BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043444
(534 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P+ KKGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 511 VCPLCRRDV--RQGATES 526
CP+C++ V QG ++S
Sbjct: 277 TCPVCKQKVVPSQGDSDS 294
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P+ KKGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 511 VCPLCRRDV 519
CP+C++ V
Sbjct: 277 TCPVCKQKV 285
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P+ KKGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 511 VCPLCRRDV 519
CP+C++ V
Sbjct: 277 TCPVCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P+ KKGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 511 VCPLCRRDV 519
CP+C++ V
Sbjct: 277 TCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P+ KKGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 511 VCPLCRRDV 519
CP+C++ V
Sbjct: 277 TCPVCKQKV 285
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P+ KKGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 511 VCPLCRRDV 519
CP+C++ V
Sbjct: 277 TCPVCKQKV 285
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P ++KGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 213 LKQIPTHDYQKGD------EYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRK 266
Query: 511 VCPLCRRDVRQG 522
CP+C++ V +G
Sbjct: 267 TCPICKQPVHRG 278
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P ++KGD E D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 213 LKQIPTHDYQKGD------EYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK 266
Query: 511 VCPLCRRDVRQG 522
CP+C++ V +G
Sbjct: 267 TCPICKQPVHRG 278
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ P ++KGD+ D C ICL EYE+GD++R+LPC H YH CVD WL +
Sbjct: 213 LKQIPTHDYQKGDQY------DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK 266
Query: 511 VCPLCRRDVRQG 522
CP+C++ V +G
Sbjct: 267 TCPICKQPVHRG 278
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
C +C+ EY EG+++R LPC HEYH+ C+D+WL E + CP+CRR V
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICRRAV 747
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
C +C+ EY EG+++R LPC HEYH+ C+D+WL E + CP+CRR V
Sbjct: 568 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICRRAV 612
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 416 IVMLAEALFEVLDEIHR-QPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQC 474
+ L+ A F +L+E QP L+ + +D+ ++S + D + C
Sbjct: 502 LPFLSLAQFFLLNEDDEDQPRGLT---------KEQIDNLAMRSFGENDALKT------C 546
Query: 475 YICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
+C+ EY EG+++R LPC HEYH+ C+D+WL E + CP+CRR V
Sbjct: 547 SVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAV 590
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+D+ ++S + D + C +C+ EY EG+++R LPC HEYH+ C+D+WL E +
Sbjct: 553 IDNLAMRSFGENDALK------TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NS 605
Query: 511 VCPLCRRDV 519
CP+CRR V
Sbjct: 606 TCPICRRAV 614
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
C +C+ EY EG+++R LPC HEYH+ C+D+WL E + CP+CRR V
Sbjct: 585 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAV 629
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK 506
ES++ S + +K GD G V+ C +CL+E+EE + +RLLP C+H +H+ C+D WLK
Sbjct: 119 ESMIKSITVYKYKSGD---GFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175
Query: 507 EIHGVCPLCRRDV 519
H CPLCR V
Sbjct: 176 S-HSNCPLCRAFV 187
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK 506
+S+++S I ++K+GD G +E C +CL E+EE + +RLLP C+H +H+SC+D WL
Sbjct: 154 QSIINSITICNYKRGD---GLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLS 210
Query: 507 EIHGVCPLCRRDV 519
H CPLCR +
