|++++.... ....+...... ...... .+ ..+.+|||||.... ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSY--RKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEE--EEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEE--EEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence 4589999999999999999999976632 22111111111 122233 33 37899999996542 12
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....++..+|++++|+++++..+.. ...+++.+.+.... ...|+++|+||+|+....
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccC
Confidence 2223455679999999998432222 23444555554331 237999999999987643
No 52
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.72 E-value=1.2e-16 Score=116.34 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=79.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGMEIVKCI 97 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~--~~~~~~~~~~ 97 (173)
++|+++|.+|+|||||+|+|+|...... ..++.|.......... .+..+.+|||||+.+...... ...+.+.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~--~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE--ECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc--CCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 5899999999999999999999874322 2345566666666666 778999999999987643110 1111222111
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
. ....+|++++|+|+++ . .....+..++.+ ...|+++|+||+|+...
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAEH 125 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHHH
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCCc
Confidence 1 1268999999999983 2 112233333322 23799999999998754
No 53
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=109.53 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+..+|+++|.+|+|||||+|+|++...... ....+.+.... .... .+ ..+.+|||||.... +..
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~--~~~~-~~~~~~~~~~D~~g~~~~---------~~~ 68 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYER--TLTV-DGEDTTLVVVDTWEAEKL---------DKS 68 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEE--EEEE-TTEEEEEEEECCC----------------C
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEE--EEEE-CCEEEEEEEEecCCCCcc---------chh
Confidence 3468999999999999999999998764222 22223333222 2233 33 36889999997642 111
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....+++.++++++|+++++..+... ..++..+.+... ....|+++|+||+|+....
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~ 127 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCR 127 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTC
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhcccc
Confidence 222346778899999999984322221 233333433211 1237899999999998654
No 54
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=4.9e-17 Score=114.29 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=78.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||++++++.... .... ...+.......... ++ ..+.+|||||... +.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~-~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 89 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQG-ATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FR 89 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCC-CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC-CCCC-CccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 44689999999999999999999876532 2211 11222222233333 44 3789999999542 33
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....+++.+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+...
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence 34556788999999999998432222 13455555544322 3789999999998754
No 55
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=9.6e-18 Score=131.40 Aligned_cols=126 Identities=22% Similarity=0.153 Sum_probs=82.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
...++|+|+|.+|+|||||+|+|++..... -...++.|.........+ .+..+.+|||||+.... +....++...
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~ 95 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQ 95 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHH
Confidence 345799999999999999999999866421 123345566665666655 67799999999987422 2234566666
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+..+++.+|++|+|+|+.+.++..+..+.+.+++ ...|+++|+||+|+...
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC-----
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhh
Confidence 6677788999999999987888888776666654 23789999999998754
No 56
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=1.4e-16 Score=109.63 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
...+|+++|.+|+|||||++++++... .....+...... ...... .+ ..+.+|||||........
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~--~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--------- 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTF--TKLITV-NGQEYHLQLVDTAGQDEYSIFP--------- 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEE--EEEEEE-TTEEEEEEEEECCCCCTTCCCC---------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccE--EEEEEE-CCEEEEEEEEeCCCchhhhHHH---------
Confidence 458999999999999999999996553 222222211121 222233 44 467899999987643222
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..+++.+|++++|+++++.-+... ..+++.+.+.... ...|+++|+||+|+....
T Consensus 72 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 72 --QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp --GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTC
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcc
Confidence 246778999999999984322221 2344444443222 237999999999987554
No 57
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=115.00 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=76.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||++.+++.... ....+ ............. .+ ..+.+|||||... +
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~ 91 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGS-TIGVDFTMKTLEI-QGKRVKLQIWDTAGQER-----------F 91 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG-----------G
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCC-CcceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------H
Confidence 345689999999999999999999876531 11111 1111222223333 44 4889999999653 2
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
......+++.+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+...
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 92 RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccc
Confidence 233345677899999999998432221 13455555544322 3799999999999764
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=7.3e-17 Score=113.78 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=76.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||+++|++........ ...+.......... .+ ..+.+|||||.......
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-------- 85 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI-------- 85 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSS--CCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC--------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH--------
Confidence 4567899999999999999999999766322211 12222233333444 44 47899999996543221
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
...++..+|++++|+|+++..+.. ...+++.+...... ..|+++|+||+|+.
T Consensus 86 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 138 (213)
T 3cph_A 86 ---TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 138 (213)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence 224567889999999998432222 13455555554332 37999999999984
No 59
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.1e-17 Score=116.30 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=78.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|.|++...........+.+.......... ....+.+|||||.. ++...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~-----------~~~~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQE-----------RYRTI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHH-----------HCHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChH-----------HHHHH
Confidence 4568999999999999999999997553222111112222222222222 44579999999932 33444
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
...++..+|++++|+|+++.-+.+ ...+++.+...... ..|+++|+||+|+....
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEER 144 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGC
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccc
Confidence 456778899999999998432222 13455555543222 37999999999987543
No 60
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=1.9e-17 Score=128.99 Aligned_cols=123 Identities=21% Similarity=0.143 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
++|+++|.+|+|||||+|+|++...... ...++.|.........+ .+..+.+|||||+..... ....++...+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDE---PFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcch---hHHHHHHHHHHH
Confidence 6899999999999999999998664221 22345555555555555 677899999999874322 145566666667
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+++.+|++++|+|+.+.++..+..+.+.++. ...|+++|+||+|+...
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC---
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc
Confidence 7788999999999987888777655554432 23799999999998754
No 61
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=5.6e-17 Score=111.39 Aligned_cols=124 Identities=11% Similarity=0.079 Sum_probs=72.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||++.+++.......... .+........... ....+.+|||||... +
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~ 71 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQER-----------F 71 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--cceEEEEEEEEEcCCcEEEEEEEECCCChH-----------h
Confidence 345689999999999999999999986632211111 1112222223321 235789999999543 2
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
......++..+|++++|+|+++..+.. ...+++.+...... ....|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 333446788999999999998432222 23445555544321 123699999999998643
No 62
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=116.63 Aligned_cols=119 Identities=17% Similarity=0.119 Sum_probs=70.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||+|+|++...........+.+... ..... .+ ..+.+|||||....
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~----------- 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIV-DGERTVLQLWDTAGQERF----------- 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEE-TTEEEEEEEEECTTCTTC-----------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEE-CCEEEEEEEEECCCCcch-----------
Confidence 3567899999999999999999999766321111111222222 22222 33 46899999997642
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
......++..+|++++|+|+++..+... ..+++.+...... ..|+++|+||+|+.
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence 1122234556799999999984332221 3445555544222 37999999999986
No 63
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.71 E-value=3.3e-17 Score=116.44 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=79.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-ccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+..+|+|+|.+|+|||||++.++... |.....+. +............ ....+.+|||+|.... ..
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~-~~v~l~iwDtaGqe~~-----------~~ 77 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLED-RTIRLQLWDTAGLERF-----------RS 77 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSS-CEEEEEEECCSCTTTC-----------GG
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecc-eEEEEEEEECCCchhh-----------hh
Confidence 345799999999999999999998655 32222221 1111111111111 2246889999997653 22
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
....+++.++++++|++.++.-+-+ -..+++.+.+..+.. .|++||.||+|+.+.+..+.++
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e 140 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEE 140 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHH
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHH
Confidence 2235678999999999998443333 246666666665544 7999999999987654444443
No 64
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=3.1e-16 Score=107.98 Aligned_cols=117 Identities=13% Similarity=0.071 Sum_probs=76.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||++++++... ..... |.......... .+..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKP----TIGFNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECS----STTCCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCC----cCccceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 5679999999999999999999997654 11111 11122233444 678999999999875322 2
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+|+++..+.. ...+++.+.... ....|+++|+||+|+...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMS--TASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHH--HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 235678899999999998553332 223334444332 133799999999998764
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.71 E-value=1.4e-17 Score=116.90 Aligned_cols=121 Identities=18% Similarity=0.077 Sum_probs=56.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCcccee--eEEEEEEeeC----CceEEEEeCCCCCCCCCCcHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA-FKSRASSSGVTST--CEMQRTVLKD----GQVVNVIDTPGLFDFSAGSEF 88 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~--~~~~~~~~~~----~~~~~v~DtpG~~~~~~~~~~ 88 (173)
.....+|+++|.+|+|||||+++|++... +... ...|.. ........ . ...+.+|||||..
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~-------- 84 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKD---YAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSD-------- 84 (208)
T ss_dssp EEEEEEEEEC-------------------------------------CEEEEC-TTSSEEEEEEEEETTTTH--------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCC---CCCccceEEEEEEEEE-CCcccEEEEEEEECCCcH--------
Confidence 34568999999999999999999998621 2111 112222 22233333 3 3479999999964
Q ss_pred HHHHHHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcc-cccceEEEEEeCCCCCC
Q 043441 89 VGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGK-KVFDYMIVVFTGGDELE 151 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~~iv~tk~D~~~ 151 (173)
++......++..+|++++|+|+++..+.. ...+++.+...... ....|+++|+||+|+..
T Consensus 85 ---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 85 ---LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp ---HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred ---HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 34445567888999999999998443222 23455555544320 02379999999999986
No 66
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.71 E-value=1.5e-16 Score=107.60 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|.+|+|||||++++++.... .. ..|.......... .+..+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CC----CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cc----cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 37999999999999999999875532 21 1232233334444 678999999999753 2233345
Q ss_pred ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
++..+|++++|+|+++.-+.. ...+++.+.... ....|+++|+||+|+...
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 678899999999998442222 222344444332 123799999999999765
No 67
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=1.7e-16 Score=116.61 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=82.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~--~~~~~~~~~~ 96 (173)
..+|+++|.+|+|||||+|+|++... ..+ ..++.|.......... .+..+.+|||||+.+..... ....+.+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~-~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVG-NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEE-ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47899999999999999999999873 222 2345566665566666 67789999999998765211 1112222221
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
. ...+.+|++++|+|++ .. .....+...+.+. ..|+++|+||+|+...
T Consensus 80 ~-~~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-----GIPCIVALNMLDIAEK 127 (274)
T ss_dssp H-HHHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-----TCCEEEEEECHHHHHH
T ss_pred H-HhhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-----CCCEEEEEECccchhh
Confidence 1 1346889999999998 32 2233444444443 3799999999998753
No 68
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=5.2e-17 Score=112.04 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=75.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
..+..+|+++|.+|+|||||+|+|++.... ....+. +.......... .+ ..+.+|||||.... .
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t--~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----~------ 80 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT--KADSYRKKVVL-DGEEVQIDILDTAGQEDY----A------ 80 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTT--CCEEEEEEEEE-TTEEEEEEEEECCCTTCC----H------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCc--cceEEEEEEEE-CCEEEEEEEEECCCCccc----H------
Confidence 346689999999999999999999976632 221111 11111222333 34 37899999997642 1
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....++..+|++++|+++++..+.. ...+++.+...... ...|+++|+||+|+....
T Consensus 81 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~ 139 (187)
T 2a9k_A 81 -AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKR 139 (187)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGC
T ss_pred -HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccC
Confidence 11223445679999999998432211 23455555554332 237999999999987643
No 69
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=1.2e-16 Score=108.36 Aligned_cols=120 Identities=16% Similarity=-0.022 Sum_probs=63.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+|+++|.+|+|||||+|++++...... .+...+.......... ....+.+|||||.... .....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDG-EEASLMVYDIWEQDGG-----------RWLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEETT-EEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC--CCccccceEEEEEECC-EEEEEEEEECCCCccc-----------hhhhh
Confidence 47899999999999999999997653211 1222222222222211 2347889999996642 22233
Q ss_pred hccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.++..++++++|+++++.-+... ..++..+.+... ....|+++|+||+|+....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSC
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccccc
Confidence 46678899999999984322111 233333333211 1237999999999998654
No 70
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.2e-17 Score=114.43 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=75.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||+++|++.......... .+.......+.. .+ ..+.+|||||......
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 77 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKST--IGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA--------- 77 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC---------
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--ccceeEEEEEEE-CCEEEEEEEEECCCccchhh---------
Confidence 355689999999999999999999986642221111 122222223333 44 4789999999765322
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....+++.+|++|+|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 78 --~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 78 --ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHL 133 (223)
T ss_dssp --CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG
T ss_pred --hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 22356788999999999984433222 3444445443222 3789999999998754
No 71
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.70 E-value=2.8e-16 Score=119.68 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=85.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCc--c----------------------------------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSG--V---------------------------------------- 54 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~--~---------------------------------------- 54 (173)
...+.|+|+|.+|||||||+|+|+|...+..+..... .
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3556999999999999999999999765333321110 0
Q ss_pred ----------ceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHH
Q 043441 55 ----------TSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEE 122 (173)
Q Consensus 55 ----------t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~ 122 (173)
........+..+....+.+|||||+..... ........+...+..++.++|+++++++.. .......
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~ 190 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATS 190 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGC
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCH
Confidence 000001111121345789999999987532 223445566777777888999999999875 2222223
Q ss_pred HHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 123 AALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.+++.+...-.. ..++++|+||+|++...
T Consensus 191 ~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 191 DAIKISREVDPS--GDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHHSCTT--CTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHhccc--CCCEEEEEeCCccCCCc
Confidence 445555554222 26899999999998754
No 72
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.70 E-value=9.2e-17 Score=111.54 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=78.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
......+|+++|.+|+|||||+|+|++...+.... ..|.......... ++..+.+|||||.....
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~----------- 81 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR----------- 81 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------
Confidence 34567899999999999999999999876322222 2333344445555 67899999999976531
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc-cccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK-KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~iv~tk~D~~~~ 152 (173)
.....++..+|++++|+|+++..+... ..++..+...... ....|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 222356778899999999984321111 1333333322110 023799999999999865
No 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=114.89 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=73.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
+...+|+++|.+|+|||||+|.|++......... ..+.......... .+ ..+.+|||||.. ++.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~-----------~~~ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNH--TIGVEFGSRVVNV-GGKTVKLQIWDTAGQE-----------RFR 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHH-----------HHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCC--cccceeEEEEEEE-CCeeeEEEEEcCCCcH-----------hHH
Confidence 4568999999999999999999998664222111 1121222223333 34 578999999943 222
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....++..+|++++|+|+++..+.. ...++..+...... ..|+++|+||+|+....
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~ 146 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPER 146 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGGC
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccccc
Confidence 22334677889999999998432222 13444444443322 37899999999987543
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.70 E-value=6.2e-17 Score=114.74 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=76.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||+|+|++.... ............. .......+ ..+.+|||||.........
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------ 79 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHP-VTFLDDQGNVIKFNVWDTAGQEKKAVLKD------ 79 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEE-EEEEBTTSCEEEEEEEEECSGGGTSCCCH------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEE-EEEEeCCCcEEEEEEEecCCchhhchHHH------
Confidence 345689999999999999999999976632 2211211111111 11111122 4689999999765332222
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..+|++++|+|+++..+.. ...++..+....... .|+++|+||+|+...
T Consensus 80 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 80 -----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR 132 (218)
T ss_dssp -----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC--
T ss_pred -----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 3456789999999998543322 235556666654433 799999999998765
No 75
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.70 E-value=7.1e-17 Score=111.27 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=58.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||++.+++.... ... .+..+.......... .+ ..+.+|||||... +.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 71 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN-STF-ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FR 71 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CH-HHHHCEEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hh
Confidence 34689999999999999999999876531 111 111222222233333 44 5789999999653 22
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....+++.+|++++|+|+++..+... ..+++.+...... ..|+++|+||+|+....
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKR 129 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCC
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccC
Confidence 334467889999999999984322221 2344444443222 37999999999997643
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.70 E-value=2e-16 Score=110.40 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=71.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC----------------------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---------------------------- 68 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------------------- 68 (173)
....+|+++|.+|+|||||+|+|++.......... ............ .+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTT--IGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCC--CSCEEEEEEEET-TC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcc--ccceeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence 45689999999999999999999987632111111 111111112222 11
Q ss_pred -----------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccc
Q 043441 69 -----------QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKV 136 (173)
Q Consensus 69 -----------~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~ 136 (173)
..+.+|||||...... ....+++.+|++++|+|+++..+... ..++..+.+..
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---- 146 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---- 146 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----
Confidence 6789999999654321 12245668899999999984322222 23344443331
Q ss_pred cceEEEEEeCCC
Q 043441 137 FDYMIVVFTGGD 148 (173)
Q Consensus 137 ~~~~~iv~tk~D 148 (173)
..|+++|+||+|
T Consensus 147 ~~piilv~NK~D 158 (208)
T 3clv_A 147 NYIIILVANKID 158 (208)
T ss_dssp CCEEEEEEECTT
T ss_pred CCcEEEEEECCC
Confidence 279999999999
No 77
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=112.84 Aligned_cols=123 Identities=19% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
...+..+|+++|.+|+|||||+|.+++... .....+..... ....... .+ ..+.+|||||.... .
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~----~----- 76 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADS--YRKKVVL-DGEEVQIDILDTAGQEDY----A----- 76 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEE--EEEEEEE-TTEEEEEEEEECCCTTCC----H-----
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceE--EEEEEEE-CCEEEEEEEEcCCChhhh----H-----
Confidence 345678999999999999999999997663 22222111111 1222333 44 37899999997653 1
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....++..+|++++|+++++.-+.. ...++..+...... ...|+++|+||+|+....
T Consensus 77 --~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~ 135 (206)
T 2bov_A 77 --AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKR 135 (206)
T ss_dssp --HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGC
T ss_pred --HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccc
Confidence 11223445679999999998432221 13444445444321 237999999999997653
No 78
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.70 E-value=1.6e-16 Score=108.84 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=76.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
..+..+|+++|.+|+|||||++.+++...........+ .......... .+ ..+.+|||||.......
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~------- 72 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM------- 72 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT-------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEe-CCCCEEEEEEEECCCCccccch-------
Confidence 34568999999999999999999998653211111111 1222233333 33 58999999997653221
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccce-EEEEEeCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDY-MIVVFTGGDELED 152 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+|+++..+.. ...+++.+..........| +++|+||+|+...
T Consensus 73 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 73 ----LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp ----HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred ----hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 123466889999999998433322 1345555554322111244 8999999998754
No 79
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=113.09 Aligned_cols=135 Identities=19% Similarity=0.112 Sum_probs=75.4
Q ss_pred CcccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCc
Q 043441 9 DWELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGS 86 (173)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~ 86 (173)
+...+.......+|+++|.+|+|||||++.+++...........+..... ..+.. ++ ..+.+|||||....
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~l~i~Dt~g~~~~---- 85 (195)
T 3cbq_A 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYE--RRIMV-DKEEVTLVVYDIWEQGDA---- 85 (195)
T ss_dssp ---------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEE--EEEEE-TTEEEEEEEECCCCCSGG----
T ss_pred cccCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEE--EEEEE-CCEEEEEEEEecCCCccc----
Confidence 44445556678999999999999999999998644211111111112222 22233 33 36788999997642
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccH
Q 043441 87 EFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETL 157 (173)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 157 (173)
.. .+. ..+++.++++++|+|+++..+.. ...++..+...... ...|+++|.||+|+......+.
T Consensus 86 ~~---~~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~ 150 (195)
T 3cbq_A 86 GG---WLR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSL 150 (195)
T ss_dssp GH---HHH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCH
T ss_pred hh---hhH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCH
Confidence 11 111 23445679999999998432222 23444444443211 2379999999999976543333
No 80
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=2.5e-16 Score=117.49 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=83.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+|+++|.+|+|||||+|.+++...... ....+.|...........++..+.+|||||... ..........
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~~~ 74 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV------FMENYFTKQK 74 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHH------HHHHHHTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHH------HhhhhhhhHH
Confidence 457899999999999999999988632111 123445555555555543567899999999652 1111112333
Q ss_pred HhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
..+++++|++++|+|+++..+..+ ..+.+++.+........|+++|+||+|+..
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 456778999999999985544343 244455555432222379999999999986
No 81
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=9.5e-17 Score=111.83 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=76.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE-EEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
......+|+++|.+|+|||||++.+++... .....+ |..... ..... .+. .+.+|||||....
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~---t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------- 84 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVP---TVFENFSHVMKY-KNEEFILHLWDTAGQEEY--------- 84 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCC---CSEEEEEEEEEE-TTEEEEEEEEEECCSGGG---------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCC---eeeeeeEEEEEE-CCEEEEEEEEECCCcHHH---------
Confidence 345668999999999999999999998663 222111 211111 12222 443 5699999995532
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
......+++.+|++++|+|+++..+... ..+++.+..... ..|+++|+||+|+..
T Consensus 85 --~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 85 --DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK 141 (194)
T ss_dssp --TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred --HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 2333457889999999999984433222 344455554322 279999999999875
No 82
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=3.4e-17 Score=127.61 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
+...+++++|.+|+|||||+|+|++....... ...+.|.......... .+..+.+|||||+.......+.+ +.+...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETT-EKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCC-SHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchH-HHHHHH
Confidence 35689999999999999999999987642222 1223344433344455 77789999999986533211000 011100
Q ss_pred -HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 97 -IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 97 -~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
...+++.+|++++|+|+++..+..+..++..+.+. ..++++|+||+|+.+.+.
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcch
Confidence 11244567999999999988887777666655542 278999999999987643
No 83
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.70 E-value=1.4e-16 Score=110.40 Aligned_cols=117 Identities=13% Similarity=0.052 Sum_probs=79.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||+|++++.... ... .|.......... .+..+.+|||||.......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~----~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~----------- 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTV----PTVGVNLETLQY-KNISFEVWDLGGQTGVRPY----------- 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EEC----SSTTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcC----CCCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 56789999999999999999999876532 211 122223334445 6789999999998754322
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|+|+++.-+... ..+++.+.... ....|+++|+||+|+...
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 2246778999999999985433332 22334443332 123799999999999865
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=2.2e-16 Score=110.84 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||+|+|++....... ....+.......... .+ ..+.+|||||......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 72 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQS---------- 72 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH----------
Confidence 45689999999999999999999986632211 111222222223333 33 4789999999654321
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcc--cccceEEEEEeCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGK--KVFDYMIVVFTGGDELE 151 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~ 151 (173)
....++..+|++++|+|+++..+.. ...++..+...... ....|+++|+||+|+..
T Consensus 73 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 73 -LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp -SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred -hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 1234677899999999998432222 13455555554321 12379999999999874
No 85
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=8.5e-17 Score=126.01 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=88.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....+++++|.+|+|||||+|+|++....... ...+.|.......... .+..+.+|||||+.......+... .+..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e-~~~~ 268 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTE-KYSV 268 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCS-HHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHH-HHHH
Confidence 356789999999999999999999987543222 1223333333334445 777999999999865321110000 1111
Q ss_pred -HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHH
Q 043441 96 -CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLED 159 (173)
Q Consensus 96 -~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 159 (173)
....+++.+|++++|+|+++.+...+..++..+.+. ..|+++|+||+|+...+....++
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~ 328 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKE 328 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCSSHHHH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCCchHHHHH
Confidence 111245567999999999988888887777777652 27899999999998765333333
No 86
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=1.6e-16 Score=109.55 Aligned_cols=125 Identities=22% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~ 90 (173)
+....+..+|+++|.+|+|||||+|++++.... ....+...... ...... .+. .+.+|||||........
