BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043442
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 8/176 (4%)
Query: 113 MWPQGNDSFCKIVHSYATLAAELDRTVSRMIFESYSLEKYH-DSYIESITYLLRVLK-NR 170
+WP+ + + YA L V + + LE + + + LL +K N
Sbjct: 156 IWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINY 215
Query: 171 APIGGEPNL--GFVTHTDKSFTTILHQNQINGLEIDTRDGQKINVELSPSSFVVVAGDAL 228
P +P L G HTD S T + N + GL++ +G+ + + P S V+ GD L
Sbjct: 216 YPKCPQPELALGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTL 274
Query: 229 MAWSNDRIHSPSHRVIMNGAVDRYSLALFSFSSG---IVKVPDELVDDEHPLKYKP 281
SN + S HR ++N R S A+F ++K E+V E P K+ P
Sbjct: 275 EILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPP 330
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 8/176 (4%)
Query: 113 MWPQGNDSFCKIVHSYATLAAELDRTVSRMIFESYSLEKYH-DSYIESITYLLRVLK-NR 170
+WP+ + + YA L V + + LE + + + LL +K N
Sbjct: 157 IWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINY 216
Query: 171 APIGGEPNL--GFVTHTDKSFTTILHQNQINGLEIDTRDGQKINVELSPSSFVVVAGDAL 228
P +P L G HTD S T + N + GL++ +G+ + + P S V+ GD L
Sbjct: 217 YPKCPQPELALGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTL 275
Query: 229 MAWSNDRIHSPSHRVIMNGAVDRYSLALFSFSSG---IVKVPDELVDDEHPLKYKP 281
SN + S HR ++N R S A+F ++K E+V E P K+ P
Sbjct: 276 EILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPP 331
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 113 MWPQGNDSFCKIVHSYAT----LAAELDRTVSRMI-FESYSLEKYHDSYIESITYLLRVL 167
+WP+ + + YA LA ++ + +S + E LEK E LL+
Sbjct: 157 IWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEE---LLLQXK 213
Query: 168 KNRAPIGGEPNL--GFVTHTDKSFTTILHQNQINGLEIDTRDGQKINVELSPSSFVVVAG 225
N P +P L G HTD S T + N + GL++ +G+ + + P S V G
Sbjct: 214 INYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQL-FYEGKWVTAKCVPDSIVXHIG 272
Query: 226 DALMAWSNDRIHSPSHRVIMNGAVDRYSLALFSFSSG---IVKVPDELVDDEHPLKYKP 281
D L SN + S HR ++N R S A+F ++K E V E P K+ P
Sbjct: 273 DTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPP 331
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 115 PQGNDSFCKIVHSYATLAAELDRTVSRMIFESYSLEKYHDSYIESITYLLR-----VLKN 169
P ++ + ++ +A +L + ++ E+ LEK Y+++ Y + +
Sbjct: 104 PDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEK---GYLKNAFYGSKGPNFGTKVS 160
Query: 170 RAPIGGEPNL--GFVTHTDKSFTTILHQN-QINGLEIDTRDGQKINVELSPSSFVVVAGD 226
P +P+L G HTD +L Q+ +++GL++ +DGQ I+V S VV GD
Sbjct: 161 NYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPXRHSIVVNLGD 219
Query: 227 ALMAWSNDRIHSPSHRVIMNGAVDRYSLALF 257
L +N + S HRVI R SLA F
Sbjct: 220 QLEVITNGKYKSVXHRVIAQKDGARXSLASF 250
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 110/282 (39%), Gaps = 31/282 (10%)
Query: 21 WIKACNDVRQALEEFGCFIIECNHNLISSEFRSEVFGALKNLFDLPTETKMKNKYERPLT 80
+ + ++ + E +G F + +++L + + V A K F LP ETK +Y
Sbjct: 19 FTRFAQELGASFERYG-FAVLSDYDLDQARIDAAVDSA-KAFFALPVETK--KQYAGVKG 74
Query: 81 GYVGQIPKLPLHESMGIDN---------ATSLEAAQSF----TKIMWPQGNDSFCKIVHS 127
G G IP + + G D+ L F +WP +F H
Sbjct: 75 GARGYIP-FGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFK---HD 130
Query: 128 YATLAAELDRT---VSRMIFESYSLEK-YHDSYIESITYLLRVLKNRAPIGGEPNLGFVT 183
+ L LD V I LE+ + ++ +LR+L +