Sbjct: 211 S-HTNCPLCRAGI 222
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 446 APESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWL 505
A + + ++ KKGDK E + D C +C+ Y++ D +R+LPC H +H SCVD WL
Sbjct: 237 AAKKAISKLTTRTVKKGDK-ETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWL 295
Query: 506 KEIHGVCPLCRRDVRQG 522
E H CP+C+ ++ +
Sbjct: 296 SE-HCTCPMCKLNILKA 311
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 446 APESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWL 505
A + + ++ KKGDK E + D C +C+ Y++ D +R+LPC H +H SCVD WL
Sbjct: 237 AAKKAISKLTTRTVKKGDK-ETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWL 295
Query: 506 KEIHGVCPLCRRDVRQG 522
E H CP+C+ ++ +
Sbjct: 296 SE-HCTCPMCKLNILKA 311
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 446 APESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWL 505
A + + ++ KKGDK E + D C +C+ Y++ D +R+LPC H +H SCVD WL
Sbjct: 237 AAKKAISKLTTRTVKKGDK-ETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWL 295
Query: 506 KEIHGVCPLCRRDVRQG 522
E H CP+C+ ++ +
Sbjct: 296 SE-HCTCPMCKLNILKA 311
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK 506
ES++ S + ++K D G VE C +CL+E++E + +RLLP C+H +H+ C+D WLK
Sbjct: 136 ESLIKSITVYKYRKMD---GFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192
Query: 507 EIHGVCPLCR 516
H CPLCR
Sbjct: 193 S-HSNCPLCR 201
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 446 APESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWL 505
A + + I++ KKGDK E + D C +C+ Y+ D +R+LPC H +H SCVD WL
Sbjct: 251 AAKKAISKLQIRTIKKGDK-ETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 309
Query: 506 KEIHGVCPLCRRDVRQGATESSNSE 530
+ H CP+C+ ++ + N++
Sbjct: 310 LD-HRTCPMCKMNILKALGIPPNAD 333
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507
+ + P K+ K D E ++ D C IC+ Y+ D IR+LPC HE+H +C+D WL E
Sbjct: 279 KKAIMKIPTKTGKFSD--EKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIE 336
Query: 508 IHGVCPLCRRDV 519
H CP+C+ DV
Sbjct: 337 -HRTCPMCKLDV 347
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
+ S P K +K+GD G E C IC +YE+ + + LLPC H YH C++ WLK I+
Sbjct: 267 IASLPSKRYKEGDNQNGTNE--SCVICRLDYEDDEDLILLPCKHSYHSECINNWLK-INK 323
Query: 511 VCPLCRRDV 519
VCP+C +V
Sbjct: 324 VCPVCSAEV 332
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE 507
SV+++FP + G E +C +CL E+E+ + +RL+P C H +H C+D WL+
Sbjct: 93 SVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRS 152
Query: 508 IHGVCPLCRRDVRQGATESSNSEIPSV 534
CPLCR ++ ES +SEIP +
Sbjct: 153 -QTTCPLCRANLVPVPGESVSSEIPGL 178
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 448 ESVVDSFPIKSHKK--GDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKW 504
+S++D+ P+ +K G K + P C +CL E+E D++RLLP C H +H+ C+D W
Sbjct: 102 QSLIDTLPVFHYKSIVGLK----ISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTW 157
Query: 505 LKEIHGVCPLCRRDVRQGATESSN 528
L H CPLCR ++ G + N
Sbjct: 158 LLS-HSTCPLCRSNLLSGFSSHHN 180
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 454 FPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVC 512
F +K H+ G K G C ICL E+ E + +RLLP C+H +H+ C+D+WLK H C
Sbjct: 139 FKLKKHQNGFKING----TDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKS-HSNC 193
Query: 513 PLCRRDVRQGATE 525
PLCR + T+
Sbjct: 194 PLCRAKIIVPTTQ 206
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK 506
++++D+ P+ +K+ +G EP C +CL E+ E D++RLLP C H +H+ C+D WL
Sbjct: 121 QALIDALPVFLYKE---IKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLL 177
Query: 507 EIHGVCPLCR 516
+ CPLCR
Sbjct: 178 S-NSTCPLCR 186
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE 507
+VV+SFP+ ++ +++ G + +C ICL E E+ + +RLLP C+H +H+ C+D WL
