Query 043444
Match_columns 534
No_of_seqs 207 out of 1452
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 1.9E-16 4.2E-21 163.9 8.0 83 445-530 206-288 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 5.5E-14 1.2E-18 104.6 2.9 44 472-516 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 5.1E-12 1.1E-16 104.5 2.1 46 470-516 18-73 (73)
4 COG5540 RING-finger-containing 99.2 1.4E-11 3E-16 125.7 3.6 51 471-521 323-373 (374)
5 PHA02929 N1R/p28-like protein; 99.1 3.4E-11 7.5E-16 119.9 4.3 72 447-520 151-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 3.9E-10 8.5E-15 117.7 6.3 51 469-520 285-345 (491)
7 cd00162 RING RING-finger (Real 98.9 1.1E-09 2.5E-14 78.2 3.5 45 473-519 1-45 (45)
8 PLN03208 E3 ubiquitin-protein 98.8 2.7E-09 5.8E-14 103.6 4.3 50 469-521 16-80 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.4E-09 5.2E-14 81.8 3.2 46 471-520 2-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.7 8.6E-09 1.9E-13 75.2 3.0 39 474-515 1-39 (39)
11 PF12861 zf-Apc11: Anaphase-pr 98.7 9E-09 1.9E-13 88.5 3.5 51 470-520 20-82 (85)
12 KOG0317 Predicted E3 ubiquitin 98.7 9.4E-09 2E-13 104.6 3.2 50 469-522 237-286 (293)
13 PF15227 zf-C3HC4_4: zinc fing 98.7 1.9E-08 4.1E-13 75.4 3.3 39 474-515 1-42 (42)
14 KOG0320 Predicted E3 ubiquitin 98.6 2.3E-08 4.9E-13 96.1 3.4 52 469-522 129-180 (187)
15 KOG0802 E3 ubiquitin ligase [P 98.6 1.9E-08 4E-13 110.1 3.0 52 470-522 290-343 (543)
16 KOG0823 Predicted E3 ubiquitin 98.6 2.4E-08 5.2E-13 99.0 3.3 51 469-522 45-97 (230)
17 smart00184 RING Ring finger. E 98.6 3.5E-08 7.6E-13 68.0 3.2 39 474-515 1-39 (39)
18 smart00504 Ubox Modified RING 98.6 4.5E-08 9.8E-13 76.7 3.7 46 472-521 2-47 (63)
19 COG5194 APC11 Component of SCF 98.6 3.2E-08 6.9E-13 84.3 2.6 54 469-523 18-84 (88)
20 PHA02926 zinc finger-like prot 98.6 3.3E-08 7.2E-13 97.9 3.1 52 469-520 168-230 (242)
21 PF00097 zf-C3HC4: Zinc finger 98.5 3.5E-08 7.6E-13 71.9 2.3 40 474-515 1-41 (41)
22 PF14634 zf-RING_5: zinc-RING 98.5 5.3E-08 1.1E-12 73.0 2.7 44 473-517 1-44 (44)
23 TIGR00599 rad18 DNA repair pro 98.4 1.3E-07 2.7E-12 100.7 3.5 49 469-521 24-72 (397)
24 KOG2930 SCF ubiquitin ligase, 98.4 9.5E-08 2.1E-12 84.9 1.5 67 452-519 27-107 (114)
25 KOG1493 Anaphase-promoting com 98.2 1.5E-07 3.3E-12 79.7 -1.3 52 469-520 18-81 (84)
26 PF13445 zf-RING_UBOX: RING-ty 98.2 1.3E-06 2.7E-11 66.4 2.9 39 474-513 1-43 (43)
27 KOG2164 Predicted E3 ubiquitin 98.1 1.1E-06 2.3E-11 95.4 2.8 50 471-523 186-239 (513)
28 COG5574 PEX10 RING-finger-cont 98.1 9.9E-07 2.2E-11 89.2 2.4 51 469-522 213-264 (271)
29 PF04564 U-box: U-box domain; 98.1 1.6E-06 3.5E-11 71.6 3.1 49 471-522 4-52 (73)
30 KOG2177 Predicted E3 ubiquitin 98.1 9.3E-07 2E-11 82.6 1.3 45 469-517 11-55 (386)
31 KOG0828 Predicted E3 ubiquitin 98.1 1.4E-06 3.1E-11 94.2 2.1 53 469-521 569-635 (636)
32 smart00744 RINGv The RING-vari 98.1 2.9E-06 6.2E-11 65.8 3.0 43 473-516 1-49 (49)
33 KOG0287 Postreplication repair 98.0 2E-06 4.4E-11 89.7 1.4 49 470-522 22-70 (442)
34 TIGR00570 cdk7 CDK-activating 98.0 4.4E-06 9.6E-11 86.5 3.5 53 471-523 3-57 (309)
35 PF11793 FANCL_C: FANCL C-term 98.0 1.7E-06 3.6E-11 71.5 0.2 51 471-521 2-67 (70)
36 COG5219 Uncharacterized conser 97.9 2.7E-06 5.8E-11 97.2 0.6 51 470-520 1468-1523(1525)
37 KOG1734 Predicted RING-contain 97.8 6.9E-06 1.5E-10 83.6 1.8 53 468-520 221-281 (328)
38 COG5432 RAD18 RING-finger-cont 97.8 1.1E-05 2.4E-10 83.0 2.3 49 469-521 23-71 (391)
39 KOG4445 Uncharacterized conser 97.8 8.1E-06 1.8E-10 84.1 1.3 63 470-532 114-198 (368)
40 KOG0311 Predicted E3 ubiquitin 97.7 7E-06 1.5E-10 86.0 -0.8 57 470-528 42-98 (381)
41 KOG4265 Predicted E3 ubiquitin 97.6 4.2E-05 9.2E-10 80.2 3.7 55 469-527 288-343 (349)
42 KOG0827 Predicted E3 ubiquitin 97.6 2.5E-05 5.4E-10 82.9 1.9 49 472-520 5-56 (465)
43 KOG0825 PHD Zn-finger protein 97.6 1.7E-05 3.7E-10 89.6 0.1 56 471-527 123-178 (1134)
44 KOG0824 Predicted E3 ubiquitin 97.4 4.7E-05 1E-09 78.6 1.5 50 471-523 7-56 (324)
45 KOG0804 Cytoplasmic Zn-finger 97.4 8.5E-05 1.8E-09 80.0 2.2 48 470-520 174-222 (493)
46 KOG1645 RING-finger-containing 97.2 0.00024 5.3E-09 75.9 3.4 49 471-519 4-55 (463)
47 KOG1039 Predicted E3 ubiquitin 97.2 0.00016 3.5E-09 76.2 1.6 53 469-521 159-222 (344)
48 KOG0978 E3 ubiquitin ligase in 97.0 0.00018 4E-09 81.3 0.3 50 471-523 643-692 (698)
49 KOG4159 Predicted E3 ubiquitin 96.9 0.00046 9.9E-09 74.1 2.0 49 469-521 82-130 (398)
50 KOG4172 Predicted E3 ubiquitin 96.9 0.00026 5.7E-09 57.1 -0.0 48 471-521 7-55 (62)
51 KOG1428 Inhibitor of type V ad 96.5 0.0016 3.5E-08 77.8 3.0 70 449-520 3466-3544(3738)
52 KOG0297 TNF receptor-associate 96.2 0.0021 4.4E-08 68.7 1.7 52 469-523 19-70 (391)
53 KOG1785 Tyrosine kinase negati 96.2 0.0018 3.8E-08 69.5 1.1 48 472-522 370-418 (563)
54 PF12906 RINGv: RING-variant d 96.1 0.0037 8E-08 48.2 2.2 41 474-515 1-47 (47)
55 PF05883 Baculo_RING: Baculovi 96.0 0.0028 6E-08 59.1 1.2 35 471-505 26-66 (134)
56 PF11789 zf-Nse: Zinc-finger o 96.0 0.0038 8.3E-08 50.1 1.9 43 470-514 10-53 (57)
57 KOG0801 Predicted E3 ubiquitin 95.8 0.0031 6.8E-08 60.8 0.8 29 470-498 176-204 (205)
58 PF14835 zf-RING_6: zf-RING of 95.8 0.0024 5.1E-08 52.9 -0.2 46 471-521 7-52 (65)
59 KOG2879 Predicted E3 ubiquitin 95.7 0.0096 2.1E-07 61.4 3.9 53 469-523 237-290 (298)
60 KOG1941 Acetylcholine receptor 95.7 0.0039 8.4E-08 66.8 0.9 49 471-519 365-415 (518)
61 PF10367 Vps39_2: Vacuolar sor 95.6 0.0052 1.1E-07 52.4 1.1 32 470-502 77-108 (109)
62 PHA02862 5L protein; Provision 95.4 0.0092 2E-07 56.5 2.3 47 471-521 2-54 (156)
63 KOG4692 Predicted E3 ubiquitin 95.1 0.014 3E-07 62.1 2.9 49 468-520 419-467 (489)
64 KOG2660 Locus-specific chromos 95.1 0.0056 1.2E-07 64.2 -0.0 49 471-522 15-63 (331)
65 COG5152 Uncharacterized conser 95.0 0.008 1.7E-07 59.7 0.7 44 471-518 196-239 (259)
66 KOG1002 Nucleotide excision re 94.8 0.019 4E-07 63.7 3.0 55 469-526 534-592 (791)
67 PF14570 zf-RING_4: RING/Ubox 94.8 0.014 3.1E-07 45.8 1.5 46 474-519 1-47 (48)
68 KOG1814 Predicted E3 ubiquitin 94.8 0.015 3.2E-07 62.7 2.1 38 470-507 183-220 (445)
69 PHA02825 LAP/PHD finger-like p 94.8 0.022 4.8E-07 54.6 3.0 50 469-522 6-61 (162)
70 COG5175 MOT2 Transcriptional r 94.8 0.014 3E-07 61.8 1.7 58 470-527 13-71 (480)
71 KOG3970 Predicted E3 ubiquitin 94.7 0.022 4.8E-07 57.5 2.8 52 471-523 50-108 (299)
72 COG5222 Uncharacterized conser 94.7 0.015 3.2E-07 60.7 1.6 47 471-520 274-322 (427)
73 KOG1571 Predicted E3 ubiquitin 94.6 0.025 5.3E-07 60.1 3.0 45 469-520 303-347 (355)
74 KOG4185 Predicted E3 ubiquitin 94.3 0.024 5.2E-07 57.4 2.1 48 472-519 4-54 (296)
75 PHA03096 p28-like protein; Pro 94.2 0.023 5.1E-07 58.7 1.7 45 472-516 179-230 (284)
76 KOG1813 Predicted E3 ubiquitin 93.7 0.021 4.6E-07 59.4 0.4 45 471-519 241-285 (313)
77 KOG0827 Predicted E3 ubiquitin 93.3 0.0075 1.6E-07 64.6 -3.7 51 471-522 196-247 (465)
78 KOG1952 Transcription factor N 93.2 0.052 1.1E-06 62.9 2.4 46 471-516 191-243 (950)
79 KOG3039 Uncharacterized conser 93.1 0.075 1.6E-06 54.4 3.2 52 470-522 220-272 (303)
80 COG5236 Uncharacterized conser 92.7 0.1 2.2E-06 55.7 3.6 48 468-519 58-107 (493)
81 KOG4275 Predicted E3 ubiquitin 92.6 0.036 7.9E-07 57.8 0.2 43 471-521 300-343 (350)
82 KOG1940 Zn-finger protein [Gen 92.3 0.056 1.2E-06 55.9 1.1 46 471-517 158-204 (276)
83 PF04641 Rtf2: Rtf2 RING-finge 92.1 0.16 3.4E-06 51.5 4.0 53 469-523 111-164 (260)
