Query 043444
Match_columns 534
No_of_seqs 207 out of 1452
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 9E-16 3.1E-20 128.2 7.9 78 442-522 13-90 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.5E-15 5.2E-20 121.6 4.9 70 449-522 4-73 (75)
3 2ect_A Ring finger protein 126 99.5 2.3E-14 7.7E-19 115.1 6.2 63 469-532 13-75 (78)
4 2kiz_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 111.7 6.6 55 469-524 12-66 (69)
5 2ep4_A Ring finger protein 24; 99.5 6E-14 2E-18 111.6 6.8 55 469-524 13-67 (74)
6 1iym_A EL5; ring-H2 finger, ub 99.4 3.4E-14 1.2E-18 106.8 3.4 50 470-520 4-54 (55)
7 1v87_A Deltex protein 2; ring- 99.4 3.2E-13 1.1E-17 115.6 5.6 59 471-529 25-102 (114)
8 2ecm_A Ring finger and CHY zin 99.4 3.2E-13 1.1E-17 101.2 4.7 50 470-520 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.4 3.4E-13 1.1E-17 110.7 5.0 52 470-522 14-77 (81)
10 2ea6_A Ring finger protein 4; 99.3 8.8E-13 3E-17 102.4 5.2 52 469-521 13-68 (69)
11 3dpl_R Ring-box protein 1; ubi 99.3 3.5E-13 1.2E-17 117.3 2.4 65 455-520 21-100 (106)
12 3ng2_A RNF4, snurf, ring finge 99.3 8.2E-13 2.8E-17 103.6 4.0 54 469-523 8-65 (71)
13 2xeu_A Ring finger protein 4; 99.3 1.3E-12 4.5E-17 100.1 4.0 52 470-522 2-57 (64)
14 2ecn_A Ring finger protein 141 99.3 1.7E-12 5.9E-17 102.1 3.8 54 469-527 13-66 (70)
15 2ct2_A Tripartite motif protei 99.2 7.8E-12 2.7E-16 101.6 6.1 54 469-522 13-69 (88)
16 2djb_A Polycomb group ring fin 99.2 1E-11 3.5E-16 98.8 6.4 52 469-524 13-65 (72)
17 2d8t_A Dactylidin, ring finger 99.2 3.1E-12 1.1E-16 101.5 3.3 51 469-523 13-63 (71)
18 4a0k_B E3 ubiquitin-protein li 99.2 5.8E-13 2E-17 118.3 -1.8 68 452-520 29-111 (117)
19 2d8s_A Cellular modulator of i 99.2 1.5E-11 5.1E-16 102.1 6.3 54 469-523 13-72 (80)
20 1chc_A Equine herpes virus-1 r 99.2 6.4E-12 2.2E-16 98.1 3.8 50 470-522 4-53 (68)
21 2ysl_A Tripartite motif-contai 99.2 1.3E-11 4.4E-16 97.5 5.1 51 469-522 18-70 (73)
22 2csy_A Zinc finger protein 183 99.2 1.9E-11 6.4E-16 99.1 5.5 48 469-520 13-60 (81)
23 2yur_A Retinoblastoma-binding 99.2 2.1E-11 7.2E-16 97.7 5.7 53 469-524 13-67 (74)
24 2ecy_A TNF receptor-associated 99.2 1.3E-11 4.5E-16 96.4 4.2 51 469-522 13-63 (66)
25 4ayc_A E3 ubiquitin-protein li 99.2 9.5E-12 3.3E-16 110.9 2.9 47 471-521 53-99 (138)
26 1t1h_A Gspef-atpub14, armadill 99.1 3.5E-11 1.2E-15 96.5 4.8 51 469-522 6-56 (78)
27 1g25_A CDK-activating kinase a 99.1 4.8E-11 1.6E-15 92.9 4.3 52 471-522 3-56 (65)
28 2ecw_A Tripartite motif-contai 99.1 7.8E-11 2.7E-15 94.4 5.7 51 469-522 17-72 (85)
29 3lrq_A E3 ubiquitin-protein li 99.1 2.7E-11 9.2E-16 102.7 3.0 49 471-522 22-71 (100)
30 4ap4_A E3 ubiquitin ligase RNF 99.1 5.1E-11 1.7E-15 102.6 4.0 52 470-522 6-61 (133)
31 2ysj_A Tripartite motif-contai 99.1 9.7E-11 3.3E-15 90.5 5.2 44 469-515 18-63 (63)
32 2ecv_A Tripartite motif-contai 99.1 1.1E-10 3.7E-15 93.6 4.9 51 469-522 17-72 (85)
33 2egp_A Tripartite motif-contai 99.1 2.6E-11 9E-16 96.8 1.1 51 469-522 10-66 (79)
34 3fl2_A E3 ubiquitin-protein li 99.1 1.1E-10 3.9E-15 101.7 5.1 48 471-521 52-99 (124)
35 2ct0_A Non-SMC element 1 homol 99.0 1.1E-10 3.6E-15 96.3 4.1 54 469-525 13-68 (74)
36 2ecj_A Tripartite motif-contai 99.0 1.4E-10 4.6E-15 87.5 3.8 44 469-515 13-58 (58)
37 3ztg_A E3 ubiquitin-protein li 99.0 1.9E-10 6.6E-15 94.8 5.0 49 469-520 11-61 (92)
38 2y43_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 97.3 4.1 47 471-521 22-69 (99)
39 4ap4_A E3 ubiquitin ligase RNF 99.0 1.3E-10 4.6E-15 99.9 4.1 53 469-522 70-126 (133)
40 2ckl_A Polycomb group ring fin 99.0 1.5E-10 5.1E-15 98.7 4.2 49 470-522 14-63 (108)
41 2ckl_B Ubiquitin ligase protei 99.0 2E-10 6.7E-15 104.7 4.3 50 470-521 53-102 (165)
42 3l11_A E3 ubiquitin-protein li 99.0 7.6E-11 2.6E-15 101.3 0.1 50 469-521 13-62 (115)
43 1z6u_A NP95-like ring finger p 98.9 3.7E-10 1.3E-14 102.9 4.4 49 471-522 78-126 (150)
44 3hct_A TNF receptor-associated 98.9 5.7E-10 1.9E-14 96.8 4.8 51 469-522 16-66 (118)
45 1jm7_A BRCA1, breast cancer ty 98.9 3.1E-10 1E-14 96.2 3.1 49 471-522 21-71 (112)
46 1rmd_A RAG1; V(D)J recombinati 98.9 7.5E-10 2.6E-14 95.2 4.1 50 471-523 23-72 (116)
47 2kr4_A Ubiquitin conjugation f 98.9 1.8E-09 6.1E-14 89.6 5.5 50 469-522 12-61 (85)
48 1e4u_A Transcriptional repress 98.9 1.9E-09 6.3E-14 88.9 5.5 57 469-526 9-67 (78)
49 2kre_A Ubiquitin conjugation f 98.8 1.9E-09 6.5E-14 92.4 5.1 50 469-522 27-76 (100)
50 1wgm_A Ubiquitin conjugation f 98.8 3.3E-09 1.1E-13 90.6 5.2 50 469-522 20-70 (98)
51 3knv_A TNF receptor-associated 98.8 1.2E-09 4.1E-14 98.7 2.3 49 469-520 29-77 (141)
52 2c2l_A CHIP, carboxy terminus 98.8 3.5E-09 1.2E-13 101.4 5.3 50 470-522 207-256 (281)
53 2y1n_A E3 ubiquitin-protein li 98.8 3.6E-09 1.2E-13 110.6 5.1 49 471-522 332-380 (389)
54 2vje_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 83.9 3.1 48 470-521 7-57 (64)
55 1bor_A Transcription factor PM 98.7 2.6E-09 8.9E-14 81.8 1.2 48 469-523 4-51 (56)
56 1jm7_B BARD1, BRCA1-associated 98.7 2.4E-09 8.3E-14 92.7 0.6 45 471-521 22-67 (117)
57 4ic3_A E3 ubiquitin-protein li 98.7 4E-09 1.4E-13 85.0 1.5 44 471-522 24-68 (74)
58 2vje_B MDM4 protein; proto-onc 98.7 7.9E-09 2.7E-13 81.2 3.0 48 470-521 6-56 (63)
59 2yu4_A E3 SUMO-protein ligase 98.7 1.7E-08 5.7E-13 85.0 5.0 47 469-518 5-59 (94)
60 3hcs_A TNF receptor-associated 98.6 1.6E-08 5.4E-13 92.4 4.4 51 469-522 16-66 (170)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.4E-08 4.9E-13 105.0 2.3 56 469-524 306-376 (381)
62 2f42_A STIP1 homology and U-bo 98.5 3.7E-08 1.3E-12 93.2 3.9 50 470-522 105-154 (179)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.5 8.5E-08 2.9E-12 75.5 3.9 49 469-520 4-58 (60)
64 1wim_A KIAA0161 protein; ring 98.4 8.1E-08 2.8E-12 80.1 3.3 49 470-518 4-61 (94)
65 2ecg_A Baculoviral IAP repeat- 98.4 5.6E-08 1.9E-12 78.2 1.9 44 471-522 25-69 (75)
66 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.5E-12 75.1 4.2 46 469-522 13-59 (68)
67 2yho_A E3 ubiquitin-protein li 98.3 1.2E-07 4.2E-12 77.7 1.5 44 471-522 18-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.2 5.2E-07 1.8E-11 90.2 3.5 52 469-522 179-233 (267)
69 3t6p_A Baculoviral IAP repeat- 98.2 2.8E-07 9.7E-12 94.7 1.6 45 470-522 294-339 (345)
70 2bay_A PRE-mRNA splicing facto 98.2 5.6E-07 1.9E-11 70.9 2.9 48 472-523 4-52 (61)
71 3vk6_A E3 ubiquitin-protein li 97.9 7.6E-06 2.6E-10 71.4 4.1 46 474-521 4-49 (101)
72 3nw0_A Non-structural maintena 97.6 2.2E-05 7.7E-10 76.9 3.6 52 471-524 180-232 (238)
73 2ko5_A Ring finger protein Z; 95.2 0.01 3.6E-07 51.4 3.1 57 471-533 28-85 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.9 0.043 1.5E-06 45.7 2.2 34 471-504 3-36 (101)
75 2lri_C Autoimmune regulator; Z 92.0 0.095 3.2E-06 42.0 3.1 48 469-519 10-60 (66)
76 1we9_A PHD finger family prote 83.6 0.25 8.5E-06 38.4 0.3 49 470-518 5-58 (64)
77 2k16_A Transcription initiatio 78.9 0.39 1.3E-05 38.5 -0.1 51 470-521 17-71 (75)
78 2xb1_A Pygopus homolog 2, B-ce 76.5 0.49 1.7E-05 40.8 -0.1 50 471-520 3-63 (105)
79 1wev_A Riken cDNA 1110020M19; 75.5 0.59 2E-05 39.1 0.1 56 471-526 16-80 (88)
80 3lqh_A Histone-lysine N-methyl 75.2 0.86 2.9E-05 43.1 1.1 48 472-519 3-64 (183)
81 2l5u_A Chromodomain-helicase-D 73.7 1.1 3.9E-05 34.8 1.3 47 469-518 9-58 (61)
82 1wil_A KIAA1045 protein; ring 73.5 2 6.9E-05 36.6 2.9 32 469-504 13-47 (89)
83 3u5n_A E3 ubiquitin-protein li 72.8 0.77 2.6E-05 43.4 0.1 46 470-519 6-55 (207)
84 1mm2_A MI2-beta; PHD, zinc fin 72.7 0.6 2.1E-05 36.4 -0.5 50 469-521 7-59 (61)
85 1f62_A Transcription factor WS 72.3 1 3.4E-05 33.5 0.7 45 473-517 2-49 (51)
86 3m62_A Ubiquitin conjugation f 72.2 2.3 7.9E-05 49.3 3.9 50 469-522 889-939 (968)