Sbjct: 99 AVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYS 158
Query: 508 IHGVCPLCRRDV 519
H CP+CR ++
Sbjct: 159 -HATCPVCRSNL 169
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 446 APESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWL 505
A + + +++ +KGDK E + D C +C+ Y+ D +R+LPC H +H SCVD WL
Sbjct: 250 AAKKAISKLQVRTIRKGDK-ETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 308
Query: 506 KEIHGVCPLCRRDVRQGATESSNSE 530
+ H CP+C+ ++ + N++
Sbjct: 309 LD-HRTCPMCKMNILKALGIPPNAD 332
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 450 VVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEI 508
+V+ P + + + D C +CL +++ G+ +R LP CHH +H+ C+D WL
Sbjct: 172 LVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLR- 230
Query: 509 HGVCPLCRRDV 519
HG CP+CRRD+
Sbjct: 231 HGSCPMCRRDI 241
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 450 VVDSFP-IKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE 507
+VD P IK K + G D C +CL +++ G+ +R LP CHH +H+ C+D WL
Sbjct: 167 LVDKIPKIKITGKNNLDASG-NKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFR 225
Query: 508 IHGVCPLCRRDV 519
HG CP+CRRD+
Sbjct: 226 -HGSCPMCRRDL 236
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK 506
E++++ + +++GD G V C +CL E+ +G+ +RLLP C H +H C+D WLK
Sbjct: 134 ETLINKITVCKYRRGD---GFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLK 190
Query: 507 EIHGVCPLCRRDV 519
H CPLCR ++
Sbjct: 191 S-HSNCPLCRANI 202
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ-GATES 526
C +C+++Y G+++R LPC HE+H+ C+D+WL E + CP+CRR V + GAT S
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSE-NCTCPVCRRPVLEFGATSS 666
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE 507
S ++S + KKG EG ++ +C +CL E+EE + +RLLP C H +H++C+D WL
Sbjct: 113 SAINSITVVGFKKG---EGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLS 169
Query: 508 IHGVCPLCRRDV 519
H CPLCR V
Sbjct: 170 -HKNCPLCRAPV 180
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507
+ + +++ K+GDK E G + D C +C+ Y+ D +R+L C+H +H +CVD WL E
Sbjct: 255 KKAIGRLQLRTQKQGDK-EIGPDGDSCAVCIELYKPNDLVRILTCNHVFHKTCVDPWLLE 313
Query: 508 IHGVCPLCRRDVRQ 521
H CP+C+ D+ +
Sbjct: 314 -HRTCPMCKCDILK 326
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE 507
S++++FP + G E +C +CL E+E+ + +RL+P C H +H C+D WL+
Sbjct: 119 SIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRS 178
Query: 508 IHGVCPLCRRDVRQGATESSNS-EIPSV 534
H CPLCR D+ ES S +IP +
Sbjct: 179 -HTTCPLCRADLIPVPGESIVSIQIPGL 205
>sp|Q566M8|RN150_DANRE RING finger protein 150 OS=Danio rerio GN=rnf150 PE=2 SV=1
Length = 419
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 446 APESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWL 505
A + + +++ +KGD+ E + D C +C+ Y+ D +R+LPC H +H CVD WL
Sbjct: 240 AAKKAISQLQVRTIRKGDQ-ETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKCCVDPWL 298
Query: 506 KEIHGVCPLCRRDVRQGATESSNSE 530
+ H CP+C+ ++ + +S++E
Sbjct: 299 VD-HRTCPMCKMNILKALGLTSSAE 322
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507
+ + +++ K+GDK E G + D C +C+ Y+ D +R+L C+H +H +CVD WL E
Sbjct: 252 KKAIGKLQLRTLKQGDK-EIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE 310
Query: 508 IHGVCPLCRRDVRQG 522
H CP+C+ D+ +
Sbjct: 311 -HRTCPMCKCDILKA 324
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK 506
+S +D+ P+ +K + P C +CL E+E D++RLLP C H +HM C+D WL
Sbjct: 110 QSFIDTLPVFHYKSIIGLKN--YPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLL 167
Query: 507 EIHGVCPLCR 516
H CPLCR
Sbjct: 168 S-HSTCPLCR 176
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 456 IKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC 515
