Your job contains 1 sequence.
>043443
AKSSLLSSLVFLVQEGSAMRRYSPPYYSPPRRGYGGRGRSPPRRGYGGGGGGYGRRKEQN
HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ
HHMNGKRFAGREISVVLAAESRKRPEEMRQRHRFRGGSSYGGPRSSYYGRYRSRSLSRSR
SPHHPQGSRSRYRSRSYTPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSP
GYDDSADRRNPNGNGYGEKSGYEETQAHWRSPPPRGVSRSPSGSRSRSRSADLSPRHTR
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043443
(299 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099931 - symbol:SCL30 "SC35-like splicing fac... 415 7.8e-39 1
TAIR|locus:2086804 - symbol:SCL30A "SC35-like splicing fa... 323 5.6e-34 2
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 278 2.0e-28 2
UNIPROTKB|Q7ZTJ8 - symbol:srsf10 "MGC53149 protein" speci... 215 7.6e-22 2
ZFIN|ZDB-GENE-040426-1415 - symbol:zgc:65772 "zgc:65772" ... 219 9.7e-22 2
UNIPROTKB|F1Q237 - symbol:F1Q237 "Uncharacterized protein... 198 5.0e-19 2
GENEDB_PFALCIPARUM|PFE0160c - symbol:PFE0160c "Ser/Arg-ri... 222 2.2e-18 1
UNIPROTKB|Q8I468 - symbol:PFE0160c "Ser/Arg-rich splicing... 222 2.2e-18 1
UNIPROTKB|G3MWK4 - symbol:SRSF12 "Uncharacterized protein... 217 7.5e-18 1
UNIPROTKB|Q9BRL6 - symbol:SRSF8 "Serine/arginine-rich spl... 167 9.1e-18 2
UNIPROTKB|Q8WXF0 - symbol:SRSF12 "Serine/arginine-rich sp... 216 9.5e-18 1
UNIPROTKB|Q3ZBU5 - symbol:FUSIP1 "Uncharacterized protein... 214 1.6e-17 1
UNIPROTKB|O75494 - symbol:SRSF10 "Serine/arginine-rich sp... 214 1.6e-17 1
UNIPROTKB|Q5JRI1 - symbol:SRSF10 "Serine/arginine-rich-sp... 214 1.6e-17 1
UNIPROTKB|Q5JRI3 - symbol:SRSF10 "Serine/arginine-rich-sp... 214 1.6e-17 1
MGI|MGI:1333805 - symbol:Srsf10 "serine/arginine-rich spl... 214 1.6e-17 1
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 214 1.6e-17 1
UNIPROTKB|F2Z3T5 - symbol:Fusip1 "Protein Fusip1" species... 214 1.6e-17 1
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 172 1.8e-17 2
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 172 1.8e-17 2
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 172 1.8e-17 2
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 172 1.8e-17 2
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 172 1.8e-17 2
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 172 1.8e-17 2
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"... 172 3.7e-17 2
UNIPROTKB|F1P4F6 - symbol:Gga.8379 "Uncharacterized prote... 208 6.7e-17 1
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 174 9.8e-17 2
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 157 3.2e-16 2
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 157 3.2e-16 2
UNIPROTKB|F1S0E2 - symbol:SRSF12 "Uncharacterized protein... 199 6.0e-16 1
UNIPROTKB|J9NZF4 - symbol:SRSF12 "Uncharacterized protein... 199 8.7e-16 1
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl... 172 1.7e-15 2
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 141 1.4e-14 2
UNIPROTKB|I3LRW8 - symbol:SRSF2 "Serine/arginine-rich-spl... 136 1.0e-13 2
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin... 173 3.4e-13 1
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl... 172 4.4e-13 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 172 4.4e-13 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 172 4.4e-13 1
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote... 141 1.0e-12 2
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 123 1.1e-12 2
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 144 5.5e-12 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 125 8.6e-12 2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 130 1.5e-11 2
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 121 2.4e-11 2
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 6.3e-11 2
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 6.3e-11 2
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 125 6.3e-11 2
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 7.3e-11 2
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 125 7.3e-11 2
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 147 7.4e-11 2
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 123 1.0e-10 2
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 129 1.0e-10 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 149 1.3e-10 2
TAIR|locus:2050024 - symbol:AT2G21440 species:3702 "Arabi... 161 1.5e-10 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 130 1.6e-10 2
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 125 1.9e-10 2
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 121 2.1e-10 2
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein... 138 2.2e-10 2
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 125 4.4e-10 2
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif... 131 5.2e-10 2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 124 5.7e-10 2
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 124 5.7e-10 2
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 124 5.7e-10 2
UNIPROTKB|I3L6H1 - symbol:SRSF10 "Uncharacterized protein... 142 6.6e-10 1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 132 8.1e-10 2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 129 8.2e-10 2
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 130 1.6e-09 2
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 130 2.2e-09 2
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 130 2.2e-09 2
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 130 2.2e-09 2
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 130 2.2e-09 2
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 130 2.2e-09 2
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 130 2.2e-09 2
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein... 127 2.3e-09 2
UNIPROTKB|F1N0L5 - symbol:RBM19 "Uncharacterized protein"... 149 2.6e-09 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 136 2.9e-09 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 129 3.5e-09 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 126 3.7e-09 2
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 147 4.3e-09 1
UNIPROTKB|A6NDE4 - symbol:RBMY1B "RNA-binding motif prote... 124 4.3e-09 2
UNIPROTKB|A6NEQ0 - symbol:RBMY1E "RNA-binding motif prote... 124 4.3e-09 2
UNIPROTKB|P0C7P1 - symbol:RBMY1D "RNA-binding motif prote... 124 4.3e-09 2
UNIPROTKB|P0DJD3 - symbol:RBMY1A1 "RNA-binding motif prot... 124 4.3e-09 2
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 130 4.4e-09 2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 130 4.4e-09 2
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 130 4.5e-09 2
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 134 4.7e-09 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 134 4.7e-09 1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 130 4.7e-09 2
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 130 5.5e-09 2
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ... 133 5.9e-09 1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"... 133 5.9e-09 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 141 6.2e-09 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 141 6.2e-09 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 143 6.8e-09 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 141 7.2e-09 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 141 8.0e-09 1
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 142 8.5e-09 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 141 9.1e-09 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 141 9.2e-09 1
WARNING: Descriptions of 424 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 97/205 (47%), Positives = 114/205 (55%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+HGSLLVRNIPLDCRPEELR PFERFG VRDVY+P+DYY+G+PRGFAFV+FVD Y+A EA
Sbjct: 45 SHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEA 104
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRHRFXXXXXXXXXXXXXXXXXXXXXXXXX 179
Q MN + FAGREI+VV+A+ESRKRPEEMR + R
Sbjct: 105 QRSMNRRSFAGREITVVVASESRKRPEEMRVKTR-TRSREPSGSRDRSHGRSRSRSISRS 163
Query: 180 XXPHHPQGXXXXXXXXXXTPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYS 239
P P + YS +PRRR G PRG E + S
Sbjct: 164 RSPRRPSDSRSRY----------RSRSYSPAPRRRG----GPPRGEEDENYSRRSYSPGY 209
Query: 240 PGYDDSADRRNPNG-NGYGEKSGYE 263
G +A R+ NG N EK GYE
Sbjct: 210 EGAAAAAPDRDRNGDNEIREKPGYE 234
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 323 (118.8 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SLLVRN+ DCR E+LR PFE+FG V+D+YLP+DYYTG+PRGF F+QF+DP +AAEA+H
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
M+G GRE++VV A E+RK+P EMR R R
Sbjct: 98 MDGYLLLGRELTVVFAEENRKKPTEMRTRDR 128
Score = 62 (26.9 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 198 TPVPRQHEDYSISPRRRHIEHPGS-PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGY 256
+P ++H+ S+SP+ R E S R PP G+ RS SPG S R +P +
Sbjct: 166 SPPAKRHQSRSVSPQDRRYEKERSYSRSPPHN-GSRV--RSGSPGRVKSHSR-SPRRSVS 221
Query: 257 GEKS-GYEETQA 267
K+ Y QA
Sbjct: 222 PRKNRSYTPEQA 233
Score = 53 (23.7 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 212 RRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQAH 268
RRR P R PP RG RS S GY+ +R+ + + + YE+ +++
Sbjct: 138 RRR--SPPRYSRSPPPRRGRR--SRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSY 190
Score = 50 (22.7 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 207 YSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNG 253
Y+ P +RH SP+ E+ YSR SP ++ S R G
Sbjct: 164 YNSPPAKRHQSRSVSPQDRRYEKERSYSR---SPPHNGSRVRSGSPG 207
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 278 (102.9 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 51/86 (59%), Positives = 66/86 (76%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
LL+RN+PLD RP +LR FERFG ++D+YLP++YYTGEPRGF FV++ +AAEA M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 124 NGKRFAGREISVVLAAESRKRPEEMR 149
N K GREI++V A E+RK P+EMR
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMR 134
Score = 54 (24.1 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 203 QHEDYSI----SPRRRHIEHPGSPRGPPQERGAEYSRRS---YSPGYDDSADRRNP 251
+H DY SPRRR+ H S R PP+ R YSP + R+P
Sbjct: 142 RHGDYKRTSHRSPRRRYRSHSRS-RSPPRRESRHSKVREDDLYSPRRRSRSISRSP 196
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 215 (80.7 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 42/91 (46%), Positives = 58/91 (63%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
+ SL VRNI D R E+LR F R+G + DVY+P DYY PRGFA+VQF D +A +A
Sbjct: 9 NSSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDAL 68
Query: 121 HHMNGKRFAGREISVVLAAESRKRPEEMRQR 151
H+++ K GR+I + A RK P +M+ +
Sbjct: 69 HNLDKKWICGRQIEIQFAQGDRKTPHQMKAK 99
Score = 54 (24.1 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 212 RRRHIEHP-GSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS 260
R R IE G P RGAE RRS S +RRN + + G S
Sbjct: 130 RSRSIEQNYGRSNSPRGGRGAERLRRSRSRSDHGRFNRRNRSRSRSGSNS 179
Score = 43 (20.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 210 SPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS 260
+P + + S G + Y+RRS S Y+ R YG +
Sbjct: 92 TPHQMKAKEGSSTYGSSRYDDDRYNRRSRSRSYERRRSRSRSIEQNYGRSN 142
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 219 (82.2 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 41/93 (44%), Positives = 61/93 (65%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
+ SL VRNI + RPE+LR F R+G + DVY+P D+Y+ PRGFA++QF D +A +A
Sbjct: 9 NSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDAL 68
Query: 121 HHMNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
H+++ K GR+I + A RK P +M+ + R
Sbjct: 69 HNLDRKWVCGRQIEIQFAQGDRKTPGQMKNKER 101
Score = 49 (22.3 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 201 PRQHEDYSISPR-RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDS-ADRRNPNG 253
PR+ + S R R H H GS R + R + + RS SP + RR +G
Sbjct: 143 PRESRGRTHSRRSREHDRHRGSTRDHHRSR-TDAASRSRSPSRSRARGGRRESDG 196
Score = 48 (22.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 198 TPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYD 243
TP ++++ S SPR E R + R Y RR S SP YD
Sbjct: 92 TPGQMKNKERS-SPRSSRYEDSDRRR---RSRSRSYDRRRSRSPSYD 134
Score = 39 (18.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 202 RQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRS 237
R+ S RRR + SPR + RG +SRRS
Sbjct: 126 RRSRSPSYDRRRRRSD---SPR---ESRGRTHSRRS 155
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 198 (74.8 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 38/89 (42%), Positives = 57/89 (64%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ + R E+L F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A +K P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDQKTPNQMKAK 99
Score = 44 (20.5 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 203 QHEDYSISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDDSADR 248
+++DY R R R + R +Y+ RRSYSP A R
Sbjct: 109 RYDDYD---RYRRSRSQSYERRRSRSRSFDYNNRRSYSPRNSRPAGR 152
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 42/91 (46%), Positives = 55/91 (60%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SLL+R + D P +R F+RFG ++DVYLP DYYT EPRGF FV+F D +A +A
Sbjct: 13 SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQALKE 72
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
MNG G I V +A + R P MR + +
Sbjct: 73 MNGSEIDGSRIEVFVAQKGRSDPRHMRYKEK 103
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 42/91 (46%), Positives = 55/91 (60%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SLL+R + D P +R F+RFG ++DVYLP DYYT EPRGF FV+F D +A +A
Sbjct: 13 SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQALKE 72
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
MNG G I V +A + R P MR + +
Sbjct: 73 MNGSEIDGSRIEVFVAQKGRSDPRHMRYKEK 103
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ RPE+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A ++
Sbjct: 11 SLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
+N K GR+I + A RK P +M+ + R
Sbjct: 71 LNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 167 (63.8 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
+L V N+ P+ LR FE++G V DVY+P++ +T PRGFAFV+F D +A +A+
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQ 150
M+G GRE+ V +A R+ RQ
Sbjct: 75 MDGAELDGRELRVQVARYGRRDLPRSRQ 102
Score = 67 (28.6 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 23/67 (34%), Positives = 28/67 (41%)
Query: 202 RQHEDYSISPRRRHIEHPGSP-----RGPPQERGAEYSRRSYSPG-YDDSADRRNPNGNG 255
R + S SPRRRH P R + RG+ YSR YS Y S R+P
Sbjct: 119 RSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRS 178
Query: 256 YGEKSGY 262
+S Y
Sbjct: 179 RYRESRY 185
Score = 58 (25.5 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 211 PRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQAHW 269
PR R G PRG + RG Y RRS S G + RR G +++ +
Sbjct: 98 PRSRQ----GEPRG--RSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY 150
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL +RN+ RPE+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A ++
Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
+N K GR+I + A RK P +M+ + R
Sbjct: 71 LNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 172 (65.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 55 (24.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RRS SP + R+ + + +S Y +++
Sbjct: 101 SRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 149
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 172 (65.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 55 (24.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RRS SP + R+ + + +S Y +++
Sbjct: 101 SRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 149
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 172 (65.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 55 (24.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RRS SP + R+ + + +S Y +++
Sbjct: 101 SRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 149