84 PF10272 Tmpp129: Putative tra 91.8 0.27 5.8E-06 52.7 5.5 32 492-523 311-354 (358)
85 KOG4739 Uncharacterized protei 91.3 0.091 2E-06 53.2 1.4 44 473-520 5-48 (233)
86 PF08746 zf-RING-like: RING-li 91.3 0.079 1.7E-06 40.3 0.7 42 474-515 1-43 (43)
87 KOG1001 Helicase-like transcri 91.2 0.088 1.9E-06 60.3 1.2 46 472-521 455-501 (674)
88 KOG3268 Predicted E3 ubiquitin 91.0 0.14 2.9E-06 50.5 2.1 33 490-522 188-230 (234)
89 PF14446 Prok-RING_1: Prokaryo 90.8 0.25 5.4E-06 39.8 3.1 39 471-514 5-44 (54)
90 KOG0826 Predicted E3 ubiquitin 90.7 0.6 1.3E-05 49.6 6.7 44 469-516 298-342 (357)
91 KOG1609 Protein involved in mR 90.3 0.17 3.7E-06 50.8 2.2 52 471-522 78-136 (323)
92 PF07800 DUF1644: Protein of u 90.2 0.28 6E-06 47.3 3.3 34 471-507 2-48 (162)
93 KOG3161 Predicted E3 ubiquitin 89.7 0.11 2.3E-06 59.0 0.3 44 471-518 11-55 (861)
94 KOG2817 Predicted E3 ubiquitin 89.2 0.27 5.8E-06 53.1 2.8 49 471-519 334-384 (394)
95 KOG2114 Vacuolar assembly/sort 89.2 0.18 3.8E-06 58.8 1.5 44 471-520 840-883 (933)
96 PF14447 Prok-RING_4: Prokaryo 88.9 0.21 4.6E-06 40.4 1.3 45 472-522 8-52 (55)
97 KOG0298 DEAD box-containing he 87.4 0.22 4.7E-06 60.2 0.7 44 471-517 1153-1196(1394)
98 KOG2034 Vacuolar sorting prote 87.3 0.28 6.1E-06 57.4 1.6 37 469-506 815-851 (911)
99 COG5220 TFB3 Cdk activating ki 86.2 0.25 5.4E-06 50.6 0.3 50 471-520 10-64 (314)
100 KOG3800 Predicted E3 ubiquitin 86.0 0.55 1.2E-05 49.0 2.7 50 473-522 2-53 (300)
101 KOG4367 Predicted Zn-finger pr 85.7 0.39 8.4E-06 52.7 1.5 36 469-507 2-37 (699)
102 KOG0825 PHD Zn-finger protein 84.6 0.62 1.3E-05 54.2 2.5 50 470-519 95-153 (1134)
103 KOG3053 Uncharacterized conser 83.1 0.56 1.2E-05 48.4 1.3 54 468-521 17-83 (293)
104 KOG2932 E3 ubiquitin ligase in 81.4 0.5 1.1E-05 50.0 0.2 43 473-520 92-134 (389)
105 KOG1100 Predicted E3 ubiquitin 81.3 0.92 2E-05 45.1 2.0 40 474-521 161-201 (207)
106 KOG3899 Uncharacterized conser 79.1 1 2.2E-05 47.4 1.6 32 492-523 325-368 (381)
107 KOG1812 Predicted E3 ubiquitin 78.7 0.84 1.8E-05 49.1 0.9 37 471-507 146-183 (384)
108 KOG3002 Zn finger protein [Gen 77.8 1.4 3.1E-05 46.1 2.2 44 469-520 46-91 (299)
109 KOG3005 GIY-YIG type nuclease 76.6 1.3 2.8E-05 46.0 1.4 49 471-519 182-242 (276)
110 KOG4362 Transcriptional regula 76.3 0.69 1.5E-05 53.1 -0.6 49 471-522 21-71 (684)
111 PF03854 zf-P11: P-11 zinc fin 75.2 1.6 3.4E-05 34.8 1.2 44 473-522 4-48 (50)
112 COG5183 SSM4 Protein involved 72.6 2.7 6E-05 49.3 2.9 52 469-521 10-67 (1175)
113 KOG0309 Conserved WD40 repeat- 72.0 2.2 4.8E-05 49.8 1.9 27 487-514 1043-1069(1081)
114 KOG0802 E3 ubiquitin ligase [P 71.7 2.3 4.9E-05 47.6 2.0 49 469-525 477-525 (543)
115 KOG1829 Uncharacterized conser 71.5 1.3 2.9E-05 50.1 0.2 41 471-515 511-556 (580)
116 smart00249 PHD PHD zinc finger 71.4 1.2 2.5E-05 31.9 -0.2 30 474-503 2-31 (47)
117 PF05290 Baculo_IE-1: Baculovi 67.8 3.2 6.9E-05 39.3 1.7 50 471-522 80-134 (140)
118 KOG1815 Predicted E3 ubiquitin 65.9 3 6.4E-05 45.5 1.3 35 471-507 70-104 (444)
119 COG5109 Uncharacterized conser 65.7 4 8.6E-05 43.6 2.1 45 471-515 336-382 (396)
120 KOG0269 WD40 repeat-containing 63.9 5.7 0.00012 46.4 3.1 41 472-514 780-820 (839)
121 PF00628 PHD: PHD-finger; Int 60.9 1.8 4E-05 32.7 -1.0 44 474-517 2-50 (51)
122 KOG4718 Non-SMC (structural ma 57.0 5.4 0.00012 40.5 1.3 42 471-515 181-222 (235)
123 KOG2066 Vacuolar assembly/sort 55.9 5 0.00011 47.0 0.9 45 471-517 784-832 (846)
124 PF13901 DUF4206: Domain of un 52.9 8.6 0.00019 37.9 1.9 40 471-516 152-196 (202)
125 smart00132 LIM Zinc-binding do 51.5 13 0.00028 25.6 2.2 36 474-519 2-37 (39)
126 KOG2068 MOT2 transcription fac 51.1 11 0.00025 40.2 2.6 52 471-523 249-301 (327)
127 KOG1812 Predicted E3 ubiquitin 49.6 9 0.0002 41.4 1.6 47 471-518 306-355 (384)
128 PLN02189 cellulose synthase 48.4 14 0.00031 44.7 3.1 50 471-520 34-87 (1040)
129 KOG0956 PHD finger protein AF1 45.9 8.3 0.00018 44.8 0.7 62 471-532 117-194 (900)
130 PF14569 zf-UDP: Zinc-binding 45.6 20 0.00043 31.3 2.7 50 471-520 9-62 (80)
131 PLN02436 cellulose synthase A 44.6 17 0.00038 44.2 3.0 50 471-520 36-89 (1094)
132 KOG4185 Predicted E3 ubiquitin 43.9 4.4 9.5E-05 41.2 -1.7 48 471-518 207-265 (296)
133 PF10571 UPF0547: Uncharacteri 43.7 11 0.00023 26.2 0.7 22 473-496 2-24 (26)
134 KOG2807 RNA polymerase II tran 41.6 23 0.0005 38.2 3.1 46 472-518 331-376 (378)
135 KOG1729 FYVE finger containing 37.5 7.1 0.00015 40.9 -1.4 37 472-508 215-251 (288)
136 KOG3842 Adaptor protein Pellin 35.9 30 0.00065 37.3 2.8 53 469-521 339-415 (429)
137 KOG3579 Predicted E3 ubiquitin 35.7 33 0.00072 36.4 3.1 38 470-508 267-306 (352)
138 PF06844 DUF1244: Protein of u 34.8 22 0.00048 30.1 1.4 13 495-507 11-23 (68)
139 PF07191 zinc-ribbons_6: zinc- 34.6 4.4 9.4E-05 34.4 -2.8 40 472-520 2-41 (70)
140 PF04710 Pellino: Pellino; In 34.6 13 0.00028 40.8 0.0 31 485-518 302-337 (416)
141 PF02891 zf-MIZ: MIZ/SP-RING z 32.6 39 0.00084 26.5 2.3 43 472-517 3-49 (50)
142 PLN02638 cellulose synthase A 32.6 38 0.00082 41.5 3.3 50 471-520 17-70 (1079)
143 PF01363 FYVE: FYVE zinc finge 32.0 22 0.00048 28.5 1.0 37 470-506 8-45 (69)
144 KOG3039 Uncharacterized conser 32.0 28 0.0006 36.4 1.8 34 471-507 43-76 (303)
145 PF07975 C1_4: TFIIH C1-like d 31.0 38 0.00083 27.1 2.1 42 474-516 2-50 (51)
146 PF00412 LIM: LIM domain; Int 31.0 42 0.00091 25.5 2.3 39 474-522 1-39 (58)
147 PLN02915 cellulose synthase A 30.0 58 0.0013 39.9 4.2 51 470-520 14-68 (1044)
148 PF13719 zinc_ribbon_5: zinc-r 28.7 30 0.00066 25.4 1.1 26 472-497 3-36 (37)
149 PLN02195 cellulose synthase A 27.2 63 0.0014 39.3 3.9 50 471-520 6-59 (977)
150 PRK11088 rrmA 23S rRNA methylt 26.1 40 0.00087 33.8 1.8 26 472-497 3-28 (272)
151 PLN02400 cellulose synthase 25.9 46 0.00099 40.8 2.5 50 471-520 36-89 (1085)
152 PF06906 DUF1272: Protein of u 25.1 83 0.0018 26.0 3.0 47 472-521 6-53 (57)
153 KOG4323 Polycomb-like PHD Zn-f 24.8 22 0.00047 39.8 -0.4 47 471-517 168-223 (464)
154 KOG2169 Zn-finger transcriptio 24.2 40 0.00087 38.9 1.5 44 471-521 306-357 (636)
155 PF13832 zf-HC5HC2H_2: PHD-zin 23.7 58 0.0013 28.3 2.2 31 471-503 55-87 (110)
156 KOG1815 Predicted E3 ubiquitin 23.2 24 0.00052 38.6 -0.5 37 471-507 226-267 (444)
157 KOG3113 Uncharacterized conser 22.6 1.1E+02 0.0023 32.3 4.0 52 470-524 110-162 (293)
158 cd00065 FYVE FYVE domain; Zinc 21.9 55 0.0012 25.1 1.5 35 472-506 3-38 (57)
159 KOG1245 Chromatin remodeling c 21.5 29 0.00063 43.6 -0.2 50 470-519 1107-1159(1404)
160 smart00064 FYVE Protein presen 21.2 81 0.0018 25.2 2.4 36 471-506 10-46 (68)
161 KOG0824 Predicted E3 ubiquitin 20.7 38 0.00082 36.2 0.4 53 469-524 103-155 (324)
162 PF04710 Pellino: Pellino; In 20.4 34 0.00073 37.7 0.0 50 471-520 328-401 (416)
163 KOG2041 WD40 repeat protein [G 20.2 68 0.0015 38.2 2.3 44 471-519 1131-1184(1189)
164 PF10497 zf-4CXXC_R1: Zinc-fin 20.1 1.3E+02 0.0029 27.0 3.7 27 493-519 37-71 (105)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.9e-16 Score=163.93 Aligned_cols=83 Identities=37% Similarity=0.986 Sum_probs=70.2
Q ss_pred CCChHHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444 445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT 524 (534)
Q Consensus 445 PApksvIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds 524 (534)
..++..++++|...++..+..... ..|+||||+|++|+++++|||+|.||..||++||.+.+..||+||.++.+...