87 2lv9_A Histone-lysine N-methyl 72.1 0.92 3.2E-05 38.5 0.5 46 471-517 28-75 (98)
88 3o36_A Transcription intermedi 71.0 0.74 2.5E-05 42.6 -0.4 46 471-519 4-52 (184)
89 2yt5_A Metal-response element- 67.2 0.95 3.3E-05 35.2 -0.4 50 470-519 5-62 (66)
90 2ysm_A Myeloid/lymphoid or mix 66.7 1.2 4E-05 38.1 -0.0 48 469-516 5-55 (111)
91 1wep_A PHF8; structural genomi 66.3 3.3 0.00011 33.6 2.6 48 471-519 12-64 (79)
92 2puy_A PHD finger protein 21A; 66.2 0.68 2.3E-05 35.8 -1.5 49 470-521 4-55 (60)
93 2ri7_A Nucleosome-remodeling f 65.6 1.8 6E-05 39.5 0.9 48 470-518 7-59 (174)
94 2vpb_A Hpygo1, pygopus homolog 65.6 3.9 0.00013 32.5 2.8 47 470-516 7-64 (65)
95 2kgg_A Histone demethylase jar 64.3 1.9 6.4E-05 32.5 0.7 44 473-516 4-52 (52)
96 1xwh_A Autoimmune regulator; P 63.4 1 3.5E-05 35.5 -0.9 46 470-518 7-55 (66)
97 1fp0_A KAP-1 corepressor; PHD 63.3 3.1 0.0001 35.3 1.9 47 469-518 23-72 (88)
98 2yql_A PHD finger protein 21A; 63.0 0.76 2.6E-05 35.1 -1.7 46 469-517 7-55 (56)
99 1wem_A Death associated transc 62.6 3.2 0.00011 33.3 1.8 47 471-519 16-71 (76)
100 2e6r_A Jumonji/ARID domain-con 57.5 0.96 3.3E-05 38.1 -2.2 49 469-518 14-66 (92)
101 3v43_A Histone acetyltransfera 57.0 6 0.0002 34.0 2.7 46 471-516 5-62 (112)
102 3v43_A Histone acetyltransfera 56.9 2.3 8E-05 36.6 0.1 45 473-517 63-111 (112)
103 3shb_A E3 ubiquitin-protein li 55.6 1.4 4.8E-05 36.2 -1.5 45 473-518 28-77 (77)
104 1weo_A Cellulose synthase, cat 55.5 11 0.00037 32.4 3.9 50 471-520 16-69 (93)
105 3ask_A E3 ubiquitin-protein li 54.6 2.2 7.4E-05 41.9 -0.6 46 472-518 175-225 (226)
106 1wew_A DNA-binding family prot 52.9 4.4 0.00015 32.9 1.1 49 470-519 15-73 (78)
107 2e6s_A E3 ubiquitin-protein li 52.4 2.1 7E-05 35.2 -0.9 45 472-517 27-76 (77)
108 2ro1_A Transcription intermedi 51.1 2.2 7.7E-05 40.0 -1.1 46 471-519 2-50 (189)
109 2l43_A N-teminal domain from h 50.0 7.1 0.00024 32.6 1.9 53 469-521 23-78 (88)
110 1weu_A Inhibitor of growth fam 49.5 8.6 0.0003 32.6 2.4 45 471-519 36-86 (91)
111 2lbm_A Transcriptional regulat 47.7 14 0.00047 33.8 3.6 46 469-518 61-117 (142)
112 1wfk_A Zinc finger, FYVE domai 47.5 2.3 7.8E-05 35.6 -1.5 55 469-523 7-68 (88)
113 2kwj_A Zinc finger protein DPF 46.9 5.1 0.00017 34.6 0.6 44 472-515 2-58 (114)
114 1wee_A PHD finger family prote 46.1 3 0.0001 33.2 -0.9 47 471-518 16-66 (72)
115 1wen_A Inhibitor of growth fam 45.4 9 0.00031 30.8 1.8 45 470-519 15-66 (71)
116 2cs3_A Protein C14ORF4, MY039 44.9 29 0.00099 29.5 4.8 37 470-507 14-52 (93)
117 3mpx_A FYVE, rhogef and PH dom 44.7 4.6 0.00016 41.1 0.0 51 470-520 374-431 (434)
118 3asl_A E3 ubiquitin-protein li 44.4 3.4 0.00011 33.1 -0.9 45 473-518 20-69 (70)
119 4gne_A Histone-lysine N-methyl 43.3 17 0.00058 31.6 3.3 48 469-522 13-66 (107)
120 3ql9_A Transcriptional regulat 41.8 26 0.00089 31.5 4.4 46 469-518 55-111 (129)
121 3t7l_A Zinc finger FYVE domain 41.2 18 0.00062 30.0 3.1 53 470-522 19-77 (90)
122 1iml_A CRIP, cysteine rich int 40.8 11 0.00037 29.3 1.6 41 471-516 27-68 (76)
123 2cu8_A Cysteine-rich protein 2 38.5 16 0.00053 28.4 2.2 40 471-521 9-48 (76)
124 2ysm_A Myeloid/lymphoid or mix 38.3 5.3 0.00018 34.0 -0.6 45 473-518 56-104 (111)
125 1z2q_A LM5-1; membrane protein 38.0 27 0.00092 28.5 3.6 53 469-521 19-79 (84)
126 3o70_A PHD finger protein 13; 37.4 5.8 0.0002 31.6 -0.5 46 470-517 18-66 (68)
127 2kwj_A Zinc finger protein DPF 37.2 2.8 9.5E-05 36.3 -2.6 49 473-521 60-111 (114)
128 3i2d_A E3 SUMO-protein ligase 37.2 25 0.00085 36.8 4.1 49 471-521 249-300 (371)
129 3kqi_A GRC5, PHD finger protei 36.7 11 0.00038 30.2 1.1 48 471-518 9-61 (75)
130 1joc_A EEA1, early endosomal a 35.6 21 0.00072 31.4 2.8 35 470-504 68-103 (125)
131 2yw8_A RUN and FYVE domain-con 33.6 25 0.00084 28.6 2.7 53 469-521 17-75 (82)
132 2dj7_A Actin-binding LIM prote 33.2 21 0.00073 28.3 2.2 39 471-520 15-53 (80)
133 4fo9_A E3 SUMO-protein ligase 32.7 33 0.0011 35.7 4.1 49 471-521 215-266 (360)
134 1dvp_A HRS, hepatocyte growth 32.4 19 0.00063 34.1 2.0 34 471-504 161-195 (220)
135 1y02_A CARP2, FYVE-ring finger 32.3 6.9 0.00024 34.8 -0.9 47 471-518 19-66 (120)
136 1x4u_A Zinc finger, FYVE domai 32.1 31 0.0011 28.1 3.1 35 469-503 12-47 (84)
137 3zyq_A Hepatocyte growth facto 31.6 21 0.00071 34.2 2.2 50 471-520 164-221 (226)
138 2ku3_A Bromodomain-containing 31.5 41 0.0014 26.9 3.6 50 469-518 14-66 (71)
139 2o35_A Hypothetical protein DU 30.0 19 0.00066 31.5 1.5 12 496-507 43-54 (105)
140 3fyb_A Protein of unknown func 29.8 20 0.00067 31.4 1.5 12 496-507 42-53 (104)
141 2vnf_A ING 4, P29ING4, inhibit 29.4 8.8 0.0003 29.7 -0.6 42 471-517 10-58 (60)
142 1vfy_A Phosphatidylinositol-3- 29.0 33 0.0011 27.2 2.7 32 472-503 12-44 (73)
143 3c6w_A P28ING5, inhibitor of g 28.4 9.8 0.00033 29.5 -0.5 42 471-517 9-57 (59)
144 1zbd_B Rabphilin-3A; G protein 28.1 26 0.00087 31.5 2.1 33 470-502 54-88 (134)
145 1zfo_A LAsp-1; LIM domain, zin 27.8 12 0.0004 25.4 -0.2 28 472-501 4-31 (31)
146 3kv4_A PHD finger protein 8; e 27.6 16 0.00054 39.0 0.7 48 472-519 5-57 (447)
147 2co8_A NEDD9 interacting prote 27.0 47 0.0016 26.3 3.2 40 471-521 15-54 (82)
148 1wyh_A SLIM 2, skeletal muscle 26.7 43 0.0015 25.3 2.9 40 472-521 6-45 (72)
149 2rsd_A E3 SUMO-protein ligase 26.3 6.4 0.00022 31.0 -2.0 44 472-517 11-64 (68)
150 1x4k_A Skeletal muscle LIM-pro 25.5 39 0.0013 25.5 2.5 40 472-521 6-45 (72)
151 1x63_A Skeletal muscle LIM-pro 25.4 47 0.0016 25.8 3.0 40 472-521 16-55 (82)
152 3kv5_D JMJC domain-containing 25.1 20 0.00067 38.5 0.9 47 472-518 37-88 (488)
153 1x4l_A Skeletal muscle LIM-pro 25.0 37 0.0013 25.9 2.2 39 472-520 6-46 (72)
154 3f6q_B LIM and senescent cell 24.3 40 0.0014 25.2 2.3 42 471-522 11-52 (72)
155 1x61_A Thyroid receptor intera 23.6 59 0.002 24.6 3.2 10 473-482 7-16 (72)
156 1g47_A Pinch protein; LIM doma 23.3 57 0.002 24.9 3.0 41 471-521 11-51 (77)
157 2l3k_A Rhombotin-2, linker, LI 23.2 32 0.0011 29.3 1.7 46 469-518 34-79 (123)
158 1x68_A FHL5 protein; four-and- 23.2 44 0.0015 25.8 2.3 39 472-520 6-46 (76)
159 3a1b_A DNA (cytosine-5)-methyl 22.9 56 0.0019 30.4 3.4 35 469-507 77-114 (159)
160 2zet_C Melanophilin; complex, 22.8 33 0.0011 31.5 1.7 47 470-517 67-116 (153)
161 1z60_A TFIIH basal transcripti 21.7 31 0.001 27.2 1.2 42 472-515 16-58 (59)
162 2d8y_A Eplin protein; LIM doma 21.7 58 0.002 26.1 2.9 39 472-521 16-54 (91)
163 2cor_A Pinch protein; LIM doma 21.6 54 0.0018 25.7 2.6 39 471-521 15-53 (79)
164 1x62_A C-terminal LIM domain p 21.4 47 0.0016 25.9 2.3 38 471-520 15-52 (79)
165 1a7i_A QCRP2 (LIM1); LIM domai 21.3 28 0.00097 27.2 0.9 38 472-520 8-45 (81)
166 2d8x_A Protein pinch; LIM doma 20.9 65 0.0022 24.3 2.9 37 472-520 6-42 (70)
167 2dar_A PDZ and LIM domain prot 20.2 50 0.0017 26.4 2.2 39 471-521 25-63 (90)
168 2l4z_A DNA endonuclease RBBP8, 20.1 45 0.0015 28.8 2.0 39 471-520 61-99 (123)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=128.19 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=66.4
Q ss_pred CCCCCChHHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 442 VSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 442 ~s~PApksvIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...++.+..|+.||...+...... ......|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||..+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGA--VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSS--SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccc--cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 456789999999999887654422 3456789999999999999999999999999999999996 8899999998865
Q ss_pred C
Q 043444 522 G 522 (534)
Q Consensus 522 ~ 522 (534)
.