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 172 (65.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 55 (24.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RRS SP + R+ + + +S Y +++
Sbjct: 101 SRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 149
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 172 (65.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 55 (24.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RRS SP + R+ + + +S Y +++
Sbjct: 101 SRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 149
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 172 (65.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 55 (24.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RRS SP + R+ + + +S Y +++
Sbjct: 101 SRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 149
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 172 (65.6 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 52 (23.4 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RR+ SP + R+ + + +S Y +++
Sbjct: 101 SRRGPPPRRYGGGGYGRRTRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 149
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 40/89 (44%), Positives = 57/89 (64%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+ Q VD +A +A H+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 174 (66.3 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 38/80 (47%), Positives = 49/80 (61%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ PE LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESR 142
M+G GRE+ V +A R
Sbjct: 75 MDGALLDGRELRVQMARYGR 94
Score = 46 (21.3 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 201 PRQHEDY-----SISPRRR-HIEHPGSPRGPPQERG-AEYSR---RSYSPGYDDSADR 248
PR++ Y S SPRRR H R + R + YSR RSYS S R
Sbjct: 107 PRRYGGYGRRSRSRSPRRRKHSRSRSRSRSRSRSRSRSRYSRSRSRSYSRSRSRSRSR 164
Score = 41 (19.5 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 221 SPRGPPQERGAEYSRRSYS 239
S RG P R Y RRS S
Sbjct: 101 SRRGAPPRRYGGYGRRSRS 119
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 157 (60.3 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL + N+ P +LR FER+G + DV++P+D Y+ + +GF FV+F + +A A
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 123 MNGKRFAGREISVVLAAESRKRPE 146
+GK GRE+ V LA R E
Sbjct: 80 TDGKLVDGRELRVTLAKYDRPSDE 103
Score = 58 (25.5 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 19/55 (34%), Positives = 22/55 (40%)
Query: 198 TPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPN 252
+P R D SP RR S PP+E G+ RRS S S R N
Sbjct: 143 SPPSRDRRD---SPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSN 194
Score = 45 (20.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRN 250
S SPRRR P R R +R S DS DRR+
Sbjct: 116 SRSPRRRS-RSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRD 157
Score = 39 (18.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 217 EHPGSPRGPPQERGAEYSRRSYSPGYDDSADRR 249
E G G + R RRS SP Y S R
Sbjct: 103 ERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPR 135
Score = 37 (18.1 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 242 YDDSADRRNPNGNGYGEK 259
YD +D R G G G +
Sbjct: 97 YDRPSDERGGRGGGGGRR 114
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 157 (60.3 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL + N+ P +LR FER+G + DV++P+D Y+ + +GF FV+F + +A A
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 123 MNGKRFAGREISVVLAAESRKRPE 146
+GK GRE+ V LA R E
Sbjct: 80 TDGKLVDGRELRVTLAKYDRPSDE 103
Score = 58 (25.5 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 19/55 (34%), Positives = 22/55 (40%)
Query: 198 TPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPN 252
+P R D SP RR S PP+E G+ RRS S S R N
Sbjct: 143 SPPSRDRRD---SPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSN 194
Score = 45 (20.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRN 250
S SPRRR P R R +R S DS DRR+
Sbjct: 116 SRSPRRRS-RSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRD 157
Score = 39 (18.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 217 EHPGSPRGPPQERGAEYSRRSYSPGYDDSADRR 249
E G G + R RRS SP Y S R
Sbjct: 103 ERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPR 135
Score = 37 (18.1 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 242 YDDSADRRNPNGNGYGEK 259
YD +D R G G G +
Sbjct: 97 YDRPSDERGGRGGGGGRR 114
>UNIPROTKB|F1S0E2 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:CU469321 Ensembl:ENSSSCT00000004768 Uniprot:F1S0E2
Length = 240
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 74 RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133
RPE+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A +++N K GR+I
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 60
Query: 134 SVVLAAESRKRPEEMRQRHR 153
+ A RK P +M+ + R
Sbjct: 61 EIQFAQGDRKTPGQMKSKER 80
>UNIPROTKB|J9NZF4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03008509
Ensembl:ENSCAFT00000047953 OMA:PRRFAYV Uniprot:J9NZF4
Length = 318
Score = 199 (75.1 bits), Expect = 8.7e-16, P = 8.7e-16
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 74 RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133
RPE+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A +++N K GR+I
Sbjct: 79 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 138
Query: 134 SVVLAAESRKRPEEMRQRHR 153
+ A RK P +M+ + R
Sbjct: 139 EIQFAQGDRKTPGQMKSKER 158
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 172 (65.6 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
Score = 36 (17.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 13/50 (26%), Positives = 16/50 (32%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADR 248
P PR++ R R R + R SR YS S R
Sbjct: 105 PPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTR 154
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 141 (54.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SLLV NI ++L F ++G V DV++P+D TG+ RGFAFV++ EA +A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 123 MNGKRFAGREISVVLA 138
++G+ GREI+V A
Sbjct: 77 LDGRVVDGREITVQFA 92
Score = 68 (29.0 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 20/69 (28%), Positives = 26/69 (37%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSAD---RRNPNGNG 255
P P+ S SPRR P R PP+ R SR DD + R+
Sbjct: 109 PPPKSRRSRSRSPRRSR--SPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS 166
Query: 256 YGEKSGYEE 264
Y + +EE
Sbjct: 167 YDRRERHEE 175
Score = 53 (23.7 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 209 ISPRRRHIEHPGSPRGPPQERGAEYSRRSYSP 240
+SP RR E SP P R + + RS SP
Sbjct: 268 MSPERRSNERSPSPGSPAPLRKVDAASRSQSP 299
Score = 42 (19.8 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 209 ISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRN 250
+SP +R E SPR R + S P + S +RR+
Sbjct: 235 VSPDKRSNERSPSPRRSLSPRSPALQKAS--PSKEMSPERRS 274
>UNIPROTKB|I3LRW8 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:FP565487
Ensembl:ENSSSCT00000025710 OMA:SAPPRRY Uniprot:I3LRW8
Length = 188
Score = 136 (52.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 82 FERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAES 141
FE++G V DVY+P+D Y E RGFAFV+ D +A +A M+G GRE+ V +A
Sbjct: 1 FEKYGRVGDVYIPRDRYNKESRGFAFVRXHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 60
Query: 142 RKRPEEMRQR 151
R P+ R
Sbjct: 61 RP-PDSHHSR 69
Score = 55 (24.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 221 SPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQA 267
S RGPP R G Y RRS SP + R+ + + +S Y +++
Sbjct: 68 SRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKS 116
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 38/80 (47%), Positives = 49/80 (61%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ PE LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESR 142
M+G GRE+ V +A R
Sbjct: 75 MDGAILDGRELRVQMARYGR 94
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+G GRE+ V +A R P+ R
Sbjct: 75 MDGAVLDGRELRVQMARYGRP-PDSHHSR 102
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 141 (54.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + L+ + L A F ++G + +V L KD T + RGFAFV F P +A A
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 122 HMNGKRFAGREISVVLAAE-----SRKRPEEMRQRHR 153
MNGK G+ I V A + SR+ P R R R
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR 104
Score = 55 (24.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 202 RQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNG 253
R + YS PRR + P P++ G YS R GY S D R P G
Sbjct: 185 RGRDGYSGPPRREPLPPRRDPYLGPRDEG--YSSRD---GYS-SRDYREPRG 230
Score = 36 (17.7 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 20/68 (29%), Positives = 25/68 (36%)
Query: 211 PRRRHIEHP--GSPRGPPQERG--------AEYSRRSYS--PGYDDSADRRNP----NGN 254
P RR P +P GP + G A R YS P + RR+P
Sbjct: 153 PPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDE 212
Query: 255 GYGEKSGY 262
GY + GY
Sbjct: 213 GYSSRDGY 220
Score = 35 (17.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 212 RRRH-IEHPGSPRGPPQERGAEYSRRSYS 239
R RH + P ERG R SYS
Sbjct: 338 RGRHRVGRPDRGLSLSMERGCPPQRDSYS 366
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 123 (48.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L F FG + +V + KD T RGF F+ F +P A++A
Sbjct: 6 GMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMR 65
Query: 122 HMNGKRFAGREISV 135
MNGK GR+I V
Sbjct: 66 PMNGKSLDGRQIRV 79
Score = 58 (25.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 18/57 (31%), Positives = 22/57 (38%)
Query: 208 SISPRRRHIEHPGS-PRGP------PQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
S+ R+ ++H G RG RG YSR GY P G GYG
Sbjct: 71 SLDGRQIRVDHAGKLARGTRGCAFRAHGRGRSYSRGGGDQGYGSGRYDSQPGGYGYG 127
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 144 (55.7 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G+V L D TG+P+G+ F ++ D A A +
Sbjct: 25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 85 LNGREFSGRALRVDNAA-SEKNKEELK 110
Score = 48 (22.0 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 220 GSPRGPPQE-RGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
G PRGP E RG R P + D R P G +G
Sbjct: 376 GEPRGPMMEQRGPPIEARGRDPR---AVDARGPIAGPRGPVAG 415
Score = 37 (18.1 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 209 ISPRRRHIEHPGSPRGPP 226
+ P R +I P +GPP
Sbjct: 338 VEPGRGYIGGPPQHQGPP 355
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 125 (49.1 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 50 (22.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 220 GSPRGPPQERGAEYSR-RSYSPGYDDSAD--RRNPNGNGYGEKS 260
G RG +RG SR S S GY S D G GYG++S
Sbjct: 113 GFSRGGG-DRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGDRS 155
Score = 35 (17.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 QERGAEYSRRSYSPGYDDSAD 247
+ +G Y RS Y DS D
Sbjct: 145 RSQGGGYGDRSSGGSYRDSYD 165
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 130 (50.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + + L F FG + +V + KD T RGF F+ F DP A++A
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
MNG+ GR+I V A +S +
Sbjct: 66 AMNGESLDGRQIRVDHAGKSAR 87
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
GS R + G Y Y GY S D + GY SG
Sbjct: 113 GSGRYDSRPGGYGYGY-GYGYGYGRSRDYGGRSQGGYDRYSG 153
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 121 (47.7 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + + L F FG + +V + KD T RGF F+ F +P A+ A
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
MNG+ GR+I V A +S +
Sbjct: 66 AMNGESLDGRQIRVDHAGKSAR 87
Score = 47 (21.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 15/50 (30%), Positives = 17/50 (34%)
Query: 212 RRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
R R G +G R + Y GY S D N GY SG
Sbjct: 99 RGRSYSRGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSG 148
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 125 (49.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 39 (18.8 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 233 YSRRSYSPGYDD 244
YS RS S GY D
Sbjct: 142 YSSRSQSGGYSD 153
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 125 (49.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 39 (18.8 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 233 YSRRSYSPGYDD 244
YS RS S GY D
Sbjct: 142 YSSRSQSGGYSD 153
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 125 (49.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + + L F FG + +V + KD T RGF F+ F +P A++A
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
MNG+ GR+I V A +S +
Sbjct: 66 AMNGESLDGRQIRVDHAGKSAR 87
Score = 39 (18.8 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 224 GPPQERGA-EYSRR--SYSPGYDDSADRRNPNGNGYGEKSG 261
G Q G+ Y R Y GY S D + GY SG
Sbjct: 107 GGDQGYGSGRYDSRPGGYGYGYGRSRDYSGRSQGGYDRYSG 147
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 125 (49.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 41 (19.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 233 YSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQAH 268
YS RS S GY D + +G Y + Y+ H
Sbjct: 142 YSSRSQSGGYSDRS-----SGGSY--RDSYDSYATH 170
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 125 (49.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 41 (19.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 233 YSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQAH 268
YS RS S GY D + +G Y + Y+ H
Sbjct: 142 YSSRSQSGGYSDRS-----SGGSY--RDSYDSYATH 170
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 147 (56.8 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L +RN+P E+L+ F +FG + +++ P D T +P+GFAFV F+ P A A
Sbjct: 405 GRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYA 464
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G+ F GR + V+ + ++ E+
Sbjct: 465 EVDGQVFQGRMLHVLPSTIKKEASED 490
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 38/105 (36%), Positives = 52/105 (49%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYY-TGEPRGFAFVQFVDPYE 115
++Q +LVRNIP E++ F FG ++ V LPK TG RGF FV F+ +
Sbjct: 827 RKQTTSKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQD 886
Query: 116 AAEA-Q---H--HMNGKR----FAGREISVVLAAESRKRPEEMRQ 150
A A Q H H+ G+R +A E+S L A RK E +
Sbjct: 887 AKRAFQALCHSTHLYGRRLVLEWADSEVS--LQALRRKTAEHFHE 929
Score = 42 (19.8 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQ 266
S +P+ + + P P GP +E AE + +P + A+ R + E+ EE +
Sbjct: 666 SSAPQTKEPQDP--PAGPAEEDRAEPETYNETPEGEKPAEGRAEDCPAKVEEEEEEEEE 722
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 123 (48.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G +++V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MAGMNGKTVDGRQIRVDQAGKS 85
Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 241 GYDDSADRRNPNGNGYG 257
GY S+ N +G GYG
Sbjct: 115 GYGGSSRFDNRSGGGYG 131
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 129 (50.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G LLV + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 50 (22.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 220 GSPRGPPQERGAEYSR-RSYSPGYDDSADRRNPNGNG-YGEKS 260
G RG +RG SR S S GY+ S D N G YG++S
Sbjct: 113 GFSRGGG-DRGYGGSRFDSRSGGYNGSRDYYNSRSQGGYGDRS 154
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 149 (57.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ V+NI + +E R FE++G V L +D TG+ RGF FV F +A++A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
+N K F G+ + V A + +R EE+R+ +
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 35 (17.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 226 PQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
P+E+ + S+ G D + + G+G
Sbjct: 405 PEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFG 436
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+P +P +++ F G V DV++PK++ TG P+GFAFV+F +AA A
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 124 NGKRFAGREISV 135
NG F R I+V
Sbjct: 393 NGHMFGKRPIAV 404
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 130 (50.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V N+ PEE++A F+ G + V + D +TG+P+G+A+V+F +P A+A
