Query 043445
Match_columns 486
No_of_seqs 170 out of 821
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 3E-137 6E-142 1090.3 22.9 444 36-485 42-755 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 2E-119 4E-124 990.0 29.2 406 43-458 2-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 7.9E-83 1.7E-87 705.9 30.5 403 39-455 8-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 4.4E-79 9.4E-84 673.1 23.6 391 49-453 3-624 (624)
5 TIGR00733 putative oligopeptid 99.9 6.4E-25 1.4E-29 240.3 18.6 324 49-409 3-435 (591)
6 COG1297 Predicted membrane pro 99.6 5.5E-14 1.2E-18 150.3 16.8 334 44-409 11-459 (624)
7 PF03606 DcuC: C4-dicarboxylat 39.1 43 0.00093 36.5 4.9 20 292-311 251-270 (465)
8 PF13829 DUF4191: Domain of un 37.2 28 0.00061 34.5 2.8 48 286-338 21-68 (224)
9 PF03169 OPT: OPT oligopeptide 36.3 44 0.00096 37.7 4.6 64 36-99 340-408 (624)
10 COG3086 RseC Positive regulato 32.3 64 0.0014 30.0 4.0 59 42-103 70-130 (150)
11 PTZ00207 hypothetical protein; 30.9 5.1E+02 0.011 29.4 11.7 22 290-311 238-259 (591)
12 COG0628 yhhT Predicted permeas 28.9 83 0.0018 32.7 4.9 151 245-409 160-312 (355)
13 KOG0425 Ubiquitin-protein liga 27.1 18 0.0004 33.8 -0.4 33 21-53 88-120 (171)
14 PF08173 YbgT_YccB: Membrane b 24.7 75 0.0016 21.4 2.3 17 55-71 6-22 (28)
15 TIGR02106 cyd_oper_ybgT cyd op 24.5 75 0.0016 21.7 2.3 18 55-72 6-23 (30)
16 PRK14749 hypothetical protein; 23.4 76 0.0017 21.6 2.1 17 55-71 6-22 (30)
17 PF11292 DUF3093: Protein of u 21.5 1.4E+02 0.003 27.7 4.2 30 292-324 9-38 (143)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-137 Score=1090.33 Aligned_cols=444 Identities=56% Similarity=1.042 Sum_probs=426.1
Q ss_pred CCCccccCCChhhhhhhhh---------------hhhhHHHHHHHHHHHhhccccccccchhhhHHHHHHHhhhhhhhhc
Q 043445 36 GNLYEEVNDNPIEEVRLTN---------------IVLGLTSCCLLAFGNQFFGYRQNHLYIGSVSAQILVLPIGKLMAAT 100 (486)
Q Consensus 36 ~~~~~~~~~sPy~eVRa~v---------------~~lG~~~~~~ga~~nq~F~~R~~~i~is~~~~ql~~yp~G~~~a~~ 100 (486)
|+++|+||||||||||++| |+||+++|+++|++||||++|+|+++++.+++|+++||+||+|||+
T Consensus 42 e~~~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~ 121 (761)
T KOG2262|consen 42 ENELEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKT 121 (761)
T ss_pred cccccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHh
Confidence 3335678899999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCceeecCCCCCCcchhHhhHHhhhccccchhhhHHH---------------------------HHHhhh
Q 043445 101 LPSEPIQVPLTPWSFSSNPGPFNLKEHVLITIFTSCGSGGVFAVGTY---------------------------IWWAGL 153 (486)
Q Consensus 101 lP~~~~~~~g~~~~~~LNPGpF~~KEh~litimA~~a~~~aya~~ii---------------------------yGlAGl 153 (486)
||+|++++ |++|+|+|||||||.|||++|||+||++++++|+++++ ||+||+
T Consensus 122 lP~~~~~~-~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl 200 (761)
T KOG2262|consen 122 LPTWKFGL-GGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGL 200 (761)
T ss_pred CCceeeec-CcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhh
Confidence 99999987 57899999999999999999999999999999999998 999999
Q ss_pred ccccccccCCcccCchhhHHHHHHh----------------------------------hhhhhhhhhHHHHhccCCcce
Q 043445 154 FRKYLVDSTYIWWPSNLVQVKLFRN----------------------------------LFPSISALSFVCWIWKDSVTE 199 (486)
Q Consensus 154 lR~flV~P~~miwPs~L~~~aL~~s----------------------------------ifp~Ls~~s~~cwi~p~n~~~ 199 (486)
+||+||||++|+||++|++++|||+ +||.||++||+||+.|+|.++
T Consensus 201 ~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~ 280 (761)
T KOG2262|consen 201 FRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITA 280 (761)
T ss_pred hHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHH
Confidence 9999999999999999999999999 999999999999999999999
Q ss_pred ehh----------------hchhhhcCCccchhHHHHHHHHHHHHH----------------------------------
Q 043445 200 QKL----------------ATVAGFLGSPLATLFFAIANILVGFFY---------------------------------- 229 (486)
Q Consensus 200 ~~i----------------~~i~~~~gspL~~P~~a~~n~~~G~~~---------------------------------- 229 (486)
+|| ++|++|+||||.+|||+.+|+++|+++
T Consensus 281 ~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~s 360 (761)
T KOG2262|consen 281 NQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNS 360 (761)
T ss_pred HHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCcE
Confidence 999 688889999999999999999999988
Q ss_pred ----------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhccccccccCCCCccchhhhh
Q 043445 230 ----------------------KLYLSVILAFIYGLGFAIQMPSISHVALFEGKTIWHMWRKTSSVKDQFGDVHTRIMNK 287 (486)
Q Consensus 230 ----------------------p~~~s~~~~~~y~~~fa~~~a~i~h~~L~~~k~i~~~~~~~~~~~~~~~D~h~rlm~~ 287 (486)
|+|+|+.|+++|+++||+++|+++|++|+|+||||+ +.|++ .++++|+|+|+|||
T Consensus 361 Ynvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~--~~~~~-~~k~~DiHtrlMkk 437 (761)
T KOG2262|consen 361 YNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQ--QTKKA-FNKKMDIHTRLMKK 437 (761)