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~---~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDAT---DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCC---ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 468899999999999877654321 68999999999999999999999999999999999744669999999988766
Q ss_pred CCCCCC
Q 043444 525 ESSNSE 530 (534)
Q Consensus 525 e~sssE 530 (534)
.+...|
T Consensus 283 ~~~~~e 288 (348)
T KOG4628|consen 283 SEPVSE 288 (348)
T ss_pred CCCccC
Confidence 555444
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.43 E-value=5.5e-14 Score=104.60 Aligned_cols=44 Identities=50% Similarity=1.312 Sum_probs=40.2
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR 516 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR 516 (534)
++|+||++.|..++.++.|+|+|.||..||..|+++ +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 369999999999999999999999999999999997 88999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.20 E-value=5.1e-12 Score=104.52 Aligned_cols=46 Identities=41% Similarity=1.008 Sum_probs=36.1
Q ss_pred CCcccccccccccc----------CCeeEEecCCCccchhHHHHHHhccCCCCcccc
Q 043444 470 EPDQCYICLAEYEE----------GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR 516 (534)
Q Consensus 470 e~~eC~ICLEeFee----------gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR 516 (534)
.++.|+||++.|.. +-.+...+|||.||..||.+||+. +.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 35569999999932 124455679999999999999996 78999998
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-11 Score=125.74 Aligned_cols=51 Identities=41% Similarity=1.090 Sum_probs=47.3
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..+|+|||+.|..++++++|||.|.||..||++|+...+..||+||.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 478999999999999999999999999999999999657899999999875
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.13 E-value=3.4e-11 Score=119.95 Aligned_cols=72 Identities=22% Similarity=0.537 Sum_probs=52.9
Q ss_pred ChHHHhcCCceeccCCCCcCCCCCCccccccccccccCCe-----eEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 447 PESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDR-----IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 447 pksvIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~-----vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
.+..++.+|.......... ....+.+|+||++.+...+. .++++|+|.||..||.+|++. +.+||+||..+.
T Consensus 151 ~~~~i~~lp~vl~~~e~~~-~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLY-NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred hHHHHHhcchhhhhhhhhh-cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 5667778887654433222 12346789999999875431 234569999999999999996 899999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.9e-10 Score=117.73 Aligned_cols=51 Identities=35% Similarity=0.910 Sum_probs=43.3
Q ss_pred CCCccccccccc-cccC---------CeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 469 VEPDQCYICLAE-YEEG---------DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEe-Feeg---------d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
..+..|.|||++ |..+ .+++.|||||.||.+|+..|+.+ ..+||+||.+|.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 456789999999 5544 24578999999999999999996 899999999863
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.1e-09 Score=78.18 Aligned_cols=45 Identities=49% Similarity=1.157 Sum_probs=37.2
Q ss_pred cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV 519 (534)
+|+||++.+ .+.+..++|+|.||..|+..|++.....||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 234556669999999999999996467899999764
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.82 E-value=2.7e-09 Score=103.62 Aligned_cols=50 Identities=28% Similarity=0.674 Sum_probs=40.9
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc---------------cCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE---------------IHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk---------------~~~TCPLCR~eV~~ 521 (534)
..+.+|+||++.+.+ .++++|||.||..||.+|+.. ....||+||.+|..
T Consensus 16 ~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 346789999998864 567899999999999999852 13579999998855
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.82 E-value=2.4e-09 Score=81.82 Aligned_cols=46 Identities=33% Similarity=0.917 Sum_probs=39.2
Q ss_pred CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
+..|.||++.+.. +..+||||. |+..|+..|++. ...||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 4679999998664 788999999 999999999995 899999999875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.71 E-value=8.6e-09 Score=75.21 Aligned_cols=39 Identities=36% Similarity=1.048 Sum_probs=33.5
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC 515 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLC 515 (534)
|+||++.+.. .++.++|||.||..||.+|++. +..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 8999999875 5578999999999999999997 8899998
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.71 E-value=9e-09 Score=88.47 Aligned_cols=51 Identities=37% Similarity=0.941 Sum_probs=39.8
Q ss_pred CCccccccccccc--------cCC--eeEEecCCCccchhHHHHHHhcc--CCCCcccccccc
Q 043444 470 EPDQCYICLAEYE--------EGD--RIRLLPCHHEYHMSCVDKWLKEI--HGVCPLCRRDVR 520 (534)
Q Consensus 470 e~~eC~ICLEeFe--------egd--~vrvLPCgH~FHk~CId~WLkk~--~~TCPLCR~eV~ 520 (534)
.++.|.||+..|+ +|+ .++.-.|+|.||.+||.+||... +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3678999999987 333 23333599999999999999962 468999999764
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.4e-09 Score=104.57 Aligned_cols=50 Identities=30% Similarity=0.784 Sum_probs=43.0
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
....+|.|||+.... +..+||||+||..||..|..+ +..||+||.++.+.
T Consensus 237 ~a~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCC---CCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCc
Confidence 445789999998654 678999999999999999997 78899999988654
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.65 E-value=1.9e-08 Score=75.43 Aligned_cols=39 Identities=38% Similarity=0.873 Sum_probs=30.6
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhccC---CCCccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH---GVCPLC 515 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~---~TCPLC 515 (534)
|+||++.|.. ++.|+|||.|++.||..|+++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999986 78999999999999999998733 359988
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.3e-08 Score=96.09 Aligned_cols=52 Identities=27% Similarity=0.585 Sum_probs=42.7
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.....|+|||+.|.+... .-..|||+||+.||..-++. ...||+|+++|..+
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHh-CCCCCCcccccchh
Confidence 334789999999986432 34679999999999999996 88999999877544
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.9e-08 Score=110.15 Aligned_cols=52 Identities=35% Similarity=0.862 Sum_probs=45.1
Q ss_pred CCccccccccccccCCe--eEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDR--IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~--vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+..|+||++++..+.+ +.+|||+|.||..|+..||++ ..+||+||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhcc
Confidence 36789999999987655 789999999999999999996 89999999955443
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.4e-08 Score=99.02 Aligned_cols=51 Identities=25% Similarity=0.595 Sum_probs=41.0
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLCR~eV~~~ 522 (534)
....+|.|||+.-++ +++..|||+||..||.+||.. ....||+||..|...
T Consensus 45 ~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 446789999998553 567779999999999999986 234589999988654
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.60 E-value=3.5e-08 Score=68.05 Aligned_cols=39 Identities=46% Similarity=1.113 Sum_probs=33.4
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC 515 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLC 515 (534)
|+||++.. ..+..++|+|.||..|+..|++.....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999883 3578899999999999999998446779988
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.58 E-value=4.5e-08 Score=76.68 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=40.7
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..|+||++.+.. +++++|||.|++.||.+|+++ +.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD---PVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 469999999875 567899999999999999997 8899999988754
No 19
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.56 E-value=3.2e-08 Score=84.34 Aligned_cols=54 Identities=33% Similarity=0.738 Sum_probs=40.1
Q ss_pred CCCccccccccccc-----------cCCe-eEEe-cCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYE-----------EGDR-IRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFe-----------egd~-vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
...+.|.||...|. ++++ ++.. -|.|.||.+||.+||.. +..||+||++....+
T Consensus 18 i~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~~ 84 (88)
T COG5194 18 IPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLAD 84 (88)
T ss_pred cccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEec
Confidence 33567888876653 3343 2333 39999999999999997 899999999876543
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.56 E-value=3.3e-08 Score=97.94 Aligned_cols=52 Identities=29% Similarity=0.774 Sum_probs=38.5
Q ss_pred CCCccccccccccccC----C-eeEEe-cCCCccchhHHHHHHhcc-----CCCCcccccccc
Q 043444 469 VEPDQCYICLAEYEEG----D-RIRLL-PCHHEYHMSCVDKWLKEI-----HGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFeeg----d-~vrvL-PCgH~FHk~CId~WLkk~-----~~TCPLCR~eV~ 520 (534)
..+.+|+|||+..-+. + ...+| +|+|.||..||..|.+.. ...||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568899999886332 1 12344 699999999999999852 245999999764
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.55 E-value=3.5e-08 Score=71.91 Aligned_cols=40 Identities=45% Similarity=1.114 Sum_probs=34.4
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHh-ccCCCCccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLK-EIHGVCPLC 515 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLk-k~~~TCPLC 515 (534)
|+||++.+.. ....++|||.||..||.+|++ .....||+|
T Consensus 1 C~iC~~~~~~--~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED--PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS--EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC--CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999875 335889999999999999999 346779998
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.53 E-value=5.3e-08 Score=73.01 Aligned_cols=44 Identities=36% Similarity=0.850 Sum_probs=38.6
Q ss_pred cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~ 517 (534)
+|.||++.|.+.....+++|||.|+..||..+.. ....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence 4999999996666788999999999999999994 3678999985
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=1.3e-07 Score=100.69 Aligned_cols=49 Identities=27% Similarity=0.653 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
.....|+||++.|.. +++++|||.||..||..||.. ...||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 446789999999864 457899999999999999996 6789999998754
No 24
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.5e-08 Score=84.88 Aligned_cols=67 Identities=25% Similarity=0.576 Sum_probs=47.6
Q ss_pred hcCCceeccCCCCcCCCCCCccccccccccc-------------cCCeeEEec-CCCccchhHHHHHHhccCCCCccccc
Q 043444 452 DSFPIKSHKKGDKAEGGVEPDQCYICLAEYE-------------EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRR 517 (534)
Q Consensus 452 dsLPv~~~k~~~~~~~~~e~~eC~ICLEeFe-------------egd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~ 517 (534)
+.+.+++.............+.|+||...+. .++-.+... |.|.||.+||.+||++ +..||+|.+
T Consensus 27 krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~ 105 (114)
T KOG2930|consen 27 KRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-RNVCPLDNK 105 (114)
T ss_pred cceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-cCcCCCcCc
Confidence 3444555555555556677889999986642 122233443 9999999999999997 899999976
Q ss_pred cc
Q 043444 518 DV 519 (534)
Q Consensus 518 eV 519 (534)
+-
T Consensus 106 eW 107 (114)
T KOG2930|consen 106 EW 107 (114)
T ss_pred ce
Confidence 53
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-07 Score=79.70 Aligned_cols=52 Identities=33% Similarity=0.869 Sum_probs=39.0
Q ss_pred CCCccccccccccc--------cCCe-eEEec-CCCccchhHHHHHHhc--cCCCCcccccccc
Q 043444 469 VEPDQCYICLAEYE--------EGDR-IRLLP-CHHEYHMSCVDKWLKE--IHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFe--------egd~-vrvLP-CgH~FHk~CId~WLkk--~~~TCPLCR~eV~ 520 (534)
..++.|-||...|. +||. +.++. |.|.||.+||.+|+.. ....||+||++..
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34558999999986 3332 33443 9999999999999986 2356999998754
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.17 E-value=1.3e-06 Score=66.42 Aligned_cols=39 Identities=31% Similarity=0.715 Sum_probs=23.2
Q ss_pred ccccccccccC-CeeEEecCCCccchhHHHHHHhcc---CCCCc
Q 043444 474 CYICLAEYEEG-DRIRLLPCHHEYHMSCVDKWLKEI---HGVCP 513 (534)
Q Consensus 474 C~ICLEeFeeg-d~vrvLPCgH~FHk~CId~WLkk~---~~TCP 513 (534)
|+||++ |... ..+++|+|||.|++.||.+|+++. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 7543 456889999999999999999952 34576
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.1e-06 Score=95.43 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=39.5
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc----cCCCCcccccccccCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----IHGVCPLCRRDVRQGA 523 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----~~~TCPLCR~eV~~~d 523 (534)
+..|||||+.... +..+.|||+||..||.++|.. ....||+||..|..++
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 5689999998654 445559999999999998764 2456999999887644
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.9e-07 Score=89.20 Aligned_cols=51 Identities=35% Similarity=0.784 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHH-HHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDK-WLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~-WLkk~~~TCPLCR~eV~~~ 522 (534)
..+.+|+||++.... +..+||||+||..||.. |=++....||+||+.+...
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 447889999998664 67889999999999999 9887444599999988554
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.14 E-value=1.6e-06 Score=71.56 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=38.9
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|+||.+.|.+ ++++||||.|.+.||..||++.+.+||+|+..+...