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~---- 83 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSY--LKHTEI-DNQWAILDVLDTAGQEEFSAMR---- 83 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEE--EEEEEE-TTEEEEEEEEECCSCGGGCSSH----
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCcccee--EEEEEe-CCcEEEEEEEECCCchhhHHHH----
Confidence 344566789999999999999999999976532 22222111111 222233 444 45679999966432211
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..+++.+|++++|+++++..+.. ...+++.+...... ...|+++|+||+|+....
T Consensus 84 -------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 84 -------EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLR 139 (183)
T ss_dssp -------HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTC
T ss_pred -------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhcc
Confidence 12344579999999998432222 13444444443222 236899999999987643
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=3.9e-16 Score=108.11 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=75.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||++++++.... ... .|.......... ++..+.+|||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTS----PTIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEE----CCSCSSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCc----CCCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 45689999999999999999999976643 111 122222233444 67899999999976432 12
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+|+++.-+... ..+++.+.... ....|+++|+||+|+...
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 2345678899999999985533332 22233333322 123799999999999764
No 88
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=1.1e-16 Score=108.20 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=73.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+..+|+++|++|+|||||+|++++.... ....+...+.. ...... .+ ..+.+|||||.... ..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~--~~~~~~-~~~~~~~~l~D~~G~~~~----~~------- 66 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFY--RKEIEV-DSSPSVLEILDTAGTEQF----AS------- 66 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEE--EEEEEE-TTEEEEEEEEECCCTTCC----HH-------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeE--EEEEEE-CCEEEEEEEEECCCchhh----HH-------
Confidence 3478999999999999999999976532 22112111111 222333 33 35899999997642 11
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
....++..++++++|+++++..+.. ...+++.+.+.... ...|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~ 124 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESER 124 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGC
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccc
Confidence 1123345669999999998432222 23444444444321 237999999999987543
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.69 E-value=1.3e-16 Score=110.24 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=75.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.....+|+++|.+|+|||||++.+++... .....+....... ...... ....+.+|||||.....
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~----------- 69 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYD----------- 69 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEE--EEEECSSCEEEEEEEEECCSGGGT-----------
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEE--EEEEECCEEEEEEEEECCCChhhh-----------
Confidence 34568999999999999999999998653 2221221111111 122221 22478999999965421
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.....++..+|++++|+|+++..+... ..+++.+.+..+ ..|+++|.||+|+..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 125 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence 122346788999999999984332222 244455554422 379999999999875
No 90
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=1.4e-16 Score=111.71 Aligned_cols=124 Identities=18% Similarity=0.090 Sum_probs=77.6
Q ss_pred ccCCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHH
Q 043441 11 ELTSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEF 88 (173)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~ 88 (173)
...++.....+|+++|.+|+|||||++.+++..... ...+....... ..... .+ ..+.+|||||....
T Consensus 17 ~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~------ 86 (201)
T 2gco_A 17 RGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYI--ADIEV-DGKQVELALWDTAGQEDY------ 86 (201)
T ss_dssp -----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCE--EEEEE-TTEEEEEEEECCCCSGGG------
T ss_pred CCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEE--EEEEE-CCEEEEEEEEECCCchhH------
Confidence 345556777899999999999999999999766422 21111111111 12233 33 37899999996532
Q ss_pred HHHHHHHHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 89 VGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
......++..+|++++|+|+++..+... ..+++.+.+... ..|+++|+||+|+...
T Consensus 87 -----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 87 -----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD 144 (201)
T ss_dssp -----TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC
T ss_pred -----HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC
Confidence 1222356788999999999984322222 345555554322 3799999999999865
No 91
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=2e-16 Score=124.13 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=68.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+.+|+++|.+|+|||||+|+|++....... ...+.|.......+.. .+..+.+|||||+.++....+ .......
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve---~~gi~~~ 306 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIE---HEGIRRS 306 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHH---HHHHHHH
Confidence 3467999999999999999999987532111 1233444444455556 788999999999976432111 1112233
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..++..+|++++|+|+++..+.........+.+.+. ..|+++|+||+|+....
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP---AAKFLTVANKLDRAANA 359 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEEEEEEECTTSCTTT
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCEEEEEECcCCCCcc
Confidence 457889999999999987666532212222222222 37999999999998764
No 92
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.4e-16 Score=109.67 Aligned_cols=118 Identities=17% Similarity=0.092 Sum_probs=77.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||++.+++... .....+...... ...... .+ ..+.+|||||......
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~--~~~~~~-~~~~~~~~i~D~~G~~~~~~---------- 81 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHY--AVSVTV-GGKQYLLGLYDTAGQEDYDR---------- 81 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCE--EEEEES-SSCEEEEEEECCCCSSSSTT----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccccee--EEEEEE-CCEEEEEEEEECCCCcchhH----------
Confidence 3567999999999999999999997653 222222111111 112232 33 4788999999875422
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+|+++..+... ..++..+.+..+ ..|+++|+||+|+...
T Consensus 82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence 22356788999999999984322222 245555555432 3799999999999764
No 93
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=1.3e-16 Score=108.01 Aligned_cols=120 Identities=16% Similarity=0.115 Sum_probs=73.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
..+|+++|.+|+|||||+|++++.... ....+...... ....... ....+.+|||||...... ..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~~l~D~~G~~~~~~----~~------- 68 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSY--RKQVEVDCQQCMLEILDTAGTEQFTA----MR------- 68 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEE--EEEEESSSCEEEEEEEEECSSCSSTT----HH-------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceE--EEEEEECCEEEEEEEEECCChHHHHH----HH-------
Confidence 478999999999999999999976532 22111111111 1122221 234689999999775421 11
Q ss_pred HhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..++..+|++++|+++++..+.. ...+++.+.+.... ...|+++|+||+|+....
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDER 124 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccc
Confidence 12344579999999998432222 13455555554322 237899999999997643
No 94
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.69 E-value=1.1e-15 Score=106.35 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=76.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||++++++.... . ...|.......... ++..+.+|||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~--~---~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA--T---LQPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC--C---CCCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c---cccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 45679999999999999999999976532 1 11222223344555 67899999999976432 12
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.+|++++|+|+++..+... ..+++.+.... ....|+++|+||+|+...
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCC
Confidence 2356788999999999985433222 22333333221 133799999999999763
No 95
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=2.5e-16 Score=108.03 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
.....+|+++|.+|+|||||+|+|++.... .... .|..... ..... .+ ..+.+|||||.........
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~---~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~----- 75 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYD---PTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE----- 75 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH-----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCc-cccC---CCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH-----
Confidence 456689999999999999999999986532 2211 1221111 22333 43 3788999999775432221
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..+|++++|+++++..+.. ...++..+...... ...|+++|+||+|+...
T Consensus 76 ------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 76 ------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ 129 (181)
T ss_dssp ------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG
T ss_pred ------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 2334569999999998432222 12344444333221 23689999999998764
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.68 E-value=9e-16 Score=105.92 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=79.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+....+|+++|.+|+|||||++.+++.... . ...|.......... .+..+.+|||||... +.
T Consensus 12 ~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~--~---~~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~ 74 (181)
T 1fzq_A 12 APDQEVRILLLGLDNAGKTTLLKQLASEDIS--H---ITPTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------IR 74 (181)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCE--E---EEEETTEEEEEEEE-TTEEEEEEECSSCGG-----------GH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHhcCCCC--c---ccCcCCeEEEEEEE-CCEEEEEEECCCCHH-----------HH
Confidence 3466799999999999999999999986531 1 11222222334445 678899999999653 22
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 152 (173)
.....++..+|++++|+|+++.-+... ..+++.+.+.. ....|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 333456778999999999984433222 22333333322 123799999999999865
No 97
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.68 E-value=1.6e-16 Score=118.27 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=83.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~-~~~~~~~~~~~~~~~ 95 (173)
.+...++++|++|+|||||+|+|++....... .....|.......... .+..+.++||||+. .. ...+...+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~ 80 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNK 80 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHH
Confidence 34568999999999999999999997643221 1122232222222333 67789999999986 21 1223334444
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.+..++..+|++++|+++++ ++..+...++.+.. ...|+++++||+|+..
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 44567889999999999985 87776654444332 2378999999999986
No 98
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.68 E-value=5.2e-16 Score=113.09 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=81.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|+|++..... + ..++.|.......... .+..+.+|||||+........ .+.+...
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~-~-~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~ 77 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYV-A-NWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARD 77 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEE-E-ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcc-c-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHH
Confidence 345789999999999999999999977432 2 2335566655555655 678999999999987644321 1112111
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.. ....+|++++|+|++ .+.. ...+...+.+ . ..|+++|+||+|+...
T Consensus 78 ~~-~~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~---~--~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 78 YL-LKGDADLVILVADSV-NPEQ-SLYLLLEILE---M--EKKVILAMTAIDEAKK 125 (258)
T ss_dssp HH-HHSCCSEEEEEEETT-SCHH-HHHHHHHHHT---T--TCCEEEEEECHHHHHH
T ss_pred HH-hhcCCCEEEEEeCCC-chhh-HHHHHHHHHh---c--CCCEEEEEECcCCCCc
Confidence 11 115789999999998 4332 2233333332 2 3799999999998643
No 99
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=112.15 Aligned_cols=118 Identities=19% Similarity=0.119 Sum_probs=65.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+..+|+++|.+|+|||||++.+++.... ....+...... ...... .+. .+.+|||||.... .
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~ 96 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERY--MVNLQV-KGKPVHLHIWDTAGQDDY-----------D 96 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEE--EEEEEE-TTEEEEEEEEEC------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeE--EEEEEE-CCEEEEEEEEECCCchhh-----------h
Confidence 35689999999999999999999986632 22112111111 122233 333 6899999996532 2
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....++..+|++++|+|+++..+... ..+++.+.... ...|+++|+||+|+...
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc
Confidence 233356778999999999984322222 13444444432 23799999999999865
No 100
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.68 E-value=9.5e-16 Score=104.25 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=73.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+++++|++|+|||||+|.|++....... .++.+.......+.. .+..+.+|||||+....... ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 478999999999999999999987642221 122233333333444 67789999999988653222 1111211111
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
. ...++++++++|+++ .. ....++..+.+ . ..|+++|.||+|+..
T Consensus 78 ~-~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~---~--~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-LE-RNLYLTLQLME---M--GANLLLALNKMDLAK 122 (165)
T ss_dssp H-HHCCSEEEEEEETTC-HH-HHHHHHHHHHH---T--TCCEEEEEECHHHHH
T ss_pred h-cCCCCEEEEEecCCc-hh-HhHHHHHHHHh---c--CCCEEEEEEchHhcc
Confidence 1 126799999999983 21 12233333333 2 378999999999864
No 101
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.68 E-value=6.9e-16 Score=109.25 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=75.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceee--EEEEEEeeC-----------CceEEEEeCCCCCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC--EMQRTVLKD-----------GQVVNVIDTPGLFDFS 83 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~v~DtpG~~~~~ 83 (173)
....+|+++|.+|+|||||+|+|++.... .. ...|... ......+.. ...+.+|||||.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~---- 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN-PK---FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ---- 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC-CE---EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC-cC---CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc----
Confidence 45689999999999999999999986531 11 1112211 112222211 357999999993
Q ss_pred CCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 84 AGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
.++......++..+|++++|+|+++..+. .....++.+..... ...|+++|+||+|+...
T Consensus 95 -------~~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 95 -------ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp -------HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred -------HhHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 23444555677889999999999843211 12223333332211 23789999999998764
No 102
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.68 E-value=1.6e-16 Score=109.60 Aligned_cols=118 Identities=19% Similarity=0.084 Sum_probs=76.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+..+|+++|.+|+|||||++++++.... ....+...... ...... .+ ..+.+|||||.... .
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 67 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNY--SANVMV-DGKPVNLGLWDTAGQEDY-----------D 67 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEE--EEEEEE-TTEEEEEEEECCCCSGGG-----------T
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCccccee--EEEEEE-CCEEEEEEEEECCCCHhH-----------H
Confidence 34679999999999999999999876532 22111111111 112222 33 35679999997642 1
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....++..+|++++|+|+++..+.... .+++.+.+..+ ..|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc
Confidence 2233567889999999999843332221 35555555432 3799999999998764
No 103
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.68 E-value=5e-16 Score=108.24 Aligned_cols=118 Identities=10% Similarity=0.039 Sum_probs=75.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..+..+|+++|.+|+|||||++.+++.... .. ..|.......... .+..+.+|||||......
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~----------- 88 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP----------- 88 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EE----EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-cc----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------
Confidence 456789999999999999999999876532 11 1233333344455 678999999999764321
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+|+++..+.. ...+++.+..... ...|+++|+||+|+...
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQ--ESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 1223456789999999998443222 2223344433321 23799999999998765
No 104
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.4e-16 Score=111.13 Aligned_cols=120 Identities=22% Similarity=0.137 Sum_probs=74.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||+|+|++...........+.+ ... .... .+ ..+.+|||||.... .
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~--~~~~-~~~~~~~~l~Dt~G~~~~----~------- 70 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQ--VISC-DKSVCTLQITDTTGSHQF----P------- 70 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE-EEE--EEEE-TTEEEEEEEEECCGGGSC----H-------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc-eeE--EEEE-CCEEEEEEEEeCCChHHh----H-------
Confidence 345899999999999999999999765322111111111 111 1222 32 37899999996642 1
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.....++..+|++++|+++++..+... ..+++.+.+........|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 112234456799999999984322221 345555555543223379999999999875
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.68 E-value=7.3e-16 Score=107.93 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=73.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
..+..+|+++|++|+|||||++++++.... . .. .|.......... ++..+.+|||||......
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~-~~---~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~----------- 84 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-Q-HV---PTLHPTSEELTI-AGMTFTTFDLGGHIQARR----------- 84 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-c-cC---CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-----------
Confidence 345678999999999999999999986632 1 11 121112234445 678999999999764322
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc--cccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK--KVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iv~tk~D~~~ 151 (173)
....+++.+|++++|+|+++.-+.. ....++.+.... ....|+++|+||+|+..
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLL--ESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2335677899999999998443222 222333333322 12379999999999975
No 106
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.3e-16 Score=110.10 Aligned_cols=127 Identities=16% Similarity=0.087 Sum_probs=74.5
Q ss_pred CcccCCC-CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCC
Q 043441 9 DWELTSP-SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAG 85 (173)
Q Consensus 9 ~~~~~~~-~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~ 85 (173)
++...+. ..+..+|+++|.+|+|||||++++++.... ....+...+.. ...... .+ ..+.+|||||...
T Consensus 17 ~~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~l~Dt~G~~~---- 88 (196)
T 2atv_A 17 NLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTY--RHQATI-DDEVVSMEILDTAGQED---- 88 (196)
T ss_dssp ----------CCEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEE--EEEEEE-TTEEEEEEEEECCCCCC----
T ss_pred ccchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceE--EEEEEE-CCEEEEEEEEECCCCCc----
Confidence 3333443 356789999999999999999999986532 22112111111 112222 33 4689999999875
Q ss_pred cHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 86 SEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.. .. ..++..++++++|+|+++.-+.. ...+++.+.+.... ...|+++|+||+|+...
T Consensus 89 ~~-~~-------~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 89 TI-QR-------EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHS 147 (196)
T ss_dssp CH-HH-------HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG
T ss_pred cc-ch-------hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccc
Confidence 11 11 12344569999999998432222 13445555554321 23789999999999764
No 107
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.67 E-value=3e-16 Score=108.41 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=72.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
+..+|+++|.+|+|||||+|+|++.... ....+ .+.......... .+. .+.+|||||........
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------- 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV-DEYDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMR--------- 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC-CCCCT--TCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTH---------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCC--CchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHH---------
Confidence 4579999999999999999999976632 22111 112222222333 444 47789999976543221
Q ss_pred HHHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|+++++..+.. ...++..+...... ...|+++|+||+|+...
T Consensus 70 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 70 --DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSC
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCccc
Confidence 12344579999999998432222 23444444443222 23799999999998753
No 108
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.67 E-value=5.1e-16 Score=107.62 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=71.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
..+..+|+++|.+|+|||||+|.|++.... ..... .+.......... .+ ..+.+|||||... +
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 82 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------Y 82 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCT--TCCEEEEEEEEE-TTEEEEEEEEECCC---------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCc-cccCC--ccceEEEEEEEE-CCEEEEEEEEECCChHH-----------H
Confidence 345689999999999999999999976532 22111 111111122333 33 3588999999653 2
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
......++..++++++|+++.+..+..+ ..+++.+...... ...|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 2233456788999999999984432222 3444445444321 2379999999999875
No 109
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.7e-16 Score=110.77 Aligned_cols=119 Identities=20% Similarity=0.118 Sum_probs=75.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.....+|+++|.+|+|||||+|.|++.... ....+...... ...... .+ ..+.+|||||......
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 88 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENY--VADIEV-DGKQVELALWDTAGQEDYDR--------- 88 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEE--EEEEEE-TTEEEEEEEEECTTCTTCTT---------
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceE--EEEEEE-CCEEEEEEEEECCCcHHHHH---------
Confidence 345679999999999999999999986632 11111111111 112233 33 4789999999765421
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+++++..+... ..+++.+.+..+ ..|+++|+||+|+...
T Consensus 89 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 89 --LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD 144 (207)
T ss_dssp --TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC
T ss_pred --HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc
Confidence 22356788999999999984322221 345555555322 3789999999999765
No 110
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=7.3e-16 Score=115.10 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=81.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC---Cc---cceee--------------------------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS---SG---VTSTC-------------------------------- 58 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~---~~---~t~~~-------------------------------- 58 (173)
...++|+++|.+|+|||||+|+|+|...+..+... .+ .+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999998753322110 00 00000
Q ss_pred -------------------EEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhccCCceEEEEEeec-CCC
Q 043441 59 -------------------EMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGMEIVKCIGLAKDGIHAVLVGFSV-RSR 116 (173)
Q Consensus 59 -------------------~~~~~~~~~~~~~~v~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~-~~~ 116 (173)
....+..+.+..+.+|||||+..... ..+.....+...+..++..+|++++|+++ +..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00001221346799999999975221 11223344555666677788999999987 334
Q ss_pred CCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhc
Q 043441 117 FPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLG 162 (173)
Q Consensus 117 ~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 162 (173)
+...+ ...++.+.. ...|+++|+||+|+..... ...++++
T Consensus 182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~-~~~~~~~ 222 (315)
T 1jwy_B 182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGT-DAMEVLT 222 (315)
T ss_dssp STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSC-CCHHHHT
T ss_pred hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcch-HHHHHHh
Confidence 44333 233333322 2378999999999987642 2344444
No 111
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.67 E-value=3.4e-16 Score=110.31 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=75.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
....+|+++|.+|+|||||++.+++.... ....+...... ....... ....+.+|||||..... .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 91 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENY--TASFEIDTQRIELSLWDTSGSPYYD-----------N 91 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEE--EEEEESSSSEEEEEEEEECCSGGGT-----------T
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeE--EEEEEECCEEEEEEEEeCCCcHhhh-----------H
Confidence 45689999999999999999999986532 22111111111 1122221 23478999999965421 1
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
....++..++++++|+|+++..+... ..+++.+.+... ..|+++|+||+|+..
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 146 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence 22356788999999999984332222 244455554422 379999999999874
No 112
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.66 E-value=5.7e-16 Score=107.67 Aligned_cols=127 Identities=9% Similarity=0.046 Sum_probs=78.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC------CCccceeeEEEEE---Ee-eCCceEEEEeCCCCCCCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRT---VL-KDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~---~~-~~~~~~~v~DtpG~~~~~~ 84 (173)
......+|+++|.+|+|||||++.+.+......... ....|........ .. .....+.+|||||.....
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~- 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN- 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS-
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH-
Confidence 345668999999999999999998887543211110 0112222222111 11 022368999999976531
Q ss_pred CcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc----cccceEEEEEeCCCCCCC
Q 043441 85 GSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK----KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~iv~tk~D~~~~ 152 (173)
.....+++.+|++++|+|+++.........++.+.+++.. ....|+++|+||+|+...
T Consensus 89 ----------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 89 ----------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp ----------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred ----------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 1223467889999999999844444444444444443321 134799999999998765
No 113
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.2e-16 Score=109.70 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.+..+|+++|.+|+|||||+++|++...........+.+. ........ ....+.+|||||.......
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 80 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF--KVKTISVDGNKAKLAIWDTAGQERFRTL---------- 80 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECSSGGGCCS----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE--EEEEEEECCeEEEEEEEeCCCchhhhhh----------
Confidence 3458999999999999999999998663222111112222 22222331 2357899999996643221
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
...+++.+|++++|+|+++..+... ..+++.+..... ....|+++|+||+|+..
T Consensus 81 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 81 -TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSS
T ss_pred -hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcc
Confidence 2245678899999999984322211 233333332211 12378999999999854
No 114
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.66 E-value=2.6e-16 Score=110.66 Aligned_cols=119 Identities=20% Similarity=0.101 Sum_probs=75.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
..+..+|+++|.+|+|||||++.+++.... ....+ .+.......... .+. .+.+|||||....
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------- 91 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIP--TVFDNYSANVMV-DGKPVNLGLWDTAGLEDY----------- 91 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCC--CSEEEEEEEEEC-C-CEEEEEEEEECCSGGG-----------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCC--eecceeEEEEEE-CCEEEEEEEEECCCchhh-----------
Confidence 356789999999999999999999975532 22111 111222222233 343 4569999997532
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
......++..+|++++|+|+++..+.... .+++.+.... ...|+++|+||+|+...
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence 22334578899999999999844333322 3455555442 23799999999998865
No 115
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.66 E-value=4.8e-16 Score=105.64 Aligned_cols=121 Identities=20% Similarity=0.092 Sum_probs=67.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+|+++|.+|+|||||++++++........ ...+.......... .+ ..+.+|||||...... .+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~-- 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WLQ-- 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hhh--
Confidence 3689999999999999999998755321111 11222222233333 33 4678999999875311 011
Q ss_pred HHhccCCceEEEEEeecCCCCCHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..++..+|++++|+++++.-+.. ...++..+...... ...|+++|+||+|+....
T Consensus 70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 70 -DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSR 125 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGC
T ss_pred -hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcc
Confidence 12344579999999998432211 12344444433221 137999999999987543
No 116
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.5e-16 Score=107.05 Aligned_cols=122 Identities=10% Similarity=0.094 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|.|++....... .....+.. ... ....+.+|||||......... ..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~~~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~~-------~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA-----ADY-DGSGVTLVDFPGHVKLRYKLS-------DY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc-ccCCCcee-----eee-cCCeEEEEECCCCchHHHHHH-------HH
Confidence 56689999999999999999999986532211 01111111 111 456788999999876543222 11
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc-----cccceEEEEEeCCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK-----KVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~iv~tk~D~~~~~ 153 (173)
+......+|++++|+|++ .-........+++.+.+.. ....|+++|+||+|+....
T Consensus 112 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHhhcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 222334579999999997 2122222333334333321 1237999999999998763
No 117
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=106.22 Aligned_cols=120 Identities=21% Similarity=0.109 Sum_probs=72.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE-EEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGME 92 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~ 92 (173)
.....+|+++|.+|+|||||++.+++... .....+ |..... ..... .+ ..+.+|||||...... +
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~----~--- 85 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRF-ISEYDP---NLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN----C--- 85 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCC---CCC----T---
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCC-CcccCC---CccceeeEEEEE-CCEEEEEEEEECCCCCcchh----H---
Confidence 45668999999999999999999997663 222221 211111 12222 33 4688999999765422 1
Q ss_pred HHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcc-cccceEEEEEeCCCCCCC
Q 043441 93 IVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGK-KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~iv~tk~D~~~~ 152 (173)
..++..++++++|+++++.-+... ..+++.+...... ....|+++|+||+|+...