T ss_pred eceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHH--HHHhc-cccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999 77776 57889999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHhheeeeeccCCCCCchHhHHHHHHHHHHHhhcceeeEEEecCCCccee--eeEEeeecCC
Q 043445 288 NYEAVPQLCFHTILIWTFGLSLYTCERFDKQFQLPWWGLLLACAMAFFFTLPVEVIQATTNLQTGLSI--ELVIGYIYPG 365 (486)
Q Consensus 288 ~Y~eVP~Wwy~~~lvvs~~~ai~~~~~~~~~~~lP~w~~ilAl~l~~i~~lp~g~i~A~T~~~~~lnv--qlI~G~l~PG 365 (486)
|||||+|||+++++++++++++.++.|+++.|+|||++++|++++++|++|.|+++|+||+++++|+ |+|.||++||
T Consensus 438 -YKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~Pg 516 (761)
T KOG2262|consen 438 -YKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPG 516 (761)
T ss_pred -hccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999996666999999999999999999999999999999999999 9999999999
Q ss_pred CcchhhHHHHHhHHhHHHHHHhhhhhhhhhccCCChhhHhhhhh------------------------------------
Q 043445 366 RPLANVAFKTYGYISMHKALGFIEDFKLGHYMKIQPKSMFIVQP------------------------------------ 409 (486)
Q Consensus 366 ~planm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~aQi------------------------------------ 409 (486)
||+|||.||+|||+++.||++|++|+|+|||||||||.||.+|+
T Consensus 517 rPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~~~s~~TCP 596 (761)
T KOG2262|consen 517 RPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTDQNSPWTCP 596 (761)
T ss_pred chHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 043445 410 -------------------------------------------------------------------------------- 409 (486)
Q Consensus 410 -------------------------------------------------------------------------------- 409 (486)
T Consensus 597 ~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny 676 (761)
T KOG2262|consen 597 SDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNY 676 (761)
T ss_pred CCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccch
Confidence
Q ss_pred ----hhhhHHHHHHhhhcHHHHhhhhHHHHhhhhHHHHHHHHHHHHhhhcCCCCCcccccCCCCCCCCCCCCCCCCCccC
Q 043445 410 ----TVGIFFNYYVYRRSQCWWARHTYILAAALDAGVALMGVILYFTLQCHNIFAPHWWDLAATDNCPLARCPTARGIKV 485 (486)
Q Consensus 410 ----~vg~~~~~~irr~~~~ww~kYnYvlsAaLd~G~ai~~liiff~~~~~~~~~~~WWGnn~~~~c~~~~~~~~~~~~~ 485 (486)
++|++|||++||||++||+|||||+|||||+|+++++++||||+|++++ ..+||||+..++|+..+|+.+++..+
T Consensus 677 ~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~-~~~WWGn~~~~~c~~a~cp~~~~v~~ 755 (761)
T KOG2262|consen 677 TSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGI-SLNWWGNTVSAGCDLAGCPTAKGVVV 755 (761)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCC-ccccccCcCCCCCCccCCCcCCeeec
Confidence 9999999999999999999999999999999999999999999999999 56799966657999999988776544
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.7e-119 Score=989.97 Aligned_cols=406 Identities=33% Similarity=0.664 Sum_probs=389.6
Q ss_pred CCChhhhhhhhh---------------hhhhHHHHHHHHHHHhhccccccccchhhhHHHHHHHhhhhhhhhcCCCcccc
Q 043445 43 NDNPIEEVRLTN---------------IVLGLTSCCLLAFGNQFFGYRQNHLYIGSVSAQILVLPIGKLMAATLPSEPIQ 107 (486)
Q Consensus 43 ~~sPy~eVRa~v---------------~~lG~~~~~~ga~~nq~F~~R~~~i~is~~~~ql~~yp~G~~~a~~lP~~~~~ 107 (486)
|||||||||++| |++|++++++++++||+|++|+|+++++++++||++||+||+|||++|+++++
T Consensus 2 ~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~ 81 (681)
T TIGR00727 2 FDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTIT 81 (681)
T ss_pred CCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 467777777777 89999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceeecCCCCCCcchhHhhHHhhhccccchhhhHHH---------------------------HHHhhhccccccc
Q 043445 108 VPLTPWSFSSNPGPFNLKEHVLITIFTSCGSGGVFAVGTY---------------------------IWWAGLFRKYLVD 160 (486)
Q Consensus 108 ~~g~~~~~~LNPGpF~~KEh~litimA~~a~~~aya~~ii---------------------------yGlAGllR~flV~ 160 (486)
++| ++|+|||||||+|||++|||||+++.+.+|+++++ ||+||++||++||
T Consensus 82 ~~g--~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~ 159 (681)
T TIGR00727 82 IRG--RKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVVY 159 (681)
T ss_pred ccc--ceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEec
Confidence 865 57999999999999999999999999899999987 8999999999999
Q ss_pred cCCcccCchhhHHHHHHh------------------------------------hhhhhhhhhHHHHhccCCcceehh--
Q 043445 161 STYIWWPSNLVQVKLFRN------------------------------------LFPSISALSFVCWIWKDSVTEQKL-- 202 (486)
Q Consensus 161 P~~miwPs~L~~~aL~~s------------------------------------ifp~Ls~~s~~cwi~p~n~~~~~i-- 202 (486)
|++|+||++|++++|+|+ +||+||+|||+|||+|+|++++++
T Consensus 160 p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g 239 (681)
T TIGR00727 160 PARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFG 239 (681)
T ss_pred cccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhc
Confidence 999999999999999999 999999999999999999999999
Q ss_pred ---------------hchhhhcCCccchhHHHHHHHHHHHHH--------------------------------------
Q 043445 203 ---------------ATVAGFLGSPLATLFFAIANILVGFFY-------------------------------------- 229 (486)