T Consensus 4 ~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 5679999999986 778999999999999999997678999999887654
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.3e-07 Score=82.63 Aligned_cols=45 Identities=36% Similarity=0.759 Sum_probs=39.5
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~ 517 (534)
.+...|+||++.|... .+|||+|.||..||..|+. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 4567899999999874 8999999999999999998 4678999993
No 31
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.4e-06 Score=94.16 Aligned_cols=53 Identities=30% Similarity=0.840 Sum_probs=40.6
Q ss_pred CCCccccccccccccC----C----------eeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEG----D----------RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeeg----d----------~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
....+|+|||..+.-- + .-...||.|+||..|+.+|+...+-.||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4456899999886521 1 112459999999999999999646689999998864
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.06 E-value=2.9e-06 Score=65.79 Aligned_cols=43 Identities=26% Similarity=0.772 Sum_probs=33.7
Q ss_pred cccccccccccCCeeEEecCC-----CccchhHHHHHHhc-cCCCCcccc
Q 043444 473 QCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCR 516 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCg-----H~FHk~CId~WLkk-~~~TCPLCR 516 (534)
.|.||++ +..++...++||. |.||..|+.+|+.. .+.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3999999 4444555688985 89999999999976 245799995
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.99 E-value=2e-06 Score=89.65 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=43.1
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
+-..|-||.+.|.. +.+.||+|.||.-||..+|.. +..||.|+.++...
T Consensus 22 ~lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhcC---ceeccccchHHHHHHHHHhcc-CCCCCceecccchh
Confidence 35679999999986 678899999999999999996 89999999987654
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.97 E-value=4.4e-06 Score=86.48 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=39.4
Q ss_pred Cccccccccc--cccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 471 PDQCYICLAE--YEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 471 ~~eC~ICLEe--Feegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
+..||||+.. +.+.-++.+-+|||.||..||..+|......||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4579999986 2232222233799999999999977655678999999887654
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.97 E-value=1.7e-06 Score=71.51 Aligned_cols=51 Identities=24% Similarity=0.729 Sum_probs=24.1
Q ss_pred Cccccccccccc-cCCeeE-Ee---cCCCccchhHHHHHHhcc----------CCCCccccccccc
Q 043444 471 PDQCYICLAEYE-EGDRIR-LL---PCHHEYHMSCVDKWLKEI----------HGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFe-egd~vr-vL---PCgH~FHk~CId~WLkk~----------~~TCPLCR~eV~~ 521 (534)
+.+|.||+..+. .++.+. +. .|++.||..||..||... ...||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 457999999876 333322 22 399999999999999851 1249999998853
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.91 E-value=2.7e-06 Score=97.23 Aligned_cols=51 Identities=27% Similarity=0.800 Sum_probs=38.0
Q ss_pred CCccccccccccccCC---eeEEec-CCCccchhHHHHHHhc-cCCCCcccccccc
Q 043444 470 EPDQCYICLAEYEEGD---RIRLLP-CHHEYHMSCVDKWLKE-IHGVCPLCRRDVR 520 (534)
Q Consensus 470 e~~eC~ICLEeFeegd---~vrvLP-CgH~FHk~CId~WLkk-~~~TCPLCR~eV~ 520 (534)
...+|+||+..+..-+ .-...| |.|.||..|+.+|++. .+.+||+||.+++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3568999998875211 112223 9999999999999997 4578999997764
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.9e-06 Score=83.63 Aligned_cols=53 Identities=23% Similarity=0.614 Sum_probs=42.4
Q ss_pred CCCCccccccccccccCC-------eeEEecCCCccchhHHHHHHhc-cCCCCcccccccc
Q 043444 468 GVEPDQCYICLAEYEEGD-------RIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDVR 520 (534)
Q Consensus 468 ~~e~~eC~ICLEeFeegd-------~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV~ 520 (534)
..++..|+||-..+.... +.-.|.|+|.||..||.-|--- .+.+||.|+..|.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 345678999998876544 6678999999999999999743 2578999988774
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.77 E-value=1.1e-05 Score=82.97 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...+.|-||-+.|.. ....+|||.||.-||...|.. +..||+||.+.+.
T Consensus 23 Ds~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeec---ceecccccchhHHHHHHHhcC-CCCCccccccHHh
Confidence 446789999999875 567789999999999999996 8999999997653
No 39
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.77 E-value=8.1e-06 Score=84.14 Aligned_cols=63 Identities=29% Similarity=0.753 Sum_probs=49.5
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhc----------------------cCCCCcccccccccCCCCCC
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----------------------IHGVCPLCRRDVRQGATESS 527 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----------------------~~~TCPLCR~eV~~~dse~s 527 (534)
...+|.|||.-|..++...+.+|-|+||..|+.++|.. ....||+||..|-.......
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~slk 193 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSLK 193 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccccee
Confidence 35689999999999999999999999999999988852 12359999998876654444
Q ss_pred CCCCC
Q 043444 528 NSEIP 532 (534)
Q Consensus 528 ssE~P 532 (534)
--+.|
T Consensus 194 ~a~~P 198 (368)
T KOG4445|consen 194 IAEFP 198 (368)
T ss_pred ccCCC
Confidence 44433
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=7e-06 Score=86.01 Aligned_cols=57 Identities=23% Similarity=0.507 Sum_probs=45.3
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCCC
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSN 528 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~ss 528 (534)
.+..|+|||.-+.. .+...-|.|.||..||.+-|+..++.||.||+.+...-....+
T Consensus 42 ~~v~c~icl~llk~--tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 42 IQVICPICLSLLKK--TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hhhccHHHHHHHHh--hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 35789999998864 2333449999999999999998889999999998776554443
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=4.2e-05 Score=80.24 Aligned_cols=55 Identities=25% Similarity=0.594 Sum_probs=43.7
Q ss_pred CCCccccccccccccCCeeEEecCCC-ccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHH-EYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS 527 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH-~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s 527 (534)
+...+|.|||.+-.+ +.+|||.| ..|..|.+...-+ ++.||+||+.+..-.....
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhheecc
Confidence 346799999998665 78999999 5899999886653 7899999999876544433
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=2.5e-05 Score=82.85 Aligned_cols=49 Identities=22% Similarity=0.791 Sum_probs=35.7
Q ss_pred ccccccccccccCCeeEEec-CCCccchhHHHHHHhc--cCCCCcccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE--IHGVCPLCRRDVR 520 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk--~~~TCPLCR~eV~ 520 (534)
..|.||.+-+.....+.-.. |||.||..|+..|+.. .++.||+||-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 57999955444433444444 9999999999999986 2358999994443
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.56 E-value=1.7e-05 Score=89.61 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=46.6
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS 527 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s 527 (534)
...|+||+..|.++......+|+|+||.+||..|-+ ...+||+||.++..-.....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~V~eS 178 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVKVLES 178 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheeeeecc
Confidence 357999999998876666778999999999999999 48999999998876554433
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=4.7e-05 Score=78.57 Aligned_cols=50 Identities=22% Similarity=0.495 Sum_probs=40.5
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
..+|+||+.... .++.|+|+|.||..||.--.+....+|++||.+|....
T Consensus 7 ~~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 568999998754 35789999999999999854443578999999997654
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.36 E-value=8.5e-05 Score=80.02 Aligned_cols=48 Identities=33% Similarity=0.831 Sum_probs=38.0
Q ss_pred CCccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 470 EPDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 470 e~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
+--.|||||+-+.+.- -++...|.|.||..|+.+|.- .+||+||.-..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 3457999999987643 234456999999999999965 69999998655
No 46
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00024 Score=75.91 Aligned_cols=49 Identities=37% Similarity=0.874 Sum_probs=38.2
Q ss_pred CccccccccccccC-C-eeEEecCCCccchhHHHHHHhc-cCCCCccccccc
Q 043444 471 PDQCYICLAEYEEG-D-RIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeeg-d-~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV 519 (534)
...|+||++.|... + .+..|.|||.|...||.+||.+ ....||.|..+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 46799999998743 3 3455669999999999999965 245699997653
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00016 Score=76.17 Aligned_cols=53 Identities=30% Similarity=0.839 Sum_probs=38.7
Q ss_pred CCCccccccccccccCC----eeEEec-CCCccchhHHHHHHhcc------CCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGD----RIRLLP-CHHEYHMSCVDKWLKEI------HGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd----~vrvLP-CgH~FHk~CId~WLkk~------~~TCPLCR~eV~~ 521 (534)
..+.+|.|||+...+.. ...+|| |.|.||..||.+|-... ...||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34678999999876432 122345 99999999999999432 4679999986543
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00018 Score=81.34 Aligned_cols=50 Identities=18% Similarity=0.521 Sum_probs=41.0
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
...|+.|-.-+.+ +++..|+|.||..||.+.+....+.||.|...+...|
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 4679999977765 4556699999999999999987889999988775443
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00046 Score=74.06 Aligned_cols=49 Identities=27% Similarity=0.717 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..+.+|.||+..+.. ++.+||||.||..||++-+.+ ...||+||..+..
T Consensus 82 ~sef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---CccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence 457899999988765 678899999999999997774 7889999999875
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00026 Score=57.10 Aligned_cols=48 Identities=31% Similarity=0.764 Sum_probs=36.1
Q ss_pred CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
.++|.||++.-.+ .++.-|||. .|..|-.+.++..+..||+||.++..
T Consensus 7 ~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 4789999987432 234459994 78889888777568999999998753
No 51
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.50 E-value=0.0016 Score=77.77 Aligned_cols=70 Identities=23% Similarity=0.535 Sum_probs=49.9
Q ss_pred HHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc---------CCCCccccccc
Q 043444 449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---------HGVCPLCRRDV 519 (534)
Q Consensus 449 svIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---------~~TCPLCR~eV 519 (534)
..-.-||-..+++...++ ..++.|.||+.+--.....+.|.|+|.||..|..+-|... -..||+|+.++
T Consensus 3466 NEE~CLPCl~Cdks~tkQ--D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3466 NEEHCLPCLHCDKSATKQ--DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred chhhcccccccChhhhhc--ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 333456666655554432 3467899999886666678899999999999998766541 12599999876
Q ss_pred c
Q 043444 520 R 520 (534)
Q Consensus 520 ~ 520 (534)
.
T Consensus 3544 n 3544 (3738)
T KOG1428|consen 3544 N 3544 (3738)
T ss_pred h
Confidence 3
No 52
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.21 E-value=0.0021 Score=68.71 Aligned_cols=52 Identities=27% Similarity=0.675 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
.+...|+||+..+.+. +....|||.||..||..|+.. +..||.|+..+....
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCC--CCCCCCCCcccccccchhhcc-CcCCcccccccchhh
Confidence 3467899999998862 222579999999999999996 899999988776543
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.19 E-value=0.0018 Score=69.49 Aligned_cols=48 Identities=27% Similarity=0.785 Sum_probs=38.3
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcccccccccC
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDVRQG 522 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV~~~ 522 (534)
..|.||-+.=+ .+++=||||..|..|+..|-.. ...+||.||.++-..
T Consensus 370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 45999997633 3677799999999999999854 357899999987543
No 54
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.10 E-value=0.0037 Score=48.17 Aligned_cols=41 Identities=37% Similarity=0.925 Sum_probs=28.5
Q ss_pred ccccccccccCCeeEEecCC--C---ccchhHHHHHHhc-cCCCCccc
Q 043444 474 CYICLAEYEEGDRIRLLPCH--H---EYHMSCVDKWLKE-IHGVCPLC 515 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCg--H---~FHk~CId~WLkk-~~~TCPLC 515 (534)
|-||++.-.+.+ ..+.||. - ..|..|+.+|+.. ...+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999877655 4567865 3 7899999999985 34679987
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.99 E-value=0.0028 Score=59.14 Aligned_cols=35 Identities=17% Similarity=0.550 Sum_probs=30.0
Q ss_pred CccccccccccccCCeeEEecCC------CccchhHHHHHH
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCH------HEYHMSCVDKWL 505 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCg------H~FHk~CId~WL 505 (534)
..+|.||++.+...+-++.++|+ |.||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 46899999999885667778887 899999999994
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.99 E-value=0.0038 Score=50.07 Aligned_cols=43 Identities=19% Similarity=0.506 Sum_probs=28.8
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPL 514 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPL 514 (534)
....|||.+..|++ .++...|+|.|-+..|..||++ ....||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35689999999874 5666789999999999999943 3456998
No 57
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0031 Score=60.76 Aligned_cols=29 Identities=45% Similarity=0.942 Sum_probs=27.1
Q ss_pred CCccccccccccccCCeeEEecCCCccch
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHM 498 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk 498 (534)
+..+|.||||+++.++.+..|||-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 45689999999999999999999999997
No 58
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.76 E-value=0.0024 Score=52.94 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=23.1
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
-..|++|.+.+.+ .+....|.|.||..||..-+. ..||+|+.+.-.