Sbjct: 69 SIFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALV- 127
Query: 123 MNGKRFAGREISVV 136
+N F GR + VV
Sbjct: 128 LNESVFRGRNLKVV 141
Score = 43 (20.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 209 ISPRRRHIEHPG-SPRGPPQERGAEYSRRSYSPG 241
+ P+R ++ PG S RG + RG Y R + G
Sbjct: 140 VVPKRTNL--PGMSSRGRGRGRGRGYGRGGFPRG 171
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 125 (49.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 37 (18.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 QERGAEYSRRSYSPGYDDSAD 247
+ +G Y RS Y DS D
Sbjct: 145 RSQGGSYGDRSSGGSYRDSYD 165
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 121 (47.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + L F FG + +V + KD T RGF F+ F +P A+ A
Sbjct: 6 GKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
MNG+ GR+I V A +S +
Sbjct: 66 AMNGESLDGRQIRVDHAGKSAR 87
Score = 38 (18.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 220 GSPRGP-PQERGA-EYSRR------SYSPGYDDSADRRNPNGNGYGEKSG 261
G PRG Q G+ Y R Y GY S D + GY SG
Sbjct: 102 GYPRGGGDQGYGSGRYDNRPGAYGFGYGYGYGRSRDYGGRSQGGYDRYSG 151
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 138 (53.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + L+ + L A F ++G + +V L KD T + RGFAF+ F P +A A
Sbjct: 8 GKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVR 67
Query: 122 HMNGKRFAGREISVVLAA----ESRKR-PEEMRQRHR 153
MNGK G+ I V A ES +R P R R R
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESGRRGPPLSRSRGR 104
Score = 49 (22.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 232 EYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
EY+ R Y G+ + D P+ GYG++ GY
Sbjct: 240 EYTYRDY--GHSSARDEC-PS-RGYGDRDGY 266
Score = 39 (18.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYD 243
G PR PP RG Y+ +D
Sbjct: 114 GGPRRPPS-RGGPADDGGYAGDFD 136
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 125 (49.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 50 (22.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 220 GSPRGPPQERGAEYSR-RSYSPGYDDSAD--RRNPNGNGYGEKS 260
G RG +RG SR S S GY S D G GYG++S
Sbjct: 113 GFSRGGG-DRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGDRS 155
Score = 35 (17.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 QERGAEYSRRSYSPGYDDSAD 247
+ +G Y RS Y DS D
Sbjct: 145 RSQGGGYGDRSSGGSYRDSYD 165
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 131 (51.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F +FG + +V L KD T + RGFAFV + +P +A +A
Sbjct: 8 GKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 EMNGKPLDGKPIKVEQATK 86
Score = 61 (26.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 224 GPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
GPP +Y R YS G+ S D GY ++ GY
Sbjct: 217 GPPPR---DYPYREYS-GHSSSRDDYGSGSRGYSDRDGY 251
Score = 56 (24.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 201 PRQHEDY-SISPRRRHIEHPGSPRGPPQERGA--EYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + D S R + G+ R P RG YS S YDD + + +GYG
Sbjct: 257 PRGYIDRPSAGSYRDPYDGYGNSRSAPPSRGPPPSYSGSGGSSRYDDYG---SSSRDGYG 313
Query: 258 EKSGYEETQA 267
+ Y +++
Sbjct: 314 SRDSYPSSRS 323
Score = 54 (24.1 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 202 RQHEDYSISPRRRHIEHPGSPRGPPQERGAEY-SRRSYSP-GYDDSADRRN----PNGNG 255
R + Y PRR + GPP R Y S+ SYS Y S D R+ P
Sbjct: 167 RDRDPYGPPPRRDSLMSRRDD-GPPH-RDDHYGSKDSYSSRDYMSSRDSRDYGPPPRDYP 224
Query: 256 YGEKSGYEETQ 266
Y E SG+ ++
Sbjct: 225 YREYSGHSSSR 235
Score = 50 (22.7 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 217 EHPG-SPRGPPQ-ERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
+ PG RGPP ERG Y R YS S+ R P G G G
Sbjct: 332 DRPGRQERGPPPLERG--YPRE-YS-----SSSRGAPRGGGRG 366
Score = 48 (22.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 219 PGSPRGPPQERGAEYSRRSYSPGYDDSADR-RNPNG 253
P RGPP+ G +RS G R R+P G
Sbjct: 138 PPMKRGPPERNGGPPPKRSAPSGPMGRPSRDRDPYG 173
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 124 (48.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 37 (18.1 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 QERGAEYSRRSYSPGYDDSAD 247
+ +G Y RS Y DS D
Sbjct: 145 RSQGGSYGYRSSGGSYRDSYD 165
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 124 (48.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 37 (18.1 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 QERGAEYSRRSYSPGYDDSAD 247
+ +G Y RS Y DS D
Sbjct: 145 RSQGGSYGYRSSGGSYRDSYD 165
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 124 (48.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 37 (18.1 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 QERGAEYSRRSYSPGYDDSAD 247
+ +G Y RS Y DS D
Sbjct: 145 RSQGGSYGYRSSGGSYRDSYD 165
>UNIPROTKB|I3L6H1 [details] [associations]
symbol:SRSF10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 Ensembl:ENSSSCT00000026259 OMA:PRYAYLI
Uniprot:I3L6H1
Length = 183
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL VRN+ R E+LR F R+G + DVY+ ++T F++ +F D +A +A H+
Sbjct: 11 SLFVRNVAGCFRSEDLRREFGRYGPIVDVYVLLKFWTRWKFLFSYAKFEDVRDAEDALHN 70
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
++ K GR+I + A RK P +M+ +
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 132 (51.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
MNGK G+ I V E +P R RH
Sbjct: 68 DMNGKSLDGKAIKV----EQATKPSFERGRH 94
Score = 58 (25.5 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 199 PVPRQHEDYSISPRRR--HIEHPGSPRGPPQERGA-EYSR--RSYS-PGYDDSADRRNPN 252
P+P + + Y +SPR + S R P R +Y+ R Y+ Y S+ R +
Sbjct: 198 PLPSRRDVY-LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYP 256
Query: 253 GNGYGEKSGY 262
GYG++ GY
Sbjct: 257 SRGYGDRDGY 266
Score = 49 (22.3 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 223 RG-PPQ-ERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
RG PP ERG SR SYS S+ R P G G G
Sbjct: 346 RGLPPSVERGYPSSRDSYS-----SSSRGAPRGAGPG 377
Score = 49 (22.3 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 271 DYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 326
Query: 262 YEETQA 267
Y +++
Sbjct: 327 YSSSRS 332
Score = 48 (22.0 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 117 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
Score = 46 (21.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNP-NGNGYGEKSGY 262
P PP+ RG R + G S R P + G+ + GY
Sbjct: 96 PPPPPRSRGPP---RGFGAGRGGSGGTRGPPSRGGHMDDGGY 134
Score = 46 (21.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
P+ R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 182 PLSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 233
Score = 38 (18.4 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPSPKRSAPSG 169
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 129 (50.5 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L + + D + L F ++GV+ +V++ ++ T RGF FV F +P +A +A
Sbjct: 3 DEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDA 62
Query: 120 QHHMNGKRFAGREISV 135
MNGK GR I V
Sbjct: 63 LEGMNGKSVDGRTIRV 78
Score = 38 (18.4 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 238 YSPGYDDSADRRNPNGNGYGEKSG-YEE 264
YS G +R G+GYG++S Y++
Sbjct: 151 YSSGGGGGYNR--DRGSGYGDRSSSYKD 176
Score = 37 (18.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 241 GYDDSADRRNPNGNGYGEKSG 261
G D S R+ G G G KSG
Sbjct: 127 GGDRSYGDRSYGGGGGGYKSG 147
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 130 (50.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 58 (25.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/73 (35%), Positives = 30/73 (41%)
Query: 199 PVPRQHEDYSISPRR---RHIEHPGSPRGPPQERGAEYSRRSYSP--GYDDSADRR---N 250
P R DY+ PR R H S R RG YS SYS GY DR +
Sbjct: 214 PSSRDTRDYAPPPRDYAYRDYGHSSS-RDEYPSRG--YSLSSYSDRDGYGGGRDRDYSDH 270
Query: 251 PNGNGYGEKSGYE 263
P+G Y + YE
Sbjct: 271 PSGGSY--RDSYE 281
Score = 57 (25.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/56 (37%), Positives = 24/56 (42%)
Query: 205 EDYSISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
E YS S R + G R Q+RG S R Y P D S+ R P G G G
Sbjct: 319 ESYSSS--RSDVYSSGRDRVGRQDRGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 372
Score = 54 (24.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 23/88 (26%), Positives = 30/88 (34%)
Query: 185 PQGXXXXXXXXXXTPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAE----YSRRSYSP 240
P G PV R + Y PRR + P++ G YS R Y P
Sbjct: 156 PSGPVRSSSMGGRAPVSRGRDSYGGPPRREPMPSRRDVYMSPRDDGYSTKDGYSSRDY-P 214
Query: 241 GYDDSADRRNPNGN----GYGEKSGYEE 264
D+ D P + YG S +E
Sbjct: 215 SSRDTRDYAPPPRDYAYRDYGHSSSRDE 242
Score = 38 (18.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 223 RGPPQERGAEYSRRSYSPG--YDDSADRRNPNGNGYGEKSG 261
RGPP G +RS G S R P G G
Sbjct: 140 RGPPPRSGGPPPKRSAPSGPVRSSSMGGRAPVSRGRDSYGG 180
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 130 (50.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 57 (25.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 325 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 377
Score = 50 (22.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 270 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 325
Query: 262 YEETQA 267
Y +++
Sbjct: 326 YSSSRS 331
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 181 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 232
Score = 48 (22.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 116 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 157
Score = 47 (21.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 208 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 266
Query: 258 EKSGYEE 264
Y +
Sbjct: 267 RDRDYSD 273
Score = 43 (20.2 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 223 RGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
RGPP + R G R P+ G+ + GY
Sbjct: 94 RGPPPPPRSRGPPRGLRGGRGSGGTRGPPSRGGHMDDGGY 133
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 150 RGPPPRSGGPPPKRSAPSG 168
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 130 (50.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 57 (25.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 326 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 378
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 271 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 326
Query: 262 YEETQA 267
Y +++
Sbjct: 327 YSSSRS 332
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 182 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 233
Score = 48 (22.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 117 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
Score = 47 (21.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 209 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 267
Query: 258 EKSGYEE 264
Y +
Sbjct: 268 RDRDYSD 274
Score = 42 (19.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R G R P+ G+ + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDDGGY 134
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPPPKRSAPSG 169
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 130 (50.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 57 (25.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 326 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 378
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 271 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 326
Query: 262 YEETQA 267
Y +++
Sbjct: 327 YSSSRS 332
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 182 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 233
Score = 48 (22.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 117 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
Score = 47 (21.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 209 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 267
Query: 258 EKSGYEE 264
Y +
Sbjct: 268 RDRDYSD 274
Score = 42 (19.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R G R P+ G+ + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDDGGY 134
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPPPKRSAPSG 169
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 130 (50.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 57 (25.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 326 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 378
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 271 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 326
Query: 262 YEETQA 267
Y +++
Sbjct: 327 YSSSRS 332
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 182 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 233
Score = 47 (21.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 209 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 267
Query: 258 EKSGYEE 264
Y +
Sbjct: 268 RDRDYSD 274
Score = 43 (20.2 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP G YS ++ S+ R P G +SG
Sbjct: 117 GGTRGPPSH-GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
Score = 42 (19.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R G R P+ G+ + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGRGG--SGGTRGPPSHGGHMDDGGY 134
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPPPKRSAPSG 169
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 130 (50.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 57 (25.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 326 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 378
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 271 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 326
Query: 262 YEETQA 267
Y +++
Sbjct: 327 YSSSRS 332
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/67 (28%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS E+P S R P R Y +S DD R + +GYG
Sbjct: 209 PRD-DGYSTKDSYSSREYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 267
Query: 258 EKSGYEE 264
Y +
Sbjct: 268 RDRDYSD 274
Score = 48 (22.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 199 PVPRQHEDYSISPRRRHIEHPG----SPRGPPQERGAEYSRRSYSPGYDDSADRRNP 251
PV R + Y PRR + SPR YS R Y P D+ D P
Sbjct: 182 PVSRGRDGYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSREY-PSSRDTRDYAPP 237
Score = 42 (19.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
S RR + P RGPP RG R S G R P+ G+ + GY
Sbjct: 88 SFESGRRGLPPPPRSRGPP--RGLRGGRGG-SGG-----TRGPPSRGGHMDDGGY 134
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPPPKRSAPSG 169
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 130 (50.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 9 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 68
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 69 DMNGKSLDGKAIKVEQATK 87
Score = 57 (25.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 327 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 379
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 272 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 327
Query: 262 YEETQA 267
Y +++
Sbjct: 328 YSSSRS 333
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 183 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 234
Score = 48 (22.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 118 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 159
Score = 47 (21.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 210 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 268
Query: 258 EKSGYEE 264
Y +
Sbjct: 269 RDRDYSD 275
Score = 42 (19.8 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R G R P+ G+ + GY
Sbjct: 97 PPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDDGGY 135
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 152 RGPPPRSGGPPPKRSAPSG 170
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 127 (49.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G V +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
+NGK G+ I V A +
Sbjct: 68 ELNGKALDGKPIKVEQATK 86
Score = 61 (26.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/53 (39%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYSR-RSYSPGYDD--SADRRNPNGNGYG 257