T Consensus 86 -----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 86 -----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp -----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred -----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 124567899999999984322222 3444445443211 023789999999998754
No 118
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.66 E-value=1.3e-16 Score=124.78 Aligned_cols=123 Identities=22% Similarity=0.208 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
.+.+|+++|++|+|||||+|+|++....... ...+.|.......... ++..+.+|||||+.+.....+.. .....
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve~~---gi~~~ 297 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVEKI---GVERS 297 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHHHH---HHHHH
Confidence 4567999999999999999999986532111 1223343333334455 78899999999997642222211 11223
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+..+|++++|+|+++..+..+..+++.+. . .|+++|+||+|+...
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~---~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVK----H---RPLILVMNKIDLVEK 345 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----T---SCEEEEEECTTSSCG
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----C---CcEEEEEECCCCCcc
Confidence 35678899999999999777777655544432 2 689999999999865
No 119
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.66 E-value=1.5e-16 Score=113.10 Aligned_cols=124 Identities=18% Similarity=0.066 Sum_probs=77.4
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
.......+|+++|.+|+|||||+|.++............+.+.......... ....+.+|||||........
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~------- 81 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLR------- 81 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCC-------
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHH-------
Confidence 3445678999999999999999999654331111122222333333333222 33578999999965432221
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+++.+|++++|+++++..+... ..++..+.+... ..|+++|+||+|+...
T Consensus 82 ----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 82 ----DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR 134 (221)
T ss_dssp ----HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC
T ss_pred ----HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc
Confidence 235668899999999984322221 345555555422 3799999999998754
No 120
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.65 E-value=2e-16 Score=119.47 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
.|+|+|.+|||||||+|+|++...... .....|.......+.......+.++||||+.+.......+..++.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH---
Confidence 589999999999999999998653222 222233333344455523478999999998653333333444444333
Q ss_pred cCCceEEEEEeecCC---CCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRS---RFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+++++++|+|+++ +-...+ ..+++.+..........|+++|+||+|+...
T Consensus 235 -~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 235 -ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp -HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred -HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 34699999999984 222222 3444444443211134799999999999864
No 121
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.65 E-value=6e-16 Score=106.12 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.+..+|+++|.+|+|||||++.+++..... ..+....... ..... .+ ..+.+|||||...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~------------- 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYK--KEMLV-DGQTHLVLIREEAGAPD------------- 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEE--EEEEE-TTEEEEEEEEECSSSCC-------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEE--EEEEE-CCEEEEEEEEECCCCch-------------
Confidence 456899999999999999999999866422 2221122211 22223 33 3688999999764
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHccc-ccceEEEEEeCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKK-VFDYMIVVFTGGDEL 150 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~iv~tk~D~~ 150 (173)
..+++.+|++++|+|+++..+... ..+++++.+..... ...|+++|.||+|+.
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 123445799999999984433222 34444555543311 236999999999984
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.65 E-value=2.3e-15 Score=104.12 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=77.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
++.+..+|+++|++|+|||||+|.|++...+... .++.+.......... .+..+.+|||||......... ...+.
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~ 77 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIA 77 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHH
Confidence 3446689999999999999999999987643222 223344444445555 678999999999886532211 11111
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
..... ...++++++++|.+ .+ .....+ +.+.... ..|+++|+||+|+..
T Consensus 78 ~~~~~-~~~~~~~i~v~d~~-~~-~~~~~~---~~~~~~~--~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 78 RDYII-NEKPDLVVNIVDAT-AL-ERNLYL---TLQLMEM--GANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHH-HHCCSEEEEEEEGG-GH-HHHHHH---HHHHHTT--TCCEEEEEECHHHHH
T ss_pred HHHHh-ccCCCEEEEEecch-hH-HHHHHH---HHHHHhc--CCCEEEEEEhhhccc
Confidence 11111 12478999999997 32 112233 3333222 378999999999864
No 123
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.65 E-value=3.2e-17 Score=114.80 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=72.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||+|+|++........ ...+.......... .+ ..+.+|||||........
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------- 99 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTIT-------- 99 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCS--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHH--------
Confidence 456899999999999999999999865322111 12222233333444 44 478999999976543221
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++++|+|+++..+... ..+++.+..... ...|+++|+||+|+...
T Consensus 100 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 100 ---SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp ---CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--
T ss_pred ---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc
Confidence 246778999999999985332221 233333333221 23799999999998754
No 124
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.65 E-value=4.3e-16 Score=120.53 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
.....+|+++|.+|+|||||+|+|++....... ...+.|.......... .+. .+.+|||||+.+............
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~l~liDTpG~~d~~~l~~~~~~~~- 107 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEKA- 107 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEE-TTTEEEEEEECSSTTCCCTTCCCCHHHH-
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEE-CCCCeEEEEECcCCCcccchhHHHHHHH-
Confidence 345689999999999999999999987642222 2334455555555665 444 899999999987643322212222
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..++..+|++++|+|+ ........+++.+.+. ..|+++|+||+|+....
T Consensus 108 ---~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 108 ---RRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp ---HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred ---HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence 2456678999999998 4556666777777665 27899999999998775
No 125
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.65 E-value=8.9e-15 Score=111.23 Aligned_cols=128 Identities=19% Similarity=0.100 Sum_probs=85.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+++++|.+|+|||||+|.|++....... ....|.......... .+..+.++||||+.+......... + ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~-~-~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEI-E-KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHH-H-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHH-H-HHH
Confidence 56789999999999999999999987632121 223444444444544 677899999999976432211111 1 112
Q ss_pred HHhccCCceEEEEEeecCCCC--CHH-HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRF--PQE-EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+......+|++++|+|+++.. +.. ...+++.+...++ ..|+++|+||+|+...
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh
Confidence 223445689999999987443 333 3566666666543 3789999999998864
No 126
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.65 E-value=2.6e-16 Score=108.23 Aligned_cols=118 Identities=19% Similarity=0.122 Sum_probs=70.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEE-EEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||++++++... ..... .|..... ..... .....+.+|||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~---~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYV---PTVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------- 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------CBCCCC-------CEEECCCC-CTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC---CeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence 4568999999999999999999987652 22211 1111110 01111 023456799999976532
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....++..+|++++|+|+++..+... ..+++.+....+ ..|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC
Confidence 222356778999999999984333222 135555555432 3799999999998765
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=6.9e-16 Score=108.87 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=76.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||++.+++... .....+...... ...... .+ ..+.+|||||......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF--SANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCE--EEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeE--EEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 4568999999999999999999997653 222211111111 112222 33 4789999999875432
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
....++..+|++++|+|+++..+... ..+++.+....+ ..|+++|+||+|+...
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC
Confidence 12246788999999999984322222 245555554422 3799999999998764
No 128
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.65 E-value=5e-16 Score=104.82 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=71.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
..+|+++|.+|+|||||+|.+++.... ....+..... ....... .+ ..+.+|||||..... ...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~------ 68 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDS--YRKQVVI-DGETCLLDILDTAGQEEYS----AMR------ 68 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEE--EEEEEEE-TTEEEEEEEEECCCCSSCC----HHH------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceE--EEEEEEE-CCEEEEEEEEECCCchhhh----HHH------
Confidence 468999999999999999999976532 2211111111 1122222 33 357899999976532 111
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
..++..+|++++|+++++..+... ..+++.+.+.... ...|+++|+||+|+..
T Consensus 69 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 69 -DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred -HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 123445799999999974322221 3444445444321 1379999999999876
No 129
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.64 E-value=6.6e-15 Score=109.07 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=78.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC---Ccc----------------------cee--------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS---SGV----------------------TST-------------- 57 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~---~~~----------------------t~~-------------- 57 (173)
...++|+++|.+|+|||||+|+|++.......... .+. ++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999997753221100 010 000
Q ss_pred ----------eEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhccCCceEEE-EEeecCCCCCHHHH-H
Q 043441 58 ----------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGMEIVKCIGLAKDGIHAVL-VGFSVRSRFPQEEE-A 123 (173)
Q Consensus 58 ----------~~~~~~~~~~~~~~~v~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii-~v~~~~~~~~~~~~-~ 123 (173)
........+....+.+|||||+..... ..+.....+...+..++..++.++ +|+++++.+...+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000111121246899999999986321 012222234444445555666555 78899766555543 2
Q ss_pred HHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 124 ALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+++.+. . ...|+++|+||+|+....
T Consensus 184 ~~~~~~---~--~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 184 IAKEVD---P--QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHC---T--TCSSEEEEEECGGGSCTT
T ss_pred HHHHhC---C--CCCeEEEEEEccccCCCC
Confidence 333322 1 237899999999998653
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.63 E-value=5.7e-15 Score=108.28 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=79.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+|+++|++|+|||||+|+|+|... ..+ ..++.|.........+ .+..+.+|||||+.+....... ..+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~- 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVG-NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARNF- 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEE-ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence 57899999999999999999999864 222 2344555555556666 7788999999999875442221 1111111
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.....+|++++|+|++ .. .....+...+.+. ...|+++|+||+|+..
T Consensus 77 ~~~~~~d~vi~v~D~~-~~-~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 77 ILDGNADVIVDIVDST-CL-MRNLFLTLELFEM----EVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHTTCCSEEEEEEEGG-GH-HHHHHHHHHHHHT----TCCSEEEEEECHHHHH
T ss_pred hhccCCcEEEEEecCC-cc-hhhHHHHHHHHhc----CCCCEEEEEEChhcCc
Confidence 1236789999999998 32 1222332223322 1178999999999653
No 131
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.63 E-value=9.9e-16 Score=106.07 Aligned_cols=116 Identities=18% Similarity=0.084 Sum_probs=72.9
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHH
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG 90 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~v~DtpG~~~~~~~~~~~~ 90 (173)
.....+..+|+++|.+|+|||||++.+++.... ....+. .......... .+ ..+.+|||||.....
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~t---~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~------- 81 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYV-QEESPE---GGRFKKEIVV-DGQSYLLLIRDEGGPPELQ------- 81 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCTT---CEEEEEEEEE-TTEEEEEEEEECSSSCCHH-------
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCC---cceEEEEEEE-CCEEEEEEEEECCCChhhh-------
Confidence 334567789999999999999999999876632 222222 1111123333 44 357789999976521
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
+++.+|++++|+|+++..+... ..+++.+..... ....|+++|.||+|+.
T Consensus 82 ---------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 ---------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp ---------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred ---------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 3345799999999984332222 334444433211 1347999999999985
No 132
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.63 E-value=5.8e-15 Score=112.37 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=76.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
..++++++|++|+|||||+|.|++....... ....|.......+.+ .+..+.++||||+... ....+...+...+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~--lp~~lve~f~~tl 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG--IPPQIVDAFFVTL 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS--CCGGGHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEEEEE-CCEEEEEEeCCCchhc--CCHHHHHHHHHHH
Confidence 3445999999999999999999997642221 223444444445555 6788999999998642 1122333343333
Q ss_pred HhccCCceEEEEEeecCCCC--CHHHH-HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRF--PQEEE-AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+..+|.+++|+|+++.. ..... .+.+.+.+. +. ...|+++|.||+|++..
T Consensus 253 -~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 253 -SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING 307 (364)
T ss_dssp -HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS
T ss_pred -HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc
Confidence 3466889999999997442 11111 223333332 21 12689999999999865
No 133
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=6.1e-16 Score=123.47 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEE----------------------------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR---------------------------------- 62 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------------- 62 (173)
...++|+|+|.+|+|||||+|+|++...........+.|.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 4678999999999999999999999875311111122221111000
Q ss_pred ---EEeeCC---ceEEEEeCCCCCCCCCCcHHHHH--HHHHHHHhccCCceEEEEEeecCC-CCCHHHHHHHHHHHHHHc
Q 043441 63 ---TVLKDG---QVVNVIDTPGLFDFSAGSEFVGM--EIVKCIGLAKDGIHAVLVGFSVRS-RFPQEEEAALHSWQTLFG 133 (173)
Q Consensus 63 ---~~~~~~---~~~~v~DtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~ 133 (173)
... .. ..+.+|||||+.+.... .... .+...+..++..+|++++|+|+++ ........+++.+...
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 000 00 36899999999863211 0110 033344445667899999999984 3555555665544331
Q ss_pred ccccceEEEEEeCCCCCCC
Q 043441 134 KKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 134 ~~~~~~~~iv~tk~D~~~~ 152 (173)
..++++|+||+|+...
T Consensus 218 ---~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVET 233 (550)
T ss_dssp ---GGGEEEEEECGGGSCH
T ss_pred ---CCCEEEEEECCCccCH
Confidence 2689999999999865
No 134
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=4.4e-15 Score=105.16 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=74.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
.....+|+++|++|+|||||+++|++....... .....+... .. ....+.+|||||+.... .....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~-~~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCee-eecCceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHH
Confidence 456789999999999999999999986632111 111111111 11 45678999999986431 12222
Q ss_pred HHHhccCCceEEEEEeecC-CCCCHH-HHHHHHHHHHHHc--ccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVR-SRFPQE-EEAALHSWQTLFG--KKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~-~~~~~~-~~~~~~~l~~~~~--~~~~~~~~iv~tk~D~~~~~ 153 (173)
.+......+|++++|+|++ +.-+.. ...++..+..... .....|+++|+||+|+....
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 2222223479999999998 322222 2233333333211 11237899999999998764
No 135
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.2e-15 Score=113.81 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=83.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
+...+|+|||.+++|||||+|+|++..... ...+..|.........+ .+..++++||||+............++...
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 345689999999999999999999976422 33445666666666666 889999999999997655555555555544
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc-ccceEEEEEeCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK-VFDYMIVVFTGGDEL 150 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iv~tk~D~~ 150 (173)
+. .+|++++|+|+++.. .+...++.-.+.+... ...|..+++||.|+.
T Consensus 147 i~----~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 AR----TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HH----HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HH----hcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 44 569999999998432 2223332222332322 336888999999974
No 136
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.62 E-value=7.9e-15 Score=107.57 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=75.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIG 98 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (173)
..+|+++|.+|+|||||+|+|++...+... .++.|.......+.. +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 478999999999999999999997643222 234444433333322 56899999999987543221 112221111
Q ss_pred hccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 99 LAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
. ...+|++++|+|++ ... ....+...+.+ ...|+++|+||+|+..
T Consensus 77 ~-~~~~d~vi~V~D~t-~~e-~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 77 L-SQRADSILNVVDAT-NLE-RNLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp H-TTCCSEEEEEEEGG-GHH-HHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred h-cCCCCEEEEEecCC-chH-hHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 1 14689999999998 321 12233333333 2378999999999864
No 137
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=8.1e-15 Score=103.74 Aligned_cols=123 Identities=19% Similarity=0.102 Sum_probs=73.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
....+|+|+|.+|+|||||+|.+++... +.....+.+.+.... .+.. .+. .+.++||+|... + .
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~--~i~~-~~~~~~l~~~Dt~g~~~------~----~ 101 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER--TLMV-DGESATIILLDMWENKG------E----N 101 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEE--EEEE-TTEEEEEEEECCTTTTH------H----H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEE--EEEE-CCeeeEEEEeecCCCcc------h----h
Confidence 3457899999999999999999997432 222222222222222 2333 443 567899998542 1 1
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
......+++.++++++|++.+++-+.+. ..+...+.+... ....|+++|.||+|+....
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r 161 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCR 161 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGC
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCc
Confidence 1223456788999999999984322222 233333333211 1237999999999987543
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.62 E-value=5.9e-15 Score=111.05 Aligned_cols=116 Identities=11% Similarity=0.029 Sum_probs=75.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
...+|+|+|.+|+|||||++.|++.... .. ..|.......... .+..+.+|||||..... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EE----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cc----ccccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHH
Confidence 3458999999999999999999886632 21 1244444555555 77899999999955432 222
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
..++..+|++|+|+|+++.-+... ..+++.+..... ...|+++|+||+|+...
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 345678899999999985444332 222333332221 23789999999999865
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=1.8e-15 Score=117.95 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=77.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH-H
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIV-K 95 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~-~ 95 (173)
....+++++|++|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+........+....+. .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999997642222 2223343333344555 7788999999998542211100000000 0
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.....+..+|++++++|+.+..+..+....+.+.+ ...++++|+||+|+.+.+
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTTG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCCch
Confidence 00123445699999999987777666544444433 227899999999998754
No 140
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.61 E-value=1.2e-14 Score=110.45 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=78.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC--Cccc-----------------------e----------------
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS--SGVT-----------------------S---------------- 56 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~--~~~t-----------------------~---------------- 56 (173)
..++|+++|.+|+|||||+|+|+|......+... ..++ +
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999997753222111 0000 0
Q ss_pred --------eeEEEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhccCCc-eEEEEEeecCCCCCHHHHHHH
Q 043441 57 --------TCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGMEIVKCIGLAKDGI-HAVLVGFSVRSRFPQEEEAAL 125 (173)
Q Consensus 57 --------~~~~~~~~~~~~~~~~v~DtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~ii~v~~~~~~~~~~~~~~~ 125 (173)
......+..+....+.+|||||+...... .+.....+...+..++..+ ++++++++++..+...+. .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--H
Confidence 00001112212467999999999863221 1222233344444444344 566667777644444432 2
Q ss_pred HHHHHHHcccccceEEEEEeCCCCCCCCcccHHHHhc
Q 043441 126 HSWQTLFGKKVFDYMIVVFTGGDELEDNEETLEDYLG 162 (173)
Q Consensus 126 ~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 162 (173)
+.+...... ..++++|+||+|++... ....++++
T Consensus 188 ~i~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~ 221 (353)
T 2x2e_A 188 KVAKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLE 221 (353)
T ss_dssp HHHHHHCTT--CTTEEEEEECGGGSCTT-CCCHHHHT
T ss_pred HHHHHhCcC--CCceEEEeccccccCcc-hhHHHHHh
Confidence 333433222 37899999999998653 12344444
No 141
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=6e-15 Score=101.97 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
.+|+++|.+|+|||||+|++++... ..... ++.+..... ... . .+.+|||||+.....-.......+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~-~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKR-PGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSS-TTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCC-CCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5799999999999999999998763 22222 233333222 222 2 788999999765433222223333333333
Q ss_pred c----cCCceEEEEEeecCCCCCHHHHHHHHH--------HHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 A----KDGIHAVLVGFSVRSRFPQEEEAALHS--------WQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~----~~~~~~ii~v~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+ ...+++++++++.. .+......+.+. +...... ...|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSC
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCc
Confidence 2 33456777777765 222111122211 1111111 23789999999999875
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.61 E-value=1.3e-15 Score=119.65 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=81.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHH-HHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVG-MEIVKC 96 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~-~~~~~~~~~~-~~~~~~ 96 (173)
+.+|+++|.+|+|||||+|+|++....... ...+.|.......+.. .+..+.+|||||+. +.....+... ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~-- 318 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTL-- 318 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHH--
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHH--
Confidence 378999999999999999999986532111 2233444444445555 78899999999998 5533222111 1112
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.++..+|++++|+|+++..+.++...++. +. ..|+++|+||+|+...
T Consensus 319 --~~~~~aD~vl~VvD~s~~~s~~~~~il~~----l~---~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 319 --QEIEKADIVLFVLDASSPLDEEDRKILER----IK---NKRYLVVINKVDVVEK 365 (482)
T ss_dssp --HHHHHCSEEEEEEETTSCCCHHHHHHHHH----HT---TSSEEEEEEECSSCCC
T ss_pred --HHhhcccEEEEEecCCCCCCHHHHHHHHH----hc---CCCEEEEEECcccccc
Confidence 23446799999999986767665544433 22 2789999999999754
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.60 E-value=4.4e-15 Score=102.64 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=67.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC-CccccCCCCccceeeEEEEEEe------eCCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL------KDGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
..+|+++|++|+|||||++.+++.. .+.... ..|.......... .....+.+|||||...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~---~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------- 68 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ---SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE---------- 68 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHHH----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCc---ceeccEEeEEeeeccccCCCCceEEEEEecCCCHH----------
Confidence 3689999999999999999999853 222211 1122122111111 1345789999999532
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHH--HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQE--EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+......++++++++++|++.++..+.. ...++..+.... ...|+++|.||+|+...
T Consensus 69 -~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 69 -FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDE 127 (184)
T ss_dssp -HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCH
T ss_pred -HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccc
Confidence 2222233455678999999997432211 234444444332 13789999999998754
No 144
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.60 E-value=6.5e-15 Score=116.45 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=81.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....+|+++|.+|+|||||+|.|++... .. ...|.......+.. .+..+.+|||||.... ...
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~ 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS-VT----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPL 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC-CC----CCCCSSEEEEEEES-SSCEEEEEEECCCGGG-----------SGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccceeEEEEEe-CCEEEEEEECCCcHHH-----------HHH
Confidence 4568999999999999999999998763 22 12355555555666 7789999999996542 222
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc--ccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK--VFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++|+|+|+++.-+.. ....++.+..... ...|+++|+||+|+...
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHH--HHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHhccCCEEEEEEECcchhHHH--HHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 346788999999999998543222 2223333333221 23799999999998765
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=9.8e-15 Score=115.08 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCc-cc----------------------------cCCCCccceeeEEEEEEeeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAF-KS----------------------------RASSSGVTSTCEMQRTVLKD 67 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~-~~----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (173)
.+..+|+++|.+++|||||+++|++.... .. .....+.|.......... .
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence 35579999999999999999999754110 00 001124555555555666 7
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-------CCHHHHHHHHHHHHHHcccccceE
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-------FPQEEEAALHSWQTLFGKKVFDYM 140 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (173)
+..+.+|||||+.+ +...+...+..+|++++|+|+++. +.......+..+... + ..++
T Consensus 110 ~~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~---~~~i 174 (483)
T 3p26_A 110 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHNL 174 (483)
T ss_dssp SCEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T---CCCE
T ss_pred CceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C---CCcE
Confidence 78999999999853 233334566788999999999854 223333333333222 2 2569
Q ss_pred EEEEeCCCCCCCC
Q 043441 141 IVVFTGGDELEDN 153 (173)
Q Consensus 141 ~iv~tk~D~~~~~ 153 (173)
++|+||+|+...+
T Consensus 175 IvviNK~Dl~~~~ 187 (483)
T 3p26_A 175 IIAMNKMDNVDWS 187 (483)
T ss_dssp EEEEECGGGGTTC
T ss_pred EEEEECcCcccch
Confidence 9999999998743
No 146
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.36 E-value=1.5e-16 Score=111.75 Aligned_cols=120 Identities=18% Similarity=0.019 Sum_probs=75.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
.+..+|+++|.+|+|||||++.+++.... ....+.............. ....+.+|||||.... ...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDG-KPVNLGLWDTAGQEDY-----------DRL 94 (204)
Confidence 46789999999999999999999876532 2211111111111111111 2345679999996542 233
Q ss_pred HHhccCCceEEEEEeecCCCCCHHH--HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEE--EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..+|++++|+|+++..+... ..+++.+....+ ..|+++|+||+|+...
