Query 043443
Match_columns 299
No_of_seqs 459 out of 2930
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 4.4E-22 1.5E-26 190.6 21.2 85 60-144 101-185 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-22 5.8E-27 154.9 11.5 81 60-140 18-98 (99)
3 1x4c_A Splicing factor, argini 99.9 1.2E-21 4.1E-26 152.2 15.0 77 57-140 11-92 (108)
4 2e5h_A Zinc finger CCHC-type a 99.9 7.7E-22 2.6E-26 149.0 13.1 84 56-139 11-94 (94)
5 2cqd_A RNA-binding region cont 99.9 2.3E-21 7.7E-26 152.3 15.2 88 53-141 9-96 (116)
6 2dgo_A Cytotoxic granule-assoc 99.9 3.7E-21 1.3E-25 150.7 14.7 89 55-143 9-97 (115)
7 3beg_B Splicing factor, argini 99.9 4.3E-22 1.5E-26 156.6 9.2 79 54-139 9-92 (115)
8 2cq0_A Eukaryotic translation 99.9 1.5E-21 5.1E-26 150.1 11.9 86 57-142 11-96 (103)
9 1x5u_A Splicing factor 3B subu 99.9 2.9E-21 9.8E-26 148.9 12.8 88 56-143 10-97 (105)
10 3s8s_A Histone-lysine N-methyl 99.9 2E-21 6.8E-26 151.8 11.9 84 59-142 4-87 (110)
11 2cqc_A Arginine/serine-rich sp 99.9 2.8E-21 9.6E-26 146.0 11.9 85 56-140 10-94 (95)
12 2do4_A Squamous cell carcinoma 99.9 5.5E-21 1.9E-25 146.1 13.5 88 54-142 10-97 (100)
13 2cpz_A CUG triplet repeat RNA- 99.9 3.9E-21 1.3E-25 150.7 13.0 87 57-143 21-107 (115)
14 2do0_A HnRNP M, heterogeneous 99.9 8.7E-21 3E-25 148.3 14.8 85 57-142 11-95 (114)
15 2dnm_A SRP46 splicing factor; 99.9 2.4E-21 8.1E-26 148.9 11.2 87 56-142 8-94 (103)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.5E-21 1.2E-25 147.6 11.6 86 58-143 9-94 (102)
17 2lkz_A RNA-binding protein 5; 99.9 1.6E-21 5.4E-26 148.5 9.5 86 55-140 3-94 (95)
18 1x4h_A RNA-binding protein 28; 99.9 7.3E-21 2.5E-25 147.9 13.5 89 55-143 9-103 (111)
19 1x5s_A Cold-inducible RNA-bind 99.9 3.2E-21 1.1E-25 147.8 11.1 85 58-142 9-93 (102)
20 2cq3_A RNA-binding protein 9; 99.9 1.4E-20 4.9E-25 144.5 14.5 87 55-143 9-95 (103)
21 2lxi_A RNA-binding protein 10; 99.9 9.9E-22 3.4E-26 148.2 7.7 84 61-144 1-86 (91)
22 1whw_A Hypothetical protein ri 99.9 7.9E-21 2.7E-25 144.8 12.8 86 58-143 5-90 (99)
23 2cph_A RNA binding motif prote 99.9 8.8E-21 3E-25 146.5 13.0 89 55-143 9-99 (107)
24 2d9p_A Polyadenylate-binding p 99.8 5.3E-21 1.8E-25 146.9 11.5 86 56-143 10-95 (103)
25 2dgs_A DAZ-associated protein 99.8 9.3E-21 3.2E-25 144.5 12.8 86 57-143 6-91 (99)
26 2cpe_A RNA-binding protein EWS 99.8 7.1E-21 2.4E-25 148.7 12.2 89 55-143 9-105 (113)
27 2dh8_A DAZ-associated protein 99.8 4E-21 1.4E-25 148.1 10.1 89 54-143 9-97 (105)
28 1wi8_A EIF-4B, eukaryotic tran 99.8 1.3E-20 4.5E-25 145.1 12.9 86 56-143 10-96 (104)
29 3md1_A Nuclear and cytoplasmic 99.8 1.1E-20 3.6E-25 139.3 11.5 81 61-141 1-81 (83)
30 3ex7_B RNA-binding protein 8A; 99.8 6.2E-21 2.1E-25 151.9 10.8 87 57-143 18-104 (126)
31 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.9E-21 3.1E-25 140.9 10.8 83 59-141 4-86 (87)
32 2dng_A Eukaryotic translation 99.8 1.7E-20 5.8E-25 144.2 12.7 84 57-142 11-94 (103)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.6E-21 3.3E-25 140.1 10.8 82 58-139 4-85 (85)
34 2dnz_A Probable RNA-binding pr 99.8 1.4E-20 4.9E-25 142.2 11.9 83 60-142 4-86 (95)
35 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-20 3.7E-25 145.9 11.2 88 55-142 7-97 (106)
36 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.5E-20 1.2E-24 142.3 13.8 87 55-143 9-95 (103)
37 2ywk_A Putative RNA-binding pr 99.8 7.4E-21 2.5E-25 143.8 9.9 85 55-140 10-94 (95)
38 1x4a_A Splicing factor, argini 99.8 4.6E-20 1.6E-24 143.2 14.4 84 56-142 17-100 (109)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 2.8E-20 9.7E-25 143.3 12.9 86 57-143 11-99 (105)
40 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.9E-20 6.6E-25 154.6 12.5 86 58-143 36-121 (156)
41 2x1f_A MRNA 3'-END-processing 99.8 2.6E-20 8.9E-25 141.3 12.2 83 61-143 2-84 (96)
42 2kxn_B Transformer-2 protein h 99.8 9.4E-21 3.2E-25 152.1 10.2 86 57-142 42-127 (129)
43 2cqp_A RNA-binding protein 12; 99.8 8.3E-21 2.8E-25 144.4 9.3 83 58-140 12-94 (98)
44 1x5t_A Splicing factor 3B subu 99.8 1.3E-20 4.5E-25 142.7 10.2 83 60-142 4-87 (96)
45 1p27_B RNA-binding protein 8A; 99.8 1.7E-20 5.8E-25 144.8 10.8 86 57-142 19-104 (106)
46 2fy1_A RNA-binding motif prote 99.8 2.5E-20 8.4E-25 146.8 11.8 84 58-142 4-87 (116)
47 1oo0_B CG8781-PA, drosophila Y 99.8 3.1E-20 1E-24 144.3 12.1 86 57-142 22-107 (110)
48 3ulh_A THO complex subunit 4; 99.8 2.7E-20 9.3E-25 143.8 11.4 82 57-139 25-106 (107)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.3E-20 1.8E-24 148.7 12.8 82 57-138 59-140 (140)
50 3p5t_L Cleavage and polyadenyl 99.8 4.3E-21 1.5E-25 144.1 5.8 82 62-143 2-85 (90)
51 1why_A Hypothetical protein ri 99.8 6.8E-20 2.3E-24 139.2 12.5 80 57-142 13-94 (97)
52 2cpf_A RNA binding motif prote 99.8 2.1E-20 7.1E-25 142.2 9.7 85 59-143 3-90 (98)
53 2ek1_A RNA-binding protein 12; 99.8 7.2E-21 2.5E-25 143.8 7.0 81 59-139 13-93 (95)
54 1u6f_A Tcubp1, RNA-binding pro 99.8 3.9E-20 1.3E-24 149.7 11.7 87 57-143 38-124 (139)
55 2khc_A Testis-specific RNP-typ 99.8 8.2E-20 2.8E-24 143.7 13.3 83 57-139 36-118 (118)
56 4a8x_A RNA-binding protein wit 99.8 3.1E-20 1.1E-24 138.1 10.2 83 60-142 3-86 (88)
57 2cqg_A TDP-43, TAR DNA-binding 99.8 9.4E-20 3.2E-24 139.9 13.0 87 55-143 9-95 (103)
58 2div_A TRNA selenocysteine ass 99.8 3.1E-20 1.1E-24 141.5 10.2 83 59-141 7-94 (99)
59 2dgu_A Heterogeneous nuclear r 99.8 1.1E-19 3.7E-24 139.8 13.2 79 58-144 8-86 (103)
60 3ns6_A Eukaryotic translation 99.8 7.9E-21 2.7E-25 145.7 6.7 83 59-141 4-93 (100)
61 4f25_A Polyadenylate-binding p 99.8 3.8E-20 1.3E-24 145.4 10.7 81 61-143 5-85 (115)
62 2la6_A RNA-binding protein FUS 99.8 4E-20 1.4E-24 141.0 10.5 83 57-139 9-99 (99)
63 1wg5_A Heterogeneous nuclear r 99.8 6.1E-20 2.1E-24 141.6 11.5 83 57-141 11-94 (104)
64 2lea_A Serine/arginine-rich sp 99.8 1.3E-20 4.6E-25 152.3 8.1 88 56-143 42-129 (135)
65 2cpy_A RNA-binding protein 12; 99.8 3.1E-20 1.1E-24 145.6 9.7 84 57-142 11-95 (114)
66 2dgv_A HnRNP M, heterogeneous 99.8 5.6E-20 1.9E-24 138.1 10.5 83 58-142 5-87 (92)
67 1wez_A HnRNP H', FTP-3, hetero 99.8 3.1E-20 1.1E-24 143.0 8.7 81 58-141 12-92 (102)
68 3ucg_A Polyadenylate-binding p 99.8 8.7E-20 3E-24 136.1 10.9 81 60-141 5-85 (89)
69 1s79_A Lupus LA protein; RRM, 99.8 4.4E-20 1.5E-24 142.5 9.4 85 54-140 4-88 (103)
70 3s7r_A Heterogeneous nuclear r 99.8 1.2E-19 3.9E-24 135.0 11.3 82 56-138 6-87 (87)
71 2jrs_A RNA-binding protein 39; 99.8 5.8E-20 2E-24 142.8 10.0 84 58-141 23-106 (108)
72 2dgx_A KIAA0430 protein; RRM d 99.8 1.5E-19 5.3E-24 137.2 12.1 80 60-142 8-91 (96)
73 2db1_A Heterogeneous nuclear r 99.8 6E-20 2.1E-24 145.0 10.1 83 57-141 13-98 (118)
74 2cpi_A CCR4-NOT transcription 99.8 7.4E-20 2.5E-24 142.8 10.4 86 57-142 11-102 (111)
75 2hgl_A HNRPF protein, heteroge 99.8 3.4E-20 1.2E-24 150.2 8.6 83 56-140 39-124 (136)
76 3n9u_C Cleavage and polyadenyl 99.8 7.1E-20 2.4E-24 151.7 10.7 83 59-141 53-137 (156)
77 2dhg_A TRNA selenocysteine ass 99.8 7E-20 2.4E-24 140.8 9.8 84 58-142 6-91 (104)
78 2f3j_A RNA and export factor b 99.8 5.1E-19 1.8E-23 149.5 16.0 83 59-142 86-168 (177)
79 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-19 3.7E-24 151.7 11.6 87 56-142 67-153 (165)
80 1sjq_A Polypyrimidine tract-bi 99.8 6.9E-20 2.4E-24 141.5 9.5 81 58-144 13-95 (105)
81 2dis_A Unnamed protein product 99.8 1.7E-19 5.9E-24 139.7 11.8 86 58-143 5-94 (109)
82 2dgw_A Probable RNA-binding pr 99.8 2E-19 6.9E-24 134.9 11.8 83 57-142 6-88 (91)
83 2cq4_A RNA binding motif prote 99.8 8E-20 2.7E-24 143.0 9.7 82 59-141 23-104 (114)
84 1x4d_A Matrin 3; structural ge 99.8 9E-20 3.1E-24 140.4 9.7 78 58-141 12-92 (102)
85 2fc9_A NCL protein; structure 99.8 2.9E-19 9.9E-24 136.7 12.4 81 57-141 11-91 (101)
86 2m2b_A RNA-binding protein 10; 99.8 3.9E-20 1.3E-24 148.6 7.3 85 57-142 19-109 (131)
87 1p1t_A Cleavage stimulation fa 99.8 3.1E-20 1.1E-24 142.6 6.4 85 59-143 6-90 (104)
88 2kt5_A RNA and export factor-b 99.8 9.3E-19 3.2E-23 139.0 15.1 85 58-143 32-116 (124)
89 2rs2_A Musashi-1, RNA-binding 99.8 2.5E-19 8.6E-24 139.4 11.4 86 57-143 21-106 (109)
90 1wel_A RNA-binding protein 12; 99.8 5.5E-20 1.9E-24 146.3 7.4 84 57-141 21-104 (124)
91 2cpj_A Non-POU domain-containi 99.8 2.5E-19 8.6E-24 136.6 10.7 80 57-142 11-90 (99)
92 2cq1_A PTB-like protein L; RRM 99.8 7.1E-19 2.4E-23 135.2 13.1 81 57-143 11-93 (101)
93 2mss_A Protein (musashi1); RNA 99.8 9.3E-20 3.2E-24 131.8 7.3 75 63-138 1-75 (75)
94 1x5o_A RNA binding motif, sing 99.8 7.8E-19 2.7E-23 137.2 13.1 86 55-141 19-112 (114)
95 1x4b_A Heterogeneous nuclear r 99.8 2.8E-19 9.7E-24 140.3 10.6 83 60-143 26-108 (116)
96 1x4e_A RNA binding motif, sing 99.8 4.2E-20 1.4E-24 136.8 5.5 81 59-139 3-83 (85)
97 2ytc_A PRE-mRNA-splicing facto 99.8 5E-19 1.7E-23 130.9 11.2 78 56-139 7-85 (85)
98 2dnq_A RNA-binding protein 4B; 99.8 4.5E-19 1.6E-23 132.8 11.1 78 58-143 5-82 (90)
99 2e5j_A Methenyltetrahydrofolat 99.8 4.3E-19 1.5E-23 134.9 11.0 81 57-142 15-95 (97)
100 3r27_A HnRNP L, heterogeneous 99.8 4.4E-19 1.5E-23 135.8 11.0 77 59-141 19-97 (100)
101 2kn4_A Immunoglobulin G-bindin 99.8 4E-19 1.4E-23 146.7 11.6 85 59-143 68-152 (158)
102 2fc8_A NCL protein; structure 99.8 4.5E-19 1.5E-23 135.8 10.9 83 57-142 11-93 (102)
103 1wex_A Hypothetical protein (r 99.8 5.9E-19 2E-23 136.4 11.6 80 58-143 12-93 (104)
104 2dgt_A RNA-binding protein 30; 99.8 8.1E-19 2.8E-23 132.0 12.0 79 57-143 6-84 (92)
105 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-19 4E-24 139.0 7.4 82 58-141 16-98 (100)
106 2jwn_A Embryonic polyadenylate 99.8 3.3E-19 1.1E-23 141.4 10.3 81 60-141 35-115 (124)
107 2jvr_A Nucleolar protein 3; RN 99.8 2.8E-19 9.5E-24 139.8 9.6 77 60-140 27-104 (111)
108 2err_A Ataxin-2-binding protei 99.8 4E-19 1.4E-23 138.2 10.3 83 57-141 25-107 (109)
109 2ad9_A Polypyrimidine tract-bi 99.8 4.4E-19 1.5E-23 140.2 10.3 81 58-144 28-110 (119)
110 3q2s_C Cleavage and polyadenyl 99.8 1.9E-19 6.5E-24 158.2 8.9 82 60-141 67-150 (229)
111 2dnp_A RNA-binding protein 14; 99.8 9.3E-19 3.2E-23 131.1 11.3 78 57-142 5-82 (90)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.2E-19 4.1E-24 131.6 6.2 76 62-138 1-76 (77)
113 2nlw_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 136.7 9.5 81 59-141 13-100 (105)
114 2wbr_A GW182, gawky, LD47780P; 99.8 6.3E-19 2.2E-23 131.0 9.5 73 61-139 7-79 (89)
115 2hgn_A Heterogeneous nuclear r 99.8 7.7E-20 2.6E-24 148.6 5.0 83 57-142 42-124 (139)
116 2dnn_A RNA-binding protein 12; 99.8 6.4E-19 2.2E-23 137.3 10.0 79 59-140 14-92 (109)
117 2ki2_A SS-DNA binding protein 99.8 9E-20 3.1E-24 136.5 4.4 81 62-143 2-82 (90)
118 2cpd_A Apobec-1 stimulating pr 99.8 4.2E-18 1.4E-22 129.8 13.7 77 58-142 12-90 (99)
119 1x4g_A Nucleolysin TIAR; struc 99.8 1.2E-18 4.2E-23 135.2 10.8 79 58-142 22-100 (109)
120 2hgm_A HNRPF protein, heteroge 99.8 3.6E-19 1.2E-23 142.2 7.9 81 57-140 38-120 (126)
121 1fj7_A Nucleolin RBD1, protein 99.8 1.5E-19 5.1E-24 138.3 5.0 83 59-143 15-97 (101)
122 2e44_A Insulin-like growth fac 99.8 1.4E-18 4.9E-23 131.5 10.1 80 58-141 12-92 (96)
123 2cpx_A Hypothetical protein FL 99.8 2E-19 7E-24 140.7 5.3 82 58-143 22-107 (115)
124 1whx_A Hypothetical protein ri 99.8 6.8E-19 2.3E-23 137.4 8.2 77 59-141 8-84 (111)
125 2a3j_A U1 small nuclear ribonu 99.8 1.6E-18 5.6E-23 138.6 10.6 81 59-142 27-111 (127)
126 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-18 5.2E-23 134.8 10.0 79 57-143 27-105 (108)
127 2krb_A Eukaryotic translation 99.8 6.5E-19 2.2E-23 129.4 7.1 72 62-135 2-80 (81)
128 2lmi_A GRSF-1, G-rich sequence 99.8 5.2E-19 1.8E-23 137.0 6.8 82 57-140 7-91 (107)
129 2la4_A Nuclear and cytoplasmic 99.8 1.3E-18 4.6E-23 132.9 9.0 76 59-140 25-100 (101)
130 2cqh_A IGF-II mRNA-binding pro 99.8 1.5E-18 5E-23 130.7 9.0 77 59-142 6-84 (93)
131 1x5p_A Negative elongation fac 99.8 8.4E-18 2.9E-22 127.7 13.2 78 57-142 11-88 (97)
132 2xnq_A Nuclear polyadenylated 99.8 4.4E-18 1.5E-22 129.6 11.6 77 57-141 18-95 (97)
133 2hvz_A Splicing factor, argini 99.8 8.9E-19 3E-23 133.9 7.8 76 62-142 1-76 (101)
134 1nu4_A U1A RNA binding domain; 99.8 1.4E-18 4.8E-23 131.7 8.6 84 57-143 4-91 (97)
135 1x4f_A Matrin 3; structural ge 99.8 8E-19 2.7E-23 137.2 7.2 80 57-142 21-103 (112)
136 1iqt_A AUF1, heterogeneous nuc 99.8 5E-19 1.7E-23 127.8 5.4 75 63-138 1-75 (75)
137 2e5g_A U6 snRNA-specific termi 99.8 3.8E-18 1.3E-22 128.8 10.3 79 58-142 5-83 (94)
138 2dha_A FLJ20171 protein; RRM d 99.8 9.6E-19 3.3E-23 139.2 7.3 81 58-140 20-104 (123)
139 3lqv_A PRE-mRNA branch site pr 99.8 4E-18 1.4E-22 133.3 10.6 80 59-141 6-85 (115)
140 2kvi_A Nuclear polyadenylated 99.8 2.2E-18 7.4E-23 130.8 8.7 78 57-142 6-84 (96)
141 2lcw_A RNA-binding protein FUS 99.6 6.9E-20 2.4E-24 143.9 0.0 85 58-142 4-96 (116)
142 1fjc_A Nucleolin RBD2, protein 99.8 1.6E-18 5.4E-23 131.2 7.5 81 57-142 12-92 (96)
143 1wf1_A RNA-binding protein RAL 99.7 4.1E-18 1.4E-22 132.4 9.5 74 60-141 26-100 (110)
144 4f02_A Polyadenylate-binding p 99.7 7.3E-18 2.5E-22 146.0 11.6 84 58-141 12-95 (213)
145 3egn_A RNA-binding protein 40; 99.7 1.4E-18 4.9E-23 141.3 5.6 86 59-144 43-133 (143)
146 2xs2_A Deleted in azoospermia- 99.7 2.3E-18 7.9E-23 131.8 6.3 81 59-142 7-87 (102)
147 2cq2_A Hypothetical protein LO 99.7 6.8E-18 2.3E-22 132.2 8.7 77 58-140 22-105 (114)
148 2i2y_A Fusion protein consists 99.7 9.6E-18 3.3E-22 137.5 9.9 80 57-141 69-148 (150)
149 3md3_A Nuclear and cytoplasmic 99.7 1.8E-17 6.2E-22 136.3 11.6 82 58-139 84-165 (166)
150 1wg1_A KIAA1579 protein, homol 99.7 1E-17 3.5E-22 125.0 8.7 75 60-141 4-78 (88)
151 1fxl_A Paraneoplastic encephal 99.7 2.6E-17 9E-22 135.4 11.8 81 61-141 2-82 (167)
152 1b7f_A Protein (SXL-lethal pro 99.7 2E-17 6.7E-22 136.6 11.0 83 60-142 2-84 (168)
153 3zzy_A Polypyrimidine tract-bi 99.7 2.5E-17 8.4E-22 131.9 11.1 78 60-142 27-107 (130)
154 2dnl_A Cytoplasmic polyadenyla 99.7 1.4E-17 4.9E-22 130.4 9.1 79 59-140 6-87 (114)
155 1sjr_A Polypyrimidine tract-bi 99.7 1.7E-17 5.7E-22 137.8 9.9 80 59-142 44-125 (164)
156 2qfj_A FBP-interacting repress 99.7 3E-17 1E-21 141.1 11.4 84 59-142 123-206 (216)
157 2j8a_A Histone-lysine N-methyl 99.7 1.5E-17 5.2E-22 131.7 8.2 79 62-140 3-95 (136)
158 2e5i_A Heterogeneous nuclear r 99.7 6E-17 2E-21 128.9 11.3 75 62-142 26-103 (124)
159 2diu_A KIAA0430 protein; struc 99.7 4.6E-17 1.6E-21 122.1 9.6 74 60-143 7-86 (96)
160 2yh0_A Splicing factor U2AF 65 99.7 6.8E-17 2.3E-21 137.0 11.8 85 58-142 111-195 (198)