Sbjct: 131 VSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGA 190
Query: 184 HTDKSFTTILHQNQINGLEIDTRDGQKINVELSPSSFVVVAGDALMAWSNDRIHSPSHRV 243
H D + T+L + GLE+ RDGQ + + P V+ GD L +N+ + S HRV
Sbjct: 191 HGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRV 250
Query: 244 I----MNGAVDRYSLALF-SFSSGI-VKVPDELVDDEHPLKY 279
+ V RYS F F+S +K V E+P +Y
Sbjct: 251 VNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 163 LLRVLKNRAPIGGEPNLGFV---THTDKSFTTILHQNQINGLEIDTRDGQKINVELSPSS 219
LLR+L + P G+ G + H D + T+L GL++ +DG ++V +
Sbjct: 151 LLRIL-HYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGN 209
Query: 220 FVVVAGDALMAWSNDRIHSPSHRVIMNGAVD----RYSLALF 257
++ GD L S+ S SHRVI D R SL LF
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 179 LGFVTHTDKSFTTILHQNQINGLEIDTRDGQKINVELSPSSFVVVAGDALMAWSNDRIHS 238
L F H D S T+L+Q+ + L+++T G + ++E + +++ G + +N+ +
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ-DIEADDTGYLINCGSYMAHLTNNYYKA 267
Query: 239 PSHRVIMNGAVDRYSLALF 257
P HRV A +R SL F
Sbjct: 268 PIHRVKWVNA-ERQSLPFF 285
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 179 LGFVTHTDKSFTTILHQNQINGLEIDTRDGQKINVELSPSSFVVVAGDALMAWSNDRIHS 238
L F H D S T+L+Q+ + L+++T G + ++E + +++ G + +N+ +
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ-DIEADDTGYLINCGSYMAHLTNNYYKA 267
Query: 239 PSHRVIMNGAVDRYSLALFSFSSGIVKVPDEL-------VDDEHPLKYKPFEHFGLL 288
P HRV A +R SL F + G V D D PL Y + GL+
Sbjct: 268 PIHRVKWVNA-ERQSLPFF-VNLGYDSVIDPFDPREPNGKSDREPLSYGDYLQNGLV 322
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 19 NSWIKACNDVRQALEEFGCFIIECNHNLISSEFRSEVFGALKNLFDLPTETKMKNKYERP 78
+SW ++Q +EE + L + +F +E D ++ KN ERP
Sbjct: 241 DSWGTPFQQLKQVVEE-------PSPQLPADKFSAE-------FVDFTSQCLKKNSKERP 286
Query: 79 LTGYVGQIPKLPLHESMGIDNAT 101
+ Q P LHES G D A+
Sbjct: 287 TYPELXQHPFFTLHESKGTDVAS 309
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 19 NSWIKACNDVRQALEEFGCFIIECNHNLISSEFRSEVFGALKNLFDLPTETKMKNKYERP 78
+SW ++Q +EE + L + +F +E D ++ KN ERP
Sbjct: 214 DSWGTPFQQLKQVVEE-------PSPQLPADKFSAE-------FVDFTSQCLKKNSKERP 259
Query: 79 LTGYVGQIPKLPLHESMGIDNAT 101
+ Q P LHES G D A+
Sbjct: 260 TYPELMQHPFFTLHESKGTDVAS 282
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 19 NSWIKACNDVRQALEEFGCFIIECNHNLISSEFRSEVFGALKNLFDLPTETKMKNKYERP 78
+SW ++Q +EE S + ++ F A D ++ KN ERP
Sbjct: 258 DSWGTPFQQLKQVVEE------------PSPQLPADKFSA--EFVDFTSQCLKKNSKERP 303
Query: 79 LTGYVGQIPKLPLHESMGIDNAT 101
+ Q P LHES G D A+
Sbjct: 304 TYPELMQHPFFTLHESKGTDVAS 326
>pdb|2OX1|A Chain A, Archaeal Dehydroquinase
pdb|2OX1|B Chain B, Archaeal Dehydroquinase
pdb|2OX1|C Chain C, Archaeal Dehydroquinase
pdb|2OX1|D Chain D, Archaeal Dehydroquinase
Length = 196
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 21 WIKACNDVRQALEEFGCFIIECNHNLIS----SEFRSEVFGALKNLFDLPTETKMKNKYE 76
++ +D+ + +F C IIE HN I SE + V G +L + T K K E
Sbjct: 75 YVDLESDLPDSAFDFNCRIIESYHNFIRTPDYSELKGIVEGRRGDLVKIATMGKSKRDVE 134
Query: 77 ---RPLTGY 82
R LT Y
Sbjct: 135 TIVRILTNY 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,449,957
Number of Sequences: 62578
Number of extensions: 386319
Number of successful extensions: 874
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 13
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)