BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043443
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 92/129 (71%), Gaps = 10/129 (7%)
Query: 20 RRYSPPYYSPPRRGYGGRGRSPPRRGYGGGGGGYGRRKEQNHGSLLVRNIPLDCRPEELR 79
R Y+P SPPR GYG RGRSP RG YG R SLLVRN+ DCR E+LR
Sbjct: 4 RSYTP---SPPR-GYGRRGRSPSPRGR------YGGRSRDLPTSLLVRNLRHDCRQEDLR 53
Query: 80 APFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139
FE+FG V+D+YLP+DYYTG+PRGF FVQF+DP +AA+A+HHM+G GRE++VV A
Sbjct: 54 KSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAE 113
Query: 140 ESRKRPEEM 148
E+RK+P EM
Sbjct: 114 ENRKKPTEM 122
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
+ SL +RN+ RPE+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A
Sbjct: 9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 121 HHMNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
+++N K GR+I + A RK P +M+ + R
Sbjct: 69 YNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
+ SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 121 HHMNGKRFAGREISVVLAAESRKRPEEMRQR 151
H+++ K GR+I + A RK P +M+ +
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
+ SL VRN+ D R E+LR F R+G + DVY+P D+YT PRGFA+VQF D +A +A
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 121 HHMNGKRFAGREISVVLAAESRKRPEEMRQR 151
H+++ K GR+I + A RK P +M+ +
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLA 138
M+G GRE+ V +A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAE 118
+ SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +
Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 119 AQHHMNGKRFAGREISVVLA 138
A M+G GRE+ V +A
Sbjct: 71 AMDAMDGAVLDGRELRVQMA 90
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLA 138
M+G GRE+ V +A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLA 138
M+G GRE+ V +A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLA 138
M+G GRE+ V +A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLA 138
M+G GRE+ V +A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
SL V N+ P+ LR FE++G V DVY+P+D YT E RGFAFV+F D +A +A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 123 MNGKRFAGREISVVLA 138
M+G GRE+ V +A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
+L V N+ P+ LR FE++G V DVY+P++ +T PRGFAFV+F D +A +A+
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 123 MNGKRFAGREISVVLA 138
M+G GRE+ V +A
Sbjct: 75 MDGAELDGRELRVQVA 90
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ V+NI D EE R FE+FG + L +D +G+ RGF FV F AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH---RFRGGSSYGG 162
+N K F G+++ V A + +R EE+R+++ R S Y G
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQG 339
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
G++ ++N+ + L F FG + + +D + G +G+ FV + A A
Sbjct: 142 QGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAI 200
Query: 121 HHMNGKRFAGREISV---VLAAESRKRPEEMR 149
H+NG +++ V + + + + EEM+
Sbjct: 201 KHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMK 232
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 100 GEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138
G+ +GF FV F P EA++A MN + G+ + V LA
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALA 468
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 49 GGGGYGRRKEQNHG--SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFA 106
GGGG R +G SL + N+ P +LR FER+G + DV++P+D Y+ + +GF
Sbjct: 4 GGGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFG 63
Query: 107 FVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAESR 142
FV+F + +A A +GK GRE+ V LA R
Sbjct: 64 FVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDR 99
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G + VRN+ + E+L F +FG + ++++P DY + + +G AF+ ++ P A +A +
Sbjct: 361 GRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALN 420
Query: 122 HMNGKRFAGREISVV 136
M+GK F GR I V+
Sbjct: 421 DMDGKVFQGRLIHVL 435
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
++++N+P + +E+R F +G ++ V +PK G RGF FV+F+ EA A +
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGH-RGFGFVEFLTEEEAKNAMEAL 855
Query: 124 NGKRFAGREISVVLAAESRKRPEEMRQR 151
F GR + V+ AE K +E+R++
Sbjct: 856 GNSHFYGRHL-VLQYAEQDKNIDELREK 882
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEA 116
LLV+NIP + EL F +FG + V L R A ++++ P EA
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELSRVVL------SPARTIALIEYIHPNEA 601
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 102 PRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAESRKRPEEMRQR 151
P GF F++F A E +NG G EIS+ L+ ++ +E+ +R
Sbjct: 723 PCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKR 772
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L V + L + L+A F ++G + V+L KD T + RGFAFV F P +A A M
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 124 NGKRFAGREISVV 136