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 149 (204)
Confidence 3346678899999999975433333 245555554432 3789999999999754
No 147
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=108.66 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=67.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCC-----CccceeeEEEEEEee-CC--ceEEEEeCCCCCCCCC-----
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSA----- 84 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~v~DtpG~~~~~~----- 84 (173)
...+|+++|++|+|||||+|+|++...+..+..+ ...|........... .+ ..+.+|||||+.+...
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3467999999999999999999887665443211 112322222222211 22 2689999999965422
Q ss_pred --CcHHHHHHHHHHHHhc---------cCCceEEEEEeec-CCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 85 --GSEFVGMEIVKCIGLA---------KDGIHAVLVGFSV-RSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 85 --~~~~~~~~~~~~~~~~---------~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
-...+..++..++... -.++|+++|+++. ...+...+..+++.+ .. ..|+++|+||+|++..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCCH
Confidence 2222222322333221 1235678888875 446666665554443 22 2789999999999865
No 148
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=6.8e-14 Score=98.37 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=72.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC-CCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVG 90 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~---~~~~ 90 (173)
...++.+++++|++|||||||+|.|++.... .... ..+.+..... ... .+ .+.++||||+....... +.+.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSL-ARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHHHH
Confidence 3456789999999999999999999987621 1111 1222222221 222 22 67899999986532111 1122
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..+...+ .....++.+++++++....+..+....+++.. ...+.+++.||+|++..
T Consensus 97 ~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 97 RALGEYL-EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCH
T ss_pred HHHHHHH-HhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCCc
Confidence 1122222 22357799999999986666544444444432 22678999999999864
No 149
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.56 E-value=2.3e-14 Score=100.18 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=72.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
...+++++|++|||||||++.|++....... .+ ..........+.. .+. .+.+|||||.......
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~-t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~---------- 70 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KS-TIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRI---------- 70 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----C-CCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CC-ccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhh----------
Confidence 4578999999999999999999986532111 11 1112222233334 443 5678999996543211
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...++..++++++|++..+..+... ..++..+..... ...++++++||+|+...
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 71 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred -hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence 1234557799999999874333222 234444433211 23789999999998754
No 150
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.56 E-value=5.6e-14 Score=115.07 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=82.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC--------------------------------------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS-------------------------------------------- 52 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-------------------------------------------- 52 (173)
-..++|+++|.+++||||++|+|+|...+..+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 356899999999999999999999987543332110
Q ss_pred -----ccceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhc-cCCceEEEEEeecCCCCCHHHH-H
Q 043441 53 -----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGMEIVKCIGLA-KDGIHAVLVGFSVRSRFPQEEE-A 123 (173)
Q Consensus 53 -----~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ii~v~~~~~~~~~~~~-~ 123 (173)
+.+.......+..+....++++||||+..... ..+.....+...+..+ ...+|++++|+|++..+...+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00111112222333445789999999997431 1121122222222222 2678999999999866666664 4
Q ss_pred HHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 124 ALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+++.+... ..|+++|+||+|++...
T Consensus 209 ll~~L~~~-----g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 209 IAKEVDPQ-----GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred HHHHHHhc-----CCCEEEEEeCcccCCcc
Confidence 44443321 27899999999999654
No 151
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=6e-14 Score=109.23 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=78.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCC--ccc------------cC-----------------CCCccceeeEEEEEEe
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRA--FKS------------RA-----------------SSSGVTSTCEMQRTVL 65 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~--~~~------------~~-----------------~~~~~t~~~~~~~~~~ 65 (173)
....+++++|..++|||||+++|++... +.. +. ...+.|..........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4558999999999999999999975431 000 00 0012344434444444
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEe
Q 043441 66 KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145 (173)
Q Consensus 66 ~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~t 145 (173)
.+..+.+|||||+.+. ...+ ...+..+|++++|+|+++.........+..+... + ..++++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~----~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~---~~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNM----ATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHH----HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEE
Confidence 6678999999996542 1222 2356788999999999877666555555444332 2 146999999
Q ss_pred CCCCCCC
Q 043441 146 GGDELED 152 (173)
Q Consensus 146 k~D~~~~ 152 (173)
|+|+...
T Consensus 166 K~Dl~~~ 172 (434)
T 1zun_B 166 KMDLNGF 172 (434)
T ss_dssp CTTTTTS
T ss_pred cCcCCcc
Confidence 9999864
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.55 E-value=6.6e-14 Score=109.11 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------------------CCCCccceeeEEEEEEe
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVL 65 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 65 (173)
......+++++|.+++|||||++.|++....... ....+.|..........
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3456689999999999999999999653211000 01134566666666666
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCC-------HHHHHHHHHHHHHHcccccc
Q 043441 66 KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFP-------QEEEAALHSWQTLFGKKVFD 138 (173)
Q Consensus 66 ~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~ 138 (173)
.+..+.+|||||+.+ +...+...+..+|++++|+|+++... ......+..+... . ..
T Consensus 93 -~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~-v~ 156 (439)
T 3j2k_7 93 -EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---G-VK 156 (439)
T ss_pred -CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---C-CC
Confidence 677999999999653 33333455667899999999985542 2223333322222 1 13
Q ss_pred eEEEEEeCCCCCC
Q 043441 139 YMIVVFTGGDELE 151 (173)
Q Consensus 139 ~~~iv~tk~D~~~ 151 (173)
++++++||+|+..
T Consensus 157 ~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 157 HLIVLINKMDDPT 169 (439)
T ss_pred eEEEEeecCCCcc
Confidence 4999999999864
No 153
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.55 E-value=1.6e-14 Score=118.16 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcc-------------ceee-------------------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGV-------------TSTC------------------------- 58 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~-------------t~~~------------------------- 58 (173)
.+..+|+++|.+|+|||||+|+|+|......+..+... +...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 35689999999999999999999998764443322110 0000
Q ss_pred --------------EEEEEEeeCC----ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHH
Q 043441 59 --------------EMQRTVLKDG----QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQE 120 (173)
Q Consensus 59 --------------~~~~~~~~~~----~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~ 120 (173)
....+.+ .. ..+.+|||||+.+... ....+..++..+|++++|+++++..+..
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~-p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~ 217 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEY-PLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLG 217 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEE-CCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHH
T ss_pred HHHhhccccccccceEEEEEc-cchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchh
Confidence 0000011 00 3689999999875211 2233344566789999999998777776
Q ss_pred HHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 121 EEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+...+. +.+.. ...|+++|+||+|+...
T Consensus 218 e~~~l~---~~l~~-~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 218 ERRYLE---NYIKG-RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHH---HHTTT-SCCCEEEEEECGGGGGG
T ss_pred HHHHHH---HHHHh-hCCCEEEEEECcccccc
Confidence 654432 22221 12679999999998754
No 154
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.55 E-value=3.6e-14 Score=105.90 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+++++|.+|+||||+++.+.+... .........|.......+. ....+.+|||||......+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v~--~~v~LqIWDTAGQErf~~~~--l------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHFS--TLIDLAVMELPGQLNYFEPS--Y------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEEC--SSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEEc--cEEEEEEEECCCchhccchh--h------hhhhh
Confidence 589999999999999998876542 2211222334333332221 45789999999988753210 1 11246
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+++++++++|+|.++++......+.+++.+........|++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 7899999999999876322222332333322111123799999999999865
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.7e-14 Score=113.85 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=80.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC-----------------------------CCCccceeeEEEEEEee
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMQRTVLK 66 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~ 66 (173)
..+..+|+++|.+++|||||+|+|++........ ...+.|..........
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 3457899999999999999999998753211100 0124455555555666
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-------CCHHHHHHHHHHHHHHcccccce
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-------FPQEEEAALHSWQTLFGKKVFDY 139 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 139 (173)
.+..+.+|||||+.. +...+...+..+|++|+|+++++. ........+..+... + ..+
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-g---i~~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHN 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-T---CCE
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-C---CCe
Confidence 778999999999864 344445678889999999999732 122222222222221 1 256
Q ss_pred EEEEEeCCCCCCC
Q 043441 140 MIVVFTGGDELED 152 (173)
Q Consensus 140 ~~iv~tk~D~~~~ 152 (173)
+++|+||+|+...
T Consensus 308 iIVVvNKiDl~~~ 320 (611)
T 3izq_1 308 LIIAMNKMDNVDW 320 (611)
T ss_dssp EEEEEECTTTTTT
T ss_pred EEEEEecccccch
Confidence 9999999999874
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.55 E-value=9.4e-15 Score=116.05 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcc----------------cc----CCCCccceeeEEEEEEeeCCceEEEEeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~v~Dt 76 (173)
...++|+++|.+|+|||||+|+|+...... .. ....+.|.........+ .+..+.+|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDT 89 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDT 89 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEEC
Confidence 356899999999999999999997211100 00 00123344444455566 7789999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
||+.+... ....+++.+|++++|+|+++.........++.+... ..|+++++||+|+...+
T Consensus 90 PG~~df~~-----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 90 PGHADFTE-----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCSTTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCSC
T ss_pred CCchhHHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcccc
Confidence 99876421 123456678999999999977777766665544432 27899999999997653
No 157
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.53 E-value=2e-14 Score=100.09 Aligned_cols=121 Identities=18% Similarity=0.116 Sum_probs=69.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-CccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
...+|+++|.+|+|||||+|.+++.. .+.....+.+.+... ..... ++. .+.++||+|..... .
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~l~~~Dt~~~~~~~----------~ 71 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLMV-DGESATIILLDMWENKGEN----------E 71 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEE--EEEEE-TTEEEEEEEECCCCC--------------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEE--EEEEE-CCeEEEEEEEEeccCcchh----------h
Confidence 45799999999999999999998632 122221112222222 22333 443 56789999965310 0
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....+++.++++++|++.++.-+... ..+.+.+.+.... ...|+++|.||+|+...
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRX 129 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGG
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhcc
Confidence 011234456799999999984433222 2344444443211 23689999999998754
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.53 E-value=1.1e-15 Score=121.22 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=82.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCI 97 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~ 97 (173)
+.++|+++|.+++|||||+++|++...... ...+.|............+..+.+|||||+..+.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~---------- 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA---------- 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH----------
Confidence 467899999999999999999987553222 22334444333333332456899999999876533222
Q ss_pred HhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 98 GLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..+..+|++++|+++.+.........++.+... . .|+++++||+|+...+
T Consensus 71 -~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 71 -RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---H--VPIVLAINKCDKAEAD 120 (537)
T ss_dssp -SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTTTS
T ss_pred -HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEecccccccc
Confidence 466788999999999877766665555444432 2 6899999999987543
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.53 E-value=1.1e-13 Score=108.93 Aligned_cols=119 Identities=15% Similarity=0.197 Sum_probs=79.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCc---c--ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAF---K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGM 91 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~---~--~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~ 91 (173)
.+..+++++|..++|||||+++|++.... + ......+.|.........+ .+..+.+|||||+.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~----------- 84 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA----------- 84 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------
Confidence 45689999999999999999999986510 0 0111223455544445555 67899999999953
Q ss_pred HHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 92 EIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++...+...+..+|++++|+|+++.........+..+... ..|.++++||+|+...
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-----~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-----NIPIIVVITKSDNAGT 140 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCBCEEEECTTSSCH
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-----CCCEEEEEECCCcccc
Confidence 3444444567788999999999876666665555544432 2567999999999863
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.52 E-value=3.2e-14 Score=106.63 Aligned_cols=118 Identities=19% Similarity=0.108 Sum_probs=76.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIV 94 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~ 94 (173)
....+|+++|.+|+|||||++.+++.... ....+ .+.......... .+. .+.+|||||.....
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 217 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIP--TVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD----------- 217 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCC--CSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC-cccCC--cccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------
Confidence 45589999999999999999999876532 22111 111111222233 444 45599999976422
Q ss_pred HHHHhccCCceEEEEEeecCCCCCHHHH--HHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 95 KCIGLAKDGIHAVLVGFSVRSRFPQEEE--AALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.....++..+|++++|+|+++..+.... .+++.+....+ ..|+++|+||+|+...
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 274 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc
Confidence 2233567889999999999844333221 34455555432 3799999999998754
No 161
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.52 E-value=7.8e-14 Score=111.24 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=75.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEE----EEEee---CCceEEEEeCCCCCCCCCCcHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVLK---DGQVVNVIDTPGLFDFSAGSEF 88 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~v~DtpG~~~~~~~~~~ 88 (173)
.....+|+++|.+|+|||||+|.+++...........+.+...... ..... .+..+.+|||||.........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~- 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ- 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH-
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH-
Confidence 4567899999999999999999999876321111111111111100 01110 256899999999665433222
Q ss_pred HHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCCc
Q 043441 89 VGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDNE 154 (173)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 154 (173)
.+++.++++++|+|++ .. .....+++.+.+..+ ..|+++|+||+|+.....
T Consensus 117 ----------~~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 117 ----------FFMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp ----------HHHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCC
T ss_pred ----------HHccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccc
Confidence 2344689999999997 33 334567777766533 279999999999986543
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.51 E-value=1.4e-13 Score=95.66 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=72.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGMEIVK 95 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~v~DtpG~~~~~~~~~~~~~~~~~ 95 (173)
...+++++|++|||||||++.+++........ +..........+.. .+. .+.+|||||........
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~--------- 95 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAIT--------- 95 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCC---------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhh---------
Confidence 45799999999999999999999866422111 11222222233444 554 45679999986532221
Q ss_pred HHHhccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 96 CIGLAKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
..++..++++++|+|..+..+... ..+++.+.+.. ....++++++||+|+.+.
T Consensus 96 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 96 --SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGG
T ss_pred --HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccc
Confidence 123456788999999873322111 23333333321 123789999999998653
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.51 E-value=2.4e-13 Score=104.68 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=78.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCC------ccc----c----CCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRA------FKS----R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~ 83 (173)
+..+|+++|..++|||||+++|++... +.. . ....+.|.......... .+..+.+|||||+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~--- 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHA--- 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChH---
Confidence 347899999999999999999987311 000 0 00123444444434444 56789999999954
Q ss_pred CCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EEEEEeCCCCCC
Q 043441 84 AGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MIVVFTGGDELE 151 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~ 151 (173)
++...+...+..+|++++|+|+++.........+..+... ..| +++++||+|+..
T Consensus 78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-----~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-----GVEHVVVYVNKADAVQ 133 (397)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCCEEEEEECGGGCS
T ss_pred --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCeEEEEEECcccCC
Confidence 2334444667889999999999876665555555444332 145 789999999985
No 164
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.50 E-value=1.1e-13 Score=106.79 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=75.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccce--------------ee-----EEEEEEeeCCceEEEEe
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTS--------------TC-----EMQRTVLKDGQVVNVID 75 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~--------------~~-----~~~~~~~~~~~~~~v~D 75 (173)
...+..+|+++|.+|+|||||+|+|++..... .......+. .. ....... ....+.++|
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiD 81 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFID 81 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceeccccccccccccccc-ccceEEEEE
Confidence 34567899999999999999999999853211 000000000 00 0000000 226889999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC-CHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 76 TPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF-PQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
|||..+ +.......+..+|++++|+++++.. .......+..+... +. .|+++|+||+|+.+.
T Consensus 82 tPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 82 APGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK 144 (403)
T ss_dssp CCCCGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred CCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch
Confidence 999643 2223334566789999999998665 44445555444433 22 589999999999865
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.50 E-value=8.9e-15 Score=115.15 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=79.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
++.++|+++|..++|||||+++|++....... ..+.|.........+ ++..+.+|||||+.++....
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~---------- 68 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMR---------- 68 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSB----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHH----------
Confidence 45689999999999999999999874422111 122333333333444 56789999999987754332
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+..+|++++|+++++.........+..+... ..|+++++||+|+...
T Consensus 69 -~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 69 -ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPEA 118 (501)
T ss_dssp -CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-----TCCEEEEEECSSSSTT
T ss_pred -HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-----CceEEEEEEecccccc
Confidence 2456678999999999865555444444444331 2689999999999754
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.50 E-value=6.2e-14 Score=108.25 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=79.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC-------Ccccc--C------CCCccceeeEEEEEEeeCCceEEEEeCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR-------AFKSR--A------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~ 80 (173)
.....+|+++|.+++|||||+++|++.. .+... . ...+.|.......... .+..+.+|||||+.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChH
Confidence 3456899999999999999999998731 11000 0 0123344444344444 56789999999977
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EEEEEeCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MIVVFTGGDELE 151 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~ 151 (173)
+. .......+..+|++++|+|+++.........+..+... ..| +++++||+|+..
T Consensus 87 ~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-----~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 DY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-----TCCCEEEEEECGGGCC
T ss_pred HH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCEEEEEEECccccC
Confidence 42 22223456688999999999877666555555544432 145 889999999985
No 167
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.49 E-value=2.3e-13 Score=111.34 Aligned_cols=121 Identities=23% Similarity=0.275 Sum_probs=80.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--c-C-------------CCCccceeeEEEEEEeeCCceEEEEeCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--R-A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--~-~-------------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~ 79 (173)
.....+|+++|.+|+|||||+|+|++...... + . ...+.|.........+ .+..+.+|||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence 45678999999999999999999984211000 0 0 0122333334444555 6788999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
.+.. .+.. .+++.+|++++|+|+++.........++.+.+. ..|+++|+||+|+...+
T Consensus 86 ~df~-------~~~~----~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 86 VDFT-------VEVE----RSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SSCC-------HHHH----HHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred cchH-------HHHH----HHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCccccc
Confidence 8642 1222 233457999999999877777766665554442 27899999999998753
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.49 E-value=1.2e-13 Score=109.86 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc--------------------CCCCccceeeEEEEEEeeCCceEEEEeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR--------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~--------------------~~~~~~t~~~~~~~~~~~~~~~~~v~Dt 76 (173)
....+|+++|.+|+|||||+++|++....... ....+.|.........+ .+..+.+|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 35689999999999999999999853211000 00112233333344455 7789999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
||+.+.. ... ..++..+|++++|+|+++.........++.+.. ...|+++++||+|+...+
T Consensus 90 PG~~df~-------~~~----~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFS-------EDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCC-------HHH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCSC
T ss_pred CCChhHH-------HHH----HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCcccc
Confidence 9987642 112 245667899999999986665554444333322 127899999999998764
No 169
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=1.9e-13 Score=105.08 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=45.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEe--------------------eC---CceEEEEeC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KD---GQVVNVIDT 76 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~v~Dt 76 (173)
.+|+++|.+|+|||||+|+|++... ... ..+..|.......... .. ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~-~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIA-NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-ccc-CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3789999999999999999998762 111 1112222211111000 01 246899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR 116 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~ 116 (173)
||+.......+ .+.+.+...++.+|++++|+|+++.
T Consensus 79 pG~~~~a~~~~----~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhh----hHHHHHHHHHhcCCEEEEEEecccc
Confidence 99975322112 2222223567899999999999753
No 170
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=1.9e-12 Score=100.06 Aligned_cols=122 Identities=13% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc-CCCCccceeeEEEEEEee--------------C--------CceEEE
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLK--------------D--------GQVVNV 73 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~v 73 (173)
.+..+|+++|..++|||||+++|++....... ....+.|....+...... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999975321111 111223433222211110 0 157999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC-CHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 74 IDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF-PQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
|||||+. .+...+...+..+|++++|+++++.. .......+..+.. ++. .|+++++||+|+...
T Consensus 86 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 9999943 33344445667889999999998665 4444444443332 221 579999999999865
Q ss_pred C
Q 043441 153 N 153 (173)
Q Consensus 153 ~ 153 (173)
+
T Consensus 151 ~ 151 (408)
T 1s0u_A 151 K 151 (408)
T ss_dssp T
T ss_pred H
Confidence 3
No 171
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.49 E-value=4.8e-13 Score=109.44 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=79.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCC-c------cccC---------CCCccceeeEEEEEEeeCCceEEEEeCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRA-F------KSRA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~-~------~~~~---------~~~~~t~~~~~~~~~~~~~~~~~v~DtpG 78 (173)
......+|+++|.+|+|||||+++|+.... + ..+. ...+.|.........+ .+..+.+|||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG 86 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPG 86 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcC
Confidence 345678999999999999999999983110 0 0000 0123444444455555 678999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
+.+. ..+.. .+++.+|++++|+|+++.........+..+.+. ..|+++++||+|+...+
T Consensus 87 ~~df-------~~~~~----~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDF-------TIEVE----RSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTC-------HHHHH----HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred ccch-------HHHHH----HHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccCC
Confidence 8753 12222 334456999999999877776665555544432 27899999999998763
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.48 E-value=9.8e-13 Score=101.71 Aligned_cols=122 Identities=13% Similarity=0.214 Sum_probs=76.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc-cCCCCccceeeEEEEEEeeC----------------------CceEE
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKD----------------------GQVVN 72 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~----------------------~~~~~ 72 (173)
..+..+|+++|..++|||||+++|++...... .....+.|....+....+.. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 34568999999999999999999997532110 11112234333322211100 15799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC-CHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 73 VIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF-PQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 73 v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
+|||||+. .+..........+|++++|+++++.. .......+..+... +. .++++++||+|+..
T Consensus 87 iiDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 87 FIDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD 151 (410)
T ss_dssp EEECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred EEECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCC
Confidence 99999953 23333344556779999999998665 44444444444332 22 57999999999986
Q ss_pred C
Q 043441 152 D 152 (173)
Q Consensus 152 ~ 152 (173)
.
T Consensus 152 ~ 152 (410)
T 1kk1_A 152 K 152 (410)
T ss_dssp H
T ss_pred H
Confidence 4
No 173
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.48 E-value=1.3e-13 Score=107.44 Aligned_cols=119 Identities=22% Similarity=0.274 Sum_probs=72.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC-Ccccc----------------------------CCCCccceeeEEEEEEeeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRR-AFKSR----------------------------ASSSGVTSTCEMQRTVLKD 67 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~ 67 (173)
.+..+++++|..++|||||+++|++.. .+... -...+.|.......... .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 355899999999999999999998641 11100 00123454444445555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-------CCHHHHHHHHHHHHHHcccccceE
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-------FPQEEEAALHSWQTLFGKKVFDYM 140 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (173)
+..+.+|||||+.+ +...+...+..+|++++|+|+++. ........+..+... + ..++
T Consensus 83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~---~~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G---LDQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T---CTTC
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCeE
Confidence 77899999999875 222334577889999999999853 111222222222221 1 1468
Q ss_pred EEEEeCCCCCC
Q 043441 141 IVVFTGGDELE 151 (173)
Q Consensus 141 ~iv~tk~D~~~ 151 (173)
++++||+|+..
T Consensus 148 ivviNK~Dl~~ 158 (435)
T 1jny_A 148 IVAVNKMDLTE 158 (435)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEEcccCCC
Confidence 99999999986
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.47 E-value=1.4e-13 Score=107.89 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=74.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-Cccc-------------cC---------------CCCccceeeEEEEEEeeCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMQRTVLKDG 68 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~ 68 (173)
+..+++++|.+++|||||+|+|++.. .+.. +. ...+.|.......... .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 45899999999999999999998631 1100 00 0123444444444555 67
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHH----HHHHHHHHHHHcccccceEEEEE
Q 043441 69 QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEE----EAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 69 ~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
..+.+|||||+.+ +...+...+..+|++++|+|+++...... .+..+.+....... ..++++++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~-v~~iivvi 152 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG-VRQLIVAV 152 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT-CCEEEEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcC-CCeEEEEE
Confidence 7899999999663 33334467789999999999983321100 02222222211111 13599999
Q ss_pred eCCCCCC
Q 043441 145 TGGDELE 151 (173)
Q Consensus 145 tk~D~~~ 151 (173)
||+|+..