S S R I G R QERG S R Y P D S+ R P G G G
Sbjct: 305 SYSSSRNDIYSSGRDRVGRQERGLPPSMDRGYPPPRDSYSSSSRGGPRGGGRG 357
Score = 53 (23.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS 260
R + D+ S R E G+ R P RG S S YDD + R+ GYG +
Sbjct: 250 RDYSDHQSGGSYRDSYEGYGNSRSAPPARGPPPSYGG-SSRYDDYSSTRD----GYGGRD 304
Query: 261 GYEETQ 266
Y ++
Sbjct: 305 SYSSSR 310
Score = 52 (23.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 224 GPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
GPP +YS R Y G+ S D + GY ++ GY
Sbjct: 213 GPPPR---DYSYRDY--GHSSSRD--DYGSRGYSDRDGY 244
Score = 48 (22.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 16/73 (21%), Positives = 25/73 (34%)
Query: 185 PQGXXXXXXXXXXTPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDD 244
P G P+ R+ + Y PRR + P++ G YS + GY
Sbjct: 143 PSGPLRSSEMGGRAPLSRERDGYGAPPRRDPMPSRRDVYMSPRDDG--YSGKDRYDGYSG 200
Query: 245 SADRRNPNGNGYG 257
+ + YG
Sbjct: 201 RDYGSSRDSRDYG 213
Score = 38 (18.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 223 RGPPQERGAEYSRRSYSPGYDDSADR--RNP---NGNGYG 257
RGPP G +RS G S++ R P +GYG
Sbjct: 127 RGPPPRSGGPPPKRSAPSGPLRSSEMGGRAPLSRERDGYG 166
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 149 (57.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L VRN+P E+L F R+G V +++ P D T +P+GFAFV F+ P A +A
Sbjct: 363 GRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 422
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G+ F GR + V+ + ++ E+
Sbjct: 423 EVDGQVFQGRMLHVLPSTIKKEASED 448
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L + + D E L F ++G + +V + KD T RGF FV F +P +A +A
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 63 MMAMNGKAVDGRQIRVDQAGKS 84
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + ++ L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 57 (25.1 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 323 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 375
Score = 54 (24.1 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 198 TPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
TPV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 178 TPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 230
Score = 50 (22.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 268 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 323
Query: 262 YEETQA 267
Y +++
Sbjct: 324 YSSSRS 329
Score = 50 (22.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/67 (28%), Positives = 26/67 (38%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y S+S DD R + +GYG
Sbjct: 206 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYG 264
Query: 258 EKSGYEE 264
Y +
Sbjct: 265 RDRDYSD 271
Score = 46 (21.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R S G R P+ GY + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGSGG-----TRGPPSRGGYMDDGGY 131
Score = 46 (21.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 114 GGTRGPPS-RGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 155
Score = 37 (18.1 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 148 RGPPPRSGGPPPKRSTPSG 166
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 126 (49.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L + + D + L F ++G + V + +D T RGF FV F +P +A +A
Sbjct: 21 DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDA 80
Query: 120 QHHMNGKRFAGREISVVLAAESRKR 144
MNGK+ GR I V A +S R
Sbjct: 81 MAAMNGKQVDGRMIRVDEAGKSGGR 105
Score = 50 (22.7 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 230 GAEYSRRS--YSPG--YDDSADRRNPNGNGYGEKSGYEETQAH 268
G YS RS YS G Y D+ ++ + +G + GY+ +H
Sbjct: 181 GGGYSNRSGGYSSGGGYRDNRNQGGYDRSGGSYRDGYDSYASH 223
Score = 37 (18.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSA 246
G R + G + S SY GYD A
Sbjct: 195 GGYRDNRNQGGYDRSGGSYRDGYDSYA 221
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 147 (56.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L +RN+P C E+L+ F + G + +V P D T +P+GFAFV ++ P A A
Sbjct: 399 GRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALA 458
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G F GR + V+ + +++ ++
Sbjct: 459 QLDGHTFQGRVLHVMASRLKKEKADQ 484
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
++Q +LVRNIP +ELR F FG ++ V LPK G RGF F+ F+ +A
Sbjct: 800 RKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDA 859
Query: 117 AEAQHHM-NGKRFAGREISVVLAAESRKRPEEMRQR 151
+A + + GR + V+ A++ + +++R++
Sbjct: 860 KKAFSALCHSTHLYGRRL-VLEWADAEETVDDLRRK 894
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 124 (48.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNGK G+ I V E K+P
Sbjct: 62 KNAAKDMNGKSLHGKAIKV----EQAKKP 86
Score = 67 (28.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 202 RQHEDYSISPRRRHIEHPGSPR----GPPQERGAEYSRRSYS-PGYDDSADRRNPNGNGY 256
R+HE YS R + HP S PP +Y+ R Y +D+ + R +GY
Sbjct: 321 RRHESYS----RGYRNHPSSRETRDYAPPHR---DYAYRDYGHSSWDEHSSRGYSYHDGY 373
Query: 257 GEKSGYEETQ 266
GE G + ++
Sbjct: 374 GEALGRDHSE 383
Score = 52 (23.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 379 RDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 435
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 124 (48.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNGK G+ I V E K+P
Sbjct: 62 KNAAKDMNGKSLHGKAIKV----EQAKKP 86
Score = 67 (28.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 202 RQHEDYSISPRRRHIEHPGSPR----GPPQERGAEYSRRSYS-PGYDDSADRRNPNGNGY 256
R+HE YS R + HP S PP +Y+ R Y +D+ + R +GY
Sbjct: 321 RRHESYS----RGYRNHPSSRETRDYAPPHR---DYAYRDYGHSSWDEHSSRGYSYHDGY 373
Query: 257 GEKSGYEETQ 266
GE G + ++
Sbjct: 374 GEALGRDHSE 383
Score = 52 (23.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 379 RDHSEHLSGSSYRDALQRYGTAHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 435
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 124 (48.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNGK G+ I V E K+P
Sbjct: 62 KNAAKDMNGKSLHGKAIKV----EQAKKP 86
Score = 67 (28.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 202 RQHEDYSISPRRRHIEHPGSPR----GPPQERGAEYSRRSYS-PGYDDSADRRNPNGNGY 256
R+HE YS R + HP S PP +Y+ R Y +D+ + R +GY
Sbjct: 321 RRHESYS----RGYRNHPSSRETRDYAPPHR---DYAYRDYGHSSWDEHSSRGYSYHDGY 373
Query: 257 GEKSGYEETQ 266
GE G + ++
Sbjct: 374 GEALGRDHSE 383
Score = 52 (23.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 379 RDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 435
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 124 (48.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNGK G+ I V E K+P
Sbjct: 62 KNAAKDMNGKSLHGKAIKV----EQAKKP 86
Score = 67 (28.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 202 RQHEDYSISPRRRHIEHPGSPR----GPPQERGAEYSRRSYS-PGYDDSADRRNPNGNGY 256
R+HE YS R + HP S PP +Y+ R Y +D+ + R +GY
Sbjct: 321 RRHESYS----RGYRNHPSSRETRDYAPPHR---DYAYRDYGHSSWDEHSSRGYSYHDGY 373
Query: 257 GEKSGYEETQ 266
GE G + ++
Sbjct: 374 GEALGRDHSE 383
Score = 52 (23.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 379 RDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 435
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 130 (50.8 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 10 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 69
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 70 DMNGKSLDGKAIKVEQATK 88
Score = 49 (22.3 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 184 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 235
Score = 48 (22.0 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 119 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 160
Score = 47 (21.6 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 211 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 269
Query: 258 EKSGYEE 264
Y +
Sbjct: 270 RDRDYSD 276
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R G R P+ G+ + GY
Sbjct: 98 PPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDDGGY 136
Score = 37 (18.1 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 153 RGPPPRSGGPPPKRSAPSG 171
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 130 (50.8 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 54 (24.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S + R + G R QERG S R Y P D S+ R P G G G
Sbjct: 326 SYTSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 378
Score = 50 (22.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 21/69 (30%), Positives = 29/69 (42%)
Query: 203 QHEDYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
+ DYS P R E G+ R P RG S S YDD + R+ G G G
Sbjct: 268 RERDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GS 323
Query: 259 KSGYEETQA 267
+ Y +++
Sbjct: 324 RDSYTSSRS 332
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 209 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 267
Query: 258 EKSGYEE 264
+ Y +
Sbjct: 268 RERDYSD 274
Score = 48 (22.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 182 PVSRGRDGYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 233
Score = 42 (19.8 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
S RR + P RGPP RG R S G R P+ G+ + GY
Sbjct: 88 SFESGRRGLPPPPRSRGPP--RGLRGGRGG-SGG-----TRGPPSRGGHMDDGGY 134
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPPPKRSAPSG 169
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 130 (50.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 54 (24.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R Q+RG S R Y P D S+ R P G G G
Sbjct: 326 SYSSSRSDLYSSGRDRVGRQDRGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 378
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 206 DYSISPR----RRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSG 261
DYS P R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 271 DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRDS 326
Query: 262 YEETQA 267
Y +++
Sbjct: 327 YSSSRS 332
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 182 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 233
Score = 48 (22.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 117 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
Score = 47 (21.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 209 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 267
Query: 258 EKSGYEE 264
Y +
Sbjct: 268 RDRDYSD 274
Score = 42 (19.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R G R P+ G+ + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDDGGY 134
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPPPKRSAPSG 169
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 68 NIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKR 127
NIP + E+L+ F G V L D TG+P+G+ F ++ D A A ++NG+
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 128 FAGREISVVLAAESRKRPEEMR 149
F+GR + V AA S K EE++
Sbjct: 63 FSGRALRVDNAA-SEKNKEELK 83
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 31/76 (40%), Positives = 39/76 (51%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V N P EEL F G + +V + D TG PRGFAF++F + A A
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 123 MNGKRFAGREISVVLA 138
MNG F GR + V LA
Sbjct: 66 MNGAEFNGRPLRVNLA 81
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 130 (50.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 49 (22.3 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 182 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 233
Score = 48 (22.0 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 117 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
Score = 47 (21.6 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 209 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 267
Query: 258 EKSGYEE 264
Y +
Sbjct: 268 RDRDYSD 274
Score = 42 (19.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R G R P+ G+ + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDDGGY 134
Score = 37 (18.1 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 151 RGPPPRSGGPPPKRSAPSG 169
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 130 (50.8 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 49 (22.3 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 181 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 232
Score = 48 (22.0 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 116 GGTRGPPS-RGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 157
Score = 47 (21.6 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 201 PRQHEDYSISPRRRHIEHPGS--PRG-PPQERGAEYSRRSYSPGYDDSADRRNPNGNGYG 257
PR + YS ++P S R P R Y +S DD R + +GYG
Sbjct: 208 PRD-DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG 266
Query: 258 EKSGYEE 264
Y +
Sbjct: 267 RDRDYSD 273
Score = 43 (20.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 223 RGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
RGPP + R G R P+ G+ + GY
Sbjct: 94 RGPPPPPRSRGPPRGLRGGRGSGGTRGPPSRGGHMDDGGY 133
Score = 37 (18.1 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 150 RGPPPRSGGPPPKRSAPSG 168
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
K N+ + V N+P +L F RFG + V + +++ TG +G+AFV +V P +A
Sbjct: 39 KSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQA 98
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKR 144
+A +GK GR + VV A+SR++
Sbjct: 99 VKALD-AHGKDLQGRSL-VVRIAKSREQ 124
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
K N+ + V N+P +L F RFG + V + +++ TG +G+AFV +V P +A
Sbjct: 39 KSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQA 98
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKR 144
+A +GK GR + VV A+SR++
Sbjct: 99 VKALD-AHGKDLQGRSL-VVRIAKSREQ 124
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 141 (54.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 21 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 80
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 81 LNGREFSGRALRVDNAA-SEKNKEELK 106
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 141 (54.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ V+NI L+ E F FG + +YL KD G+ +GF FV F D A +A
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKA 289
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
+N K G++I V A + R+R EE+++++
Sbjct: 290 VEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 141 (54.7 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 141 (54.7 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 142 (55.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L VRN+P E+L F ++G + +++ P D T +P+GFAF+ ++ P A +A
Sbjct: 78 GRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYA 137
Query: 122 HMNGKRFAGREISVVLAAESRKRPEEM 148
M+G+ F GR + ++ + + + E++
Sbjct: 138 EMDGQVFQGRMMHLLPSTIKKLKIEDI 164
Score = 130 (50.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYY-TGEPRGFAFVQFVDPYE 115
K+Q +LVRNIP E+R F FG ++ V LPK TG RGF FV F+ +
Sbjct: 490 KKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQD 549
Query: 116 AAEAQHHM-NGKRFAGREISVVLAAESRKRPEEMRQR 151
A +A + + + GR + V+ A++ + E +R+R
Sbjct: 550 AKKAFNALCHSTHLYGRRL-VLEWADTEETVEALRRR 585
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 141 (54.7 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 141 (54.7 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 141 (54.7 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 125 (49.1 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + ++ L KD T + RGFAFV F P +A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 59 (25.8 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 199 PVPRQHEDYSISPRRR--HIEHPGSPRGPPQERGA-EYSR--RSYS-PGYDDSADRRNPN 252
P+P + + Y +SPR + S R P R +Y+ R Y+ Y S+ R +
Sbjct: 195 PLPSRRDVY-LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYP 253
Query: 253 GNGYGEKSGY 262
GYG++ GY
Sbjct: 254 SRGYGDRDGY 263
Score = 57 (25.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 208 SISPRRRHIEHPGSPRGPPQERGAEYS-RRSYSPGYDD--SADRRNPNGNGYG 257
S S R + G R QERG S R Y P D S+ R P G G G
Sbjct: 323 SYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRG 375
Score = 54 (24.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 198 TPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