Q Consensus 203 ---------------~~i~~~~gspL~~P~~a~~n~~~G~~~-------------------------------------- 229 (486)
++|+++.+|||++|+|+++|+++|+++
T Consensus 240 ~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~vs 319 (681)
T TIGR00727 240 GSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNVT 319 (681)
T ss_pred cccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccccc
Confidence 467767789999999999999999987
Q ss_pred ------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhccccccccCCCCccchhhhhcCCC
Q 043445 230 ------------------KLYLSVILAFIYGLGFAIQMPSISHVALFEGKTIWHMWRKTSSVKDQFGDVHTRIMNKNYEA 291 (486)
Q Consensus 230 ------------------p~~~s~~~~~~y~~~fa~~~a~i~h~~L~~~k~i~~~~~~~~~~~~~~~D~h~rlm~~~Y~e 291 (486)
|+|++++++++|+++||+++|+++|++|+|||||++ ++|+ ++++|+|+|+||| |||
T Consensus 320 ~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~--~~~~---~~~~D~h~rlM~~-Y~e 393 (681)
T TIGR00727 320 EILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFN--ALKD---DDYPDPHSNLMKA-YKE 393 (681)
T ss_pred eeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHhc---CCCCChhHHHhhc-CCC
Confidence 999999999999999999999999999999999999 4443 5678999999999 999
Q ss_pred CChhHHHHHHHHHHHHhheeeeeccCCCCCchHhHHHHHHHHHHHhhcceeeEEEecCCCccee--eeEEeeecCCCcch
Q 043445 292 VPQLCFHTILIWTFGLSLYTCERFDKQFQLPWWGLLLACAMAFFFTLPVEVIQATTNLQTGLSI--ELVIGYIYPGRPLA 369 (486)
Q Consensus 292 VP~Wwy~~~lvvs~~~ai~~~~~~~~~~~lP~w~~ilAl~l~~i~~lp~g~i~A~T~~~~~lnv--qlI~G~l~PG~pla 369 (486)
||+|||++++++++++++++++.| ++++|||++++|+++++++++|.|+++|+||+++++|+ |+|+||+.||||+|
T Consensus 394 vP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~a 471 (681)
T TIGR00727 394 VPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRPLA 471 (681)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCchH
Confidence 999999999999999999999999 89999999999999999999999999999999999998 99999999999999
Q ss_pred hhHHHHHhHHhHHHHHHhhhhhhhhhccCCChhhHhhhhh----------------------------------------
Q 043445 370 NVAFKTYGYISMHKALGFIEDFKLGHYMKIQPKSMFIVQP---------------------------------------- 409 (486)
Q Consensus 370 nm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~aQi---------------------------------------- 409 (486)
||+||+||+++++||+++++|||+|||||||||+||.+|+
T Consensus 472 ~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~~~~~ftcp~~~~ 551 (681)
T TIGR00727 472 MMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTADQNAKYTCPNAVV 551 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCccCCCccc
Confidence 9999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------------------------------h
Q 043445 410 -------------------------------------------------------------------------------T 410 (486)
Q Consensus 410 -------------------------------------------------------------------------------~ 410 (486)
.
T Consensus 552 ~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~ 631 (681)
T TIGR00727 552 FFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKFYPRYLDWPMLFVGTGYIPPATPYNYMYYTS 631 (681)
T ss_pred eeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhCCccHHHhhccccCCcchhhHHHHHH
Confidence 8
Q ss_pred hhhHHHHHHhhhcHHHHhhhhHHHHhhhhHHHHHHHHHHHHhhhcCCC
Q 043445 411 VGIFFNYYVYRRSQCWWARHTYILAAALDAGVALMGVILYFTLQCHNI 458 (486)
Q Consensus 411 vg~~~~~~irr~~~~ww~kYnYvlsAaLd~G~ai~~liiff~~~~~~~ 458 (486)
+|++||+|+||||++||+||||++|||||+|+++++++|||+++++++
T Consensus 632 vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 632 VGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred HHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 999999999999999999999999999999999999999999999876
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=7.9e-83 Score=705.92 Aligned_cols=403 Identities=38% Similarity=0.651 Sum_probs=363.7
Q ss_pred ccccCCChhhhhhhhhhhhhHHHHHHHHHHHhhccccccccchhhhHHHHHHHhhhhhhhhcCCCcccccCCCCceeecC
Q 043445 39 YEEVNDNPIEEVRLTNIVLGLTSCCLLAFGNQFFGYRQNHLYIGSVSAQILVLPIGKLMAATLPSEPIQVPLTPWSFSSN 118 (486)
Q Consensus 39 ~~~~~~sPy~eVRa~v~~lG~~~~~~ga~~nq~F~~R~~~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~g~~~~~~LN 118 (486)
++||++.|-...|+. ++|++++++++++||||++|+|+++++++++|+++||+||+|+|++|+|+ ++||+||
T Consensus 8 ~~ddp~~~~~T~Ra~--~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~------~~~~~ln 79 (654)
T TIGR00728 8 PTDDPSLPVITFRAW--FLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE------GWKFSLN 79 (654)
T ss_pred CCCCCCCcchhHHHH--HHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc------ccceecC
Confidence 344446677889996 99999999999999999999999999999999999999999999999996 3688999
Q ss_pred CCCCCcchhHhhHHhhhccccchhhhHHH-----------------------------HHHhhhccccccccCCcccCch
Q 043445 119 PGPFNLKEHVLITIFTSCGSGGVFAVGTY-----------------------------IWWAGLFRKYLVDSTYIWWPSN 169 (486)
Q Consensus 119 PGpF~~KEh~litimA~~a~~~aya~~ii-----------------------------yGlAGllR~flV~P~~miwPs~ 169 (486)
|||||+|||+++|+|||++++.+++++++ +|+||++||++|+|++|+||+.