T Consensus 7 lLrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILKE--PVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT---TB-SSS--B-S-
T ss_pred hcCCcHHHHHhcC--CceeccCccHHHHHHhHHhcC---CCCCCcCChHHH
Confidence 3569999999875 334456999999999988655 359999876543
No 59
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0096 Score=61.36 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=40.2
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV~~~d 523 (534)
..+.+|++|-+.-. -.....+|+|.||..||..=+.- ...+||.|-.++....
T Consensus 237 t~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cCCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 45779999998733 34566779999999999985542 2478999988887443
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.67 E-value=0.0039 Score=66.83 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=39.7
Q ss_pred CccccccccccccCC-eeEEecCCCccchhHHHHHHhc-cCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV 519 (534)
+.-|-.|-+-|...+ ..--|||.|+||..|+...|.+ ...+||-||+-.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 567999999887554 4567999999999999999976 346799999533
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.56 E-value=0.0052 Score=52.39 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=27.3
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHH
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVD 502 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId 502 (534)
+...|+||-..+.. ....+.||||.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 35679999999876 567789999999999975
No 62
>PHA02862 5L protein; Provisional
Probab=95.41 E-value=0.0092 Score=56.54 Aligned_cols=47 Identities=28% Similarity=0.674 Sum_probs=35.6
Q ss_pred CccccccccccccCCeeEEecCC-----CccchhHHHHHHhc-cCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCg-----H~FHk~CId~WLkk-~~~TCPLCR~eV~~ 521 (534)
...|-||+++-++ . .-||. ..-|..|+.+|++. ++..||+|+.++.-
T Consensus 2 ~diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3579999998543 2 35665 57899999999986 45679999998753
No 63
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.014 Score=62.08 Aligned_cols=49 Identities=27% Similarity=0.558 Sum_probs=40.3
Q ss_pred CCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 468 GVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 468 ~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
..++..|+||+..-. ..+..||+|.=|..||.+-|.. .+.|=.|+..+.
T Consensus 419 ~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccc---hhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 356788999996522 2457799999999999999995 889999999876
No 64
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.12 E-value=0.0056 Score=64.18 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=40.0
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
-..|.+|-..|-+ ...+.-|-|.||+.||.+.|.. ...||.|...|...
T Consensus 15 ~itC~LC~GYliD--ATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLID--ATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeec--chhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCc
Confidence 4679999998875 2334459999999999999997 89999998877554
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.01 E-value=0.008 Score=59.67 Aligned_cols=44 Identities=25% Similarity=0.602 Sum_probs=37.7
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~e 518 (534)
...|-||.++|+. +++..|||.||..|..+-+++ ...|-+|-++
T Consensus 196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQK-GDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccc---hhhhhcchhHHHHHHHHHhcc-CCcceecchh
Confidence 4579999999986 667789999999999998886 7889999654
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.84 E-value=0.019 Score=63.72 Aligned_cols=55 Identities=20% Similarity=0.544 Sum_probs=41.4
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc----cCCCCcccccccccCCCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----IHGVCPLCRRDVRQGATES 526 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----~~~TCPLCR~eV~~~dse~ 526 (534)
....+|-+|-+.-++ .+...|.|.||+.||..++.. .+-+||.|-..+.-..++.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 345789999987543 567789999999999888764 3567999977776554443
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.84 E-value=0.014 Score=45.80 Aligned_cols=46 Identities=28% Similarity=0.585 Sum_probs=23.5
Q ss_pred ccccccccccCCe-eEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444 474 CYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519 (534)
Q Consensus 474 C~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV 519 (534)
|++|.+++...+. ..--+|++.++..|...-++.....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 8999999954443 223348999999998888864478899999864
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.015 Score=62.75 Aligned_cols=38 Identities=26% Similarity=0.651 Sum_probs=33.1
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk 507 (534)
.-.+|.||+++..-..-+..|||+|+||+.|+..++..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 35689999999876578889999999999999999874
No 69
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.80 E-value=0.022 Score=54.61 Aligned_cols=50 Identities=22% Similarity=0.637 Sum_probs=36.4
Q ss_pred CCCccccccccccccCCeeEEecCC--C---ccchhHHHHHHhc-cCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCH--H---EYHMSCVDKWLKE-IHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCg--H---~FHk~CId~WLkk-~~~TCPLCR~eV~~~ 522 (534)
..+..|-||.++..+ . .-||. . .-|..|+.+|+.. +...|++|+++..-.
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 346789999988432 2 34755 3 5699999999986 346799999877543
No 70
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.78 E-value=0.014 Score=61.83 Aligned_cols=58 Identities=24% Similarity=0.565 Sum_probs=44.5
Q ss_pred CCccccccccccccCCe-eEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444 470 EPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS 527 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s 527 (534)
+++-|++|++++...++ ..-.|||-..|..|....-+..+..||-||......+..+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 35569999999987764 34567999889989777665567889999998877665544
No 71
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.022 Score=57.54 Aligned_cols=52 Identities=23% Similarity=0.605 Sum_probs=42.5
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhcc-------CCCCcccccccccCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI-------HGVCPLCRRDVRQGA 523 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~-------~~TCPLCR~eV~~~d 523 (534)
.-.|..|-..+..|+.+ .|-|-|.||..|+..|-..- ...||.|-.+|-...
T Consensus 50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 45799999999998875 66799999999999998751 235999999886553
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.66 E-value=0.015 Score=60.74 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=36.5
Q ss_pred CccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCccc-ccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLC-RRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLC-R~eV~ 520 (534)
.+.|+.|..-+.. ....| |+|.||..||..-|...-+.||.| |.+|.
T Consensus 274 ~LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 274 SLKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred cccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 3679999887664 23445 999999999999887767899999 54543
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.025 Score=60.08 Aligned_cols=45 Identities=33% Similarity=0.764 Sum_probs=34.9
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
.....|.||+++... ...+||||.-| |+.--.. ..+||+||..+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 345679999999765 78899999966 7666544 466999998764
No 74
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.024 Score=57.40 Aligned_cols=48 Identities=33% Similarity=0.751 Sum_probs=41.0
Q ss_pred ccccccccccccCC---eeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444 472 DQCYICLAEYEEGD---RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519 (534)
Q Consensus 472 ~eC~ICLEeFeegd---~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV 519 (534)
.+|-||-++|..++ .++.|.|||.|+..|+.+-+....-.||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998764 4677889999999999999887566799999974
No 75
>PHA03096 p28-like protein; Provisional
Probab=94.16 E-value=0.023 Score=58.75 Aligned_cols=45 Identities=27% Similarity=0.581 Sum_probs=32.0
Q ss_pred ccccccccccccCC----eeEEec-CCCccchhHHHHHHhcc--CCCCcccc
Q 043444 472 DQCYICLAEYEEGD----RIRLLP-CHHEYHMSCVDKWLKEI--HGVCPLCR 516 (534)
Q Consensus 472 ~eC~ICLEeFeegd----~vrvLP-CgH~FHk~CId~WLkk~--~~TCPLCR 516 (534)
..|.||++...... .-..|+ |.|.||..||..|-... ..+||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 56999999866432 234566 99999999999999762 23354443
No 76
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.021 Score=59.37 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=38.4
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV 519 (534)
...|-||...|.. .++..|+|.||..|...-+++ ...|++|-+..
T Consensus 241 Pf~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT 285 (313)
T ss_pred Ccccccccccccc---chhhcCCceeehhhhcccccc-CCcceeccccc
Confidence 4569999999985 677889999999999998886 78899996654
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.0075 Score=64.62 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=44.0
Q ss_pred CccccccccccccC-CeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEG-DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeeg-d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|+||.+.|... +++..+-|||.+|..||.+||.. ...||.|+.+|+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence 45799999998865 56667789999999999999997 78999999988754
No 78
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.16 E-value=0.052 Score=62.95 Aligned_cols=46 Identities=26% Similarity=0.771 Sum_probs=34.8
Q ss_pred CccccccccccccCCeeEE-ecCCCccchhHHHHHHhccC------CCCcccc
Q 043444 471 PDQCYICLAEYEEGDRIRL-LPCHHEYHMSCVDKWLKEIH------GVCPLCR 516 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrv-LPCgH~FHk~CId~WLkk~~------~TCPLCR 516 (534)
..+|.||++.+...+.+-- -.|-|+||..||.+|-+... -.||.|.
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 5689999999886554322 23789999999999998621 1399998
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=0.075 Score=54.41 Aligned_cols=52 Identities=17% Similarity=0.345 Sum_probs=43.4
Q ss_pred CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
....|+||.+.+...-...+| ||||+|+..|+.+.++. -..||+|-.++...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCccc
Confidence 456799999999877766666 69999999999999996 89999997766543
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.72 E-value=0.1 Score=55.74 Aligned_cols=48 Identities=29% Similarity=0.638 Sum_probs=36.9
Q ss_pred CCCCccccccccccccCCeeEEecCCCccchhHHHHH--HhccCCCCccccccc
Q 043444 468 GVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKW--LKEIHGVCPLCRRDV 519 (534)
Q Consensus 468 ~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~W--Lkk~~~TCPLCR~eV 519 (534)
.++...|.||-+.+. ...++||+|..|-.|..+. |- ....||+||.+-
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY-~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALY-MQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHH-hccCCCcccccc
Confidence 345667999998765 3678999999999997662 33 267899999854
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.036 Score=57.75 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=31.5
Q ss_pred CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|.|||+.-.+ ...|+|||. -|..|-.+ -..||+||+.|.+
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKR-----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhccc-----cccCchHHHHHHH
Confidence 5679999988554 678999994 45667332 2479999997753
No 82
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.26 E-value=0.056 Score=55.87 Aligned_cols=46 Identities=26% Similarity=0.532 Sum_probs=38.6
Q ss_pred CccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444 471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517 (534)
Q Consensus 471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~ 517 (534)
...||||.+.+.... .+..++|||.-|..|+...... +.+||+|-+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-CCCCCcccc
Confidence 445999999976554 5678899999999999999887 599999977
No 83
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.10 E-value=0.16 Score=51.50 Aligned_cols=53 Identities=15% Similarity=0.370 Sum_probs=40.7
Q ss_pred CCCccccccccccccCCeeE-EecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
.....|||+..+|......+ +.||||+|...||..-- . ...||+|-.++...+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~-~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K-SKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c-cccccccCCccccCC
Confidence 44678999999996544444 45899999999999973 2 467999988876554
No 84
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.85 E-value=0.27 Score=52.68 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=24.9
Q ss_pred CCCccchhHHHHHHhc------------cCCCCcccccccccCC
Q 043444 492 CHHEYHMSCVDKWLKE------------IHGVCPLCRRDVRQGA 523 (534)
Q Consensus 492 CgH~FHk~CId~WLkk------------~~~TCPLCR~eV~~~d 523 (534)
|.-.+|.+|+.+|+.. ++..||+||+.++--|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 6677899999999964 2446999999876543
No 85
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.34 E-value=0.091 Score=53.18 Aligned_cols=44 Identities=30% Similarity=0.731 Sum_probs=33.0
Q ss_pred cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
.|--|..-- .++...++.|+|+||..|...-.. ..||+||..|.