T Consensus 153 NK~Dl~~ 159 (458)
T 1f60_A 153 NKMDSVK 159 (458)
T ss_dssp ECGGGGT
T ss_pred Ecccccc
Confidence 9999984
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.46 E-value=6.6e-13 Score=102.51 Aligned_cols=126 Identities=15% Similarity=0.120 Sum_probs=74.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL 99 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (173)
..++|+|++|||||||+++|++......+. ...|.......+.......+.++||||+.+.......+...+. .
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~--~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl----~ 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----R 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----H
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCc--ccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHH----H
Confidence 458999999999999999999875422221 1222233333344412378999999999763221111112222 2
Q ss_pred ccCCceEEEEEeecCCCCCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 100 AKDGIHAVLVGFSVRSRFPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+++.++++++++ .-...+ ..+.+.+......-...|.++|+||+|....
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 235679999999996 222222 2333333332111123789999999998754
No 176
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.45 E-value=1.4e-12 Score=106.90 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=79.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC-ccc------cC---------CCCccceeeEEEEEEeeCC-------ceEE
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA-FKS------RA---------SSSGVTSTCEMQRTVLKDG-------QVVN 72 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~-~~~------~~---------~~~~~t~~~~~~~~~~~~~-------~~~~ 72 (173)
.....+|+++|..|+|||||++.|+.... +.. +. ...+.|.........+ .+ ..+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence 45678999999999999999999974311 100 00 0123344444444444 44 7899
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 73 VIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 73 v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+|||||..++. .+. ..+++.+|++|+|+|+++.........++.+.. . ..|+++++||+|+...
T Consensus 86 liDTPG~~df~-------~~~----~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~---~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFT-------IEV----ERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK---Y--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchH-------HHH----HHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH---c--CCCEEEEEeCCCcccc
Confidence 99999987531 122 234556799999999986665555444443332 1 2789999999999876
Q ss_pred C
Q 043441 153 N 153 (173)
Q Consensus 153 ~ 153 (173)
+
T Consensus 150 ~ 150 (704)
T 2rdo_7 150 N 150 (704)
T ss_pred c
Confidence 3
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.45 E-value=3e-13 Score=108.69 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=76.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee-----------------CCceEEEEeCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLF 80 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~v~DtpG~~ 80 (173)
+.++|+++|.+++|||||+++|++....... +.+.|.........+. ....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4579999999999999999999875432111 1112211111111110 11258999999998
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
++..... ..++.+|++++|+|+++.+.......++.+... ..|+++++||+|+..
T Consensus 82 ~F~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred HHHHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence 7643322 356678999999999977777666666655432 278999999999974
No 178
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.2e-12 Score=99.68 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=68.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCC----CCccceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCc---H
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGS---E 87 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~---~~~~~~~v~DtpG~~~~~~~~---~ 87 (173)
-...|+|+|++|+|||||+|.|+|......+.. ....+.......... .....+.++||||+....... .
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 345789999999999999999999765322210 001122211111111 012368999999998642211 1
Q ss_pred HHHH----HHHHH-------HHhccCC--ceEEEEEeecC-CCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 88 FVGM----EIVKC-------IGLAKDG--IHAVLVGFSVR-SRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 88 ~~~~----~~~~~-------~~~~~~~--~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
.+.. .+... +...+.+ +|+++++++.+ ..++..+..+++.+. . ..++++|+||+|++..
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~--~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E--KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T--TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c--cCcEEEEEEcccCccH
Confidence 1111 11111 1223333 45667776664 477777766655553 2 2789999999999864
No 179
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.43 E-value=4.6e-13 Score=102.18 Aligned_cols=101 Identities=13% Similarity=0.185 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhc
Q 043441 21 TVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLA 100 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (173)
+++++|.+++|||||+++|+ ..+.|.........+ .+..+.+|||||+.+. ...+. ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~----~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLI----TA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHH----HH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHH----HH
Confidence 89999999999999999998 123344444445555 6678999999998753 22233 33
Q ss_pred cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceE-EEEEe-CCCC
Q 043441 101 KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYM-IVVFT-GGDE 149 (173)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~iv~t-k~D~ 149 (173)
++.+|++++|+| ...........+..+... + .|. ++++| |+|+
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-G----FKHGIIALTRSDST 125 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence 457799999999 656555555555444432 2 344 88898 9998
No 180
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=95.97 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-----ccceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCc---HH
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSS-----GVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGS---EF 88 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~---~~~~~~~v~DtpG~~~~~~~~---~~ 88 (173)
.+++++|++|||||||+|.|+|......+.... ..+.......... .-...+.++|+||+....... +.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 579999999999999999999866544442111 1111111111111 012368999999997643211 12
Q ss_pred HH----HHHHHHHHh----------ccCCceEEEEEeec-CCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 89 VG----MEIVKCIGL----------AKDGIHAVLVGFSV-RSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 89 ~~----~~~~~~~~~----------~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+. .++...... ...++++.+++++. +..++..+...++.+.+. .++++|++|+|.+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 21 112221111 22345777888875 357888887776666543 679999999999975
No 181
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.40 E-value=1.1e-12 Score=105.33 Aligned_cols=120 Identities=21% Similarity=0.265 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCC-ccc-c--C---------CCCccceeeEEEEEEee--C--CceEEEEeCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRA-FKS-R--A---------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLF 80 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~-~--~---------~~~~~t~~~~~~~~~~~--~--~~~~~v~DtpG~~ 80 (173)
..++++++|..++|||||+++|+.... ... + . ...+.|.........+. + ...+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 457999999999999999999975211 000 0 0 01123333222233331 1 2478899999987
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
++ ..++. .++..+|++++|+|+++.........+....+ . ..|+++++||+|+...+
T Consensus 85 dF-------~~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~--~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 85 DF-------SYEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVE---Q--DLVIIPVINKIDLPSAD 141 (600)
T ss_dssp GG-------HHHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---T--TCEEEEEEECTTSTTCC
T ss_pred hH-------HHHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---C--CCCEEEEEeccCccccC
Confidence 53 22233 33456799999999987766655443333222 2 27899999999998653
No 182
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.39 E-value=1e-12 Score=105.62 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=69.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCC-cccc------------CCCCccceeeEEEEEEee--C--CceEEEEeCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRA-FKSR------------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLF 80 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~~~v~DtpG~~ 80 (173)
..++++++|..++|||||+++|+.... .... -...+.|.........+. + ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 457999999999999999999975221 0000 001233443333444442 1 2578899999987
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
++ ..+... ++..+|++++|+|+++.........+....+ . ..|+++++||+|+...+
T Consensus 83 dF-------~~ev~~----~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~--~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 83 DF-------SYEVSR----SLAACEGALLVVDAGQGVEAQTLANCYTAME---M--DLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp GG-------HHHHHH----HHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---T--TCEEEEEEECTTSTTCC
T ss_pred HH-------HHHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C--CCCEEEeeeccCccccc
Confidence 53 223333 3445699999999987776655444333322 2 27899999999998753
No 183
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.39 E-value=4.5e-12 Score=101.16 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=85.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCc------------------c--ccCCCCccceeeEEEEEEeeCCceEEEEeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAF------------------K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~------------------~--~~~~~~~~t~~~~~~~~~~~~~~~~~v~Dt 76 (173)
.+.++|+|+|-.++|||||..+|+-.... + ..-...+.|.........+ ++..+.++||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDT 107 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDT 107 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeC
Confidence 46789999999999999999988621100 0 0012235566666677777 8899999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 77 PGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
||..++. .+..+.+. -+|+.++|+|+.+.........++...+. . .|.++++||+|+...+
T Consensus 108 PGHvDF~-------~Ev~raL~----~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~--lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 108 PGHQDFS-------EDTYRVLT----AVDSALVVIDAAKGVEAQTRKLMDVCRMR---A--TPVMTFVNKMDREALH 168 (548)
T ss_dssp CCGGGCS-------HHHHHHHH----SCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSCCCC
T ss_pred CCcHHHH-------HHHHHHHH----hcCceEEEeecCCCcccccHHHHHHHHHh---C--CceEEEEecccchhcc
Confidence 9999873 34444443 45999999999988888877776665553 2 7899999999998764
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.38 E-value=5.5e-14 Score=113.12 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=59.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccc--------------c---------------CCCCccceeeEEEEEEee
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLK 66 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~ 66 (173)
..+..+|+++|.+++|||||++.|++...... + -...+.|..........
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 34567899999999999999999964210000 0 00224455555555555
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC-----C--CHHHHHHHHHHHHHHcccccce
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR-----F--PQEEEAALHSWQTLFGKKVFDY 139 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~ 139 (173)
.+..+.+|||||+.+.... +...+..+|++|+|+++++. + .......+..+... + ..+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-g---ip~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-G---ISE 317 (592)
T ss_dssp ------CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-S---CCC
T ss_pred CCeEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCe
Confidence 5678999999998753211 12345678999999999743 2 33333443333332 2 135
Q ss_pred EEEEEeCCCCCCC
Q 043441 140 MIVVFTGGDELED 152 (173)
Q Consensus 140 ~~iv~tk~D~~~~ 152 (173)
+++|+||+|+...
T Consensus 318 iIvviNKiDl~~~ 330 (592)
T 3mca_A 318 IVVSVNKLDLMSW 330 (592)
T ss_dssp EEEEEECGGGGTT
T ss_pred EEEEEeccccccc
Confidence 8999999998763
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.38 E-value=3.7e-12 Score=103.89 Aligned_cols=117 Identities=26% Similarity=0.256 Sum_probs=79.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCc--cccCC--------------CCccceeeEEEEEEeeCCceEEEEeCCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAF--KSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~ 80 (173)
....+++++|.+|+|||||++.|++.... ..+.. ..+.+...+...... ....+.+|||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 46789999999999999999999843211 00100 012344444445555 67789999999976
Q ss_pred CCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 81 DFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
+. ..+.. .+++.+|++++|+|+.+........+++.+... ..|+++++||+|+.
T Consensus 86 ~f-------~~~~~----~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DF-------VGEIR----GALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp GG-------HHHHH----HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred ch-------HHHHH----HHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 52 12233 334456999999999877777766666555542 27899999999998
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.38 E-value=7e-12 Score=106.20 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=77.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC------ccc--------cCCCCccceeeEEEEEEeeCCceEEEEeCCCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA------FKS--------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~ 81 (173)
..+..+|+++|..++|||||+++|++... +.. .....+.|.......... .+..+.+|||||+.
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe- 370 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA- 370 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH-
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH-
Confidence 34568999999999999999999986310 000 001123333333333343 56789999999955
Q ss_pred CCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EEEEEeCCCCCC
Q 043441 82 FSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MIVVFTGGDELE 151 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~iv~tk~D~~~ 151 (173)
++.......+..+|++|+|+|+++.........+..+... + .| +++++||+|+..
T Consensus 371 ----------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 371 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-G----VPYIIVFLNKCDMVD 426 (1289)
T ss_dssp ----------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTCC
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-C----CCeEEEEEeeccccc
Confidence 3344445678899999999999876665555555544432 1 45 789999999985
No 187
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=3.8e-12 Score=98.23 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=69.9
Q ss_pred CCccE--EEEEcCCCCCHHHHHHHHhCCCCccccCC--CCccceeeEEEEEEeeCC---ceEEEEeCCCCCCCCCCc---
Q 043441 17 NGVRT--VVFVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGS--- 86 (173)
Q Consensus 17 ~~~~~--i~lvG~~g~GKStlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~~~v~DtpG~~~~~~~~--- 86 (173)
.++.. ++|+|++|||||||+|.|+|......... ....+. ....+..... ..+.++|+||+.......
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~--~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~ 115 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQL--QSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSY 115 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEE--EEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceE--eeEEEEeecCccccccchhhhhhhhhccccchhh
Confidence 34445 99999999999999999999753221111 111111 1122211111 268999999998642211
Q ss_pred HH----HHHHHHHHHHhc---------cCC--ce-EEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 87 EF----VGMEIVKCIGLA---------KDG--IH-AVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 87 ~~----~~~~~~~~~~~~---------~~~--~~-~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
.. +..++...+... ..+ +| +++|++++...++..+...++.+. .. .++++|+||+|.+
T Consensus 116 ~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~--~~vI~Vi~KtD~L 189 (427)
T 2qag_B 116 KPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SK--VNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SC--SEEEEEESCGGGS
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hC--CCEEEEEcchhcc
Confidence 11 122222222221 112 34 366677777677777766555543 22 7899999999999
Q ss_pred CC
Q 043441 151 ED 152 (173)
Q Consensus 151 ~~ 152 (173)
..
T Consensus 190 t~ 191 (427)
T 2qag_B 190 SK 191 (427)
T ss_dssp CH
T ss_pred ch
Confidence 75
No 188
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.35 E-value=9.3e-13 Score=103.40 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=65.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC-Cccc-------------c---------------CCCCccceeeEEEEEEeeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRR-AFKS-------------R---------------ASSSGVTSTCEMQRTVLKD 67 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (173)
.+..+|+++|..++|||||++.|+... .+.. + -...+.|.......... .
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 456789999999999999999997421 0100 0 00123444444444555 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHH----HHHHHHHHHHHHcccccce-EEE
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQE----EEAALHSWQTLFGKKVFDY-MIV 142 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~-~~i 142 (173)
+..+.+|||||+.+. ...+...+..+|++|+|+|+++..-.. ..++.+.+...... ..| +++
T Consensus 120 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~--~vp~iiv 186 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVV 186 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEE
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc--CCCEEEE
Confidence 788999999997642 222334567889999999998542100 01122222222111 144 999
Q ss_pred EEeCCCCCC
Q 043441 143 VFTGGDELE 151 (173)
Q Consensus 143 v~tk~D~~~ 151 (173)
++||+|+..
T Consensus 187 viNK~Dl~~ 195 (467)
T 1r5b_A 187 VINKMDEPS 195 (467)
T ss_dssp EEECTTSTT
T ss_pred EEECccCCC
Confidence 999999964
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.33 E-value=1.6e-11 Score=91.18 Aligned_cols=130 Identities=21% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC-----ccceeeEEEEEEe---eCCceEEEEeCCCCCCCCC---C
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS-----GVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSA---G 85 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~---~~~~~~~v~DtpG~~~~~~---~ 85 (173)
.-..+|+|+|++|+|||||+|.|++...+....... ..+.......... .....+.++||||+..... .
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 344788999999999999999999863332211110 0111111111111 0234789999999953211 0
Q ss_pred cHHHHHHHH----HHHHh---------ccCCceEEEEEeecCC-CCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCC
Q 043441 86 SEFVGMEIV----KCIGL---------AKDGIHAVLVGFSVRS-RFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELE 151 (173)
Q Consensus 86 ~~~~~~~~~----~~~~~---------~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~ 151 (173)
.......+. ..+.. ...++++++++.+.+. .+...+.. .++.. ... .++++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l-~~~--~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAI-HNK--VNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHH-TTT--SCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHH-Hhc--CCEEEEEEeCCCCC
Confidence 111111111 11111 1223456777776543 47776643 34443 222 68999999999986
Q ss_pred C
Q 043441 152 D 152 (173)
Q Consensus 152 ~ 152 (173)
.
T Consensus 170 ~ 170 (301)
T 2qnr_A 170 L 170 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.30 E-value=4.1e-12 Score=105.94 Aligned_cols=118 Identities=24% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC--------------CCCccceeeEEEEEEee---------------C
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLK---------------D 67 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~ 67 (173)
....+|+++|..++|||||+++|++........ ...+.|.........+. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456799999999999999999998642111000 01122332222233331 1
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+..+.+|||||+.++.. +.. .+++.+|++++|+|+.+.........+..+.. . ..|+++++||+
T Consensus 97 ~~~i~liDTPG~~df~~-------~~~----~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~--~~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS-------EVT----AALRVTDGALVVVDTIEGVCVQTETVLRQALG---E--RIKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSCH-------HHH----HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---T--TCEEEEEEECH
T ss_pred CceEEEEECcCchhhHH-------HHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---c--CCCeEEEEECC
Confidence 45789999999987531 122 34456799999999987777666544433322 2 27899999999
Q ss_pred CCC
Q 043441 148 DEL 150 (173)
Q Consensus 148 D~~ 150 (173)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 987
No 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.7e-12 Score=93.26 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred CceEEEEEeecCCC--CCHHH-HHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 103 GIHAVLVGFSVRSR--FPQEE-EAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 103 ~~~~ii~v~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++|++++|+|+++. .+.+. ..++..+.+.... ...|+++|.||+|+...
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBCH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccccc
Confidence 58999999999854 34332 3455555443211 23799999999998654
No 192
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.24 E-value=1e-10 Score=96.15 Aligned_cols=121 Identities=26% Similarity=0.299 Sum_probs=82.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCc-------ccc---------CCCCccceeeEEEEEEee------CCceEEEE
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAF-------KSR---------ASSSGVTSTCEMQRTVLK------DGQVVNVI 74 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~-------~~~---------~~~~~~t~~~~~~~~~~~------~~~~~~v~ 74 (173)
++.++|+|+|..++|||||..+|+-.... ..+ -...+.|.........+. ++..+.++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56789999999999999999988631110 001 112345555555555552 13478999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 75 DTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
||||+.++ ..+..+.+..+ |+.++|+|+.+......+..++...+. . .|.++++||+|+...+
T Consensus 91 DTPGHvDF-------~~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~--lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDF-------TIEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---G--VPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTC-------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---T--CCEEEEEECSSSTTCC
T ss_pred eCCCCccc-------HHHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---C--CCeEEEEccccccCcc
Confidence 99999987 44566555555 999999999988888877776665554 2 7899999999998763
No 193
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.22 E-value=1e-11 Score=100.85 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=84.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh---CCCCc----cccCC---------CCccceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSIL---GRRAF----KSRAS---------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~---~~~~~----~~~~~---------~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
.++|+++|..++|||||..+|+ |...- ..+.. ..+.|.........+ ++..+.++||||+.++
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 4689999999999999999885 21110 00100 014555556666677 7888999999999986
Q ss_pred CCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCCC
Q 043441 83 SAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELEDN 153 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 153 (173)
..+..+. ++-+|+.++|+|+.+......+..++...+. . .|.++++||+|+...+
T Consensus 81 -------~~Ev~ra----L~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~--lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 -------LAEVYRS----LSVLDGAILLISAKDGVQAQTRILFHALRKM---G--IPTIFFINKIDQNGID 135 (638)
T ss_dssp -------HHHHHHH----HTTCSEEECCEESSCTTCSHHHHHHHHHHHH---T--CSCEECCEECCSSSCC
T ss_pred -------HHHHHHH----HHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCeEEEEeccccccCC
Confidence 3345544 4456999999999888887777766666554 2 6889999999998764
No 194
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.22 E-value=5.2e-13 Score=101.83 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=69.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCcc-----ccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
..+++++|.+|+|||||+|+|++..... .....++.|..... ... ...+.++||||+.+.....+.+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 4689999999999999999999863211 11122333433332 222 23488999999987653333232222
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+. ....++.++++++....+-......++.+.. ...|+++++||.|++..
T Consensus 236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-----~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG-----GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEE
T ss_pred HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEecC-----CCceEEEEecCcccccc
Confidence 22221 2346677788887731111111111111211 22689999999999965
No 195
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.20 E-value=1.3e-10 Score=93.93 Aligned_cols=129 Identities=18% Similarity=0.141 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCc-cccCCCCcccee----------e-E----------------------------
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAF-KSRASSSGVTST----------C-E---------------------------- 59 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~----------~-~---------------------------- 59 (173)
+.++|+|++||||||+++.|+|...+ .+|......... . .
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999997533 233222211110 0 0
Q ss_pred ------------EEEEEeeCCceEEEEeCCCCCCC--CCCcHHHHHHHHHHHHhccCCce-EEEEEeecCCCCCHHHHHH
Q 043441 60 ------------MQRTVLKDGQVVNVIDTPGLFDF--SAGSEFVGMEIVKCIGLAKDGIH-AVLVGFSVRSRFPQEEEAA 124 (173)
Q Consensus 60 ------------~~~~~~~~~~~~~v~DtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~ii~v~~~~~~~~~~~~~~ 124 (173)
...........+.++|.||+... .........++...+..+..... .+++++.....+. ....
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence 00011112246899999998753 22233345566666666544444 4444555432332 2234
Q ss_pred HHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 125 LHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 125 ~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
++.+.+.-... .++++|+||+|++..
T Consensus 204 l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcC--CceEEEecchhhcCc
Confidence 44455543222 689999999999965
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.19 E-value=2.4e-11 Score=92.98 Aligned_cols=94 Identities=18% Similarity=0.086 Sum_probs=49.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC----------------CceEEEEeCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPG 78 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~v~DtpG 78 (173)
......+++++|.+|+|||||+|+|++... .....+..|.......+..+. ...+.++||||
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 445678999999999999999999998763 111122233322222222211 23589999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 79 LFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
+.......+.+...+ ...++.+|++++|+|+.
T Consensus 96 l~~~as~~~glg~~~----l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAF----LSHISACDGIFHLTRAF 127 (396)
T ss_dssp -----------CCHH----HHHHHTSSSEEEEEEC-
T ss_pred cccccchhhHHHHHH----HHHHHhcCeEEEEEecC
Confidence 987543222222222 34556789999999986
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=1.3e-11 Score=93.48 Aligned_cols=90 Identities=16% Similarity=0.045 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS 83 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~v~DtpG~~~~~ 83 (173)
.+++++|.+|+|||||+|+|++....... .+..|.......+.++. ...+.++||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~--~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN--YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999999986621111 11223222222222211 2479999999998642
Q ss_pred CCcHHHHHHHHHHHHhccCCceEEEEEeecCC
Q 043441 84 AGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRS 115 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~ 115 (173)
...+.+..++. ..++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl----~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFL----ANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHH----HHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHH----HHHHhcCeEEEEEecCC
Confidence 11111222222 23567899999999974
No 198
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.19 E-value=4.8e-13 Score=102.07 Aligned_cols=123 Identities=20% Similarity=0.165 Sum_probs=72.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC-----CCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEI 93 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~ 93 (173)
..+++++|.+|+|||||+|+|++. ..... ...++.|..... ... ...+.++||||+.......+.+..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 468999999999999999999986 21111 122334444333 222 33489999999987643333332222
Q ss_pred HHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 94 VKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
...+. ...+++.++++++....+-......++.+.. ...++++++||.|.+..
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-----~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKG-----GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEE
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEccC-----CCceEEEEecCCccccc
Confidence 22221 1256788899988842211111111111111 22689999999999864
No 199
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=5.4e-11 Score=91.15 Aligned_cols=96 Identities=15% Similarity=0.039 Sum_probs=61.7
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCC-----------------ceEEEEe
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVID 75 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~v~D 75 (173)
-.....+.+++++|++|||||||+|+|++....... ..+..|.......+.. .+ ..+.++|
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence 334566789999999999999999999986531111 1222233332223333 22 3579999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC
Q 043441 76 TPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR 114 (173)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (173)
+||+.......+.+...+. ..++.+|++++++++.
