Query 043446
Match_columns 784
No_of_seqs 323 out of 2088
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 3E-140 7E-145 1248.4 84.5 784 1-784 5-793 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 5E-109 1E-113 965.6 55.8 750 18-784 3-763 (769)
3 PRK03562 glutathione-regulated 100.0 4E-47 8.7E-52 441.3 48.1 412 37-475 4-421 (621)
4 PRK10669 putative cation:proto 100.0 3.9E-46 8.5E-51 432.1 48.1 414 39-473 7-436 (558)
5 PRK03659 glutathione-regulated 100.0 6E-46 1.3E-50 431.1 48.5 411 38-474 5-420 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 1.2E-44 2.7E-49 398.8 43.9 379 37-433 5-386 (397)
7 PRK05326 potassium/proton anti 100.0 1.9E-40 4.2E-45 384.2 37.9 381 36-433 4-389 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 4.2E-40 9.2E-45 366.0 -3.7 373 45-431 3-378 (380)
9 COG4651 RosB Kef-type K+ trans 100.0 9.4E-35 2E-39 288.4 30.4 381 33-435 2-391 (408)
10 TIGR00932 2a37 transporter, mo 100.0 7.7E-35 1.7E-39 308.3 31.8 270 48-335 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 3.4E-30 7.4E-35 294.2 39.6 367 25-403 2-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 7.6E-29 1.6E-33 283.5 37.5 367 44-431 4-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 1.3E-26 2.9E-31 257.6 38.8 379 38-431 6-406 (429)
14 COG3263 NhaP-type Na+/H+ and K 100.0 2.1E-26 4.6E-31 239.9 26.9 350 38-407 7-360 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 4.1E-25 9E-30 252.3 37.6 381 37-432 8-417 (559)
16 PRK11175 universal stress prot 99.9 5.7E-22 1.2E-26 213.8 18.8 287 454-784 4-299 (305)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 8.4E-19 1.8E-23 177.3 23.0 346 44-399 20-382 (467)
18 KOG1965 Sodium/hydrogen exchan 99.8 1.1E-18 2.4E-23 191.5 23.3 386 38-433 35-456 (575)
19 PRK14853 nhaA pH-dependent sod 99.7 5E-15 1.1E-19 160.6 32.5 295 98-426 62-389 (423)
20 cd01988 Na_H_Antiporter_C The 99.5 2E-13 4.3E-18 127.7 12.7 131 455-608 1-131 (132)
21 TIGR00773 NhaA Na+/H+ antiport 99.4 2.5E-11 5.5E-16 129.4 25.2 270 98-400 52-344 (373)
22 KOG1966 Sodium/hydrogen exchan 99.4 1.7E-13 3.7E-18 149.9 5.8 373 45-432 49-449 (670)
23 PRK15456 universal stress prot 99.4 1.1E-12 2.5E-17 124.6 10.6 137 454-608 3-141 (142)
24 cd01989 STK_N The N-terminal d 99.4 2E-12 4.3E-17 123.4 10.8 140 455-608 1-143 (146)
25 PRK15005 universal stress prot 99.3 5.6E-12 1.2E-16 120.0 10.6 137 454-608 3-143 (144)
26 PRK09982 universal stress prot 99.3 2.7E-11 5.9E-16 115.1 10.3 134 454-608 4-137 (142)
27 PRK15118 universal stress glob 99.2 3.6E-11 7.9E-16 114.5 10.6 133 454-608 4-137 (144)
28 cd01987 USP_OKCHK USP domain i 99.2 7.3E-11 1.6E-15 109.2 10.5 122 455-608 1-123 (124)
29 PF00582 Usp: Universal stress 99.1 1.2E-10 2.6E-15 108.9 7.8 133 454-608 3-139 (140)
30 PRK14856 nhaA pH-dependent sod 99.1 1.5E-08 3.4E-13 110.0 24.5 293 98-426 68-425 (438)
31 cd01989 STK_N The N-terminal d 99.1 3.7E-10 7.9E-15 107.7 10.3 140 627-784 1-144 (146)
32 PRK10116 universal stress prot 99.1 6.6E-10 1.4E-14 105.4 11.5 134 454-609 4-138 (142)
33 PRK09560 nhaA pH-dependent sod 99.1 3.8E-08 8.3E-13 105.4 25.3 270 98-400 59-353 (389)
34 PRK09982 universal stress prot 99.1 4.9E-10 1.1E-14 106.4 8.9 135 625-784 3-138 (142)
35 PRK15005 universal stress prot 99.0 3.2E-09 6.9E-14 100.9 13.0 139 625-784 2-144 (144)
36 PRK09561 nhaA pH-dependent sod 99.0 8.6E-08 1.9E-12 102.5 24.9 270 98-400 59-351 (388)
37 PRK14855 nhaA pH-dependent sod 99.0 8.6E-08 1.9E-12 103.8 24.8 284 98-419 63-402 (423)
38 PRK11175 universal stress prot 99.0 1.2E-09 2.5E-14 117.9 10.5 143 453-613 152-303 (305)
39 PRK14854 nhaA pH-dependent sod 99.0 1.5E-07 3.2E-12 100.3 25.8 271 98-401 56-349 (383)
40 cd01988 Na_H_Antiporter_C The 99.0 6.9E-09 1.5E-13 96.7 12.7 131 627-784 1-132 (132)
41 PRK15456 universal stress prot 99.0 7.9E-09 1.7E-13 98.1 13.2 138 625-784 2-142 (142)
42 PRK10116 universal stress prot 99.0 2.2E-09 4.8E-14 101.8 8.8 134 624-783 2-137 (142)
43 PRK15118 universal stress glob 98.9 4.5E-09 9.8E-14 100.0 8.6 135 625-784 3-138 (144)
44 cd00293 USP_Like Usp: Universa 98.9 1.1E-08 2.3E-13 94.5 10.4 130 455-608 1-130 (130)
45 cd01987 USP_OKCHK USP domain i 98.9 1.1E-08 2.4E-13 94.6 9.7 122 627-783 1-123 (124)
46 PF00582 Usp: Universal stress 98.9 1.9E-08 4.1E-13 93.9 11.3 131 625-783 2-139 (140)
47 PF06965 Na_H_antiport_1: Na+/ 98.8 2.9E-08 6.2E-13 106.1 12.7 286 98-416 55-367 (378)
48 COG0589 UspA Universal stress 98.7 7.2E-08 1.6E-12 92.1 11.6 143 453-608 5-150 (154)
49 COG3004 NhaA Na+/H+ antiporter 98.7 6.9E-06 1.5E-10 84.4 24.3 265 101-401 65-355 (390)
50 cd00293 USP_Like Usp: Universa 98.4 3.1E-06 6.8E-11 77.8 12.9 129 627-783 1-130 (130)
51 PRK12652 putative monovalent c 98.2 7E-06 1.5E-10 89.1 11.7 127 624-775 4-145 (357)
52 PRK12460 2-keto-3-deoxyglucona 98.1 0.00071 1.5E-08 71.0 22.1 253 107-433 51-306 (312)
53 PRK12652 putative monovalent c 98.1 2.6E-05 5.5E-10 84.7 11.7 111 453-577 5-125 (357)
54 COG0589 UspA Universal stress 98.1 6E-05 1.3E-09 71.7 12.9 145 624-784 4-151 (154)
55 PF05684 DUF819: Protein of un 98.0 0.011 2.4E-07 65.2 31.3 316 61-411 24-357 (378)
56 COG0798 ACR3 Arsenite efflux p 97.6 0.038 8.3E-07 58.4 25.2 272 65-395 20-295 (342)
57 COG0786 GltS Na+/glutamate sym 97.6 0.045 9.7E-07 59.0 25.7 117 280-397 235-360 (404)
58 PF03616 Glt_symporter: Sodium 97.6 0.053 1.1E-06 59.7 27.3 97 287-385 246-345 (368)
59 COG0385 Predicted Na+-dependen 97.5 0.077 1.7E-06 56.3 26.6 152 98-258 35-191 (319)
60 TIGR00698 conserved hypothetic 97.5 0.16 3.4E-06 55.0 28.8 144 57-219 26-174 (335)
61 PF03812 KdgT: 2-keto-3-deoxyg 97.4 0.016 3.5E-07 60.6 20.0 258 106-432 50-311 (314)
62 PRK10490 sensor protein KdpD; 97.2 0.002 4.3E-08 79.6 11.5 125 451-609 248-373 (895)
63 TIGR00210 gltS sodium--glutama 97.1 0.33 7.2E-06 53.9 26.9 107 287-396 244-356 (398)
64 TIGR00832 acr3 arsenical-resis 96.9 0.24 5.1E-06 53.8 23.6 102 105-217 47-153 (328)
65 PF03601 Cons_hypoth698: Conse 96.9 0.4 8.6E-06 51.3 24.4 144 58-218 22-167 (305)
66 PF03390 2HCT: 2-hydroxycarbox 96.8 0.29 6.2E-06 53.9 23.0 321 40-405 31-394 (414)
67 TIGR00793 kdgT 2-keto-3-deoxyg 96.8 0.094 2E-06 54.7 18.2 256 107-431 51-309 (314)
68 PF13593 DUF4137: SBF-like CPA 96.8 0.47 1E-05 51.2 24.3 113 100-221 30-147 (313)
69 COG3180 AbrB Putative ammonia 96.5 1.6 3.4E-05 47.1 30.8 300 39-400 7-318 (352)
70 COG2205 KdpD Osmosensitive K+ 96.3 0.021 4.6E-07 66.6 10.6 125 451-607 246-371 (890)
71 PRK03562 glutathione-regulated 96.3 0.1 2.3E-06 61.8 16.6 117 268-388 9-127 (621)
72 PF05145 AmoA: Putative ammoni 96.2 2.4 5.2E-05 45.9 27.3 155 269-432 157-315 (318)
73 COG3493 CitS Na+/citrate sympo 96.1 0.65 1.4E-05 49.8 19.6 85 320-406 327-414 (438)
74 PF01758 SBF: Sodium Bile acid 96.1 0.25 5.4E-06 49.1 16.1 143 105-256 2-149 (187)
75 PRK10490 sensor protein KdpD; 96.1 0.037 7.9E-07 68.6 12.2 126 622-783 247-372 (895)
76 TIGR00932 2a37 transporter, mo 96.0 0.17 3.7E-06 53.5 15.2 129 275-408 3-133 (273)
77 PRK05274 2-keto-3-deoxyglucona 95.9 0.28 6.1E-06 52.9 16.3 46 108-153 54-99 (326)
78 PRK10669 putative cation:proto 95.7 0.25 5.4E-06 58.0 16.3 134 270-408 12-146 (558)
79 PRK03659 glutathione-regulated 95.7 0.47 1E-05 56.2 18.3 108 51-175 226-333 (601)
80 PRK03818 putative transporter; 95.6 0.42 9.1E-06 55.7 17.3 131 38-185 6-141 (552)
81 PF06826 Asp-Al_Ex: Predicted 95.6 0.49 1.1E-05 46.0 15.0 127 45-186 4-136 (169)
82 COG0475 KefB Kef-type K+ trans 95.5 0.38 8.3E-06 53.7 16.0 139 267-412 9-153 (397)
83 PF03956 DUF340: Membrane prot 95.4 0.21 4.6E-06 49.5 12.2 129 66-217 2-135 (191)
84 PF03601 Cons_hypoth698: Conse 95.4 0.4 8.6E-06 51.3 14.9 129 271-401 5-139 (305)
85 PRK05326 potassium/proton anti 95.2 0.33 7.1E-06 57.1 15.2 118 270-390 12-133 (562)
86 TIGR00783 ccs citrate carrier 95.2 1.3 2.7E-05 47.9 17.9 118 287-405 203-327 (347)
87 TIGR00841 bass bile acid trans 94.9 6.2 0.00014 42.0 27.1 43 357-399 206-249 (286)
88 COG2855 Predicted membrane pro 94.7 0.36 7.8E-06 51.4 11.8 115 282-399 31-146 (334)
89 TIGR03802 Asp_Ala_antiprt aspa 94.6 0.2 4.4E-06 58.5 11.0 84 41-140 13-97 (562)