161 3d2w_A TAR DNA-binding protein 99.7 9.1E-17 3.1E-21 120.4 10.6 76 58-142 8-85 (89)
162 2g4b_A Splicing factor U2AF 65 99.7 4.4E-17 1.5E-21 135.2 9.7 80 60-139 93-172 (172)
163 2hzc_A Splicing factor U2AF 65 99.7 5.4E-17 1.9E-21 120.3 9.0 72 59-137 4-86 (87)
164 1l3k_A Heterogeneous nuclear r 99.7 6.5E-17 2.2E-21 137.0 10.6 84 57-141 9-92 (196)
165 1l3k_A Heterogeneous nuclear r 99.7 8.4E-17 2.9E-21 136.3 11.1 84 59-143 102-185 (196)
166 3tyt_A Heterogeneous nuclear r 99.7 9.2E-17 3.2E-21 138.7 11.3 77 60-141 3-80 (205)
167 4f02_A Polyadenylate-binding p 99.7 5.8E-17 2E-21 140.3 10.1 81 60-142 102-182 (213)
168 2cjk_A Nuclear polyadenylated 99.7 3.8E-17 1.3E-21 134.9 8.4 81 60-141 86-166 (167)
169 2qfj_A FBP-interacting repress 99.7 9.6E-17 3.3E-21 138.0 10.4 83 59-141 26-108 (216)
170 2bz2_A Negative elongation fac 99.7 8.9E-17 3.1E-21 127.4 9.4 77 58-142 36-112 (121)
171 1b7f_A Protein (SXL-lethal pro 99.7 1.9E-16 6.7E-21 130.6 11.1 80 59-138 87-168 (168)
172 1wf0_A TDP-43, TAR DNA-binding 99.7 8.6E-17 3E-21 119.8 7.3 77 59-142 3-79 (88)
173 2pe8_A Splicing factor 45; RRM 99.7 4E-16 1.4E-20 120.6 11.2 82 59-140 6-93 (105)
174 3md3_A Nuclear and cytoplasmic 99.7 2.3E-16 8E-21 129.6 10.4 80 62-142 1-80 (166)
175 1fxl_A Paraneoplastic encephal 99.7 3.1E-16 1.1E-20 129.0 10.3 80 59-138 86-167 (167)
176 2dit_A HIV TAT specific factor 99.7 8.4E-16 2.9E-20 119.9 11.8 81 57-141 11-102 (112)
177 3nmr_A Cugbp ELAV-like family 99.6 5E-16 1.7E-20 128.8 10.2 83 60-142 2-89 (175)
178 3nmr_A Cugbp ELAV-like family 99.6 5E-16 1.7E-20 128.9 9.7 79 60-139 94-175 (175)
179 3pgw_A U1-A; protein-RNA compl 99.6 8.9E-16 3.1E-20 137.8 11.9 83 57-142 5-91 (282)
180 2cjk_A Nuclear polyadenylated 99.6 4.4E-16 1.5E-20 128.5 8.9 79 60-140 2-80 (167)
181 1fje_B Nucleolin RBD12, protei 99.6 5.9E-16 2E-20 129.0 9.5 78 59-141 97-174 (175)
182 2adc_A Polypyrimidine tract-bi 99.6 5.9E-16 2E-20 135.4 9.9 79 58-141 31-110 (229)
183 3u1l_A PRE-mRNA-splicing facto 99.6 4.5E-16 1.6E-20 137.1 8.7 79 58-142 131-230 (240)
184 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-15 3.8E-20 130.7 10.7 78 61-140 109-186 (193)
185 3pgw_A U1-A; protein-RNA compl 99.6 3.7E-15 1.3E-19 133.7 13.7 77 58-139 204-281 (282)
186 2ghp_A U4/U6 snRNA-associated 99.6 1.6E-15 5.5E-20 136.8 11.0 82 59-141 208-291 (292)
187 3smz_A Protein raver-1, ribonu 99.6 5.1E-15 1.8E-19 132.9 12.0 83 60-142 94-176 (284)
188 1qm9_A Polypyrimidine tract-bi 99.6 1.9E-15 6.4E-20 128.6 7.9 77 61-142 3-80 (198)
189 1fje_B Nucleolin RBD12, protei 99.6 9.3E-16 3.2E-20 127.7 5.7 84 57-142 9-92 (175)
190 3smz_A Protein raver-1, ribonu 99.6 5.1E-15 1.8E-19 132.9 10.9 85 59-144 182-267 (284)
191 3v4m_A Splicing factor U2AF 65 99.6 1E-14 3.4E-19 112.7 10.0 82 59-140 3-96 (105)
192 3sde_A Paraspeckle component 1 99.6 6.2E-15 2.1E-19 131.4 10.1 77 58-140 19-95 (261)
193 2adc_A Polypyrimidine tract-bi 99.6 8.3E-15 2.8E-19 128.1 10.5 78 59-141 149-228 (229)
194 1qm9_A Polypyrimidine tract-bi 99.6 4.6E-15 1.6E-19 126.2 8.5 78 59-141 118-197 (198)
195 3tyt_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 128.0 8.5 78 59-138 121-204 (205)
196 3ue2_A Poly(U)-binding-splicin 99.6 8.8E-15 3E-19 115.4 8.6 81 60-140 19-108 (118)
197 1jmt_A Splicing factor U2AF 35 99.5 3.1E-15 1E-19 115.4 4.7 72 66-138 20-103 (104)
198 2g4b_A Splicing factor U2AF 65 99.5 1.9E-14 6.6E-19 119.1 9.7 75 60-141 3-88 (172)
199 2ghp_A U4/U6 snRNA-associated 99.5 1.9E-14 6.6E-19 129.7 9.9 82 60-142 116-198 (292)
200 2yh0_A Splicing factor U2AF 65 99.5 2.9E-14 9.9E-19 120.7 10.0 75 60-141 3-88 (198)
201 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.2E-18 126.6 10.3 81 60-141 95-179 (261)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.3E-13 8E-18 104.0 11.5 75 61-142 10-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 6.9E-14 2.3E-18 129.3 10.0 76 58-139 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 7.9E-13 2.7E-17 103.5 10.3 78 59-140 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 3.9E-12 1.3E-16 100.2 10.5 78 57-140 14-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1E-11 3.6E-16 92.2 9.0 74 61-143 7-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 8E-11 2.7E-15 87.8 5.2 71 60-139 14-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.6E-09 5.6E-14 93.8 10.4 80 61-140 124-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 1.8E-08 6.1E-13 76.8 8.9 74 59-138 19-97 (117)
210 1wey_A Calcipressin 1; structu 98.3 1.5E-06 5.1E-11 65.8 6.4 76 60-141 4-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.0 7.7E-05 2.6E-09 56.2 11.1 71 61-140 8-83 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.9 4.3E-05 1.5E-09 59.3 8.5 73 59-139 22-95 (119)
213 1uw4_A UPF3X; nonsense mediate 97.8 0.00011 3.7E-09 54.5 8.4 78 62-139 2-86 (91)
214 1whv_A Poly(A)-specific ribonu 97.8 0.0001 3.5E-09 54.9 8.1 56 60-124 15-70 (100)
215 3ctr_A Poly(A)-specific ribonu 97.5 0.0001 3.6E-09 55.0 4.9 54 62-124 7-60 (101)
216 3p3d_A Nucleoporin 53; structu 97.4 0.00026 9E-09 55.7 6.1 79 60-140 6-98 (132)
217 2l08_A Regulator of nonsense t 97.3 0.00059 2E-08 51.0 6.9 80 60-139 8-94 (97)
218 3pq1_A Poly(A) RNA polymerase; 96.6 0.001 3.5E-08 63.4 3.2 58 58-121 50-107 (464)
219 2i2y_A Fusion protein consists 96.1 0.0021 7.1E-08 51.5 1.9 40 100-140 10-50 (150)
220 2kn4_A Immunoglobulin G-bindin 95.9 0.0053 1.8E-07 49.3 3.7 34 91-126 3-36 (158)
221 4eyt_A Telomerase associated p 93.3 0.51 1.7E-05 34.4 8.0 71 59-137 10-87 (129)
222 2g0c_A ATP-dependent RNA helic 93.2 0.19 6.4E-06 35.2 5.7 68 63-139 2-75 (76)
223 3d45_A Poly(A)-specific ribonu 92.8 0.22 7.5E-06 48.0 7.4 55 61-124 440-494 (507)
224 3pgw_S U1-70K; protein-RNA com 90.9 1.9 6.4E-05 40.6 11.4 24 109-134 147-170 (437)
225 4e8u_A Putative uncharacterize 78.1 3.8 0.00013 33.4 5.6 58 61-121 12-81 (172)
226 3fry_A Probable copper-exporti 72.6 10 0.00035 25.1 6.0 55 61-122 6-60 (73)
227 3lpe_A Putative transcription 66.6 18 0.0006 26.0 6.4 35 87-126 39-73 (92)
228 3dxs_X Copper-transporting ATP 62.5 27 0.00093 22.7 6.6 56 62-123 4-63 (74)
229 2cu1_A Mitogen-activated prote 54.7 14 0.00049 27.1 4.0 64 68-140 23-87 (103)
230 1yg0_A COP associated protein; 52.7 38 0.0013 20.8 6.1 55 63-123 4-61 (66)
231 2l3m_A Copper-ION-binding prot 52.0 42 0.0014 21.1 7.3 56 62-123 7-66 (71)
232 4f25_A Polyadenylate-binding p 51.6 3.1 0.00011 30.9 0.0 18 60-77 96-113 (115)
233 2exu_A Transcription initiatio 51.5 32 0.0011 28.6 6.2 28 102-129 148-175 (200)
234 2xmw_A PACS-N, cation-transpor 51.3 42 0.0014 21.0 6.6 56 62-123 5-63 (71)
235 3ts2_A Protein LIN-28 homolog 50.9 3.1 0.00011 33.0 -0.1 28 76-111 2-29 (148)
236 3h7h_B Transcription elongatio 50.9 30 0.001 25.6 5.4 36 87-127 40-75 (106)
237 1q8l_A Copper-transporting ATP 50.1 54 0.0018 21.9 7.9 57 61-123 10-70 (84)
238 4a4j_A Pacszia, cation-transpo 49.3 27 0.00091 22.4 4.6 55 62-122 4-61 (69)
239 2kt2_A Mercuric reductase; nme 47.6 49 0.0017 20.7 6.8 54 63-122 3-59 (69)
240 2lfv_A Protein DAMX; cell divi 52.5 4.1 0.00014 30.5 0.0 66 60-130 24-91 (106)
241 1cpz_A Protein (COPZ); copper 45.3 52 0.0018 20.3 7.7 54 63-122 3-60 (68)
242 3j21_T 50S ribosomal protein L 44.6 47 0.0016 23.6 5.4 56 64-122 25-82 (86)
243 1osd_A MERP, hypothetical prot 44.1 57 0.002 20.4 7.3 56 62-123 5-64 (72)
244 3cjk_B Copper-transporting ATP 44.0 60 0.0021 20.7 6.5 55 63-123 5-63 (75)
245 4bby_A Alkyldihydroxyacetoneph 43.1 14 0.00049 36.4 3.3 55 68-123 350-408 (658)
246 2ofg_X Zinc-transporting ATPas 42.4 92 0.0031 22.3 7.4 56 62-123 10-69 (111)
247 1vd2_A Protein kinase C, IOTA 42.1 45 0.0015 23.9 5.0 53 64-123 17-74 (89)
248 2npt_B Mitogen-activated prote 41.8 42 0.0014 24.4 4.7 51 68-126 35-86 (100)
249 1yjr_A Copper-transporting ATP 41.1 66 0.0023 20.3 7.7 56 61-122 5-64 (75)
250 1kvi_A Copper-transporting ATP 40.9 71 0.0024 20.6 7.2 57 61-123 9-69 (79)
251 1y3j_A Copper-transporting ATP 40.9 56 0.0019 21.1 5.3 55 63-123 6-64 (77)
252 2g9o_A Copper-transporting ATP 40.7 52 0.0018 22.6 5.2 56 62-123 5-64 (90)
253 1aw0_A Menkes copper-transport 40.6 47 0.0016 20.8 4.7 56 62-123 5-64 (72)
254 1fvq_A Copper-transporting ATP 39.3 69 0.0024 20.0 5.8 55 63-123 5-62 (72)
255 1mwy_A ZNTA; open-faced beta-s 38.0 76 0.0026 20.1 8.0 56 62-123 5-62 (73)
256 3fut_A Dimethyladenosine trans 37.7 26 0.00089 30.4 3.8 32 61-93 110-141 (271)
257 2cfx_A HTH-type transcriptiona 37.5 1.3E+02 0.0045 22.7 7.7 47 75-125 78-124 (144)
258 2lsl_A Telomerase associated p 43.3 7.1 0.00024 28.6 0.0 65 60-124 17-98 (137)
259 1p6t_A Potential copper-transp 36.7 97 0.0033 23.0 6.7 55 63-123 77-135 (151)
260 3uzu_A Ribosomal RNA small sub 36.5 14 0.00046 32.3 1.7 33 62-94 115-147 (279)
261 3swz_A Steroid 17-alpha-hydrox 35.8 47 0.0016 30.4 5.5 58 64-131 17-78 (494)
262 2e7g_A Putative ribosome-bindi 35.3 70 0.0024 24.4 5.5 36 85-124 43-79 (129)
263 3bde_A MLL5499 protein; stress 35.0 1E+02 0.0035 23.0 6.3 56 63-118 23-86 (120)
264 2jrh_A Mitogen-activated prote 34.8 54 0.0018 23.5 4.3 63 68-139 19-82 (94)
265 1opz_A Potential copper-transp 34.6 85 0.0029 19.7 8.0 56 62-123 8-67 (76)
266 2qif_A Copper chaperone COPZ; 34.1 79 0.0027 19.1 6.6 54 63-122 5-62 (69)
267 2c60_A Human mitogen-activated 33.9 49 0.0017 24.4 4.0 51 68-126 46-97 (111)
268 2e5p_A Protein PHF1, PHD finge 33.9 22 0.00074 24.1 2.0 20 85-112 27-46 (68)
269 2w7a_A LINE-1 ORF1P; RNA-bindi 33.2 1E+02 0.0036 22.5 5.8 76 62-137 4-99 (100)
270 3u5e_X 60S ribosomal protein L 33.0 63 0.0021 25.3 4.8 55 65-122 82-138 (142)
271 3bb5_A Stress responsive alpha 32.3 1.4E+02 0.0047 22.2 6.7 57 63-119 23-90 (121)
272 2ew9_A Copper-transporting ATP 31.6 84 0.0029 23.2 5.5 56 62-123 82-141 (149)
273 4a17_R RPL23A, 60S ribosomal p 31.6 66 0.0022 25.4 4.8 55 65-122 90-146 (150)
274 3bn7_A Ferredoxin-like protein 31.3 1.6E+02 0.0053 21.9 6.8 55 63-117 23-90 (120)
275 1qyr_A KSGA, high level kasuga 30.3 33 0.0011 29.3 3.2 30 62-91 91-120 (252)
276 1vq8_S 50S ribosomal protein L 29.8 72 0.0024 22.6 4.3 53 64-119 24-78 (85)
277 1i4w_A Mitochondrial replicati 29.7 32 0.0011 31.2 3.1 23 62-84 143-165 (353)
278 2cs4_A Protein C12ORF2; GTP bi 29.2 26 0.00091 25.5 1.9 19 66-84 21-39 (95)
279 3e6i_A CYPIIE1, P450-J, cytoch 28.6 45 0.0016 30.2 4.0 49 65-122 20-71 (476)
280 2ldi_A Zinc-transporting ATPas 28.5 1E+02 0.0035 18.8 6.1 54 63-122 6-63 (71)
281 3iz5_X 60S ribosomal protein L 28.4 61 0.0021 25.7 4.1 54 66-122 93-148 (152)
282 2crl_A Copper chaperone for su 27.6 93 0.0032 21.8 4.8 54 63-123 22-76 (98)
283 3bgu_A Ferredoxin-like protein 27.6 1.3E+02 0.0046 22.1 5.9 55 63-118 24-88 (116)
284 2kyz_A Heavy metal binding pro 27.3 50 0.0017 20.7 3.0 53 63-122 4-56 (67)
285 3tbg_A Cytochrome P450 2D6; mo 27.1 37 0.0013 30.8 3.1 48 65-121 20-70 (479)
286 3tqs_A Ribosomal RNA small sub 27.1 18 0.0006 31.1 0.8 32 63-94 98-129 (255)
287 3ftd_A Dimethyladenosine trans 27.0 31 0.0011 29.3 2.4 29 62-90 96-124 (249)
288 1jww_A Potential copper-transp 26.8 1.3E+02 0.0043 19.2 5.4 55 63-123 6-64 (80)
289 2qyc_A Ferredoxin-like protein 26.2 1.8E+02 0.006 20.6 6.4 54 64-118 8-71 (103)
290 3bsu_A Ribonuclease H1, RNAse 26.0 1.2E+02 0.004 19.3 4.5 33 73-122 18-50 (53)
291 2m0o_A PHD finger protein 1; t 25.6 37 0.0013 23.6 2.0 20 85-112 44-63 (79)
292 2zkr_s 60S ribosomal protein L 25.6 95 0.0032 24.7 4.7 54 65-121 96-151 (156)
293 2kkh_A Putative heavy metal tr 25.0 1.6E+02 0.0056 19.9 8.4 56 62-123 18-77 (95)
294 2rop_A Copper-transporting ATP 24.5 2.3E+02 0.0078 22.4 7.3 56 62-123 124-183 (202)
295 1wvf_A 4-cresol dehydrogenase 24.0 38 0.0013 32.2 2.6 43 77-120 217-261 (520)
296 2e5q_A PHD finger protein 19; 23.7 15 0.00053 24.4 -0.2 10 103-112 35-44 (63)
297 1xn9_A 30S ribosomal protein S 23.6 89 0.003 22.9 4.0 48 71-119 28-80 (101)
298 2okq_A Hypothetical protein YB 23.5 1.6E+02 0.0053 22.9 5.5 45 78-122 50-109 (141)
299 2lea_A Serine/arginine-rich sp 23.5 17 0.00058 27.7 0.0 27 104-130 5-31 (135)
300 2cg4_A Regulatory protein ASNC 23.3 2.4E+02 0.0082 21.2 6.9 52 69-124 76-128 (152)
301 2yua_A Williams-beuren syndrom 23.3 29 0.001 25.0 1.3 20 66-85 22-41 (99)
302 2uuu_A Alkyldihydroxyacetoneph 23.1 44 0.0015 32.4 2.9 55 69-124 281-339 (584)
303 2e1c_A Putative HTH-type trans 22.8 2.7E+02 0.0094 21.7 7.7 51 68-123 94-144 (171)
304 2v94_A RPS24, 30S ribosomal pr 22.7 1.1E+02 0.0037 22.7 4.3 46 72-118 38-88 (107)
305 1i1g_A Transcriptional regulat 22.5 1.8E+02 0.0062 21.5 5.9 47 74-124 76-123 (141)
306 2f06_A Conserved hypothetical 22.5 2.4E+02 0.0084 21.0 6.9 25 103-128 111-135 (144)
307 2eqj_A Metal-response element- 22.4 46 0.0016 22.5 2.0 10 103-112 41-50 (66)
308 3fmb_A Dimeric protein of unkn 22.3 2.4E+02 0.0081 20.8 7.4 56 63-118 23-90 (118)
309 2yko_A LINE-1 ORF1P; RNA-bindi 22.2 2.4E+02 0.0083 23.8 6.9 79 61-139 52-150 (233)
310 2d8m_A DNA-repair protein XRCC 22.1 89 0.003 23.5 3.9 29 60-89 24-52 (129)
311 2cyy_A Putative HTH-type trans 22.0 2.6E+02 0.0088 21.1 7.7 53 68-125 74-126 (151)
312 1ywx_A 30S ribosomal protein S 22.0 1.1E+02 0.0037 22.5 4.2 47 71-118 28-79 (102)
313 1tr0_A Stable protein 1; plant 22.0 2.2E+02 0.0075 20.3 6.1 56 63-118 11-79 (108)
314 3lo3_A Uncharacterized conserv 21.8 1.7E+02 0.006 20.6 5.3 20 102-121 52-71 (94)
315 4hhu_A OR280; engineered prote 21.8 1.8E+02 0.0063 21.9 5.4 72 62-138 43-129 (170)
316 2ko4_A Mediator of RNA polymer 21.4 52 0.0018 23.1 2.1 19 66-84 29-48 (81)
317 3p8b_B Transcription antitermi 21.4 1E+02 0.0034 23.9 4.2 35 88-127 33-67 (152)
318 2ns6_A Mobilization protein A; 21.2 1.7E+02 0.0057 23.7 5.7 49 62-113 71-127 (185)
319 3ced_A Methionine import ATP-b 20.7 86 0.0029 22.5 3.4 55 71-125 30-87 (98)
320 3pm9_A Putative oxidoreductase 20.7 68 0.0023 30.1 3.6 53 70-123 195-251 (476)
321 3iwl_A Copper transport protei 20.4 1.7E+02 0.0058 18.4 5.4 53 62-122 4-57 (68)
322 3pm0_A Cypib1, cytochrome P450 20.2 1.2E+02 0.0041 27.6 5.2 48 65-121 19-68 (507)
323 2qrr_A Methionine import ATP-b 20.2 1.8E+02 0.006 20.7 5.1 62 63-124 25-88 (101)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=4.4e-22 Score=190.62 Aligned_cols=85 Identities=25% Similarity=0.513 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
+.++|||+|||+.||+++|++||.+||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|||++|+|+.|.|+|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 043443 140 ESRKR 144 (299)
Q Consensus 140 ~~~~~ 144 (299)
.....
