Query 043445
Match_columns 486
No_of_seqs 170 out of 821
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 22.1 2.1E+02 0.0072 28.7 7.7 22 270-292 24-46 (340)
2 2jwa_A Receptor tyrosine-prote 18.9 79 0.0027 22.4 2.7 31 43-76 7-37 (44)
3 2k1a_A Integrin alpha-IIB; sin 18.1 98 0.0033 21.7 3.0 21 318-338 5-25 (42)
4 2knc_A Integrin alpha-IIB; tra 17.6 91 0.0031 23.1 2.9 21 318-338 7-27 (54)
5 2l8s_A Integrin alpha-1; trans 16.2 1E+02 0.0034 22.9 2.8 21 318-338 4-24 (54)
6 2kzq_A Envelope glycoprotein E 16.1 43 0.0015 22.7 0.7 11 14-24 9-19 (36)
7 2kog_A Vesicle-associated memb 13.3 1.4E+02 0.0047 25.4 3.3 18 420-437 86-103 (119)
8 3hd7_A Vesicle-associated memb 12.0 1.7E+02 0.0058 23.5 3.4 18 421-438 59-76 (91)
9 1iij_A ERBB-2 receptor protein 10.4 69 0.0024 21.7 0.4 30 43-75 3-32 (35)
10 2fot_C Alpha-II spectrin spect 8.9 1.2E+02 0.004 20.8 1.1 21 34-54 10-30 (42)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=22.14 E-value=2.1e+02 Score=28.74 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=12.7
Q ss_pred ccccccCCCCccc-hhhhhcCCCC
Q 043445 270 TSSVKDQFGDVHT-RIMNKNYEAV 292 (486)
Q Consensus 270 ~~~~~~~~~D~h~-rlm~~~Y~eV 292 (486)
|+..+++..||+. +.|.+ .++.
T Consensus 24 ~~~~~~~~~~ps~~~~~~~-~~~~ 46 (340)
T 3iyz_A 24 RDLYDDDDKDPSSRSIMVA-FKGV 46 (340)
T ss_pred CCCCCCCCCCCcchhhhhh-hhhh
Confidence 3344556678855 55655 6665
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.89 E-value=79 Score=22.44 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=21.3
Q ss_pred CCChhhhhhhhhhhhhHHHHHHHHHHHhhccccc
Q 043445 43 NDNPIEEVRLTNIVLGLTSCCLLAFGNQFFGYRQ 76 (486)
Q Consensus 43 ~~sPy~eVRa~v~~lG~~~~~~ga~~nq~F~~R~ 76 (486)
+.||.+-+-+. ++| ++..+..++-.++.+|-
T Consensus 7 ~~~~~~~Ia~~--vVG-vll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 7 RASPLTSIISA--VVG-ILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CCCSHHHHHHH--HHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCcccchHHH--HHH-HHHHHHHHHHHHhheeh
Confidence 46899988888 888 44555556666666553
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=18.05 E-value=98 Score=21.68 Aligned_cols=21 Identities=14% Similarity=0.388 Sum_probs=14.8
Q ss_pred CCCCchHhHHHHHHHHHHHhh
Q 043445 318 QFQLPWWGLLLACAMAFFFTL 338 (486)
Q Consensus 318 ~~~lP~w~~ilAl~l~~i~~l 338 (486)
+.+.|+|-+++|++.+.++..
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~ 25 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLT 25 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHH
Confidence 456788888888777766543
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=17.64 E-value=91 Score=23.08 Aligned_cols=21 Identities=14% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCCCchHhHHHHHHHHHHHhh
Q 043445 318 QFQLPWWGLLLACAMAFFFTL 338 (486)
Q Consensus 318 ~~~lP~w~~ilAl~l~~i~~l 338 (486)
+..+|||-+++|++.+.++..