TPV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 178 TPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYPSSRDTRD 230
Score = 51 (23.0 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS 260
R++ D+ S R E G+ R P RG S S YDD + R+ G G G +
Sbjct: 267 REYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRD 322
Query: 261 GYEETQA 267
Y +++
Sbjct: 323 SYSSSRS 329
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R S G R P+ GY + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGSGG-----TRGPPSRGGYMDDGGY 131
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 114 GGTRGPPS-RGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 155
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/77 (29%), Positives = 29/77 (37%)
Query: 199 PVPRQH--EDYSISPRRRHIEHPGSPRGPPQERGAEYSRR----SYSPGYDDSADRRN-P 251
P PR + DYS S R G R EYS SY Y+ + R+ P
Sbjct: 233 PPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRDREYSDHPSGGSYRDSYESYGNSRSAP 292
Query: 252 NGNG----YGEKSGYEE 264
G YG S Y++
Sbjct: 293 PTRGPPPSYGGSSRYDD 309
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 148 RGPPPRSGGPPPKRSTPSG 166
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 141 (54.7 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 141 (54.7 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 141 (54.7 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 141 (54.7 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 141 (54.7 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 141 (54.7 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 142 (55.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 58 EQNHGSLLVRNIPLDCR-PEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E+ L++RN+P C+ P+EL+ F ++G V D Y+PK G+ GFAFV A
Sbjct: 131 EKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKK-GGQMCGFAFVIMKKNSAA 189
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRPEEMR 149
+A G + GRE++V A E K E+M+
Sbjct: 190 EKAVEGCQGLKIDGREVAVDFAVEKSKW-EQMK 221
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 142 (55.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 58 EQNHGSLLVRNIPLDCR-PEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E+ L++RN+P C+ P+EL+ F ++G V D Y+PK G+ GFAFV A
Sbjct: 131 EKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKK-GGQMCGFAFVIMKKNSAA 189
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRPEEMR 149
+A G + GRE++V A E K E+M+
Sbjct: 190 EKAVEGCQGLKIDGREVAVDFAVEKSKW-EQMK 221
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V L D TG+P+G+ F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMR 149
+NG+ F+GR + V AA S K EE++
Sbjct: 77 LNGREFSGRALRVDNAA-SEKNKEELK 102
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L VRN+P E+L F ++G + +++ P D T +P+GFAF+ F+ P A +A
Sbjct: 402 GRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYS 461
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G+ F GR + V+ + ++ E+
Sbjct: 462 EVDGQVFQGRMLHVLPSTIKKEASED 487
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYY-TGEPRGFAFVQFVDPYE 115
++Q +LVRNIP E+R F FG ++ V LPK TG RGF FV F+ +
Sbjct: 827 RKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQD 886
Query: 116 AAEAQHHM-NGKRFAGREISVVLAAESRKRPEEMRQR 151
A A + + + GR + V+ A+S + +R++
Sbjct: 887 AKRAFNALCHSTHLYGRRL-VLEWADSEVTLQALRRK 922
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L VRN+P E+L F ++G + +++ P D T +P+GFAFV F+ P A +A
Sbjct: 403 GRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 462
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G+ F GR + V+ + ++ E+
Sbjct: 463 EVDGQVFQGRMLHVLPSTIKKEASED 488
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 35/103 (33%), Positives = 47/103 (45%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYY-TGEPRGFAFVQFVDPYE 115
++Q +LVRNIP E+R F FG ++ V LPK TG RGF FV F +
Sbjct: 832 RKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQD 891
Query: 116 AAEAQH------HMNGKRFA--GREISVVLAAESRKRPEEMRQ 150
A A + H+ G+R + V L A RK E +
Sbjct: 892 AKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTAEHFHE 934
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 121 (47.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISV 135
A MNGK G+ I V
Sbjct: 62 KNAAKDMNGKSLHGKAIKV 80
Score = 67 (28.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 202 RQHEDYSISPRRRHIEHPGSPR----GPPQERGAEYSRRSYS-PGYDDSADRRNPNGNGY 256
R+HE YS R + HP S PP +Y+ R Y +D+ + R +GY
Sbjct: 321 RRHESYS----RGYRNHPSSRETRDYAPPHR---DYAYRDYGHSSWDEHSSRGYSYHDGY 373
Query: 257 GEKSGYEETQ 266
GE G + ++
Sbjct: 374 GEALGRDHSE 383
Score = 52 (23.4 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 379 RDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 435
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + + E L F ++G V +V + KD + RGF FV F +P +A +A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 125 (49.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 42 (19.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 233 YSRRSYSPGYDDSADRRNPNGNGYGEKSGYEETQ 266
YS RS S GY D R+ G+ YE Q
Sbjct: 142 YSSRSQSGGYSD----RSSGGSYRDSYDSYEAGQ 171
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 142 (55.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L VRN+P E+L F ++G + +++ P D T +P+GFAF+ ++ P A +A
Sbjct: 402 GRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYA 461
Query: 122 HMNGKRFAGREISVVLAAESRKRPEEM 148
M+G+ F GR + ++ + + + E++
Sbjct: 462 EMDGQVFQGRMMHLLPSTIKKLKIEDI 488
Score = 130 (50.8 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYY-TGEPRGFAFVQFVDPYE 115
K+Q +LVRNIP E+R F FG ++ V LPK TG RGF FV F+ +
Sbjct: 814 KKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQD 873
Query: 116 AAEAQHHM-NGKRFAGREISVVLAAESRKRPEEMRQR 151
A +A + + + GR + V+ A++ + E +R+R
Sbjct: 874 AKKAFNALCHSTHLYGRRL-VLEWADTEETVEALRRR 909
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G LLV + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G LLV + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 141 (54.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 76 EELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135
+EL+ F FG + DV + +D YTG+ +GF F+QF EA EA MNG AGREI V
Sbjct: 603 QELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKV 662
Query: 136 VLAAESR 142
A +S+
Sbjct: 663 GYAQDSK 669
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 141 (54.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 76 EELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135
+EL+ F FG + DV + +D YTG+ +GF F+QF EA EA MNG AGREI V
Sbjct: 603 QELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKV 662
Query: 136 VLAAESR 142
A +S+
Sbjct: 663 GYAQDSK 669
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 107 (42.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G + DV + D + RGFAFV F + +A EA+ NG GR I V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANGMELDGRRIRVD 192
Query: 137 LAAESRKRP 145
+ KRP
Sbjct: 193 FSIT--KRP 199
Score = 76 (31.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD-SADRRNPNGNGYGEKSG 261
D+SI+ +R H PG G P R +Y R Y GYDD R+ G G G G
Sbjct: 192 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGG 250
Query: 262 YEETQ 266
+ Q
Sbjct: 251 WRAVQ 255
Score = 45 (20.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 227 QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
Q+R Y RRS SP Y R Y +
Sbjct: 255 QDRDQFYRRRSPSPYYSRGGYRSRSRSRSYSPR 287
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 127 (49.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G V +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
+NGK G+ I V A +
Sbjct: 68 ELNGKALDGKPIKVEQATK 86
Score = 51 (23.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 17/73 (23%), Positives = 25/73 (34%)
Query: 185 PQGXXXXXXXXXXTPVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDD 244
P G P+ R+ + Y PRR I P++ G YS + GY
Sbjct: 143 PSGPVRSSGMGGRAPLSRERDGYGAPPRRDPIPSRRDVYMSPRDDG--YSGKDRYDGYSG 200
Query: 245 SADRRNPNGNGYG 257
+ + YG
Sbjct: 201 RDYGSSRDSRDYG 213
Score = 49 (22.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 224 GPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
GPP +Y+ R Y G+ S D + GY ++ GY
Sbjct: 213 GPPPR---DYAYRDY--GHSSSRD--DYGSRGYSDRDGY 244
Score = 42 (19.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 210 SPRRRHIEHPGSPRGPPQERGAEYSR 235
+P RR P RGPP RG SR
Sbjct: 91 APSRRGPPPPPRSRGPP--RGLRGSR 114
Score = 37 (18.1 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 127 RGPPPRSGGPPPKRSAPSG 145
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 106 (42.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G + DV + D + RGFAFV F + +A EA+ NG GR I V
Sbjct: 125 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 184
Query: 137 LAAESRKRP 145
+ KRP
Sbjct: 185 FSIT--KRP 191
Score = 75 (31.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD----SADRRNPNGNGYGE 258
D+SI+ +R H PG G P R +Y R Y GYDD S R G G G
Sbjct: 184 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW 242
Query: 259 KSGYEETQAH 268
++ + Q +
Sbjct: 243 RAAQDRDQIY 252
Score = 45 (20.9 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 227 QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
Q+R Y RRS SP Y R Y +
Sbjct: 246 QDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 278
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 118 (46.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNG G+ I V E K+P
Sbjct: 62 KNAAKDMNGTSLHGKAIKV----EQAKKP 86
Score = 67 (28.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 202 RQHEDYSISPRRRHIEHPGSPR----GPPQERGAEYSRRSYS-PGYDDSADRRNPNGNGY 256
R+HE YS R + HP S PP +Y+ R Y +D+ + R +GY
Sbjct: 321 RRHESYS----RGYRNHPSSRETRDYAPPHR---DYAYRDYGHSSWDEHSSRGYSYHDGY 373
Query: 257 GEKSGYEETQ 266
GE G + ++
Sbjct: 374 GEALGRDHSE 383
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 379 RDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 435
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 106 (42.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G + DV + D + RGFAFV F + +A EA+ NG GR I V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 137 LAAESRKRP 145
+ KRP
Sbjct: 193 FSIT--KRP 199
Score = 75 (31.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD----SADRRNPNGNGYGE 258
D+SI+ +R H PG G P R +Y R Y GYDD S R G G G
Sbjct: 192 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW 250
Query: 259 KSGYEETQAH 268
++ + Q +
Sbjct: 251 RAAQDRDQIY 260
Score = 45 (20.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 227 QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
Q+R Y RRS SP Y R Y +
Sbjct: 254 QDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 106 (42.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G + DV + D + RGFAFV F + +A EA+ NG GR I V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 137 LAAESRKRP 145
+ KRP
Sbjct: 193 FSIT--KRP 199
Score = 75 (31.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD----SADRRNPNGNGYGE 258
D+SI+ +R H PG G P R +Y R Y GYDD S R G G G
Sbjct: 192 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW 250
Query: 259 KSGYEETQAH 268
++ + Q +
Sbjct: 251 RAAQDRDQIY 260
Score = 45 (20.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 227 QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
Q+R Y RRS SP Y R Y +
Sbjct: 254 QDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 106 (42.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G + DV + D + RGFAFV F + +A EA+ NG GR I V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 137 LAAESRKRP 145
+ KRP
Sbjct: 193 FSIT--KRP 199
Score = 75 (31.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD----SADRRNPNGNGYGE 258
D+SI+ +R H PG G P R +Y R Y GYDD S R G G G
Sbjct: 192 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW 250
Query: 259 KSGYEETQAH 268
++ + Q +
Sbjct: 251 RAAQDRDQIY 260
Score = 45 (20.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 227 QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
Q+R Y RRS SP Y R Y +
Sbjct: 254 QDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 106 (42.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G + DV + D + RGFAFV F + +A EA+ NG GR I V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 137 LAAESRKRP 145
+ KRP
Sbjct: 193 FSIT--KRP 199
Score = 75 (31.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD----SADRRNPNGNGYGE 258
D+SI+ +R H PG G P R +Y R Y GYDD S R G G G
Sbjct: 192 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW 250
Query: 259 KSGYEETQAH 268
++ + Q +
Sbjct: 251 RAAQDRDQIY 260
Score = 45 (20.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 227 QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
Q+R Y RRS SP Y R Y +
Sbjct: 254 QDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 106 (42.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G + DV + D + RGFAFV F + +A EA+ NG GR I V
Sbjct: 133 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Query: 137 LAAESRKRP 145
+ KRP
Sbjct: 193 FSIT--KRP 199
Score = 75 (31.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD----SADRRNPNGNGYGE 258
D+SI+ +R H PG G P R +Y R Y GYDD S R G G G
Sbjct: 192 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGW 250
Query: 259 KSGYEETQAH 268
++ + Q +
Sbjct: 251 RAAQDRDQIY 260
Score = 45 (20.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 227 QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
Q+R Y RRS SP Y R Y +
Sbjct: 254 QDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + + L F FG + +V + KD T RGF F+ F +P A++A
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
MNG+ GR+I V A +S +
Sbjct: 66 AMNGESLDGRQIRVDHAGKSAR 87
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 138 (53.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L+ F +FG + +V +P+ G+ RGFAFVQF + EA +A M
Sbjct: 116 LIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKP-DGKMRGFAFVQFKNLLEAGKALKGM 174
Query: 124 NGKRFAGREISVVLAAESRK 143
N K GR ++V A K
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194
Score = 35 (17.4 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 234 SRRSYS-PGYDDSADRRNPNGNGYGEKSGYEE 264
S +S S P Y+ R P +++G EE
Sbjct: 197 STQSASIPDYEGEEKRPEPEHQELDQENGREE 228
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 132 (51.5 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V N+ PEE++A F+ G + V + D +TG+P+GFA+V+F +P A+A
Sbjct: 74 SIFVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALV- 132
Query: 123 MNGKRFAGREISV 135
+N F GR I V
Sbjct: 133 LNESVFKGRNIKV 145
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 125 (49.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 38 (18.4 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 233 YSRRSYSPGYDDSA 246
YS RS GYD S+
Sbjct: 142 YSSRSQGGGYDRSS 155
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + + L F FG + +V + KD T RGF F+ F +P A+ A
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
MNG+ GR+I V A +S +
Sbjct: 66 AMNGESLDGRQIRVDHAGKSAR 87
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 140 (54.3 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G + VRN+ + E+L F +FG + ++++P DY + + +G AF+ ++ P A +A +
Sbjct: 361 GRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALN 420
Query: 122 HMNGKRFAGREISVV 136
M+GK F GR I V+
Sbjct: 421 DMDGKVFQGRLIHVL 435
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
++++N+P + +E+R F +G ++ V +PK G RGF FV+F+ EA A +
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGH-RGFGFVEFLTEEEAKNAMEAL 855
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQR 151
F GR + V+ AE K +E+R++
Sbjct: 856 GNSHFYGRHL-VLQYAEQDKNIDELREK 882
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V N+P EE+ F G V +V + D TG PRGFAFV+F + A A
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 123 MNGKRFAGREISV 135
+NG F GR + V
Sbjct: 67 LNGVAFNGRNLRV 79
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 125 (49.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + ++ L KD T + RGFAFV F P +A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