T Consensus 5 hCn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFP-SQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIR 48 (233)
T ss_pred EeccccccC-CCCceeeeechhhhhhhhcccCCc---cccccccceee
Confidence 577666543 377888889999999999765322 38999999864
No 86
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.32 E-value=0.079 Score=40.30 Aligned_cols=42 Identities=26% Similarity=0.659 Sum_probs=23.3
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhccCC-CCccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG-VCPLC 515 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~-TCPLC 515 (534)
|.+|.+....|..-..-.|+=.+|..|+..+++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788887666543222248889999999999996333 59987
No 87
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.20 E-value=0.088 Score=60.31 Aligned_cols=46 Identities=28% Similarity=0.749 Sum_probs=36.6
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCC-CCccccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG-VCPLCRRDVRQ 521 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~-TCPLCR~eV~~ 521 (534)
..|.||++ -+.....+|+|.||..|+..-+..... .||+||..+..
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 67999999 245678889999999999997775333 49999986643
No 88
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=0.14 Score=50.49 Aligned_cols=33 Identities=30% Similarity=0.937 Sum_probs=25.9
Q ss_pred ecCCCccchhHHHHHHhcc----------CCCCcccccccccC
Q 043444 490 LPCHHEYHMSCVDKWLKEI----------HGVCPLCRRDVRQG 522 (534)
Q Consensus 490 LPCgH~FHk~CId~WLkk~----------~~TCPLCR~eV~~~ 522 (534)
..||.-||.-|+..||+.. -..||+|-.++.-+
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4599999999999999852 12399998887543
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.78 E-value=0.25 Score=39.84 Aligned_cols=39 Identities=36% Similarity=0.870 Sum_probs=32.1
Q ss_pred CccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcc
Q 043444 471 PDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPL 514 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPL 514 (534)
...|++|-+.|.+++.+++.| ||-.||+.| |.+ ...|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~--~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEK--AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH---Hhh--CCceEe
Confidence 457999999999888888888 999999999 655 366755
No 90
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.6 Score=49.56 Aligned_cols=44 Identities=18% Similarity=0.516 Sum_probs=33.9
Q ss_pred CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCR 516 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR 516 (534)
.+...|+||+..... ..+|- -|-+||..||-.++.+ ++.||+=-
T Consensus 298 ~~~~~CpvClk~r~N---ptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~ 342 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN---PTVLEVSGYVFCYPCIFSYVVN-YGHCPVTG 342 (357)
T ss_pred CccccChhHHhccCC---CceEEecceEEeHHHHHHHHHh-cCCCCccC
Confidence 445689999987543 22333 5999999999999996 89999753
No 91
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.29 E-value=0.17 Score=50.78 Aligned_cols=52 Identities=29% Similarity=0.604 Sum_probs=38.9
Q ss_pred CccccccccccccCCe-eEEecCC-----CccchhHHHHHHhc-cCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDR-IRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~-vrvLPCg-----H~FHk~CId~WLkk-~~~TCPLCR~eV~~~ 522 (534)
+..|-||..+..+... ..+.||. +..|..|+.+|+.. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5689999998764332 4577865 67899999999984 356799998866544
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.16 E-value=0.28 Score=47.32 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=22.4
Q ss_pred CccccccccccccCCeeEEec------------CCC-ccchhHHHHHHhc
Q 043444 471 PDQCYICLAEYEEGDRIRLLP------------CHH-EYHMSCVDKWLKE 507 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLP------------CgH-~FHk~CId~WLkk 507 (534)
+..|+|||+.--. .++|- |+- .-|..|++++-+.
T Consensus 2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA 48 (162)
T ss_pred CccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence 4679999987432 33332 443 3578899998763
No 93
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=0.11 Score=59.00 Aligned_cols=44 Identities=30% Similarity=0.523 Sum_probs=34.0
Q ss_pred CccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccc
Q 043444 471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518 (534)
Q Consensus 471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~e 518 (534)
...|.||+..|.... ..+-|-|||..|++|+..... .+|| |+++
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCcc
Confidence 457999998886543 456677999999999998755 5899 6553
No 94
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=0.27 Score=53.07 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=41.2
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccC--CCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH--GVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~--~TCPLCR~eV 519 (534)
...|||=.+.-.+...+..|.|||+..+.-|.+..+.+. ..||+|=.+.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 457999888877778889999999999999999988754 6799995443
No 95
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=0.18 Score=58.78 Aligned_cols=44 Identities=25% Similarity=0.686 Sum_probs=33.8
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.+|--.++. +++-.-|||.||.+|+. . ....||-|+.++.
T Consensus 840 ~skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e---~-~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGTLDL--PFVHFLCGHSYHQHCLE---D-KEDKCPKCLPELR 883 (933)
T ss_pred eeeecccCCcccc--ceeeeecccHHHHHhhc---c-CcccCCccchhhh
Confidence 3579999887664 34555699999999998 3 3678999988554
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.86 E-value=0.21 Score=40.41 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=32.9
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
..|..|... +.+-.++||+|..+..|..-|= -+.||+|-.++...
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccChhh---ccCCCCCCCcccCC
Confidence 346666544 3345789999999999987763 46799998877654
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.37 E-value=0.22 Score=60.23 Aligned_cols=44 Identities=30% Similarity=0.691 Sum_probs=36.0
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~ 517 (534)
...|.||++.+..-. .+.-|||.||..|+..|+.. +..||+|+.
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 347999999987422 24459999999999999996 899999974
No 98
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=0.28 Score=57.40 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=29.7
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHh
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLK 506 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLk 506 (534)
...+.|.||...+-. ....+-||||.||..||.+-..
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 456789999988765 3567889999999999987553
No 99
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.21 E-value=0.25 Score=50.63 Aligned_cols=50 Identities=28% Similarity=0.599 Sum_probs=37.5
Q ss_pred Cccccccccccc--cCCeeEEec-CCCccchhHHHHHHhccCCCCc--ccccccc
Q 043444 471 PDQCYICLAEYE--EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCP--LCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFe--egd~vrvLP-CgH~FHk~CId~WLkk~~~TCP--LCR~eV~ 520 (534)
+..||||..+-- ++-+..+-| |-|..|..|+++.|..+...|| -|-+-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 457999997732 322333446 9999999999999998888999 7855443
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.97 E-value=0.55 Score=49.04 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=37.3
Q ss_pred cccccccc-cccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 473 QCYICLAE-YEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 473 eC~ICLEe-Feegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.|++|... |...+ .+.+-+|+|..|..|++..+..+...||-|-..+.+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 49999866 33222 2223379999999999999988778899997766554
No 101
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=85.66 E-value=0.39 Score=52.69 Aligned_cols=36 Identities=31% Similarity=0.621 Sum_probs=31.3
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk 507 (534)
+++..|+||...|++ +++|||+|..|..|...-+.+
T Consensus 2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccC---ceEeecccHHHHHHHHhhccc
Confidence 346789999999986 789999999999999987764
No 102
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.56 E-value=0.62 Score=54.21 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCccccccccccccC-CeeEEec---CCCccchhHHHHHHhc-----cCCCCccccccc
Q 043444 470 EPDQCYICLAEYEEG-DRIRLLP---CHHEYHMSCVDKWLKE-----IHGVCPLCRRDV 519 (534)
Q Consensus 470 e~~eC~ICLEeFeeg-d~vrvLP---CgH~FHk~CId~WLkk-----~~~TCPLCR~eV 519 (534)
+...|.||..+|... +..-.+| |+|.||..||..|+.+ .+..|+.|.+-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 456799999888763 2334556 9999999999999975 355688887644
No 103
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.09 E-value=0.56 Score=48.44 Aligned_cols=54 Identities=28% Similarity=0.655 Sum_probs=37.1
Q ss_pred CCCCccccccccccccCCee-EEecCC-----CccchhHHHHHHhcc-------CCCCccccccccc
Q 043444 468 GVEPDQCYICLAEYEEGDRI-RLLPCH-----HEYHMSCVDKWLKEI-------HGVCPLCRRDVRQ 521 (534)
Q Consensus 468 ~~e~~eC~ICLEeFeegd~v-rvLPCg-----H~FHk~CId~WLkk~-------~~TCPLCR~eV~~ 521 (534)
.+.+.-|-||+..=++.... -+-||. |..|..|+..|+.+. .-.||.|+.+...
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 34467799999874433221 234664 789999999999762 2249999998754
No 104
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=81.43 E-value=0.5 Score=49.96 Aligned_cols=43 Identities=28% Similarity=0.659 Sum_probs=30.1
Q ss_pred cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
-|.-|-..+.. .-+.+||.|+||.+|...- .-+.||.|-..|.
T Consensus 92 fCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIPCKHVFCLECARSD---SDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCccee--eecccccchhhhhhhhhcC---ccccCcCcccHHH
Confidence 46667655443 3467899999999996542 2458999977664
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.28 E-value=0.92 Score=45.11 Aligned_cols=40 Identities=30% Similarity=0.716 Sum_probs=28.6
Q ss_pred ccccccccccCCeeEEecCCC-ccchhHHHHHHhccCCCCccccccccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHH-EYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH-~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
|-+|-+. +..+..|||.| .+|..|=.. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 6666654 45688999997 578889544 3469999886543
No 106
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=1 Score=47.39 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=25.4
Q ss_pred CCCccchhHHHHHHhc------------cCCCCcccccccccCC
Q 043444 492 CHHEYHMSCVDKWLKE------------IHGVCPLCRRDVRQGA 523 (534)
Q Consensus 492 CgH~FHk~CId~WLkk------------~~~TCPLCR~eV~~~d 523 (534)
|...+|..|+.+|+-. ++.+||+||+.++-.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 6678899999999853 3567999999887654
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.73 E-value=0.84 Score=49.12 Aligned_cols=37 Identities=30% Similarity=0.720 Sum_probs=27.8
Q ss_pred CccccccccccccC-CeeEEecCCCccchhHHHHHHhc
Q 043444 471 PDQCYICLAEYEEG-DRIRLLPCHHEYHMSCVDKWLKE 507 (534)
Q Consensus 471 ~~eC~ICLEeFeeg-d~vrvLPCgH~FHk~CId~WLkk 507 (534)
..+|.||+.++... +...++.|+|.||..|+.+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56899999554443 34445669999999999988873
No 108
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=77.78 E-value=1.4 Score=46.14 Aligned_cols=44 Identities=25% Similarity=0.643 Sum_probs=34.0
Q ss_pred CCCccccccccccccCCeeEEecC--CCccchhHHHHHHhccCCCCcccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPC--HHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPC--gH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
.+-.+||||.+.+.+ -++.| ||.-|..|-.+ ....||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~----Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSP----PIFQCDNGHLACSSCRTK----VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCcc----cceecCCCcEehhhhhhh----hcccCCccccccc
Confidence 445789999999875 35557 68888888653 3678999999876
No 109
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=76.56 E-value=1.3 Score=46.01 Aligned_cols=49 Identities=33% Similarity=0.712 Sum_probs=34.9
Q ss_pred CccccccccccccCCeeE-Eec---CCCccchhHHHHHHhc--------cCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIR-LLP---CHHEYHMSCVDKWLKE--------IHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vr-vLP---CgH~FHk~CId~WLkk--------~~~TCPLCR~eV 519 (534)
..+|.||.++|.+.+..+ ..| |.-.+|..|+..-+.. ....||.|++-+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 368999999995444333 333 9999999999995443 134599998744
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.33 E-value=0.69 Score=53.15 Aligned_cols=49 Identities=31% Similarity=0.671 Sum_probs=37.6
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLCR~eV~~~ 522 (534)
..+|+||+..|... ..+.|-|.|+..|+..-|.. ....||+|+..+.+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 46799999998763 67789999999998875543 235699999766543
No 111
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=75.21 E-value=1.6 Score=34.78 Aligned_cols=44 Identities=23% Similarity=0.649 Sum_probs=24.7
Q ss_pred cccccccccccCCeeEEecCC-CccchhHHHHHHhccCCCCcccccccccC
Q 043444 473 QCYICLAEYEEGDRIRLLPCH-HEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCg-H~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.|--|.-+.. -...|. |..|..|+...|.. ...||+|..+++..