90 COG2855 Predicted membrane pro 94.3 8.9 0.00019 41.1 23.8 104 57-176 32-135 (334)
91 TIGR00844 c_cpa1 na(+)/h(+) an 94.3 0.84 1.8E-05 54.5 15.1 70 319-390 75-146 (810)
92 COG2205 KdpD Osmosensitive K+ 94.3 0.2 4.2E-06 58.9 9.6 119 622-772 245-363 (890)
93 TIGR00698 conserved hypothetic 94.2 1.2 2.5E-05 48.3 14.8 125 272-399 10-143 (335)
94 PLN03159 cation/H(+) antiporte 93.8 1.2 2.7E-05 54.5 15.8 43 622-664 455-499 (832)
95 TIGR01625 YidE_YbjL_dupl AspT/ 93.8 0.51 1.1E-05 45.1 9.9 114 62-188 21-139 (154)
96 TIGR03082 Gneg_AbrB_dup membra 93.1 1.1 2.5E-05 43.0 11.4 99 46-158 3-104 (156)
97 PRK04972 putative transporter; 93.1 1.3 2.8E-05 51.8 13.9 121 41-185 15-140 (558)
98 TIGR03802 Asp_Ala_antiprt aspa 92.5 1.4 3E-05 51.7 13.0 116 60-188 413-532 (562)
99 TIGR00831 a_cpa1 Na+/H+ antipo 92.4 1.4 2.9E-05 51.3 12.7 116 272-392 6-124 (525)
100 TIGR03082 Gneg_AbrB_dup membra 91.1 5.4 0.00012 38.3 13.3 121 273-400 4-128 (156)
101 PF03616 Glt_symporter: Sodium 90.7 2.7 5.8E-05 46.4 12.2 115 320-435 67-187 (368)
102 TIGR00210 gltS sodium--glutama 90.6 6.3 0.00014 43.9 15.0 169 40-217 221-394 (398)
103 PF05145 AmoA: Putative ammoni 90.4 3.4 7.3E-05 44.7 12.5 101 40-154 154-256 (318)
104 cd01984 AANH_like Adenine nucl 90.4 0.3 6.4E-06 41.5 3.6 49 552-606 35-84 (86)
105 TIGR00808 malonate_madM malona 90.4 3.8 8.3E-05 40.2 11.2 108 40-154 18-132 (254)
106 COG1346 LrgB Putative effector 90.3 20 0.00044 36.2 16.6 109 309-430 63-171 (230)
107 PRK04972 putative transporter; 88.6 5 0.00011 46.9 13.0 133 43-188 386-527 (558)
108 COG2985 Predicted permease [Ge 87.3 2.5 5.4E-05 47.1 8.6 101 65-188 37-145 (544)
109 PRK03818 putative transporter; 87.3 18 0.00038 42.4 16.3 106 65-183 403-513 (552)
110 PRK04288 antiholin-like protei 87.2 35 0.00076 34.9 16.3 104 313-429 70-173 (232)
111 COG1346 LrgB Putative effector 86.9 33 0.00071 34.8 15.5 127 43-188 11-143 (230)
112 TIGR02432 lysidine_TilS_N tRNA 86.9 3.8 8.2E-05 40.5 9.3 37 627-663 1-37 (189)
113 PRK12460 2-keto-3-deoxyglucona 86.8 6.6 0.00014 41.8 11.2 75 65-152 169-243 (312)
114 PF01171 ATP_bind_3: PP-loop f 86.7 1.4 3.1E-05 43.4 6.1 93 627-744 1-107 (182)
115 PRK03359 putative electron tra 85.2 3.5 7.6E-05 43.0 8.3 113 630-768 30-149 (256)
116 PF03547 Mem_trans: Membrane t 84.5 8.1 0.00017 42.9 11.5 106 291-399 9-118 (385)
117 TIGR00946 2a69 he Auxin Efflux 84.2 27 0.00059 37.7 15.1 134 60-214 180-314 (321)
118 PRK04288 antiholin-like protei 84.1 43 0.00092 34.3 15.1 83 96-188 64-146 (232)
119 COG0786 GltS Na+/glutamate sym 84.0 5.2 0.00011 43.6 9.0 116 319-434 68-187 (404)
120 COG4651 RosB Kef-type K+ trans 82.9 5.3 0.00011 41.8 8.1 131 268-406 10-144 (408)
121 COG3329 Predicted permease [Ge 82.4 18 0.0004 37.9 11.7 119 288-412 16-138 (372)
122 COG1646 Predicted phosphate-bi 81.7 7.3 0.00016 39.4 8.4 80 540-633 15-95 (240)
123 PF01012 ETF: Electron transfe 81.5 5.5 0.00012 38.4 7.6 83 635-744 14-101 (164)
124 PRK12342 hypothetical protein; 80.9 3.2 7E-05 43.2 5.9 34 630-664 29-62 (254)
125 COG0025 NhaP NhaP-type Na+/H+ 80.8 11 0.00023 42.8 10.6 121 270-393 12-137 (429)
126 PRK10711 hypothetical protein; 80.6 67 0.0014 32.9 15.0 82 344-429 87-168 (231)
127 PF00999 Na_H_Exchanger: Sodiu 79.9 0.61 1.3E-05 51.8 0.3 112 274-388 6-123 (380)
128 TIGR00930 2a30 K-Cl cotranspor 79.2 1.8E+02 0.004 36.5 47.9 134 448-609 570-708 (953)
129 cd01992 PP-ATPase N-terminal d 78.3 11 0.00024 37.0 8.7 37 627-663 1-37 (185)
130 PF03977 OAD_beta: Na+-transpo 77.9 8.1 0.00018 41.1 7.7 113 316-436 65-179 (360)
131 TIGR00783 ccs citrate carrier 77.9 20 0.00043 39.0 10.9 110 53-173 194-306 (347)
132 TIGR03136 malonate_biotin Na+- 77.7 7.8 0.00017 41.8 7.6 115 316-437 101-217 (399)
133 PF03956 DUF340: Membrane prot 77.2 5.8 0.00013 39.4 6.2 50 347-396 57-106 (191)
134 cd01993 Alpha_ANH_like_II This 76.7 19 0.00041 35.1 10.0 37 627-663 1-39 (185)
135 TIGR02185 Trep_Strep conserved 76.3 79 0.0017 31.4 14.0 128 242-373 41-186 (189)
136 COG2985 Predicted permease [Ge 75.0 13 0.00029 41.6 8.6 109 62-183 395-507 (544)
137 COG2431 Predicted membrane pro 74.8 35 0.00077 35.5 11.0 76 64-152 108-187 (297)
138 TIGR00659 conserved hypothetic 74.5 1.1E+02 0.0023 31.4 16.2 83 344-430 86-168 (226)
139 PRK06801 hypothetical protein; 71.8 21 0.00046 37.9 9.2 111 537-656 16-131 (286)
140 PRK10660 tilS tRNA(Ile)-lysidi 71.3 24 0.00051 40.1 10.1 39 625-663 15-54 (436)
141 COG0037 MesJ tRNA(Ile)-lysidin 70.8 26 0.00057 37.3 10.0 36 626-663 22-57 (298)
142 PF05982 DUF897: Domain of unk 70.6 32 0.00068 36.9 10.0 68 65-145 183-250 (327)
143 cd01984 AANH_like Adenine nucl 70.0 4.9 0.00011 33.9 3.3 33 628-661 1-33 (86)
144 PF09605 Trep_Strep: Hypotheti 68.7 1.3E+02 0.0027 29.8 14.2 127 242-372 39-182 (186)
145 PF04172 LrgB: LrgB-like famil 68.2 1.4E+02 0.0031 30.2 14.8 82 344-429 76-157 (215)
146 COG3180 AbrB Putative ammonia 67.3 57 0.0012 35.5 11.2 98 43-154 190-289 (352)
147 PRK08185 hypothetical protein; 66.1 27 0.00058 37.0 8.5 110 537-656 11-125 (283)
148 PF04172 LrgB: LrgB-like famil 65.7 1.2E+02 0.0026 30.7 12.7 71 110-188 60-130 (215)
149 COG2086 FixA Electron transfer 65.2 13 0.00028 38.7 5.9 112 629-769 30-149 (260)
150 PRK15475 oxaloacetate decarbox 64.8 12 0.00026 40.4 5.4 127 317-450 131-265 (433)
151 PRK06806 fructose-bisphosphate 64.8 35 0.00076 36.2 9.1 112 537-656 16-131 (281)
152 TIGR01625 YidE_YbjL_dupl AspT/ 64.3 19 0.00041 34.4 6.4 95 289-385 22-123 (154)
153 PRK15476 oxaloacetate decarbox 64.2 12 0.00027 40.3 5.4 127 317-450 131-265 (433)
154 PRK15477 oxaloacetate decarbox 64.2 12 0.00027 40.3 5.4 127 317-450 131-265 (433)
155 COG3263 NhaP-type Na+/H+ and K 63.6 64 0.0014 35.9 10.7 77 315-392 60-136 (574)
156 PRK09903 putative transporter 62.4 1.6E+02 0.0034 31.7 14.0 116 60-195 171-288 (314)
157 TIGR01109 Na_pump_decarbB sodi 60.2 33 0.00071 36.6 7.6 113 316-436 59-179 (354)
158 PRK05253 sulfate adenylyltrans 60.2 35 0.00076 36.6 8.2 40 625-664 27-66 (301)
159 PF03390 2HCT: 2-hydroxycarbox 60.2 1.5E+02 0.0032 33.2 13.1 103 60-173 269-373 (414)
160 TIGR00946 2a69 he Auxin Efflux 59.3 2.6E+02 0.0055 30.1 28.2 135 288-430 181-319 (321)
161 TIGR02039 CysD sulfate adenyly 59.1 25 0.00055 37.4 6.8 38 626-663 20-57 (294)
162 PRK04125 murein hydrolase regu 58.5 1.6E+02 0.0035 27.7 11.2 105 37-151 7-115 (141)
163 PF06181 DUF989: Protein of un 58.4 2.5E+02 0.0054 29.7 13.8 46 313-359 222-268 (300)
164 TIGR00659 conserved hypothetic 57.7 2.3E+02 0.0049 29.0 14.6 83 96-188 58-140 (226)
165 COG0679 Predicted permeases [G 57.4 2.7E+02 0.0059 29.9 32.4 137 288-430 167-306 (311)
166 COG3969 Predicted phosphoadeno 57.2 27 0.00059 37.3 6.4 39 624-662 26-65 (407)
167 cd01713 PAPS_reductase This do 55.7 38 0.00081 32.2 7.1 36 627-663 1-36 (173)
168 PRK07998 gatY putative fructos 55.2 53 0.0012 34.8 8.4 111 537-656 16-131 (283)
169 PRK12737 gatY tagatose-bisphos 53.7 46 0.00099 35.3 7.6 111 537-656 16-131 (284)
170 PF13194 DUF4010: Domain of un 53.6 2.5E+02 0.0055 28.3 15.6 65 149-217 10-75 (211)
171 PF13593 DUF4137: SBF-like CPA 53.5 1.1E+02 0.0024 33.0 10.7 91 290-383 6-98 (313)
172 PF03812 KdgT: 2-keto-3-deoxyg 53.2 57 0.0012 34.8 8.1 75 65-152 174-248 (314)
173 PF01889 DUF63: Membrane prote 51.8 3.1E+02 0.0068 28.9 17.5 48 167-214 147-196 (273)
174 COG0679 Predicted permeases [G 51.8 2.7E+02 0.0059 29.9 13.5 103 290-395 11-116 (311)
175 TIGR01521 FruBisAldo_II_B fruc 51.5 67 0.0015 35.0 8.6 110 537-655 14-136 (347)
176 PRK10696 tRNA 2-thiocytidine b 51.3 65 0.0014 33.6 8.4 38 625-662 29-68 (258)
177 PRK12857 fructose-1,6-bisphosp 50.5 50 0.0011 35.0 7.3 111 537-656 16-131 (284)
178 PF01884 PcrB: PcrB family; I 50.3 78 0.0017 32.4 8.3 77 543-635 10-86 (230)
179 TIGR00793 kdgT 2-keto-3-deoxyg 49.2 1.1E+02 0.0024 32.5 9.4 75 65-152 174-248 (314)
180 PRK13399 fructose-1,6-bisphosp 49.0 82 0.0018 34.4 8.7 112 537-657 16-140 (347)
181 TIGR01858 tag_bisphos_ald clas 47.3 62 0.0013 34.3 7.4 111 537-656 14-129 (282)
182 KOG1650 Predicted K+/H+-antipo 47.3 2.6E+02 0.0057 34.2 13.7 66 104-176 313-378 (769)