T Consensus 80 pgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l~~P~~ 159 (654)
T TIGR00728 80 PGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKLPWPSG 159 (654)
T ss_pred CCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccccCCcc
Confidence 99999999999999999998877777665 7889999999999999999999
Q ss_pred hhHHHHHHh-----------------------hhhhhhhhhHHHHhccCCcceehh------------hchhhhcCCccc
Q 043445 170 LVQVKLFRN-----------------------LFPSISALSFVCWIWKDSVTEQKL------------ATVAGFLGSPLA 214 (486)
Q Consensus 170 L~~~aL~~s-----------------------ifp~Ls~~s~~cwi~p~n~~~~~i------------~~i~~~~gspL~ 214 (486)
+++++|+|+ +|+.++.++|+||+.|++..++.. ++++++.|+|++
T Consensus 160 la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~~~~~~~fgglg~~~~~f~w~~s~~~~g~gli 239 (654)
T TIGR00728 160 LATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPGFTAFQTFGGLGSGSIGFGWQQSSAYIGSGLI 239 (654)
T ss_pred cHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccccceecHHhHhhcCCCcc
Confidence 999999995 577888899999999987654332 445567899999
Q ss_pred hhHHHHHHHHHHHHH----------------------------------------------------------hhhhhHH
Q 043445 215 TLFFAIANILVGFFY----------------------------------------------------------KLYLSVI 236 (486)
Q Consensus 215 ~P~~a~~n~~~G~~~----------------------------------------------------------p~~~s~~ 236 (486)
+|+++++|+++|.++ |+|++++
T Consensus 240 ~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~ 319 (654)
T TIGR00728 240 TPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSID 319 (654)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHH
Confidence 999999999999877 7777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhccccccccCCCCccchhhhh-------cCCCCChhHHHHHHHHHHHHhh
Q 043445 237 LAFIYGLGFAIQMPSISHVALFEGKTIWHMWRKTSSVKDQFGDVHTRIMNK-------NYEAVPQLCFHTILIWTFGLSL 309 (486)
Q Consensus 237 ~~~~y~~~fa~~~a~i~h~~L~~~k~i~~~~~~~~~~~~~~~D~h~rlm~~-------~Y~eVP~Wwy~~~lvvs~~~ai 309 (486)
+ |+++|+.++++++|+.++|+|++++++ |+. .++.+|.|.|+||+ +|||||+|||+.++++++++++
T Consensus 320 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~d~~~~~~~~vP~ww~~~~~~~~~~~~~ 393 (654)
T TIGR00728 320 F---YALLFNAFSDTIYSFALAHGRDIISAR--RDH-YKLGRDDHVRLLSRDEDLKVKNYKEVPAWWYLSLLLVSFGLGI 393 (654)
T ss_pred H---HHHHHHHHHHHHHHHHHHhhHHHHHHH--HHh-hhccCCCChHHHhhcccccccccCcCcHHHHHHHHHHHHHHHH
Confidence 7 899999999999999999999998843 332 23445666666655 0499999999999999999999
Q ss_pred eeeeeccCCCCCchHhHHHHHHHHHHHhhcceeeEEEecCCCccee--eeEEeeecCCCcchhhHHHHHhHHhHHHHHHh
Q 043445 310 YTCERFDKQFQLPWWGLLLACAMAFFFTLPVEVIQATTNLQTGLSI--ELVIGYIYPGRPLANVAFKTYGYISMHKALGF 387 (486)
Q Consensus 310 ~~~~~~~~~~~lP~w~~ilAl~l~~i~~lp~g~i~A~T~~~~~lnv--qlI~G~l~PG~planm~f~~~g~~~~~qa~~~ 387 (486)
++++.+++++++|||++++|++++++|++|.+.++|+||.+.++|+ |+++|++.||||++||+++++++++++||.|+
T Consensus 394 ~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~~~a~l~~~~~~~~~~~qA~~~ 473 (654)
T TIGR00728 394 VVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYILPGRPLANLAFKAYGFITAQQAGDF 473 (654)
T ss_pred HHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeecCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999986568999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred hhhhhhhhccCCChhhHhhhhh----------------------------------------------------------
Q 043445 388 IEDFKLGHYMKIQPKSMFIVQP---------------------------------------------------------- 409 (486)
Q Consensus 388 ~~DlKlGhY~kiPPR~~F~aQi---------------------------------------------------------- 409 (486)
+||||+|||+|+|||+||.+|+
T Consensus 474 ~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~~~~~~~~p~a~~~~~aa~~~g~~Gp~~f~~~~~y~ 553 (654)
T TIGR00728 474 MQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGNQNNNFTCPNALVFYNASLIWGVIGPKIFSGKGLYC 553 (654)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccCCcccchhhheeeeccccchhcCCCCccH
Confidence 9999999999999999999999
Q ss_pred -----------------------------------------------------hhhhHHHHHHhhhcHHHH--hhhhHHH
Q 043445 410 -----------------------------------------------------TVGIFFNYYVYRRSQCWW--ARHTYIL 434 (486)
Q Consensus 410 -----------------------------------------------------~vg~~~~~~irr~~~~ww--~kYnYvl 434 (486)
++|.++++++|||+++|| +||||++
T Consensus 554 ~~~~~~l~G~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~l 633 (654)
T TIGR00728 554 GLMWFFLVGVGAVLVWLVRKLFPKWIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVL 633 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 389999999999999887 9999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhc
Q 043445 435 AAALDAGVALMGVILYFTLQC 455 (486)
Q Consensus 435 sAaLd~G~ai~~liiff~~~~ 455 (486)
|||||+|++++++++||++++
T Consensus 634 aagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 634 AAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred HHHHhhhHHHHHHHHHHhccC
Confidence 999999999999999999975
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=4.4e-79 Score=673.14 Aligned_cols=391 Identities=36% Similarity=0.669 Sum_probs=359.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccccccccchhhhHHHHHHHhhhhhhhhcCCCcccccCCCCceeecCCCCCCcchhH
Q 043445 49 EVRLTNIVLGLTSCCLLAFGNQFFGYRQNHLYIGSVSAQILVLPIGKLMAATLPSEPIQVPLTPWSFSSNPGPFNLKEHV 128 (486)
Q Consensus 49 eVRa~v~~lG~~~~~~ga~~nq~F~~R~~~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~g~~~~~~LNPGpF~~KEh~ 128 (486)
.+|++ ++|++++++++++||+|.+|++.++.+++++||++||+||.|+|. ++++++||||||+|||+
T Consensus 3 T~Ra~--~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~-----------~~~~~ln~gp~~~kE~~ 69 (624)
T PF03169_consen 3 TFRAV--LLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI-----------GWRFSLNPGPFTIKENN 69 (624)
T ss_pred eHHHH--HHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh-----------ccccccCCCCCCHHHHH
Confidence 47886 999999999999999999999999999999999999999999981 14567999999999999
Q ss_pred hhHHhhhccccchhhhHHH-----------------------------HHHhhhccccccccCCcccCchhhHHHHHHh-
Q 043445 129 LITIFTSCGSGGVFAVGTY-----------------------------IWWAGLFRKYLVDSTYIWWPSNLVQVKLFRN- 178 (486)
Q Consensus 129 litimA~~a~~~aya~~ii-----------------------------yGlAGllR~flV~P~~miwPs~L~~~aL~~s- 178 (486)
++++||+++++.+++.+++ +|+||++||++|+|++|+||+.+++++++++
T Consensus 70 ~vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~al 149 (624)
T PF03169_consen 70 LVQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINAL 149 (624)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHh
Confidence 9999999988877777665 7889999999999999999999999999998
Q ss_pred --------------------------------hhhhhhhhhHHHHhccCCcceehh---h-----chhhhcCCccchhHH
Q 043445 179 --------------------------------LFPSISALSFVCWIWKDSVTEQKL---A-----TVAGFLGSPLATLFF 218 (486)
Q Consensus 179 --------------------------------ifp~Ls~~s~~cwi~p~n~~~~~i---~-----~i~~~~gspL~~P~~ 218 (486)
+||.|+.++|+||++|+|.+++++ + .-..+.|+|+++|++
T Consensus 150 h~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~i~p~~ 229 (624)
T PF03169_consen 150 HSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGLIVPLW 229 (624)
T ss_pred ccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCeeccHH
Confidence 788999999999999999999887 0 001236899999999
Q ss_pred HHHHHHHHHHH------------------------------------------------hhhhhHHHHHHHHHHHHHHHH
Q 043445 219 AIANILVGFFY------------------------------------------------KLYLSVILAFIYGLGFAIQMP 250 (486)
Q Consensus 219 a~~n~~~G~~~------------------------------------------------p~~~s~~~~~~y~~~fa~~~a 250 (486)
+++|+++|.++ +++.++.+.++|+..|+.+++
T Consensus 230 ~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 309 (624)
T PF03169_consen 230 AQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTA 309 (624)
T ss_pred HHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccchhhHH
Confidence 99999999887 788999999999999999999
Q ss_pred HHHHHHHHhhHHHhhhhccc----cccccCCCCccchhhhhcCCCCChhHHHHHHHHHHHHhheeeeeccCCCCCchHhH
Q 043445 251 SISHVALFEGKTIWHMWRKT----SSVKDQFGDVHTRIMNKNYEAVPQLCFHTILIWTFGLSLYTCERFDKQFQLPWWGL 326 (486)
Q Consensus 251 ~i~h~~L~~~k~i~~~~~~~----~~~~~~~~D~h~rlm~~~Y~eVP~Wwy~~~lvvs~~~ai~~~~~~~~~~~lP~w~~ 326 (486)
+++|.+++|+|++++.++.+ ++.+++++|+|+++|++ |||||+|||+..+++++++++++++.+++++++|||+.