T Consensus 90 ~ 90 (91)
T 2l0b_A 90 P 90 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=121.59 Aligned_cols=70 Identities=34% Similarity=0.873 Sum_probs=58.1
Q ss_pred HHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 449 svIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
..++.||...+..... ..+..+|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||+++...
T Consensus 4 ~~i~~lp~~~~~~~~~---~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNH---QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSC---SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccc---cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 4567788877754332 2456789999999999888999999999999999999996 88999999988654
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=2.3e-14 Score=115.11 Aligned_cols=63 Identities=32% Similarity=0.836 Sum_probs=53.6
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCCCCCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSEIP 532 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~sssE~P 532 (534)
....+|+||++.|...+.++.|+|+|.||..||.+|++. +.+||+||..+.........++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~ 75 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATNPPGLT 75 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCCCSSCT
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCCCCCCC
Confidence 446789999999998888889999999999999999996 789999999998776555544443
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=111.70 Aligned_cols=55 Identities=42% Similarity=0.979 Sum_probs=48.8
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT 524 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds 524 (534)
.....|+||++.|..++.++.+||+|.||..||.+|++. +.+||+||..+.....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence 446789999999998888999999999999999999996 7899999999876543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6e-14 Score=111.61 Aligned_cols=55 Identities=36% Similarity=0.856 Sum_probs=48.7
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT 524 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds 524 (534)
.....|+||++.|..+..+++|||+|.||..||.+|++. +.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccccc
Confidence 446789999999998888899999999999999999996 7899999999876543
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=3.4e-14 Score=106.78 Aligned_cols=50 Identities=50% Similarity=1.156 Sum_probs=45.6
Q ss_pred CCccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
+..+|+||++.|..++.+..++ |+|.||..||.+|++. +.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 4578999999999988889998 9999999999999996 889999999874
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=3.2e-13 Score=115.65 Aligned_cols=59 Identities=20% Similarity=0.452 Sum_probs=46.2
Q ss_pred CccccccccccccCC---------------eeEEecCCCccchhHHHHHHhc----cCCCCcccccccccCCCCCCCC
Q 043444 471 PDQCYICLAEYEEGD---------------RIRLLPCHHEYHMSCVDKWLKE----IHGVCPLCRRDVRQGATESSNS 529 (534)
Q Consensus 471 ~~eC~ICLEeFeegd---------------~vrvLPCgH~FHk~CId~WLkk----~~~TCPLCR~eV~~~dse~sss 529 (534)
+.+|+||++.|.... .++.++|+|.||..||..||.. .+.+||+||..+.......+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 468999999997543 3457899999999999999952 3678999999987765554433
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=3.2e-13 Score=101.22 Aligned_cols=50 Identities=34% Similarity=0.702 Sum_probs=43.4
Q ss_pred CCccccccccccccC-CeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 470 EPDQCYICLAEYEEG-DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 470 e~~eC~ICLEeFeeg-d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...+|+||++.|..+ +.++.++|+|.||..||.+|++. ..+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 457899999999654 45778899999999999999996 789999999875
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=110.69 Aligned_cols=52 Identities=33% Similarity=0.811 Sum_probs=41.8
Q ss_pred CCcccccccccccc-----------CCeeEEec-CCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEE-----------GDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFee-----------gd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
++..|+||++.|.. ++.++.++ |+|.||..||.+||+. +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 45668888888753 45566666 9999999999999996 78999999987543
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.8e-13 Score=102.43 Aligned_cols=52 Identities=29% Similarity=0.644 Sum_probs=44.3
Q ss_pred CCCccccccccccccC----CeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEG----DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeeg----d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
.+...|+||++.|... ..++.++|||.||..||.+|++. +.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4467899999999753 34578999999999999999996 8899999998754
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=3.5e-13 Score=117.28 Aligned_cols=65 Identities=26% Similarity=0.546 Sum_probs=48.7
Q ss_pred CceeccCCCCcCCCCCCccccccccccccC---------------CeeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444 455 PIKSHKKGDKAEGGVEPDQCYICLAEYEEG---------------DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519 (534)
Q Consensus 455 Pv~~~k~~~~~~~~~e~~eC~ICLEeFeeg---------------d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV 519 (534)
.++.+..........+++.|+||++.|... ..++.++|+|.||..||.+||+. +.+||+||.++
T Consensus 21 ~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 99 (106)
T 3dpl_R 21 EVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 99 (106)
T ss_dssp EEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred eEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence 333333333333345578899999999754 13677899999999999999996 89999999986
Q ss_pred c
Q 043444 520 R 520 (534)
Q Consensus 520 ~ 520 (534)
.
T Consensus 100 ~ 100 (106)
T 3dpl_R 100 E 100 (106)
T ss_dssp C
T ss_pred e
Confidence 4
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=8.2e-13 Score=103.58 Aligned_cols=54 Identities=30% Similarity=0.678 Sum_probs=45.7
Q ss_pred CCCcccccccccccc----CCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFee----gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
.+..+|+||++.|.. ++.++.++|||.||..||.+|++. +.+||+||..+...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhh
Confidence 346789999999875 245588999999999999999996 789999999987553
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=100.06 Aligned_cols=52 Identities=29% Similarity=0.632 Sum_probs=44.6
Q ss_pred CCccccccccccccC----CeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEG----DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeeg----d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
+..+|+||++.|... +.++.++|||.||..||.+|++. +.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcc
Confidence 356899999999753 45578999999999999999996 88999999988764
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=102.09 Aligned_cols=54 Identities=31% Similarity=0.901 Sum_probs=46.0
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS 527 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s 527 (534)
.+...|+||++.|.. +.+||+|.||..||.+|++. +..||+||..+...+..+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCcccc
Confidence 346789999999875 78999999999999999995 8999999999987654443
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.8e-12 Score=101.57 Aligned_cols=54 Identities=30% Similarity=0.600 Sum_probs=45.7
Q ss_pred CCCccccccccccccCCe-eEEecCCCccchhHHHHHHhcc--CCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEI--HGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~--~~TCPLCR~eV~~~ 522 (534)
.+..+|+||++.|...+. ++.++|||.||..||..|++.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 446789999999987664 7889999999999999999962 37899999988654
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=98.75 Aligned_cols=52 Identities=23% Similarity=0.449 Sum_probs=43.9
Q ss_pred CCCccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT 524 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds 524 (534)
.+...|+||++.|.. .+.+ +|||.||..||..|++. +..||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccc
Confidence 446789999999875 4455 99999999999999996 8899999999876543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.1e-12 Score=101.46 Aligned_cols=51 Identities=27% Similarity=0.561 Sum_probs=44.0
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
.+...|+||++.|.. .+.+||||.||..||..|++. +..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 446789999999864 578899999999999999996 789999999987553
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.21 E-value=5.8e-13 Score=118.27 Aligned_cols=68 Identities=26% Similarity=0.586 Sum_probs=9.8
Q ss_pred hcCCceeccCCCCcCCCCCCccccccccccccC-------------C--eeEEecCCCccchhHHHHHHhccCCCCcccc
Q 043444 452 DSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEG-------------D--RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR 516 (534)
Q Consensus 452 dsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeeg-------------d--~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR 516 (534)
..+.++.+..+........++.|+||++.|... + .+..++|+|.||..||.+||+. +.+||+||
T Consensus 29 ~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr 107 (117)
T 4a0k_B 29 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDN 107 (117)
T ss_dssp CSEEEEEEEEEEEEEECCCC------------------------------------------------------------
T ss_pred CceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCC
Confidence 444444444444444455678999999999752 2 2334589999999999999996 89999999
Q ss_pred cccc
Q 043444 517 RDVR 520 (534)
Q Consensus 517 ~eV~ 520 (534)
.++.