T Consensus 7 ~~~vp~wiIi~svl~GLllL~ 27 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLLLT 27 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHH
Confidence 456788888887777766544
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=16.24 E-value=1e+02 Score=22.86 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=15.2
Q ss_pred CCCCchHhHHHHHHHHHHHhh
Q 043445 318 QFQLPWWGLLLACAMAFFFTL 338 (486)
Q Consensus 318 ~~~lP~w~~ilAl~l~~i~~l 338 (486)
+.++|||-+++|++.+.++..
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLM 24 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHH
Confidence 456888888888777766544
No 6
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=16.13 E-value=43 Score=22.71 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=8.8
Q ss_pred cchhhhHHHHH
Q 043445 14 PLVHIHQAMCI 24 (486)
Q Consensus 14 ~~~~~~~~~~~ 24 (486)
-+||+||.+|-
T Consensus 9 GliHlhqnivd 19 (36)
T 2kzq_A 9 GLLHLHQNIVD 19 (36)
T ss_dssp HHHHHHHHHHT
T ss_pred cceehhhhheh
Confidence 37899999883
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=13.29 E-value=1.4e+02 Score=25.40 Aligned_cols=18 Identities=11% Similarity=0.543 Sum_probs=12.9
Q ss_pred hhhcHHHHhhhhHHHHhh
Q 043445 420 YRRSQCWWARHTYILAAA 437 (486)
Q Consensus 420 rr~~~~ww~kYnYvlsAa 437 (486)
|-|+..||++|-..+--+
T Consensus 86 kl~rkmwwkn~K~~iii~ 103 (119)
T 2kog_A 86 KLKRKYWWKNLKMMIILG 103 (119)
T ss_dssp HHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346788999998766543
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=11.96 E-value=1.7e+02 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.615 Sum_probs=12.3
Q ss_pred hhcHHHHhhhhHHHHhhh
Q 043445 421 RRSQCWWARHTYILAAAL 438 (486)
Q Consensus 421 r~~~~ww~kYnYvlsAaL 438 (486)
=++.-||+++-+.+-.++
T Consensus 59 l~rkmwwkn~K~~iii~~ 76 (91)
T 3hd7_A 59 LKRKYWWKNLKMMIILGV 76 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356789998777665443
No 9
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=10.37 E-value=69 Score=21.66 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=18.9
Q ss_pred CCChhhhhhhhhhhhhHHHHHHHHHHHhhcccc
Q 043445 43 NDNPIEEVRLTNIVLGLTSCCLLAFGNQFFGYR 75 (486)
Q Consensus 43 ~~sPy~eVRa~v~~lG~~~~~~ga~~nq~F~~R 75 (486)
+.||.|-+-|. ++| ++.++.-++...+..|
T Consensus 3 ~~s~~~sIaag--Vvg-lll~vii~l~~~~~iR 32 (35)
T 1iij_A 3 RASPVTFIIAT--VVG-VLLFLILVVVVGILIK 32 (35)
T ss_dssp THHHHHHHHHH--HHH-HHHHHHHTTTTTHHHH
T ss_pred CCCCCcEeHHH--HHH-HHHHHHHHHHhheEEe
Confidence 36888888888 788 5555554444444433
No 10
>2fot_C Alpha-II spectrin spectrin; calmodulin, calmodulin binding domain, metal binding, structural protein; 2.45A {Homo sapiens}
Probab=8.94 E-value=1.2e+02 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=9.7
Q ss_pred cCCCCccccCCChhhhhhhhh
Q 043445 34 RDGNLYEEVNDNPIEEVRLTN 54 (486)
Q Consensus 34 ~~~~~~~~~~~sPy~eVRa~v 54 (486)
.||.|.....-||...||..|
T Consensus 10 ~de~dsk~asaspwks~rl~v 30 (42)
T 2fot_C 10 RDETDSKTASASPWKSARLMV 30 (42)
T ss_dssp ----------CCHHHHHHHHH
T ss_pred cccccccccccCcchhhhhee
Confidence 455554444579999999875
Done!