T Consensus 310 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ 388 (624)
T PF03169_consen 310 SIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRT-YKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGL 388 (624)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhh-cCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhh
Confidence 99999999999999744321 11245678999999999 99999999999999999999999999965689999999
Q ss_pred HHHHHHHHHHhhcceeeEEEecCCC--ccee--eeEEeeecCCCcchhhHHHHHhHHhHHHHHHhhhhhhhhhccCCChh
Q 043445 327 LLACAMAFFFTLPVEVIQATTNLQT--GLSI--ELVIGYIYPGRPLANVAFKTYGYISMHKALGFIEDFKLGHYMKIQPK 402 (486)
Q Consensus 327 ilAl~l~~i~~lp~g~i~A~T~~~~--~lnv--qlI~G~l~PG~planm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR 402 (486)
++++++++++++|.+++.|+||++| ++|+ |+++|++.||+|++||+++++++++++||.|+++|||+|||+|+|||
T Consensus 389 ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr 468 (624)
T PF03169_consen 389 ILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPR 468 (624)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999999955 5665 99999999999999999999999999999999999999999999999
Q ss_pred hHhhhhh-------------------------------------------------------------------------
Q 043445 403 SMFIVQP------------------------------------------------------------------------- 409 (486)
Q Consensus 403 ~~F~aQi------------------------------------------------------------------------- 409 (486)
.||.+|+
T Consensus 469 ~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~~~~~~~~~~~~~~G~~~~i~ 548 (624)
T PF03169_consen 469 AQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQRGLPYSALPWGFLIGAVLPIL 548 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 9999999
Q ss_pred --------------------------------hhhhHHHHHHhhhcHHHHhhhhHHHHhhhhHHHHHHHHHHHHhh
Q 043445 410 --------------------------------TVGIFFNYYVYRRSQCWWARHTYILAAALDAGVALMGVILYFTL 453 (486)
Q Consensus 410 --------------------------------~vg~~~~~~irr~~~~ww~kYnYvlsAaLd~G~ai~~liiff~~ 453 (486)
++|.++++++||||++||+||||++|||||+|++++++++++++
T Consensus 549 ~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 549 FWLLQRKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred HHHHHhhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999998864
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=99.93 E-value=6.4e-25 Score=240.31 Aligned_cols=324 Identities=13% Similarity=0.089 Sum_probs=219.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccccccccchhhhHHHHHHHhhhhhhhhcCCCcccccCCCCceeecCCCCCCcchhH
Q 043445 49 EVRLTNIVLGLTSCCLLAFGNQFFGYRQNHLYIGSVSAQILVLPIGKLMAATLPSEPIQVPLTPWSFSSNPGPFNLKEHV 128 (486)
Q Consensus 49 eVRa~v~~lG~~~~~~ga~~nq~F~~R~~~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~g~~~~~~LNPGpF~~KEh~ 128 (486)
.+|++ ++|++++++.++.|.|+.+|...+.-.++...++++.+-|.+. ++|++||+
T Consensus 3 T~Rav--i~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~----------------------~~t~~Enn 58 (591)
T TIGR00733 3 TVRGF--ILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR----------------------DRSILENN 58 (591)
T ss_pred cHHHH--HHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc----------------------cCChhHHH
Confidence 47998 9999999999999999999999999999999999999988652 26999999
Q ss_pred hhHHhhhccccch-h-----hhHHH--------------------HHH--hhhccccccccCCcccCchhhHHHHHHh--
Q 043445 129 LITIFTSCGSGGV-F-----AVGTY--------------------IWW--AGLFRKYLVDSTYIWWPSNLVQVKLFRN-- 178 (486)
Q Consensus 129 litimA~~a~~~a-y-----a~~ii--------------------yGl--AGllR~flV~P~~miwPs~L~~~aL~~s-- 178 (486)
++|.+|+++.+-+ . +..++ +|. +-++||.+|.+.++.||+-.+++-++++
T Consensus 59 ivQT~asA~~~~ag~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g~ 138 (591)
T TIGR00733 59 MVQTAASAAGTLSSVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAGD 138 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHccc
Confidence 9999999876421 0 00010 333 6689999999999999999999977665
Q ss_pred -------------------hhhhhhhhhH-----HHHhccCCcceehh--hchhhhcCCccchhHHHHHHHHHHHHH---
Q 043445 179 -------------------LFPSISALSF-----VCWIWKDSVTEQKL--ATVAGFLGSPLATLFFAIANILVGFFY--- 229 (486)
Q Consensus 179 -------------------ifp~Ls~~s~-----~cwi~p~n~~~~~i--~~i~~~~gspL~~P~~a~~n~~~G~~~--- 229 (486)
++..++.+.+ -.|....... ..+ ..-++++|..+.++....+++++|.++
T Consensus 139 ~g~~~~~~~~l~~g~~~s~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWg 217 (591)
T TIGR00733 139 KARNGTGAKPIAYGGILASIYAFLGSLRVWSGTLSAAKLVGRRA-LYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWG 217 (591)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCchHHHHHhcCCcc-eEEEecccHHHHcCceeeChHHHHHHHHHHHHHHH
Confidence 1222211110 1111110000 011 222457788999999999999999888
Q ss_pred --hhhhhH-----------HHHHHHH-------HHHHHHHHHHHHHHHHhhHHHhhhhcc--cc-ccccCCCCccchhhh
Q 043445 230 --KLYLSV-----------ILAFIYG-------LGFAIQMPSISHVALFEGKTIWHMWRK--TS-SVKDQFGDVHTRIMN 286 (486)
Q Consensus 230 --p~~~s~-----------~~~~~y~-------~~fa~~~a~i~h~~L~~~k~i~~~~~~--~~-~~~~~~~D~h~rlm~ 286 (486)
-|+++. ...+..+ ..-++.++.+. .++...|.+++..+. +. +.+++++| .-|
T Consensus 218 vl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r 292 (591)
T TIGR00733 218 VAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALW-TLLKLRGPIARGIKAGLEAARRRQAGEA----VLR 292 (591)
T ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccc----ccc
Confidence 222211 0111122 22233344444 466677766653321 11 10111222 234
Q ss_pred hcCCCCChhHHHHHHHHHHHHhheeeeeccCCCCCch---------HhHHHHHHHHHHHhhcceeeEEE--ecCCCccee
Q 043445 287 KNYEAVPQLCFHTILIWTFGLSLYTCERFDKQFQLPW---------WGLLLACAMAFFFTLPVEVIQAT--TNLQTGLSI 355 (486)
Q Consensus 287 ~~Y~eVP~Wwy~~~lvvs~~~ai~~~~~~~~~~~lP~---------w~~ilAl~l~~i~~lp~g~i~A~--T~~~~~lnv 355 (486)
. -+|+|.||-..++++ +++. ...+ .++.|. .+.+++++++++++.-.+.+.+. |+.+|.-..