T Consensus 92 ~pGl~~~~s~~e~L~~~fl----~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFL----SHVRAVDAIYQVVRAF 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHH----HHHTTCSEEEEEEECC
T ss_pred ccccccCCcHHHHHHHHHH----HHHHHHHHHHHHHhcc
Confidence 9999876544443333333 3345779999999985
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.15 E-value=7.2e-11 Score=89.42 Aligned_cols=25 Identities=24% Similarity=0.069 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.....++|+|++|||||||+|.|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.11 E-value=1.2e-10 Score=88.55 Aligned_cols=90 Identities=19% Similarity=0.122 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEee--------------------CCceEEEEeCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL 79 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~v~DtpG~ 79 (173)
.+++++|.+|+|||||+|+|++....... .+..|..........+ ....+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~--~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN--YPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS--CCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC--CCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 46899999999999999999985421111 1112222111111110 2357999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCC
Q 043441 80 FDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRS 115 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~ 115 (173)
.......+.+..++.. .++.+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~----~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLA----HIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHH----HHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHH----HHHhCCEEEEEEECCC
Confidence 8765433333334443 3456799999999974
No 202
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.09 E-value=5.6e-10 Score=89.48 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCccceeeEEEEEE--eeCCceEEEEeCCCCCCCCC-CcHHHH
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSA-GSEFVG 90 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~v~DtpG~~~~~~-~~~~~~ 90 (173)
...+..+|+|+|.+|+|||||+|+|+|... +..+....+.|......... ...+..+.++||||+.+... ......
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 345678899999999999999999999764 22221222333332211111 11467899999999997533 121111
Q ss_pred HHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHH
Q 043441 91 MEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQT 130 (173)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~ 130 (173)
.+...+ .... . ++++++...++..+...+..+.+
T Consensus 114 -~~fala-~lls--s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 114 -WIFALA-VLLS--S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp -HHHHHH-HHHC--S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred -HHHHHH-HHhc--C--eEEEECCCCccHHHHHHHHHHHH
Confidence 222111 1111 2 45566655788877665555444
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.08 E-value=1.4e-09 Score=85.89 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=70.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh------CCCCccccCCC-Cccc----------eeeEEEEE----------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL------GRRAFKSRASS-SGVT----------STCEMQRT---------------- 63 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~~-~~~t----------~~~~~~~~---------------- 63 (173)
.+..+|+++|.+|+||||+++.|+ |.......... .+.. ........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 55432111100 0000 00111110
Q ss_pred -EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccce-EE
Q 043441 64 -VLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDY-MI 141 (173)
Q Consensus 64 -~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 141 (173)
.. .+..+++|||||.... ...+..++....... .+|.+++|+|+..... .....+.+.+. .+ ..
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~i--~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~g 244 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANAI--QPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVAS 244 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHHH--CCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCC
T ss_pred HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhhh--cCceEEEEEecccccc--HHHHHHHHHhh------cCceE
Confidence 01 4557999999998753 223344444443322 6789999999975433 22333333332 45 48
Q ss_pred EEEeCCCCCCC
Q 043441 142 VVFTGGDELED 152 (173)
Q Consensus 142 iv~tk~D~~~~ 152 (173)
+|+||+|....
T Consensus 245 vVlNK~D~~~~ 255 (504)
T 2j37_W 245 VIVTKLDGHAK 255 (504)
T ss_dssp EEEECTTSCCC
T ss_pred EEEeCCccccc
Confidence 99999998754
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.06 E-value=5.3e-10 Score=82.28 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=42.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~ 87 (173)
....+++++|.+|+|||||+|+|++......+. .++.|...+. .. .+..+.++||||+.......+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW--VK--VGKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEE--EE--eCCCEEEEECcCcCCCCCCCH
Confidence 456799999999999999999999977543332 2234444432 22 245789999999998755443
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.04 E-value=2.6e-10 Score=86.08 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=23.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.....+++++|++|+||||++|.|++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 35678999999999999999999964
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.02 E-value=4.2e-10 Score=85.44 Aligned_cols=63 Identities=19% Similarity=0.065 Sum_probs=39.7
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeC
Q 043441 67 DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 67 ~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
.+..++++||||+.+. .. .....+|.+++|++.... ... +.+.... ...|.++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~----------~~----~~~~~aD~vl~V~d~~~~-~~~-----~~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS----------EV----AVANMVDTFVLLTLARTG-DQL-----QGIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH----------HH----HHHTTCSEEEEEEESSTT-CTT-----TTCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH----------HH----HHHHhCCEEEEEECCCCC-ccH-----HHHHHhH---hhcCCEEEEEC
Confidence 4568999999997641 11 123678999999998622 111 1111111 12589999999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
+|+...
T Consensus 227 ~Dl~~~ 232 (355)
T 3p32_A 227 ADGEHH 232 (355)
T ss_dssp CCGGGH
T ss_pred CCCcCh
Confidence 998743
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.02 E-value=1e-09 Score=79.50 Aligned_cols=76 Identities=14% Similarity=-0.050 Sum_probs=42.0
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHH-HHHHHHHHHcccccceEEEEEeCCC
Q 043441 70 VVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEA-ALHSWQTLFGKKVFDYMIVVFTGGD 148 (173)
Q Consensus 70 ~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~iv~tk~D 148 (173)
.++++||||..+. .....+...+...+.. +++++++|+....+..+.. ......... .....|+++|+||+|
T Consensus 110 d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 110 DYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVD 182 (262)
T ss_dssp SEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGG
T ss_pred CEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccc
Confidence 7899999997642 1111111112223355 8899999986444444322 111111111 112368999999999
Q ss_pred CCCC
Q 043441 149 ELED 152 (173)
Q Consensus 149 ~~~~ 152 (173)
+...
T Consensus 183 ~~~~ 186 (262)
T 1yrb_A 183 LLSE 186 (262)
T ss_dssp GCCH
T ss_pred cccc
Confidence 8754
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.00 E-value=2.2e-09 Score=82.75 Aligned_cols=120 Identities=20% Similarity=0.153 Sum_probs=69.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcccee-eEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKC 96 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~ 96 (173)
....++|+|++|||||||+|.|+|......+....+.+.. .............+.++|+||+...... ..++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH----HHHHHHH
Confidence 3458999999999999999999997655555433322211 0111111112246899999998743221 1222222
Q ss_pred HHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCC
Q 043441 97 IGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDEL 150 (173)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~ 150 (173)
.. ....+.+++ ++.. ..........+.+... ..|+++|+||.|.+
T Consensus 144 ~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll 188 (413)
T 1tq4_A 144 MK--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD 188 (413)
T ss_dssp TT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred cC--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence 22 222344444 6665 4445555555555442 27899999998876
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.97 E-value=8.1e-11 Score=88.74 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...+..++++|++|||||||+|.|++
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999984
No 210
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.95 E-value=1.3e-08 Score=76.50 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=57.5
Q ss_pred eeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCC-------C-CCHHHHHHHHH
Q 043441 56 STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRS-------R-FPQEEEAALHS 127 (173)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~-------~-~~~~~~~~~~~ 127 (173)
.......... ++..+.+|||+|.. .++..+..++++++++|+|++.++ . -...-....++
T Consensus 149 iGi~~~~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~ 216 (340)
T 4fid_A 149 TGIHEYDFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAV 216 (340)
T ss_dssp CSCEEEEEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHH
T ss_pred eeeEEEEEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHH
Confidence 3334445555 67889999999943 566677789999999999999971 1 11222345555
Q ss_pred HHHHHccc--ccceEEEEEeCCCCCC
Q 043441 128 WQTLFGKK--VFDYMIVVFTGGDELE 151 (173)
Q Consensus 128 l~~~~~~~--~~~~~~iv~tk~D~~~ 151 (173)
+.+..... ...|+++++||+|+..
T Consensus 217 ~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 217 FKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred HHHHhhhhccCCCeEEEEEECchhhh
Confidence 55554432 2369999999999874
No 211
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.94 E-value=1.2e-08 Score=76.45 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=58.5
Q ss_pred ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC-------CCCC-HHHHHHHH
Q 043441 55 TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR-------SRFP-QEEEAALH 126 (173)
Q Consensus 55 t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~-------~~~~-~~~~~~~~ 126 (173)
|.......... ++..+.+|||.|.. ..+..+..++++++++|+|++.+ +.-+ ..-...++
T Consensus 154 TiGi~~~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~ 221 (327)
T 3ohm_A 154 TTGIIEYPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA 221 (327)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH
T ss_pred eeeEEEEEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH
Confidence 33444455555 77899999999943 56666678999999999999775 2211 22245556
Q ss_pred HHHHHHccc--ccceEEEEEeCCCCCC
Q 043441 127 SWQTLFGKK--VFDYMIVVFTGGDELE 151 (173)
Q Consensus 127 ~l~~~~~~~--~~~~~~iv~tk~D~~~ 151 (173)
++.+..... ...|+++++||+|+..
T Consensus 222 ~~~~i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 222 LFRTIITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred HHHHHhhhhccCCceEEEEEECchhhh
Confidence 666665433 2369999999999864
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.87 E-value=2.1e-09 Score=78.28 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCccceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~ 84 (173)
.+++++|.+|+|||||+|+|++......+. ..+.|...+.. . .+..+.++||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWF--S--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE--E--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEE--E--eCCCEEEEECCCcccCcC
Confidence 589999999999999999999877543332 22344433322 2 345789999999998654
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.82 E-value=5.4e-08 Score=75.52 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=69.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCCccccCCCC-c----------cceeeEEEEEE---------------e
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL------GRRAFKSRASSS-G----------VTSTCEMQRTV---------------L 65 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~~~-~----------~t~~~~~~~~~---------------~ 65 (173)
++..++++|++|+||||++..|. |..+..-...+. + .......+... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999886 332211000000 0 00000011000 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 66 -KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 66 -~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
..+..++++||||.... ...+..++..+.... .+|.+++|+|+... .......+.+.+. .....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~g--q~a~~~a~~f~~~-----~~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTIG--QQAYNQALAFKEA-----TPIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGHHHHHHHHHHS-----CTTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCCc--hhHHHHHHHHHhh-----CCCeEEEE
Confidence 02357899999997652 234555555443333 46889999999732 2333333333332 14577999
Q ss_pred eCCCCCCC
Q 043441 145 TGGDELED 152 (173)
Q Consensus 145 tk~D~~~~ 152 (173)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99998754
No 214
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.81 E-value=2.7e-08 Score=75.37 Aligned_cols=81 Identities=10% Similarity=0.083 Sum_probs=55.0
Q ss_pred eEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC--------CHHHHHHHHHHH
Q 043441 58 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF--------PQEEEAALHSWQ 129 (173)
Q Consensus 58 ~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~--------~~~~~~~~~~l~ 129 (173)
........ ++..+.+|||+|... ++..+..++++++++|||++.++.- ...-.....++.
T Consensus 183 i~~~~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~ 250 (353)
T 1cip_A 183 IVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFD 250 (353)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHH
T ss_pred eEEEEEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHH
Confidence 33444455 677899999999653 3344457899999999999998421 122344555555
Q ss_pred HHHccc--ccceEEEEEeCCCCC
Q 043441 130 TLFGKK--VFDYMIVVFTGGDEL 150 (173)
Q Consensus 130 ~~~~~~--~~~~~~iv~tk~D~~ 150 (173)
+..... ...|+++++||.|+.
T Consensus 251 ~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 251 SICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHcCccccCCcEEEEEECcCch
Confidence 554432 236999999999986
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.73 E-value=6.7e-08 Score=71.78 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=68.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccC------CC-Ccc----------ceeeEEEEEE----------------
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRA------SS-SGV----------TSTCEMQRTV---------------- 64 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~------~~-~~~----------t~~~~~~~~~---------------- 64 (173)
++..++++|++||||||+++.|.+......+. .. ... .....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999997533211110 00 000 0000010000
Q ss_pred eeCCceEEEEeCCCCCCCCCCc-HHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEE
Q 043441 65 LKDGQVVNVIDTPGLFDFSAGS-EFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVV 143 (173)
Q Consensus 65 ~~~~~~~~v~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv 143 (173)
...+....++||+|........ .++.+.....+......++.+++++|+... ......++.+.+.. ...+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~-----~~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAV-----GLTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHH-----CCSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHc-----CCcEEE
Confidence 0012356799999986532111 222222222333456678888889998633 22233333333332 458899
Q ss_pred EeCCCCCC
Q 043441 144 FTGGDELE 151 (173)
Q Consensus 144 ~tk~D~~~ 151 (173)
+||.|...
T Consensus 254 vTh~d~~a 261 (304)
T 1rj9_A 254 VTKLDGTA 261 (304)
T ss_dssp EECTTSSC
T ss_pred EECCcccc
Confidence 99998764
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.73 E-value=2.7e-08 Score=77.13 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=69.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCCccccCC-CCc----------cceeeEEEEE---------------Ee
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL------GRRAFKSRAS-SSG----------VTSTCEMQRT---------------VL 65 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~-~~~----------~t~~~~~~~~---------------~~ 65 (173)
++..++++|++|+||||++..|. |..+..-... ..+ .......... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 57889999999999999999886 3222110000 000 0000000000 00
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 66 -KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 66 -~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
..+..++++||||..... .......++....... .++.+++|+|+... .+.....+.+.+.. ....+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEEE
Confidence 024578899999975411 1233455555554444 46888999999732 22233334444332 5588999
Q ss_pred eCCCCCC
Q 043441 145 TGGDELE 151 (173)
Q Consensus 145 tk~D~~~ 151 (173)
||+|.-.
T Consensus 246 TKlD~~a 252 (433)
T 3kl4_A 246 TKMDGTA 252 (433)
T ss_dssp ECGGGCS
T ss_pred ecccccc
Confidence 9999764
No 217
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.72 E-value=2.6e-08 Score=78.12 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC-------CCcc------c----eeeEEEEEE--------------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS-------SSGV------T----STCEMQRTV-------------- 64 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-------~~~~------t----~~~~~~~~~-------------- 64 (173)
...+..++|+|++||||||+++.|.+......+.. .... . ....+....
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 45678999999999999999999876332111110 0000 0 000010000
Q ss_pred --eeCCceEEEEeCCCCCCCCCCcHHHHHHHHH---HHHhc-cCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccc
Q 043441 65 --LKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK---CIGLA-KDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFD 138 (173)
Q Consensus 65 --~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (173)
...+..++++||+|.... ...+..++.+ .++.. ...++.+++++|+... .+....++.+.+.+ .
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~-----~ 439 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----G 439 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHT-----C
T ss_pred HHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhc-----C
Confidence 002346889999998753 2333333333 33322 2346788889998633 22233334444332 3
Q ss_pred eEEEEEeCCCCC
Q 043441 139 YMIVVFTGGDEL 150 (173)
Q Consensus 139 ~~~iv~tk~D~~ 150 (173)
...+|+||.|..
T Consensus 440 itgvIlTKLD~t 451 (503)
T 2yhs_A 440 LTGITLTKLDGT 451 (503)
T ss_dssp CSEEEEECGGGC
T ss_pred CCEEEEEcCCCc
Confidence 477899999974
No 218
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.69 E-value=1.2e-08 Score=71.98 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..++++++|.+|+||||+++.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.67 E-value=1.8e-08 Score=75.57 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCCcc-----------------ceeeEEEEEE---------------
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSSGV-----------------TSTCEMQRTV--------------- 64 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~-----------------t~~~~~~~~~--------------- 64 (173)
.++..++++|++||||||+++.|.+......+...... .....+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 56789999999999999999999864322111100000 0000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEE
Q 043441 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVV 143 (173)
Q Consensus 65 -~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv 143 (173)
...+..+.++||+|...... ....++....... .+|..++++|+... ..-...++.+.+.. ....++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~-----~it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAV-----KIDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHS-----CCCEEE
T ss_pred HHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhc-----CCCEEE
Confidence 00123567899999865322 2333444433333 35778888888633 22222333333221 457899
Q ss_pred EeCCCCCC
Q 043441 144 FTGGDELE 151 (173)
Q Consensus 144 ~tk~D~~~ 151 (173)
+||.|.-.
T Consensus 275 lTKlD~~a 282 (328)
T 3e70_C 275 LTKLDADA 282 (328)
T ss_dssp EECGGGCS
T ss_pred EeCcCCcc
Confidence 99999743
No 220
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.66 E-value=1.6e-07 Score=71.05 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|.|.....+|
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 56788999999999999999999997765544
No 221
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.65 E-value=8.7e-08 Score=69.48 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|+|...+..|
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 356788999999999999999999997654444
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.65 E-value=4.6e-08 Score=75.96 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=66.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC------CccccCCCC----------------------c-cceee-EE--EEE-E
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR------AFKSRASSS----------------------G-VTSTC-EM--QRT-V 64 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~------~~~~~~~~~----------------------~-~t~~~-~~--~~~-~ 64 (173)
.+..|+++|++|+||||+++.|.+.. .......+. . .+... .. ... .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999987621 110000000 0 00000 00 000 0
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccc-e-EEE
Q 043441 65 LKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFD-Y-MIV 142 (173)
Q Consensus 65 ~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~i 142 (173)
. .+..++++||||.... ...+..++..+ . ....+|.+++|+++.... . ..+.+ +.+... . + ..+
T Consensus 178 ~-~~~D~vIIDT~G~~~~---~~~l~~~l~~i-~-~~~~~d~vllVvda~~g~--~---~~~~~-~~~~~~--~~~i~gv 243 (432)
T 2v3c_C 178 F-KKADVLIIDTAGRHKE---EKGLLEEMKQI-K-EITNPDEIILVIDGTIGQ--Q---AGIQA-KAFKEA--VGEIGSI 243 (432)
T ss_dssp T-SSCSEEEEECCCSCSS---HHHHHHHHHHT-T-SSSCCSEEEEEEEGGGGG--G---HHHHH-HHHHTT--SCSCEEE
T ss_pred h-hCCCEEEEcCCCCccc---cHHHHHHHHHH-H-HHhcCcceeEEeeccccH--H---HHHHH-HHHhhc--ccCCeEE
Confidence 1 3457899999998752 23333344322 1 233689999999986332 2 22222 223222 3 4 889
Q ss_pred EEeCCCCCCC
Q 043441 143 VFTGGDELED 152 (173)
Q Consensus 143 v~tk~D~~~~ 152 (173)
|+||+|....
T Consensus 244 VlnK~D~~~~ 253 (432)
T 2v3c_C 244 IVTKLDGSAK 253 (432)
T ss_dssp EEECSSSCST
T ss_pred EEeCCCCccc
Confidence 9999998643
No 223
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.63 E-value=4e-08 Score=71.67 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=27.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|.|.....+|
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 46788999999999999999999997654444
No 224
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.62 E-value=1.2e-07 Score=72.23 Aligned_cols=32 Identities=38% Similarity=0.426 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|.|.....+|
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 56788999999999999999999997765444
No 225
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.62 E-value=1.4e-07 Score=71.50 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC------CCCcc-------c----eeeEEEEEEe-------------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-------T----STCEMQRTVL------------- 65 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~------~~~~~-------t----~~~~~~~~~~------------- 65 (173)
..++..++++|++||||||+++.|.+......+. ..... . ....+.....
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 4567899999999999999999997743221111 00000 0 0011111000
Q ss_pred ----eCCceEEEEeCCCCCCCCCCc-HHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceE
Q 043441 66 ----KDGQVVNVIDTPGLFDFSAGS-EFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYM 140 (173)
Q Consensus 66 ----~~~~~~~v~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (173)
..+....++||.|........ .++.++...++......++-+++++|++..++... .++.+.+.. ...
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~-----g~t 306 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----GIT 306 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----CCC
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc-----CCe
Confidence 012346799999987532111 22333333333445667887778888654443332 223333221 457
Q ss_pred EEEEeCCCCCC
Q 043441 141 IVVFTGGDELE 151 (173)
Q Consensus 141 ~iv~tk~D~~~ 151 (173)
++++||.|...
T Consensus 307 ~iiiThlD~~~ 317 (359)
T 2og2_A 307 GLILTKLDGSA 317 (359)
T ss_dssp EEEEESCTTCS
T ss_pred EEEEecCcccc
Confidence 89999998754
No 226
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.61 E-value=1.6e-07 Score=69.66 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=69.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC------CCCcc-------c----eeeEEEEEEe-------------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA------SSSGV-------T----STCEMQRTVL------------- 65 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~------~~~~~-------t----~~~~~~~~~~------------- 65 (173)
..++..++++|++||||||+++.|.+......+. ..... . ....+.....
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 4567899999999999999999997643221111 00000 0 0011110000
Q ss_pred ----eCCceEEEEeCCCCCCCCCCc-HHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceE
Q 043441 66 ----KDGQVVNVIDTPGLFDFSAGS-EFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYM 140 (173)
Q Consensus 66 ----~~~~~~~v~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (173)
..+....++||.|........ .++.++....+......++-+++++|++..++... .++.+.+.. ...
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~-----g~t 249 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----GIT 249 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----CCC
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc-----CCC
Confidence 012346789999987532111 22232333333345567887777888654443332 223333221 357
Q ss_pred EEEEeCCCCCC
Q 043441 141 IVVFTGGDELE 151 (173)
Q Consensus 141 ~iv~tk~D~~~ 151 (173)
++++||.|...
T Consensus 250 ~iiiThlD~~~ 260 (302)
T 3b9q_A 250 GLILTKLDGSA 260 (302)
T ss_dssp EEEEECCSSCS
T ss_pred EEEEeCCCCCC
Confidence 89999998764
No 227
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.60 E-value=4.8e-07 Score=64.27 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=26.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++++|++|||||||++.|.|...+..|
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 46678999999999999999999997654444
No 228
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.57 E-value=1.3e-07 Score=67.78 Aligned_cols=33 Identities=24% Similarity=0.129 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|.....+|
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 457789999999999999999999997654444
No 229
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.57 E-value=2.2e-07 Score=70.48 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|.....+|
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 357788999999999999999999997654444
No 230
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.57 E-value=3.9e-07 Score=69.08 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|.|.....+|
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 356788999999999999999999997654444
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=2.1e-08 Score=74.50 Aligned_cols=61 Identities=30% Similarity=0.324 Sum_probs=35.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC------ccceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~v~DtpG~~~~~ 83 (173)
++..++++|++|+|||||+|.|++......+.... ..|.... .... . ...++||||+....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSLE 238 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCccccc
Confidence 46799999999999999999999876554443321 1222211 1122 2 46899999998643
No 232
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.56 E-value=5.9e-07 Score=68.45 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=27.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
.++..++|+|++|||||||++.|.|.....+|.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence 466789999999999999999999977654443
No 233
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.53 E-value=5e-07 Score=68.40 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
-+++..++|+|++|||||||++.|.|......|.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 61 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 3567889999999999999999999977655443
No 234
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.53 E-value=3.6e-07 Score=69.12 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|.|......|
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 356788999999999999999999997754444
No 235
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.52 E-value=2.2e-07 Score=66.69 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++|+|++|||||||++.|.|...+..|
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 46778999999999999999999997654444
No 236
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.52 E-value=4.6e-07 Score=68.77 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|.|.....+|
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence 356788999999999999999999997754444
No 237
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.51 E-value=2.7e-07 Score=67.17 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|.|...+..|
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 356788999999999999999999997654444
No 238
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.50 E-value=1.7e-07 Score=69.55 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=38.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----c--cceeeEEEEEEeeCCceEEEEeCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~v~DtpG~~~ 81 (173)
.+..++++|++|+|||||+|.|+ ......+.... + .|.... .... .....++||||+..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~--~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPF--GKGSFVGDTPGFSK 228 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEE--TTTEEEESSCCCSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEc--CCCcEEEECcCcCc
Confidence 35789999999999999999999 66555554332 1 122111 1111 23468999999874
No 239
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.50 E-value=8.7e-08 Score=71.15 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++|+|++|||||||++.|+|......|
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 56789999999999999999999997654444
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.49 E-value=1.9e-07 Score=67.04 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
++ ..++++|++|||||||++.|.|...+..|
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 45 78999999999999999999997654443
No 241
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.48 E-value=5.2e-07 Score=68.69 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|......|
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 356788999999999999999999997755444
No 242
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.48 E-value=1.9e-06 Score=62.31 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++|+|++|||||||++.|.|...+..|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 46778999999999999999999997654333
No 243
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.47 E-value=2.2e-07 Score=68.00 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|.|.....+|
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 56788999999999999999999997654444
No 244
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.47 E-value=7.4e-07 Score=69.34 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..+...|.|+|++++|||||+|.|+|.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456788999999999999999999863
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.45 E-value=1.2e-07 Score=70.50 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC-------CCCcc----------ceeeEEEEE---------------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA-------SSSGV----------TSTCEMQRT--------------- 63 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-------~~~~~----------t~~~~~~~~--------------- 63 (173)
..++..++++|++|+||||++..|.+......+. ..... .........