NGK G+ I V
Sbjct: 70 NGKYLDGKAIMVA 82
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L + + L + L+A F ++G + V+L KD T + RGFAFV F P +A A M
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 124 NGKRFAGREISVVLAAE-----SRKRP------EEMRQRHRFRGGSS 159
NGK G+ I V + SR P R HR RGG S
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGGS 116
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + L+ + L A F ++G + +V L KD T + RGFAFV F P +A A
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVAQATK 86
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ +NI LD EE + FE +G + +YL KD+ G+ +GF FV F + A +A
Sbjct: 230 NFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKA 288
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRH---RFRGGSSYGG 162
+N K G++I V A + R+R EE+++++ R S Y G
Sbjct: 289 VDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQG 334
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
+L ++N+ E+L F+ FG + + D TG+ +GF FV F P EA +A
Sbjct: 336 NLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDE-TGKSKGFGFVCFSSPEEATKAITE 394
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQ------RHRFRGGSSYGG 162
MN + G+ + V LA R ++ Q + R + ++ GG
Sbjct: 395 MNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGG 440
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + L+ + L A F ++G + +V L KD T + RGFAFV F P A A
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVAQATK 86
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + L+ + L A F ++G + +V L KD T + RGFAF+ F P +A A
Sbjct: 8 GKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVAQATK 86
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + ++ L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L + + D E L F ++G + +V + KD T RGF FV F +P +A +A
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 63 MMAMNGKAVDGRQIRVDQAGKS 84
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
L++RN+ C ++L+A F +G V +V +PK G+ RGFAFVQF + EA +A
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKP-DGKMRGFAFVQFKNLLEAGKALKGA 174
Query: 124 NGKRFAGREISVVLAAESRK 143
N K GR ++V A K
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD------PYEA 116
++ +RN+ D E L ++FG ++ V + T +G AF QF+ A
Sbjct: 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 385
Query: 117 AEAQHHMNGKRFAGREISVVLAA 139
A + G + GR++ V LA
Sbjct: 386 ASLEAEGGGLKLDGRQLKVDLAV 408
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F +FG + +V L KD T + RGFAFV + +P +A +A
Sbjct: 8 GKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 EMNGKPLDGKPIKVEQATK 86
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 36 GRGRS---PPRRGYGGGGGGY----GRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVV 88
G G+S PP GG GG G+ + + +L V N+ +ELR FERFG V
Sbjct: 175 GAGKSSYVPPHLRNGGAAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRV 234
Query: 89 RDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125
V+L KD TG +GFAF+ F + +AA+A M+G
Sbjct: 235 TRVFLAKDRETGLAKGFAFISFQERSDAAKACEKMDG 271
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ V+NI ++ EE F ++G + L KD G+P+GF FV FVD AA+A
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDA-EGKPKGFGFVNFVDHNAAAKA 287
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRHR 153
+NGK F + + V A + +R EE+++++
Sbjct: 288 VEELNGKEFKSQALYVGRAQKKYERAEELKKQYE 321
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122
+L ++N+ E+L+ F +G + + +D G +GF FV F P EA +A
Sbjct: 335 NLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQ-EGNSKGFGFVCFSSPEEATKAMTE 393
Query: 123 MNGKRFAGREISVVLAAESRKRPEEMRQRHRFRG 156
N + AG+ + V +A R ++ Q+ + R
Sbjct: 394 KNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 427
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G++ ++N+ + L F FG V + D G RGF FV F + +A +A
Sbjct: 138 GNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIE 196
Query: 122 HMNGKRFAGREISVVLAAESRKRPEEMRQ 150
+NG G E+ V + + R ++ +
Sbjct: 197 AVNGMLMNGLEVYVAMHVPKKDRISKLEE 225
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L +RN+P +E+ A FE FG V+ V++P D T +G AFV F DP A A
Sbjct: 314 GRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYR 373
Query: 122 HMNGKRFAGREISVV-------LAAESRKRPEEMRQ 150
+G F GR + ++ LA K+ ++Q
Sbjct: 374 AKDGSTFQGRLLHLLPAVNKDALAETGSKKTATLKQ 409
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 64 LLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123
+L++N+P + ++R F G ++ V LPK + RGF FV++ EA A +
Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPK-KFDNTTRGFGFVEYSTVREAQSAMEAL 779
Query: 124 NGKRFAGREISVV---LAAESRKRPEEMRQRHR 153
GR + + LA+ ++++ + R + +
Sbjct: 780 KHTHLLGRHLVLQWSHLASSTQQQVDMQRSKTK 812
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ V+NI + +E R FE++G V L +D TG+ RGF FV F +A++A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRHRFRGGSSYGGPRSSYYGRYRSRSLSRS 179