T Consensus 293 ~-~~dip~~~v~~~~~~-~~~~---~~~~--~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~ 365 (591)
T TIGR00733 293 T-EEDLPINIVLTLVAL-FVIP---LADF--LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGI 365 (591)
T ss_pred c-cccccHHHHHHHHHH-HHHH---HHHH--hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHH
Confidence 4 688998864433222 2222 1111 344443 56788888899988888888889 667876443
Q ss_pred ----eeEEeeec------------CCCcchhhHHHHHhHHhHHHHHHhhhhhhhhhccCCChhhHhhhhh
Q 043445 356 ----ELVIGYIY------------PGRPLANVAFKTYGYISMHKALGFIEDFKLGHYMKIQPKSMFIVQP 409 (486)
Q Consensus 356 ----qlI~G~l~------------PG~planm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~aQi 409 (486)
|++.+.+. |+...+|++..+....+++||.|++||||.||.++..||+||.+|+
T Consensus 366 ~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~ 435 (591)
T TIGR00733 366 GIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALI 435 (591)
T ss_pred HHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHH
Confidence 99999887 3445678999999999999999999999999999999999999999
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=5.5e-14 Score=150.30 Aligned_cols=334 Identities=12% Similarity=0.082 Sum_probs=188.9
Q ss_pred CChhhhhhhhhhhhhHHHHHHHHHHHhhccccccccchhhhHHHHHHHhhhhhhhhcCCCcccccCCCCceeecCCCCCC
Q 043445 44 DNPIEEVRLTNIVLGLTSCCLLAFGNQFFGYRQNHLYIGSVSAQILVLPIGKLMAATLPSEPIQVPLTPWSFSSNPGPFN 123 (486)
Q Consensus 44 ~sPy~eVRa~v~~lG~~~~~~ga~~nq~F~~R~~~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~g~~~~~~LNPGpF~ 123 (486)
+-|--.+|++ ++|++.+++..+.|.++.+|......+++=+.++|..+-|.+. ++|
T Consensus 11 ~l~elTlr~v--IlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~----------------------~~s 66 (624)
T COG1297 11 FLPELTLRGV--ILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK----------------------GSS 66 (624)
T ss_pred cccchhHHHH--HHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC----------------------ccc
Confidence 4455669998 9999999999999999999999999999999999877655332 579
Q ss_pred cchhHhhHHhhhccccchh-------hhHHH--------------------HHH--hhhccccccccCCcccCchhhHHH
Q 043445 124 LKEHVLITIFTSCGSGGVF-------AVGTY--------------------IWW--AGLFRKYLVDSTYIWWPSNLVQVK 174 (486)
Q Consensus 124 ~KEh~litimA~~a~~~ay-------a~~ii--------------------yGl--AGllR~flV~P~~miwPs~L~~~a 174 (486)
+-||.++|.+|+++.+.+- +..++ +|. .-++||-+|-+++.-||.-.+++-
T Consensus 67 ilENNmVQT~ASAagtlsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAE 146 (624)
T COG1297 67 ILENNMVQTQASAAGTLSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAE 146 (624)
T ss_pred hhhhHHHHHHHhhhccccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHH
Confidence 9999999999998765322 11111 222 337999999999999999999998
Q ss_pred HHHh----------------------hhhhhhh-h-----hHHHHhccCCcceehh--hchhhhcCCccchhHHHHHHHH
Q 043445 175 LFRN----------------------LFPSISA-L-----SFVCWIWKDSVTEQKL--ATVAGFLGSPLATLFFAIANIL 224 (486)
Q Consensus 175 L~~s----------------------ifp~Ls~-~-----s~~cwi~p~n~~~~~i--~~i~~~~gspL~~P~~a~~n~~ 224 (486)
++++ ++..+++ + ++-+|.. .+.....+ ..-.+++|-..++.+.+-.-.+
T Consensus 147 vL~~g~~~~gd~~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~~~~~-~~~~~~~lg~~~S~AliG~GylvGl~~~iaml 225 (624)
T COG1297 147 VLKAGNQREGDASGIKLIALGGALAALYSLLASGLRVIASSLSAAFS-VGRAAFALGLGLSLALIGAGYLVGLPAGIAML 225 (624)
T ss_pred HHHhcCCCCCCcccchhhhhhhHHHHHHHHHhccceeehhhHHHHHH-hcchhhhhcccccHHHhCceEEecchHHHHHH
Confidence 8876 3333333 0 3333333 11111111 1112234555666666666777
Q ss_pred HHHHH-----hhhhh-----------HHHHHHHHHH------HHHHHHHHHHHHHHhhHHHhh----hhcc-ccccccCC
Q 043445 225 VGFFY-----KLYLS-----------VILAFIYGLG------FAIQMPSISHVALFEGKTIWH----MWRK-TSSVKDQF 277 (486)
Q Consensus 225 ~G~~~-----p~~~s-----------~~~~~~y~~~------fa~~~a~i~h~~L~~~k~i~~----~~~~-~~~~~~~~ 277 (486)
+|.++ -|+++ ...++.++.. =..+.-.-.+.++.-.|.+.+ .++. |.+ ++..