T Consensus 181 ~~~~~ 185 (437)
T 3pgw_S 181 GRTVK 185 (437)
T ss_pred CCCCC
Confidence 75543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=154.90 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=78.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
..++|||+|||.++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 043443 140 E 140 (299)
Q Consensus 140 ~ 140 (299)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 3
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=152.23 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCC-----e
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG-----R 131 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G-----r 131 (299)
.....++|||+|||+++++++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.||+++|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999875 899999999999999999999999999 9
Q ss_pred eEEEEEccc
Q 043443 132 EISVVLAAE 140 (299)
Q Consensus 132 ~i~V~~a~~ 140 (299)
.|.|+++++
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999975
No 4
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=148.96 Aligned_cols=84 Identities=27% Similarity=0.452 Sum_probs=79.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcc
Q 043443 136 VLAA 139 (299)
Q Consensus 136 ~~a~ 139 (299)
+|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 5
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.3e-21 Score=152.31 Aligned_cols=88 Identities=30% Similarity=0.449 Sum_probs=82.0
Q ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee
Q 043443 53 YGRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 132 (299)
Q Consensus 53 ~~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~ 132 (299)
.....+.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+ +|+|+.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3455667789999999999999999999999999999999999998999999999999999999999999998 899999
Q ss_pred EEEEEcccC
Q 043443 133 ISVVLAAES 141 (299)
Q Consensus 133 i~V~~a~~~ 141 (299)
|.|+++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999999764
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=3.7e-21 Score=150.73 Aligned_cols=89 Identities=28% Similarity=0.571 Sum_probs=82.7
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 043443 135 VVLAAESRK 143 (299)
Q Consensus 135 V~~a~~~~~ 143 (299)
|.|++.+..
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987544
No 7
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.86 E-value=4.3e-22 Score=156.64 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=65.7
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee-
Q 043443 54 GRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE- 132 (299)
Q Consensus 54 ~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~- 132 (299)
++......++|||+|||+++++++|+++|.+||+|+.|.|+.+ |||||+|++.++|++||+.||+++|+|+.
T Consensus 9 gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 9 GPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp --------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 3334456789999999999999999999999999999999865 89999999999999999999999999998
Q ss_pred ----EEEEEcc
Q 043443 133 ----ISVVLAA 139 (299)
Q Consensus 133 ----i~V~~a~ 139 (299)
|.|..+.
T Consensus 82 ~~~~i~v~~~~ 92 (115)
T 3beg_B 82 ETAYIRVKVDG 92 (115)
T ss_dssp CCCBCEEEECC
T ss_pred eeEEEEeccCC
Confidence 5555543
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=150.06 Aligned_cols=86 Identities=30% Similarity=0.508 Sum_probs=81.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45667999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
+++++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998654
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=148.88 Aligned_cols=88 Identities=25% Similarity=0.362 Sum_probs=82.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
......++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 043443 136 VLAAESRK 143 (299)
Q Consensus 136 ~~a~~~~~ 143 (299)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987544
No 10
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=151.83 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
.+..+|||+||++.+++++|+++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||+.|||+.|+|+.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7543
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-21 Score=146.01 Aligned_cols=85 Identities=31% Similarity=0.445 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEccc
Q 043443 136 VLAAE 140 (299)
Q Consensus 136 ~~a~~ 140 (299)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.5e-21 Score=146.09 Aligned_cols=88 Identities=24% Similarity=0.483 Sum_probs=81.4
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 54 GRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 54 ~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
......+.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678899999999999999999999999999999999987 88999999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 043443 134 SVVLAAESR 142 (299)
Q Consensus 134 ~V~~a~~~~ 142 (299)
.|.+++++.
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998754
No 13
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=3.9e-21 Score=150.72 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=81.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043443 137 LAAESRK 143 (299)
Q Consensus 137 ~a~~~~~ 143 (299)
|++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9986543
No 14
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.7e-21 Score=148.31 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=78.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||..+++++|+++|.+||.|+.|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44567899999999999999999999999999999999887 58899999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997543
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=148.91 Aligned_cols=87 Identities=39% Similarity=0.663 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
.+++...
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998644
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.5e-21 Score=147.58 Aligned_cols=86 Identities=36% Similarity=0.501 Sum_probs=80.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 043443 138 AAESRK 143 (299)
Q Consensus 138 a~~~~~ 143 (299)
+++...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987543
No 17
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=148.45 Aligned_cols=86 Identities=23% Similarity=0.419 Sum_probs=79.4
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCC--EeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc----ee
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGV--VRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK----RF 128 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~--I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~----~l 128 (299)
...+....+|||+|||+.+|+++|+++|++||. |..|.|+.|+.++.++|||||+|.+.++|++||+.||+. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 445677899999999999999999999999995 678999999999999999999999999999999999997 58
Q ss_pred CCeeEEEEEccc
Q 043443 129 AGREISVVLAAE 140 (299)
Q Consensus 129 ~Gr~i~V~~a~~ 140 (299)
+|+.|.|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999974
No 18
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.3e-21 Score=147.93 Aligned_cols=89 Identities=24% Similarity=0.381 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC------Ccee
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN------GKRF 128 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln------g~~l 128 (299)
.....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|| +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3455668899999999999999999999999999999999999899999999999999999999999999 9999
Q ss_pred CCeeEEEEEcccCCC
Q 043443 129 AGREISVVLAAESRK 143 (299)
Q Consensus 129 ~Gr~i~V~~a~~~~~ 143 (299)
+|+.|.|.++.++..
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 999999999986543
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-21 Score=147.79 Aligned_cols=85 Identities=34% Similarity=0.560 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCC
Q 043443 138 AAESR 142 (299)
Q Consensus 138 a~~~~ 142 (299)
++...
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 98654
No 20
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=144.50 Aligned_cols=87 Identities=30% Similarity=0.460 Sum_probs=79.1
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.....+.++|||+|||..+++++|+++|.+||.|..|.|+.+.. .+++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999998753 3789999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 043443 135 VVLAAESRK 143 (299)
Q Consensus 135 V~~a~~~~~ 143 (299)
|.++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999987544
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=9.9e-22 Score=148.22 Aligned_cols=84 Identities=23% Similarity=0.425 Sum_probs=77.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC-CceeCCeeEEEEEc
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN-GKRFAGREISVVLA 138 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln-g~~l~Gr~i~V~~a 138 (299)
+.+|||+|||..+|+++|+++|++|| +|..|.|+.++.++.++|||||+|.+.++|++||+.|+ +..|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred ccCCCC
Q 043443 139 AESRKR 144 (299)
Q Consensus 139 ~~~~~~ 144 (299)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876544
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.9e-21 Score=144.83 Aligned_cols=86 Identities=31% Similarity=0.587 Sum_probs=80.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 043443 138 AAESRK 143 (299)
Q Consensus 138 a~~~~~ 143 (299)
++.+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987543
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=146.52 Aligned_cols=89 Identities=34% Similarity=0.571 Sum_probs=82.4
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccC-CCCCCCccEEEEEEcCHHHHHHHHHhh-CCceeCCee
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKD-YYTGEPRGFAFVQFVDPYEAAEAQHHM-NGKRFAGRE 132 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d-~~~g~~~g~afVeF~~~~~A~~Al~~l-ng~~l~Gr~ 132 (299)
.......++|||+|||..+++++|+++|.+||.|..|.|+.+ +.++.++|||||+|.+.++|++||+.| |+..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567899999999999999999999999999999999998 788999999999999999999999999 999999999
Q ss_pred EEEEEcccCCC
Q 043443 133 ISVVLAAESRK 143 (299)
Q Consensus 133 i~V~~a~~~~~ 143 (299)
|.|.|++....
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987543
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=146.95 Aligned_cols=86 Identities=30% Similarity=0.466 Sum_probs=79.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++..++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557899999999999999999999999999999999987 7889999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 043443 136 VLAAESRK 143 (299)
Q Consensus 136 ~~a~~~~~ 143 (299)
.+++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987543
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=144.52 Aligned_cols=86 Identities=30% Similarity=0.529 Sum_probs=80.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999 99999999999999
Q ss_pred EcccCCC
Q 043443 137 LAAESRK 143 (299)
Q Consensus 137 ~a~~~~~ 143 (299)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9986543
No 26
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.1e-21 Score=148.66 Aligned_cols=89 Identities=27% Similarity=0.438 Sum_probs=82.4
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEe--------EEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVR--------DVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK 126 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~--------~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~ 126 (299)
...+.+.++|||+|||..+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34566789999999999999999999999999999 6999999889999999999999999999999999999
Q ss_pred eeCCeeEEEEEcccCCC
Q 043443 127 RFAGREISVVLAAESRK 143 (299)
Q Consensus 127 ~l~Gr~i~V~~a~~~~~ 143 (299)
.|+|+.|.|.+++.+..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999987543
No 27
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=148.13 Aligned_cols=89 Identities=27% Similarity=0.414 Sum_probs=82.3
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 54 GRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 54 ~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
......+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+. |+..|+|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 344566789999999999999999999999999999999999988999999999999999999999998 9999999999
Q ss_pred EEEEcccCCC
Q 043443 134 SVVLAAESRK 143 (299)
Q Consensus 134 ~V~~a~~~~~ 143 (299)
.|.++.++..
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999987544
No 28
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=145.05 Aligned_cols=86 Identities=20% Similarity=0.369 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCC-CCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYT-GEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~-g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
....+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3445678999999999999999999999999 999999999887 899999999999999999999 8999999999999
Q ss_pred EEEcccCCC
Q 043443 135 VVLAAESRK 143 (299)
Q Consensus 135 V~~a~~~~~ 143 (299)
|+++..+..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987543
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.1e-20 Score=139.25 Aligned_cols=81 Identities=28% Similarity=0.441 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEccc
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~ 140 (299)
+++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred C
Q 043443 141 S 141 (299)
Q Consensus 141 ~ 141 (299)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=6.2e-21 Score=151.87 Aligned_cols=87 Identities=23% Similarity=0.375 Sum_probs=81.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043443 137 LAAESRK 143 (299)
Q Consensus 137 ~a~~~~~ 143 (299)
|+..+..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9986543
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=8.9e-21 Score=140.90 Aligned_cols=83 Identities=28% Similarity=0.540 Sum_probs=76.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 32
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.7e-20 Score=144.18 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=78.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999989999999999999999999999 899999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998643
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=9.6e-21 Score=140.13 Aligned_cols=82 Identities=37% Similarity=0.522 Sum_probs=78.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|||..|+|+.|.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 043443 138 AA 139 (299)
Q Consensus 138 a~ 139 (299)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=142.22 Aligned_cols=83 Identities=31% Similarity=0.506 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCC
Q 043443 140 ESR 142 (299)
Q Consensus 140 ~~~ 142 (299)
.+.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.1e-20 Score=145.87 Aligned_cols=88 Identities=26% Similarity=0.445 Sum_probs=81.7
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee---CCe
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF---AGR 131 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l---~Gr 131 (299)
...+.+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..| .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556778999999999999999999999999999999999998999999999999999999999999999988 899
Q ss_pred eEEEEEcccCC
Q 043443 132 EISVVLAAESR 142 (299)
Q Consensus 132 ~i~V~~a~~~~ 142 (299)
.|.|.++....
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 99999998654
No 36
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=142.34 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=78.6
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.......++|||+|||..+++++|+++|.+||.|..|.|+.+..+ .+|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345567899999999999999999999999999999999987533 689999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 043443 135 VVLAAESRK 143 (299)
Q Consensus 135 V~~a~~~~~ 143 (299)
|.+++....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999987543
No 37
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=7.4e-21 Score=143.80 Aligned_cols=85 Identities=31% Similarity=0.427 Sum_probs=77.8
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.......++|||+|||..+++++|+++|.+||+|..|.|+.++. +.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34456678999999999999999999999999999999999875 88999999999999999999999999999999999
Q ss_pred EEEccc
Q 043443 135 VVLAAE 140 (299)
Q Consensus 135 V~~a~~ 140 (299)
|.+++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999863
No 38
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-20 Score=143.19 Aligned_cols=84 Identities=29% Similarity=0.512 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....+.++|||+|||.++++++|+++|.+||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999754 457899999999999999999999999999999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
+|++...
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9998654
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.8e-20 Score=143.26 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=79.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCC---eeE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG---REI 133 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G---r~i 133 (299)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999987 78899999999999999999999999999998 999
Q ss_pred EEEEcccCCC
Q 043443 134 SVVLAAESRK 143 (299)
Q Consensus 134 ~V~~a~~~~~ 143 (299)
.|.+++....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987544
No 40
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.9e-20 Score=154.62 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=80.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||..+++++|+++|.+||+|+.|.|+.++.++.+++||||+|.+.++|++||+.||+..|+|+.|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 043443 138 AAESRK 143 (299)
Q Consensus 138 a~~~~~ 143 (299)
++....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 986443
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=2.6e-20 Score=141.32 Aligned_cols=83 Identities=24% Similarity=0.366 Sum_probs=79.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEccc
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~ 140 (299)
.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 043443 141 SRK 143 (299)
Q Consensus 141 ~~~ 143 (299)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 554
No 42
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=9.4e-21 Score=152.10 Aligned_cols=86 Identities=31% Similarity=0.473 Sum_probs=81.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||.++++++|+++|.+||+|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
|++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998654
No 43
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.3e-21 Score=144.45 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=77.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|||+.+++++|+++|.+||.|..|.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred ccc
Q 043443 138 AAE 140 (299)
Q Consensus 138 a~~ 140 (299)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 875
No 44
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=142.70 Aligned_cols=83 Identities=25% Similarity=0.436 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEE-EeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDV-YLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v-~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
+.++|||+|||..+++++|+++|.+||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
.++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8654
No 45
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=144.76 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=80.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998653
No 46
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=146.82 Aligned_cols=84 Identities=33% Similarity=0.584 Sum_probs=79.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||.++++++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred cccCC
Q 043443 138 AAESR 142 (299)
Q Consensus 138 a~~~~ 142 (299)
++...
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98643
No 47
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=3.1e-20 Score=144.35 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=81.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998654
No 48
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=2.7e-20 Score=143.83 Aligned_cols=82 Identities=26% Similarity=0.434 Sum_probs=77.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||+.+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred Ecc
Q 043443 137 LAA 139 (299)
Q Consensus 137 ~a~ 139 (299)
+++
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=148.66 Aligned_cols=82 Identities=37% Similarity=0.524 Sum_probs=77.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+..+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ec
Q 043443 137 LA 138 (299)
Q Consensus 137 ~a 138 (299)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=4.3e-21 Score=144.12 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=72.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCC--CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFG--VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G--~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
.+|||+|||+++++++|+++|.+|| .|..|.|+.++.++.++|||||+|.+.++|++||+.|||.+|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 043443 140 ESRK 143 (299)
Q Consensus 140 ~~~~ 143 (299)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 51
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=139.25 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=73.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeC--CeeEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA--GREIS 134 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~--Gr~i~ 134 (299)
...+.++|||+|||.++++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|+ |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456789999999999999999999999999999999864 689999999999999999999999999 99999
Q ss_pred EEEcccCC
Q 043443 135 VVLAAESR 142 (299)
Q Consensus 135 V~~a~~~~ 142 (299)
|+|++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998643
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=142.20 Aligned_cols=85 Identities=21% Similarity=0.468 Sum_probs=78.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCC---CCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYY---TGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~---~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999998776 5688999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 043443 136 VLAAESRK 143 (299)
Q Consensus 136 ~~a~~~~~ 143 (299)
.+++....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99986543
No 53
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=7.2e-21 Score=143.85 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=75.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||+.+++++|+++|.+||.|..|.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999998888888888999999999999999999999999999999999999997
Q ss_pred c
Q 043443 139 A 139 (299)
Q Consensus 139 ~ 139 (299)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 6
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=149.73 Aligned_cols=87 Identities=30% Similarity=0.459 Sum_probs=81.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||.++++++|+++|..||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 043443 137 LAAESRK 143 (299)
Q Consensus 137 ~a~~~~~ 143 (299)
+++....
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987544
No 55
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=8.2e-20 Score=143.69 Aligned_cols=83 Identities=25% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||+++++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ecc
Q 043443 137 LAA 139 (299)
Q Consensus 137 ~a~ 139 (299)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=138.13 Aligned_cols=83 Identities=20% Similarity=0.462 Sum_probs=77.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCC-CccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGE-PRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~-~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
..++|||+|||.++++++|+++|.+||.|..|.|+.+..++. .+|||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999998876655 8999999999999999999999999999999999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 57
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=139.92 Aligned_cols=87 Identities=26% Similarity=0.432 Sum_probs=79.4
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||. ++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445667899999999999999999999999999999999998899999999999999999999998 57899999999
Q ss_pred EEEcccCCC
Q 043443 135 VVLAAESRK 143 (299)
Q Consensus 135 V~~a~~~~~ 143 (299)
|.++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987543
No 58
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=141.49 Aligned_cols=83 Identities=25% Similarity=0.388 Sum_probs=79.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEe-EEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee----E
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVR-DVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE----I 133 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~-~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~----i 133 (299)
.+.++|||+|||.++++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEEcccC
Q 043443 134 SVVLAAES 141 (299)
Q Consensus 134 ~V~~a~~~ 141 (299)
.|+|++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999864
No 59
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.1e-19 Score=139.77 Aligned_cols=79 Identities=29% Similarity=0.474 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||.++++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999987 35999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043443 138 AAESRKR 144 (299)
Q Consensus 138 a~~~~~~ 144 (299)
+++....
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9875543
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=7.9e-21 Score=145.65 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=78.7
Q ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCC-e
Q 043443 59 QNHGSLLVRNIPL------DCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG-R 131 (299)
Q Consensus 59 ~~~~~l~V~nLp~------~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G-r 131 (299)
...++|||+|||+ .+++++|+++|.+||.|..|.|+.++.|+.++|||||+|.+.++|++||+.|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eEEEEEcccC
Q 043443 132 EISVVLAAES 141 (299)
Q Consensus 132 ~i~V~~a~~~ 141 (299)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999753
No 61
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3.8e-20 Score=145.44 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEccc
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~ 140 (299)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.||+.||+.+|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999875 44789999999999999999999999999999999999986
Q ss_pred CCC
Q 043443 141 SRK 143 (299)
Q Consensus 141 ~~~ 143 (299)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 62
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=141.04 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=78.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeE--------EEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRD--------VYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF 128 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~--------v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l 128 (299)
.....++|||+|||.++++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|+.||+.|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCeeEEEEEcc
Q 043443 129 AGREISVVLAA 139 (299)
Q Consensus 129 ~Gr~i~V~~a~ 139 (299)
+|+.|.|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 63
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-20 Score=141.59 Aligned_cols=83 Identities=29% Similarity=0.509 Sum_probs=76.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeE-EEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRD-VYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~-v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
.....++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .++.++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 4456789999999999999999999999999987 888888 7899999999999999999999997 999999999999
Q ss_pred EEcccC
Q 043443 136 VLAAES 141 (299)
Q Consensus 136 ~~a~~~ 141 (299)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 998753
No 64
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.3e-20 Score=152.33 Aligned_cols=88 Identities=42% Similarity=0.698 Sum_probs=81.9
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCC
Q 043443 136 VLAAESRK 143 (299)
Q Consensus 136 ~~a~~~~~ 143 (299)
.|++....