183 KOG2310 DNA repair exonuclease 47.0 29 0.00064 39.3 5.0 80 552-634 39-125 (646)
184 PF02040 ArsB: Arsenical pump 46.8 4.7E+02 0.01 29.5 23.3 37 177-213 117-153 (423)
185 PRK04125 murein hydrolase regu 46.1 1.9E+02 0.0041 27.2 9.5 47 323-370 69-117 (141)
186 PRK12563 sulfate adenylyltrans 46.0 46 0.00099 35.8 6.2 40 625-664 37-76 (312)
187 cd00947 TBP_aldolase_IIB Tagat 44.4 76 0.0016 33.5 7.5 111 537-656 11-126 (276)
188 PRK12738 kbaY tagatose-bisphos 44.3 75 0.0016 33.7 7.5 111 537-656 16-131 (286)
189 PRK10711 hypothetical protein; 44.2 3.7E+02 0.0081 27.6 14.4 83 96-188 59-141 (231)
190 TIGR00840 b_cpa1 sodium/hydrog 44.2 1.4E+02 0.0031 35.0 10.5 72 320-393 70-150 (559)
191 cd00946 FBP_aldolase_IIA Class 43.5 88 0.0019 34.1 8.0 76 537-614 14-99 (345)
192 KOG2718 Na+-bile acid cotransp 42.5 1E+02 0.0023 33.8 8.4 48 105-153 117-164 (371)
193 PRK12933 secD preprotein trans 41.8 3.7E+02 0.0079 31.8 13.0 56 131-188 465-522 (604)
194 PRK09195 gatY tagatose-bisphos 41.3 83 0.0018 33.4 7.2 111 537-656 16-131 (284)
195 COG2201 CheB Chemotaxis respon 41.2 97 0.0021 33.8 7.8 45 554-608 36-80 (350)
196 PF01171 ATP_bind_3: PP-loop f 41.2 2.4E+02 0.0051 27.5 10.2 95 455-575 1-106 (182)
197 PF03547 Mem_trans: Membrane t 40.7 5.3E+02 0.011 28.3 22.5 86 289-375 244-335 (385)
198 PF03652 UPF0081: Uncharacteri 40.0 1E+02 0.0023 28.7 7.0 60 551-613 37-97 (135)
199 COG3493 CitS Na+/citrate sympo 39.8 5.6E+02 0.012 28.3 13.0 110 54-174 280-393 (438)
200 TIGR01109 Na_pump_decarbB sodi 39.5 5.2E+02 0.011 27.9 21.2 86 45-137 5-96 (354)
201 PF02355 SecD_SecF: Protein ex 39.4 3.9E+02 0.0085 26.4 14.7 25 163-187 87-111 (189)
202 PF06826 Asp-Al_Ex: Predicted 39.3 3.3E+02 0.0072 26.4 10.5 95 286-383 21-120 (169)
203 PF07905 PucR: Purine cataboli 39.1 2.1E+02 0.0045 26.0 8.8 88 481-575 20-109 (123)
204 PF05684 DUF819: Protein of un 38.7 3.5E+02 0.0076 30.0 12.0 90 318-412 56-149 (378)
205 TIGR00342 thiazole biosynthesi 37.4 2.1E+02 0.0046 31.6 10.1 39 621-663 168-206 (371)
206 PRK05274 2-keto-3-deoxyglucona 36.6 5.9E+02 0.013 27.7 12.9 46 107-152 205-250 (326)
207 COG5505 Predicted integral mem 36.6 5.6E+02 0.012 27.4 27.0 83 320-406 276-358 (384)
208 TIGR00167 cbbA ketose-bisphosp 36.3 1.2E+02 0.0027 32.2 7.7 112 537-657 16-135 (288)
209 PRK01658 holin-like protein; V 36.2 3.4E+02 0.0074 24.8 11.3 105 37-151 4-112 (122)
210 TIGR01520 FruBisAldo_II_A fruc 36.2 1.5E+02 0.0033 32.4 8.3 76 537-614 25-111 (357)
211 PF05982 DUF897: Domain of unk 36.1 4.2E+02 0.009 28.6 11.4 90 326-415 33-124 (327)
212 PRK09196 fructose-1,6-bisphosp 35.8 1.1E+02 0.0025 33.3 7.4 112 537-657 16-140 (347)
213 TIGR02432 lysidine_TilS_N tRNA 35.5 2.5E+02 0.0054 27.3 9.4 95 455-575 1-109 (189)
214 PRK05835 fructose-bisphosphate 35.5 1.3E+02 0.0027 32.4 7.5 111 537-656 15-131 (307)
215 PRK01565 thiamine biosynthesis 35.4 97 0.0021 34.6 7.1 39 621-663 172-210 (394)
216 PF02667 SCFA_trans: Short cha 35.1 7.2E+02 0.016 28.2 14.9 128 294-436 67-216 (453)
217 PF03686 UPF0146: Uncharacteri 34.6 67 0.0014 29.5 4.5 36 542-577 72-107 (127)
218 TIGR02230 ATPase_gene1 F0F1-AT 34.0 1.3E+02 0.0028 26.5 6.0 38 137-174 51-89 (100)
219 PRK04169 geranylgeranylglycery 34.0 5.4E+02 0.012 26.4 16.3 83 542-639 9-91 (232)
220 PRK09197 fructose-bisphosphate 33.8 1.4E+02 0.0031 32.5 7.7 76 537-614 19-104 (350)
221 COG3371 Predicted membrane pro 33.4 3E+02 0.0066 26.9 8.9 64 59-134 73-136 (181)
222 cd01986 Alpha_ANH_like Adenine 32.8 1.7E+02 0.0037 25.4 6.9 32 628-663 1-32 (103)
223 COG1883 OadB Na+-transporting 32.8 16 0.00034 38.1 0.2 124 319-450 83-209 (375)
224 COG3748 Predicted membrane pro 32.5 4.4E+02 0.0096 28.3 10.5 39 320-359 227-265 (407)
225 PRK05812 secD preprotein trans 31.7 5.1E+02 0.011 29.9 12.2 17 241-257 472-488 (498)
226 PF03977 OAD_beta: Na+-transpo 31.4 7.1E+02 0.015 27.1 26.6 253 42-346 4-270 (360)
227 TIGR01769 GGGP geranylgeranylg 31.2 1.6E+02 0.0035 29.6 7.1 76 544-635 2-80 (205)
228 PRK10712 PTS system fructose-s 31.0 5.3E+02 0.011 30.4 12.2 49 277-326 303-355 (563)
229 cd04740 DHOD_1B_like Dihydroor 31.0 4.9E+02 0.011 27.5 11.4 178 555-769 105-293 (296)
230 PRK01821 hypothetical protein; 30.9 4.4E+02 0.0096 24.5 11.0 103 37-149 9-115 (133)
231 PRK09765 PTS system 2-O-a-mann 30.0 1E+03 0.022 28.5 17.2 27 231-257 417-443 (631)
232 TIGR00366 conserved hypothetic 29.8 8.6E+02 0.019 27.5 16.3 132 294-437 64-214 (438)
233 cd01536 PBP1_ABC_sugar_binding 29.7 4.5E+02 0.0098 26.4 10.8 50 522-573 14-63 (267)
234 PF01758 SBF: Sodium Bile acid 29.7 5.4E+02 0.012 25.1 11.8 20 239-258 136-157 (187)
235 PF01507 PAPS_reduct: Phosphoa 29.6 1.2E+02 0.0026 28.9 5.9 33 627-663 1-33 (174)
236 COG2035 Predicted membrane pro 29.4 6.9E+02 0.015 26.3 17.2 41 34-76 57-97 (276)
237 COG1380 Putative effector of m 29.3 4.6E+02 0.01 24.2 10.4 108 36-152 4-114 (128)
238 TIGR00832 acr3 arsenical-resis 29.1 7.7E+02 0.017 26.7 12.9 69 328-398 54-127 (328)
239 TIGR02810 agaZ_gatZ D-tagatose 28.9 7.2E+02 0.016 27.9 11.9 107 543-663 14-124 (420)
240 TIGR01859 fruc_bis_ald_ fructo 28.8 2.1E+02 0.0046 30.3 7.9 111 537-655 14-130 (282)
241 PRK10478 putative PTS system f 28.5 1.9E+02 0.0041 31.8 7.6 38 289-326 101-141 (359)
242 cd01995 ExsB ExsB is a transcr 28.4 2.9E+02 0.0063 26.4 8.4 32 627-662 1-32 (169)
243 TIGR02359 thiW thiW protein. L 28.3 5.5E+02 0.012 24.7 11.3 48 64-116 34-84 (160)
244 PRK01658 holin-like protein; V 27.9 4.7E+02 0.01 23.9 9.5 45 323-368 66-112 (122)
245 COG0395 UgpE ABC-type sugar tr 27.0 7.7E+02 0.017 26.1 11.9 81 122-202 70-152 (281)
246 PRK14561 hypothetical protein; 27.0 3.3E+02 0.0072 26.9 8.6 31 627-662 2-32 (194)
247 COG1902 NemA NADH:flavin oxido 26.9 3.6E+02 0.0078 29.8 9.5 66 580-663 192-259 (363)
248 PRK15458 tagatose 6-phosphate 26.8 8.6E+02 0.019 27.3 12.1 107 543-663 18-128 (426)
249 PRK00109 Holliday junction res 26.7 1.5E+02 0.0032 27.8 5.6 58 553-613 42-99 (138)
250 PRK01821 hypothetical protein; 26.1 5.4E+02 0.012 24.0 9.8 45 323-368 71-117 (133)
251 PRK15052 D-tagatose-1,6-bispho 26.1 7.5E+02 0.016 27.7 11.5 107 543-663 15-125 (421)
252 cd00453 FTBP_aldolase_II Fruct 26.0 2E+02 0.0043 31.2 7.0 75 537-613 11-96 (340)
253 PRK14854 nhaA pH-dependent sod 25.8 3.7E+02 0.0081 29.7 9.2 25 313-337 55-79 (383)
254 PRK14853 nhaA pH-dependent sod 25.5 7.9E+02 0.017 27.7 11.9 25 313-337 61-85 (423)
255 cd01118 ArsB_permease Anion pe 25.5 9.6E+02 0.021 26.6 22.5 24 52-75 10-33 (416)
256 cd01992 PP-ATPase N-terminal d 25.4 3.6E+02 0.0079 26.0 8.6 36 455-492 1-36 (185)
257 COG1560 HtrB Lauroyl/myristoyl 25.3 3.4E+02 0.0074 29.2 8.8 63 588-663 182-244 (308)
258 PF01116 F_bP_aldolase: Fructo 25.1 54 0.0012 34.9 2.6 111 538-657 16-131 (287)
259 KOG1965 Sodium/hydrogen exchan 24.9 1.9E+02 0.004 33.7 6.9 69 320-392 103-180 (575)
260 PRK02261 methylaspartate mutas 24.9 5.7E+02 0.012 23.8 9.3 103 537-651 30-136 (137)
261 PF06808 DctM: DctM-like trans 24.8 1E+03 0.022 26.7 16.0 34 397-431 346-379 (416)
262 PRK04148 hypothetical protein; 24.8 1.1E+02 0.0023 28.6 4.2 35 543-577 80-114 (134)
263 PRK10653 D-ribose transporter 24.8 5.3E+02 0.011 26.9 10.4 75 522-611 41-115 (295)
264 PRK07709 fructose-bisphosphate 24.7 2.6E+02 0.0057 29.7 7.7 71 537-614 16-89 (285)
265 TIGR00250 RNAse_H_YqgF RNAse H 23.6 2.9E+02 0.0063 25.5 6.9 60 551-613 34-93 (130)
266 PF06181 DUF989: Protein of un 22.9 9.3E+02 0.02 25.6 12.7 29 190-218 213-241 (300)
267 PF04018 DUF368: Domain of unk 22.5 9E+02 0.019 25.3 14.9 44 31-76 53-96 (257)
268 PRK08610 fructose-bisphosphate 22.5 3.1E+02 0.0068 29.1 7.7 112 537-656 16-134 (286)
269 PRK07315 fructose-bisphosphate 22.5 2.6E+02 0.0056 29.9 7.2 112 537-656 16-133 (293)
270 cd01712 ThiI ThiI is required 22.4 4.1E+02 0.0088 25.6 8.2 34 627-664 1-34 (177)
271 PF03600 CitMHS: Citrate trans 22.2 1E+03 0.022 25.7 17.0 17 178-194 118-134 (351)
272 PF02844 GARS_N: Phosphoribosy 21.5 84 0.0018 27.7 2.7 24 552-575 49-72 (100)
273 PRK14212 camphor resistance pr 21.5 2.3E+02 0.005 26.1 5.8 24 344-367 95-118 (128)