T Consensus 108 ~~~~ 111 (117)
T 4a0k_B 108 REWE 111 (117)
T ss_dssp ----
T ss_pred Ceee
Confidence 9864
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=102.09 Aligned_cols=54 Identities=30% Similarity=0.775 Sum_probs=45.0
Q ss_pred CCCccccccccccccCCeeEEecCC-----CccchhHHHHHHhcc-CCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKEI-HGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCg-----H~FHk~CId~WLkk~-~~TCPLCR~eV~~~d 523 (534)
.+...|.||+++|.+++.+ ++||+ |.||..||++||... ..+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4467899999999877765 69996 999999999999962 258999999987554
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=6.4e-12 Score=98.10 Aligned_cols=50 Identities=30% Similarity=0.854 Sum_probs=43.0
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
....|+||++.|.. .++.+||||.||..||.+|++. +.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 35689999999863 4578999999999999999996 78999999988643
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=97.45 Aligned_cols=51 Identities=27% Similarity=0.599 Sum_probs=42.9
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. ++.++|||.||..||..|++. ....||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 446789999999874 667899999999999999972 356899999988654
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=99.09 Aligned_cols=48 Identities=21% Similarity=0.578 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
.....|+||++.|.. +++++|||.||..||..|++. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 346789999999965 567999999999999999996 889999999885
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=97.73 Aligned_cols=53 Identities=23% Similarity=0.534 Sum_probs=43.5
Q ss_pred CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhcc-CCCCcccccccccCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEI-HGVCPLCRRDVRQGAT 524 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~-~~TCPLCR~eV~~~ds 524 (534)
.+...|+||++.|.. ++.++ |||.||..||..|++.. ...||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 446789999999975 56799 99999999999999852 2689999998765543
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=96.40 Aligned_cols=51 Identities=18% Similarity=0.421 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. .+.++|||.||..||.+|++.....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 446789999999875 345899999999999999964467899999988654
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.15 E-value=9.5e-12 Score=110.89 Aligned_cols=47 Identities=34% Similarity=0.896 Sum_probs=41.6
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
+..|+||++.|.. ++.+||||.||..||..|+.. +.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 4579999999974 678999999999999999996 8899999998854
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.13 E-value=3.5e-11 Score=96.46 Aligned_cols=51 Identities=24% Similarity=0.446 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. ++.++|||.||..||..||+..+.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 346789999999875 567899999999999999985478899999988654
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=4.8e-11 Score=92.91 Aligned_cols=52 Identities=27% Similarity=0.553 Sum_probs=42.3
Q ss_pred Ccccccccc-ccccCCe-eEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLA-EYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLE-eFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
+..|+||++ .|..... ...++|||.||..||.+|+.+....||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 567999999 7765443 356799999999999999876467899999988654
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=7.8e-11 Score=94.44 Aligned_cols=51 Identities=29% Similarity=0.594 Sum_probs=42.9
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc-----CCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI-----HGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~-----~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. .+.++|||.||..||..|++.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 346789999999875 4578999999999999999862 56899999988754
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=102.66 Aligned_cols=49 Identities=31% Similarity=0.812 Sum_probs=41.6
Q ss_pred CccccccccccccCCeeEE-ecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRL-LPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrv-LPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|+||++.|.. ++. ++|||.||..||..|++.....||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 5679999999974 556 899999999999999997337999999998653
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=5.1e-11 Score=102.55 Aligned_cols=52 Identities=29% Similarity=0.643 Sum_probs=44.8
Q ss_pred CCccccccccccccC----CeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEG----DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeeg----d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
+...|+||++.|... +.++.++|||.||..||.+||+. +.+||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 467899999999753 45588999999999999999996 78999999988654
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.7e-11 Score=90.48 Aligned_cols=44 Identities=27% Similarity=0.596 Sum_probs=37.6
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLC 515 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLC 515 (534)
.+...|+||++.|.. ++.++|||.||..||.+|++. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456789999999875 667899999999999999984 35689998
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=93.57 Aligned_cols=51 Identities=27% Similarity=0.546 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc-----cCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-----IHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-----~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. ++.++|||.||..||..|++. ....||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 346789999999875 456899999999999999985 267899999998764
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.05 E-value=2.6e-11 Score=96.80 Aligned_cols=51 Identities=29% Similarity=0.494 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc------CCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI------HGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~------~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. ++.+||||.||..||..|++.. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 446789999999875 4568999999999999999852 56899999998754
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=101.65 Aligned_cols=48 Identities=25% Similarity=0.478 Sum_probs=41.8
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|+||++.|.. ++.+||||.||..||..|+......||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4679999999984 67789999999999999998545589999999866
No 35
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=96.31 Aligned_cols=54 Identities=22% Similarity=0.506 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccC--CCCcccccccccCCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH--GVCPLCRRDVRQGATE 525 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~--~TCPLCR~eV~~~dse 525 (534)
....+|+||++.|..++. ...|+|.||..||.+||+. + .+||+||.+......+
T Consensus 13 ~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTT-CSSCCCTTTCSCCCSCCCC
T ss_pred CCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHh-cCCCCCCCCcCcCCCCCCC
Confidence 345789999999987543 3379999999999999996 5 7899999988755433
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.4e-10 Score=87.55 Aligned_cols=44 Identities=25% Similarity=0.798 Sum_probs=36.8
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLC 515 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLC 515 (534)
.+...|+||++.|.. .+.++|||.||..||.+|++. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 446789999999975 456899999999999999653 46789998
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=94.83 Aligned_cols=49 Identities=24% Similarity=0.571 Sum_probs=41.5
Q ss_pred CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhc-cCCCCcccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE-IHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk-~~~TCPLCR~eV~ 520 (534)
.+...|+||++.|.. ++.+| |||.||..||..|+.. ....||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456789999999874 67899 9999999999999975 2368999999873
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=97.32 Aligned_cols=47 Identities=28% Similarity=0.677 Sum_probs=41.0
Q ss_pred CccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|+||++.|.. .+.+ +|||.||..||..|+.. +..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 4679999999975 4555 89999999999999996 7899999998865
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=1.3e-10 Score=99.88 Aligned_cols=53 Identities=30% Similarity=0.694 Sum_probs=45.1
Q ss_pred CCCcccccccccccc----CCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFee----gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. +...+.++|||.||..||.+||+. +.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChh
Confidence 346789999999875 234578899999999999999996 88999999998765
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.5e-10 Score=98.66 Aligned_cols=49 Identities=20% Similarity=0.639 Sum_probs=42.0
Q ss_pred CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
+...|+||++.|.. .+.+ +|||.||..||..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 35789999999874 4555 99999999999999996 78999999988754
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.99 E-value=2e-10 Score=104.73 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=41.4
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
+...|+||++.|.. .+..++|||.||..||..||+..+..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 35689999999975 333449999999999999999657889999998853
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=7.6e-11 Score=101.35 Aligned_cols=50 Identities=32% Similarity=0.672 Sum_probs=42.7
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
.++..|+||++.|.. ++.++|||.||..||..|+......||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345789999999874 67889999999999999998656789999998864
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.94 E-value=3.7e-10 Score=102.89 Aligned_cols=49 Identities=24% Similarity=0.467 Sum_probs=42.1
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|+||++.|.. ++.+||||.||..||..|+......||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4679999999875 567999999999999999996445899999998765
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=5.7e-10 Score=96.80 Aligned_cols=51 Identities=24% Similarity=0.521 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. .+.++|||.||..||..|++.....||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 446789999999875 567899999999999999997445999999988653
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=3.1e-10 Score=96.19 Aligned_cols=49 Identities=31% Similarity=0.613 Sum_probs=40.4
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhcc--CCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI--HGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~--~~TCPLCR~eV~~~ 522 (534)
...|+||++.|.. ++.+||||.||..||..|+... ...||+||..+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3579999999864 4568999999999999999852 14899999988754
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.89 E-value=7.5e-10 Score=95.25 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=42.7
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
...|+||++.|.. ++.++|||.||..||..|+......||+||..+...+
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4679999999874 5668999999999999999964678999999987643
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.87 E-value=1.8e-09 Score=89.62 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=44.0
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.+ +++++|||.|++.||..||.. +.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChH
Confidence 346789999999986 778999999999999999996 89999999987653
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.87 E-value=1.9e-09 Score=88.88 Aligned_cols=57 Identities=23% Similarity=0.592 Sum_probs=44.5
Q ss_pred CCCccccccccccccCCeeEEec--CCCccchhHHHHHHhccCCCCcccccccccCCCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP--CHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATES 526 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP--CgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~ 526 (534)
.++..|+||++.|...+. ..+| |||.||..||..|+......||+||..+....-..
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 456789999999865433 3444 99999999999998655678999999997765433
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.85 E-value=1.9e-09 Score=92.43 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=44.1
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.+ ++++||||.|++.||..||.. +.+||+||..+...
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChh
Confidence 446789999999986 778999999999999999995 88999999988653
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.81 E-value=3.3e-09 Score=90.64 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=43.9
Q ss_pred CCCccccccccccccCCeeEEecCC-CccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCH-HEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCg-H~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.+ +++++|| |.|++.||.+||.. +.+||+||..+...
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChh
Confidence 346789999999986 7789999 99999999999996 78999999988653
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=98.71 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
.+...|+||++.|.. ++.++|||.||..||.+|++.....||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 456789999999975 4678999999999999999864458999999864
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=3.5e-09 Score=101.42 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=42.9
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
....|+||++.|.+ ++++||||.||+.||..||.....+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 46789999999986 778999999999999999986445699999988643
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=3.6e-09 Score=110.60 Aligned_cols=49 Identities=27% Similarity=0.738 Sum_probs=42.6
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
..+|+||++.+.. ++.+||||.||..||..|+......||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4689999999864 678999999999999999984378999999988654
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=3e-09 Score=83.90 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=40.0
Q ss_pred CCccccccccccccCCeeEEe--cCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL--PCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL--PCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
++.+|+||++.+.. ++.+ ||||. |+..|+..|++. +..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 35679999998764 4555 99999 899999999985 7899999998853
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.6e-09 Score=81.78 Aligned_cols=48 Identities=31% Similarity=0.609 Sum_probs=40.1
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
.+...|+||++.|.. ++.|||||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 346789999999975 568999999999999884 568999999987654
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=2.4e-09 Score=92.67 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=39.0
Q ss_pred CccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|+||++.|.. ++.+ +|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 5679999999974 5566 9999999999999987 689999998854
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.67 E-value=4e-09 Score=85.01 Aligned_cols=44 Identities=25% Similarity=0.620 Sum_probs=37.9
Q ss_pred CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 4679999998764 678899999 999999998 5799999988643
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.67 E-value=7.9e-09 Score=81.23 Aligned_cols=48 Identities=17% Similarity=0.510 Sum_probs=39.6
Q ss_pred CCccccccccccccCCeeEEe--cCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL--PCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL--PCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
....|.||++.+.. ...+ ||||. |+..|+..|++. ...||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 35689999998653 3455 99998 999999999986 6899999998853
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=84.99 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=39.4
Q ss_pred CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhcc-----CCCCcc--cccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEI-----HGVCPL--CRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~-----~~TCPL--CR~e 518 (534)
.....|+||++.|.+ +++++ |||.|++.||..||... ..+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 346789999999985 67886 99999999999999862 258999 9865
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.63 E-value=1.6e-08 Score=92.36 Aligned_cols=51 Identities=24% Similarity=0.521 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|+||++.|.. ++.++|||.||..||.+|++.....||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 456789999999875 567899999999999999986445999999988654
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.57 E-value=1.4e-08 Score=105.01 Aligned_cols=56 Identities=27% Similarity=0.711 Sum_probs=42.7
Q ss_pred CCCccccccccccccCCeeE-----EecCCCccchhHHHHHHhccC----------CCCcccccccccCCC
Q 043444 469 VEPDQCYICLAEYEEGDRIR-----LLPCHHEYHMSCVDKWLKEIH----------GVCPLCRRDVRQGAT 524 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vr-----vLPCgH~FHk~CId~WLkk~~----------~TCPLCR~eV~~~ds 524 (534)
....+|+||++.+.++..+. ..+|+|.||..||.+||+... ..||+||+++....+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 34678999999998733321 236999999999999998621 469999999876543
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.53 E-value=3.7e-08 Score=93.22 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=42.3
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
+...|+||++.|.+ ++++||||.|++.||..||.....+||+||..+...