T Consensus 226 ~G~~iaWgvavP~~~~~~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~gi~~~f~~~r~~-~~~~ 304 (624)
T COG1297 226 IGIFIAWGVAVPLLTLIVPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRGIKATFESARGR-RRAG 304 (624)
T ss_pred HHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-cccc
Confidence 77665 22222 2333333221 111222222334444444322 1211 100 0000
Q ss_pred CCccchhhhhcCCCCChhHHHHHHHHHHHHhheeeeeccCCC---CCc----hHhHHHHHHHHHHHhhcceeeEEE----
Q 043445 278 GDVHTRIMNKNYEAVPQLCFHTILIWTFGLSLYTCERFDKQF---QLP----WWGLLLACAMAFFFTLPVEVIQAT---- 346 (486)
Q Consensus 278 ~D~h~rlm~~~Y~eVP~Wwy~~~lvvs~~~ai~~~~~~~~~~---~lP----~w~~ilAl~l~~i~~lp~g~i~A~---- 346 (486)
+ + . |. .+|+|.=|=...++...+--.+...+.-+++ ..- .-+.++++++++.+.--.|.+.+.
T Consensus 305 ~--~--~-rt-e~Dl~~~~~~~~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSs 378 (624)
T COG1297 305 A--V--S-RT-ERDLPPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSS 378 (624)
T ss_pred c--c--c-ch-hhcCChhhHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 0 0 22 4455544432222222111111111110011 122 223344444444444434444443
Q ss_pred ----ecCCCc---------cee-eeEEeeecCCCc----chhhHHHHHhHHhHHHHHHhhhhhhhhhccCCChhhHhhhh
Q 043445 347 ----TNLQTG---------LSI-ELVIGYIYPGRP----LANVAFKTYGYISMHKALGFIEDFKLGHYMKIQPKSMFIVQ 408 (486)
Q Consensus 347 ----T~~~~~---------lnv-qlI~G~l~PG~p----lanm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~aQ 408 (486)
+|+.+- +.+ |..++..-|... ..+++-.+....++.++-|.+||||+||+.+.-||.|+.+|
T Consensus 379 sspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqval 458 (624)
T COG1297 379 SSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVAL 458 (624)
T ss_pred CCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHH
Confidence 122211 001 444456666544 55777788888899999999999999999999999999999
Q ss_pred h
Q 043445 409 P 409 (486)
Q Consensus 409 i 409 (486)
+
T Consensus 459 i 459 (624)
T COG1297 459 I 459 (624)
T ss_pred H
Confidence 8
No 7
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=39.13 E-value=43 Score=36.55 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.1
Q ss_pred CChhHHHHHHHHHHHHhhee
Q 043445 292 VPQLCFHTILIWTFGLSLYT 311 (486)
Q Consensus 292 VP~Wwy~~~lvvs~~~ai~~ 311 (486)
-++++|+.++++.+++-+..
T Consensus 251 ~~~~~~~~~~~l~~~~li~g 270 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYG 270 (465)
T ss_pred cccceeehHHHHHHHHHHhc
Confidence 46889999999999877653
No 8
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=37.24 E-value=28 Score=34.49 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=28.9
Q ss_pred hhcCCCCChhHHHHHHHHHHHHhheeeeeccCCCCCchHhHHHHHHHHHHHhh
Q 043445 286 NKNYEAVPQLCFHTILIWTFGLSLYTCERFDKQFQLPWWGLLLACAMAFFFTL 338 (486)
Q Consensus 286 ~~~Y~eVP~Wwy~~~lvvs~~~ai~~~~~~~~~~~lP~w~~ilAl~l~~i~~l 338 (486)
++++|.+++|..++ +++.+++++++... ++-+|+.+++++.++++...
T Consensus 21 rk~dp~l~~~ml~a-~l~~~~v~v~ig~l----~~~~~~~~i~gi~~g~l~am 68 (224)
T PF13829_consen 21 RKEDPKLPWLMLGA-FLGPIAVFVLIGLL----FGSWWYWLIIGILLGLLAAM 68 (224)
T ss_pred HHHCcchHHHHHHH-HHHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHHH
Confidence 33378887655444 44444555554444 34667778888887776543
No 9
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=36.25 E-value=44 Score=37.69 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCCccccCCChhhhhhhhhhhhhHHHHHHHHHHHhhccc---cccc--cchhhhHHHHHHHhhhhhhhh
Q 043445 36 GNLYEEVNDNPIEEVRLTNIVLGLTSCCLLAFGNQFFGY---RQNH--LYIGSVSAQILVLPIGKLMAA 99 (486)
Q Consensus 36 ~~~~~~~~~sPy~eVRa~v~~lG~~~~~~ga~~nq~F~~---R~~~--i~is~~~~ql~~yp~G~~~a~ 99 (486)
|+|++.++.-.|+||..-.++.+++.+.+.+.+-....+ ..|. +-++-.+.-+++.|.|+.-+.
T Consensus 340 ~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~ 408 (624)
T PF03169_consen 340 EDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGE 408 (624)
T ss_pred cCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhh
Confidence 334444556788888877566666655555544444444 4444 566777777788888877764
No 10
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=32.30 E-value=64 Score=29.96 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=47.7
Q ss_pred cCCChhhhhhhhh--hhhhHHHHHHHHHHHhhccccccccchhhhHHHHHHHhhhhhhhhcCCC
Q 043445 42 VNDNPIEEVRLTN--IVLGLTSCCLLAFGNQFFGYRQNHLYIGSVSAQILVLPIGKLMAATLPS 103 (486)
Q Consensus 42 ~~~sPy~eVRa~v--~~lG~~~~~~ga~~nq~F~~R~~~i~is~~~~ql~~yp~G~~~a~~lP~ 103 (486)
+|+|+ .|+++ |++=++.-.+++.+.|+.++--....+..+....++|-+-|--+|-+-+
T Consensus 70 ~Eksl---L~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~ 130 (150)
T COG3086 70 EEKSL---LKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAK 130 (150)
T ss_pred CcccH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45665 56665 8888888888888889888888888888898999999998888887655
No 11
>PTZ00207 hypothetical protein; Provisional
Probab=30.86 E-value=5.1e+02 Score=29.39 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=17.5
Q ss_pred CCCChhHHHHHHHHHHHHhhee
Q 043445 290 EAVPQLCFHTILIWTFGLSLYT 311 (486)
Q Consensus 290 ~eVP~Wwy~~~lvvs~~~ai~~ 311 (486)
++.|.|-|...+.+++++++..