274 PRK14856 nhaA pH-dependent sod 21.1 3.8E+02 0.0083 30.2 8.3 26 313-338 67-92 (438)
275 PRK12569 hypothetical protein; 21.0 4.4E+02 0.0096 27.3 8.1 102 525-653 94-206 (245)
276 PRK14208 camphor resistance pr 20.8 4.2E+02 0.0091 24.3 7.3 39 328-366 79-117 (126)
277 COG4666 TRAP-type uncharacteri 20.7 9E+02 0.02 28.6 11.3 88 42-152 457-560 (642)
278 TIGR00268 conserved hypothetic 20.7 1.6E+02 0.0035 30.5 5.2 35 625-663 12-46 (252)
279 cd01994 Alpha_ANH_like_IV This 20.6 1.5E+02 0.0033 29.4 4.8 32 627-662 1-32 (194)
280 TIGR03136 malonate_biotin Na+- 20.6 1.2E+03 0.025 25.8 22.9 256 40-346 22-307 (399)
281 PRK01663 C4-dicarboxylate tran 20.4 1.3E+03 0.027 26.2 14.1 226 57-301 1-232 (428)
282 KOG3826 Na+/H+ antiporter [Ino 20.4 1.3E+02 0.0028 30.7 4.0 125 43-180 102-232 (252)
283 cd06320 PBP1_allose_binding Pe 20.3 8.6E+02 0.019 24.7 10.8 76 522-612 14-91 (275)
284 PF02601 Exonuc_VII_L: Exonucl 20.2 1.8E+02 0.004 31.2 5.7 52 693-745 28-87 (319)
285 cd01985 ETF The electron trans 20.1 3.4E+02 0.0075 26.3 7.2 27 634-661 17-43 (181)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=3.1e-140 Score=1248.35 Aligned_cols=784 Identities=80% Similarity=1.277 Sum_probs=704.6
Q ss_pred CccccCCCCCccc-ccCCcccCCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccc
Q 043446 1 MATAANKTDETIV-CYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSV 79 (784)
Q Consensus 1 ~~~~~~~~~~~~~-c~~~~~~~s~g~~~~~~~l~~~l~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~ 79 (784)
|.+.-|++++..+ |+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||.++|||++|+++||++
T Consensus 5 ~~~~~~~~~~~~~~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~ 84 (832)
T PLN03159 5 MSTGKNPSTASSVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSV 84 (832)
T ss_pred cCCCCCCCCCCCcccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhh
Confidence 4577899888886 996557899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 043446 80 LGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGM 159 (784)
Q Consensus 80 lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~ 159 (784)
+|+++.+.+.+||.++.+.++.++++|++++||.+|+|+|++.+||++|+++.+++.++++|+++++.+++++...+.+.
T Consensus 85 lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~ 164 (832)
T PLN03159 85 LGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNV 164 (832)
T ss_pred hCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99998888889998888899999999999999999999999999999999999999999999999998888774322122
Q ss_pred chhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 043446 160 NQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAF 239 (784)
Q Consensus 160 ~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (784)
.....++++|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......++.++..+++
T Consensus 165 ~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f 244 (832)
T PLN03159 165 HQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAF 244 (832)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 22356789999999999999999999999999999999999999999999999998877665443334456777777888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 043446 240 VIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVS 319 (784)
Q Consensus 240 ~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~ 319 (784)
++++.+++||++.|+.|+.+++++.++.++.++++++++++++++.+|+|+++|||++|+++|+++.++++.+|++++++
T Consensus 245 ~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~ 324 (832)
T PLN03159 245 VLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVS 324 (832)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHH
Confidence 88888999999999999998888788999999999999999999999999999999999999998889999999999999
Q ss_pred hhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhc
Q 043446 320 GLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGK 399 (784)
Q Consensus 320 ~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~ 399 (784)
++|+|+||+++|+++|+..+.++..|..+++++++++++|+++++++++++|+|++|++.+|++|++||+++++++++++
T Consensus 325 ~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~ 404 (832)
T PLN03159 325 GLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGR 404 (832)
T ss_pred HHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999888765566667777888899999999999999999999999999999999999999999999
Q ss_pred cCCcCChhhHHHHHHHHHHHHHhHHHHHHhhccccccccccccccccCCCCCCCceEEEEeeCCCChhHHHHHHHhhCCC
Q 043446 400 DQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPT 479 (784)
Q Consensus 400 ~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~~~~~~~~~i~~~~~~~e~riLv~v~~~~~~~~li~l~~~l~~~ 479 (784)
+.|+++++.|++++++++++|.+++|++.++|+|++|+..|++|++|+.++++|+|+|+|+|++++++++++|++.++++
T Consensus 405 ~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t 484 (832)
T PLN03159 405 DQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT 484 (832)
T ss_pred hcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhHccCceEEEEEEEecCCCChHHHHHH
Q 043446 480 KRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICN 559 (784)
Q Consensus 480 ~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~ 559 (784)
+++|.++|++||+|+++|+++.++.|+.+++..+..++...++|++.++|+.|++++++++++++++++|+++||+|||+
T Consensus 485 ~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~ 564 (832)
T PLN03159 485 KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCN 564 (832)
T ss_pred CCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHH
Confidence 99999999999999999999999999876543332222235579999999999975258999999999999999999999
Q ss_pred HHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccccCcceeEEEeccCCcchH
Q 043446 560 LAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDR 639 (784)
Q Consensus 560 ~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~ 639 (784)
.|+|+++++||+||||+|+.||.+++.+..+|.+|++|+++|||||+|+||||..+.++.......+||+++|.||||||
T Consensus 565 ~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDR 644 (832)
T PLN03159 565 LAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDR 644 (832)
T ss_pred HHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchH
Confidence 99999999999999999999999888888999999999999999999999999764333334455779999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEeeecCCcCcccC---CCCCCCC-CcccccchhhhhhHHHHHHHHHhhccCCCceEEEEE
Q 043446 640 EALAYAWRMSEHPGNNLTVMRFIAAEEVEPAER---QSPDQNG-LTVETENDNQRQLDEEYINEFRMKIANDESVVYTEK 715 (784)
Q Consensus 640 ~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~e~ 715 (784)
|||+||.|||+|+++++||+||++.++.....+ ...++.. ++..+..++|+++||++++||++++..++++.|.|+
T Consensus 645 EALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~ 724 (832)
T PLN03159 645 EALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEK 724 (832)
T ss_pred HHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 999999999999999999999997543211100 0111111 222222267889999999999999988899999999
Q ss_pred ecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEEC
Q 043446 716 LANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 716 ~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvvq 784 (784)
.|+||.|++.++|+++++|||+||||+|+.+||+|+||+||+||||||+|||+|||+||.+++||||||
T Consensus 725 ~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQ 793 (832)
T PLN03159 725 VVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQ 793 (832)
T ss_pred ecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEE
Confidence 999999999999999989999999999887799999999999999999999999999999999999999
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-109 Score=965.60 Aligned_cols=750 Identities=53% Similarity=0.874 Sum_probs=677.3
Q ss_pred cccCCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHH
Q 043446 18 NMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVM 97 (784)
Q Consensus 18 ~~~~s~g~~~~~~~l~~~l~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~ 97 (784)
.+..+.|.|.|+||++|++|++++|+.++++++++++.++||+|||++++++++||++||+.+|.++.+.+.+||.++..