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 35789999999985 778899999999999999986334799999988643
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.47 E-value=8.5e-08 Score=75.55 Aligned_cols=49 Identities=27% Similarity=0.657 Sum_probs=38.3
Q ss_pred CCCccccccccccccCCeeEEecCC--C---ccchhHHHHHHhc-cCCCCcccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCH--H---EYHMSCVDKWLKE-IHGVCPLCRRDVR 520 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCg--H---~FHk~CId~WLkk-~~~TCPLCR~eV~ 520 (534)
.+...|.||+++. ++.. ++||. | .||..||.+|+.. .+.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3467899999973 3333 68965 4 9999999999985 3578999999874
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=8.1e-08 Score=80.09 Aligned_cols=49 Identities=20% Similarity=0.567 Sum_probs=39.2
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhc----c---CCCCcc--cccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----I---HGVCPL--CRRD 518 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----~---~~TCPL--CR~e 518 (534)
+..+|+||++.|...+.+...+|||.||..||..|+.. . ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999976555444579999999999999974 1 246999 9987
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=5.6e-08 Score=78.20 Aligned_cols=44 Identities=25% Similarity=0.625 Sum_probs=36.4
Q ss_pred CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|+||++.+.. ++.+||||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 4579999999764 667899999 99999953 36899999988654
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.6e-07 Score=75.09 Aligned_cols=46 Identities=30% Similarity=0.717 Sum_probs=38.4
Q ss_pred CCCccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
.+...|.||++.+.. ++.|||||. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 446789999998754 788999999 99999983 47899999988654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.32 E-value=1.2e-07 Score=77.73 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=37.3
Q ss_pred CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 3579999998764 788999999 999999876 3899999988654
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.21 E-value=5.2e-07 Score=90.24 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=41.5
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcc--cccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPL--CRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPL--CR~eV~~~ 522 (534)
.....|+||++.|.. .++.+.|||.|++.||..|++. ....||+ ||..+...
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 446789999999974 4444589999999999999985 2357999 99977543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.21 E-value=2.8e-07 Score=94.73 Aligned_cols=45 Identities=24% Similarity=0.699 Sum_probs=38.5
Q ss_pred CCccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 35789999999864 778899999 999999988 5799999988643
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.21 E-value=5.6e-07 Score=70.89 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=41.4
Q ss_pred ccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444 472 DQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d 523 (534)
..|+||++.|.+ .+++ +|||.|.+.||.+||++ +.+||+++.++...+
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhh
Confidence 569999999985 5677 89999999999999996 678999999886543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.88 E-value=7.6e-06 Score=71.37 Aligned_cols=46 Identities=26% Similarity=0.557 Sum_probs=39.5
Q ss_pred ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
|.+|--.|.. ..+.+||+|.||..|+..|.++..++||.|+.+|..
T Consensus 4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 8888877664 678999999999999999998667899999998854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.64 E-value=2.2e-05 Score=76.86 Aligned_cols=52 Identities=23% Similarity=0.513 Sum_probs=40.3
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhcc-CCCCcccccccccCCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI-HGVCPLCRRDVRQGAT 524 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~-~~TCPLCR~eV~~~ds 524 (534)
..+|.||.+....|. +.-.|+|.||..|+.+|++.. ...||.|+...+....
T Consensus 180 i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 567999999988652 222399999999999999862 3489999997765543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.22 E-value=0.01 Score=51.39 Aligned_cols=57 Identities=25% Similarity=0.593 Sum_probs=44.1
Q ss_pred CccccccccccccCCeeEEecCC-CccchhHHHHHHhccCCCCcccccccccCCCCCCCCCCCC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCH-HEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSEIPS 533 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCg-H~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~sssE~Ps 533 (534)
...|-.|.-++.. ++.|. |.+|..|+...|.. ...||+|+++|+........+-+|.
T Consensus 28 ~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~~~~PSAPP 85 (99)
T 2ko5_A 28 PQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLRPSAAPTAPP 85 (99)
T ss_dssp CCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSCTTTSCCCCC
T ss_pred cccChhhccccCC-----eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcceecCcCCCCCC
Confidence 4579999977542 34454 99999999999985 8889999999998876665555553
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.91 E-value=0.043 Score=45.66 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=26.2
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHH
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKW 504 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~W 504 (534)
+..|.||++.|........+.|+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999987543333345899999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.03 E-value=0.095 Score=41.98 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=33.7
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccC---CCCccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH---GVCPLCRRDV 519 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~---~TCPLCR~eV 519 (534)
.....|.||.+. ++.+..-.|...||..|+.+.|.... -.||.|....
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999753 33322224999999999999988632 3699997643
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.64 E-value=0.25 Score=38.44 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=35.3
Q ss_pred CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhc----cCCCCcccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKE----IHGVCPLCRRD 518 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk----~~~TCPLCR~e 518 (534)
+...|+||...+.++..++.. .|..-||..|+.--... ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456799999998765555554 49999999998753321 25679999764
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.87 E-value=0.39 Score=38.47 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=35.3
Q ss_pred CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhc---cCCCCccccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKE---IHGVCPLCRRDVRQ 521 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk---~~~TCPLCR~eV~~ 521 (534)
+...|.||..... ++.++.. .|...||..|+..-+.. ..-.||.|+..+.+
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3456999988753 3344443 39999999999875543 24569999876643
No 78
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=76.54 E-value=0.49 Score=40.82 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=35.6
Q ss_pred CccccccccccccCCeeEEe--cCCCccchhHHHHHH---h------ccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL--PCHHEYHMSCVDKWL---K------EIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL--PCgH~FHk~CId~WL---k------k~~~TCPLCR~eV~ 520 (534)
...|.||...|.+...++.. .|...||..|+.-=- + .....||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 35699999998776666555 489999999985321 0 02567999987543
No 79
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.54 E-value=0.59 Score=39.06 Aligned_cols=56 Identities=20% Similarity=0.481 Sum_probs=37.3
Q ss_pred CccccccccccccC-CeeEEe-cCCCccchhHHHHHHhc-------cCCCCcccccccccCCCCC
Q 043444 471 PDQCYICLAEYEEG-DRIRLL-PCHHEYHMSCVDKWLKE-------IHGVCPLCRRDVRQGATES 526 (534)
Q Consensus 471 ~~eC~ICLEeFeeg-d~vrvL-PCgH~FHk~CId~WLkk-------~~~TCPLCR~eV~~~dse~ 526 (534)
...|.||...-... ..++.. .|...||..|+.+-|.. ..-.||.|+..........
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~ 80 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKN 80 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcccc
Confidence 45799999764322 233333 39999999999986642 2346999987766554333
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=75.23 E-value=0.86 Score=43.13 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=34.5
Q ss_pred ccccccccccccCCe---eEEec-CCCccchhHHHHH------Hhc----cCCCCccccccc
Q 043444 472 DQCYICLAEYEEGDR---IRLLP-CHHEYHMSCVDKW------LKE----IHGVCPLCRRDV 519 (534)
Q Consensus 472 ~eC~ICLEeFeegd~---vrvLP-CgH~FHk~CId~W------Lkk----~~~TCPLCR~eV 519 (534)
.-|+||...|.+++. ++..- |...||..|+.-= +.. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 459999999988763 55544 9999999998431 110 157899998754
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.69 E-value=1.1 Score=34.83 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=32.0
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc---cCCCCcccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE---IHGVCPLCRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk---~~~TCPLCR~e 518 (534)
..+..|.||... ++.+..-.|...||..|+.+-|.+ ..-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345679999873 333322348999999999986653 23459999653
No 82
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.52 E-value=2 Score=36.62 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=23.1
Q ss_pred CCCccccccccccccCCeeEEec---CCCccchhHHHHH
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP---CHHEYHMSCVDKW 504 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP---CgH~FHk~CId~W 504 (534)
..+..|.||-.. ..+ .++| |+-.||..|+.+-
T Consensus 13 ~~D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-ccc---ceeccccccccccHhhcccc
Confidence 346789998743 322 2444 8899999999996
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=72.76 E-value=0.77 Score=43.39 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=32.2
Q ss_pred CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhcc---CCCCccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI---HGVCPLCRRDV 519 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~---~~TCPLCR~eV 519 (534)
.+..|.||... | .+... .|...||..|+.+.|... .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999843 2 23333 389999999998877642 24599998643
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=72.71 E-value=0.6 Score=36.43 Aligned_cols=50 Identities=26% Similarity=0.599 Sum_probs=33.2
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc---CCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---~~TCPLCR~eV~~ 521 (534)
..+..|.||... ++.+..-.|...||..|+.+-|... .-.||.|+....+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 345679999852 3322223489999999999766541 2359999775543
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=72.35 E-value=1 Score=33.49 Aligned_cols=45 Identities=27% Similarity=0.647 Sum_probs=29.3
Q ss_pred cccccccccccCCeeEEecCCCccchhHHHHHHhcc---CCCCccccc
Q 043444 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRR 517 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---~~TCPLCR~ 517 (534)
.|.||...-..++.+.--.|...||..|+.+=|.+. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764333333223499999999998755531 234999964
No 86
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=72.18 E-value=2.3 Score=49.33 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCeeEEecCC-CccchhHHHHHHhccCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCH-HEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCg-H~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
-+...|||-++-+.+ ++++|.| +.|-+.+|.+||.. +.+||+=|.++...