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99986543
No 65
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=145.64 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=77.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCE-eEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVV-RDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I-~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
...+.++|||+|||+.+++++|+++|.+||.| ..|.|+.++ ++.++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999998 899999999999999999999986 999999999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997643
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=5.6e-20 Score=138.10 Aligned_cols=83 Identities=29% Similarity=0.480 Sum_probs=77.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999874 788899999999999999999999999999999999999
Q ss_pred cccCC
Q 043443 138 AAESR 142 (299)
Q Consensus 138 a~~~~ 142 (299)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98654
No 67
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=142.99 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=74.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|||+++|+++|+++|.+||. +.|.|+.++ +++++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 455689999999999999999999999995 499999987 89999999999999999999995 799999999999999
Q ss_pred cccC
Q 043443 138 AAES 141 (299)
Q Consensus 138 a~~~ 141 (299)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8753
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=8.7e-20 Score=136.10 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999999999889999999999999999999999 899999999999999997
Q ss_pred cC
Q 043443 140 ES 141 (299)
Q Consensus 140 ~~ 141 (299)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-20 Score=142.49 Aligned_cols=85 Identities=14% Similarity=0.291 Sum_probs=78.6
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 54 GRRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 54 ~~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
.-..+....+|||+|||+++|+++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|+.||. ||+..|+|+.|
T Consensus 4 ~~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 4 ILKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp CCSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred cccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 334556678999999999999999999999999999999999886 8999999999999999999999 89999999999
Q ss_pred EEEEccc
Q 043443 134 SVVLAAE 140 (299)
Q Consensus 134 ~V~~a~~ 140 (299)
.|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9999874
No 70
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.2e-19 Score=135.04 Aligned_cols=82 Identities=29% Similarity=0.515 Sum_probs=76.1
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
..+.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345677899999999999999999999999999999999998899999999999999999999996 5889999999999
Q ss_pred EEc
Q 043443 136 VLA 138 (299)
Q Consensus 136 ~~a 138 (299)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 885
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=142.85 Aligned_cols=84 Identities=30% Similarity=0.468 Sum_probs=79.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccC
Q 043443 138 AAES 141 (299)
Q Consensus 138 a~~~ 141 (299)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9764
No 72
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=137.25 Aligned_cols=80 Identities=26% Similarity=0.291 Sum_probs=74.7
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 60 NHGSLLVRNIPLDCRPEELR----APFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
+.++|||+|||+.+++++|+ ++|.+||+|..|.|+.++.+ ++||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45799999999999999999 99999999999999988655 789999999999999999999999999999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
+++++..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9998643
No 73
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=6e-20 Score=145.01 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=76.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---EeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGV---VRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~---I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
...+.++|||+|||+++|+++|+++|..||. |..|.|+.++. ++++|||||+|.+.++|++||+ ||++.|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 4456789999999999999999999999999 89999998876 8999999999999999999999 99999999999
Q ss_pred EEEEcccC
Q 043443 134 SVVLAAES 141 (299)
Q Consensus 134 ~V~~a~~~ 141 (299)
.|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998643
No 74
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=142.79 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=77.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHhcCCCEeEEEeccCCCCC---CCccEEEEEEcCHHHHHHHHHhhCCceeCC
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELR---APFERFGVVRDVYLPKDYYTG---EPRGFAFVQFVDPYEAAEAQHHMNGKRFAG 130 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~---~~F~~~G~I~~v~i~~d~~~g---~~~g~afVeF~~~~~A~~Al~~lng~~l~G 130 (299)
.....++|||+|||+.+++++|+ ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34557899999999999999999 999999999999999887644 456999999999999999999999999999
Q ss_pred eeEEEEEcccCC
Q 043443 131 REISVVLAAESR 142 (299)
Q Consensus 131 r~i~V~~a~~~~ 142 (299)
+.|.|++++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998754
No 75
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=3.4e-20 Score=150.19 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---EeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGV---VRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 132 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~---I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~ 132 (299)
....+.++|||+|||+++|+++|+++|.+||. |..|.|+.++. +.++|||||+|.+.++|++||+ ||+.+|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34556789999999999999999999999999 88999999876 9999999999999999999999 9999999999
Q ss_pred EEEEEccc
Q 043443 133 ISVVLAAE 140 (299)
Q Consensus 133 i~V~~a~~ 140 (299)
|.|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999864
No 76
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=7.1e-20 Score=151.74 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=77.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC--CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFG--VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G--~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...++|||+|||+++++++|+++|.+|| .|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99754
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7e-20 Score=140.80 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=79.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCce-eCCeeEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFER-FGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKR-FAGREISV 135 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~-~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~-l~Gr~i~V 135 (299)
..+.++|||+|||.++++++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
.++..+.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997644
No 78
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=5.1e-19 Score=149.52 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=78.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||+.+++++|+++|.+||+|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 8643
No 79
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.1e-19 Score=151.68 Aligned_cols=87 Identities=23% Similarity=0.393 Sum_probs=80.7
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
.|+..+.
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 9998643
No 80
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=141.54 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC--CceeCCeeEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN--GKRFAGREISV 135 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln--g~~l~Gr~i~V 135 (299)
..+.++|||+|||+.+++++|+++|++||+|+.|.|+.+ +|||||+|++.++|+.||+.|+ +.+|+|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999999875 6999999999999999999886 47899999999
Q ss_pred EEcccCCCC
Q 043443 136 VLAAESRKR 144 (299)
Q Consensus 136 ~~a~~~~~~ 144 (299)
+|++.+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876544
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=139.73 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCC-EeEEEec-cCCCCCCCccEEEEEEcCHHHHHHHHHhhC--CceeCCeeE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGV-VRDVYLP-KDYYTGEPRGFAFVQFVDPYEAAEAQHHMN--GKRFAGREI 133 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~-I~~v~i~-~d~~~g~~~g~afVeF~~~~~A~~Al~~ln--g~~l~Gr~i 133 (299)
..+.++|||+|||+.+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|+.||+.|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 788888999999999999999999999996 589999999
Q ss_pred EEEEcccCCC
Q 043443 134 SVVLAAESRK 143 (299)
Q Consensus 134 ~V~~a~~~~~ 143 (299)
.|.|+++...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987554
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=134.94 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=77.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||+.+++++|+++|.+| .|..|.|+.+ .++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999998 789999999999999999999999 99999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998653
No 83
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8e-20 Score=142.97 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=77.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999989999999999999999999999 89999999999999999
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
+..
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 763
No 84
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9e-20 Score=140.43 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc--eeCCeeEE
Q 043443 58 EQNHGSLLVRNIPL-DCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK--RFAGREIS 134 (299)
Q Consensus 58 ~~~~~~l~V~nLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~--~l~Gr~i~ 134 (299)
..+.++|||+|||+ .+++++|+++|.+||.|..|.|+.+ ++||||+|++.++|+.||+.||+. +|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999876 589999999999999999999864 59999999
Q ss_pred EEEcccC
Q 043443 135 VVLAAES 141 (299)
Q Consensus 135 V~~a~~~ 141 (299)
|++++..
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999854
No 85
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=136.68 Aligned_cols=81 Identities=25% Similarity=0.470 Sum_probs=73.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568999999999999999999999999987 45555 578899999999999999999999999999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
+++++
T Consensus 87 ~a~~~ 91 (101)
T 2fc9_A 87 LQGPR 91 (101)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 99864
No 86
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-20 Score=148.59 Aligned_cols=85 Identities=26% Similarity=0.408 Sum_probs=79.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeE--EEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc----eeCC
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRD--VYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK----RFAG 130 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~--v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~----~l~G 130 (299)
.+....+|||+|||+++++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+. +|++||+.||+. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999999999999999999999 999999999999 9999
Q ss_pred eeEEEEEcccCC
Q 043443 131 REISVVLAAESR 142 (299)
Q Consensus 131 r~i~V~~a~~~~ 142 (299)
+.|.|+++++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998643
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-20 Score=142.65 Aligned_cols=85 Identities=33% Similarity=0.565 Sum_probs=79.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043443 139 AESRK 143 (299)
Q Consensus 139 ~~~~~ 143 (299)
.....
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 86543
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=9.3e-19 Score=138.98 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=79.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|||..+++++|+++|.+||+|..|.|+.+. ++.++|||||+|.+.++|+.||+.||+..|+|+.|.|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 043443 138 AAESRK 143 (299)
Q Consensus 138 a~~~~~ 143 (299)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987544
No 89
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=2.5e-19 Score=139.41 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=76.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.| +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3445789999999999999999999999999999999999889999999999999999999999976 599999999999
Q ss_pred EcccCCC
Q 043443 137 LAAESRK 143 (299)
Q Consensus 137 ~a~~~~~ 143 (299)
++.....
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9986543
No 90
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-20 Score=146.27 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||+++++++|+++|.+||.|..|.++.+..++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999886666666789999999999999999999999 99999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99754
No 91
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=136.60 Aligned_cols=80 Identities=29% Similarity=0.532 Sum_probs=74.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||+|..|.|+.+ ++||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4456789999999999999999999999999999999865 6999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
+++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998643
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-19 Score=135.20 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=72.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhh--CCceeCCeeEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM--NGKRFAGREIS 134 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~l--ng~~l~Gr~i~ 134 (299)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|++.++|+.||+.| ++.+|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998865 699999999999999999977 46789999999
Q ss_pred EEEcccCCC
Q 043443 135 VVLAAESRK 143 (299)
Q Consensus 135 V~~a~~~~~ 143 (299)
|+|++.+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999986544
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=9.3e-20 Score=131.75 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=72.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
+|||+|||.++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9999999999999875
No 94
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-19 Score=137.21 Aligned_cols=86 Identities=24% Similarity=0.432 Sum_probs=79.0
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee------
Q 043443 55 RRKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF------ 128 (299)
Q Consensus 55 ~~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l------ 128 (299)
...+.+.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.|||..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3455678999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred --CCeeEEEEEcccC
Q 043443 129 --AGREISVVLAAES 141 (299)
Q Consensus 129 --~Gr~i~V~~a~~~ 141 (299)
.++.|.|.|+.+.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999999753
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=140.26 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=78.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
+.++|||+|||+++++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 468999999999999999999999999999999999988999999999999999999999997 9999999999999998
Q ss_pred cCCC
Q 043443 140 ESRK 143 (299)
Q Consensus 140 ~~~~ 143 (299)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7543
No 96
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-20 Score=136.85 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999987765
Q ss_pred c
Q 043443 139 A 139 (299)
Q Consensus 139 ~ 139 (299)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=130.91 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhh-CCceeCCeeEE
Q 043443 56 RKEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM-NGKRFAGREIS 134 (299)
Q Consensus 56 ~~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~l-ng~~l~Gr~i~ 134 (299)
..+...++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.| |+..|+|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34556789999999999999999999999999999999875 699999999999999999999 99999999999
Q ss_pred EEEcc
Q 043443 135 VVLAA 139 (299)
Q Consensus 135 V~~a~ 139 (299)
|+|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=132.81 Aligned_cols=78 Identities=23% Similarity=0.440 Sum_probs=72.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||.++++++|+++|.+||+|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567899999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred cccCCC
Q 043443 138 AAESRK 143 (299)
Q Consensus 138 a~~~~~ 143 (299)
++.+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 99
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=134.86 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||+.+++++|+++|.+||.|. +.++.+ .++|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999996 666543 678999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998653
No 100
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=135.77 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCce--eCCeeEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKR--FAGREISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~--l~Gr~i~V~ 136 (299)
.+..+|||+|||..+|+++|.++|.+||.|+.|.|+.. +|||||+|++.++|++||+.||+.. |.|+.|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45789999999999999999999999999999999854 6999999999999999999999875 789999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99864
No 101
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=4e-19 Score=146.72 Aligned_cols=85 Identities=44% Similarity=0.731 Sum_probs=80.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043443 139 AESRK 143 (299)
Q Consensus 139 ~~~~~ 143 (299)
++...
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 102
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=135.75 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=75.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+|+ .|.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456678999999999999999999999874 56677777788999999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998643
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=136.38 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc--eeCCeeEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK--RFAGREISV 135 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~--~l~Gr~i~V 135 (299)
..+..+|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|++.++|++||+.||+. .|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 455789999999999999999999999999999998864 699999999999999999988764 599999999
Q ss_pred EEcccCCC
Q 043443 136 VLAAESRK 143 (299)
Q Consensus 136 ~~a~~~~~ 143 (299)
+|++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986543
No 104
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.1e-19 Score=131.96 Aligned_cols=79 Identities=30% Similarity=0.505 Sum_probs=72.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 445678999999999999999999999999999999984 499999999999999999999999999999999
Q ss_pred EcccCCC
Q 043443 137 LAAESRK 143 (299)
Q Consensus 137 ~a~~~~~ 143 (299)
+++++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9986543
No 105
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=138.96 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=74.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCC-CCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDY-YTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~-~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
....++|||+|||.++++++|+++|.+|| |..|.|+.++ .++.++|||||+|.+.++|++|| .|||..|+|+.|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45578999999999999999999999999 9999999987 68999999999999999999999 899999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
+++..
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99764
No 106
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=3.3e-19 Score=141.43 Aligned_cols=81 Identities=25% Similarity=0.515 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .||+..|+|+.|.|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999997
Q ss_pred cC
Q 043443 140 ES 141 (299)
Q Consensus 140 ~~ 141 (299)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=2.8e-19 Score=139.81 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
..++|||+|||+++++++|+++|.+|| +|..|.|+.+ .++|||||+|.+.++|++||+.|||.+|+|+.|.|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457999999999999999999999999 9999988643 46899999999999999999999999999999999998
Q ss_pred cc
Q 043443 139 AE 140 (299)
Q Consensus 139 ~~ 140 (299)
+.
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=138.21 Aligned_cols=83 Identities=31% Similarity=0.501 Sum_probs=76.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999874 3488999999999999999999999999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
+++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=140.15 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=73.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCC--ceeCCeeEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG--KRFAGREISV 135 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng--~~l~Gr~i~V 135 (299)
..+..+|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|++.++|++||+.|++ .+|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999876 69999999999999999999884 6899999999
Q ss_pred EEcccCCCC
Q 043443 136 VLAAESRKR 144 (299)
Q Consensus 136 ~~a~~~~~~ 144 (299)
++++.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999875543
No 110
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=1.9e-19 Score=158.24 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=77.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC--CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFG--VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G--~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..++|||+||+++||+++|+++|.+|| .|+.|.|+.++.+++++|||||+|.+.++|++||+.||+++|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 043443 138 AAES 141 (299)
Q Consensus 138 a~~~ 141 (299)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9754
No 111
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=131.10 Aligned_cols=78 Identities=32% Similarity=0.517 Sum_probs=72.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999984 499999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++++..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998653
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=131.65 Aligned_cols=76 Identities=24% Similarity=0.437 Sum_probs=73.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
++|||+|||.++++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999999987
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=136.72 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=74.9
Q ss_pred CCCCEEEEeCCCCCC------CHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCe-
Q 043443 59 QNHGSLLVRNIPLDC------RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGR- 131 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~------te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr- 131 (299)
...++|||+|||+.+ ++++|+++|.+||.|..|.|+ ..++.++|||||+|.+.++|+.||..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 35789999999999999999999999999999998
Q ss_pred eEEEEEcccC
Q 043443 132 EISVVLAAES 141 (299)
Q Consensus 132 ~i~V~~a~~~ 141 (299)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 114
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=6.3e-19 Score=130.96 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
..-|||+||++.+|+++|+++|.+||+|..|.|+. ++|||||+|.+.++|+.||+.||+..|.|++|.|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46899999999999999999999999999999976 47999999999999999999999999999999999984
No 115
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=7.7e-20 Score=148.60 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||+++|+++|+++|++|| |+.|.|+.++. ++++|||||+|++.++|++|| .||+.+|+|+.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345678999999999999999999999999 77999999975 999999999999999999999 689999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 987644
No 116
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=137.31 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
.+.++|||+|||+++++++|+++|.+| .|..|.|+.++. +.++|||||+|.+.++|++|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 899999999875 899999999999999999999 59999999999999888
Q ss_pred cc
Q 043443 139 AE 140 (299)
Q Consensus 139 ~~ 140 (299)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 117
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=9e-20 Score=136.49 Aligned_cols=81 Identities=30% Similarity=0.489 Sum_probs=74.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcccC
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAES 141 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~~ 141 (299)
++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.+ |+.||..|||..|+|+.|.|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999889999999999999999 99999999999999999999999865
Q ss_pred CC
Q 043443 142 RK 143 (299)
Q Consensus 142 ~~ 143 (299)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 118
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-18 Score=129.75 Aligned_cols=77 Identities=34% Similarity=0.460 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC--CCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERF--GVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~--G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
....++|||+|||+.+++++|+++|.+| |.|..|.++ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3457899999999999999999999999 999999876 479999999999999999999999999999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
.++++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998643
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=135.16 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=73.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|+.||+.||+..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 445789999999999999999999999999999999876 69999999999999999999999999999999999
Q ss_pred cccCC
Q 043443 138 AAESR 142 (299)
Q Consensus 138 a~~~~ 142 (299)
++...
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98643
No 120
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=3.6e-19 Score=142.17 Aligned_cols=81 Identities=30% Similarity=0.437 Sum_probs=73.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEe--EEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVR--DVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~--~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.....++|||+|||+++|+++|+++|.+| .|+ .|.|+.++. |.++|||||+|.+.++|++||+. ++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567899999999999999999999999 677 899999876 99999999999999999999984 77999999999
Q ss_pred EEEccc
Q 043443 135 VVLAAE 140 (299)
Q Consensus 135 V~~a~~ 140 (299)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998864
No 121
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-19 Score=138.29 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=75.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||.++++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999887 566666778899999999999999999999 9999999999999999
Q ss_pred ccCCC
Q 043443 139 AESRK 143 (299)
Q Consensus 139 ~~~~~ 143 (299)
+++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 122
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=131.47 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=72.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEE-EeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDV-YLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v-~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
....++|||+|||+.+++++|+++|.+||.|..| .|+.++.+ +.|||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 58877543 349999999999999999999999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99875
No 123
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-19 Score=140.66 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=73.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEe----EEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVR----DVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~----~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
..+.++|||+|||..+++++|+++|.+||.|. .+.+. ++.++|||||+|.+.++|+.||+.||+..|+|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34578999999999999999999999999984 44444 67889999999999999999999999999999999
Q ss_pred EEEEcccCCC
Q 043443 134 SVVLAAESRK 143 (299)
Q Consensus 134 ~V~~a~~~~~ 143 (299)
.|.+++....
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999987543
No 124
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-19 Score=137.43 Aligned_cols=77 Identities=27% Similarity=0.466 Sum_probs=71.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||+.+++++|+++|.+||.|..|.|+.. ++||||+|.+.++|+.||+.|||..|+|+.|.|+|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=138.64 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELR----APFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.+.++|||+|||+.+++++|+ ++|++||.|..|.|.. ++.++|||||+|.+.++|+.||..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456899999999999999876 6999999999998864 578899999999999999999999999999999999
Q ss_pred EEEcccCC
Q 043443 135 VVLAAESR 142 (299)
Q Consensus 135 V~~a~~~~ 142 (299)
|.|++.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998643
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.5e-18 Score=134.81 Aligned_cols=79 Identities=37% Similarity=0.590 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.+...++|||+|||.++++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999987 5899999999999999999999999999999999
Q ss_pred EcccCCC
Q 043443 137 LAAESRK 143 (299)
Q Consensus 137 ~a~~~~~ 143 (299)
+++....
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9986543
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=6.5e-19 Score=129.43 Aligned_cols=72 Identities=21% Similarity=0.507 Sum_probs=67.5
Q ss_pred CEEEEeCCCCCC------CHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCe-eEE
Q 043443 62 GSLLVRNIPLDC------RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGR-EIS 134 (299)
Q Consensus 62 ~~l~V~nLp~~~------te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr-~i~ 134 (299)
++|||+|||..+ ++++|+++|.+||.|..|.|+ +.++.++|||||+|.+.++|++||+.|||..|+|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 35789999999999999999999999999999999 887
Q ss_pred E
Q 043443 135 V 135 (299)
Q Consensus 135 V 135 (299)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 128
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-19 Score=137.02 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=76.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---EeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGV---VRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~---I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
.....++|||+|||+++|+++|+++|..||. |..|.|+.++. +.++|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999998 89999999876 9999999999999999999999 99999999999
Q ss_pred EEEEccc
Q 043443 134 SVVLAAE 140 (299)
Q Consensus 134 ~V~~a~~ 140 (299)
.|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9999875
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-18 Score=132.93 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|+.||..||+..|+|+.|.|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3468999999999999999999999999999999984 3799999999999999999999999999999999998
Q ss_pred cc
Q 043443 139 AE 140 (299)
Q Consensus 139 ~~ 140 (299)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 130
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=130.72 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCC-EeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCC-ceeCCeeEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGV-VRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG-KRFAGREISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~-I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng-~~l~Gr~i~V~ 136 (299)
...++|||+|||.++++++|+++|.+||. |..+.+. .+|||||+|.+.++|++||+.||+ ..|+|+.|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 6655553 268999999999999999999999 99999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
+++++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998653
No 131
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=127.68 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=70.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|| ++++++|+++|.+||+|..|.|. ..+|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446789999996 89999999999999999999985 347999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
|+..+.