T Consensus 3 ~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~ 82 (769)
T KOG1650|consen 3 VKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMI 82 (769)
T ss_pred CccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcC-CCc---hhHHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHK-KNQ-GMN---QGTFVLFLGVAL 172 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~-~~~-~~~---~~~~al~lg~~l 172 (784)
.+++++.+|+.+++|+.|+|+|.+.++|.+|++..+++.++++|+..++.+...+.. ... .+. ...+-.++..++
T Consensus 83 ~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (769)
T KOG1650|consen 83 VLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQ 162 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888877743 211 111 112567888999
Q ss_pred hhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 173 SVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDT-STLASLWVILSGAAFVIFCVFVVRPAI 251 (784)
Q Consensus 173 s~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 251 (784)
+.|++|++++++.|+|++++++||+++++++++|+++|.++.+...+..... .+....|.+...+++.+++.++++|++
T Consensus 163 s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~ 242 (769)
T KOG1650|consen 163 SITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLM 242 (769)
T ss_pred hcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhH
Confidence 9999999999999999999999999999999999999999988887776544 244568888888899999999999999
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc-hhhhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHH
Q 043446 252 CWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIG-THSVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAI 329 (784)
Q Consensus 252 ~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G-~~~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~ 329 (784)
.|+.||+|++++.++.+...++..++.++.+++.++ .|+++|+|+.|+++|+ +|+++.+.+|++++.+++|+|+||+.
T Consensus 243 ~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~ 322 (769)
T KOG1650|consen 243 KWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAI 322 (769)
T ss_pred HHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888 8999999999999999 99999999999999999999999999
Q ss_pred hhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhH
Q 043446 330 SGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESF 409 (784)
Q Consensus 330 ~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~ 409 (784)
.|+++|+..+.. |......+....++|++++..++.++|+|++|++.+|++|++||.+++..++.+.+.++++++.|
T Consensus 323 ~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f 399 (769)
T KOG1650|consen 323 SGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGF 399 (769)
T ss_pred hccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchH
Confidence 999999988873 77778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccccccccccccccccCCCCCCCceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEE
Q 043446 410 AIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVL 489 (784)
Q Consensus 410 ~~lv~~~vv~t~i~~pl~~~l~~~~~~~~~~~~~~i~~~~~~~e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~L 489 (784)
++++++++++|.+++|++..+|+|.+++..|++|++++.+++.++|++.|+|++++.++++++++++.+++++|..++++
T Consensus 400 ~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~l 479 (769)
T KOG1650|consen 400 TVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYAL 479 (769)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887779999999
Q ss_pred EeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhHcc-CceEEEEEEEecCCCChHHHHHHHHHhcCccE
Q 043446 490 HLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHT-GCVTVQPLTAISPYSSMHEDICNLAEDKRVAL 568 (784)
Q Consensus 490 hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~-~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dl 568 (784)
|++|+.+|+.|++++|..++.+.+ +.....++++..+|+.|++.. .++.++++++++|+++||+|||..|.++++++
T Consensus 480 hlveL~~~~~~~li~h~~~~~~~~--~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~l 557 (769)
T KOG1650|consen 480 HLVELVGRATPLLISHKLRKNGRV--ESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSL 557 (769)
T ss_pred eeeecccccchhhhhhhhcccccc--ccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcE
Confidence 999999999999998987655322 112344678899999999853 57999999999999999999999999999999
Q ss_pred EEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccccCcceeEEEeccCCcchHHHHHHHHHH
Q 043446 569 IIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRM 648 (784)
Q Consensus 569 Iv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~~al~~a~~l 648 (784)
|++|+|++|+.++.+++.+..++++|++|+++|||+|+|++|||.......+.....++|++.|.||+||||||+++.||
T Consensus 558 iilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm 637 (769)
T KOG1650|consen 558 IILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRM 637 (769)
T ss_pred EEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHHHHHH
Confidence 99999999997778999999999999999999999999999998221111122336789999999999999999999999
Q ss_pred hcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHH-HhhccCCCceEEE-EEecCChHHHHHH
Q 043446 649 SEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEF-RMKIANDESVVYT-EKLANNGEETLAA 726 (784)
Q Consensus 649 a~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~-e~~v~~g~~~~~~ 726 (784)
++|+++++||+|+.++++..+ +.... ++++..|++..+++ +.....+.++.|. |+.+.++.|+.+.
T Consensus 638 ~~~~~v~lTVirf~~~~~~~~--~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~ 705 (769)
T KOG1650|consen 638 AENPRVTLTVIRFFPDESKYN--RKVLV----------EVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTAL 705 (769)
T ss_pred hhCCceEEEEEEeeccchhhc--ccccc----------hhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHH
Confidence 999999999999997554311 00012 55667777777777 5555556678888 6999999999999
Q ss_pred HHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEEC
Q 043446 727 IRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 727 i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvvq 784 (784)
++++.++|||++|||+++.+++.|+|+++|+||||||+|||.|+|+||..++||||+|
T Consensus 706 ~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvq 763 (769)
T KOG1650|consen 706 LRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQ 763 (769)
T ss_pred HHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEE
Confidence 9999889999999999999999999999999999999999999999999999999998
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=4e-47 Score=441.34 Aligned_cols=412 Identities=21% Similarity=0.320 Sum_probs=331.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhh
Q 043446 37 PLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGV 116 (784)
Q Consensus 37 ~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gl 116 (784)
+.+++++.+++.++.++..++||+|+|+++|||++|+++||+++|.++ +.+.++.++++|++++||.+|+
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGL 73 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGL 73 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999999999764 3457899999999999999999
Q ss_pred ccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 043446 117 EMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGR 196 (784)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~ 196 (784)
|+|++.+|+.+|+++.++..++++|+++++.++++++ .+| ..++++|.+++.||++++.++++|+|+++++.||
T Consensus 74 El~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g---~~~---~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 74 ELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLG---LRW---QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCH---HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 9999999999999999999999999988887766643 344 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCCCCchHHHH
Q 043446 197 IAMSSALINDMCAWVLLAFAIALGENDTS-TLAS-LWVILSGAAFVIF----CVFVVRPAICWMIRRTPEGESFSEFYVC 270 (784)
Q Consensus 197 l~l~~a~i~D~~~~~ll~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~----~~~v~~~~~~~l~~~~~~~~~~~e~~~~ 270 (784)
.+++.++++|++++++++++..+...+.. .... ...++..++++++ ..++.+|+.+|+.++ + .+|.+..
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~----~-~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS----G-LREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-CchHHHH
Confidence 99999999999999999987665543211 1111 2222222222222 233445555554433 2 5678888
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHH
Q 043446 271 LILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLL 350 (784)
Q Consensus 271 ~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~ 350 (784)
.++.++++++++++.+|+|+++|||++|+++++++++++++++++++. ++|+|+||+.+|+++|+..+.+ .|+.++.
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~-~lll~lFFi~vG~~id~~~l~~--~~~~il~ 299 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFK-GLLLGLFFIAVGMSIDFGTLLE--NPLRILI 299 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHhhhhccHHHHHH--HHHHHHH
Confidence 889999999999999999999999999999999889999999999996 9999999999999999987763 3444556
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 043446 351 VIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSI 430 (784)
Q Consensus 351 ~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l 430 (784)
++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.++.++++++ .|.+.+|++..+
T Consensus 300 ~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~-lS~~~tP~l~~~ 378 (621)
T PRK03562 300 LLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVA-LSMAATPLLLVL 378 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 6667889999999999999999999999999999999999999999999999999999999987654 566666777666
Q ss_pred ccccccccccccccccCCCCCCCceEEEEeeCCCChhHHHHHHHh
Q 043446 431 YKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEA 475 (784)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~~~~~e~riLv~v~~~~~~~~li~l~~~ 475 (784)
+++.......+.+. ++..++.+.|+++|-++.- ++.+.+.++.
T Consensus 379 ~~~~~~~~~~~~~~-~~~~~~~~~~vII~G~Gr~-G~~va~~L~~ 421 (621)
T PRK03562 379 LDRLEQSRTEEARE-ADEIDEQQPRVIIAGFGRF-GQIVGRLLLS 421 (621)
T ss_pred hhHHHHHHhhhccc-ccccccccCcEEEEecChH-HHHHHHHHHh
Confidence 65421100010111 1111223578999888765 5655555553
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=3.9e-46 Score=432.13 Aligned_cols=414 Identities=17% Similarity=0.243 Sum_probs=334.2
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhcc
Q 043446 39 FILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEM 118 (784)
Q Consensus 39 ~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~ 118 (784)
++..++++++++.+++.++||+|+|++++||++|+++||+++|..+ ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3567788899999999999999999999999999999999998753 235788999999999999999999
Q ss_pred ChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHH
Q 043446 119 DISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIA 198 (784)
Q Consensus 119 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~ 198 (784)
|++.+|+.++.....+..++++|+++++++++.++ +++ ..++++|++++.||++++.++++|+|+++++.||++
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLG---WSL---MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC---CCH---HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHH
Confidence 99999999888877788888889888887766543 343 678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHH
Q 043446 199 MSSALINDMCAWVLLAFAIALGEN---DTSTL-----ASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVC 270 (784)
Q Consensus 199 l~~a~i~D~~~~~ll~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~ 270 (784)
+++++++|+.+++++.++..+... +..+. ...+.++..++++++..++.|++.+|+.++.++.+ .+|.+..