T Consensus 889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcc
Confidence 346789999999886 7889997 58999999999996 88999999888643
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.10 E-value=0.92 Score=38.54 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=30.7
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLCRR 517 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLCR~ 517 (534)
...| ||......+..+..=.|.-.||..|+..=+.. ....||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4567 89877655443323349999999999764332 1357999974
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=71.01 E-value=0.74 Score=42.56 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=32.0
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc---cCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE---IHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk---~~~TCPLCR~eV 519 (534)
+..|.||... |+.+..=.|...||..|+.+.|.. ..-.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4679999853 443222249999999999887764 224599998643
No 89
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=67.23 E-value=0.95 Score=35.22 Aligned_cols=50 Identities=24% Similarity=0.572 Sum_probs=33.3
Q ss_pred CCccccccccccccC-CeeEEe-cCCCccchhHHHHHHhc------cCCCCccccccc
Q 043444 470 EPDQCYICLAEYEEG-DRIRLL-PCHHEYHMSCVDKWLKE------IHGVCPLCRRDV 519 (534)
Q Consensus 470 e~~eC~ICLEeFeeg-d~vrvL-PCgH~FHk~CId~WLkk------~~~TCPLCR~eV 519 (534)
.+..|.||....... ..++.. .|...||..|+.+-|.. ..-.||.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456799999875432 233333 49999999999875432 234699997643
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.70 E-value=1.2 Score=38.09 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc---cCCCCcccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE---IHGVCPLCR 516 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk---~~~TCPLCR 516 (534)
..+..|.||...=+..+.+.--.|+..||..|+..++.. ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 346789999876322222333459999999999987652 233466664
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.32 E-value=3.3 Score=33.58 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=32.6
Q ss_pred CccccccccccccCCeeEEec-CCCccchhHHHHHHhc----cCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE----IHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk----~~~TCPLCR~eV 519 (534)
..-| ||...+..+..++..- |..-||..|+.--... ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3446 9999886555555543 9999999999632221 257799998654
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=66.25 E-value=0.68 Score=35.76 Aligned_cols=49 Identities=29% Similarity=0.654 Sum_probs=33.4
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhc---cCCCCccccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE---IHGVCPLCRRDVRQ 521 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk---~~~TCPLCR~eV~~ 521 (534)
.+..|.||... ++.+..-.|...||..|+.+-|.. ..-.||.|.....+
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 35679999874 333333349999999999976654 12359999775544
No 93
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=65.61 E-value=1.8 Score=39.46 Aligned_cols=48 Identities=27% Similarity=0.447 Sum_probs=32.9
Q ss_pred CCccccccccccccCCeeEEec-CCCccchhHHHHHHh----ccCCCCcccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK----EIHGVCPLCRRD 518 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLk----k~~~TCPLCR~e 518 (534)
...-| ||...+..+..++..- |...||..|+.--.. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9998876555555543 999999999953221 125679999764
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.60 E-value=3.9 Score=32.48 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCccccccccccccCCeeEEe--cCCCccchhHHHHHHhc---------cCCCCcccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL--PCHHEYHMSCVDKWLKE---------IHGVCPLCR 516 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL--PCgH~FHk~CId~WLkk---------~~~TCPLCR 516 (534)
....|.+|...|.+++.++.. .|.-.||..|+.-=-.. ....||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 356799999999877766665 59999999998532210 145688885
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=64.31 E-value=1.9 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=30.8
Q ss_pred cccccccccccCCeeEEe--cCCCccchhHHHHHHh---ccCCCCcccc
Q 043444 473 QCYICLAEYEEGDRIRLL--PCHHEYHMSCVDKWLK---EIHGVCPLCR 516 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvL--PCgH~FHk~CId~WLk---k~~~TCPLCR 516 (534)
.|.||...+.+++.++.- .|..-||..|+.--.. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 488999998766655554 3888999999763221 1367899985
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=63.35 E-value=1 Score=35.49 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=31.6
Q ss_pred CCccccccccccccCCeeEEecCCCccchhHHHHHHhcc---CCCCcccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRRD 518 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---~~TCPLCR~e 518 (534)
.+..|.||... ++.+..-.|...||..|+.+-|... .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46779999964 3333223499999999999766541 2359999654
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.26 E-value=3.1 Score=35.29 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=32.4
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc---CCCCcccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---~~TCPLCR~e 518 (534)
..+..|.||... ++.+..-.|.-.||..|+.+=|... .-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 446689999964 3322222488999999998877642 2359999764
No 98
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.95 E-value=0.76 Score=35.05 Aligned_cols=46 Identities=33% Similarity=0.721 Sum_probs=30.9
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc---CCCCccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRR 517 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---~~TCPLCR~ 517 (534)
..+..|.||... ++.+..-.|...||..|+.+-|... .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999974 3333333499999999999766541 234888853
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.60 E-value=3.2 Score=33.28 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=30.7
Q ss_pred CccccccccccccCCeeEEe-cCCCccchhHHHHHHh--------ccCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLK--------EIHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLk--------k~~~TCPLCR~eV 519 (534)
..-| ||...+.. ..++.. .|..-||..|+.--.. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3456 89988753 334443 4999999999853211 1267899997643
No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.54 E-value=0.96 Score=38.12 Aligned_cols=49 Identities=27% Similarity=0.579 Sum_probs=32.9
Q ss_pred CCCccccccccccccCCeeEEe-cCCCccchhHHHHHHhcc---CCCCcccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI---HGVCPLCRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~---~~TCPLCR~e 518 (534)
.+...|.||...-..+ .++.. .|...||..|+.+=|... .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456799999764332 33333 499999999998655431 2349999764
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=57.00 E-value=6 Score=33.99 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=27.9
Q ss_pred Ccccccccccc-----ccCCeeEE-ecCCCccchhHHHH------HHhccCCCCcccc
Q 043444 471 PDQCYICLAEY-----EEGDRIRL-LPCHHEYHMSCVDK------WLKEIHGVCPLCR 516 (534)
Q Consensus 471 ~~eC~ICLEeF-----eegd~vrv-LPCgH~FHk~CId~------WLkk~~~TCPLCR 516 (534)
...|.+|+..= ..+++++. -.|+..||..||.. .+.+..-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35699998752 12223333 34999999999953 2333344577774
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=56.92 E-value=2.3 Score=36.56 Aligned_cols=45 Identities=27% Similarity=0.707 Sum_probs=29.7
Q ss_pred cccccccccccCCeeEEe-cCCCccchhHHHHHHhcc---CCCCccccc
Q 043444 473 QCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI---HGVCPLCRR 517 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~---~~TCPLCR~ 517 (534)
.|.||...-...+.+..- .|...||..|+.+-|.+. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888642222333333 499999999998766642 235999975
No 103
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=55.58 E-value=1.4 Score=36.24 Aligned_cols=45 Identities=27% Similarity=0.702 Sum_probs=27.6
Q ss_pred cccccccccccCCeeEEe-cCCCccchhHHHHHHhcc---C-CCCcccccc
Q 043444 473 QCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI---H-GVCPLCRRD 518 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~---~-~TCPLCR~e 518 (534)
.|.||...-..+ .++.- .|...||..|+.+-|... . -.||.|+.+
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 466666543222 22222 388999999999877652 2 369999753
No 104
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.53 E-value=11 Score=32.44 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=37.9
Q ss_pred CccccccccccccC---CeeE-EecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEG---DRIR-LLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeeg---d~vr-vLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.||-+++... +..+ ..-|+--.|+.|..-=.+..+..||.|+..+-
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45799999986532 2222 23488889999999888888899999988774
No 105
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=54.59 E-value=2.2 Score=41.89 Aligned_cols=46 Identities=28% Similarity=0.697 Sum_probs=26.7
Q ss_pred ccccccccccccCCeeEEe-cCCCccchhHHHHHHhcc----CCCCcccccc
Q 043444 472 DQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI----HGVCPLCRRD 518 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~----~~TCPLCR~e 518 (534)
..|.||...=.. ..+... .|...||..|+.+=|... .=.||.|+.+
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 358888764222 233333 499999999999766642 2359999753
No 106
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.91 E-value=4.4 Score=32.86 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCccccccccccccCCeeEEe--cCCCccchhHHHHHHhc--------cCCCCccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL--PCHHEYHMSCVDKWLKE--------IHGVCPLCRRDV 519 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL--PCgH~FHk~CId~WLkk--------~~~TCPLCR~eV 519 (534)
....| ||-.....+..+..= .|...||..|+.---.. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34567 899875444333323 49999999998532110 256799997643
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.40 E-value=2.1 Score=35.15 Aligned_cols=45 Identities=27% Similarity=0.633 Sum_probs=29.5
Q ss_pred ccccccccccccCCeeEEe-cCCCccchhHHHHHHhcc----CCCCccccc
Q 043444 472 DQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI----HGVCPLCRR 517 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~----~~TCPLCR~ 517 (534)
..|.||...-.. ..++.- .|...||..|+.+=|... .=.||.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368888864222 233333 499999999999766542 235999865
No 108
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.12 E-value=2.2 Score=39.98 Aligned_cols=46 Identities=24% Similarity=0.519 Sum_probs=31.5
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhc---cCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE---IHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk---~~~TCPLCR~eV 519 (534)
+..|.+|... |+.+..-.|...||..|+.+=|.. ..-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3569999854 443333348899999999876653 233599997653
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.95 E-value=7.1 Score=32.56 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCcccccccccc-ccCCeeEEe-cCCCccchhHHHHHHhc-cCCCCccccccccc
Q 043444 469 VEPDQCYICLAEY-EEGDRIRLL-PCHHEYHMSCVDKWLKE-IHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeF-eegd~vrvL-PCgH~FHk~CId~WLkk-~~~TCPLCR~eV~~ 521 (534)
.++..|.||...- ...+.++.. .|.-.||..|+..-+.- ..-.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3467899999753 122233333 38899999999864321 23459999765443
No 110
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.47 E-value=8.6 Score=32.61 Aligned_cols=45 Identities=29% Similarity=0.675 Sum_probs=27.8
Q ss_pred CccccccccccccCCeeEEec--CC-CccchhHHHHHHhc---cCCCCccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLP--CH-HEYHMSCVDKWLKE---IHGVCPLCRRDV 519 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLP--Cg-H~FHk~CId~WLkk---~~~TCPLCR~eV 519 (534)
..-| ||..... ++.+..=. |. ..||..||. |.. ..-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456 9998653 33222223 55 679999997 443 245699997654
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=47.74 E-value=14 Score=33.79 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=31.9
Q ss_pred CCCccccccccccccCCeeEEe-cCCCccchhHHHHHHhc----------cCCCCcccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKE----------IHGVCPLCRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk----------~~~TCPLCR~e 518 (534)
..+..|.||.+. |+ +... .|-..||..||.+-|.. ..-.||+|+..