Score = 49 (22.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 199 PVPRQHEDYSISPRRR--HIEHPGSPRGPPQERGA-EYSR--RSYS-PGYDDSADRRNPN 252
P+P + + Y +SPR + S R R +Y+ R Y+ Y S+ R +
Sbjct: 195 PLPSRRDVY-LSPRDDGYSTKDSYSSRDYLSSRDTRDYAPPPRDYTYRDYSHSSSRDDYP 253
Query: 253 GNGYGEKSGY 262
GYG++ GY
Sbjct: 254 SRGYGDRDGY 263
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 222 PRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
P PP+ RG R S G R P+ GY + GY
Sbjct: 96 PPPPPRSRGPPRGLRGGSGG-----TRGPPSRGGYMDDGGY 131
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYDDSADRRN-PNGNGYGEKSG 261
G RGPP RG YS ++ S+ R P G +SG
Sbjct: 114 GGTRGPPS-RGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 155
Score = 46 (21.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSP-GYDDSADRRN 250
PV R + Y PRR + P++ G YS + SYS Y S D R+
Sbjct: 179 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYLSSRDTRD 230
Score = 43 (20.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS 260
R++ D+ S R E G+ P RG S S YDD + R+ G G G +
Sbjct: 267 REYSDHPSGGSYRDSYESYGNSCSAPPTRGPPPSYGG-SSRYDDYSSSRD--GYG-GSRD 322
Query: 261 GYEETQA 267
Y +++
Sbjct: 323 SYSSSRS 329
Score = 40 (19.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 16/49 (32%), Positives = 17/49 (34%)
Query: 199 PVPRQH--EDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDS 245
P PR + DYS S R G R EYS Y DS
Sbjct: 233 PPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRDREYSDHPSGGSYRDS 281
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 223 RGPPQERGAEYSRRSYSPG 241
RGPP G +RS G
Sbjct: 148 RGPPPRSGGPPPKRSTPSG 166
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 57 KEQNHG-SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYE 115
+E+ G S+ V N+ PE+L F GV+ V + D ++G P+G+A+++F
Sbjct: 22 QEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTES 81
Query: 116 AAEAQHHMNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
+A ++GK F GRE+ V A+ P R R R
Sbjct: 82 VQKAIDELHGKEFRGRELRVT--AKRTNLPGFRRGRGR 117
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 56 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 115
Query: 120 QHHMNGKRFAGREI 133
HM G+ GR+I
Sbjct: 116 IVHMGGQWLGGRQI 129
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISV 135
MNGK GR+I V
Sbjct: 64 MMAMNGKSVDGRQIRV 79
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + + L F FG + +V + KD T RGF F+ F +P A++
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
MNG+ GR+I V A +S +
Sbjct: 66 AMNGESLDGRQIRVDHAGKSAR 87
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 125 (49.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
Score = 44 (20.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 233 YSRRSYSPGYDD--SADRRNPNGNGYGEKSGYEETQAHW 269
YS RS S GY D S + + YG KS E W
Sbjct: 142 YSSRSQSGGYSDRSSGGSYRDSYDSYG-KSHSEGATLLW 179
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 125 (49.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 124 (48.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNGK G+ I V E K+P
Sbjct: 62 KNAAKDMNGKSLHGKAIKV----EQAKKP 86
Score = 52 (23.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 342 RDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 398
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 124 (48.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNGK G+ I V E K+P
Sbjct: 62 KNAAKDMNGKSLHGKAIKV----EQAKKP 86
Score = 52 (23.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 342 RDHSEHLSGSSYRDALQRYGTAHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 398
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/76 (39%), Positives = 39/76 (51%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V N P ++L F + G V +V + D TG PRGFAFV+F + A A
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 123 MNGKRFAGREISVVLA 138
NG F GR + V LA
Sbjct: 65 FNGVDFNGRALRVNLA 80
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/76 (39%), Positives = 39/76 (51%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V N P ++L F + G V +V + D TG PRGFAFV+F + A A
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 123 MNGKRFAGREISVVLA 138
NG F GR + V LA
Sbjct: 65 FNGVDFNGRALRVNLA 80
>FB|FBgn0035526 [details] [associations]
symbol:CG1316 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P11940 eggNOG:NOG145324
OMA:DIWVVKD GeneTree:ENSGT00680000100059 EMBL:BT001728
RefSeq:NP_647887.1 UniGene:Dm.14909 SMR:Q9VZE4 IntAct:Q9VZE4
MINT:MINT-906283 EnsemblMetazoa:FBtr0073233 GeneID:38526
KEGG:dme:Dmel_CG1316 UCSC:CG1316-RA FlyBase:FBgn0035526
InParanoid:Q9VZE4 OrthoDB:EOG4KKWJ8 GenomeRNAi:38526 NextBio:809099
Uniprot:Q9VZE4
Length = 470
Score = 120 (47.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 76 EELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA--GREI 133
E+ R F +G + D+++ KD +T E +G A+V+F +AA+AQ MNGK R +
Sbjct: 41 EDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTL 100
Query: 134 SVVLAA 139
V++AA
Sbjct: 101 KVLVAA 106
Score = 57 (25.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 222 PRGPPQERGAEYSRRSY-SPGYDDSADRRNPNGNGYGEKSG 261
P+G + + +Y R S +P Y S R N N NG G SG
Sbjct: 194 PKGSTRTQRDQYGRPSEDNPLYSSSG-RGNSNFNGGGSSSG 233
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 138 (53.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
K++ +G L++RN+ C +EL+ F +FG V + +P G+ +GFAFVQF EA
Sbjct: 119 KKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKP-DGKKKGFAFVQFKCVSEA 177
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKR--PEEMRQRHR 153
+A+ MN K R + V + + PE+ + H+
Sbjct: 178 EKARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHK 216
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L+ F FG V + +P G+ RGFAFV F EA +A M
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKP-DGKKRGFAFVLFKRMPEAGKALTAM 296
Query: 124 NGKRFAGREISV 135
NGK+ R+++V
Sbjct: 297 NGKKIKDRQVAV 308
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 124 (48.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
+L V I D +LR FE +G ++ +Y+ + TG+PRG+AF+++ + A H
Sbjct: 104 TLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKH 163
Query: 123 MNGKRFAGREISV 135
+GK+ GR + V
Sbjct: 164 ADGKKIDGRRVLV 176
Score = 51 (23.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 212 RRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYE 263
R R E G+ G +ER + R S DR+ G G + G E
Sbjct: 284 RERERERGGAGAGESRERSRDRDRDRDRKRRSRSRDRKRDRERGKGAEGGEE 335
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 121 (47.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISV 135
MNGK GR+I V
Sbjct: 64 MMAMNGKSVDGRQIRV 79
Score = 44 (20.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 233 YSRRSYSPGYDD--SADRRNPNGNGYGEKSGYEETQAHW 269
YS RS S GY D S + + YG KS E W
Sbjct: 108 YSSRSQSGGYSDRSSGGSYRDSYDSYG-KSHSEGATLLW 145
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 117 (46.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGK 126
MNGK
Sbjct: 68 DMNGK 72
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 117 (46.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 10 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 69
Query: 122 HMNGK 126
MNGK
Sbjct: 70 DMNGK 74
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 117 (46.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 10 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 69
Query: 122 HMNGK 126
MNGK
Sbjct: 70 DMNGK 74
>UNIPROTKB|H3BR57 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000564760
Bgee:H3BR57 Uniprot:H3BR57
Length = 112
Score = 91 (37.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 82 FERFGVVRDVYLPKD-YYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140
F +G ++ + +P + + +G+A+V+F +P EA +A HM+G + G+EI+
Sbjct: 4 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 63
Query: 141 SRKRPEEMR 149
RP R
Sbjct: 64 PWPRPPPRR 72
Score = 43 (20.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGS-PRGPPQERGAEYSRRSYSP 240
P PR+ SP RR + P R PP+ R S R SP
Sbjct: 68 PPPRR-----FSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 105
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 133 (51.9 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + +++RA F FG + D + KD TG+ +G+ F+ F++ ++A A
Sbjct: 95 NHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESA 154
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPE 146
MNG+ GR+I A P+
Sbjct: 155 IQQMNGQWLGGRQIRTNWATRKPSAPK 181
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 135 (52.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 36/87 (41%), Positives = 46/87 (52%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L V NI +L++ FE FG + V L KD TG RG+ FVQF DP +A EA M
Sbjct: 275 LYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKM 333
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQ 150
NG GR I V L + + PE ++
Sbjct: 334 NGYDLGGRAIRVGLGND-KFTPENTQR 359
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 115 (45.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L V I D + LRA F FG + DV LP D+ T + +GF F+ F P +AA+A +M
Sbjct: 17 LYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDAADALDNM 76
Query: 124 NGKRFAGREISVVLA 138
+ GR I +A
Sbjct: 77 HESEIFGRVIKCSIA 91
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 109 (43.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 28/67 (41%), Positives = 36/67 (53%)
Query: 76 EELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135
E+L+ F +FG V D + D +G RGF FV F D +A MNGK GR I+V
Sbjct: 20 EDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
Query: 136 VLAAESR 142
A+SR
Sbjct: 80 N-EAQSR 85
Score = 44 (20.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 12/33 (36%), Positives = 12/33 (36%)
Query: 230 GAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
G Y RRS G R G G E GY
Sbjct: 122 GGGYERRSGGYGSGGGGGGRGYGGGGRREGGGY 154
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 135 (52.6 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L+A F +G V +V +PK G+ RGFAFVQF + EA +A
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKP-DGKMRGFAFVQFKNLLEAGKALKGA 174
Query: 124 NGKRFAGREISVVLAAESRK 143
N K GR ++V A K
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 135 (52.6 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L+ F ++G V +V +P+ G+ RGFAFVQF + EA +A M
Sbjct: 116 LIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKP-DGKMRGFAFVQFKNLLEAGKALKSM 174
Query: 124 NGKRFAGREISVVLAAESRK 143
N K GR ++V A K
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194
>POMBASE|SPBC18H10.03 [details] [associations]
symbol:tif35 "translation initiation factor eIF3g"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006413 "translational initiation"
evidence=ISS] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IDA] [GO:0071540 "eukaryotic translation initiation factor
3 complex, eIF3e" evidence=IDA] [GO:0071541 "eukaryotic translation
initiation factor 3 complex, eIF3m" evidence=IDA] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC18H10.03 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0003723 GO:GO:0003743 eggNOG:COG0724 GO:GO:0002183 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
GO:GO:0016282 GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000239560
OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AB011823 EMBL:D89144 PIR:T39767
RefSeq:NP_595727.1 ProteinModelPortal:P78795 STRING:P78795
EnsemblFungi:SPBC18H10.03.1 GeneID:2540819 KEGG:spo:SPBC18H10.03
NextBio:20801936 Uniprot:P78795
Length = 282
Score = 130 (50.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ + +L V N+ D R EELR F RFG ++ VYL KD TG +GFAFV + D A
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256
Query: 117 AEAQHHMNG 125
+A+ ++G
Sbjct: 257 IKARDRLDG 265
>UNIPROTKB|H7BXF3 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10781 ChiTaRS:TRA2B EMBL:AC009247
ProteinModelPortal:H7BXF3 PRIDE:H7BXF3 Ensembl:ENST00000259043
Uniprot:H7BXF3
Length = 127
Score = 83 (34.3 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 88 VRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAESRKRP 145
+ DV + D + RGFAFV F + +A EA+ NG GR I V + KRP
Sbjct: 3 IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT--KRP 58
Score = 71 (30.1 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDD------SADRRNPNGNGY 256
D+SI+ +R H PG G P R +Y R Y GYDD S RR+P+ Y
Sbjct: 51 DFSIT-KRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRRRSPSP--Y 107
Query: 257 GEKSGY 262
+ GY
Sbjct: 108 YSRGGY 113
Score = 45 (20.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 16/52 (30%), Positives = 17/52 (32%)
Query: 210 SPRRRHIEHPGSPRGPPQER--GAEYSRRSYSPGYDDSADRRNPNGNGYGEK 259
S RRR G RG Y RRS SP Y R Y +
Sbjct: 74 SSRRRDYYDRGYDRGYDDRDYYSRSYRRRSPSPYYSRGGYRSRSRSRSYSPR 125
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 134 (52.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L+ F +FG V +V +P+ G+ RGF FVQF + EA +A M
Sbjct: 116 LIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP-DGKMRGFGFVQFKNLLEAGKALKGM 174
Query: 124 NGKRFAGREISVVLAAESRK 143
N K GR ++V A K
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 126 (49.4 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ Q+H + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A M G+ GR+I A +RK P
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA--TRKPP 187
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 118 (46.6 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A MNG G+ I V E K+P
Sbjct: 62 KNAAKDMNGTSLHGKAIKV----EQAKKP 86
Score = 52 (23.4 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPNGNGYGE 258
P+ ++ E+Y + PRR I + R + G + ++ P ++ D P+ GY
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNH-PSCQETRDYAPPS-RGYAY 240
Query: 259 K-SGYEETQAH 268
+ +G+ H
Sbjct: 241 RDNGHSNRDEH 251
Score = 47 (21.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 202 RQHEDY-SISPRRRHIEHPGSPRGPPQERGAEYSRR-SYSPGYDDSADRRNPNGNGY 256
R H ++ S S R ++ G+ G P RG S S Y ++ DR + Y
Sbjct: 342 RDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESY 398
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 134 (52.2 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L VRN+ + + EL F FG + ++++ D +GFA+VQ+ DP A EA ++
Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356
Query: 124 NGKRFAGREISVVLAAESR 142
+GK F GR + ++ A++ +
Sbjct: 357 DGKIFQGRLLHILPASQKK 375
Score = 113 (44.8 bits), Expect = 0.00061, P = 0.00061
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
++++N+P +++R+ F +G +R V +PK + RGF F FV EA A +
Sbjct: 699 IIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKF-DRSARGFGFADFVSAREAENAMDAL 757
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQR 151
GR + + A E EE QR
Sbjct: 758 KNTHLLGRRLVLEFANEEAIDAEEEIQR 785
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 134 (52.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L +RN+ C ++L++ F FG + V++P D T P+GFA++ F D +A A +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 124 NGKRFAGREISVVLAAESR 142
+ K F GR + V L A++R
Sbjct: 385 DAKPFQGRLLHV-LPAKAR 402
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAA 117
E + +L+V +P + EEL++ F G + L +D TG+ G+ FV ++DP +A
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 118 EAQHHMNGKRFAGREISVVLAAES 141
+A + +NG R + I V A S
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPS 118
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 111 (44.1 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 78 LRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137
LR F R+G + + + KD T RGF FV+F EA A MN + F GR I V
Sbjct: 18 LREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDK 77
Query: 138 AAE 140
A+E
Sbjct: 78 ASE 80
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 124 (48.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/96 (32%), Positives = 51/96 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+E + S+ V N+ C PEE++ F+ G V V + D + G+P+GFA+V+FV+ EA
Sbjct: 84 EEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVE-VEA 141
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
