Query 043445
Match_columns 486
No_of_seqs 170 out of 821
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 08:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ofcx1 a.4.1.3 (X:799-850) SA 6.2 95 0.0069 21.0 1.3 13 419-431 37-49 (52)
2 d2jdid1 a.69.1.1 (D:358-475) F 6.0 1.3E+02 0.0094 23.7 2.3 35 3-38 63-99 (118)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 4.3 2.4E+02 0.018 17.4 2.2 13 324-336 19-31 (37)
4 d1prtf_ b.40.2.1 (F:) Pertussi 4.1 89 0.0065 22.8 -0.1 10 41-50 72-81 (98)
5 d1nc5a_ a.102.1.6 (A:) Hypothe 4.0 3.2E+02 0.023 24.2 4.0 53 1-54 210-271 (363)
6 d2evea1 b.122.1.8 (A:2-149) Hy 3.6 1.5E+02 0.011 24.1 1.1 14 382-395 31-44 (148)
7 d1xkra_ d.252.1.1 (A:) Chemota 3.5 2.5E+02 0.018 23.2 2.5 36 44-81 108-143 (205)
8 d2gbsa1 b.122.1.8 (A:2-137) Hy 3.4 1.7E+02 0.012 23.4 1.1 15 382-396 33-47 (136)
9 d1zcea1 b.122.1.8 (A:2-147) Hy 3.4 1.7E+02 0.012 23.7 1.1 15 382-396 34-48 (146)
10 d1skye1 a.69.1.1 (E:357-470) F 3.3 2.6E+02 0.019 21.7 2.1 35 3-38 60-96 (114)
No 1
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.19 E-value=95 Score=20.99 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=6.3
Q ss_pred HhhhcHHHHhhhh
Q 043445 419 VYRRSQCWWARHT 431 (486)
Q Consensus 419 irr~~~~ww~kYn 431 (486)
+++|....|+||+
T Consensus 37 V~~Y~~vFw~ry~ 49 (52)
T d1ofcx1 37 VIEYNAVFWERCT 49 (52)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555554
No 2
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.96 E-value=1.3e+02 Score=23.71 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=27.2
Q ss_pred hhchhcCCCcccchhhhHHH--HHHhhhhcccccCCCC
Q 043445 3 CLEVFRGLPIVPLVHIHQAM--CISILVQELKERDGNL 38 (486)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (486)
++|+|-|.|- ..|.+.|.+ |..+|..+.|+++|+.
T Consensus 63 vae~fTg~~G-~~V~l~dTi~g~~~Il~G~~D~~pE~~ 99 (118)
T d2jdid1 63 VAEVFTGHLG-KLVPLKETIKGFQQILAGEYDHLPEQA 99 (118)
T ss_dssp GGHHHHSSCC-CCCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred eeeeecCCCc-ceecHHHHHHHHHHHhCCCCCCCCHHH
Confidence 6789988874 356677765 6777999999998884
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.31 E-value=2.4e+02 Score=17.35 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=6.3
Q ss_pred HhHHHHHHHHHHH
Q 043445 324 WGLLLACAMAFFF 336 (486)
Q Consensus 324 w~~ilAl~l~~i~ 336 (486)
||+++..+++..|
T Consensus 19 ~GlLlifvl~vLF 31 (37)
T d2axtl1 19 LGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555544444444
No 4
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=4.06 E-value=89 Score=22.84 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=7.5
Q ss_pred ccCCChhhhh
Q 043445 41 EVNDNPIEEV 50 (486)
Q Consensus 41 ~~~~sPy~eV 50 (486)
..||||||..
T Consensus 72 tvedspypgt 81 (98)
T d1prtf_ 72 TVEDSPYPGT 81 (98)
T ss_dssp EECCCSSSSS
T ss_pred EecCCCCCCC
Confidence 3579999864
No 5
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}
Probab=3.99 E-value=3.2e+02 Score=24.24 Aligned_cols=53 Identities=19% Similarity=0.057 Sum_probs=31.9
Q ss_pred CchhchhcCCCcc-----cchhhhHHHHHHhhh-hccc-ccCCCCccccCCC--hhhhhhhhh
Q 043445 1 MGCLEVFRGLPIV-----PLVHIHQAMCISILV-QELK-ERDGNLYEEVNDN--PIEEVRLTN 54 (486)
Q Consensus 1 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~s--Py~eVRa~v 54 (486)
||..|++|=+|.. -++...+.++..++. |+-| ..--++- ++.++ .|+|.-++.