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 346789999964 33 3333 49999999999986631 23359999753
No 112
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.54 E-value=2.3 Score=35.59 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=37.2
Q ss_pred CCCccccccccccccCCe-eEEecCCCccchhHHHHHHh------ccCCCCcccccccccCC
Q 043444 469 VEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLK------EIHGVCPLCRRDVRQGA 523 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLk------k~~~TCPLCR~eV~~~d 523 (534)
.+...|.+|...|..-.. -..-.||++||..|....+. +...+|-.|-..+....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence 345689999999975432 22335999999999765321 12467999977766543
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.89 E-value=5.1 Score=34.60 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=27.1
Q ss_pred cccccccccccc-------CCeeEEecCCCccchhHHHHHH------hccCCCCccc
Q 043444 472 DQCYICLAEYEE-------GDRIRLLPCHHEYHMSCVDKWL------KEIHGVCPLC 515 (534)
Q Consensus 472 ~eC~ICLEeFee-------gd~vrvLPCgH~FHk~CId~WL------kk~~~TCPLC 515 (534)
..|.||+..-.. ++.+.--.|+..||..|+..++ .+..-.||.|
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 359999875311 1223333599999999998653 2223457766
No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.08 E-value=3 Score=33.20 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=31.9
Q ss_pred CccccccccccccCCeeEEe-cCCCccchhHHHHHHh---ccCCCCcccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLK---EIHGVCPLCRRD 518 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLk---k~~~TCPLCR~e 518 (534)
...| ||...+..++.++.. .|..-||..|+.---. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4568 798887666555554 4999999999865321 124679999753
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=45.35 E-value=9 Score=30.81 Aligned_cols=45 Identities=29% Similarity=0.690 Sum_probs=28.3
Q ss_pred CCccccccccccccCCeeEEe-c--CC-CccchhHHHHHHhc---cCCCCccccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-P--CH-HEYHMSCVDKWLKE---IHGVCPLCRRDV 519 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-P--Cg-H~FHk~CId~WLkk---~~~TCPLCR~eV 519 (534)
+..-| ||..... ++ ++.. . |. ..||..||. |.. ..-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34457 8988643 33 3322 2 55 689999998 443 234699997654
No 116
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=44.89 E-value=29 Score=29.49 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=29.5
Q ss_pred CCccccccccccccCCeeEEec--CCCccchhHHHHHHhc
Q 043444 470 EPDQCYICLAEYEEGDRIRLLP--CHHEYHMSCVDKWLKE 507 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvLP--CgH~FHk~CId~WLkk 507 (534)
....|.+|.+-+++.. .+..| =.|.||..|-...+++
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 4567999999988643 44555 4799999999999986
No 117
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=44.73 E-value=4.6 Score=41.11 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCccccccccccccCC-eeEEecCCCccchhHHHHHHhc------cCCCCcccccccc
Q 043444 470 EPDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKE------IHGVCPLCRRDVR 520 (534)
Q Consensus 470 e~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk------~~~TCPLCR~eV~ 520 (534)
....|.+|...|..-. ....-.||+.||..|...++.- ..++|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 3567999999987432 2223459999999999876521 2456888865553
No 118
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=44.36 E-value=3.4 Score=33.15 Aligned_cols=45 Identities=29% Similarity=0.736 Sum_probs=28.2
Q ss_pred cccccccccccCCeeEEe-cCCCccchhHHHHHHhcc----CCCCcccccc
Q 043444 473 QCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI----HGVCPLCRRD 518 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~----~~TCPLCR~e 518 (534)
.|.||...-.. ..++.- .|...||..|+.+=|.+. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 46677653222 233333 389999999999766542 2359999753
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=43.25 E-value=17 Score=31.60 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=31.5
Q ss_pred CCCccccccccccccCCeeEEec---CCCccchhHHHHHHhc---cCCCCcccccccccC
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP---CHHEYHMSCVDKWLKE---IHGVCPLCRRDVRQG 522 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP---CgH~FHk~CId~WLkk---~~~TCPLCR~eV~~~ 522 (534)
..+..|.+|.. +..++.-- |-..||..|+. |.. ..-.||.|+-.+...
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 44677999983 23344443 88999999998 554 123488887655544
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=41.79 E-value=26 Score=31.50 Aligned_cols=46 Identities=22% Similarity=0.514 Sum_probs=30.9
Q ss_pred CCCccccccccccccCCeeEEe-cCCCccchhHHHHH-----Hhcc-----CCCCcccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKW-----LKEI-----HGVCPLCRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~W-----Lkk~-----~~TCPLCR~e 518 (534)
..+..|.||.+. ..+..- .|-..||..||.+- |.+. .=.|++|+..
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345679999954 333333 38899999999986 3221 2459999654
No 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.17 E-value=18 Score=30.02 Aligned_cols=53 Identities=17% Similarity=0.448 Sum_probs=35.7
Q ss_pred CCccccccccccccCCe-eEEecCCCccchhHHHHHH-----hccCCCCcccccccccC
Q 043444 470 EPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWL-----KEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WL-----kk~~~TCPLCR~eV~~~ 522 (534)
+...|.+|...|..-.. ...-.||++||..|...++ .+...+|-.|-..+...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKA 77 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHH
Confidence 35679999999975432 2233599999999987653 22246688886655433
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.80 E-value=11 Score=29.31 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=19.5
Q ss_pred CccccccccccccCCeeEEecCCCccch-hHHHHHHhccCCCCcccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHM-SCVDKWLKEIHGVCPLCR 516 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk-~CId~WLkk~~~TCPLCR 516 (534)
-..|..|...+..+.- ...=+..||. .|..+-+. ..|--|.
T Consensus 27 CF~C~~C~~~L~~~~~--~~~~g~~yC~~~cy~~~f~---~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGH--AEHEGKPYCNHPCYSAMFG---PKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTTTE--EEETTEEEETTTHHHHHSS---CCCSSCC
T ss_pred CCCccccCccCCCCce--ECcCCeEeeCHHHHHHHhC---ccCCCcC
Confidence 3556666666554321 1223455665 46544322 3455554
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.51 E-value=16 Score=28.38 Aligned_cols=40 Identities=15% Similarity=0.443 Sum_probs=28.9
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|+.|-+.+..++.+. .-+..||..| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC---------CCCCCCCCccCC
Confidence 356999999888666543 4578889877 568888777653
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=38.26 E-value=5.3 Score=33.95 Aligned_cols=45 Identities=24% Similarity=0.512 Sum_probs=28.4
Q ss_pred cccccccccccCCeeEEe-cCCCccchhHHHHHHhc---cCCCCcccccc
Q 043444 473 QCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKE---IHGVCPLCRRD 518 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk---~~~TCPLCR~e 518 (534)
.|.||...-.+ +.+..- .|...||..|+.+-|.. ..-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46666655332 223333 49999999999876654 23459999654
No 125
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=38.04 E-value=27 Score=28.51 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCCccccccccccccCCeeE-EecCCCccchhHHHHHHh-------ccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDKWLK-------EIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~WLk-------k~~~TCPLCR~eV~~ 521 (534)
.+...|.+|...|..-..-. .-.||++||..|....+. +....|-.|-..+..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 44668999999997543222 234999999999766421 123568888665543
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=37.44 E-value=5.8 Score=31.60 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=30.6
Q ss_pred CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhc--cCCCCccccc
Q 043444 470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKE--IHGVCPLCRR 517 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk--~~~TCPLCR~ 517 (534)
+..-| ||...+. ++.++.. .|...||..|+.---.. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34567 9998765 4444443 49999999998643211 2467999964
No 127
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=37.22 E-value=2.8 Score=36.27 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=31.5
Q ss_pred cccccccccccCCeeEEecCCCccchhHHHHHHhcc---CCCCccccccccc
Q 043444 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRRDVRQ 521 (534)
Q Consensus 473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---~~TCPLCR~eV~~ 521 (534)
.|.||...-..++.+.--.|...||..|+.+=|... .-.||.|+..+..
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 488887653333333333499999999999755541 2349999765543
No 128
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=37.21 E-value=25 Score=36.77 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=31.5
Q ss_pred CccccccccccccCCeeEEecCCCc--cchhHHHHHHhc-cCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE--YHMSCVDKWLKE-IHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~--FHk~CId~WLkk-~~~TCPLCR~eV~~ 521 (534)
...|+|-+..|.. .++-..|.|. |-..=+.....+ ..-.||+|...+..
T Consensus 249 SL~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 3579998877653 5677789998 444334333332 23469999887643
No 129
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=36.69 E-value=11 Score=30.15 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=32.1
Q ss_pred CccccccccccccCCeeEEe-cCCCccchhHHHHHHhc----cCCCCcccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKE----IHGVCPLCRRD 518 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk----~~~TCPLCR~e 518 (534)
.....||...+..+..++.. .|.--||..|+.---.. ....||.|+..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34455999877655555554 39999999999643221 24679999764
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.63 E-value=21 Score=31.42 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=25.1
Q ss_pred CCccccccccccccCCeeE-EecCCCccchhHHHHH
Q 043444 470 EPDQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDKW 504 (534)
Q Consensus 470 e~~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~W 504 (534)
+...|.+|...|..-..-. .-.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3467999999997543222 3349999999996553
No 131
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.59 E-value=25 Score=28.62 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=34.0
Q ss_pred CCCccccccccccccCCeeE-EecCCCccchhHHHHHHh-----ccCCCCccccccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDKWLK-----EIHGVCPLCRRDVRQ 521 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~WLk-----k~~~TCPLCR~eV~~ 521 (534)
.+...|.+|...|.....-. .-.||.+||..|....+. +....|-.|-..|..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 34567999999997543222 234999999999765421 113457777655543
No 132
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.17 E-value=21 Score=28.34 Aligned_cols=39 Identities=26% Similarity=0.612 Sum_probs=28.6
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|.-|-+.+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCcC
Confidence 4569999998876665443 477899877 67888877664
No 133
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.69 E-value=33 Score=35.68 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=32.2
Q ss_pred CccccccccccccCCeeEEecCCCc--cchhHHHHHHhc-cCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHE--YHMSCVDKWLKE-IHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~--FHk~CId~WLkk-~~~TCPLCR~eV~~ 521 (534)
...|+|-+.-|.. .++-..|.|. |-..=+.....+ ..-.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 3569998877653 5677789998 555444444332 23469999887753
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.41 E-value=19 Score=34.10 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=24.9
Q ss_pred CccccccccccccCCeeE-EecCCCccchhHHHHH
Q 043444 471 PDQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDKW 504 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~W 504 (534)
...|.+|...|..-..-. .-.||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 478999999997543222 3349999999997653
No 135
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.30 E-value=6.9 Score=34.76 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=31.5
Q ss_pred CccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccc
Q 043444 471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518 (534)
Q Consensus 471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~e 518 (534)
...|.+|...|..-. +-..-.||.+||..|....... .++|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHH
Confidence 457999999987532 2334459999999998776653 6788888543
No 136
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.07 E-value=31 Score=28.09 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=24.9
Q ss_pred CCCccccccccccccCCe-eEEecCCCccchhHHHH
Q 043444 469 VEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDK 503 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~ 503 (534)
.+...|.+|...|..-.. -..-.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345679999999975332 22334999999999654
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.62 E-value=21 Score=34.19 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=33.6
Q ss_pred CccccccccccccCCeeE-EecCCCccchhHHHHHHh-------ccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDKWLK-------EIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~WLk-------k~~~TCPLCR~eV~ 520 (534)
...|.+|...|..-..-. .-.||+.||..|-..++. +..+.|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 468999999997543222 334999999999775432 12356888865554
No 138
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.49 E-value=41 Score=26.95 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=32.1
Q ss_pred CCCcccccccccc-ccCCeeEEe-cCCCccchhHHHHHHh-ccCCCCcccccc
Q 043444 469 VEPDQCYICLAEY-EEGDRIRLL-PCHHEYHMSCVDKWLK-EIHGVCPLCRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeF-eegd~vrvL-PCgH~FHk~CId~WLk-k~~~TCPLCR~e 518 (534)
.....|.||...- ..++.++.. .|.-.||..|+..-+. +..-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4467799998763 223334333 3999999999986321 123459999754
No 139
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.02 E-value=19 Score=31.49 Aligned_cols=12 Identities=25% Similarity=1.057 Sum_probs=11.2
Q ss_pred cchhHHHHHHhc
Q 043444 496 YHMSCVDKWLKE 507 (534)
Q Consensus 496 FHk~CId~WLkk 507 (534)
||+.|+.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 140
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.75 E-value=20 Score=31.39 Aligned_cols=12 Identities=42% Similarity=1.099 Sum_probs=11.1
Q ss_pred cchhHHHHHHhc
Q 043444 496 YHMSCVDKWLKE 507 (534)
Q Consensus 496 FHk~CId~WLkk 507 (534)
||+.|+.+|++.
