BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043444
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518
E C +C+ ++E +R+LPC+HE+H CVDKWLK + CP+CR D
Sbjct: 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRAD 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
+C ICL+ EEG+ +R LPC H +H CVD+WL + CP+CR D+
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDI 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKW 504
PA + +D+ P + A G + C IC +EY +GD LPCHH +H CV W
Sbjct: 16 PASKESIDALPEILVTEDHGAVG--QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 505 LKEIHGVCPLCR 516
L++ G CP+CR
Sbjct: 74 LQK-SGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 473 QCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
+C +CLAE E+G+ R LP C H +H CVD WL H CPLCR V
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNS 529
+ C +CL +++ D + + PC H +H C+ KWL E+ VCPLC V Q A S S
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLCNMPVLQLAQLSGPS 72
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
+C +C +Y G+ +R LPC+H +H SC+ WL++ H CP+CR+ +
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSL 62
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS 527
++C IC+ +G +LPC H + C+DKW + H CP+CR + GA ESS
Sbjct: 16 EECCICM----DGRADLILPCAHSFCQKCIDKW-SDRHRNCPICRLQM-TGANESS 65
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 472 DQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRD 518
D C C AE ++ D + + C+H +H C+ W+K+ + CPLC++D
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQD 73
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
QC IC + E L C H + C+++W+K CP+CR+D++
Sbjct: 66 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIK 109
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
QC IC + E L C H + C+++W+K CP+CR+D++
Sbjct: 55 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIK 98
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
QC IC + E L C H + C+++W+K CP+CR+D++
Sbjct: 55 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIK 98
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 492 CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
C+H +H C+ +WLK VCPL R+
Sbjct: 57 CNHAFHFHCISRWLK-TRQVCPLDNRE 82
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 470 EPDQCYICLAEY-EEGDRIRLLPCHHEYHMSCVDKWLK-EIHGV-CPLCRRDVR 520
E +C IC+ + EE R +LL C H C++K L I+GV CP C + R
Sbjct: 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 492 CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
C+H +H C+ +WLK VCPL R+
Sbjct: 65 CNHAFHFHCISRWLK-TRQVCPLDNRE 90
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 492 CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
C+H +H C+ +WLK VCPL R+
Sbjct: 84 CNHAFHFHCISRWLK-TRQVCPLDNRE 109
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 492 CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
C+H +H C+ +WLK VCPL R+
Sbjct: 75 CNHAFHFHCISRWLK-TRQVCPLDNRE 100
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 492 CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
C+H +H C+ +WLK VCPL R+
Sbjct: 73 CNHAFHFHCISRWLK-TRQVCPLDNRE 98
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 492 CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
C+H +H C+ +WLK VCPL R+
Sbjct: 73 CNHAFHFHCISRWLK-TRQVCPLDNRE 98
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 492 CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
C+H +H C+ +WLK VCPL R+
Sbjct: 67 CNHAFHFHCISRWLK-TRQVCPLDNRE 92
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 473 QCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCR 516
+C+IC + + RL P C SC+ +WL E CP CR
Sbjct: 24 RCFICXEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCR 65
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA-TESSNSE 530
++C ICL + + LPC H + C+ +W+++ + CPLC+ V T S+SE
Sbjct: 6 ERCPICLED--PSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESVVHTIESDSE 62
Query: 531 I 531
Sbjct: 63 F 63
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
C IC E +++ PC H SC+ W + CP CR +++
Sbjct: 29 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
C IC E +++ PC H SC+ W + CP CR +++
Sbjct: 27 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
C IC E +++ PC H SC+ W + CP CR +++
Sbjct: 30 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDK 503
P P+ D + + E G C IC E D+ +++ PC H SC+
Sbjct: 311 PTPQ---DHIKVTQEQYELXCEMGSTFQLCKIC----AENDKDVKIEPCGHLMCTSCLTS 363
Query: 504 WLKEIHGVCPLCRRDVR 520
W + CP CR +++
Sbjct: 364 WQESEGQGCPFCRCEIK 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 466 EGGVEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
E G C IC E D+ +++ PC H SC+ W + CP CR +++
Sbjct: 329 EMGSTFQLCKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDK 503
P P+ D + + E G C IC E D+ +++ PC H SC+
Sbjct: 309 PTPQ---DHIKVTQEQYELYCEMGSTFQLCKIC----AENDKDVKIEPCGHLMCTSCLTS 361
Query: 504 WLKEIHGVCPLCRRDVR 520
W + CP CR +++
Sbjct: 362 WQESEGQGCPFCRCEIK 378
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDK 503
P P+ D + + E G C IC E D+ +++ PC H SC+
Sbjct: 309 PTPQ---DHIKVTQEQYELYCEMGSTFQLCKIC----AENDKDVKIEPCGHLMCTSCLTS 361
Query: 504 WLKEIHGVCPLCRRDVR 520
W + CP CR +++
Sbjct: 362 WQESEGQGCPFCRCEIK 378
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 466 EGGVEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
E G C IC E D+ +++ PC H SC+ W + CP CR +++
Sbjct: 333 EMGSTFQLCKIC----AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG--VCPLCRRDVRQGATESS 527
+C ICL +E + C H + C+ K L + G CPLC+ D+ + + + S
Sbjct: 23 ECPICLELIKEPVSTK---CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMS--CVDKWLKEIHGVCPLCRR 517
+P +C +C+ E E D I PC Y + C + + +G+CP CR+
Sbjct: 10 DPVECPLCM-EPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 474 CYICLAEYEEGDRI-RLLPCHHEYHMSCVDKWLKEIHGVCPLC 515
C ICL + + +LPC H H +C ++ LKE + CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,630,018
Number of Sequences: 62578
Number of extensions: 577149
Number of successful extensions: 972
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 42
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)