+++ K+GDK E G + D C +C+ Y+ D +R+L C+H +H +CVD WL E H CP+C
Sbjct: 260 LRTLKQGDK-EIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE-HRTCPMC 317
Query: 516 RRDVRQG 522
+ D+ +
Sbjct: 318 KCDILKA 324
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE 507
SVV++FP + + G +C ICL E+E+ + +RLLP C H +H C+D WL E
Sbjct: 103 SVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWL-E 161
Query: 508 IHGVCPLCRRDVRQGATESSNSE 530
H CP+CR ++ + E + E
Sbjct: 162 AHVTCPVCRANLAEQVAEGESVE 184
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Query: 451 VDSFP--IKSHKKGDK-AEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK 506
+++FP + S K + +GGVE C +CL E+E+ + +RL+P C H +H CVD WL
Sbjct: 112 IETFPTFLYSEVKAVRIGKGGVE---CAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLS 168
Query: 507 EIHGVCPLCRRDV 519
E H CPLCR D+
Sbjct: 169 E-HSTCPLCRADL 180
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 445 PAPESVVDSFP-IKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDK 503
PA +S +D+ P +K K K+E +QC +C+ E+E+G ++ +PC H +H C+
Sbjct: 190 PASKSAIDALPTVKVTKDMLKSEM----NQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLP 245
Query: 504 WLKEIHGVCPLCRRDV 519
WL E+H CP+CR ++
Sbjct: 246 WL-ELHNSCPVCRFEL 260
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523
E +C ICL EYE+G +R LPC+H +H +C+DKWL I+ CPLC+ ++ + A
Sbjct: 334 EDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWL-HINSRCPLCKFNILKNA 386
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507
+ + +++ K+GD+ E G + D C +C+ Y+ D +R+L C+H +H +CVD WL E
Sbjct: 252 KKAIGRLQLRTLKQGDR-EIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE 310
Query: 508 IHGVCPLCRRDVRQG 522
H CP+C+ D+ +
Sbjct: 311 -HRTCPMCKCDILKA 324
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
C +C+++Y G+++R LPC HE+H+ C+D+WL E + CP+CR+ V
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSE-NCTCPICRQPV 676
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIH 509
+ FP+ + G+ + +C ICL E+ +G+R+R+LP C+H +HMSC+D WL H
Sbjct: 85 LKKFPVAEYGSGEVK---IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVS-H 140
Query: 510 GVCPLCRRDV 519
CP CR +
Sbjct: 141 SSCPNCRHSL 150
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 450 VVDSFP--IKSHKKGDK-AEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWL 505
V++SFP + S KG K +GGVE C ICL E+E+ + +RL+P C H +H SC+D WL
Sbjct: 104 VINSFPSFLYSQVKGLKIGKGGVE---CAICLNEFEDEETLRLMPPCSHAFHASCIDVWL 160
Query: 506 KEIHGVCPLCRRDVRQGATESSNSEIPSV 534
CP+CR + NS P +
Sbjct: 161 SS-RSTCPVCRASLPPKPGSDQNSLYPFI 188
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 448 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507
+ V+ P+ + K G+K V+ + C +C+ ++ D IR+LPC H +H C+D WL +
Sbjct: 240 KKVIGQLPLHTVKHGEKGID-VDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLD 298
Query: 508 IHGVCPLCRRDV 519
H CP+C+ DV
Sbjct: 299 -HRTCPMCKLDV 309
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 460 KKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
KKG+K ++ + C +C+ Y+ D +R+LPC H +H C+D WL E H CP+C+ DV
Sbjct: 251 KKGEKGID-IDAENCAVCIENYKTKDLVRILPCKHIFHRLCIDPWLIE-HRTCPMCKLDV 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,704,833
Number of Sequences: 539616
Number of extensions: 8679310
Number of successful extensions: 22668
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 20721
Number of HSP's gapped (non-prelim): 1174
length of query: 534
length of database: 191,569,459
effective HSP length: 122
effective length of query: 412
effective length of database: 125,736,307
effective search space: 51803358484
effective search space used: 51803358484
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)