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 998654
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=4.4e-18 Score=129.59 Aligned_cols=77 Identities=19% Similarity=0.421 Sum_probs=70.9
Q ss_pred CCCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 57 KEQNHGSLLVRNIPL-DCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
...+.++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344678999999998 99999999999999999999884 589999999999999999999999999999999
Q ss_pred EEcccC
Q 043443 136 VLAAES 141 (299)
Q Consensus 136 ~~a~~~ 141 (299)
++++..
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999753
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=8.9e-19 Score=133.93 Aligned_cols=76 Identities=32% Similarity=0.589 Sum_probs=71.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcccC
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAES 141 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~~ 141 (299)
++|||+|||.++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+..|+|+.|.|.+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5799999999999999999999999999999999999865
Q ss_pred C
Q 043443 142 R 142 (299)
Q Consensus 142 ~ 142 (299)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.4e-18 Score=131.67 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=75.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELR----APFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 132 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~ 132 (299)
...+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|+.||+.|||..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999998873 4567899999999999999999999999999999
Q ss_pred EEEEEcccCCC
Q 043443 133 ISVVLAAESRK 143 (299)
Q Consensus 133 i~V~~a~~~~~ 143 (299)
|.|+++++...
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987543
No 135
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8e-19 Score=137.23 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCCCCCEEEEeCCCCC-CCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCC--ceeCCeeE
Q 043443 57 KEQNHGSLLVRNIPLD-CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG--KRFAGREI 133 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng--~~l~Gr~i 133 (299)
...+.++|||+|||++ +++++|+++|.+||+|..|.|+.. +|||||+|++.++|+.||+.||+ .+|.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3456789999999998 999999999999999999999754 69999999999999999998864 56999999
Q ss_pred EEEEcccCC
Q 043443 134 SVVLAAESR 142 (299)
Q Consensus 134 ~V~~a~~~~ 142 (299)
.|++++...
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999998643
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=5e-19 Score=127.76 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=71.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
+|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998899999999999999999999998 4899999999999875
No 137
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=128.85 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
.....+|||+|||+++++++|+++|.+||.|..| +.++.++. ||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 44444544 99999999999999999 999999999999998
Q ss_pred cccCC
Q 043443 138 AAESR 142 (299)
Q Consensus 138 a~~~~ 142 (299)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87543
No 138
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9.6e-19 Score=139.21 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=73.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCE----eEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVV----RDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I----~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
..+.++|||+|||+++|+++|++||.+||.| ..|.|+.+. +++++|||||+|.+.++|++||+. |++.|+|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999976 689898884 899999999999999999999996 9999999999
Q ss_pred EEEEccc
Q 043443 134 SVVLAAE 140 (299)
Q Consensus 134 ~V~~a~~ 140 (299)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998864
No 139
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=4e-18 Score=133.32 Aligned_cols=80 Identities=26% Similarity=0.495 Sum_probs=74.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ +..+|||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999865 455899999999999999999999999999999999999
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
.+.
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 853
No 140
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.2e-18 Score=130.78 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=70.8
Q ss_pred CCCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 57 KEQNHGSLLVRNIPL-DCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
...+.++|||+|||+ .+++++|+++|.+||.|..|.|. +|||||+|.+.++|+.||+.||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999985 589999999999999999999999999999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
++++...
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9998654
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-20 Score=143.86 Aligned_cols=85 Identities=27% Similarity=0.461 Sum_probs=79.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeE--------EEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeC
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRD--------VYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA 129 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~--------v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~ 129 (299)
..+.++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 889998888999999999999999999999999999999
Q ss_pred CeeEEEEEcccCC
Q 043443 130 GREISVVLAAESR 142 (299)
Q Consensus 130 Gr~i~V~~a~~~~ 142 (299)
|+.|.|.+++.+.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998654
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=131.24 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=72.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.+.+.++|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2367889999999999999999999999999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997643
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=4.1e-18 Score=132.39 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 60 NHGSLLVRNIPLD-CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 60 ~~~~l~V~nLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
..++|||+|||+. +++++|+++|.+||.|..|.|. ++||||+|.+.++|+.||+.||+..|+|+.|.|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--------KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE--------TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 9999999999999999999982 689999999999999999999999999999999999
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 144
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=7.3e-18 Score=145.99 Aligned_cols=84 Identities=23% Similarity=0.352 Sum_probs=77.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++.++|||||+|.+.++|+.||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 043443 138 AAES 141 (299)
Q Consensus 138 a~~~ 141 (299)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8653
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=141.27 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=73.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEE--eccC---CCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVY--LPKD---YYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~--i~~d---~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
.+.++|||+|||+.+++++|+++|.+||.|..|. ++.+ ..++.++|||||+|.+.++|+.||..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999999999999999999999987641 1111 2367889999999999999999999999999999999
Q ss_pred EEEEcccCCCC
Q 043443 134 SVVLAAESRKR 144 (299)
Q Consensus 134 ~V~~a~~~~~~ 144 (299)
.|.+++.....
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999865443
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=2.3e-18 Score=131.84 Aligned_cols=81 Identities=23% Similarity=0.450 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+ ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 89999999999999999999998 999999999999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8643
No 147
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.8e-18 Score=132.17 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=70.1
Q ss_pred CCCCCEEEE--eCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee-----CC
Q 043443 58 EQNHGSLLV--RNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF-----AG 130 (299)
Q Consensus 58 ~~~~~~l~V--~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l-----~G 130 (299)
..++.+||| +||++.+++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++||+.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 779999999999999999999999988753 68999999999999999999999998 68
Q ss_pred eeEEEEEccc
Q 043443 131 REISVVLAAE 140 (299)
Q Consensus 131 r~i~V~~a~~ 140 (299)
..|.|.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 9999999875
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=9.6e-18 Score=137.45 Aligned_cols=80 Identities=30% Similarity=0.561 Sum_probs=74.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999876 47999999999999999999999999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
+++++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99864
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.8e-17 Score=136.26 Aligned_cols=82 Identities=28% Similarity=0.453 Sum_probs=78.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|+|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 043443 138 AA 139 (299)
Q Consensus 138 a~ 139 (299)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1e-17 Score=124.99 Aligned_cols=75 Identities=21% Similarity=0.416 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
..++|||+|||+.+++++|+++|.+| .|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999885 458999999999999999999999999999999999997
Q ss_pred cC
Q 043443 140 ES 141 (299)
Q Consensus 140 ~~ 141 (299)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=2.6e-17 Score=135.42 Aligned_cols=81 Identities=32% Similarity=0.576 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEccc
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~ 140 (299)
.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999975
Q ss_pred C
Q 043443 141 S 141 (299)
Q Consensus 141 ~ 141 (299)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2e-17 Score=136.64 Aligned_cols=83 Identities=28% Similarity=0.470 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
+.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCC
Q 043443 140 ESR 142 (299)
Q Consensus 140 ~~~ 142 (299)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=2.5e-17 Score=131.88 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccE-EEEEEcCHHHHHHHHHhhCCceeCC--eeEEEE
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGF-AFVQFVDPYEAAEAQHHMNGKRFAG--REISVV 136 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~-afVeF~~~~~A~~Al~~lng~~l~G--r~i~V~ 136 (299)
....|||+||++.+|+++|.++|++||+|..|.|+.. .++| |||+|.+.++|+.||+.|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3457889999999999999999999999999988754 2577 9999999999999999999999998 999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
|++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998654
No 154
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=130.36 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=69.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCC---CCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYT---GEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~---g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
...++|||+|||+++++++|+++|.+||+|. +.++.+..+ +.++|||||+|.+.++|++||+.|+ .|+|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4468999999999999999999999999999 888888776 7999999999999999999999884 477777777
Q ss_pred EEccc
Q 043443 136 VLAAE 140 (299)
Q Consensus 136 ~~a~~ 140 (299)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=1.7e-17 Score=137.76 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCC--eeEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG--REISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G--r~i~V~ 136 (299)
....+|||+||++.+++++|+++|++||+|+.|.|+.+ ..++||||+|.+.++|+.||+.|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34567999999999999999999999999999998643 347899999999999999999999999965 999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998753
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3e-17 Score=141.11 Aligned_cols=84 Identities=21% Similarity=0.425 Sum_probs=79.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
....
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 157
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-17 Score=131.70 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=72.6
Q ss_pred CEEEEeCC----CCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHH----HHHHHH--hhCCce
Q 043443 62 GSLLVRNI----PLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYE----AAEAQH--HMNGKR 127 (299)
Q Consensus 62 ~~l~V~nL----p~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~----A~~Al~--~lng~~ 127 (299)
+.|||+|| |+.|++++|+++|..||+|..|.++.|+.||.++|||||+|.+ +++ |..||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 889988 789999
Q ss_pred eCCeeEEEEEccc
Q 043443 128 FAGREISVVLAAE 140 (299)
Q Consensus 128 l~Gr~i~V~~a~~ 140 (299)
|+|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999999764
No 158
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6e-17 Score=128.85 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=67.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccE-EEEEEcCHHHHHHHHHhhCCceeCC--eeEEEEEc
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGF-AFVQFVDPYEAAEAQHHMNGKRFAG--REISVVLA 138 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~-afVeF~~~~~A~~Al~~lng~~l~G--r~i~V~~a 138 (299)
..|||+||++.+++++|+++|++||+|..|.|+.. .|| |||+|.+.++|+.||+.|||..|.| +.|.|++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45689999999999999999999999999998642 286 9999999999999999999999987 69999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
+...
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8654
No 159
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=122.12 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=65.4
Q ss_pred CCCE-EEEeCCCCCCCHHH----HHHHHhcC-CCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 60 NHGS-LLVRNIPLDCRPEE----LRAPFERF-GVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 60 ~~~~-l~V~nLp~~~te~d----L~~~F~~~-G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
+..| |||+|||+.+++++ |.++|.+| |+|..| ++ |+|||+|.+.++|+.||+.|||.+|.|+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999988 55899999 599887 22 999999999999999999999999999999
Q ss_pred EEEEcccCCC
Q 043443 134 SVVLAAESRK 143 (299)
Q Consensus 134 ~V~~a~~~~~ 143 (299)
.|++|+....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987543
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=6.8e-17 Score=137.05 Aligned_cols=85 Identities=22% Similarity=0.396 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCC
Q 043443 138 AAESR 142 (299)
Q Consensus 138 a~~~~ 142 (299)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98754
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=9.1e-17 Score=120.37 Aligned_cols=76 Identities=30% Similarity=0.478 Sum_probs=62.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCce--eCCeeEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKR--FAGREISV 135 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~--l~Gr~i~V 135 (299)
....++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456789999999999999999999999999999999874 58999999999999983 45554 56999999
Q ss_pred EEcccCC
Q 043443 136 VLAAESR 142 (299)
Q Consensus 136 ~~a~~~~ 142 (299)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998643
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=4.4e-17 Score=135.16 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
...+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999973
No 163
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=5.4e-17 Score=120.25 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----C-------CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCce
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERF----G-------VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKR 127 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~----G-------~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~ 127 (299)
....+|||+|||+++++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|++|| .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 9999999865 699999999999999999 999999
Q ss_pred eCCeeEEEEE
Q 043443 128 FAGREISVVL 137 (299)
Q Consensus 128 l~Gr~i~V~~ 137 (299)
|+|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999973
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=6.5e-17 Score=136.99 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=77.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
.....++|||+|||+++|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999988999999999999999999999985 9999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98754
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=8.4e-17 Score=136.26 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||.. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988999999999999999999999986 899999999999999
Q ss_pred ccCCC
Q 043443 139 AESRK 143 (299)
Q Consensus 139 ~~~~~ 143 (299)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87544
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=9.2e-17 Score=138.69 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 60 NHGSLLVRNIP-LDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 60 ~~~~l~V~nLp-~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
+.++|||+||| +.+++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 899999999999999999999998753 799999999999999999999999999999999999
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=5.8e-17 Score=140.29 Aligned_cols=81 Identities=22% Similarity=0.364 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
...+|||+|||+.+++++|+++|.+||.|+.|.|+.+. +.++|||||+|.+.++|++||+.|||.+|+|+.|.|.+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999999874 4478999999999999999999999999999999999998
Q ss_pred cCC
Q 043443 140 ESR 142 (299)
Q Consensus 140 ~~~ 142 (299)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 643
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.8e-17 Score=134.93 Aligned_cols=81 Identities=28% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
...+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999998899999999999999999999998 89999999999999997
Q ss_pred cC
Q 043443 140 ES 141 (299)
Q Consensus 140 ~~ 141 (299)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=9.6e-17 Score=137.98 Aligned_cols=83 Identities=27% Similarity=0.390 Sum_probs=75.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
.+.++|||+|||.++++++|+++|.+||+|..|.|+.+..++..+|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=8.9e-17 Score=127.39 Aligned_cols=77 Identities=27% Similarity=0.433 Sum_probs=70.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|| ++++++|+++|.+||+|..|.|.. .+|||||+|.+.++|++||+.||+..|+|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 699999999999999999999863 479999999999999999999999999999999999
Q ss_pred cccCC
Q 043443 138 AAESR 142 (299)
Q Consensus 138 a~~~~ 142 (299)
++...
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98653
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.9e-16 Score=130.61 Aligned_cols=80 Identities=33% Similarity=0.491 Sum_probs=76.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCC--eeEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG--REISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G--r~i~V~ 136 (299)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998889999999999999999999999999999988 999999
Q ss_pred Ec
Q 043443 137 LA 138 (299)
Q Consensus 137 ~a 138 (299)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 172
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.6e-17 Score=119.76 Aligned_cols=77 Identities=29% Similarity=0.403 Sum_probs=65.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||.++++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 34689999999999999999999999999999999864 589999999999999865332 34568999999999
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=4e-16 Score=120.60 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=72.8
Q ss_pred CCCCEEEEeCCCC-----CCCHHHHHHHHhcCCCEeEEEeccCCCC-CCCccEEEEEEcCHHHHHHHHHhhCCceeCCee
Q 043443 59 QNHGSLLVRNIPL-----DCRPEELRAPFERFGVVRDVYLPKDYYT-GEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 132 (299)
Q Consensus 59 ~~~~~l~V~nLp~-----~~te~dL~~~F~~~G~I~~v~i~~d~~~-g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~ 132 (299)
.+..+|+|.||.. +.++++|+++|++||+|..|.|+.++.+ +.++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999953 2378999999999999999999987654 678999999999999999999999999999999
Q ss_pred EEEEEccc
Q 043443 133 ISVVLAAE 140 (299)
Q Consensus 133 i~V~~a~~ 140 (299)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 174
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.3e-16 Score=129.58 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=74.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcccC
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAES 141 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~~ 141 (299)
.+|||+|||.++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999886 4678999999999999999999999999999999999999754
Q ss_pred C
Q 043443 142 R 142 (299)
Q Consensus 142 ~ 142 (299)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3.1e-16 Score=128.97 Aligned_cols=80 Identities=30% Similarity=0.476 Sum_probs=74.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee--EEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE--ISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~--i~V~ 136 (299)
....+|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 34679999999999999999999999999999999998888999999999999999999999999999999965 8888
Q ss_pred Ec
Q 043443 137 LA 138 (299)
Q Consensus 137 ~a 138 (299)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 176
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=119.87 Aligned_cols=81 Identities=28% Similarity=0.495 Sum_probs=69.6
Q ss_pred CCCCCCEEEEeCCCCCCC-----------HHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCC
Q 043443 57 KEQNHGSLLVRNIPLDCR-----------PEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~t-----------e~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng 125 (299)
...+..+|+|.||..... +++|+++|.+||.|..|.| .++ .++|||||+|.+.++|++||+.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999944332 5899999999999999966 443 3789999999999999999999999
Q ss_pred ceeCCeeEEEEEcccC
Q 043443 126 KRFAGREISVVLAAES 141 (299)
Q Consensus 126 ~~l~Gr~i~V~~a~~~ 141 (299)
..|+|+.|.|.++.+.
T Consensus 87 ~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGRQITAQAWDGT 102 (112)
T ss_dssp CEETTEECEEEECCSC
T ss_pred CEECCcEEEEEEeCCC
Confidence 9999999999999764
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=5e-16 Score=128.81 Aligned_cols=83 Identities=23% Similarity=0.405 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCC--CCccEEEEEEcCHHHHHHHHHhhCCceeC---CeeEE
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTG--EPRGFAFVQFVDPYEAAEAQHHMNGKRFA---GREIS 134 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g--~~~g~afVeF~~~~~A~~Al~~lng~~l~---Gr~i~ 134 (299)
+.++|||+|||+++++++|+++|.+||+|..|.|+.++.++ .++|||||+|.+.++|+.||+.||+..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999988776 88999999999999999999999998876 67888
Q ss_pred EEEcccCC
Q 043443 135 VVLAAESR 142 (299)
Q Consensus 135 V~~a~~~~ 142 (299)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877543
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=5e-16 Score=128.86 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeC---CeeEEEE
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA---GREISVV 136 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~---Gr~i~V~ 136 (299)
...+|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|. ++.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56799999999999999999999999999999999885 5888999999999999999999999998776 4999999
Q ss_pred Ecc
Q 043443 137 LAA 139 (299)
Q Consensus 137 ~a~ 139 (299)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=8.9e-16 Score=137.80 Aligned_cols=83 Identities=24% Similarity=0.429 Sum_probs=75.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELR----APFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 132 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~ 132 (299)
+..+.++|||+|||+.+++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|+.||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668899999999999999966 8999999999999875 6788999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 043443 133 ISVVLAAESR 142 (299)
Q Consensus 133 i~V~~a~~~~ 142 (299)
|.|.|++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997543
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=4.4e-16 Score=128.46 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457999999999999999999999999999999999988999999999999999999999984 678999999998876
Q ss_pred c
Q 043443 140 E 140 (299)
Q Consensus 140 ~ 140 (299)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=5.9e-16 Score=128.96 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
...++|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456899999999999999999999999998776 347788999999999999999999999999999999999999
Q ss_pred ccC
Q 043443 139 AES 141 (299)
Q Consensus 139 ~~~ 141 (299)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=5.9e-16 Score=135.40 Aligned_cols=79 Identities=28% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 58 EQNHGSLLVRNIPL-DCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 58 ~~~~~~l~V~nLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
..+.++|||+|||. .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34678999999999 99999999999999999999999874 7899999999999999999999999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99754
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=4.5e-16 Score=137.07 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=71.2
Q ss_pred CCCCCEEEEeCCCCCC---------CHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee
Q 043443 58 EQNHGSLLVRNIPLDC---------RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF 128 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~---------te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l 128 (299)
.....+|||+||+..+ ++++|.++|++||+|+.|.|+.+ +|||||+|.+.++|+.||+.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999999864 79999999999999999999999999
Q ss_pred ------------CCeeEEEEEcccCC
Q 043443 129 ------------AGREISVVLAAESR 142 (299)
Q Consensus 129 ------------~Gr~i~V~~a~~~~ 142 (299)
.|+.|.|.||+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998643
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.1e-15 Score=130.74 Aligned_cols=78 Identities=14% Similarity=0.298 Sum_probs=71.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEccc
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~ 140 (299)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||..++ ..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 5799999999999999999999999999999999875 58899999999999999999998654 599999999999864
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=3.7e-15 Score=133.72 Aligned_cols=77 Identities=21% Similarity=0.360 Sum_probs=71.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeC-CeeEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA-GREISVV 136 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~-Gr~i~V~ 136 (299)
....++|||+|||..+++++|+++|.+||.|+.|.|+.+. +|||||+|.+.++|++||+.|||..|. |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred Ecc
Q 043443 137 LAA 139 (299)
Q Consensus 137 ~a~ 139 (299)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.6e-15 Score=136.81 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=75.6
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhcCCCEeEEEeccCCC-CCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 59 QNHGSLLVRNIPLD-CRPEELRAPFERFGVVRDVYLPKDYY-TGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~-~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...++|||+|||.. +++++|+++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|+.|| .|||..|+|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45689999999999 99999999999999999999998876 5899999999999999999999 999999999999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
|++++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99864
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=5.1e-15 Score=132.95 Aligned_cols=83 Identities=22% Similarity=0.403 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
..++|||+|||..+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||..||+..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCC
Q 043443 140 ESR 142 (299)
Q Consensus 140 ~~~ 142 (299)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=128.61 Aligned_cols=77 Identities=29% Similarity=0.426 Sum_probs=72.2
Q ss_pred CCEEEEeCCCC-CCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 61 HGSLLVRNIPL-DCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 61 ~~~l~V~nLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
.++|||+|||. .+++++|+++|.+||.|..|.|+.++ +|||||+|.+.++|+.||+.||+..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998864 7899999999999999999999999999999999998
Q ss_pred cCC
Q 043443 140 ESR 142 (299)
Q Consensus 140 ~~~ 142 (299)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=9.3e-16 Score=127.74 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 57 KEQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
...+.++|||+|||..+++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4556889999999999999999999999998765 233444567889999999999999999995 99999999999999
Q ss_pred EcccCC
Q 043443 137 LAAESR 142 (299)
Q Consensus 137 ~a~~~~ 142 (299)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998643
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=5.1e-15 Score=132.94 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCCC-CHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 59 QNHGSLLVRNIPLDC-RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~-te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....+|||+|||..+ ++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|+.||..|||..|+|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456899999999995 999999999999999999998876 788999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 043443 138 AAESRKR 144 (299)
Q Consensus 138 a~~~~~~ 144 (299)
+.++...