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999984
No 141
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.43 E-value=8.8 Score=29.72 Aligned_cols=42 Identities=29% Similarity=0.679 Sum_probs=26.0
Q ss_pred CccccccccccccCCeeEEe-c--CC-CccchhHHHHHHhc---cCCCCccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL-P--CH-HEYHMSCVDKWLKE---IHGVCPLCRR 517 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL-P--Cg-H~FHk~CId~WLkk---~~~TCPLCR~ 517 (534)
..-| ||..... + .++.. . |. ..||..|+. |.. ..-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3445 9987642 3 33332 2 54 679999998 543 2346999964
No 142
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.04 E-value=33 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=23.3
Q ss_pred ccccccccccccCCeeE-EecCCCccchhHHHH
Q 043444 472 DQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDK 503 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~ 503 (534)
..|.+|...|..-..-. .-.||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 57999999997533222 234999999999754
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=28.44 E-value=9.8 Score=29.48 Aligned_cols=42 Identities=31% Similarity=0.694 Sum_probs=26.5
Q ss_pred CccccccccccccCCeeEEe-c--CC-CccchhHHHHHHhc---cCCCCccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLL-P--CH-HEYHMSCVDKWLKE---IHGVCPLCRR 517 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvL-P--Cg-H~FHk~CId~WLkk---~~~TCPLCR~ 517 (534)
..-| ||..... + .++.- . |. ..||..|+. |.. ..-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3446 9988642 3 33332 3 55 689999998 443 2346999965
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.15 E-value=26 Score=31.50 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCccccccccccc-cCC-eeEEecCCCccchhHHH
Q 043444 470 EPDQCYICLAEYE-EGD-RIRLLPCHHEYHMSCVD 502 (534)
Q Consensus 470 e~~eC~ICLEeFe-egd-~vrvLPCgH~FHk~CId 502 (534)
....|.+|...|. ... .....-|.|.+|..|=.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3578999999984 323 33344599999998843
No 145
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=27.79 E-value=12 Score=25.43 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=20.5
Q ss_pred ccccccccccccCCeeEEecCCCccchhHH
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCV 501 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CI 501 (534)
..|+.|-..+-..+.+. .-|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 46999998876655433 35789999984
No 146
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=27.57 E-value=16 Score=38.97 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=32.9
Q ss_pred ccccccccccccCCeeEEec-CCCccchhHHHHHHh---c-cCCCCccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLK---E-IHGVCPLCRRDV 519 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLk---k-~~~TCPLCR~eV 519 (534)
..++||...+..+..++..- |.--||..|+.---. . ....||.|+...
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 45779998876555565554 999999999953111 1 246899997643
No 147
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.97 E-value=47 Score=26.30 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=28.3
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|..|-+.+...+.+. .-+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C---------F~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC---------FRCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT---------CBCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc---------CEEcCCCCCcCC
Confidence 457999999887655543 4578899988 557777666544
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=43 Score=25.33 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=25.1
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..|..|-+.+..++.+ +..-+..||..| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc---------CeECCCCCcCCC
Confidence 4688888877754332 333577788766 457777666543
No 149
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=26.26 E-value=6.4 Score=31.03 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=27.3
Q ss_pred ccccccccccccCCeeEEec---CCCccchhHHHHH---Hhc----cCCCCccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLP---CHHEYHMSCVDKW---LKE----IHGVCPLCRR 517 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLP---CgH~FHk~CId~W---Lkk----~~~TCPLCR~ 517 (534)
..| ||-.....+ .++..- |...||..|+.-- ... .+..||.||.
T Consensus 11 v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 897665544 355542 8889999997321 010 1467999974
No 150
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.50 E-value=39 Score=25.53 Aligned_cols=40 Identities=20% Similarity=0.441 Sum_probs=25.3
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..|..|-+.+...+.++ ..-+..||..| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETC---------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTT---------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccC---------CcccccCCccCC
Confidence 45888888877654332 22567788766 557777666543
No 151
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.35 E-value=47 Score=25.81 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=28.5
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..|..|-+.+..++.+ +..-+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC---------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT---------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceE-EEECcccccccc---------CchhhCCCccCC
Confidence 4799999988766554 334578899877 567778776654
No 152
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=25.08 E-value=20 Score=38.52 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred ccccccccccccCCeeEEec-CCCccchhHHHHHHhc----cCCCCcccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE----IHGVCPLCRRD 518 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk----~~~TCPLCR~e 518 (534)
...+||...+..+..++..- |.--||..|+.---.. ....||.|+..
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34459998876555555554 9999999999542211 24679999753
No 153
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=37 Score=25.86 Aligned_cols=39 Identities=18% Similarity=0.414 Sum_probs=26.4
Q ss_pred cccccccccccc--CCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 472 DQCYICLAEYEE--GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 472 ~eC~ICLEeFee--gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
..|.-|-+.+.. .+.+ +..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCccc---------CEeccCCCcCC
Confidence 468888888775 2333 334678888877 56777877664
No 154
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.33 E-value=40 Score=25.17 Aligned_cols=42 Identities=24% Similarity=0.556 Sum_probs=29.6
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG 522 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ 522 (534)
...|.-|-..+..++.++. .=+..||..| ..|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~C---------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC---------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTT---------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCC---------CcccCCCCCCCCC
Confidence 3579999999887665432 3577899877 4677887776543
No 155
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.62 E-value=59 Score=24.56 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=5.0
Q ss_pred cccccccccc
Q 043444 473 QCYICLAEYE 482 (534)
Q Consensus 473 eC~ICLEeFe 482 (534)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 3555555444
No 156
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.33 E-value=57 Score=24.93 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=27.4
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|+-|-+.+...+.++. .-+..||..| ..|-.|...|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C---------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC---------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT---------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc---------CeECCCCCCCCC
Confidence 4579999988875454422 2577888876 567777766654
No 157
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.21 E-value=32 Score=29.33 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~e 518 (534)
..-..|..|-..+..++... +.=+..||..|..+.+.. .|..|...
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~---~~~~~~~~ 79 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKI---NGGSGGSG 79 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHH---HTCCCCCC
T ss_pred cccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhcc---ccCCCCCC
Confidence 34567888888886555443 335788999998888763 45555443
No 158
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.17 E-value=44 Score=25.82 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=26.1
Q ss_pred cccccccccccc--CCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 472 DQCYICLAEYEE--GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 472 ~eC~ICLEeFee--gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
..|+.|-+.+.. ... .+..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSEC---------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGG---------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCccc---------CChhhCCCcCC
Confidence 469999988774 222 2334678899877 56777766654
No 159
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=22.87 E-value=56 Score=30.43 Aligned_cols=35 Identities=20% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCCccccccccccccCCeeEEec---CCCccchhHHHHHHhc
Q 043444 469 VEPDQCYICLAEYEEGDRIRLLP---CHHEYHMSCVDKWLKE 507 (534)
Q Consensus 469 ~e~~eC~ICLEeFeegd~vrvLP---CgH~FHk~CId~WLkk 507 (534)
..+..|.||-+. ..+.... |...||..||..++..
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 346679999863 4454443 8899999999999864
No 160
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.81 E-value=33 Score=31.51 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCccccccccccc--cCCeeEEecCCCccchhHHHHHHhc-cCCCCccccc
Q 043444 470 EPDQCYICLAEYE--EGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRR 517 (534)
Q Consensus 470 e~~eC~ICLEeFe--egd~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~ 517 (534)
.+..|.+|...|. .+-......|.|.+|..|= .|+.. ..-.|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 3578999999875 3334444559999999996 24332 1123777754
No 161
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=21.75 E-value=31 Score=27.20 Aligned_cols=42 Identities=24% Similarity=0.733 Sum_probs=27.5
Q ss_pred ccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCccc
Q 043444 472 DQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLC 515 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLC 515 (534)
..|.-|...|.... ...-+ |++.|+.+| +.++-+.=..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35999999985322 12334 999999999 33333323469987
No 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=58 Score=26.06 Aligned_cols=39 Identities=23% Similarity=0.597 Sum_probs=24.1
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
..|.-|-+.+...+.+ ..-+..||..| ..|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C---------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISC---------FRCSYCNNKLSL 54 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTT---------CBCTTTCCBCCT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCC---------CeeCCCCCCCCC
Confidence 4688888777655432 34667777766 445566555543
No 163
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=54 Score=25.73 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=25.2
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|.-|-+.+. ++. +..-+..||..| +.|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDH---------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTT---------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCC---------CEeCCCCCccCC
Confidence 456888888776 332 233577788766 567777766653
No 164
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.45 E-value=47 Score=25.87 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=26.2
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|..|-+.+.. + .+..-+..||..| +.|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCc---------CeeCCCCCCCC
Confidence 3569999988774 2 2344678899877 45777776654
No 165
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.31 E-value=28 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.550 Sum_probs=23.4
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
..|..|-+.+..++.+ ..-+..||..| ..|-.|...|.
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~C---------F~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCC---------FLCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSS---------EECSSSCCEEC
T ss_pred CcCcCcCccccCceeE--EeCCccccccc---------CccCCCCCCCC
Confidence 4588888777655533 23566777765 45666666554
No 166
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.92 E-value=65 Score=24.27 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=20.4
Q ss_pred ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
..|..|-+.+.. +. +..-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~C---------F~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RV--IKAMNNSWHPEC---------FRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCS-CC--EEETTEEECTTT---------SBCSSSCCBCS
T ss_pred CcCccCCCEecc-eE--EEECcccccccC---------CEeCCCCCcCC
Confidence 457777766652 22 223456677655 45666655554
No 167
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.25 E-value=50 Score=26.39 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=27.6
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~ 521 (534)
...|+.|-+.+. ++. +..-+..||..| +.|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF--LVALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCE--EEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceE--EEECCccccccC---------CccCCCCCCCCC
Confidence 457999999884 333 334688899877 678888777653
No 168
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.07 E-value=45 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=29.1
Q ss_pred CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444 471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520 (534)
Q Consensus 471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~ 520 (534)
...|+-|-+.+.... ++..-+..||..| +.|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEcccc---------cCcCcCCCccc
Confidence 357999999887533 2334688999987 67889988875
Done!