T Consensus 151 l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l 229 (558)
T PRK10669 151 IGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTL 229 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHH
Confidence 999999999999988877654421 11111 12344556666777778888999999999886655 6788888
Q ss_pred HHHHHHHHHHHH-HHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHH
Q 043446 271 LILTGVMISGFI-TDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITL 349 (784)
Q Consensus 271 ~~l~~~l~~~~~-a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~ 349 (784)
.++++++++++. ++.+|+|+++|||++|+++++++.++++.+...++. ++|+|+||+.+|+++|+..+.+ .+...+
T Consensus 230 ~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~-~~f~plFFv~~G~~~d~~~l~~--~~~~~~ 306 (558)
T PRK10669 230 SVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLR-DAFAVLFFVSVGMLFDPMILIQ--QPLAVL 306 (558)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHH-HHHHHHHHHHhhhhcCHHHHHH--HHHHHH
Confidence 888888887764 689999999999999999999888888888777775 8899999999999999987763 344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHh
Q 043446 350 LVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTS 429 (784)
Q Consensus 350 ~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~ 429 (784)
.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.+++++++++.++|++.++
T Consensus 307 ~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 307 ATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999988888877777766666
Q ss_pred hcccccccccccc----ccccC---CCCCCCceEEEEeeCCCChhHHHHHH
Q 043446 430 IYKPARRFLPYKR----RTIQK---SKPDSEFRVLVCVHTPRNVPTIINLL 473 (784)
Q Consensus 430 l~~~~~~~~~~~~----~~i~~---~~~~~e~riLv~v~~~~~~~~li~l~ 473 (784)
..+..++....++ +..++ .+++.+.|+++|-+++- +..+.+.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~-G~~la~~L 436 (558)
T PRK10669 387 LERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRV-GSLLGEKL 436 (558)
T ss_pred hhHHHHHhhhccccccccccccccccccccCCCEEEECCChH-HHHHHHHH
Confidence 5432221111111 11111 12234679999888665 45444433
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=6e-46 Score=431.05 Aligned_cols=411 Identities=18% Similarity=0.312 Sum_probs=327.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc
Q 043446 38 LFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE 117 (784)
Q Consensus 38 ~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle 117 (784)
.++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|.++ +.+.+..++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999764 23467899999999999999999
Q ss_pred cChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 043446 118 MDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRI 197 (784)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l 197 (784)
+|++.+|+.+|+++.++..++++|+++++.+.+++ +.+| ..++++|++++.||++++.++++|+|+.+++.||+
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~---g~~~---~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT---DFSW---QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCH---HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 99999999999999999999999988777665543 3344 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 043446 198 AMSSALINDMCAWVLLAFAIALGENDTSTLASL---WVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILT 274 (784)
Q Consensus 198 ~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~ 274 (784)
+++..+++|+.++++++++..+.........+. ..++..++++++..++.+|+.+|+.+. +.+|.++..++.
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~ 223 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALL 223 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHH
Confidence 999999999999999988766654322211111 111112222222233444544444332 256788899999
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHH
Q 043446 275 GVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIIL 354 (784)
Q Consensus 275 ~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~ 354 (784)
++++++++++.+|+|+++|||++|+++++++++++++++++++. ++|+|+||+.+|+++|+..+.+ .|..++.++++
T Consensus 224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~-~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~ 300 (601)
T PRK03659 224 LVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFK-GLLLGLFFISVGMALNLGVLYT--HLLWVLISVVV 300 (601)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHH
Confidence 99999999999999999999999999999889999999999996 9999999999999999988764 45556667777
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhhccc-
Q 043446 355 ACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKP- 433 (784)
Q Consensus 355 ~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~- 433 (784)
.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++.++++ |.+.+|++..+++|
T Consensus 301 ~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~~~ 379 (601)
T PRK03659 301 LVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLIDKW 379 (601)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhHHH
Confidence 8899999999999999999999999999999999999999999999999999999999666655 55667777777665
Q ss_pred -cccccccccccccCCCCCCCceEEEEeeCCCChhHHHHHHH
Q 043446 434 -ARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLE 474 (784)
Q Consensus 434 -~~~~~~~~~~~i~~~~~~~e~riLv~v~~~~~~~~li~l~~ 474 (784)
.+++....+....+...+.+.|+++|-++.- ++.+.+.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (601)
T PRK03659 380 LARRLNGPEEEDEKPWVEDDKPQVIIVGFGRF-GQVIGRLLM 420 (601)
T ss_pred HHHhhccccccccccccccccCCEEEecCchH-HHHHHHHHH
Confidence 3332211110001111133578999887665 555555554
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=398.81 Aligned_cols=379 Identities=27% Similarity=0.508 Sum_probs=325.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhh
Q 043446 37 PLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGV 116 (784)
Q Consensus 37 ~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gl 116 (784)
...+.++.++++++.+.+.++||+|+|+++||+++|+++||..++.. .+..+.++.++++|++++||.+|+
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999544432 346789999999999999999999
Q ss_pred ccChhHHHhchhh-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhH
Q 043446 117 EMDISAIRRTGKK-ALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELG 195 (784)
Q Consensus 117 e~d~~~l~~~~~~-~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g 195 (784)
|+|++++||++|+ ....+..++.+|+.++....+. . ++.++ ..++++|.+++.||.++++++++|+|..+++.|
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~g~~~---~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g 150 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLG-I-LGLSL---IAALFLGAALALSSTAIVLKILMELGLLKTREG 150 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH-H-hccCh---HHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999 8888888888888887655443 1 23344 669999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 043446 196 RIAMSSALINDMCAWVLLAFAIALGENDTSTLA-SLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILT 274 (784)
Q Consensus 196 ~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~ 274 (784)
++++++++++|+.+++++++...+...+..... .+.......++.++..+..+++.+++.|+..+.+ .+|..+..++.
T Consensus 151 ~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~-~~e~~~~~~l~ 229 (397)
T COG0475 151 QLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTE-SSELFILFVLL 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHH
Confidence 999999999999999999999988766544322 3445555666666666656788888888875443 67899999999
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCCcch-hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHH
Q 043446 275 GVMISGFITDAIGTHSVFGAFVFGLVIPNGPLG-LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVII 353 (784)
Q Consensus 275 ~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~-~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~ 353 (784)
+++++++++|.+|+|.++|||+||+++++.+.+ ++++++++++.+++|+|+||+.+|+++|+..+.+ .+..+..++.
T Consensus 230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~~~ 307 (397)
T COG0475 230 LVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLLVA 307 (397)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHHHH
Confidence 999999999999999999999999999997777 7999999999977999999999999999999885 4555778888
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhhccc
Q 043446 354 LACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKP 433 (784)
Q Consensus 354 ~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~ 433 (784)
+..++|.+++++.++..|.+++++...|+.+.++|+++++.++.+.. +.++++.+...+.+++++|.+.+++.+.+++.
T Consensus 308 ~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 308 LAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR 386 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999998887 67888888888787777777766666666543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.9e-40 Score=384.20 Aligned_cols=381 Identities=18% Similarity=0.184 Sum_probs=313.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHh
Q 043446 36 LPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVG 115 (784)
Q Consensus 36 l~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~G 115 (784)
+..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.++ .++.+..+.++++|+++++|..|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~--------~~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ--------FDNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc--------cCcHHHHHHHHHHHHHHHHHcCc
Confidence 3467889999999999999999999999999999999999999998653 12456889999999999999999
Q ss_pred hccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCc-cCChh
Q 043446 116 VEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKL-INTEL 194 (784)
Q Consensus 116 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~-~~s~~ 194 (784)
+|+|++.+|+.+++++.+++.++++|++++...++++ ++.+| ..++++|+++++||++++.++++|+|+ +++++
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l--~g~~~---~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWL--LGLDW---LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERV 150 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCH---HHHHHHhhhhccCchHHHHHHHhccCCCcchhH
Confidence 9999999999999999999999999987755554444 23344 779999999999999999999999995 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 043446 195 GRIAMSSALINDMCAWVLLAFAIALGENDTS--TLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLI 272 (784)
Q Consensus 195 g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~ 272 (784)
++++.++|.+||.++++++.++..+...+.. .+..+..++..+++.++.+++++++..|+.+|.+.. .++.+..++
T Consensus 151 ~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~ 228 (562)
T PRK05326 151 ASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILV 228 (562)
T ss_pred HhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHH
Confidence 9999999999999999988887776544432 223344555666677777888899999999887421 345678888
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHH
Q 043446 273 LTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLV 351 (784)
Q Consensus 273 l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~ 351 (784)
+++++++++++|.+|.|+++|+|++|+++++ .+..+...+++++...+++.|+||+++|+.+|++.+.+ ..+..+++.
T Consensus 229 l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i~ 307 (562)
T PRK05326 229 LAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLLA 307 (562)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999998 43334444555555568999999999999999987763 233333444
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCC-hhhHHHHHHHHHHHHHhHHHHHHhh
Q 043446 352 IILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLD-DESFAIMVIVAVVMTGIITPIVTSI 430 (784)
Q Consensus 352 ~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~-~~~~~~lv~~~vv~t~i~~pl~~~l 430 (784)
+++.+++|+++++++.+.+++++||+.+++| .++||+++++++..+...++.+ +..|.++.+++++++.+.++.+..+
T Consensus 308 ~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~ 386 (562)
T PRK05326 308 LFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA 386 (562)
T ss_pred HHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence 5567889999999999999999999999999 5899999999999999888886 4566777677777777766666665
Q ss_pred ccc
Q 043446 431 YKP 433 (784)
Q Consensus 431 ~~~ 433 (784)
.++
T Consensus 387 a~~ 389 (562)
T PRK05326 387 ARK 389 (562)
T ss_pred HHH
Confidence 543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=4.2e-40 Score=366.02 Aligned_cols=373 Identities=30% Similarity=0.542 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 043446 45 LVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIR 124 (784)
Q Consensus 45 lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~ 124 (784)
++++.+.+.+.++||+++|.+++|+++|+++||.+++..+ |. ....+.++++|+.+++|.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~-------~~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE-------PD--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc-------ch--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3445566667789999999999999999999999888543 11 35788999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHH
Q 043446 125 RTGKKALAIAVGGMTLPFVI-GGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSAL 203 (784)
Q Consensus 125 ~~~~~~~~ia~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~ 203 (784)
|++|+.+.+++.++++|+.+ ++.+++++...++++ ..++++|.++++||++++.++++|.+..+++.+++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~ 150 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLFILGLSW---AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESV 150 (380)
T ss_dssp -------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhccchhhh---HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhch
Confidence 99999999999999999988 766664321133343 67999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCchHHHHHHHHHHHHHHHH
Q 043446 204 INDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEG-ESFSEFYVCLILTGVMISGFI 282 (784)
Q Consensus 204 i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~-~~~~e~~~~~~l~~~l~~~~~ 282 (784)
+||+++++++.+.......+.. ...+.....++..+..+.+.+....|+.++..+. ++.++.+..+++++++..+++
T Consensus 151 i~d~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (380)
T PF00999_consen 151 INDIIAIILLSILISLAQASGQ--SSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGL 228 (380)
T ss_dssp TTTTTTTTTT----------------------------------------------------------------------
T ss_pred hhccchhhhhhhhhhhhccccc--ccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccc
Confidence 9999999999888776621111 1122222222222233333344444444443222 246778899999999999999
Q ss_pred HHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccc-cchhHHHHHHHHHHHHHHHHH
Q 043446 283 TDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIH-GTSTWMITLLVIILACAGKIA 361 (784)
Q Consensus 283 a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~ 361 (784)
+|.+|.|+++|+|++|+++++.+.++++.++++++.++++.|+||+.+|+++|++.+. +...|.....+++..+++|++
T Consensus 229 a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~ 308 (380)
T PF00999_consen 229 AEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFI 308 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhc
Confidence 9999999999999999999998888889999999999999999999999999988874 224566677777778899999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 043446 362 GTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIY 431 (784)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~ 431 (784)
++++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.++.++.++++++.+.|+.++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 309 GVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp --------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred eeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998888887777776666554
No 9
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-35 Score=288.35 Aligned_cols=381 Identities=21% Similarity=0.318 Sum_probs=306.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHH
Q 043446 33 DYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLF 112 (784)
Q Consensus 33 ~~~l~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF 112 (784)
+|+.|+ +-.+..-+.++++++.+.+|+|+|+.+||+++|++.||.--|... +......++++|++++||
T Consensus 2 ~h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmF 70 (408)
T COG4651 2 HHDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMF 70 (408)
T ss_pred CCCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHH
Confidence 344443 344555678889999999999999999999999999998666532 344566899999999999
Q ss_pred HHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCC
Q 043446 113 LVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINT 192 (784)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s 192 (784)
-+|++.+.+++...+.-+.--++.++.+-...+...++. .||++ ...+.+|.++|..|+.+..|.++|.+++++
T Consensus 71 gvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~---lgws~---~~glvfGlaLS~aSTVvllraLqEr~lidt 144 (408)
T COG4651 71 GVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSL---LGWSF---GTGIVFGLALSVASTVVLLRALEERQLIDT 144 (408)
T ss_pred hcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHH---cCCCc---ccceeeeehhhhHHHHHHHHHHHHhccccc
Confidence 999999999998766544333444444444444444444 45555 447899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---c-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 043446 193 ELGRIAMSSALINDMCAWVLLAFAIALGENDTS---T-L----ASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESF 264 (784)
Q Consensus 193 ~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~---~-~----~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 264 (784)
+-||++.+--+++|+..++.+....+++..-.. . . ...+...+...|..++.++.|++..|+..+..... .