T Consensus 261 a~~~~~~ 267 (284)
T 3smz_A 261 CAPGPPG 267 (284)
T ss_dssp CCSSSCH
T ss_pred ecCCCcc
Confidence 9876543
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=1e-14 Score=112.67 Aligned_cols=82 Identities=21% Similarity=0.417 Sum_probs=71.0
Q ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHhcCCCEeEEEeccCCCC--CCCccEEEEEEcCHHHHHHHHHhhCCc
Q 043443 59 QNHGSLLVRNI--PLDCR--------PEELRAPFERFGVVRDVYLPKDYYT--GEPRGFAFVQFVDPYEAAEAQHHMNGK 126 (299)
Q Consensus 59 ~~~~~l~V~nL--p~~~t--------e~dL~~~F~~~G~I~~v~i~~d~~~--g~~~g~afVeF~~~~~A~~Al~~lng~ 126 (299)
.++.+|+|.|| +..+. ++||+++|++||.|..|.|+.+..+ +.++|||||+|.+.++|++||+.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35679999998 43443 3789999999999999999987654 367899999999999999999999999
Q ss_pred eeCCeeEEEEEccc
Q 043443 127 RFAGREISVVLAAE 140 (299)
Q Consensus 127 ~l~Gr~i~V~~a~~ 140 (299)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=6.2e-15 Score=131.40 Aligned_cols=77 Identities=27% Similarity=0.544 Sum_probs=71.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEE
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVL 137 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~ 137 (299)
....++|||+|||.++|+++|.++|.+||.|..|.|..+ +|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345689999999999999999999999999999999755 69999999999999999999999999999999999
Q ss_pred ccc
Q 043443 138 AAE 140 (299)
Q Consensus 138 a~~ 140 (299)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=8.3e-15 Score=128.06 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeC-CeeEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA-GREISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~-Gr~i~V~ 136 (299)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.+ .+|||||+|.+.++|++||+.|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999653 2689999999999999999999999999 9999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99753
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=4.6e-15 Score=126.17 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=71.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeC-CeeEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA-GREISVV 136 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~-Gr~i~V~ 136 (299)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|++||+.|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999997542 789999999999999999999999999 9999999
Q ss_pred EcccC
Q 043443 137 LAAES 141 (299)
Q Consensus 137 ~a~~~ 141 (299)
|+++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99753
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=4.5e-15 Score=128.04 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=69.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCE--eEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCe----e
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVV--RDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGR----E 132 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I--~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr----~ 132 (299)
.+..+|||+|||+.++|++|+++|++||.| +.|.|+.+. +..+|||||+|.+.++|+.||..|||.+|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 356799999999999999999999999999 889888764 45569999999999999999999999999886 5
Q ss_pred EEEEEc
Q 043443 133 ISVVLA 138 (299)
Q Consensus 133 i~V~~a 138 (299)
|.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=8.8e-15 Score=115.39 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=70.4
Q ss_pred CCCEEEEeCCC--CCC---CHHHHHHHHhcCCCEeEEEeccCCC----CCCCccEEEEEEcCHHHHHHHHHhhCCceeCC
Q 043443 60 NHGSLLVRNIP--LDC---RPEELRAPFERFGVVRDVYLPKDYY----TGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG 130 (299)
Q Consensus 60 ~~~~l~V~nLp--~~~---te~dL~~~F~~~G~I~~v~i~~d~~----~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G 130 (299)
++.+|+|.||- .++ .++||+++|++||+|..|.|+.+.. ++..+||+||+|.+.++|++||+.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56899999993 222 3689999999999999999998754 34567999999999999999999999999999
Q ss_pred eeEEEEEccc
Q 043443 131 REISVVLAAE 140 (299)
Q Consensus 131 r~i~V~~a~~ 140 (299)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999863
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.1e-15 Score=115.38 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=62.9
Q ss_pred EeCCCCCCCHHHHHHHH------------hcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 66 VRNIPLDCRPEELRAPF------------ERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 66 V~nLp~~~te~dL~~~F------------~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
+.||++.+++++|+++| ++||+|..|.|+.+. ++.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777776666 999999999999875 47889999999999999999999999999999999
Q ss_pred EEEEc
Q 043443 134 SVVLA 138 (299)
Q Consensus 134 ~V~~a 138 (299)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=1.9e-14 Score=119.10 Aligned_cols=75 Identities=27% Similarity=0.427 Sum_probs=68.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC----C-------CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERF----G-------VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF 128 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~----G-------~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l 128 (299)
+.++|||+|||.++|+++|+++|.+| | .|..+.+..+ +|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 7 7788877654 799999999999999999 7999999
Q ss_pred CCeeEEEEEcccC
Q 043443 129 AGREISVVLAAES 141 (299)
Q Consensus 129 ~Gr~i~V~~a~~~ 141 (299)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999998754
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=1.9e-14 Score=129.68 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEc
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 138 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a 138 (299)
..++|||+|||..+++++|.++|.+|| .|..|.|+.+.. +.++|||||+|.+.++|+.||..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999998764 778999999999999999999999999999999999998
Q ss_pred ccCC
Q 043443 139 AESR 142 (299)
Q Consensus 139 ~~~~ 142 (299)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7644
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=2.9e-14 Score=120.71 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC----C-------CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERF----G-------VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF 128 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~----G-------~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l 128 (299)
..++|||+|||+.+++++|+++|.+| | .|..+.+.. .+|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45799999999999999999999999 5 677776654 4799999999999999999 7999999
Q ss_pred CCeeEEEEEcccC
Q 043443 129 AGREISVVLAAES 141 (299)
Q Consensus 129 ~Gr~i~V~~a~~~ 141 (299)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=3.4e-14 Score=126.63 Aligned_cols=81 Identities=25% Similarity=0.310 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC-CceeC---CeeEEE
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN-GKRFA---GREISV 135 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln-g~~l~---Gr~i~V 135 (299)
+..+|||+|||..+|+++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|..||..|| +..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3579999999999999999999999999999999988 588999999999999999999999995 55554 999999
Q ss_pred EEcccC
Q 043443 136 VLAAES 141 (299)
Q Consensus 136 ~~a~~~ 141 (299)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=104.03 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCEEEEeCCC-------CCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 61 HGSLLVRNIP-------LDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 61 ~~~l~V~nLp-------~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
..+|.|.-.. ..+++++|+++|.+||+|..|.|+. .++|||||+|++.++|+.||+.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4567776543 4589999999999999999999873 5689999999999999999997554 679999
Q ss_pred EEEEcccCC
Q 043443 134 SVVLAAESR 142 (299)
Q Consensus 134 ~V~~a~~~~ 142 (299)
.|.|++...
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999998654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.49 E-value=6.9e-14 Score=129.34 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=66.3
Q ss_pred CCCCCEEEEeC--CCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeC---Ce-
Q 043443 58 EQNHGSLLVRN--IPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFA---GR- 131 (299)
Q Consensus 58 ~~~~~~l~V~n--Lp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~---Gr- 131 (299)
..++.+|||+| |++.+|+++|+++|++||+|+.|.|.. .+|||||+|.+.++|++||+.|||+++. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578999999999999999999988864 3699999999999999999999999883 44
Q ss_pred -eEEEEEcc
Q 043443 132 -EISVVLAA 139 (299)
Q Consensus 132 -~i~V~~a~ 139 (299)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=7.9e-13 Score=103.48 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCC--CCC--------CHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCcee
Q 043443 59 QNHGSLLVRNIP--LDC--------RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRF 128 (299)
Q Consensus 59 ~~~~~l~V~nLp--~~~--------te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l 128 (299)
.++.+|.|.||= .+. .++||+++|++||.|..|.|..+. .+|||||+|.+.++|++||+.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356789999982 221 136889999999999999997652 589999999999999999999999999
Q ss_pred CCeeEEEEEccc
Q 043443 129 AGREISVVLAAE 140 (299)
Q Consensus 129 ~Gr~i~V~~a~~ 140 (299)
+|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999863
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.9e-12 Score=100.18 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=69.6
Q ss_pred CCCCCCEEEEeCCCCC-CCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC-HHHHHHHHHhhC--CceeCCee
Q 043443 57 KEQNHGSLLVRNIPLD-CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD-PYEAAEAQHHMN--GKRFAGRE 132 (299)
Q Consensus 57 ~~~~~~~l~V~nLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~-~~~A~~Al~~ln--g~~l~Gr~ 132 (299)
.-...+.|||+||+.. +++++|+++|.+||+|.+|+|+.+. ..|||+|.+ ..+|+.||..|| +.+|+|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4456789999999999 9999999999999999999999874 469999999 899999999994 77899999
Q ss_pred EEEEEccc
Q 043443 133 ISVVLAAE 140 (299)
Q Consensus 133 i~V~~a~~ 140 (299)
|+|++...
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 99988763
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=92.18 Aligned_cols=74 Identities=27% Similarity=0.384 Sum_probs=62.9
Q ss_pred CCEEEEeCCCC----CCCH----HHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCee
Q 043443 61 HGSLLVRNIPL----DCRP----EELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 132 (299)
Q Consensus 61 ~~~l~V~nLp~----~~te----~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~ 132 (299)
..||+|..++. ++.. .+|.+.|.+||+|..|.|+.+ .+||+|.+.++|.+||+ |||..|+|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 35888887762 2222 679999999999999999976 38999999999999998 9999999999
Q ss_pred EEEEEcccCCC
Q 043443 133 ISVVLAAESRK 143 (299)
Q Consensus 133 i~V~~a~~~~~ 143 (299)
|+|+++++...
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999987543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=8e-11 Score=87.85 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCCEEEEeCCCCC------CCH---HHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCC
Q 043443 60 NHGSLLVRNIPLD------CRP---EELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG 130 (299)
Q Consensus 60 ~~~~l~V~nLp~~------~te---~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G 130 (299)
+..||+|..++.. ..+ .+|.+.|.+||+|..|.|+.+ -+||+|.+.++|.+||+ |||+.|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3468999888643 232 569999999999999999987 39999999999999998 99999999
Q ss_pred eeEEEEEcc
Q 043443 131 REISVVLAA 139 (299)
Q Consensus 131 r~i~V~~a~ 139 (299)
+.|+|.+..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=1.6e-09 Score=93.76 Aligned_cols=80 Identities=25% Similarity=0.332 Sum_probs=66.2
Q ss_pred CCEEEEeCCC-----CCCCHHHHHHHHhcCCCEeEEEeccCC----CCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCe
Q 043443 61 HGSLLVRNIP-----LDCRPEELRAPFERFGVVRDVYLPKDY----YTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGR 131 (299)
Q Consensus 61 ~~~l~V~nLp-----~~~te~dL~~~F~~~G~I~~v~i~~d~----~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr 131 (299)
...|.+.|+- ..-.+++|.+.|.+||+|..|.|+.+. .++..+|++||+|.+.++|++||+.|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4456666552 223467899999999999999998543 3458899999999999999999999999999999
Q ss_pred eEEEEEccc
Q 043443 132 EISVVLAAE 140 (299)
Q Consensus 132 ~i~V~~a~~ 140 (299)
.|.|.++..
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999863
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.8e-08 Score=76.76 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=67.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-----CCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERF-----GVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREI 133 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~-----G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i 133 (299)
+...+|-|-|||..++...|..|++.+ |.|+.|.+..| -+-|+|+|.+...|-+|.-.|||.+|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 456789999999999999999999999 99999999988 4789999999999999999999999999999
Q ss_pred EEEEc
Q 043443 134 SVVLA 138 (299)
Q Consensus 134 ~V~~a 138 (299)
.|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98644
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.27 E-value=1.5e-06 Score=65.84 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCCC-C----HHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 60 NHGSLLVRNIPLDC-R----PEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 60 ~~~~l~V~nLp~~~-t----e~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
..++|+|+||+..+ . .+.++++|..|+++....+.+. -.-..|.|.+.++|.+|-..||+..|.|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998865 2 2577899999999988777654 34679999999999999999999999999999
Q ss_pred EEEcccC
Q 043443 135 VVLAAES 141 (299)
Q Consensus 135 V~~a~~~ 141 (299)
|.++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999843
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=7.7e-05 Score=56.22 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhc-----CCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEE
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFER-----FGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISV 135 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~-----~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V 135 (299)
..+|.|.|||..+.++.|+-+|++ -|+|..|.... +-|+|+|.+.+.|+..|+. ..+.|++..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 469999999999999999999987 26888887753 5799999999999999873 467888999998
Q ss_pred EEccc
Q 043443 136 VLAAE 140 (299)
Q Consensus 136 ~~a~~ 140 (299)
....+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 76554
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=4.3e-05 Score=59.32 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCC-eeEEEEE
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAG-REISVVL 137 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~G-r~i~V~~ 137 (299)
...+.|.|.+.|... ...|..+|.+||+|.+.... ....+..|.|.+..+|++||. .||..|+| ..|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 346789999998875 67788899999999988763 235799999999999999998 59999985 6666766
Q ss_pred cc
Q 043443 138 AA 139 (299)
Q Consensus 138 a~ 139 (299)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.79 E-value=0.00011 Score=54.51 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=61.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCC--CCccEEEEEEcCHHHHHHHHHhhCCceeCCe-----eEE
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTG--EPRGFAFVQFVDPYEAAEAQHHMNGKRFAGR-----EIS 134 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g--~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr-----~i~ 134 (299)
++|.|.+||+.+||+++.+.+..+.++....++..+.+. ....-|||.|.+.+++....+.++|..|-+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 589999999999999999999999888776665443322 2346799999999999999999999987432 335
Q ss_pred EEEcc
Q 043443 135 VVLAA 139 (299)
Q Consensus 135 V~~a~ 139 (299)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66664
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.78 E-value=0.0001 Score=54.94 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=47.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN 124 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln 124 (299)
..+.++| ++|..+...||.++|..||.| .|.++.| .-|||.|.+.+.|..||..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3466777 999999999999999999965 4666655 489999999999999998764
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.52 E-value=0.0001 Score=55.02 Aligned_cols=54 Identities=24% Similarity=0.360 Sum_probs=45.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN 124 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln 124 (299)
+.|+| ++|..+...||.++|..||.| .|.++.| .-|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999944 5666665 489999999999999999774
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.41 E-value=0.00026 Score=55.68 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=57.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeE-EEeccCC------------CCC-CCccEEEEEEcCHHHHHHHHHhhCC
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRD-VYLPKDY------------YTG-EPRGFAFVQFVDPYEAAEAQHHMNG 125 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~-v~i~~d~------------~~g-~~~g~afVeF~~~~~A~~Al~~lng 125 (299)
..+.|.|.+.|..++ ..|.++|++||.|.+ +.+.... ... ...++..|+|++..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456788889987655 456678999999976 2222100 000 135788999999999999998 599
Q ss_pred ceeCCeeEEEEEccc
Q 043443 126 KRFAGREISVVLAAE 140 (299)
Q Consensus 126 ~~l~Gr~i~V~~a~~ 140 (299)
..|+|..|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888887753
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.32 E-value=0.00059 Score=50.95 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCC--CCccEEEEEEcCHHHHHHHHHhhCCceeCCe-----e
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTG--EPRGFAFVQFVDPYEAAEAQHHMNGKRFAGR-----E 132 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g--~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr-----~ 132 (299)
-.-+|.|..||+.+||+++.+.+..+-++....++..+.+. ..-.-|||.|.+.+++....+.++|..|-+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 35689999999999999998888776555433333222221 1235789999999999999999999987432 4
Q ss_pred EEEEEcc
Q 043443 133 ISVVLAA 139 (299)
Q Consensus 133 i~V~~a~ 139 (299)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5567664
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.57 E-value=0.001 Score=63.40 Aligned_cols=58 Identities=17% Similarity=0.361 Sum_probs=44.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHH
Q 043443 58 EQNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121 (299)
Q Consensus 58 ~~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~ 121 (299)
++....|||. ++..+++.+|.++|.+||.|..+.+..++ ..||+|||.+.+++..++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 3456799997 79999999999999999999999887653 4799999999998887765
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.06 E-value=0.0021 Score=51.46 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=36.6
Q ss_pred CCCccEEEEEEcCHHHHHHHHHhh-CCceeCCeeEEEEEccc
Q 043443 100 GEPRGFAFVQFVDPYEAAEAQHHM-NGKRFAGREISVVLAAE 140 (299)
Q Consensus 100 g~~~g~afVeF~~~~~A~~Al~~l-ng~~l~Gr~i~V~~a~~ 140 (299)
...+|+++|+|.+.++|++||+.| |+..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 456899999999999999999999 9999999 999998764
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.92 E-value=0.0053 Score=49.31 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=27.2
Q ss_pred EEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc
Q 043443 91 VYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK 126 (299)
Q Consensus 91 v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~ 126 (299)
+.|+.+. ...+|||||+|.+.++|++||+.+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4455543 367899999999999999999888754
No 221
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.26 E-value=0.51 Score=34.36 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc-------eeCCe
Q 043443 59 QNHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK-------RFAGR 131 (299)
Q Consensus 59 ~~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~-------~l~Gr 131 (299)
...+-|-|-|||..+-..++.-.....|---+|+.+ .|.|+|.|.+.++...||++|-+. +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 356788899999999999988888888877788776 378999999999999999877321 35566
Q ss_pred eEEEEE
Q 043443 132 EISVVL 137 (299)
Q Consensus 132 ~i~V~~ 137 (299)
.+.|--
T Consensus 82 icdvis 87 (129)
T 4eyt_A 82 ICDVIS 87 (129)
T ss_dssp EEEEEC
T ss_pred eeeeee
Confidence 555543
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.21 E-value=0.19 Score=35.16 Aligned_cols=68 Identities=10% Similarity=0.178 Sum_probs=45.2
Q ss_pred EEEEeCC-CCCCCHHHHHHHHhcCC-----CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEE
Q 043443 63 SLLVRNI-PLDCRPEELRAPFERFG-----VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVV 136 (299)
Q Consensus 63 ~l~V~nL-p~~~te~dL~~~F~~~G-----~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~ 136 (299)
+|||..- -..+...+|..++..-+ .|-.|+|.. .|.||+... +.|+.+++.|++..++|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 5666322 34567788888887654 455677753 489999976 56888999999999999999998
Q ss_pred Ecc
Q 043443 137 LAA 139 (299)
Q Consensus 137 ~a~ 139 (299)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.80 E-value=0.22 Score=47.99 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=45.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN 124 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln 124 (299)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 88889999999999999965 5555544 579999999999999999885
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=90.91 E-value=1.9 Score=40.57 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=15.5
Q ss_pred EEcCHHHHHHHHHhhCCceeCCeeEE
Q 043443 109 QFVDPYEAAEAQHHMNGKRFAGREIS 134 (299)
Q Consensus 109 eF~~~~~A~~Al~~lng~~l~Gr~i~ 134 (299)
.|.+.++.+.|..+|. .|+|..|.
T Consensus 147 aFV~F~~~e~A~~Ai~--~lng~~i~ 170 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYK--HADGKKID 170 (437)
T ss_pred EEEeeccHHHHHHHHH--HcCCCEEC
Confidence 5566677777777664 35676654
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=78.09 E-value=3.8 Score=33.42 Aligned_cols=58 Identities=22% Similarity=0.106 Sum_probs=39.0
Q ss_pred CCEEEEeCCCC-C--------CCHHHHHHHH--hcCCCEeEEEeccCCCCCCCccEEEEEEcC-HHHHHHHHH
Q 043443 61 HGSLLVRNIPL-D--------CRPEELRAPF--ERFGVVRDVYLPKDYYTGEPRGFAFVQFVD-PYEAAEAQH 121 (299)
Q Consensus 61 ~~~l~V~nLp~-~--------~te~dL~~~F--~~~G~I~~v~i~~d~~~g~~~g~afVeF~~-~~~A~~Al~ 121 (299)
+-+++|.|++. . ...++|.+.| ..|..+.-..+... ....|+|+|+|.. ..-...|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCChHHHHHHHH
Confidence 34678889987 2 3447899977 89988765444432 2457899999974 445555554
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=72.55 E-value=10 Score=25.15 Aligned_cols=55 Identities=7% Similarity=-0.051 Sum_probs=42.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
..+|.|.++.-..-...|+..+.. -.|..+.+-.. .+.+.|+|.+.++...||+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 357889999777778889999998 77887777543 46788888867777777775
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=66.65 E-value=18 Score=26.05 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=27.2
Q ss_pred CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc
Q 043443 87 VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK 126 (299)
Q Consensus 87 ~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~ 126 (299)
+|..|.++. ...||.||++...++...+|..+.|.