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456789999999999999999886532111110 00000 000000000
Q ss_pred -EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHh----ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccc
Q 043441 64 -VLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGL----AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFD 138 (173)
Q Consensus 64 -~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (173)
....+..++++||||... ....+..++...... ....++.+++++++... ...++..+.... . ..
T Consensus 181 ~a~~~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~-----~~~l~~a~~~~~-~-~~ 250 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG-----QNGLVQAKIFKE-A-VN 250 (306)
T ss_dssp HHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH-----HHHHHHHHHHHH-H-SC
T ss_pred HHHhcCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHHHHHHHh-c-CC
Confidence 011334689999999642 333344444333222 22357888999998611 223333332211 1 14
Q ss_pred eEEEEEeCCCCCCC
Q 043441 139 YMIVVFTGGDELED 152 (173)
Q Consensus 139 ~~~iv~tk~D~~~~ 152 (173)
...+|+||.|.-..
T Consensus 251 i~gvVlTk~D~~~~ 264 (306)
T 1vma_A 251 VTGIILTKLDGTAK 264 (306)
T ss_dssp CCEEEEECGGGCSC
T ss_pred CCEEEEeCCCCccc
Confidence 46788999997543
No 246
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.44 E-value=8.5e-07 Score=62.56 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++|+|++|||||||++.|+|...+..|
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 46678999999999999999999997654444
No 247
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=1.9e-07 Score=69.20 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=37.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCccccCCCC----c--cceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
....++++|++|+|||||+|.|.|......+.... + .|.... ... ......++|+||+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCcc
Confidence 35689999999999999999999977655553332 1 121111 111 1234689999998654
No 248
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.41 E-value=2e-06 Score=63.61 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=64.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC------CCCccccCCCC-ccc----------eeeEEEEE--------------E-ee
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG------RRAFKSRASSS-GVT----------STCEMQRT--------------V-LK 66 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~------~~~~~~~~~~~-~~t----------~~~~~~~~--------------~-~~ 66 (173)
+..++++|++|+||||++..|.+ ........... +.. ........ . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998863 22211111000 000 00000000 0 00
Q ss_pred -CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEe
Q 043441 67 -DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFT 145 (173)
Q Consensus 67 -~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~t 145 (173)
.+..++++||||.... ...+.+..++....... .+|.+++|+++... ... ++.++.. ... .....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~~--~~d~vllVvda~~g--~~~---~~~~~~~-~~~-~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAI--KPDEVTLVIDASIG--QKA---YDLASKF-NQA-SKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGH---HHHHHHH-HHT-CTTEEEEEE
T ss_pred hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHHh--cCCEEEEEeeCCch--HHH---HHHHHHH-Hhh-CCCCEEEEe
Confidence 3447899999998751 12223333343322222 56888999998622 222 2223222 211 133789999
Q ss_pred CCCCCC
Q 043441 146 GGDELE 151 (173)
Q Consensus 146 k~D~~~ 151 (173)
|+|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999764
No 249
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.41 E-value=4e-07 Score=65.64 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++|+|++|||||||++.|+|......|
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 46778999999999999999999997654443
No 250
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.40 E-value=6.3e-07 Score=67.66 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|.|.....+|
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence 356788999999999999999999997754444
No 251
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.38 E-value=2e-07 Score=67.33 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=25.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFK 46 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~ 46 (173)
.++..++|+|++|||||||++.|.|.....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 466789999999999999999999976543
No 252
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.37 E-value=6.8e-07 Score=65.31 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|+|...+..|
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 357788999999999999999999997654444
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.36 E-value=3.5e-07 Score=67.63 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=65.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC-------CCCccce-----------eeEEEE----------E-EeeC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA-------SSSGVTS-----------TCEMQR----------T-VLKD 67 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-------~~~~~t~-----------~~~~~~----------~-~~~~ 67 (173)
.++..++++|++|+||||++..|.+......+. ....... ...... . .. .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 356799999999999999999986432211110 0000000 000000 0 01 3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCC
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGG 147 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~ 147 (173)
+..++++||||.... ......++...+. ...++.++++++++.. . ..+..+.+.+.. ....-+|+||.
T Consensus 182 ~~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~---~~~~~~~~~~~~--l~~~giVltk~ 249 (296)
T 2px0_A 182 EYDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--Y---EDMKHIVKRFSS--VPVNQYIFTKI 249 (296)
T ss_dssp GSSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--H---HHHHHHTTTTSS--SCCCEEEEECT
T ss_pred CCCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--H---HHHHHHHHHHhc--CCCCEEEEeCC
Confidence 457899999998753 2223333433322 1236777888887622 1 223333333332 13456788999
Q ss_pred CCCCC
Q 043441 148 DELED 152 (173)
Q Consensus 148 D~~~~ 152 (173)
|.-..
T Consensus 250 D~~~~ 254 (296)
T 2px0_A 250 DETTS 254 (296)
T ss_dssp TTCSC
T ss_pred Ccccc
Confidence 97754
No 254
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.35 E-value=2.1e-06 Score=69.12 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++++|++||||||+++.|+|...+..|
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 57789999999999999999999997655444
No 255
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.34 E-value=4.1e-07 Score=73.22 Aligned_cols=32 Identities=38% Similarity=0.335 Sum_probs=27.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++++|++||||||+++.|+|......|
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 56788999999999999999999997654444
No 256
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.33 E-value=7.7e-07 Score=62.82 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
...+|+++|.+|+|||||++.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999864
No 257
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.33 E-value=3.7e-07 Score=69.10 Aligned_cols=61 Identities=30% Similarity=0.453 Sum_probs=37.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCC-ccccCCCCc------cceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRA-FKSRASSSG------VTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~------~t~~~~~~~~~~~~~~~~~v~DtpG~~~~ 82 (173)
.+..++|+|++|+|||||+|.|+|... ...+..... .+..... ... .+ ...++||||+.+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i--~~v-~q-~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL--YHF-PH-GGDVIDSPGVREF 281 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE--EEC-TT-SCEEEECHHHHTC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE--EEE-CC-CCEecCcccHHHh
Confidence 356899999999999999999999775 444432211 1111111 122 22 2358999998664
No 258
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.33 E-value=1.1e-05 Score=62.72 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=65.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh-------CCCCccccCCCC-cc----------ceeeEEEE--------------E-
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL-------GRRAFKSRASSS-GV----------TSTCEMQR--------------T- 63 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~-------~~~~~~~~~~~~-~~----------t~~~~~~~--------------~- 63 (173)
.++..|+++|.+|+||||+...|. |..+..-...+. +. ........ +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999998886 443321110000 00 00000000 0
Q ss_pred Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEE
Q 043441 64 VLK-DGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIV 142 (173)
Q Consensus 64 ~~~-~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 142 (173)
... .+..++++||||.... ...+..++..... ...++.+++|+++... ......++.+ .... ....+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g--~~~~~~~~~f----~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTG--QDAANTAKAF----NEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBC--TTHHHHHHHH----HHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchh--HHHHHHHHHH----hccC-CCeEE
Confidence 000 3457899999997642 1233434433322 2357888999998733 2222222222 2221 22568
Q ss_pred EEeCCCCCC
Q 043441 143 VFTGGDELE 151 (173)
Q Consensus 143 v~tk~D~~~ 151 (173)
|+||+|.-.
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999754
No 259
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.31 E-value=1.3e-06 Score=63.47 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
-+++..++|+|++|||||||++.|+|...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35778999999999999999999999754
No 260
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.29 E-value=8.5e-07 Score=71.50 Aligned_cols=32 Identities=28% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++++|++||||||+++.|+|.....+|
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 56788999999999999999999997654444
No 261
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.25 E-value=2.3e-06 Score=63.94 Aligned_cols=127 Identities=19% Similarity=0.202 Sum_probs=67.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCCCcc--------------ceeeEEE-EE-----------
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR------ASSSGV--------------TSTCEMQ-RT----------- 63 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~------~~~~~~--------------t~~~~~~-~~----------- 63 (173)
..++..++++|++|+||||++..|.+......+ ...... ....... ..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~ 181 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF 181 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence 456788999999999999999887542211000 000000 0001111 00
Q ss_pred -----EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH---HHHh-ccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcc
Q 043441 64 -----VLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVK---CIGL-AKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGK 134 (173)
Q Consensus 64 -----~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~ 134 (173)
....+..++++||||.... .+.+..++.. .+.. ....+|.+++++++... ...++.++. |..
T Consensus 182 ~~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~ 252 (320)
T 1zu4_A 182 DAIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSK 252 (320)
T ss_dssp HHHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTT
T ss_pred HHHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhh
Confidence 0013346899999997742 1223333332 2221 12347888999998722 233444444 222
Q ss_pred cccceEEEEEeCCCCCCC
Q 043441 135 KVFDYMIVVFTGGDELED 152 (173)
Q Consensus 135 ~~~~~~~iv~tk~D~~~~ 152 (173)
. ....-+|+||.|.-..
T Consensus 253 ~-~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 253 V-ADVSGIILTKMDSTSK 269 (320)
T ss_dssp T-SCCCEEEEECGGGCSC
T ss_pred c-CCCcEEEEeCCCCCCc
Confidence 2 1345689999997543
No 262
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.25 E-value=1e-06 Score=71.21 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++++|++||||||+++.|+|...+..|
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 357789999999999999999999997654444
No 263
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.20 E-value=1.8e-06 Score=75.41 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.++++||++||||||+++.|++...+..|
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence 57789999999999999999999997654444
No 264
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.16 E-value=2.2e-06 Score=69.01 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++++|++||||||+++.|+|...+..|
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 56788999999999999999999997654444
No 265
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.16 E-value=5.2e-06 Score=64.25 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=65.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCCC-ccc----------eeeEEEEE--------------E-e
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSR------ASSS-GVT----------STCEMQRT--------------V-L 65 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~------~~~~-~~t----------~~~~~~~~--------------~-~ 65 (173)
++..++++|++|+||||++..|.+....... .... +.. ........ . .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999888642211000 0000 000 00000000 0 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 66 -KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 66 -~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
..+..++++||||.... ......++....... .++.+++|+++... ......++.+.+ . .....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~----~-l~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDE----K-VGVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHH----H-TCCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHh----c-CCceEEEE
Confidence 03346899999997653 233444444433322 56888999998622 222222222222 1 13477899
Q ss_pred eCCCCCC
Q 043441 145 TGGDELE 151 (173)
Q Consensus 145 tk~D~~~ 151 (173)
||.|.-.
T Consensus 245 TKlD~~~ 251 (425)
T 2ffh_A 245 TKLDGDA 251 (425)
T ss_dssp ESGGGCS
T ss_pred eCcCCcc
Confidence 9998753
No 266
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.15 E-value=6.9e-06 Score=62.37 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=52.9
Q ss_pred ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC--------CHHHHHHHH
Q 043441 55 TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF--------PQEEEAALH 126 (173)
Q Consensus 55 t~~~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~--------~~~~~~~~~ 126 (173)
|.......... ++..+.+|||+|.. ..+..+..++++++++|||++.++.- ...-.....
T Consensus 188 T~Gi~~~~~~~-~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~ 255 (362)
T 1zcb_A 188 TKGIHEYDFEI-KNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255 (362)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH
T ss_pred ccceEEEEeee-CCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH
Confidence 33344444555 67899999999964 34445557899999999999998411 122234444
Q ss_pred HHHHHHccc--ccceEEEEEeCCCCC
Q 043441 127 SWQTLFGKK--VFDYMIVVFTGGDEL 150 (173)
Q Consensus 127 ~l~~~~~~~--~~~~~~iv~tk~D~~ 150 (173)
++.+..... ...|+++++||+|+.
T Consensus 256 ~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 256 IFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHhcchhhCCCCEEEEEEChhhh
Confidence 555554332 236999999999986
No 267
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.12 E-value=1.5e-06 Score=75.97 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=27.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..+++||++||||||+++.|+|......|
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 56789999999999999999999997654444
No 268
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.10 E-value=3.3e-06 Score=68.20 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++++|++||||||+++.|+|...+..|
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 46778999999999999999999997654444
No 269
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.07 E-value=9.1e-05 Score=59.93 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
.++..++|+|++|||||||++.|.|......|.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 412 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 356789999999999999999999976555553
No 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.07 E-value=3.4e-06 Score=60.60 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=27.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|.|......|
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357789999999999999999999997654444
No 271
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.06 E-value=1.4e-06 Score=60.56 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
++..++|+|++||||||+++.|++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999874
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.06 E-value=3e-06 Score=61.53 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|...+..|
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 357788999999999999999999997654444
No 273
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.06 E-value=4e-06 Score=73.15 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++.+++++|++||||||+++.|+|......|
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 46788999999999999999999997654443
No 274
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.05 E-value=0.00011 Score=58.74 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|+|......|
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35678999999999999999999997765544
No 275
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.04 E-value=2.8e-06 Score=60.82 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|+|...+..|
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 356789999999999999999999997654333
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.04 E-value=2.8e-06 Score=61.54 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-+++..++|+|++|||||||++.|.|...+..|
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 356788999999999999999999997654444
No 277
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.04 E-value=0.00011 Score=57.22 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC-------C----------CCccccCCCCccceeeEE----EEEEeeCC--ceEE
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG-------R----------RAFKSRASSSGVTSTCEM----QRTVLKDG--QVVN 72 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~-------~----------~~~~~~~~~~~~t~~~~~----~~~~~~~~--~~~~ 72 (173)
..+...|.|+|+.++|||+|+|.|++ . ..|.-+......|...-. .....+.+ ..++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45678888999999999999997752 1 223322222233333221 11111122 4699
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHH---Hcc----cccceEEEEEe
Q 043441 73 VIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTL---FGK----KVFDYMIVVFT 145 (173)
Q Consensus 73 v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~~iv~t 145 (173)
++||.|+.+.....+. ...+...+ ..+ ...+| ++....+...+.+.++.+-+. ... ..+..++.++-
T Consensus 144 llDTEG~~d~~~~~~~-d~~ifaLa-~LL--SS~~I--yN~~~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvR 217 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRD-SATVFALS-TMI--SSIQV--YNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVR 217 (457)
T ss_dssp EEEECCBTCTTCCHHH-HHHHHHHH-HHH--CSEEE--EEEESSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEE
T ss_pred EEeccCCCCcccCccc-cHHHHHHH-HHH--hhhee--ecccccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEe
Confidence 9999999986554221 11121111 111 13344 444436666665555554442 222 12345666666
Q ss_pred CCCCC-C--CCcccHHHHhcc
Q 043441 146 GGDEL-E--DNEETLEDYLGR 163 (173)
Q Consensus 146 k~D~~-~--~~~~~~~~~~~~ 163 (173)
-+-.- + ...++.++|+++
T Consensus 218 Df~l~l~~~~g~~t~~eyLe~ 238 (457)
T 4ido_A 218 DWSFPYEFSYGADGGAKFLEK 238 (457)
T ss_dssp TCCCTTTSCSBHHHHHHHHHH
T ss_pred cCCccccccCCCCCHHHHHHH
Confidence 55432 1 111344556654
No 278
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.03 E-value=3.1e-06 Score=60.24 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++|+|++|||||||++.|+|...+..|
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 46778999999999999999999997654333
No 279
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.03 E-value=2.4e-06 Score=59.71 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=23.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
-.++..++|+|++||||||+++.|.|..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567889999999999999999998754
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.02 E-value=2.8e-06 Score=58.13 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.+..++|+|++||||||+++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999874
No 281
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.00 E-value=4.6e-06 Score=60.69 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
-.++..++|+|++|||||||++.|.|...+..|
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 457789999999999999999999997654444
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.00 E-value=3.7e-06 Score=61.63 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|+|...+..|
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 46778999999999999999999997655444
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.99 E-value=6.4e-06 Score=55.29 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++..++|+|++|||||||++.|.|.. ...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 566789999999999999999999866 4344
No 284
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.99 E-value=0.00016 Score=57.70 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
.++.+++|+|++|||||||++.|+|......|.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 356789999999999999999999977555553
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.98 E-value=3.4e-06 Score=59.66 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
+++..++|+|++|||||||++.|++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4667899999999999999999988553
No 286
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00017 Score=58.39 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
..++|+|++|||||||++.|.|......|
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 56899999999999999999997765555
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.97 E-value=3.9e-06 Score=58.24 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
++..++|+|++||||||+++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999874
No 288
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.96 E-value=3.6e-06 Score=57.58 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 043441 21 TVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~ 43 (173)
+++++|++|||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 289
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.95 E-value=1.8e-05 Score=60.77 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=55.0
Q ss_pred eEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCC--------CCHHHHHHHHHHH
Q 043441 58 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSR--------FPQEEEAALHSWQ 129 (173)
Q Consensus 58 ~~~~~~~~~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~--------~~~~~~~~~~~l~ 129 (173)
.....+.. ++..+.+|||+|... ++..+..++++++++|+|++.++. -...-.....++.
T Consensus 207 i~~~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~ 274 (402)
T 1azs_C 207 IFETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 274 (402)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHH
T ss_pred eEEEEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHH
Confidence 33444555 678899999999653 344455789999999999999840 0122234455555
Q ss_pred HHHccc--ccceEEEEEeCCCCCC
Q 043441 130 TLFGKK--VFDYMIVVFTGGDELE 151 (173)
Q Consensus 130 ~~~~~~--~~~~~~iv~tk~D~~~ 151 (173)
++.... ...|++|++||+|+..
T Consensus 275 ~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 275 SIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp HHHTCTTCSSCCEEEEEECHHHHH
T ss_pred HHHhcccCCCCeEEEEEEChhhhh
Confidence 554331 2368999999999753
No 290
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.95 E-value=3.2e-06 Score=59.65 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
-+++..++|+|++|||||||++.|+|..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567889999999999999999998854
No 291
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.93 E-value=2.8e-06 Score=60.34 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=18.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh-CCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSIL-GRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~-~~~ 43 (173)
-.++..++|+|++||||||+++.|. +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3567889999999999999999999 653
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.93 E-value=7.1e-06 Score=56.31 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.++..++|+|++||||||+++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999886
No 293
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.92 E-value=3.9e-06 Score=57.66 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
..++|+|++||||||+++.|++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.92 E-value=6.9e-06 Score=59.80 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
-.++..++|+|++|||||||++.|+|.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356788999999999999999999996
No 295
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.91 E-value=3e-05 Score=57.27 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=65.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCcccc------CCCC-ccc----------eeeEEEEE--------------E-e
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAFKSR------ASSS-GVT----------STCEMQRT--------------V-L 65 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~------~~~~-~~t----------~~~~~~~~--------------~-~ 65 (173)
++..++++|++|+||||++..|.+......+ .... ... ........ . .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999888653211110 0000 000 00000000 0 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEE
Q 043441 66 -KDGQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVF 144 (173)
Q Consensus 66 -~~~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~ 144 (173)
..+..++++||||.... ......++....... .++.+++++++. .. . ..++.++.. ... ....-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~-~~-~---~~~~~~~~~-~~~-~~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-TG-Q---EALSVARAF-DEK-VGVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-GT-H---HHHHHHHHH-HHH-TCCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCC-Cc-H---HHHHHHHHH-hhc-CCCCEEEE
Confidence 02347899999987643 233444444444333 467778889886 21 2 223333322 211 13466899
Q ss_pred eCCCCCCC
Q 043441 145 TGGDELED 152 (173)
Q Consensus 145 tk~D~~~~ 152 (173)
||.|.-..
T Consensus 245 nk~d~~~~ 252 (295)
T 1ls1_A 245 TKLDGDAR 252 (295)
T ss_dssp ECGGGCSS
T ss_pred ECCCCCcc
Confidence 99997643
No 296
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.90 E-value=7.2e-06 Score=60.44 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+++..++|+|++|||||||++.|+|......|
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 46778999999999999999999997654333
No 297
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.89 E-value=6e-06 Score=57.72 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..++..++|+|++|||||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467789999999999999999998764
No 298
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.89 E-value=6.8e-06 Score=59.27 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.++..++|+|++|||||||++.|+|.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999996
No 299
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.88 E-value=7.2e-06 Score=59.15 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHh---CCCCcc
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSIL---GRRAFK 46 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~---~~~~~~ 46 (173)
..+...+..|+|+|++||||||+.+.|. |...+.
T Consensus 21 ~~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 21 PHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp --CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3344567899999999999999999998 755443
No 300
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.87 E-value=7.9e-06 Score=56.77 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=24.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
...+..++|+|++|||||||++.|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3467889999999999999999998643
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.87 E-value=8e-06 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
+++..++++|++|||||||++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 356789999999999999999543
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=8.4e-06 Score=57.02 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=24.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.+++..++|+|++||||||+++.|.+..
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3467789999999999999999998754
No 303
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.86 E-value=1.1e-05 Score=58.65 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
+..++|+|++|||||||++.|+|.. +..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 6789999999999999999999976 5444
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.83 E-value=9e-06 Score=59.02 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
..++..++++|++||||||+++.|++..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4567899999999999999999998854
No 305
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.82 E-value=2e-05 Score=68.78 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=27.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
.++.+++++|++||||||+++.|+|...+..|
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 56789999999999999999999997654444
No 306
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.81 E-value=1.2e-05 Score=57.70 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=24.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHh---CCCCc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSIL---GRRAF 45 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~---~~~~~ 45 (173)
....+..++|+|++||||||+++.|. |...+
T Consensus 23 ~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 23 MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp ---CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 34456799999999999999999999 86544
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.79 E-value=6.8e-06 Score=57.64 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCccccCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSRAS 50 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~ 50 (173)
.++..++|+|++|||||||++.|+|. .+..+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 34678999999999999999999997 5545543
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.78 E-value=1e-05 Score=56.41 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.++..++|+|++||||||+++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999999874
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.78 E-value=1.1e-05 Score=59.69 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
-+++..++|+|++|+|||||++.|+|.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 457789999999999999999999864
No 310
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.74 E-value=2.7e-05 Score=62.09 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
...++..++|+|++|||||||++.|.|...+..+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 3457789999999999999999999997655444
No 311
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.74 E-value=1.7e-05 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
++..++|+|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999998754
No 312
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.73 E-value=4.3e-05 Score=57.82 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=47.9
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecC-------CC-CCHHHHHHHHHHHHHHccc--cc
Q 043441 68 GQVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVR-------SR-FPQEEEAALHSWQTLFGKK--VF 137 (173)
Q Consensus 68 ~~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~-------~~-~~~~~~~~~~~l~~~~~~~--~~ 137 (173)
...+.+|||+|... ++..+..++++++++|+|++.+ +. -...-..+.+++.+..... ..