T Consensus 238 q~~p~~~f~~~~~i~~~l~~yl 259 (591)
T PTZ00207 238 QKAPMWRFVYGFVILIILIVFL 259 (591)
T ss_pred cCCCceehhhHHHHHHHHHHHH
Confidence 8999999988888777776543
No 12
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=28.94 E-value=83 Score=32.69 Aligned_cols=151 Identities=9% Similarity=0.170 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhhccccccccCCCCccchhhhhcCCCCChhHHHHHHHHHHHHhheeeeeccCCCCCchH
Q 043445 245 FAIQMPSISHVALFEGKTIWHMWRKTSSVKDQFGDVHTRIMNKNYEAVPQLCFHTILIWTFGLSLYTCERFDKQFQLPWW 324 (486)
Q Consensus 245 fa~~~a~i~h~~L~~~k~i~~~~~~~~~~~~~~~D~h~rlm~~~Y~eVP~Wwy~~~lvvs~~~ai~~~~~~~~~~~lP~w 324 (486)
...+.-.++..++.+++++++. .++...++..+..++..++-.+.+-.|..+- .+++++.++.+...+ .-.++| .
T Consensus 160 ~~~l~~~~~ff~L~d~~~~~~~--~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq-~i~al~~gi~~~igl-~ilgvp-~ 234 (355)
T COG0628 160 SLLLVLVLLFFLLLDGERLRRK--LIKLLPRKLRKRARRILSEVNATLSGYLRGQ-VLVALIVGILTGIGL-LILGVP-Y 234 (355)
T ss_pred HHHHHHHHHHHHHcCHHHHHHH--HHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHccc-H
Confidence 3344445556688888988873 3322122222222222222134454454443 344444444432221 034664 5
Q ss_pred hHHHHHHHHHHHhhcc-eeeEEEecCCCcceeeeEEeeecCCCcchhhHHHHHhHHhHHHHH-HhhhhhhhhhccCCChh
Q 043445 325 GLLLACAMAFFFTLPV-EVIQATTNLQTGLSIELVIGYIYPGRPLANVAFKTYGYISMHKAL-GFIEDFKLGHYMKIQPK 402 (486)
Q Consensus 325 ~~ilAl~l~~i~~lp~-g~i~A~T~~~~~lnvqlI~G~l~PG~planm~f~~~g~~~~~qa~-~~~~DlKlGhY~kiPPR 402 (486)
++++++..++.-.+|. |-.-+.. | =.+.++..-| ..-...-.+++...+|-. ++++..=+|.-+|++|=
T Consensus 235 alllgil~g~~~lIP~iG~~i~~i---p----~~i~al~~~~--~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~ 305 (355)
T COG0628 235 ALLLGLLAGLLSLIPYIGPVIGLI---P----AVIIALLQGG--PWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPL 305 (355)
T ss_pred HHHHHHHHHHHHhhcccccHHHHH---H----HHHHHHHhcc--hHHHHHHHHHHHHHHHHhcceeccccccccCCCCHH
Confidence 6778888888777773 3211100 0 2222223322 122333444555555444 46777778999999999
Q ss_pred hHhhhhh
Q 043445 403 SMFIVQP 409 (486)
Q Consensus 403 ~~F~aQi 409 (486)
.++.+.+
T Consensus 306 ~ilisll 312 (355)
T COG0628 306 VILLSLL 312 (355)
T ss_pred HHHHHHH
Confidence 9999998
No 13
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.06 E-value=18 Score=33.81 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=24.6
Q ss_pred HHHHHhhhhcccccCCCCccccCCChhhhhhhh
Q 043445 21 AMCISILVQELKERDGNLYEEVNDNPIEEVRLT 53 (486)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~sPy~eVRa~ 53 (486)
-+|+|+|-+.-|+-..-+...|-..|...||.+
T Consensus 88 ~vCISILH~pgdD~~gyE~~~erW~Pv~tvetI 120 (171)
T KOG0425|consen 88 DVCISILHPPGDDPSGYELPSERWLPVQTVETI 120 (171)
T ss_pred CEEEEeecCCCCCcccCCChhhccCCccchhHh
Confidence 479999988776443334445669999999997
No 14
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.67 E-value=75 Score=21.37 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHhh
Q 043445 55 IVLGLTSCCLLAFGNQF 71 (486)
Q Consensus 55 ~~lG~~~~~~ga~~nq~ 71 (486)
|++|+++++..+.+|..
T Consensus 6 WilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 6 WILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999998864
No 15
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.46 E-value=75 Score=21.71 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHhhc
Q 043445 55 IVLGLTSCCLLAFGNQFF 72 (486)
Q Consensus 55 ~~lG~~~~~~ga~~nq~F 72 (486)
|++|+.+.+..+.+|..-
T Consensus 6 WilG~~lA~~~~v~~a~w 23 (30)
T TIGR02106 6 WILGTLLACAFGVLNAMW 23 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999998653
No 16
>PRK14749 hypothetical protein; Provisional
Probab=23.36 E-value=76 Score=21.60 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHhh
Q 043445 55 IVLGLTSCCLLAFGNQF 71 (486)
Q Consensus 55 ~~lG~~~~~~ga~~nq~ 71 (486)
|++|+.+.|..+.+|-.
T Consensus 6 WiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 6 WFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999999864
No 17
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=21.51 E-value=1.4e+02 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.009 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHHHHhheeeeeccCCCCCchH
Q 043445 292 VPQLCFHTILIWTFGLSLYTCERFDKQFQLPWW 324 (486)
Q Consensus 292 VP~Wwy~~~lvvs~~~ai~~~~~~~~~~~lP~w 324 (486)
+|.|||+..++++..++...... ...++.|
T Consensus 9 ~p~~wW~~~~~~~~~~~~~v~~~---~~~~~~~ 38 (143)
T PF11292_consen 9 VPWWWWLAAAAVAALLAAEVVLG---PPSLWAW 38 (143)
T ss_pred CCHHHHHHHHHHHHHHHHhhhcC---cchHHHH
Confidence 89999988877744444333333 3455555
Done!