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 366666654 25899999999999998898877765
No 228
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=62.53 E-value=27 Score=22.73 Aligned_cols=56 Identities=13% Similarity=-0.011 Sum_probs=41.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+.+.-.|..+.+... .+.+.|+|. +.++...||+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 36778888665566789999998877877766543 467889985 567777787753
No 229
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=54.70 E-value=14 Score=27.13 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHH-hcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEccc
Q 043443 68 NIPLDCRPEELRAPF-ERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAE 140 (299)
Q Consensus 68 nLp~~~te~dL~~~F-~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~~ 140 (299)
.++.-+.-+||.... ..||.-.++.+.. ....|-..+.+|..+||+.|+-.. .-+.|+|-+..+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n--------~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTN--------NELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECS--------SSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEec--------ceEEEeccCHHHHHHHHHHHccCC-cccceEEEEecC
Confidence 456677878777655 4588877777663 257899999999999999887552 223334444433
No 230
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=52.71 E-value=38 Score=20.83 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=36.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc---CHHHHHHHHHhh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV---DPYEAAEAQHHM 123 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~---~~~~A~~Al~~l 123 (299)
+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4566676554455778888888877877776543 467888886 445556666543
No 231
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=52.01 E-value=42 Score=21.11 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=38.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|.. .++...+|..+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778887654455678888888877877776543 4678888863 45566666653
No 232
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=51.62 E-value=3.1 Score=30.95 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCEEEEeCCCCCCCHHH
Q 043443 60 NHGSLLVRNIPLDCRPEE 77 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~d 77 (299)
..++|||+|||+.+|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 446799999999998764
No 233
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=51.48 E-value=32 Score=28.60 Aligned_cols=28 Identities=4% Similarity=-0.044 Sum_probs=24.2
Q ss_pred CccEEEEEEcCHHHHHHHHHhhCCceeC
Q 043443 102 PRGFAFVQFVDPYEAAEAQHHMNGKRFA 129 (299)
Q Consensus 102 ~~g~afVeF~~~~~A~~Al~~lng~~l~ 129 (299)
-+||.|||=....+++.||+.|.+....
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 5899999999999999999988876443
No 234
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=51.31 E-value=42 Score=20.97 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=37.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC---HHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD---PYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~---~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 35778887654455778898988878887777543 3678888863 34455556543
No 235
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=50.92 E-value=3.1 Score=33.03 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc
Q 043443 76 EELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV 111 (299)
Q Consensus 76 ~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~ 111 (299)
+||.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 5667778888877654432 689999976
No 236
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=50.90 E-value=30 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=27.2
Q ss_pred CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCce
Q 043443 87 VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKR 127 (299)
Q Consensus 87 ~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~ 127 (299)
.|..|.... ..+||-|||=....+++.||+.+.+..
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 466665543 358999999999999999998775543
No 237
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=50.15 E-value=54 Score=21.85 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=41.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
..+|.|.++.-..-...|+..+.....|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 456888888766666789999998888888777543 467888885 355666777654
No 238
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=49.30 E-value=27 Score=22.36 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=39.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc---CHHHHHHHHHh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV---DPYEAAEAQHH 122 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~---~~~~A~~Al~~ 122 (299)
.+|.|.++.-..-...|+..+.....|..+.+... .+-+.|+|. +.++...||+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 36778888766667889999999888887776544 357888884 45566666664
No 239
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=47.57 E-value=49 Score=20.65 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC---HHHHHHHHHh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD---PYEAAEAQHH 122 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~---~~~A~~Al~~ 122 (299)
+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 5778888665556788899988877877777544 3677888863 4555566654
No 240
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=52.48 E-value=4.1 Score=30.46 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEE--EEEEcCHHHHHHHHHhhCCceeCC
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFA--FVQFVDPYEAAEAQHHMNGKRFAG 130 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~a--fVeF~~~~~A~~Al~~lng~~l~G 130 (299)
...+|.|..+ .++++|..|..+.+ +..+.+......|+. -|. +-.|.+.++|..|+..|....-..
T Consensus 24 ~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~ 91 (106)
T 2lfv_A 24 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQAK 91 (106)
Confidence 3456766544 45667777777775 344544432212221 222 237889999999999886554333
No 241
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=45.30 E-value=52 Score=20.28 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=38.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHH 122 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~ 122 (299)
++.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|. +.++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5788888766667788899988877877776543 367888886 34555666654
No 242
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.65 E-value=47 Score=23.63 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=36.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 64 LLVRNIPLDCRPEELRAPFER-FG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 64 l~V~nLp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
.|+..+...++..+|++.+++ |+ .|..|..+.-+ ...--|||.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~---~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP---RGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT---TSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC---CCceEEEEEcCCCCcHHHHHHh
Confidence 344456778999999988876 44 55566544322 1234699999877777665544
No 243
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=44.12 E-value=57 Score=20.41 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=39.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35777777666666778899988888877776543 367888886 345566666653
No 244
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=44.00 E-value=60 Score=20.66 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=37.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHhh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHHM 123 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~l 123 (299)
+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5677777554455678888888877877776543 3678888853 45666667654
No 245
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=43.06 E-value=14 Score=36.39 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHh----cCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhh
Q 043443 68 NIPLDCRPEELRAPFE----RFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123 (299)
Q Consensus 68 nLp~~~te~dL~~~F~----~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~l 123 (299)
.++.+.+--||..+|- .+|.|+++.|...+. .....+++|.|.+.++|..|+..|
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 3455555568888884 588999887765432 233567889999999999988765
No 246
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=42.37 E-value=92 Score=22.31 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=40.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~l 123 (299)
.+|.|.+|.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888766677889999998877877777543 4678899873 45566667653
No 247
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=42.05 E-value=45 Score=23.90 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=34.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC----CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhh
Q 043443 64 LLVRNIPLDCRPEELRAPFER-FG----VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123 (299)
Q Consensus 64 l~V~nLp~~~te~dL~~~F~~-~G----~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~l 123 (299)
|.+..+|..++.++|.+.+.. |. +...+.++-+ . --+|++.+-++.+.||..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--e-----GD~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--E-----GDPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--S-----SCCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--C-----CCcccccCHHHHHHHHHHH
Confidence 566678889999888766653 22 2223333321 1 2468899999999999854
No 248
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=41.76 E-value=42 Score=24.39 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHh-cCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc
Q 043443 68 NIPLDCRPEELRAPFE-RFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK 126 (299)
Q Consensus 68 nLp~~~te~dL~~~F~-~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~ 126 (299)
.++.-+.-+||+.... .||...++.++.+ .-.|-..+.+|..+||+.|+-.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 4566677788776664 5888888877643 5788899999999999987643
No 249
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=41.14 E-value=66 Score=20.29 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=39.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHh
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHH 122 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~ 122 (299)
..+|.|.++.-..-...|+..+.....|..+.+-.. .+.+.|+|.. .++...+|+.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357889998776667789999998878887776543 4678888864 2344555554
No 250
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=40.89 E-value=71 Score=20.59 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=40.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHhh
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHHM 123 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~l 123 (299)
..+|.|.++.-..-...|+..+.....|..+.+-.. .+.+.|+|.. .++...+|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 456888888777777889999988777766655443 3678888863 45566677654
No 251
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=40.85 E-value=56 Score=21.05 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
+|.|.++.-..-...|+..+.....|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778887665666778999988877877665433 367888885 345566667654
No 252
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=40.68 E-value=52 Score=22.55 Aligned_cols=56 Identities=9% Similarity=0.198 Sum_probs=38.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|. +.++...||+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35778777554455678898988878887777544 367888885 345666777654
No 253
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=40.58 E-value=47 Score=20.85 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=36.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+.....|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 35777777544445678888888776766666443 367888886 345566667654
No 254
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=39.33 E-value=69 Score=19.99 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=36.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc---CHHHHHHHHHhh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV---DPYEAAEAQHHM 123 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~---~~~~A~~Al~~l 123 (299)
+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5677777554455678888888877877766443 467888885 345556666654
No 255
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=38.03 E-value=76 Score=20.10 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=39.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC--HHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD--PYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~--~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 36788888766666788999988877887776543 3678888875 34455566544
No 256
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=37.69 E-value=26 Score=30.38 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=25.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEe
Q 043443 61 HGSLLVRNIPLDCRPEELRAPFERFGVVRDVYL 93 (299)
Q Consensus 61 ~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i 93 (299)
..-+.|+|||+.++...|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356889999999999999999987 55554443
No 257
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=37.48 E-value=1.3e+02 Score=22.66 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCC
Q 043443 75 PEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125 (299)
Q Consensus 75 e~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng 125 (299)
.+++.+.+..+-+|..|..+. |...-++.|.+.+.++.+..+..|.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 677888888999999998764 34456788899999999999988865
No 258
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=43.35 E-value=7.1 Score=28.56 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEec-------------cCC----CCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVRDVYLP-------------KDY----YTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~-------------~d~----~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
..+-|.|-|+|..+-..++.-.....|---+|+.+ .|. +.--..|.|+|.|.+.++...||++
T Consensus 17 qnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlaiqk 96 (137)
T 2lsl_A 17 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQK 96 (137)
Confidence 45667778888877666654333333322122211 110 0011258899999999999999887
Q ss_pred hC
Q 043443 123 MN 124 (299)
Q Consensus 123 ln 124 (299)
|-
T Consensus 97 ll 98 (137)
T 2lsl_A 97 LL 98 (137)
Confidence 63
No 259
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=36.68 E-value=97 Score=23.01 Aligned_cols=55 Identities=7% Similarity=0.083 Sum_probs=32.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5666666655556667777776666665544332 356777775 445556666554
No 260
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=36.51 E-value=14 Score=32.34 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=25.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEec
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLP 94 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~ 94 (299)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 357899999999999999999865555555444
No 261
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.78 E-value=47 Score=30.42 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=39.7
Q ss_pred EEEeCCCCCC----CHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCe
Q 043443 64 LLVRNIPLDC----RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGR 131 (299)
Q Consensus 64 l~V~nLp~~~----te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr 131 (299)
-+||||..-. ....+.++..+||.|..+.+. +.-+|...+++.|+.++.. +...+.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 4688886432 246677888899999888774 2456777889999888854 44444433
No 262
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=35.27 E-value=70 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=20.1
Q ss_pred CCCEeEEEeccCCCCCCCccEEEEE-EcCHHHHHHHHHhhC
Q 043443 85 FGVVRDVYLPKDYYTGEPRGFAFVQ-FVDPYEAAEAQHHMN 124 (299)
Q Consensus 85 ~G~I~~v~i~~d~~~g~~~g~afVe-F~~~~~A~~Al~~ln 124 (299)
+=.|+.|.|..|- ....+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHHH
Confidence 4578899998772 23445555 445444444444443
No 263
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=35.04 E-value=1e+02 Score=23.01 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=32.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHh-------cCCCEeEEEeccCCCCCCCccEEE-EEEcCHHHHHH
Q 043443 63 SLLVRNIPLDCRPEELRAPFE-------RFGVVRDVYLPKDYYTGEPRGFAF-VQFVDPYEAAE 118 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~-------~~G~I~~v~i~~d~~~g~~~g~af-VeF~~~~~A~~ 118 (299)
-|.+-.|...++++++.++.. +.-.|..+.+-.+......-.++| ++|++.++.+.
T Consensus 23 HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 23 HTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 344456777777776555543 345677777655533211134554 58888776543
No 264
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=34.81 E-value=54 Score=23.52 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHh-cCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCceeCCeeEEEEEcc
Q 043443 68 NIPLDCRPEELRAPFE-RFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 68 nLp~~~te~dL~~~F~-~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~l~Gr~i~V~~a~ 139 (299)
.++.-+.-++|+.... .||...++.++.+ .-.|-..+.+|..+||+.|+-.. .-+.|+|-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 3456677777776554 5888888777643 46788899999999999876432 23334444443
No 265
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=34.60 E-value=85 Score=19.66 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=38.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46888888766666778999988877877766443 467888885 345566666653
No 266
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=34.06 E-value=79 Score=19.12 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=36.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHH 122 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~ 122 (299)
+|.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|.. .++...+|+.
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5777777554445668888888777877766543 4678888863 4555666664
No 267
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=33.92 E-value=49 Score=24.35 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHh-cCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCc
Q 043443 68 NIPLDCRPEELRAPFE-RFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGK 126 (299)
Q Consensus 68 nLp~~~te~dL~~~F~-~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~ 126 (299)
.++.-+.-+||+.... .||...++.++.+ .-.|-..+.+|..+||+.|+-.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 3566677777776554 5888888777643 4678889999999999987643
No 268
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.91 E-value=22 Score=24.11 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=14.2
Q ss_pred CCCEeEEEeccCCCCCCCccEEEEEEcC
Q 043443 85 FGVVRDVYLPKDYYTGEPRGFAFVQFVD 112 (299)
Q Consensus 85 ~G~I~~v~i~~d~~~g~~~g~afVeF~~ 112 (299)
.|.|+.|... +..|||.|+|
T Consensus 27 lGtV~kV~~~--------~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVDSA--------REVCLVQFED 46 (68)
T ss_dssp EEEEEEEETT--------TTEEEEEETT
T ss_pred EeEEEEEecC--------CcEEEEEEcc
Confidence 3667776543 4689999976
No 269
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=33.18 E-value=1e+02 Score=22.48 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=42.7
Q ss_pred CEEEEeCCCCCCCHHH--HHHHHh----c-C---C-----CEeEEEeccCCCC--CCCccEEEEEEcCHHHHH---HHHH
Q 043443 62 GSLLVRNIPLDCRPEE--LRAPFE----R-F---G-----VVRDVYLPKDYYT--GEPRGFAFVQFVDPYEAA---EAQH 121 (299)
Q Consensus 62 ~~l~V~nLp~~~te~d--L~~~F~----~-~---G-----~I~~v~i~~d~~~--g~~~g~afVeF~~~~~A~---~Al~ 121 (299)
+.|.|-+||....+.. ++.+|. . | + +|..++-...+.+ .......+|.|....+-+ .|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5789999998633222 333332 1 2 2 3555544332211 123456788887766544 4444
Q ss_pred hhCCceeCCeeEEEEE
Q 043443 122 HMNGKRFAGREISVVL 137 (299)
Q Consensus 122 ~lng~~l~Gr~i~V~~ 137 (299)
......+.|..|.+..
T Consensus 84 ~k~~vtykg~pirlsa 99 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLTV 99 (100)
T ss_dssp HHCCEEETTEEEEEEE
T ss_pred HhCceeeCCcceeecC
Confidence 4556788999998753
No 270
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=33.01 E-value=63 Score=25.29 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=34.0
Q ss_pred EEeCCCCCCCHHHHHHHHhc-CC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 65 LVRNIPLDCRPEELRAPFER-FG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 65 ~V~nLp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
||.-+...++..+|++.+++ |+ .|..|..+.-+ ...--|||.+..-.+|.+....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~---~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP---NGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT---TSCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC---CCceEEEEEeCCCCcHHHHHHh
Confidence 34446678899888877776 34 45566544322 1234589999876666655443
No 271
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=32.25 E-value=1.4e+02 Score=22.21 Aligned_cols=57 Identities=7% Similarity=0.065 Sum_probs=33.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHh-------cCCCEeEEEeccCCCC-CCCc--cEEE-EEEcCHHHHHHH
Q 043443 63 SLLVRNIPLDCRPEELRAPFE-------RFGVVRDVYLPKDYYT-GEPR--GFAF-VQFVDPYEAAEA 119 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~-------~~G~I~~v~i~~d~~~-g~~~--g~af-VeF~~~~~A~~A 119 (299)
-|.+-.|...++++++.+++. +.-.|..+.+-.+... +... -++| ++|++.++.+.-
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y 90 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAY 90 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHH
Confidence 445567888888876655543 3556777766554321 2222 3444 589888776543
No 272
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=31.62 E-value=84 Score=23.22 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=36.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++...+|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 45777777655455667777777766766665443 356778775 345666666654
No 273
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.55 E-value=66 Score=25.42 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=34.0
Q ss_pred EEeCCCCCCCHHHHHHHHhc-CC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 65 LVRNIPLDCRPEELRAPFER-FG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 65 ~V~nLp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
||.-+...++..+|++.+++ |+ .|..|..+.-+ ...--|||.+..-.+|.+....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p---~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI---TGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---TSCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC---CCcEEEEEEcCCCCcHHHHHHh
Confidence 33445678899888887776 44 45566544322 1234599999876666655443
No 274
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=31.27 E-value=1.6e+02 Score=21.89 Aligned_cols=55 Identities=5% Similarity=-0.087 Sum_probs=31.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc------CCCEeEEEeccCCCC----CCC--ccEEE-EEEcCHHHHH
Q 043443 63 SLLVRNIPLDCRPEELRAPFER------FGVVRDVYLPKDYYT----GEP--RGFAF-VQFVDPYEAA 117 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~------~G~I~~v~i~~d~~~----g~~--~g~af-VeF~~~~~A~ 117 (299)
-|.+-.|...++++++.++... .-.|..+.+-.+... +.. -.+|| ++|++.++.+
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~ 90 (120)
T 3bn7_A 23 HQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQK 90 (120)
T ss_dssp EEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHH
Confidence 3444578888888876555433 345566666554332 122 23444 5888876654
No 275
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=30.27 E-value=33 Score=29.26 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=22.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEE
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDV 91 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v 91 (299)
..+.|+|||+.++...|..++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 358899999999999888888754334433
No 276
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=29.78 E-value=72 Score=22.60 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=33.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHH
Q 043443 64 LLVRNIPLDCRPEELRAPFER-FG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEA 119 (299)
Q Consensus 64 l~V~nLp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~A 119 (299)
.|+..+...++..+|++.+++ |+ .|..|..+.-+ ...--|||.+..-++|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~---~~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM---DGEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---TSSEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---CCceEEEEEECCCCcHHHH
Confidence 344556788999999988876 44 55666544332 1234699999776554443
No 277
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=29.69 E-value=32 Score=31.16 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=19.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhc
Q 043443 62 GSLLVRNIPLDCRPEELRAPFER 84 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~ 84 (299)
..++|+|||++++..-|..+|..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999988888864
No 278
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.16 E-value=26 Score=25.50 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=15.2
Q ss_pred EeCCCCCCCHHHHHHHHhc
Q 043443 66 VRNIPLDCRPEELRAPFER 84 (299)
Q Consensus 66 V~nLp~~~te~dL~~~F~~ 84 (299)
|.+|...||-+||...|.+
T Consensus 21 VsGvT~~TTC~DVV~aL~~ 39 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQ 39 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHH
T ss_pred EECCCCCCcHHHHHHHHHh
Confidence 4578899999999886654
No 279
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=28.56 E-value=45 Score=30.23 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=35.2
Q ss_pred EEeCCCCC---CCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 65 LVRNIPLD---CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 65 ~V~nLp~~---~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
+||||..- -....+.+++.+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 35666432 2346788888999999877764 3567888899999888864
No 280
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=28.55 E-value=1e+02 Score=18.76 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=37.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHH 122 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~ 122 (299)
+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888665556778888888777877766543 4678888863 3455566654
No 281
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=28.37 E-value=61 Score=25.65 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=32.4
Q ss_pred EeCCCCCCCHHHHHHHHhc-CC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 66 VRNIPLDCRPEELRAPFER-FG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 66 V~nLp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
|..+...++..+|++.+++ |+ .|..|..+.-+ ...--|||.+..-.+|.+....
T Consensus 93 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~---~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 93 VFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP---DGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT---TSSEEEEEEECTTSCHHHHHGG
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC---CCceEEEEEcCCCCcHHHHHHh
Confidence 3345667888888777765 33 45566544322 1234689999876666655443
No 282
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.62 E-value=93 Score=21.85 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=34.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc-CHHHHHHHHHhh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV-DPYEAAEAQHHM 123 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~-~~~~A~~Al~~l 123 (299)
+|.|. +.-..-...|+..+.+.-.|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHHh
Confidence 45555 4333334678888888877877776544 356778875 456666776643
No 283
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=27.57 E-value=1.3e+02 Score=22.08 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=31.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-------CCCEeEEEeccCCCCCC--CccEE-EEEEcCHHHHHH
Q 043443 63 SLLVRNIPLDCRPEELRAPFER-------FGVVRDVYLPKDYYTGE--PRGFA-FVQFVDPYEAAE 118 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~-------~G~I~~v~i~~d~~~g~--~~g~a-fVeF~~~~~A~~ 118 (299)
.|.+-.|...++++++.++... .-.|..+.+-.+.. +. .-.++ +++|++.++.+.