+N K F G+ + V A + +R EE+R+ SY R +Y+ +L
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRK--------SYEAARQEKASKYQGVNLYIK 351
Query: 180 RSPHHPQGSRSRYRSRSYTPV 200
+ R + P+
Sbjct: 352 NLDDEVDDEKLRQLFSEFGPI 372
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
G++ ++N+ + + L F FG + + +D G +G+ FV + A++A
Sbjct: 148 QGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAI 206
Query: 121 HHMNGKRFAGREISV 135
H+NG +++ V
Sbjct: 207 KHVNGMLLNEKKVYV 221
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G V +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
+NGK G+ I V A +
Sbjct: 68 ELNGKALDGKPIKVEQATK 86
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 41 PP--RRGYGGG-----GGGYGRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYL 93
PP R G GG GG YG R + +L V N+ +ELR FERFG V V+L
Sbjct: 197 PPAMRAGAGGAQGERMGGKYGER--DDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFL 254
Query: 94 PKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF 128
KD TG +GFAF+ + D +A +A + M+G F
Sbjct: 255 AKDRDTGMAKGFAFISYADRDDAVKACNKMDGFGF 289
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 36 GRGRS---PPRRGYGGGGGGY----GRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVV 88
G G+S PP GG GG G+ + + +L V N+ +ELR FERFG V
Sbjct: 175 GAGKSSYVPPHLRNGGTAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRV 234
Query: 89 RDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125
V+L KD TG +GFAF+ F + +AA+A M+G
Sbjct: 235 TRVFLAKDRETGLAKGFAFISFQERSDAAKACEKMDG 271
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + ++ L KD T + RGFAFV F P +A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + D + L F ++G + +V + KD T RGF FV F + +A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
N ++ V+NI L+ EE R F ++G V L +D G+ RGF FV F AA+A
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKA 302
Query: 120 QHHMNGKRFAGREISVVLAAESRKRPEEMRQRHRFRGGSSYGGPRSSYYGRYRSRSLSRS 179
+NGK F G+++ V A + +R EE+R+ SY R +Y+ +L
Sbjct: 303 VEELNGKEFRGQDLYVGRAQKKHEREEELRK--------SYEAARLEKANKYQGVNLYIK 354
Query: 180 RSPHHPQGSRSRYRSRSYTPV 200
+ R Y P+
Sbjct: 355 NLADDIDDDKLRQMFSEYGPI 375
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120
G++ ++N+ + + L F FG + + +D G +G+ FV + AA+A
Sbjct: 152 QGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAI 210
Query: 121 HHMNGKRFAGREISV 135
H+N +++ V
Sbjct: 211 KHVNNMLLNEKKVYV 225
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 100 GEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAESRKRPEEMR 149
G+ +GF FV F +P +A +A MN + G+ + V LA R ++
Sbjct: 431 GKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLE 480
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 50 GGGYGRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQ 109
G +R+ + +L V N+ D R EELR F RFG ++ VYL KD TG +GFAFV
Sbjct: 190 GDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVS 249
Query: 110 FVDPYEAAEAQHHMNG 125
+ D A +A+ ++G
Sbjct: 250 YYDRDCAIKARDRLDG 265
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 51 GGYGRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQF 110
GG RR E+N + V N+P +C ELRA F G V V++ KD +T +P+GFAFV F
Sbjct: 199 GGAERRSEEN--TCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTF 256
Query: 111 VDPYEAAEAQHHMNGKRF 128
+ A +NG +
Sbjct: 257 EHRSQTEAAIQKLNGYKL 274
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L F ++G + +V L KD T + RGFAFV F P +A +A
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121
G L + + + + L A F ++G + ++ L KD T + RGFAFV F P +A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVAR 67
Query: 122 HMNGKRFAGREISVVLAAE 140
MNGK G+ I V A +
Sbjct: 68 DMNGKSLDGKAIKVEQATK 86
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119
+ G L V + + E L F ++G V +V + KD + RGF FV F +P +A +A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 120 QHHMNGKRFAGREISVVLAAES 141
MNGK GR+I V A +S
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKS 85
>sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=tif35 PE=3 SV=1
Length = 289
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 41 PPRRGYGGGGGG---YGRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDY 97
PP G GGG G+ ++ + +L V N+ +ELR FERFG V V+L +D
Sbjct: 185 PPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDR 244
Query: 98 YTGEPRGFAFVQFVDPYEAAEAQHHMNG 125
T +GFAF+ F D +AA A M+G
Sbjct: 245 ETQRAKGFAFISFADRSDAARACDKMDG 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,721,908
Number of Sequences: 539616
Number of extensions: 6642378
Number of successful extensions: 33749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 666
Number of HSP's that attempted gapping in prelim test: 25074
Number of HSP's gapped (non-prelim): 6241
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 61 (28.1 bits)