+ +N GR++ V + R M+Q H
Sbjct: 142 VQEALQLNESELHGRQLKV---SPKRTNVPGMKQYH 174
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 110 (43.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L VRN+P + EE+ F ++G +R + + D T +G AFV + D Y+A A H+
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYDAKNAVDHL 77
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQR 151
+G A R + +VL + K ++ Q+
Sbjct: 78 SGFNVANRYL-IVLYYQHAKMSKKFDQK 104
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 132 (51.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
K + G L +RNI + E+ R+ F ++G + +V++ D TG+ +GF +VQF+ +A
Sbjct: 305 KIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDA 364
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRK 143
A ++ + F GR + + L A+ +K
Sbjct: 365 TRAYRSLDKQIFQGRLLHI-LPADKKK 390
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 119 (46.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAA 117
E + S+ V N+ EEL A F G V V + D YTG P+GFA+++F D E+
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDK-ESV 217
Query: 118 EAQHHMNGKRFAGREISVV 136
++ F GR+I VV
Sbjct: 218 RTSLALDESLFRGRQIKVV 236
Score = 40 (19.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 220 GSPRGPPQERGAEYSRRS-YSPGY 242
G PR + R + YS RS + GY
Sbjct: 251 GFPRARYRARASSYSSRSRFYSGY 274
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L VRN+ E+L F +G + +++ P D T +P+GFAFV F+ P A +A
Sbjct: 400 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 459
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G+ F GR + V+ + ++ +E
Sbjct: 460 EVDGQVFQGRMLHVLPSTIKKEASQE 485
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYY-TGEPRGFAFVQFVDPYE 115
K+Q +LVRNIP E+R F FG ++ V LPK TG RGF FV F+ +
Sbjct: 819 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 878
Query: 116 AAEAQHHM-NGKRFAGREISVVLAAESRKRPEEMRQR 151
A +A + + + GR + V+ A+S + +R++
Sbjct: 879 AKKAFNALCHSTHLYGRRL-VLEWADSEVTVQTLRRK 914
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 128 (50.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + +++RA F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 113 NHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENA 172
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMR 149
HM G+ GR+I A P+ ++
Sbjct: 173 IVHMGGQWLGGRQIRTNWATRKPPAPKSVQ 202
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 117 (46.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 30/88 (34%), Positives = 44/88 (50%)
Query: 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAA 117
E + S+ V N+ EEL A F G V V + D +TG P+GFA+++F D E+
Sbjct: 94 EADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADK-ESV 152
Query: 118 EAQHHMNGKRFAGREISVVLAAESRKRP 145
++ F GR+I V A+ RP
Sbjct: 153 RTAMALDESLFRGRQIKV--GAKRTNRP 178
Score = 42 (19.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 220 GSPRGPPQERGAEYSRRS-YSPGY 242
G PR + RG +S R+ Y GY
Sbjct: 186 GFPRARFRSRGGNFSSRARYYSGY 209
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 130 (50.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
++ V+N+ +D + L+ F +FG + V + +D G+ RGF F+ F EA +A H
Sbjct: 192 NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDH 250
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
MNGK +G+ + V A + +R E+++R
Sbjct: 251 MNGKEVSGQLLYVGRAQKRAERQNELKRR 279
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 125 (49.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
+L V N+ ++ F FG V V + KD +T + RG AFV +V +AA+A
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQR 151
M+ K GR+++V +AA++ + E +++R
Sbjct: 118 MDAKILNGRKLTVSIAADNGRASEFIKKR 146
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L V + + + L F FG + +V + KD+ T +GF F+ F +P A+ A
Sbjct: 6 GKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMR 65
Query: 122 HMNGKRFAGREISVVLAAESRK 143
NG+ GR+I V A +S +
Sbjct: 66 ATNGESLDGRQIHVDHAGKSAR 87
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 112 (44.5 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 35/90 (38%), Positives = 41/90 (45%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L VRN+ E L F FG + V KDY AFV F D A +A M
Sbjct: 183 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDY--------AFVHFEDRGAAVKAMDEM 234
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQRHR 153
NGK G EI +VLA K+ +E RQ R
Sbjct: 235 NGKEIEGEEIEIVLAKPPDKKRKE-RQAAR 263
Score = 56 (24.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 211 PR-RRHIEHPGSPRGPPQ-ERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS--GYEE 264
PR R G+P GPP+ RG G R N GN G++ GY +
Sbjct: 363 PRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 420
Score = 41 (19.5 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYD--DSADRRNPNGNGYGEK 259
GS RG RG + + GY+ DS R+ N +G +
Sbjct: 397 GS-RGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQ 437
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 122 (48.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L + + L + L+A F ++G + V+L KD T + RGFAFV F P +A A M
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 124 NGKRFAGREISV 135
NGK G+ I V
Sbjct: 70 NGKYLDGKAIMV 81
Score = 51 (23.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 226 PQERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGYEE 264
P ++S ++YS G S++ + + YGE+ YEE
Sbjct: 354 PDAYSRDHSPKAYSGGRSSSSNGYS-RSDRYGEEGCYEE 391
Score = 47 (21.6 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 237 SYSPGYDDSADRRNPNGNGYGEKSGYEETQAH 268
+YS G+D S+ N YG YEE + H
Sbjct: 688 AYSGGHDSSSQ-----SNRYGGGGRYEEYRGH 714
Score = 45 (20.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 228 ERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
E G R SP D + RN + N YG+ Y
Sbjct: 385 EEGCYEEYRGRSP--DAHSGGRNSSSNSYGQSHHY 417
Score = 44 (20.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 234 SRRSYSPGYDDSA--DRRNPNGNGYGEKSGYEETQAH 268
S +YS G+D+S+ DR YG YEE + H
Sbjct: 487 SPEAYSGGHDNSSWSDR-------YGVGGHYEENRGH 516
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 234 SRRSYSPGYDDSADRRNPNGNG-YGEKSG 261
S +YS G+D S+ G G Y E G
Sbjct: 568 SADAYSGGHDSSSQSNRYGGGGCYEEYRG 596
Score = 40 (19.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 234 SRRSYSPGYDDSA-DRRNPNGNGYGEKSG 261
S +YS G+D S+ R G Y E G
Sbjct: 607 SPNAYSGGHDSSSWSHRYGGGGRYEEYRG 635
Score = 39 (18.8 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 237 SYSPGYDDSADRRNPNGNG-YGEKSG 261
+YS G+D S+ G G Y E G
Sbjct: 759 AYSGGHDSSSRSHRYGGGGRYEEYRG 784
Score = 38 (18.4 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 237 SYSPGYDDSADRRNPNGNGYGEKSGYEE 264
+YS G+D S N YG YEE
Sbjct: 649 AYSGGHDSSGQ-----SNCYGGGGRYEE 671
Score = 36 (17.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 237 SYSPGYDDSADRRNPNGNG 255
+YS G+D S+ + G G
Sbjct: 727 TYSRGHDSSSQSDHYGGGG 745
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 127 (49.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
K +N + V IP D +L A F ++G + DV L +D TG+ +GFAF+ + D
Sbjct: 31 KYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRST 90
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
A ++NG GR I V +K EE + R
Sbjct: 91 ILAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRR 127
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 109 (43.4 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 58 EQNH-GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
E +H G L + + + + L+A F + G + +V L KD T + RGFAF+ F +P +A
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADA 61
Query: 117 AEAQHHMNGK 126
A MNGK
Sbjct: 62 KNAAKDMNGK 71
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 109 (43.4 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
SL + N+ E L F FG V+R V L KD+ GE RGFAF++F A A
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSV-LAKDF-RGESRGFAFIEFESADSAGRAML 75
Query: 122 HMNGKRFAGREISVV 136
HM+G R G++I V
Sbjct: 76 HMDG-RLIGQKILCV 89
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 130 (50.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ ++NI + EE R FE+FG + L +D G+ RGF FV F +E+A+A
Sbjct: 221 NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNF-STHESAQA 278
Query: 120 Q-HHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
MN K +++ V A + +R EE+R+++
Sbjct: 279 AVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
>DICTYBASE|DDB_G0286297 [details] [associations]
symbol:DDB_G0286297 "putative splicing factor 3B 14
kDa subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286297 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000085 eggNOG:COG0724
KO:K12833 OMA:YQSTKAF RefSeq:XP_637842.1 ProteinModelPortal:Q54LY9
SMR:Q54LY9 STRING:Q54LY9 EnsemblProtists:DDB0233775 GeneID:8625556
KEGG:ddi:DDB_G0286297 InParanoid:Q54LY9 Uniprot:Q54LY9
Length = 117
Score = 108 (43.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L V+N+P EEL F +G +R + L T E G AFV + D ++A A H+
Sbjct: 18 LYVKNLPFKISSEELYGIFSNYGAIRQIRLGN---TTETMGTAFVVYEDIFDARNACEHL 74
Query: 124 NGKRFAGREISVVLAAESRKRPEEM 148
+G R + VVL + +K+ ++M
Sbjct: 75 SGYNVNNRYL-VVLYYQQQKQQKKM 98
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 108 (43.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/72 (37%), Positives = 35/72 (48%)
Query: 66 VRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125
V N+ + LR F +G V D + +D YT RGF FV + EA A M+G
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
Query: 126 KRFAGREISVVL 137
K GR +SV L
Sbjct: 67 KELNGRRVSVKL 78
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 122 (48.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+E + S+ V N+ C PEE++ F+ G V V + D + G+P+GFA+V+FV+ EA
Sbjct: 87 EEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVE-VEA 144
Query: 117 AEAQHHMNGKRFAGREISVV 136
+ +N GR++ V+
Sbjct: 145 VQEALQLNESELHGRQLKVL 164
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 124 (48.7 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A A
Sbjct: 89 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 148
Query: 120 QHHMNGKRFAGREISVVLAAESRKRP 145
M G+ GR+I A +RK P
Sbjct: 149 IQQMGGQWLGGRQIRTNWA--TRKPP 172
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 126 (49.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 154
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
HM G+ GR+I A P+ ++ +
Sbjct: 155 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 124 (48.7 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A A
Sbjct: 93 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 152
Query: 120 QHHMNGKRFAGREISVVLAAESRKRP 145
M G+ GR+I A +RK P
Sbjct: 153 IQQMGGQWLGGRQIRTNWA--TRKPP 176
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 126 (49.4 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 154
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
HM G+ GR+I A P+ ++ +
Sbjct: 155 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 126 (49.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ Q+H + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A
Sbjct: 97 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 156
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A M G+ GR+I A +RK P
Sbjct: 157 ENAIQQMGGQWLGGRQIRTNWA--TRKPP 183
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 126 (49.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ Q+H + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A M G+ GR+I A +RK P
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA--TRKPP 187
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 125 (49.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
++ V+N+P+D + L+ F +FG + V + +D +G R F FV F EA +A H
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQ-RHRF 154
MNGK +GR ++ A ++KR E + + RF
Sbjct: 251 MNGKEVSGR---LLYAGRAQKRVERQNELKRRF 280
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 126 (49.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ Q+H + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A M G+ GR+I A +RK P
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA--TRKPP 187
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 126 (49.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ Q+H + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A M G+ GR+I A +RK P
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA--TRKPP 187
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 126 (49.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ Q+H + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A M G+ GR+I A +RK P
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA--TRKPP 187
>UNIPROTKB|H3BPG5 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471112 EMBL:AC009065 UniGene:Hs.355643 UniGene:Hs.507343
UniGene:Hs.733012 HGNC:HGNC:10080 ChiTaRS:RNPS1 SMR:H3BPG5
Ensembl:ENST00000561718 Ensembl:ENST00000566397 Uniprot:H3BPG5
Length = 128
Score = 91 (37.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 82 FERFGVVRDVYLPKD-YYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140
F +G ++ + +P + + +G+A+V+F +P EA +A HM+G + G+EI+
Sbjct: 4 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 63
Query: 141 SRKRPEEMR 149
RP R
Sbjct: 64 PWPRPPPRR 72
Score = 43 (20.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 199 PVPRQHEDYSISPRRRHIEHPGS-PRGPPQERGAEYSRRSYSP 240
P PR+ SP RR + P R PP+ R S R SP
Sbjct: 68 PPPRR-----FSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSP 105
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 126 (49.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 111 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 170
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
HM G+ GR+I A P+ ++ +
Sbjct: 171 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 203
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 126 (49.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
HM G+ GR+I A P+ ++ +
Sbjct: 172 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 204
>WB|WBGene00013293 [details] [associations]
symbol:Y57G11A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z99279
RefSeq:NP_502757.2 ProteinModelPortal:O18219 SMR:O18219
EnsemblMetazoa:Y57G11A.5 GeneID:190364 KEGG:cel:CELE_Y57G11A.5
UCSC:Y57G11A.5 CTD:190364 WormBase:Y57G11A.5 eggNOG:NOG301947
HOGENOM:HOG000020379 InParanoid:O18219 OMA:KKICDLE Uniprot:O18219
Length = 110
Score = 107 (42.7 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 66 VRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125
V N+P D +E+ A F G ++ +++ K P GFAFV F A +A ++NG
Sbjct: 21 VGNMPFDATEKEIEAVFSVMGPIKSIWMAK-----RPPGFAFVTFKRTVHAFDAVKYLNG 75
Query: 126 KRFAGREISVVLAAESRKRPEEMRQR 151
K+ E V + K E++R+R
Sbjct: 76 KKICDLEAKVEMCEVDFK--EDLRRR 99
>WB|WBGene00016808 [details] [associations]
symbol:C50D2.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003723 EMBL:FO080633 eggNOG:COG0724
HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF RefSeq:NP_493659.3
ProteinModelPortal:Q8ITY4 SMR:Q8ITY4 STRING:Q8ITY4 PaxDb:Q8ITY4
EnsemblMetazoa:C50D2.5 GeneID:173394 KEGG:cel:CELE_C50D2.5
UCSC:C50D2.5 CTD:173394 WormBase:C50D2.5
GeneTree:ENSGT00390000005908 InParanoid:Q8ITY4 NextBio:879467
Uniprot:Q8ITY4
Length = 138
Score = 107 (42.7 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L ++N+P EE+ F +FG VR + + T E RG AFV + D ++A A H+
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGN---TAETRGTAFVVYEDIFDAKTACEHL 77
Query: 124 NGKRFAGREISVVLAAESRKRPEEM 148
+G + R + VVL ++ K + M
Sbjct: 78 SGYNVSNRYL-VVLYYQATKAWKRM 101
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 126 (49.4 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
HM G+ GR+I A P+ ++ +
Sbjct: 172 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 204
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 126 (49.4 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH 152
HM G+ GR+I A P+ ++ +
Sbjct: 172 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 204
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 126 (49.4 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
+ Q+H + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A