T Consensus 145 ~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-s 223 (408)
T COG4651 145 QRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-S 223 (408)
T ss_pred cCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-c
Confidence 999999999999999998888877665542111 1 1 12345568888999999999999999999975443 6
Q ss_pred chHHHHHHHHHHHHHHH-HHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccch
Q 043446 265 SEFYVCLILTGVMISGF-ITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTS 343 (784)
Q Consensus 265 ~e~~~~~~l~~~l~~~~-~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~ 343 (784)
.|.+...+++++++.++ .++.+|+|+.+|||++|+++++++..++..+..-++. +.|.-+||+.+||.+|+..+.+ +
T Consensus 224 rElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLr-daFaVlFFvsVGmlf~P~~l~~-~ 301 (408)
T COG4651 224 RELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLR-DAFAVLFFVSVGMLFDPMILIQ-Q 301 (408)
T ss_pred HHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHH-HHHHHHHHHHhhhhcCcHHhhc-c
Confidence 78999999999998776 6679999999999999999999888888888887886 7888899999999999987764 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhH
Q 043446 344 TWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGII 423 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~ 423 (784)
.+ .+...+++.+.+|-+..+...+.++.|.|.++.++.++.+.|+++++++..+.+.+++++. .--++++.-+.+++.
T Consensus 302 pl-~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~-gr~LvlagailsIl~ 379 (408)
T COG4651 302 PL-AVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEA-GRDLVLAGAILSILL 379 (408)
T ss_pred hH-HHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHH-HHHHHHHHHHHHHHH
Confidence 34 3555566777899999999999999999999999999999999999999999999999854 444556666778889
Q ss_pred HHHHHhhccccc
Q 043446 424 TPIVTSIYKPAR 435 (784)
Q Consensus 424 ~pl~~~l~~~~~ 435 (784)
.|+.....++.+
T Consensus 380 nPllf~~~dr~~ 391 (408)
T COG4651 380 NPLLFALLDRYQ 391 (408)
T ss_pred hHHHHHHHHHHh
Confidence 999887766543
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=7.7e-35 Score=308.34 Aligned_cols=270 Identities=26% Similarity=0.436 Sum_probs=231.5
Q ss_pred HHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhch
Q 043446 48 VTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTG 127 (784)
Q Consensus 48 ~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~ 127 (784)
+++.+.+.++||+|+|++++++++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567789999999999999999999999999988754 335799999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHH
Q 043446 128 KKALAIAVGGMTLP-FVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALIND 206 (784)
Q Consensus 128 ~~~~~ia~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D 206 (784)
|++..++..++++| +.+++.+++++ ++++ ..++++|+++++||++++.++++|+|+.+++.|+++++++++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D 145 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLL---GLAL---GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQD 145 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---CCCH---HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHH
Confidence 99999999999999 66666566554 3343 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 043446 207 MCAWVLLAFAIALGENDTST-LASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDA 285 (784)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~ 285 (784)
+++++++.+..........+ ....+.+...+++.++.+.+.++..+|+.|+.++.+ ..|.+...++.+++..++++|.
T Consensus 146 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~la~~ 224 (273)
T TIGR00932 146 IAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELR-PSELFTAGSLLLMFGSAYFADL 224 (273)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHH
Confidence 99999999887766432222 123344444455555666778888889988876654 4578888999999999999999
Q ss_pred hchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhcccc
Q 043446 286 IGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTD 335 (784)
Q Consensus 286 ~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d 335 (784)
+|.|+++|+|++|+++++.+.++++.++++++. ++|.|+||+++|+++|
T Consensus 225 ~g~s~~lgaf~aGl~~~~~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 225 LGLSMALGAFLAGVVLSESEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred hCCcHHHHHHHHHHHHcCCchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 999999999999999999666788999999999 9999999999999986
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=3.4e-30 Score=294.22 Aligned_cols=367 Identities=15% Similarity=0.179 Sum_probs=271.5
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHHHHHHHhHc-ccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHH
Q 043446 25 VWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLK-PFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMA 103 (784)
Q Consensus 25 ~~~~~~~l~~~l~~~l~~l~lil~~~~l~~~l~~-rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~ 103 (784)
.|..-++-+.++ .+..++..+++..++..+++ |+.+|..+.++++|+++||.++|.++... + .......++ ++
T Consensus 2 ~w~~l~~~~~~l--~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~--g~~d~i~le-It 75 (810)
T TIGR00844 2 IWEQLEVTKAHV--AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W--GNTDSITLE-IS 75 (810)
T ss_pred Ccccccccchhh--HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c--ccchHHHHH-HH
Confidence 365555555443 34445555555556666665 99999999999999999999988654110 0 001223344 99
Q ss_pred HHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHH
Q 043446 104 NVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARI 183 (784)
Q Consensus 104 ~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~i 183 (784)
++++.+++|.+|++++++.+++.|+.++.+++.++.+++++++++++++.. +.+| ..++++|+++++|+|+.+..+
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-GL~~---~~ALLLGAILAPTDPVLAssV 151 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-GLNF---PASLLMGACITATDPVLAQSV 151 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCH---HHHHHHHhhhcCCcHHHHHHH
Confidence 999999999999999999999999999999999999999998888877642 2333 789999999999999888888
Q ss_pred HH---hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccch--hH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 184 LA---ELKLINTELGRIAMSSALINDMCAWVLLAFAIALGEND--TSTL--AS-LWVILSGAAFVIFCVFVVRPAICWMI 255 (784)
Q Consensus 184 l~---el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~l~ 255 (784)
++ ..+ ++.++..++.+++.+||.++++++.+.+.+.... ...+ .+ ...++..++++++++++++.+..|+.
T Consensus 152 ~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 152 VSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred Hhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 334 7899999999999999999998887666554321 1111 11 23344444555555556666665655
Q ss_pred HHcCCCC-CCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CcchhH-HHHHHHHHHHhhhhHHHHHHhhc
Q 043446 256 RRTPEGE-SFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGLT-LIEKLEDFVSGLLLPLFFAISGL 332 (784)
Q Consensus 256 ~~~~~~~-~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~~~~~-l~~~l~~~~~~~~~plfF~~~G~ 332 (784)
++..+.. ...+.++.+.++++++++.+++.+|.++++++|+||+++.+ ....++ -...++.....++..++|+++|+
T Consensus 231 ~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa 310 (810)
T TIGR00844 231 RFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGS 310 (810)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5442111 13456777888889999999999999999999999999998 332222 23346677778889999999999
Q ss_pred ccccccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHhcchhHHHHHHHHhhccCCc
Q 043446 333 KTDISSIHG----TSTWMITLLVIILACAGKIAGTLLVSLMY--QMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKV 403 (784)
Q Consensus 333 ~~d~~~l~~----~~~~~~~~~~~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~ 403 (784)
.+++..+.. ...|..+++.+++.++.|+.++++...+. ..+|+|++++|| .++||..+++++.++.+.+.