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 3445578888888876665543 33566666655432 22 22344 458888776653
No 284
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=27.28 E-value=50 Score=20.73 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=32.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
+|.|.++.-..-...|+..+... .|..+.+-.. .+.+.|+|...++...+|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 45666664443446677888777 6766665443 36788888765444455543
No 285
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=27.12 E-value=37 Score=30.80 Aligned_cols=48 Identities=21% Similarity=0.048 Sum_probs=32.3
Q ss_pred EEeCCCCC---CCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHH
Q 043443 65 LVRNIPLD---CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121 (299)
Q Consensus 65 ~V~nLp~~---~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~ 121 (299)
+||||..- -....+.++..+||.|..+.+.. .-+|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHH
Confidence 46776432 23456788889999998887742 33566677888777764
No 286
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.10 E-value=18 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=24.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEec
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLP 94 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~ 94 (299)
-..|+|||+.++...|..++.....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34799999999999999999876666554443
No 287
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=27.01 E-value=31 Score=29.30 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=22.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeE
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRD 90 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~ 90 (299)
..+.|+|||+.++...|..++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 35889999999999999999876433333
No 288
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=26.81 E-value=1.3e+02 Score=19.17 Aligned_cols=55 Identities=7% Similarity=0.076 Sum_probs=35.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHhh
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHHM 123 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~l 123 (299)
+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|.|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5777777554445668888888777766655432 4678888853 45556666643
No 289
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=26.24 E-value=1.8e+02 Score=20.64 Aligned_cols=54 Identities=11% Similarity=0.008 Sum_probs=32.2
Q ss_pred EEEeCCCCCCCHHHHHHHHh-------cCCCEeEEEeccCCCCCCCc--cEE-EEEEcCHHHHHH
Q 043443 64 LLVRNIPLDCRPEELRAPFE-------RFGVVRDVYLPKDYYTGEPR--GFA-FVQFVDPYEAAE 118 (299)
Q Consensus 64 l~V~nLp~~~te~dL~~~F~-------~~G~I~~v~i~~d~~~g~~~--g~a-fVeF~~~~~A~~ 118 (299)
|.+-.|...++++++.++.. +.-.|..+.+-.+.. +... .++ +++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 44456888888776555543 355677777665532 2222 334 458888776653
No 290
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=25.99 E-value=1.2e+02 Score=19.28 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHh
Q 043443 73 CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 73 ~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
.+|++.+.....| .+-.|-.|.+.++|+.+|..
T Consensus 18 ~sW~ec~~qV~g~-----------------~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 18 LTWNECRAQVDRF-----------------PAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp SSHHHHHHHHTTC-----------------TTCEEEEESSHHHHHHHHHC
T ss_pred CCHHHHHHHhcCC-----------------CCCccCCCCCHHHHHHHHHh
Confidence 4778777766544 35678889999999998863
No 291
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.65 E-value=37 Score=23.63 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=14.3
Q ss_pred CCCEeEEEeccCCCCCCCccEEEEEEcC
Q 043443 85 FGVVRDVYLPKDYYTGEPRGFAFVQFVD 112 (299)
Q Consensus 85 ~G~I~~v~i~~d~~~g~~~g~afVeF~~ 112 (299)
.|.|++|... ...|||.|++
T Consensus 44 LGTI~kV~~~--------~e~ClV~F~D 63 (79)
T 2m0o_A 44 LGTIKKVDSA--------REVCLVQFED 63 (79)
T ss_dssp EEEEEEEETT--------TTEEEEEETT
T ss_pred eEEEEEeccC--------CCEEEEEEcC
Confidence 3677776554 4689999986
No 292
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.58 E-value=95 Score=24.67 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=32.7
Q ss_pred EEeCCCCCCCHHHHHHHHhc-CC-CEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHH
Q 043443 65 LVRNIPLDCRPEELRAPFER-FG-VVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121 (299)
Q Consensus 65 ~V~nLp~~~te~dL~~~F~~-~G-~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~ 121 (299)
||..+...++..+|++.++. |+ .|..|..+.-+ + ..--|||.+..-.+|.....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~--~-~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP--D-GEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS--S-SCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcC--C-CceEEEEEECCCCcHHHHHH
Confidence 34456678888888887775 44 55566544322 1 23458999976655544433
No 293
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=25.01 E-value=1.6e+02 Score=19.88 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=39.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcC----HHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVD----PYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~----~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888766677889999988877877766543 4678888863 45556666654
No 294
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=24.52 E-value=2.3e+02 Score=22.39 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=40.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc----CHHHHHHHHHhh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV----DPYEAAEAQHHM 123 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~----~~~~A~~Al~~l 123 (299)
.+|.|.++.-..-...|+..+...-.|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA------EGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46888888665566779999999888888777543 467889885 456667777654
No 295
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=24.00 E-value=38 Score=32.16 Aligned_cols=43 Identities=16% Similarity=0.019 Sum_probs=28.1
Q ss_pred HHHHHH--hcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHH
Q 043443 77 ELRAPF--ERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ 120 (299)
Q Consensus 77 dL~~~F--~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al 120 (299)
+|..+| ..+|.|+.+.|...+. ......+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 456666 3689999988765542 122345788999877766544
No 296
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.73 E-value=15 Score=24.44 Aligned_cols=10 Identities=30% Similarity=0.487 Sum_probs=8.0
Q ss_pred ccEEEEEEcC
Q 043443 103 RGFAFVQFVD 112 (299)
Q Consensus 103 ~g~afVeF~~ 112 (299)
+..|||.|++
T Consensus 35 ~~~ClV~FeD 44 (63)
T 2e5q_A 35 KQSCLVTFED 44 (63)
T ss_dssp TSEEEEEETT
T ss_pred CCEEEEEEcc
Confidence 4689999975
No 297
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.62 E-value=89 Score=22.88 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHhc-CC---CEeEE-EeccCCCCCCCccEEEEEEcCHHHHHHH
Q 043443 71 LDCRPEELRAPFER-FG---VVRDV-YLPKDYYTGEPRGFAFVQFVDPYEAAEA 119 (299)
Q Consensus 71 ~~~te~dL~~~F~~-~G---~I~~v-~i~~d~~~g~~~g~afVeF~~~~~A~~A 119 (299)
..++..+|++.+.+ |+ .+..| .|......++..|||.| |++.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677888877764 33 22223 34444344566677765 6676665543
No 298
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=23.47 E-value=1.6e+02 Score=22.94 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHhcCCCEeEEEeccCC-----CC----------CCCccEEEEEEcCHHHHHHHHHh
Q 043443 78 LRAPFERFGVVRDVYLPKDY-----YT----------GEPRGFAFVQFVDPYEAAEAQHH 122 (299)
Q Consensus 78 L~~~F~~~G~I~~v~i~~d~-----~~----------g~~~g~afVeF~~~~~A~~Al~~ 122 (299)
..++|..||.+..|...-+. .| +..--|.+|+|.+.+...+|..+
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 44789999987665443221 11 12234889999999888877743
No 299
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=23.45 E-value=17 Score=27.71 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred cEEEEEEcCHHHHHHHHHhhCCceeCC
Q 043443 104 GFAFVQFVDPYEAAEAQHHMNGKRFAG 130 (299)
Q Consensus 104 g~afVeF~~~~~A~~Al~~lng~~l~G 130 (299)
-++|++|++...+..|+..|++....|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ---------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCC
Confidence 467888888888888888888776544
No 300
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.31 E-value=2.4e+02 Score=21.23 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHH-HhhC
Q 043443 69 IPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ-HHMN 124 (299)
Q Consensus 69 Lp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al-~~ln 124 (299)
++.....+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+ +.|.
T Consensus 76 ~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 76 LKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp ESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred ECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 44333467888999999999999887 4555567788999999998887 3443
No 301
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.29 E-value=29 Score=24.98 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=17.5
Q ss_pred EeCCCCCCCHHHHHHHHhcC
Q 043443 66 VRNIPLDCRPEELRAPFERF 85 (299)
Q Consensus 66 V~nLp~~~te~dL~~~F~~~ 85 (299)
|-+|+..++.++|+..|.+.
T Consensus 22 vLgv~~~as~~eIk~ayr~l 41 (99)
T 2yua_A 22 LLGVPSTATQAQIKAAYYRQ 41 (99)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 66899999999999999764
No 302
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=23.06 E-value=44 Score=32.37 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHh----cCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhC
Q 043443 69 IPLDCRPEELRAPFE----RFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMN 124 (299)
Q Consensus 69 Lp~~~te~dL~~~F~----~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~ln 124 (299)
++...+.-+|..+|. .||.|+.+.|...+.. .....+++.|.+.++|.+|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 333333345666664 4678888877654321 224577899999999998887653
No 303
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.82 E-value=2.7e+02 Score=21.70 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhh
Q 043443 68 NIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123 (299)
Q Consensus 68 nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~l 123 (299)
.++. ...+++.+.+..+-+|..|..+ +|...-++.|.+.+.++.+..++.|
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 4543 3567888999999999999876 3455567889999999988877554
No 304
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=22.71 E-value=1.1e+02 Score=22.66 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHhc-CC---CEeEE-EeccCCCCCCCccEEEEEEcCHHHHHH
Q 043443 72 DCRPEELRAPFER-FG---VVRDV-YLPKDYYTGEPRGFAFVQFVDPYEAAE 118 (299)
Q Consensus 72 ~~te~dL~~~F~~-~G---~I~~v-~i~~d~~~g~~~g~afVeF~~~~~A~~ 118 (299)
.++..+|++.+.+ |+ .+..| .|......+...|||.| |++.+.|++
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4677777776654 33 22222 34444345566777765 777776654
No 305
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.50 E-value=1.8e+02 Score=21.48 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=36.1
Q ss_pred CHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHH-HhhC
Q 043443 74 RPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQ-HHMN 124 (299)
Q Consensus 74 te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al-~~ln 124 (299)
..+++.+.+..+.+|..|..+ +|...-++.|.+.+.++.+..+ +.|.
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 456778888889999998765 4455567789999999998888 5554
No 306
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=22.47 E-value=2.4e+02 Score=20.99 Aligned_cols=25 Identities=4% Similarity=-0.049 Sum_probs=18.5
Q ss_pred ccEEEEEEcCHHHHHHHHHhhCCcee
Q 043443 103 RGFAFVQFVDPYEAAEAQHHMNGKRF 128 (299)
Q Consensus 103 ~g~afVeF~~~~~A~~Al~~lng~~l 128 (299)
+..+.|.+++.+.|.++|+. .|..+
T Consensus 111 ~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 111 VANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 56677888888888888876 55544
No 307
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.41 E-value=46 Score=22.50 Aligned_cols=10 Identities=30% Similarity=0.580 Sum_probs=8.5
Q ss_pred ccEEEEEEcC
Q 043443 103 RGFAFVQFVD 112 (299)
Q Consensus 103 ~g~afVeF~~ 112 (299)
.+.|+|.|++
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5899999975
No 308
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=22.33 E-value=2.4e+02 Score=20.78 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred EEEEeCCCCCCCHHHH-------HHHHh----cCCCEeEEEeccCCCCCCCccEEE-EEEcCHHHHHH
Q 043443 63 SLLVRNIPLDCRPEEL-------RAPFE----RFGVVRDVYLPKDYYTGEPRGFAF-VQFVDPYEAAE 118 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL-------~~~F~----~~G~I~~v~i~~d~~~g~~~g~af-VeF~~~~~A~~ 118 (299)
-|.+-.|...+++++. ++.|. +.-.|..+.+-.+......-.+|| ++|++.++.+.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~~ 90 (118)
T 3fmb_A 23 HIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVKF 90 (118)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHHH
Confidence 3444567778887653 23343 233566666655532222233444 58988877653
No 309
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.21 E-value=2.4e+02 Score=23.82 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=44.3
Q ss_pred CCEEEEeCCCCCCC--HHHHHHHHhc-----CCC--------EeEEEeccCCCC--CCCccEEEEEEcCHHHHHH---HH
Q 043443 61 HGSLLVRNIPLDCR--PEELRAPFER-----FGV--------VRDVYLPKDYYT--GEPRGFAFVQFVDPYEAAE---AQ 120 (299)
Q Consensus 61 ~~~l~V~nLp~~~t--e~dL~~~F~~-----~G~--------I~~v~i~~d~~~--g~~~g~afVeF~~~~~A~~---Al 120 (299)
.+.|.|-+||.... +..++.+|.. |.. |..+.-...+.+ .......+|.|....+-+. |.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46899999999876 4444444432 432 333332211110 1123467788877665544 44
Q ss_pred HhhCCceeCCeeEEEEEcc
Q 043443 121 HHMNGKRFAGREISVVLAA 139 (299)
Q Consensus 121 ~~lng~~l~Gr~i~V~~a~ 139 (299)
.......+.|.+|.+....
T Consensus 132 R~k~~vtykG~pIrlsaDf 150 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVDL 150 (233)
T ss_dssp HTTSCEEETTEEEEEEECC
T ss_pred HHhcccccCCCceEEeCCC
Confidence 4445778899998876643
No 310
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.05 E-value=89 Score=23.46 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=23.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCEe
Q 043443 60 NHGSLLVRNIPLDCRPEELRAPFERFGVVR 89 (299)
Q Consensus 60 ~~~~l~V~nLp~~~te~dL~~~F~~~G~I~ 89 (299)
...+|+|.++. ..+.++|++++..+|...
T Consensus 24 ~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v 52 (129)
T 2d8m_A 24 QGVVVVLSGFQ-NPFRSELRDKALELGAKY 52 (129)
T ss_dssp TTEEEEEESCC-TTHHHHHHHHHHHTTEEE
T ss_pred CCeEEEEeCCC-cHHHHHHHHHHHHcCCEE
Confidence 46788898886 567789999999998653
No 311
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.01 E-value=2.6e+02 Score=21.06 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCC
Q 043443 68 NIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNG 125 (299)
Q Consensus 68 nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng 125 (299)
.++ ....+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....++.|..
T Consensus 74 ~~~-~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVK-AGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EEC-TTCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEC-cccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 344 34567888999999999999886 345556778899999998888765543
No 312
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=22.00 E-value=1.1e+02 Score=22.48 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHhc-CC---CEeEE-EeccCCCCCCCccEEEEEEcCHHHHHH
Q 043443 71 LDCRPEELRAPFER-FG---VVRDV-YLPKDYYTGEPRGFAFVQFVDPYEAAE 118 (299)
Q Consensus 71 ~~~te~dL~~~F~~-~G---~I~~v-~i~~d~~~g~~~g~afVeF~~~~~A~~ 118 (299)
..++..+|++.+.+ |+ .+..| .|......++..|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677887777654 23 22222 34444445666777765 777666653
No 313
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=21.96 E-value=2.2e+02 Score=20.28 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=32.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHh-------cCCCEeEEEeccCCCC---CCCcc--EE-EEEEcCHHHHHH
Q 043443 63 SLLVRNIPLDCRPEELRAPFE-------RFGVVRDVYLPKDYYT---GEPRG--FA-FVQFVDPYEAAE 118 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~-------~~G~I~~v~i~~d~~~---g~~~g--~a-fVeF~~~~~A~~ 118 (299)
.|.+-.|...++++++.++.. +.-.|..+.+-.+... +...+ ++ +++|++.++.+.
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 444557888888887655543 3445666666554321 22222 44 458988877653
No 314
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.83 E-value=1.7e+02 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.3
Q ss_pred CccEEEEEEcCHHHHHHHHH
Q 043443 102 PRGFAFVQFVDPYEAAEAQH 121 (299)
Q Consensus 102 ~~g~afVeF~~~~~A~~Al~ 121 (299)
.....+|+|.+.+.|..+++
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 45678999999999988764
No 315
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=21.76 E-value=1.8e+02 Score=21.87 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=42.0
Q ss_pred CEEEEeCCCCCCCHHHHH---HHHhcCCCEeEEEeccCCCCCCCccEEEEEEc--CHHHHHHHHHhh-------CCc---
Q 043443 62 GSLLVRNIPLDCRPEELR---APFERFGVVRDVYLPKDYYTGEPRGFAFVQFV--DPYEAAEAQHHM-------NGK--- 126 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~---~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~--~~~~A~~Al~~l-------ng~--- 126 (299)
-.|.|.++|..+..+-.+ .+-..|..-....|+ |...|...|.|. +.+..++||+.| .|+
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 467788998776543221 122234322233333 233577778885 788888888655 333
Q ss_pred eeCCeeEEEEEc
Q 043443 127 RFAGREISVVLA 138 (299)
Q Consensus 127 ~l~Gr~i~V~~a 138 (299)
.|.|..|.|.+.
T Consensus 118 tl~gn~l~i~it 129 (170)
T 4hhu_A 118 TLSGNRLVIVIT 129 (170)
T ss_dssp EECSSEEEEEEE
T ss_pred EEeCCEEEEEEe
Confidence 367777777664
No 316
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.39 E-value=52 Score=23.07 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.6
Q ss_pred EeCCCCCC-CHHHHHHHHhc
Q 043443 66 VRNIPLDC-RPEELRAPFER 84 (299)
Q Consensus 66 V~nLp~~~-te~dL~~~F~~ 84 (299)
|=|||..+ ||.+|.++|.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 45888876 89999999976
No 317
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.35 E-value=1e+02 Score=23.93 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=27.0
Q ss_pred EeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhhCCce
Q 043443 88 VRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKR 127 (299)
Q Consensus 88 I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~lng~~ 127 (299)
|..|.++.. ..||.||++...++...+|..+.|..
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 566666532 47999999999988889988777653
No 318
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=21.18 E-value=1.7e+02 Score=23.72 Aligned_cols=49 Identities=2% Similarity=-0.079 Sum_probs=32.8
Q ss_pred CEEEEeCCCCCCCHHH--------HHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCH
Q 043443 62 GSLLVRNIPLDCRPEE--------LRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDP 113 (299)
Q Consensus 62 ~~l~V~nLp~~~te~d--------L~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~ 113 (299)
.+=||-.||..++.++ ++++|..+|-|.++.|..+. ...-.|.|-|.+.
T Consensus 71 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~---~~NpHaHim~t~R 127 (185)
T 2ns6_A 71 FKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG---GENPHCHLMISER 127 (185)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET---TTEEEEEEEECCB
T ss_pred EEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC---CCCceEEEEEeec
Confidence 4445667999998765 44556678888888887642 2345777777653
No 319
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=20.70 E-value=86 Score=22.47 Aligned_cols=55 Identities=4% Similarity=0.035 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHhcCCCEeEEEe-ccCCCCCCCccEEEEEEc--CHHHHHHHHHhhCC
Q 043443 71 LDCRPEELRAPFERFGVVRDVYL-PKDYYTGEPRGFAFVQFV--DPYEAAEAQHHMNG 125 (299)
Q Consensus 71 ~~~te~dL~~~F~~~G~I~~v~i-~~d~~~g~~~g~afVeF~--~~~~A~~Al~~lng 125 (299)
..+.+-.|-++..+||.-..|.. ..+...+..-|.-+|++. +.++.++|+..|..
T Consensus 30 ~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 30 STTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp ESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34556667777777774333211 111223455688889987 46778888887743
No 320
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=20.68 E-value=68 Score=30.12 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHh----cCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHHhh
Q 043443 70 PLDCRPEELRAPFE----RFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHM 123 (299)
Q Consensus 70 p~~~te~dL~~~F~----~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~~l 123 (299)
..+.+.-+|..+|. .||.|+.+.|...+. ......+++.|.+.++|.+|+..+
T Consensus 195 ~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 195 KKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp SCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 33334445666664 467888887765432 123456889999999998888766
No 321
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=20.40 E-value=1.7e+02 Score=18.40 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=35.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEc-CHHHHHHHHHh
Q 043443 62 GSLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFV-DPYEAAEAQHH 122 (299)
Q Consensus 62 ~~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~-~~~~A~~Al~~ 122 (299)
.+|.| ++.=..-...|+..+.....| .+.+-.. .+-+.|+|. +.++...||+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~------~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLP------NKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcC------CCEEEEEecCCHHHHHHHHHH
Confidence 35667 776554567788888877677 7776544 345677774 56667777764
No 322
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=20.23 E-value=1.2e+02 Score=27.59 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=29.9
Q ss_pred EEeCCCCC--CCHHHHHHHHhcCCCEeEEEeccCCCCCCCccEEEEEEcCHHHHHHHHH
Q 043443 65 LVRNIPLD--CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQH 121 (299)
Q Consensus 65 ~V~nLp~~--~te~dL~~~F~~~G~I~~v~i~~d~~~g~~~g~afVeF~~~~~A~~Al~ 121 (299)
+||||..- .....|.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 19 ~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 19 LIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ---------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred eeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 45665332 2345678888999999887764 345777788888888874
No 323
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=20.22 E-value=1.8e+02 Score=20.69 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=37.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCEeEEEec-cCCCCCCCccEEEEEEcC-HHHHHHHHHhhC
Q 043443 63 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLP-KDYYTGEPRGFAFVQFVD-PYEAAEAQHHMN 124 (299)
Q Consensus 63 ~l~V~nLp~~~te~dL~~~F~~~G~I~~v~i~-~d~~~g~~~g~afVeF~~-~~~A~~Al~~ln 124 (299)
.|.|.-....+.+-.|-++..+||.-..|..- .+...+..-|+-+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 44444344456667788888888854443211 122234556888888874 556677777764
Done!