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE----
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhcc-ccCCCcccCcCccc
Confidence 3555654432 244586 99999999999995 88899999998764
No 112
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=72.57 E-value=2.7 Score=49.34 Aligned_cols=52 Identities=23% Similarity=0.578 Sum_probs=37.8
Q ss_pred CCCccccccccccccCCeeEEecCC-----CccchhHHHHHHhc-cCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCg-----H~FHk~CId~WLkk-~~~TCPLCR~eV~~ 521 (534)
++...|-||..+=.++++ ..=||+ ...|.+|+..|+.- ....|-+|..++.-
T Consensus 10 ~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 345789999988555443 345665 46899999999985 24569999887743
No 113
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.95 E-value=2.2 Score=49.76 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=22.5
Q ss_pred eEEecCCCccchhHHHHHHhccCCCCcc
Q 043444 487 IRLLPCHHEYHMSCVDKWLKEIHGVCPL 514 (534)
Q Consensus 487 vrvLPCgH~FHk~CId~WLkk~~~TCPL 514 (534)
..+.-|+|.-|..|...|+.. ...||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~-gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRT-GDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhc-CCcCCC
Confidence 345569999999999999996 678875
No 114
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.72 E-value=2.3 Score=47.55 Aligned_cols=49 Identities=37% Similarity=0.832 Sum_probs=39.3
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATE 525 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse 525 (534)
.....|.||+.+. ..+..+|. |..|+.+|+.. ..+||+|+..+...+..
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~-~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYV-QEVCPLCHTYMKEDDFL 525 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhh-ccccCCCchhhhccccc
Confidence 4467899999998 35677788 99999999995 88999998877655443
No 115
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=71.54 E-value=1.3 Score=50.13 Aligned_cols=41 Identities=24% Similarity=0.668 Sum_probs=27.1
Q ss_pred Cccccccccc-----cccCCeeEEecCCCccchhHHHHHHhccCCCCccc
Q 043444 471 PDQCYICLAE-----YEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC 515 (534)
Q Consensus 471 ~~eC~ICLEe-----Feegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLC 515 (534)
..-|.||... |+.....+..-|++.||+.|+.. + ..-||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~-s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---K-SPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---c-CCCCCch
Confidence 4568888432 44323344556999999999554 2 4559999
No 116
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.76 E-value=3.2 Score=39.32 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=36.8
Q ss_pred CccccccccccccCCeeEEec---CCCccchhHHHHHHhc--cCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLP---CHHEYHMSCVDKWLKE--IHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLP---CgH~FHk~CId~WLkk--~~~TCPLCR~eV~~~ 522 (534)
-.+|-||.+.-.+.. -.-| ||-..|..|-...|+. .+.+||+|++.+-..
T Consensus 80 lYeCnIC~etS~ee~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEER--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhh--cCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 468999999865422 1223 9999999998887764 467799999877543
No 118
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.91 E-value=3 Score=45.48 Aligned_cols=35 Identities=31% Similarity=0.628 Sum_probs=30.5
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk 507 (534)
..+|-||++.+.. .+..+.|+|.|+..|+...|.+
T Consensus 70 ~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 70 DVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred cccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 5689999999865 5678889999999999999976
No 119
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.69 E-value=4 Score=43.58 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=36.8
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLC 515 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLC 515 (534)
...||+-.+.-.+...+..|.|||+.-+.-++..-+. ..+.||+|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 4579997777666677889999999999999987775 34569999
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.87 E-value=5.7 Score=46.42 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=29.3
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPL 514 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPL 514 (534)
..|.+|-..+.. ..+-.--|+|.=|..|+.+|+.+ +.-||.
T Consensus 780 ~~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~-~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFK-ASPCAK 820 (839)
T ss_pred cCceeecceeee-eEeecccccccccHHHHHHHHhc-CCCCcc
Confidence 368888766542 11111229999999999999996 777876
No 121
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.94 E-value=1.8 Score=32.68 Aligned_cols=44 Identities=34% Similarity=0.646 Sum_probs=30.0
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhc-----cCCCCccccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-----IHGVCPLCRR 517 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-----~~~TCPLCR~ 517 (534)
|.||......++.+.--.|+..||..|+..=... ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 8899984444333333459999999999875542 1456998864
No 122
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=57.02 E-value=5.4 Score=40.46 Aligned_cols=42 Identities=31% Similarity=0.869 Sum_probs=33.3
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC 515 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLC 515 (534)
-..|.+|.+-.-.+ ++.=.|+=.||..|+..++++ ...||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~-~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQR-RDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcc-cCcCCch
Confidence 45799999875432 334458889999999999997 8899999
No 123
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.87 E-value=5 Score=47.03 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=32.9
Q ss_pred CccccccccccccC----CeeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444 471 PDQCYICLAEYEEG----DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517 (534)
Q Consensus 471 ~~eC~ICLEeFeeg----d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~ 517 (534)
+..|.-|++..-.. +.+.++.|+|.||+.|+.--..+ +.|-.|-.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~--~~~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR--NACNIESG 832 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh--cccChhhc
Confidence 44799998876532 35678899999999999887764 23766643
No 124
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=52.86 E-value=8.6 Score=37.88 Aligned_cols=40 Identities=30% Similarity=0.722 Sum_probs=27.0
Q ss_pred Cccccccccc-----cccCCeeEEecCCCccchhHHHHHHhccCCCCcccc
Q 043444 471 PDQCYICLAE-----YEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR 516 (534)
Q Consensus 471 ~~eC~ICLEe-----Feegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR 516 (534)
+..|.||-.. |......+.-.|+-.||+.|..+ ..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcH
Confidence 4679999853 33323333334999999999652 4699993
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=51.54 E-value=13 Score=25.62 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=24.3
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV 519 (534)
|..|-+.+..++.. +..=+..||..| ..|..|...|
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~C---------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPEC---------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccC---------CCCcccCCcC
Confidence 88888887765333 222478899877 5677776655
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.12 E-value=11 Score=40.18 Aligned_cols=52 Identities=25% Similarity=0.584 Sum_probs=38.0
Q ss_pred CccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
...|+||.+.....+ ...-.||++..|..|...-.. .+..||.||.......
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccCc
Confidence 357999999874443 333445888888888888777 4899999997665543
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.60 E-value=9 Score=41.42 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=32.3
Q ss_pred CccccccccccccCC--eeEEecCCCccchhHHHHHHhccCCCCccc-ccc
Q 043444 471 PDQCYICLAEYEEGD--RIRLLPCHHEYHMSCVDKWLKEIHGVCPLC-RRD 518 (534)
Q Consensus 471 ~~eC~ICLEeFeegd--~vrvLPCgH~FHk~CId~WLkk~~~TCPLC-R~e 518 (534)
-.+|++|.-.++-.+ ......|||.||..|...|... ...|..| |.+
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~-~~~~~~~~r~~ 355 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH-NGECYECCRYK 355 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC-CccccCccccc
Confidence 457999987765443 2233349999999999999884 5556444 543
No 128
>PLN02189 cellulose synthase
Probab=48.40 E-value=14 Score=44.74 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=38.3
Q ss_pred Cccccccccccc---cCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYE---EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFe---egd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.||-+++. .|+.-+... |+--.|+.|.+-=-++.+..||.|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 457999999975 444444444 88889999997766667889999988765
No 129
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=45.93 E-value=8.3 Score=44.84 Aligned_cols=62 Identities=23% Similarity=0.489 Sum_probs=39.3
Q ss_pred CccccccccccccCCe--eEEe-----cCCCccchhHHHHH--Hhc-------cCCCCcccccccccCCCCCCCCCCC
Q 043444 471 PDQCYICLAEYEEGDR--IRLL-----PCHHEYHMSCVDKW--LKE-------IHGVCPLCRRDVRQGATESSNSEIP 532 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~--vrvL-----PCgH~FHk~CId~W--Lkk-------~~~TCPLCR~eV~~~dse~sssE~P 532 (534)
...|.||-|+=.+.+. -.+| .|...||..|.+.- |-+ .-+.|-+|+..+.+..........|
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlkk~~~~k~ip 194 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLKKSPAIKVIP 194 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhhcCCCcccCC
Confidence 4579999988444331 1233 37789999998862 211 2456999998887665554444333
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=45.56 E-value=20 Score=31.27 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=23.3
Q ss_pred Ccccccccccccc---CCeeE-EecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEE---GDRIR-LLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFee---gd~vr-vLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.||-+++.. |+..+ ..-|+--.|+.|..-=.+..+..||.|+....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4579999998753 33222 23488889999999888888889999997664
No 131
>PLN02436 cellulose synthase A
Probab=44.61 E-value=17 Score=44.19 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=38.3
Q ss_pred Cccccccccccc---cCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYE---EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFe---egd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.||-+++. +|+.-+-.. |+--.|+.|.+-=.++.+..||.|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 457999999964 445444444 88889999997766667889999988765
No 132
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.95 E-value=4.4 Score=41.18 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=38.6
Q ss_pred CccccccccccccC---CeeEEec--------CCCccchhHHHHHHhccCCCCcccccc
Q 043444 471 PDQCYICLAEYEEG---DRIRLLP--------CHHEYHMSCVDKWLKEIHGVCPLCRRD 518 (534)
Q Consensus 471 ~~eC~ICLEeFeeg---d~vrvLP--------CgH~FHk~CId~WLkk~~~TCPLCR~e 518 (534)
...|.||...|... ...+++. |+|..+..|+..-+.+....||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46799999999843 2456677 999999999999988644689999864
No 133
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.69 E-value=11 Score=26.23 Aligned_cols=22 Identities=32% Similarity=0.701 Sum_probs=13.3
Q ss_pred cccccccccccCCeeEEec-CCCcc
Q 043444 473 QCYICLAEYEEGDRIRLLP-CHHEY 496 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLP-CgH~F 496 (534)
.|+-|...+.. .....| |||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 47777777643 233445 77766
No 134
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=41.65 E-value=23 Score=38.15 Aligned_cols=46 Identities=24% Similarity=0.624 Sum_probs=31.7
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~e 518 (534)
..|-.|..+.......+.-.|.|.||..|= .++-+.=..||-|.+.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCD-VFIHESLHNCPGCEHK 376 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccch-HHHHhhhhcCCCcCCC
Confidence 459999777666555555569999999993 3333323469999753
No 135
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=37.50 E-value=7.1 Score=40.94 Aligned_cols=37 Identities=30% Similarity=0.545 Sum_probs=30.7
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhcc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI 508 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~ 508 (534)
..|.||+++|..+......-|-..||..|+-.|+++.