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 35799999999764 3334457899999999999986 11 1122234445555544322 23
Q ss_pred ceEEEEEeCCCCCC
Q 043441 138 DYMIVVFTGGDELE 151 (173)
Q Consensus 138 ~~~~iv~tk~D~~~ 151 (173)
.|+++++||+|+..
T Consensus 251 ~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 251 TSFMLFLNKFDIFE 264 (354)
T ss_dssp CEEEEEEECHHHHH
T ss_pred CeEEEEEECcchhh
Confidence 69999999999753
No 313
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.71 E-value=2.3e-05 Score=59.45 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCc
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAF 45 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~ 45 (173)
++..++|+|++||||||+++.|++....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5678999999999999999999997643
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.69 E-value=2.2e-05 Score=58.48 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=24.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
...+..++|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 467789999999999999999999773
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.68 E-value=2.1e-05 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.++..++|+|++||||||+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999864
No 316
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.67 E-value=3.4e-05 Score=61.54 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=29.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
.-.++..++|+|++|||||||++.|.|...+..+.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 34788899999999999999999999976554443
No 317
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.67 E-value=4.1e-05 Score=61.90 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=29.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
...++..++|+|++|||||||++.|.|...+..|.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 35678899999999999999999999977655553
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.65 E-value=2e-05 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
.+++++|++|+||||+++.|++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999988653
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.63 E-value=2.4e-05 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++|+|++||||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999975
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.63 E-value=2.1e-05 Score=58.94 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCCc
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRAF 45 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~ 45 (173)
++..++++|++||||||+++.|++....
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4568999999999999999999986543
No 321
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.63 E-value=3.4e-05 Score=59.08 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
.++..++|+|++|||||||++.|.|...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 5678899999999999999999999754
No 322
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.61 E-value=4.1e-05 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+..++|+|++||||||+.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 323
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.61 E-value=3.1e-05 Score=55.47 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.-.++..++|+|++||||||+++.|.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999876
No 324
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.61 E-value=3.2e-05 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHh
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
.-+++..++|+|++|||||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34677899999999999999999887
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.61 E-value=3.2e-05 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.++..++|+|++||||||+.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998764
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.60 E-value=2.5e-05 Score=54.96 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
-+++..++|+|++|||||||++.|++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999999999873
No 327
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=3.6e-05 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
++..++|+|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999753
No 328
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.59 E-value=5.2e-05 Score=61.32 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCCccccC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRAFKSRA 49 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (173)
.-.++..++|+|++|||||||++.|.|...+..|.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 34788899999999999999999999976554443
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.59 E-value=3.4e-05 Score=58.47 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
+...++++|++||||||++++|++..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45589999999999999999998754
No 330
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.56 E-value=3.6e-05 Score=58.64 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.++..++++|++||||||+++.|++..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 466789999999999999999998854
No 331
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=3.7e-05 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..++|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 332
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.51 E-value=5.1e-05 Score=56.30 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
...+..++|+|++||||||+++.|.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356689999999999999999998763
No 333
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.49 E-value=5.4e-05 Score=60.02 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
.+..++++|++||||||++++|++...
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999998553
No 334
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.49 E-value=3.1e-05 Score=60.61 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
.++.+++|+|++|||||||++.|+|...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 4678999999999999999999988653
No 335
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.49 E-value=5.2e-05 Score=58.61 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.+...++|+|++||||||++++|++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 456689999999999999999998854
No 336
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.46 E-value=6.6e-05 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 043441 21 TVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~ 42 (173)
-|+|+||+||||||+++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.46 E-value=2.2e-05 Score=53.31 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
..++|+|++||||||+++.|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998753
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.45 E-value=6.7e-05 Score=53.20 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..++..++|.|++||||||+++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356789999999999999999999875
No 339
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.44 E-value=0.0021 Score=54.40 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSI 39 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l 39 (173)
..+..++|+|++|+||||+++.+
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999999998
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.42 E-value=0.00011 Score=51.08 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
...+..++|+|++||||||+.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999885
No 341
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.42 E-value=5e-05 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.+..++++|++|+||||+++.+.+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998743
No 342
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.00011 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+...|+|+|++||||||+.+.|.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4567999999999999999999864
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.39 E-value=5.4e-05 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
..+++|+|++|||||||++.|.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999999988544
No 344
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.38 E-value=8.8e-05 Score=50.49 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.+.++++|++|+||||+++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 345
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.38 E-value=6.5e-05 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
+.+.++|+|++||||||++|.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35789999999999999999999754
No 346
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.38 E-value=8.9e-05 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCCc
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRAF 45 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~ 45 (173)
..++|+|++|||||||++.|.|....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 78999999999999999999875443
No 347
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=7e-05 Score=49.60 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
+...++++|++|+||||+++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998744
No 348
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.38 E-value=0.0001 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...+..++|+|++||||||+++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999988854
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.37 E-value=9.9e-05 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++..++|+|++||||||+++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35568999999999999999999864
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.36 E-value=9.1e-05 Score=52.08 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+|+|+|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.35 E-value=0.00013 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.35 E-value=0.00015 Score=50.11 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...+..|+|.|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999998853
No 353
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00013 Score=48.81 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 043441 20 RTVVFVGRTGNGKSATGNSI 39 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l 39 (173)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.34 E-value=0.00014 Score=49.46 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
...+|+|++|+||||++.+|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999854
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.32 E-value=0.00015 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...|+|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 356
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.31 E-value=0.00015 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+..|++.|.+||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 357
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.30 E-value=0.00016 Score=53.26 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...++..|+|+|++||||||+.+.|.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999988754
No 358
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.30 E-value=0.00011 Score=55.44 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=25.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
-.++.+++|+|++|+|||||++.|+|...
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35678999999999999999999998653
No 359
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.29 E-value=0.00016 Score=48.42 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 360
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.28 E-value=0.00012 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 361
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00017 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 362
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.27 E-value=0.00023 Score=48.55 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.....|+|+|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998653
No 363
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.26 E-value=0.0002 Score=47.35 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 043441 19 VRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (173)
....+++|++|+||||++.+|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999874
No 364
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.00025 Score=48.38 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 14 SPSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.....+..++++|.+||||||+.+.|..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3445678999999999999999999864
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.25 E-value=0.00022 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...+..++++|++||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 366
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.23 E-value=0.00021 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 043441 19 VRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (173)
...|+++|++||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999985
No 367
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.23 E-value=0.00022 Score=48.75 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+..|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999853
No 368
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00021 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (173)
.+..|+++|++||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999986
No 369
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.23 E-value=0.0016 Score=55.05 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+..++|+|++|+||||+++.+.+
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 4567899999999999999998753
No 370
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.20 E-value=0.00016 Score=50.81 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.++..++++|++|+|||||++.+++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999874
No 371
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.20 E-value=0.00011 Score=62.16 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=26.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCCcccc
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRRAFKSR 48 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (173)
..+.+++|+|++|||||||++.|+|......|
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 46678999999999999999999997654333
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.19 E-value=0.00026 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+.++++|++||||||++..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 373
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.18 E-value=0.00026 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999854
No 374
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.16 E-value=0.00021 Score=52.51 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=24.3
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.-.++..++|+|++|+|||||++.|++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577899999999999999999987643
No 375
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.16 E-value=0.0047 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
+..++|+|++|+||||+++.+.+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 6789999999999999999987743
No 376
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.15 E-value=0.00016 Score=56.20 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=25.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
.-.++.+++|+|++|+|||||++.|.+...
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345778999999999999999999998653
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.0003 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
++..|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998853
No 378
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.14 E-value=0.00034 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+..|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.14 E-value=0.0003 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
++..++++|.+||||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 380
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.13 E-value=0.00041 Score=47.88 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+.....|+|.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999988863
No 381
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.12 E-value=0.00034 Score=48.15 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
......|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999998754
No 382
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.11 E-value=0.0003 Score=53.45 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 043441 21 TVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (173)
..+|+|++||||||++++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67799999999999999986
No 383
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=0.00032 Score=48.26 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999865
No 384
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.10 E-value=0.00022 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 043441 22 VVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~ 42 (173)
++|+|++|+||||++++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.10 E-value=0.00037 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
+..|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999764
No 386
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.08 E-value=0.00031 Score=48.93 Aligned_cols=26 Identities=12% Similarity=-0.121 Sum_probs=23.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
-+++..++++|++|+|||||+..+++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999986
No 387
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.08 E-value=0.00033 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.07 E-value=0.00032 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999853
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.07 E-value=0.0004 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (173)
....|+|.|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 390
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.05 E-value=0.00045 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (173)
....|++.|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999986
No 391
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.05 E-value=0.00041 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+..|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 392
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.04 E-value=0.0065 Score=43.32 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.....++|.|++|+|||++.+++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999875
No 393
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00043 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 043441 19 VRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (173)
+..|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998874
No 394
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.02 E-value=0.00036 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+++..++++|++|+||||+++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667899999999999999999986
No 395
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.02 E-value=0.00047 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+..|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 396
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.00 E-value=0.0003 Score=50.44 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 043441 22 VVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~ 42 (173)
++++|++|+||||+++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 397
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.00 E-value=0.00044 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 043441 21 TVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (173)
+|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 398
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00032 Score=49.66 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=23.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
-+++..++|+|++|+|||||+..+++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 356778999999999999999999873
No 399
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.00035 Score=50.21 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...+..++++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999999864
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.99 E-value=0.00045 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (173)
....|+|.|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999986
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.98 E-value=0.00052 Score=49.05 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.++.+|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999853
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.98 E-value=0.00034 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+..|+|+|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999854
No 403
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.98 E-value=0.0005 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
......|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998844
No 404
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.97 E-value=0.0005 Score=47.46 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..-..|+|.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 405
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.0026 Score=47.61 Aligned_cols=20 Identities=25% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 043441 22 VVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~ 41 (173)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999877
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.96 E-value=0.00058 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 407
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0084 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++.-++|.||+|+|||++.+++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35668899999999999999999976
No 408
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00046 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 409
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.95 E-value=0.00053 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 410
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.95 E-value=0.00038 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.++.+++|+|++|||||||++.|.+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999853
No 411
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.00051 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++|+|++||||||+.+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999864
No 412
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00036 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=16.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (173)
.+..|+|.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999985
No 413
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.009 Score=46.26 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+++-+++.||+|+|||++.+++.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999999975
No 414
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.94 E-value=0.0062 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
+..++|+|++|+||||+++.+ |..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 678999999999999999998 643
No 415
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.93 E-value=0.00061 Score=47.36 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHH
Q 043441 19 VRTVVFVGRTGNGKSATGNSI 39 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l 39 (173)
....+|+|++|+||||++.+|
T Consensus 23 ~~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHH
Confidence 468899999999999999987
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.93 E-value=0.00063 Score=47.38 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+..++++|.+||||||+.+.|.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 417
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.93 E-value=0.0004 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..++++|++|+||||+++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999874
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.92 E-value=0.00071 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
..|+|+|++|+|||||...|...-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998654
No 419
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.89 E-value=0.00081 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
+.....|+|.|.+||||||+.+.|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999986
No 420
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.89 E-value=0.00042 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 043441 22 VVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~ 42 (173)
++|+|++|+||||++++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999874
No 421
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00064 Score=46.59 Aligned_cols=23 Identities=17% Similarity=0.525 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 422
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.88 E-value=0.00023 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 423
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.88 E-value=0.00085 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
No 424
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.87 E-value=0.00034 Score=57.24 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
+++..++|+|++|||||||++.++
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 466789999999999999998754
No 425
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.87 E-value=0.001 Score=46.86 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=20.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...+.|+|+|++||||+|....|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556788999999999999988864
No 426
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.86 E-value=0.00069 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 427
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.86 E-value=0.00073 Score=45.07 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 428
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.86 E-value=0.0018 Score=47.81 Aligned_cols=66 Identities=9% Similarity=-0.059 Sum_probs=43.1
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCC-CHH-HHHHHHHHHHHHcccccceEEEEEeC
Q 043441 69 QVVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRF-PQE-EEAALHSWQTLFGKKVFDYMIVVFTG 146 (173)
Q Consensus 69 ~~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~iv~tk 146 (173)
..+.+||| ..... .....+++++|++++|+|+++.. +.. ...++..+.. ...|+++|+||
T Consensus 63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECC
T ss_pred CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeH
Confidence 47899999 22211 11125788999999999998554 222 2344443332 13789999999
Q ss_pred CCCCCC
Q 043441 147 GDELED 152 (173)
Q Consensus 147 ~D~~~~ 152 (173)
+|+...
T Consensus 125 ~DL~~~ 130 (301)
T 1u0l_A 125 MDLYDE 130 (301)
T ss_dssp GGGCCH
T ss_pred HHcCCc
Confidence 998754
No 429
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.85 E-value=0.00081 Score=47.59 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
......|+|+|.+||||||+.+.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999999853
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.85 E-value=0.00072 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
..+..+++.|++||||||+.+.|.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999986
No 431
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.83 E-value=0.001 Score=47.16 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
...+..|++.|++||||||+++.|...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998653
No 432
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.83 E-value=0.00062 Score=46.19 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (173)
.+|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998884
No 433
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.82 E-value=0.00019 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
.++ .++|+|++|||||||+++|.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHH
Confidence 455 99999999999999998873
No 434
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.82 E-value=0.00052 Score=49.96 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.-+++..++|+|++|+|||||+..+++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345778999999999999999988875
No 435
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.81 E-value=0.00084 Score=45.73 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 436
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.016 Score=44.78 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..++.-++|.||+|+|||++.+++.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 356688999999999999999999763
No 437
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.80 E-value=0.0008 Score=46.93 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.80 E-value=0.00097 Score=47.28 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
...++.+|+|+|++||||||+.+.|.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667999999999999999998864
No 439
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.79 E-value=0.00071 Score=45.32 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 440
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.78 E-value=0.00086 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 043441 19 VRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (173)
....+++|++|+||||++.+|+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4577899999999999999873
No 441
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.78 E-value=0.00074 Score=56.31 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.++..++|+|++|+||||+++.+.+.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 56679999999999999999998774
No 442
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.00091 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 443
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.76 E-value=0.0011 Score=44.58 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
....++|.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998753
No 444
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.016 Score=44.50 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++.-+++.||+|+|||++.+++.+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 34567899999999999999999976
No 445
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.73 E-value=0.00038 Score=55.65 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.++..++|+|++||||||+++.|.+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 466789999999999999999997643
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.73 E-value=0.001 Score=46.79 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 043441 21 TVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (173)
.|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.72 E-value=0.00097 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 043441 19 VRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (173)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999984
No 448
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.72 E-value=0.0012 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++|.|++|+||||++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 449
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.71 E-value=0.00094 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
...+++.|++|+||||+.+++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999763
No 450
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.70 E-value=0.00087 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+..++|+|++|+||||++++|.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999865
No 451
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.69 E-value=0.00086 Score=49.93 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 043441 20 RTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (173)
...+|+|++|+||||++.+|.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 389999999999999999986
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.67 E-value=0.0025 Score=49.22 Aligned_cols=26 Identities=38% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
......|+++|.+||||||+.+.|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999999875
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.67 E-value=0.0012 Score=46.02 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
+|+++|++||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 454
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.012 Score=45.90 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++.-++|.|++|+|||++.+++.+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 35678899999999999999999976
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.64 E-value=0.0015 Score=45.33 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
.+..++++|++|+||||+...|...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999997643
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.64 E-value=0.00079 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHH
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSI 39 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l 39 (173)
-+++..++|+|++|||||||++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 356788999999999999999994
No 457
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.63 E-value=0.0013 Score=49.84 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
..+++|++|+||||++.+|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 899999999999999999864
No 458
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.60 E-value=0.00014 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGRRA 44 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~ 44 (173)
..++|+|++||||||++++|.+...
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 3567899999999999999987543
No 459
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.60 E-value=0.00077 Score=49.54 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
....|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998754
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.60 E-value=0.0014 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 043441 18 GVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (173)
.-..|+|.|.+||||||+.+.|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999984
No 461
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.60 E-value=0.00089 Score=50.52 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
-+++..+.|+|++|+|||||++.+++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999998754
No 462
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.033 Score=41.35 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.+...++|.|++|+|||++.+++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 45578999999999999999999763
No 463
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.57 E-value=0.0018 Score=45.49 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
....++|.|++|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 464
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.56 E-value=0.0022 Score=44.96 Aligned_cols=86 Identities=5% Similarity=-0.084 Sum_probs=41.1
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHccc---ccceEEEEEeC
Q 043441 70 VVNVIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKK---VFDYMIVVFTG 146 (173)
Q Consensus 70 ~~~v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~iv~tk 146 (173)
++.+..+||-.+. .. ...++..++.++.+.|++|||+|.++.-..+.+..++.+...+..+ ...|++|+.||
T Consensus 97 k~~~~~~~~~~~~-GG----Q~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK 171 (227)
T 3l82_B 97 KMFSRHNEGDDQQ-GS----RYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI 171 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred hcccccCCCcccc-Cc----HHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence 4566666652111 11 2345666677888999999999998653333444444444444332 23589999998
Q ss_pred C-CCCCCCcccHHHHhc
Q 043441 147 G-DELEDNEETLEDYLG 162 (173)
Q Consensus 147 ~-D~~~~~~~~~~~~~~ 162 (173)
. |.... .+..+..+
T Consensus 172 qqDlp~A--ms~~EI~e 186 (227)
T 3l82_B 172 SQGDVKR--MPCFYLAH 186 (227)
T ss_dssp SSTTSCB--CCHHHHHH
T ss_pred CcCccCC--CCHHHHHH
Confidence 5 55433 34444443
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.54 E-value=0.0015 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 466
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.51 E-value=0.0019 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 043441 20 RTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..+++.|++|+|||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998753
No 467
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.50 E-value=0.0018 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSI 39 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l 39 (173)
....+++|+|.+||||||+++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 56789999999999999999876
No 468
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.50 E-value=0.002 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..++|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 469
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.46 E-value=0.0035 Score=45.86 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=37.2
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHHhccCCceEEEEEeecCCCCCHHHHHHHHHHHHHHcccccceEEEEEeCCCCCCC
Q 043441 73 VIDTPGLFDFSAGSEFVGMEIVKCIGLAKDGIHAVLVGFSVRSRFPQEEEAALHSWQTLFGKKVFDYMIVVFTGGDELED 152 (173)
Q Consensus 73 v~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~ 152 (173)
+-..||... +..+++ ......+|+++.|+|+.+..+...... .+.++ ..|.++|+||+|+.+.
T Consensus 3 i~w~PGhm~------ka~~~~----~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~---~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMA------KARREV----TEKLKLIDIVYELVDARIPMSSRNPMI----EDILK---NKPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTT------HHHHHH----HHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCS---SSCEEEEEECGGGSCH
T ss_pred CcCCchHHH------HHHHHH----HHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHC---CCCEEEEEECcccCCH
Confidence 345677653 223333 345566799999999986665543222 22223 2789999999999864
No 470
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.46 E-value=0.0016 Score=43.77 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
....++|.|++|+|||+++..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999988653
No 471
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0017 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=20.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
-.++..++++|++|+|||||...++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999999976654
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.44 E-value=0.0024 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+..++|+|++||||||+...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46789999999999999999864
No 473
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.43 E-value=0.0013 Score=53.75 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=18.4
Q ss_pred CCccEEEEEcCCCCCHHHHH
Q 043441 17 NGVRTVVFVGRTGNGKSATG 36 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStli 36 (173)
+++..++|+|++|||||||+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 57789999999999999996
No 474
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.42 E-value=0.0022 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.+.++|+|++|+||||+...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357899999999999999998753
No 475
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.42 E-value=0.066 Score=39.45 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+++.|++|+|||+++.++..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4466667799999999999864
No 476
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.38 E-value=0.0025 Score=46.89 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
.+...++|.|++|+|||++.+++.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45578999999999999999999763
No 477
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.37 E-value=0.0026 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+...+++.|++|+|||++.+++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 478
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.34 E-value=0.0025 Score=43.91 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 043441 21 TVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (173)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 479
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.33 E-value=0.0021 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
....++++|++|+||||+++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 480
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.33 E-value=0.0023 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 043441 19 VRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (173)
....+++|++|+|||+++.+|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3788999999999999998863
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.31 E-value=0.0025 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 043441 20 RTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (173)
..|+|+|++||||||+...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998864
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.28 E-value=0.0019 Score=46.58 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 15 PSNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
+..+...|+|.|..||||||+.+.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999998653
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.27 E-value=0.0026 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+.|+|+|++|+||||+...|..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 35789999999999999998864
No 484
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.26 E-value=0.0039 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
+...+++.|++|+|||++.+.+.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 485
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.25 E-value=0.0033 Score=45.59 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.....++|.|++|+|||++++++.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999965
No 486
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.25 E-value=0.025 Score=43.07 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+...++|.|++|+|||++..++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 487
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.24 E-value=0.0032 Score=44.82 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=21.6
Q ss_pred ccCCCCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 11 ELTSPSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.+......+..|++.|.+||||||+++.|..
T Consensus 19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444455678999999999999999999753
No 488
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.24 E-value=0.0033 Score=41.02 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
....+++.|++|+|||++..++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4466999999999999999998653
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.23 E-value=0.0037 Score=44.15 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 13 TSPSNGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+.....+..|++.|..||||||+++.|..
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44456678999999999999999998754
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.21 E-value=0.0041 Score=45.61 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+..+++.|++|+|||++.+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456788889999999999999875
No 491
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.20 E-value=0.0029 Score=44.83 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
..+..|++.|+.||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998854
No 492
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.20 E-value=0.004 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 043441 17 NGVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
.....++|.|++|+|||++.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999987754
No 493
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.18 E-value=0.0025 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
++..++++|++|+||||++++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999998763
No 494
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.11 E-value=0.013 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
....++|+|++|+|||+++..+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998763
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.10 E-value=0.0029 Score=50.31 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
-.++..++|+|++|+|||||++.+++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466789999999999999999998743
No 496
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.09 E-value=0.011 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILGRR 43 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (173)
...++|+|++|+|||+++..+.+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999987643
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.08 E-value=0.0041 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 043441 19 VRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (173)
+..|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 498
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.08 E-value=0.0034 Score=48.25 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSIL 40 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~ 40 (173)
-.++..+.|+|++|+|||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3567789999999999999999654
No 499
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.05 E-value=0.0035 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 043441 18 GVRTVVFVGRTGNGKSATGNSILG 41 (173)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (173)
....++++|.+|||||++++.|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 500
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.04 E-value=0.039 Score=46.07 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 043441 16 SNGVRTVVFVGRTGNGKSATGNSILGR 42 (173)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (173)
..++.-|+|.|++|+|||++.+++.+.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456688999999999999999999864
Done!