T Consensus 210 ~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~q~~d~G~w~~~~-d~p~~~~~~~etSata 271 (363)
T d1nc5a_ 210 MSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIV-DKGDRSDNWLESSGSC 271 (363)
T ss_dssp HHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBT-TCTTSTTCCBCHHHHH
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhccCCCCccccccc-cCCCCCCCccchHHHH
Confidence 4678888888863 378888999999866 3322 2211111 11123 378888874
No 6
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=3.64 E-value=1.5e+02 Score=24.09 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.5
Q ss_pred HHHHHhhhhhhhhh
Q 043445 382 HKALGFIEDFKLGH 395 (486)
Q Consensus 382 ~qa~~~~~DlKlGh 395 (486)
.||.+++.|||.|-
T Consensus 31 yqArn~lr~M~~GD 44 (148)
T d2evea1 31 YQARNFLRTMAEGD 44 (148)
T ss_dssp HHHHHHHHHCCTTC
T ss_pred HHHHHHHHhcccCC
Confidence 59999999999985
No 7
>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima [TaxId: 2336]}
Probab=3.54 E-value=2.5e+02 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=28.2
Q ss_pred CChhhhhhhhhhhhhHHHHHHHHHHHhhccccccccch
Q 043445 44 DNPIEEVRLTNIVLGLTSCCLLAFGNQFFGYRQNHLYI 81 (486)
Q Consensus 44 ~sPy~eVRa~v~~lG~~~~~~ga~~nq~F~~R~~~i~i 81 (486)
.|-..||--+ ++|..+..+...++.=+.+.+|....
T Consensus 108 ~sal~EvgNI--l~ga~l~~ls~~l~~~i~~s~P~~~~ 143 (205)
T d1xkra_ 108 ASALREIGNI--MCGTYVSALADFLGFKIDTLPPQLVI 143 (205)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHTCCEEECCCEEEE
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCEeccCCEEEe
Confidence 4556666665 89999999998888888888888764
No 8
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=3.41 E-value=1.7e+02 Score=23.43 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=13.0
Q ss_pred HHHHHhhhhhhhhhc
Q 043445 382 HKALGFIEDFKLGHY 396 (486)
Q Consensus 382 ~qa~~~~~DlKlGhY 396 (486)
.||.+++.|+|.|..
T Consensus 33 yqArn~mr~M~~GD~ 47 (136)
T d2gbsa1 33 HSAKLHMVAMRRGDR 47 (136)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHhccCCE
Confidence 699999999999854
No 9
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.37 E-value=1.7e+02 Score=23.72 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=13.3
Q ss_pred HHHHHhhhhhhhhhc
Q 043445 382 HKALGFIEDFKLGHY 396 (486)
Q Consensus 382 ~qa~~~~~DlKlGhY 396 (486)
.||.+++.|+|.|..
T Consensus 34 yqArn~lr~Mk~GD~ 48 (146)
T d1zcea1 34 YQARNNMRAMKIGDK 48 (146)
T ss_dssp HHHHHHHHTCCTTCE
T ss_pred HHHHHHHHhccCCCE
Confidence 599999999999965
No 10
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=3.30 E-value=2.6e+02 Score=21.70 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.1
Q ss_pred hhchhcCCCcccchhhhHHH--HHHhhhhcccccCCCC
Q 043445 3 CLEVFRGLPIVPLVHIHQAM--CISILVQELKERDGNL 38 (486)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (486)
.+|+|-|.|-. .|.+.|.+ |..+|.-|.|+.+|+.
T Consensus 60 vaE~fTG~~G~-~V~l~dTi~g~~~Il~G~~D~~pE~~ 96 (114)
T d1skye1 60 VAEQFTGQPGS-YVPVKETVRGFKEILEGKYDHLPEDR 96 (114)
T ss_dssp TTHHHHSCCCC-CCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred eceeecCCCee-EeeHHHHHHHHHHHhCCCCCCCCHHH
Confidence 46888888754 57777776 6778999999998884
Done!