Sbjct: 101 RSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 160
Query: 117 AEAQHHMNGKRFAGREISVVLAAESRKRP 145
A M G+ GR+I A +RK P
Sbjct: 161 ENAIQQMGGQWLGGRQIRTNWA--TRKPP 187
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 112 (44.5 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 35/90 (38%), Positives = 41/90 (45%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L VRN+ E L F FG + V KDY AFV F D A +A M
Sbjct: 305 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDY--------AFVHFEDRGAAVKAMDEM 356
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQRHR 153
NGK G EI +VLA K+ +E RQ R
Sbjct: 357 NGKEIEGEEIEIVLAKPPDKKRKE-RQAAR 385
Score = 56 (24.8 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 211 PR-RRHIEHPGSPRGPPQ-ERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS--GYEE 264
PR R G+P GPP+ RG G R N GN G++ GY +
Sbjct: 485 PRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 542
Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYD--DSADRRNPNGNGYGEK 259
GS RG RG + + GY+ DS R+ N +G +
Sbjct: 519 GS-RGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQ 559
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 124 (48.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
+L V N+ +ELR FERFG V V+L KD TG +GFAF+ F D +A +A +
Sbjct: 224 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNK 283
Query: 123 MNGKRF 128
M+G F
Sbjct: 284 MDGWGF 289
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 115 (45.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L + + + + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDA 62
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 63 MMAMNGKSVDGRQIRVDQAGKS 84
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 105 (42.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V N+ PEEL++ F G V V + D +TG P+GFA+++F +P A
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL- 114
Query: 123 MNGKRFAGREISV 135
+NG R + V
Sbjct: 115 LNGSMLHERPLKV 127
Score = 40 (19.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 204 HE-DYSISPRRRHIEHPGSPRGPPQERG 230
HE ++P+R ++ PG RG + RG
Sbjct: 121 HERPLKVTPKRTNV--PGMSRGRGRGRG 146
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 125 (49.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQ 150
HM G+ GR+I A P+ ++
Sbjct: 172 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 119 (46.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAESRKRP 145
MNGK E +V+ A P
Sbjct: 68 DMNGKLLYHVE-EIVMEAHLEGNP 90
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 125 (49.1 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQ 150
HM G+ GR+I A P+ ++
Sbjct: 172 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 112 (44.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 35/90 (38%), Positives = 41/90 (45%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L VRN+ E L F FG + V KDY AFV F D A +A M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDY--------AFVHFEDRGAAVKAMDEM 394
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQRHR 153
NGK G EI +VLA K+ +E RQ R
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKE-RQAAR 423
Score = 56 (24.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 211 PR-RRHIEHPGSPRGPPQ-ERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS--GYEE 264
PR R G+P GPP+ RG G R N GN G++ GY +
Sbjct: 523 PRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 580
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYD--DSADRRNPNGNGYGEK 259
GS RG RG + + GY+ DS R+ N +G +
Sbjct: 557 GS-RGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQ 597
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 112 (44.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 35/90 (38%), Positives = 41/90 (45%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L VRN+ E L F FG + V KDY AFV F D A +A M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDY--------AFVHFEDRGAAVKAMDEM 394
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQRHR 153
NGK G EI +VLA K+ +E RQ R
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKE-RQAAR 423
Score = 56 (24.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 211 PR-RRHIEHPGSPRGPPQ-ERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS--GYEE 264
PR R G+P GPP+ RG G R N GN G++ GY +
Sbjct: 523 PRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 580
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYD--DSADRRNPNGNGYGEK 259
GS RG RG + + GY+ DS R+ N +G +
Sbjct: 557 GS-RGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQ 597
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 112 (44.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 35/90 (38%), Positives = 41/90 (45%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L VRN+ E L F FG + V KDY AFV F D A +A M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKDY--------AFVHFEDRGAAVKAMDEM 394
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQRHR 153
NGK G EI +VLA K+ +E RQ R
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKE-RQAAR 423
Score = 56 (24.8 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 211 PR-RRHIEHPGSPRGPPQ-ERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKS--GYEE 264
PR R G+P GPP+ RG G R N GN G++ GY +
Sbjct: 523 PRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 580
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 220 GSPRGPPQERGAEYSRRSYSPGYD--DSADRRNPNGNGYGEK 259
GS RG RG + + GY+ DS R+ N +G +
Sbjct: 557 GS-RGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQ 597
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 129 (50.5 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L +RN+P + ++L+ F+++G V +V + D TG +GFA V+FV P A A
Sbjct: 279 GRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYS 338
Query: 122 HMNGKRFAGREISVVLAAESR-KRPEE 147
++G F GR + ++ E R K EE
Sbjct: 339 ALDGYVFKGRMMHILPGDEKRTKEGEE 365
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 33/98 (33%), Positives = 52/98 (53%)
Query: 57 KEQNHGS-LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDY-YTGEPRGFAFVQFVDPY 114
KEQ + LLVRN+P + +E+ FE FG V+ + +PK + RGF FV F+
Sbjct: 742 KEQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISAD 801
Query: 115 EAAEAQHHM-NGKRFAGREISVVLAAESRKRPEEMRQR 151
EA A + + GR + V+ A+ + EE+R++
Sbjct: 802 EAHRAFDSLVHSTHLYGRRL-VLEWAKDDETVEELREK 838
Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L+V+N+P C ++LR FE++G + D L K G+ RGFAFV F+D A+ A
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASL-KYTKEGKFRGFAFVGFLDEGSASNALAKS 63
Query: 124 NGKRFAGREISV 135
N F ++++V
Sbjct: 64 NQTFFNSKKLTV 75
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 128 (50.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L++ F +G V +V +P+ G+ RGFAF+QF + EA +A
Sbjct: 116 LIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKP-DGKMRGFAFIQFKNLLEAGKALKGA 174
Query: 124 NGKRFAGREISVVLAAESRK 143
N K GR ++V A K
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 129 (50.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEP--RGFAFVQFVDPY 114
K+Q +LVRNIP + E+R F+ FG +R + +PK TGE RGF FV ++
Sbjct: 780 KKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKA 839
Query: 115 EAAEAQHHMNGK-RFAGREISVVLAA-ESRKRPEEMRQR 151
EA A ++ GR + + +A + + EE+R+R
Sbjct: 840 EAKRAFDALSASTHLYGRRLVLEWSANDDNQDVEELRKR 878
Score = 126 (49.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G + RN+ E+LR FE+FG V +V LP D T + +GF V ++ P A +A +
Sbjct: 364 GRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFN 423
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G F GR + ++ + + K P+E
Sbjct: 424 TLDGTDFHGRLLHLLPSKDIEKNPKE 449
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 106 (42.4 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
+++ NI + R + ++ FERFG +++++L D TG +G+AF+++ + +A A M
Sbjct: 25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84
Query: 124 NGKRFAGREISV 135
+G +EI V
Sbjct: 85 DGTMLLNQEIHV 96
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 106 (42.4 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAE 118
+ H L + +P C EEL + G V+D+ L + G+P+G A+V++ + +A++
Sbjct: 38 EKH-KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQ 95
Query: 119 AQHHMNGKRFAGREISVVLA-AESRKRPEEMRQR 151
A M+G I V ++ RK PE+ R
Sbjct: 96 AVMKMDGMTIKENIIKVAISNPPQRKVPEKPETR 129
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 106 (42.4 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
+++ NI + R + ++ FERFG +++++L D TG +G+AF+++ + +A A M
Sbjct: 25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84
Query: 124 NGKRFAGREISV 135
+G +EI V
Sbjct: 85 DGTMLLNQEIHV 96
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 125 (49.1 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQ 150
HM G+ GR+I A P+ ++
Sbjct: 172 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 125 (49.1 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E++++ F FG + D + KD TG+ +G+ FV F + +A A
Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQ 150
HM G+ GR+I A P+ ++
Sbjct: 172 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 116 (45.9 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAA 117
E + S+ V N+ EEL A F G V V + D +TG P+GFA+++F D E+
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDK-ESV 217
Query: 118 EAQHHMNGKRFAGREISVV 136
++ F GR+I VV
Sbjct: 218 RTSLALDESLFRGRQIKVV 236
Score = 40 (19.1 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 220 GSPRGPPQERGAEYSRRS-YSPGY 242
G PR + R + YS RS + GY
Sbjct: 251 GFPRARYRARASSYSSRSRFYSGY 274
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 128 (50.1 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L++ F +G V +V +P+ G+ RGFAF+QF + EA +A
Sbjct: 116 LIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKP-DGKMRGFAFIQFKNLLEAGKALKGA 174
Query: 124 NGKRFAGREISVVLAAESRK 143
N K GR ++V A K
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 113 (44.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 78 LRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137
L F FG + D+ +P DY + RGFAF+++ +AA A +MN GR I V L
Sbjct: 22 LNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNL 81
Query: 138 AAESRKRPEEMR 149
A R + + +
Sbjct: 82 AKPVRVKEDSFK 93
Score = 44 (20.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 217 EHPGSPRGPPQERGAE-YSRRSYSPGYDDSADRRNP 251
+H G+ P E AE S P + A++RNP
Sbjct: 104 KHAGATLQPEGEPEAEKVETPSTGPAVIEKAEKRNP 139
Score = 35 (17.4 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 214 RHIEHPGSPRGPPQERGAEYS 234
R +E GS G P ++ YS
Sbjct: 275 RKMERCGSKSGTPSQKIVIYS 295
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 104 (41.7 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 65 LVRNIPLDCR-----------PEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDP 113
L R+ PLDC+ EL F +G +R V++ ++ P GFAFV+F DP
Sbjct: 6 LTRDCPLDCKVYVGNLGNSGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDP 60
Query: 114 YEAAEAQHHMNGKRFAGREISVVLA-AESRKR 144
+A +A ++G+ G + V ++ E R R
Sbjct: 61 RDATDAVRELDGRTLCGCRVRVEMSNGEKRSR 92
Score = 43 (20.2 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 14/47 (29%), Positives = 16/47 (34%)
Query: 210 SPRRRHIEHPGSPRGPPQERGAEYSR-RSYSPGYDDSADRRNPNGNG 255
SPRR + R SR R+Y P S R NG
Sbjct: 126 SPRRSFSRSRSRSLSRERRRERSLSRDRNYKPSRSFSGSRSRSRSNG 172
Score = 38 (18.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 219 PGSPRGPPQE--RGAEYSRRSYSPGYDDSADR 248
P R P + RG +Y RRS P S R
Sbjct: 98 PSWSRRPRDDYRRGDDYRRRSSPPARHRSPRR 129
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 125 (49.1 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
S+ V NIP + E+L+ F G V + L D +G+P+GF F ++ D A A +
Sbjct: 17 SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRN 76
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQ 150
+NG GR + V A + R E M+Q
Sbjct: 77 LNGYEIGGRTLRVDNACTEKSRME-MQQ 103
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 124 (48.7 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A A
Sbjct: 93 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 152
Query: 120 QHHMNGKRFAGREISVVLAAESRKRP 145
M G+ GR+I A +RK P
Sbjct: 153 IQQMGGQWLGGRQIRTNWA--TRKPP 176
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 124 (48.7 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
NH + V ++ + E+++A F FG + D + KD TG+ +G+ FV F + ++A A
Sbjct: 93 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 152
Query: 120 QHHMNGKRFAGREISVVLAAESRKRP 145
M G+ GR+I A +RK P
Sbjct: 153 IQQMGGQWLGGRQIRTNWA--TRKPP 176
>UNIPROTKB|F1LVK5 [details] [associations]
symbol:F1LVK5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 IPI:IPI00569674 PRIDE:F1LVK5
Ensembl:ENSRNOT00000007700 Uniprot:F1LVK5
Length = 249
Score = 95 (38.5 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 77 ELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136
+LR F ++G V DV + D + + R FAFV F + +A EA+ H NG G + V
Sbjct: 102 DLREVFSKYGPVADVSIVYDQQSSQSREFAFVCFENIDDAKEAKEHANGMELDGCQSRVD 161
Query: 137 LAAESR 142
+ R
Sbjct: 162 FSITKR 167
Score = 64 (27.6 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 21/64 (32%), Positives = 25/64 (39%)
Query: 206 DYSISPRRRHIEHPGSPRGPP---QERGAEYSRRSYSPGYDDSADRRNPNGNGYGEKSGY 262
D+SI+ +R H PG P R Y R Y GYDD P G G G+
Sbjct: 161 DFSIT-KRLHTPTPGIYMERPTCGSSRCQGYYDRGYDRGYDDRDYYSRPYRGGGGGDGGW 219
Query: 263 EETQ 266
Q
Sbjct: 220 RAAQ 223
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 117 (46.2 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAA 117
+++ S+ V NI D + +R+ F + G V + + D TG+P+G+ F++F D A
Sbjct: 14 DRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAE 73
Query: 118 EAQHHMNGKRFAGREISVVLAA 139
A ++NG +GR + V AA
Sbjct: 74 VAIRNLNGYELSGRILRVDSAA 95
Score = 40 (19.1 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 211 PRRRHIEHPGSPRGPP 226
P + HPG GPP
Sbjct: 224 PPKPTFAHPGPSMGPP 239
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 109 (43.4 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 66 VRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125
V +P D +EL F+RFG +R V++ + P GFAFV++ D +A +A ++G
Sbjct: 7 VGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRDAEDAVRALDG 61
Query: 126 KRFAGREISVVLAAESRK 143
R G V L+ R+
Sbjct: 62 SRICGVRARVELSTGQRR 79
Score = 36 (17.7 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 212 RRRHIEHPGSPRGPPQERGAEYSR-RSYS 239
R R E S PQER +S+ RS S
Sbjct: 139 RSRERERTRSRSRSPQERDRSHSKSRSRS 167
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 109 (43.4 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 66 VRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125
V +P D +EL F+RFG +R V++ + P GFAFV++ D +A +A ++G
Sbjct: 7 VGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRDAEDAVRALDG 61
Query: 126 KRFAGREISVVLAAESRK 143
R G V L+ R+
Sbjct: 62 SRICGVRARVELSTGQRR 79
Score = 36 (17.7 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 212 RRRHIEHPGSPRGPPQERGAEYSR-RSYS 239
R R E S PQER +S+ RS S
Sbjct: 139 RSRERERTRSRSRSPQERDRSHSKSRSRS 167
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 128 (50.1 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G ++V+N+P + +++ F FG ++ V +PK + RGFAFV+F+ P EA A
Sbjct: 763 GKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF-DKSARGFAFVEFLLPKEAENAMD 821
Query: 122 HMNGKRFAGREISVVLAAESRKRPEE 147
++G GR + + A E EE
Sbjct: 822 QLHGVHLLGRRLVMQYAEEDAVDAEE 847
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L +RNI + E+ R F FG + +V++ D TG+ +GFA+V F D A A
Sbjct: 345 GRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYV 404
Query: 122 HMNGKRFAGREISVVLAAESRK 143
++ + F GR + + L E +K
Sbjct: 405 ELDKQIFQGRLLHI-LPGEEKK 425
WARNING: HSPs involving 274 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 299 193 0.00098 110 3 11 22 0.37 33
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 524
No. of states in DFA: 554 (59 KB)
Total size of DFA: 165 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.34u 0.10s 17.44t Elapsed: 00:00:01
Total cpu time: 17.36u 0.10s 17.46t Elapsed: 00:00:01
Start: Fri May 10 03:25:02 2013 End: Fri May 10 03:25:03 2013
WARNINGS ISSUED: 2