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 3899999999876666666666699999999999973
No 136
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=35.87 E-value=30 Score=37.28 Aligned_cols=53 Identities=23% Similarity=0.547 Sum_probs=34.0
Q ss_pred CCCccccccccccc---------------cCCe-eEEecCCCccchhHHHHHHhc--------cCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYE---------------EGDR-IRLLPCHHEYHMSCVDKWLKE--------IHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFe---------------egd~-vrvLPCgH~FHk~CId~WLkk--------~~~TCPLCR~eV~~ 521 (534)
..+.+|++|+..=. .|.. -.--||||.--..-+.-|-+- -+..||.|-+.+-.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 44678999996511 1111 123489998877787778763 14469999776543
No 137
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.72 E-value=33 Score=36.43 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=29.0
Q ss_pred CCccccccccccccCCeeEEec--CCCccchhHHHHHHhcc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLP--CHHEYHMSCVDKWLKEI 508 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLP--CgH~FHk~CId~WLkk~ 508 (534)
..+.|.+|.|-+++.. .+..| =.|.||+.|-..-+|++
T Consensus 267 apLcCTLC~ERLEDTH-FVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH-FVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCc-eeecCCCcccceecccCHHHHHhh
Confidence 3478999999998633 33434 36999999999999863
No 138
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=34.79 E-value=22 Score=30.10 Aligned_cols=13 Identities=31% Similarity=1.017 Sum_probs=9.7
Q ss_pred ccchhHHHHHHhc
Q 043444 495 EYHMSCVDKWLKE 507 (534)
Q Consensus 495 ~FHk~CId~WLkk 507 (534)
-||+.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 139
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=34.63 E-value=4.4 Score=34.43 Aligned_cols=40 Identities=25% Similarity=0.530 Sum_probs=21.4
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
..||.|..++.... +|.+|..|-..+.+ ...||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccccee--cccCCCcccHHH
Confidence 46999998865422 66667777665444 467999988764
No 140
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=34.60 E-value=13 Score=40.75 Aligned_cols=31 Identities=29% Similarity=0.630 Sum_probs=0.0
Q ss_pred CeeEEecCCCccchhHHHHHHhc-----cCCCCcccccc
Q 043444 485 DRIRLLPCHHEYHMSCVDKWLKE-----IHGVCPLCRRD 518 (534)
Q Consensus 485 d~vrvLPCgH~FHk~CId~WLkk-----~~~TCPLCR~e 518 (534)
+..+-|.|||++..+ .|-.+ ....||+||..
T Consensus 302 qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ---------------------------------------
T ss_pred Cceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 345678899987664 47542 14679999874
No 141
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=32.61 E-value=39 Score=26.45 Aligned_cols=43 Identities=19% Similarity=0.498 Sum_probs=19.7
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhc----cCCCCccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----IHGVCPLCRR 517 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----~~~TCPLCR~ 517 (534)
..|+|....+.. .++-..|.|.-+.+ +..||.. ..-.||+|.+
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEe--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 468998887754 45666699974432 3345543 2235999975
No 142
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=32.58 E-value=38 Score=41.49 Aligned_cols=50 Identities=20% Similarity=0.462 Sum_probs=36.8
Q ss_pred Cccccccccccc---cCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYE---EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFe---egd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.||-+++. .|+.-+... |+--.|+.|.+==-++++..||.|++...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 457999999975 344333333 88889999997655667888999988664
No 143
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=32.03 E-value=22 Score=28.50 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=18.8
Q ss_pred CCccccccccccccCCeeEEe-cCCCccchhHHHHHHh
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLK 506 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLk 506 (534)
+...|.+|...|..-..-..- .||+.|+..|....+.
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 456799999999754332233 3999999999876543
No 144
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.00 E-value=28 Score=36.38 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=28.7
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE 507 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk 507 (534)
-+-|..||..+.. +++.|=||+|+++||..++..
T Consensus 43 FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cceeeeecccccC---CccCCCCeeeeHHHHHHHHHH
Confidence 4569999999875 678889999999999998753
No 145
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=31.01 E-value=38 Score=27.12 Aligned_cols=42 Identities=26% Similarity=0.793 Sum_probs=20.7
Q ss_pred ccccccccccCC------eeEEec-CCCccchhHHHHHHhccCCCCcccc
Q 043444 474 CYICLAEYEEGD------RIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCR 516 (534)
Q Consensus 474 C~ICLEeFeegd------~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR 516 (534)
|.-|+..|.... ....-| |++.|+.+| +-++-+.=..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 666777777642 223344 999999999 333333234698873
No 146
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=30.95 E-value=42 Score=25.51 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=25.8
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
|.-|-..+..++.+ +..-+..||..| ..|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C---------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC---------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT---------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc---------cccCCCCCccCCC
Confidence 66777777754433 234677888866 6788887776554
No 147
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=29.96 E-value=58 Score=39.86 Aligned_cols=51 Identities=20% Similarity=0.457 Sum_probs=37.8
Q ss_pred CCccccccccccc---cCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccc
Q 043444 470 EPDQCYICLAEYE---EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 470 e~~eC~ICLEeFe---egd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
....|.||-++.. .|+.-+... |+--.|+.|.+-=.++++..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3567999999975 334333333 88889999997666667889999988765
No 148
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.72 E-value=30 Score=25.40 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=16.3
Q ss_pred ccccccccccccCCe--------eEEecCCCccc
Q 043444 472 DQCYICLAEYEEGDR--------IRLLPCHHEYH 497 (534)
Q Consensus 472 ~eC~ICLEeFeegd~--------vrvLPCgH~FH 497 (534)
..|+-|...|...+. ++.-.|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368899888875442 22223778775
No 149
>PLN02195 cellulose synthase A
Probab=27.21 E-value=63 Score=39.31 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=37.1
Q ss_pred Ccccccccccccc---CCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEE---GDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFee---gd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.||-+++.. |+..+.. -|+--.|+.|.+==-++++..||.|+....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3469999998653 3433333 388889999996666667888999988776
No 150
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.13 E-value=40 Score=33.85 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=20.2
Q ss_pred ccccccccccccCCeeEEecCCCccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYH 497 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FH 497 (534)
..||||...+...+.....+++|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 46999999997666655666789883
No 151
>PLN02400 cellulose synthase
Probab=25.90 E-value=46 Score=40.83 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=36.3
Q ss_pred Cccccccccccc---cCCeeEE-ecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYE---EGDRIRL-LPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFe---egd~vrv-LPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.||-+++. +|+.-+. --|+---|+.|-+==-++.+..||.|+...-
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 457999999975 3343333 3388889999986555557788999988664
No 152
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=25.06 E-value=83 Score=26.00 Aligned_cols=47 Identities=19% Similarity=0.541 Sum_probs=33.5
Q ss_pred ccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 472 DQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 472 ~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..|-.|-.++.++. ...+..=...||..|...-|. ..||-|-.++..
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 35888888887655 333322225799999999875 689999887754
No 153
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=24.83 E-value=22 Score=39.76 Aligned_cols=47 Identities=28% Similarity=0.663 Sum_probs=31.0
Q ss_pred Cccccccccc-cccCCeeEEe-cCCCccchhHHHHHHhc-------cCCCCccccc
Q 043444 471 PDQCYICLAE-YEEGDRIRLL-PCHHEYHMSCVDKWLKE-------IHGVCPLCRR 517 (534)
Q Consensus 471 ~~eC~ICLEe-Feegd~vrvL-PCgH~FHk~CId~WLkk-------~~~TCPLCR~ 517 (534)
..+|.+|+.- ...+..++.. .|+-.||..|..+..+. ....|-.|..
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 4569999954 3333333333 38999999998887653 1335988854
No 154
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=24.20 E-value=40 Score=38.90 Aligned_cols=44 Identities=18% Similarity=0.386 Sum_probs=30.3
Q ss_pred CccccccccccccCCeeEEecCCCccch--hHHHH-HHhcc-----CCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHM--SCVDK-WLKEI-----HGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk--~CId~-WLkk~-----~~TCPLCR~eV~~ 521 (534)
.+.|+|+..- ..+||.+..|+ .|++. |+.+. .-.||+|.+....
T Consensus 306 SL~CPl~~~R-------m~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 306 SLNCPLSKMR-------MSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred EecCCcccce-------eecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc
Confidence 4579988754 46788888888 69887 65432 2249999775543
No 155
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=23.73 E-value=58 Score=28.34 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=22.0
Q ss_pred CccccccccccccCCeeEEec--CCCccchhHHHH
Q 043444 471 PDQCYICLAEYEEGDRIRLLP--CHHEYHMSCVDK 503 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLP--CgH~FHk~CId~ 503 (534)
...|.||... .|..+..-- |...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 4679999987 333333333 888999999866
No 156
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.21 E-value=24 Score=38.62 Aligned_cols=37 Identities=19% Similarity=0.496 Sum_probs=27.7
Q ss_pred CccccccccccccCCe---eE--EecCCCccchhHHHHHHhc
Q 043444 471 PDQCYICLAEYEEGDR---IR--LLPCHHEYHMSCVDKWLKE 507 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~---vr--vLPCgH~FHk~CId~WLkk 507 (534)
...||.|...++.... +. ..+|.|.||..|+..|-..
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 3459999999876552 12 2359999999999999874
No 157
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.55 E-value=1.1e+02 Score=32.33 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=37.3
Q ss_pred CCccccccccccccCCe-eEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444 470 EPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT 524 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds 524 (534)
....|+|---+|..... +...+|||+|-..-+...- ..+|++|-+.+...+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCe
Confidence 35679998877764433 3456799999987766642 4689999988766553
No 158
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=21.91 E-value=55 Score=25.10 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=25.2
Q ss_pred ccccccccccccCCe-eEEecCCCccchhHHHHHHh
Q 043444 472 DQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLK 506 (534)
Q Consensus 472 ~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLk 506 (534)
..|.+|-..|..... ...-.||+.|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 469999988875332 22234999999999877654
No 159
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=21.53 E-value=29 Score=43.61 Aligned_cols=50 Identities=20% Similarity=0.555 Sum_probs=38.2
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhcc---CCCCccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRRDV 519 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---~~TCPLCR~eV 519 (534)
....|.||.....+...+...-|.-.||..|+.+-+... .-.||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 356799999987764444455589999999999988762 23599998866
No 160
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=38 Score=36.18 Aligned_cols=53 Identities=25% Similarity=0.586 Sum_probs=39.8
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT 524 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds 524 (534)
.....|.||...+.... +.-.|.|.|+..|...|... ...||.|+.......+
T Consensus 103 ~~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~pv~a 155 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKISPVLA 155 (324)
T ss_pred CCccceeeeeeeEEecc--cccCceeeeeecCCchhhhh-hhccchhhcCcCceec
Confidence 44667999998876422 22239999999999999995 7899999887655443
No 162
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=20.45 E-value=34 Score=37.71 Aligned_cols=50 Identities=20% Similarity=0.511 Sum_probs=0.0
Q ss_pred Cccccccccccc-------------cC-C--eeEEecCCCccchhHHHHHHhc--------cCCCCcccccccc
Q 043444 471 PDQCYICLAEYE-------------EG-D--RIRLLPCHHEYHMSCVDKWLKE--------IHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFe-------------eg-d--~vrvLPCgH~FHk~CId~WLkk--------~~~TCPLCR~eV~ 520 (534)
..+|++|+..=. .+ . ...--||||.--.....-|-+- -+..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 568999996511 11 1 1234589999888888889763 1346999977765
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.15 E-value=68 Score=38.15 Aligned_cols=44 Identities=34% Similarity=0.700 Sum_probs=27.3
Q ss_pred Cccccccccccc----cC----CeeEE-ec-CCCccchhHHHHHHhccCCCCccccccc
Q 043444 471 PDQCYICLAEYE----EG----DRIRL-LP-CHHEYHMSCVDKWLKEIHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFe----eg----d~vrv-LP-CgH~FHk~CId~WLkk~~~TCPLCR~eV 519 (534)
+.+|+-|...|. .| +.... .| |.|.-|.+=|.+ .+.||+|-..+
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~-----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK-----YNCCPLCHSME 1184 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc-----cccCccccChh
Confidence 456776766653 11 12222 23 999998877654 68899996544
No 164
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.13 E-value=1.3e+02 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=20.9
Q ss_pred CCccchhHHHHHHhc--------cCCCCccccccc
Q 043444 493 HHEYHMSCVDKWLKE--------IHGVCPLCRRDV 519 (534)
Q Consensus 493 gH~FHk~CId~WLkk--------~~~TCPLCR~eV 519 (534)
.-.||..||..++.+ ..-.||.||..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 678999999999864 234599998743
Done!