T Consensus 311 ~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 311 ILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred hhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 998876642 13466667777777888988888764444 468999999999 99999999999998877654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=7.6e-29 Score=283.45 Aligned_cols=367 Identities=16% Similarity=0.143 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 043446 44 TLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAI 123 (784)
Q Consensus 44 ~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l 123 (784)
.++++.+.....+++|+++|.+++++++|+++||..++... +. +. +.+-.+++..++|..|+++|++.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~-~~---~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PL-DR---EIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CC-CH---HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34455566778889999999999999999999986433210 00 11 233457899999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHH
Q 043446 124 RRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSAL 203 (784)
Q Consensus 124 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~ 203 (784)
|++++.+..+++.++++|++++....+++. +.+| ..++++|+++++|||+++.+++++.+ .++++.+++.++|+
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~--~l~~---~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESl 146 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWIL--GIPL---ALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESL 146 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccH---HHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhh
Confidence 999999999999999999888766666542 3344 78999999999999999999999988 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHH
Q 043446 204 INDMCAWVLLAFAIALGEN-DTST-LASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGF 281 (784)
Q Consensus 204 i~D~~~~~ll~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~ 281 (784)
+||..+++++.++..+..+ +..+ ......++..++.+++.+++++.+..|+.|+..+ .+.....+++++++++++
T Consensus 147 lND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~---~~~~~~~l~l~~~~~~y~ 223 (525)
T TIGR00831 147 LNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID---DPLVEIALTILAPFAGFL 223 (525)
T ss_pred hcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHH
Confidence 9999999999988877653 2222 2223344444445556666667777777655332 234667888899999999
Q ss_pred HHHHhchhhhHHHHHHHhhcCC-Ccc---h---hHHHHHHHHHHHhhhhHHHHHHhhccccccccccc---h-h-----H
Q 043446 282 ITDAIGTHSVFGAFVFGLVIPN-GPL---G---LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGT---S-T-----W 345 (784)
Q Consensus 282 ~a~~~G~~~~lgaf~aGl~l~~-~~~---~---~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~---~-~-----~ 345 (784)
++|.+|.|+++++|++|+++++ .+. . +...+.++.....++.+++|+++|++++....... . . +
T Consensus 224 lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~ 303 (525)
T TIGR00831 224 LAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVIL 303 (525)
T ss_pred HHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 9999999999999999999998 322 1 22234567777789999999999999874211100 0 0 1
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHH--HH-----hCCCchhHHHHHHHhcchhHHHHHHHHhhcc---CC-------cCC
Q 043446 346 MI---TLLVIILACAGKIAGTLLVS--LM-----YQMPIREGVTLGLLMNTKGLVEMIVLNVGKD---QK-------VLD 405 (784)
Q Consensus 346 ~~---~~~~~~~~~~~K~~~~~l~~--~~-----~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~---~~-------~i~ 405 (784)
.. .+++.......|++.++... ++ .+.+||+.+.++| .++||.++++++..... .| .+-
T Consensus 304 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~ 382 (525)
T TIGR00831 304 ALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELV 382 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHH
Confidence 00 11222233445655443321 11 2468999999999 89999999998864321 11 111
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhc
Q 043446 406 DESFAIMVIVAVVMTGIITPIVTSIY 431 (784)
Q Consensus 406 ~~~~~~lv~~~vv~t~i~~pl~~~l~ 431 (784)
.-.+.+++++.++.+...||+++++-
T Consensus 383 ~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 383 FLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 22344555555555556666776653
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-26 Score=257.64 Aligned_cols=379 Identities=18% Similarity=0.209 Sum_probs=292.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc
Q 043446 38 LFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE 117 (784)
Q Consensus 38 ~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle 117 (784)
..+++..+++..+.....+.+|++.|.+..+++.|++.||.+++.... . ....-+.+..+.+..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~-------~-~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP-------D-LELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc-------c-ccCChHHHHHHHHHHHHHHhHhc
Confidence 456778888889999999999999999999999999999988876541 1 11112233389999999999999
Q ss_pred cChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 043446 118 MDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRI 197 (784)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l 197 (784)
+|.+.+||+++.+..+++.+++++.+......+++.+ +.++ ..++.+|+++|+|||.++.+++++.+ .++++.++
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-~i~~---~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~i 152 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-GIPL---AAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTI 152 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhH---HHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHH
Confidence 9999999999999999999999998777777776633 2332 78999999999999999999999987 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-Ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCchHHHHHHHH
Q 043446 198 AMSSALINDMCAWVLLAFAIALGEND-TST-LASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEG-ESFSEFYVCLILT 274 (784)
Q Consensus 198 ~l~~a~i~D~~~~~ll~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~-~~~~e~~~~~~l~ 274 (784)
+.++|++||..+++++.+...+...+ ..+ ......++..++.++.++++++.+..|+.++..+. .........+.+.
T Consensus 153 L~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~ 232 (429)
T COG0025 153 LEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLL 232 (429)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 99999999999999999988877633 322 22334444445555555566666666666665221 1134567889999
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCC------Ccch-hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHH
Q 043446 275 GVMISGFITDAIGTHSVFGAFVFGLVIPN------GPLG-LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMI 347 (784)
Q Consensus 275 ~~l~~~~~a~~~G~~~~lgaf~aGl~l~~------~~~~-~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~ 347 (784)
.++..+.++|.+|.|++++++++|+...+ .+.. +...+.++...+.++.-+.|++.|++++...+.. ..+..
T Consensus 233 ~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~-~~~~~ 311 (429)
T COG0025 233 LAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA-LGLLG 311 (429)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhHHH
Confidence 99999999999999999999999997741 2222 4445557777878899999999999999887764 23566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCchhHHHHHHHhcchhHHHHHHHHhhccC-C-----cCChhhHHHHHHH
Q 043446 348 TLLVIILACAGKIAGTLLVSLMYQ------MPIREGVTLGLLMNTKGLVEMIVLNVGKDQ-K-----VLDDESFAIMVIV 415 (784)
Q Consensus 348 ~~~~~~~~~~~K~~~~~l~~~~~~------~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~-~-----~i~~~~~~~lv~~ 415 (784)
+++++...+++|++++++..+..+ .+++|+++++| -++||.++++++...... . .+-.-.+..++++
T Consensus 312 ~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~S 390 (429)
T COG0025 312 LLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFS 390 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHH
Confidence 788888899999999999999853 79999999999 899999999999765532 1 2222344445555
Q ss_pred HHHHHHhHHHHHHhhc
Q 043446 416 AVVMTGIITPIVTSIY 431 (784)
Q Consensus 416 ~vv~t~i~~pl~~~l~ 431 (784)
.++.+...+|+.+++.
T Consensus 391 l~v~g~t~~~l~~~~~ 406 (429)
T COG0025 391 LLVQGLTLPPLAKKLE 406 (429)
T ss_pred HHHHhhhHHHHHHHhc
Confidence 5555555666666544
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.1e-26 Score=239.87 Aligned_cols=350 Identities=19% Similarity=0.204 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc
Q 043446 38 LFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE 117 (784)
Q Consensus 38 ~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle 117 (784)
.+++.-.++++.+.+.+.+..|+|.|..+-++..|++.|--++|.++ -++.+.-..++++++++++|..|+.
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~--------fdNy~~Ay~vg~lALaiILfdgG~~ 78 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE--------FDNYPFAYMVGNLALAIILFDGGFG 78 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc--------cCccHHHHHHHHHHHHHHhhcCccC
Confidence 34444446777888889999999999999999999999999998765 1356688899999999999999999
Q ss_pred cChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 043446 118 MDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRI 197 (784)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l 197 (784)
++++.+|...++++.++..+++++-.+....++++.. .+| .+++++|++..+|+.+.+..+|.+.+ +|.+++.+
T Consensus 79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~--l~w---le~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~st 152 (574)
T COG3263 79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLN--LDW---LEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAST 152 (574)
T ss_pred CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc--cHH---HHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhh
Confidence 9999999999999999999999997777666766643 455 88999999999999999999999988 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHH
Q 043446 198 AMSSALINDMCAWVLLAFAIALGENDTS--TLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTG 275 (784)
Q Consensus 198 ~l~~a~i~D~~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~ 275 (784)
+.-+|.-||-+++++...++.+...+.+ ++..+..++...+++++.++..+.+..|+++|..- .+..+..++++.
T Consensus 153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la~ 229 (574)
T COG3263 153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALAG 229 (574)
T ss_pred EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHHH
Confidence 9999999999999888777766655533 23344456778888888999999999999999722 355788999999
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHhhcCCCc--chhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHH
Q 043446 276 VMISGFITDAIGTHSVFGAFVFGLVIPNGP--LGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVII 353 (784)
Q Consensus 276 ~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~--~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~ 353 (784)
.++.+.+++.+|.|++++.+++|+.+.|.| .++.+.+..+.+. ++..-+.|...|+...++++.. ...+.+++.+.
T Consensus 230 ~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~t-wlaQI~MFlvLGLLvtPsql~~-iavPailL~l~ 307 (574)
T COG3263 230 GLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLA-WLAQILMFLVLGLLVTPSQLLP-IAIPAILLSLW 307 (574)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHH-HHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHHH
Confidence 999999999999999999999999999944 4556667777776 8888899999999999988874 45666778888
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChh
Q 043446 354 LACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDE 407 (784)
Q Consensus 354 ~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~ 407 (784)
+.+++|++++|+...-++.+++|.++++| -+-||.++++++....-.|.=+.+
T Consensus 308 mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~ 360 (574)
T COG3263 308 MIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENAR 360 (574)
T ss_pred HHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccce
Confidence 89999999999999999999999999999 799999999999876655544433
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.95 E-value=4.1e-25 Score=252.30 Aligned_cols=381 Identities=14% Similarity=0.160 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHc-cc-CCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHH
Q 043446 37 PLFILQLTLVVVTTRLLVLVLK-PF-RQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLV 114 (784)
Q Consensus 37 ~~~l~~l~lil~~~~l~~~l~~-rl-~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~ 114 (784)
|..+.-..++..++.+...+.. +. ++|..+..++.|+++|+...+... ....-+ + -+.+-.+.+..++|..
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~-~~~~~l---~---~~lf~~~~LPpIlFe~ 80 (559)
T TIGR00840 8 PYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH-IDPPTL---D---SSYFFLYLLPPIVLDA 80 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC-CccCCc---C---HHHHHHHHHHHHHHHH
Confidence 3333334444444445544443 34 599999999999999986433211 000001 1 1344456777899999
Q ss_pred hhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcC---CCchhHHHHHHHHHHhhccHHHHHHHHHhcCcc
Q 043446 115 GVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHK-KNQ---GMNQGTFVLFLGVALSVTAFPVLARILAELKLI 190 (784)
Q Consensus 115 Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~-~~~---~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~ 190 (784)
|+++|.+.++++++.++.+|+.+++++.++.....+++.. .+. ++ ....++++|+++|+|||+.+.+++++.+ .
T Consensus 81 g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l-~~~~allfGAiiSaTDPVAVlai~~~~~-v 158 (559)
T TIGR00840 81 GYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDI-GLLDNLLFGSLISAVDPVAVLAVFEEYH-V 158 (559)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CHHHHHHHhHHhcCCchHHHHHHHHhcC-C
Confidence 9999999999999999999999999997666655554432 111 11 1278999999999999999999999999 8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 043446 191 NTELGRIAMSSALINDMCAWVLLAFAIALGEND--TSTLA----SLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESF 264 (784)
Q Consensus 191 ~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 264 (784)
+.++..++.++|++||.++++++.++..+...+ ..... ....+....+.+++++++++.+..++.|+....
T Consensus 159 ~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~--- 235 (559)
T TIGR00840 159 NEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI--- 235 (559)
T ss_pred CcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 999999999999999999999998888765421 11111 111222222235566667777777777776432
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC------CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccc
Q 043446 265 SEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN------GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISS 338 (784)
Q Consensus 265 ~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~------~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~ 338 (784)
+.....+++++++++++++|.+|.|++++++++|+++.+ .+..+.-.+.++...+.++..+.|+++|+.+....
T Consensus 236 ~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~ 315 (559)
T TIGR00840 236 RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN 315 (559)
T ss_pred chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 245677888999999999999999999999999999965 22222334456666678889999999999763321
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChh-----
Q 043446 339 IHGTSTWMITLLVIILACAGKIAGTLLVSLM------YQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDE----- 407 (784)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~----- 407 (784)
.. ..|..+++.+++.++.|+++++...+. .+.+++|.+.++| .++||.++++++....+.+.-..+
T Consensus 316 -~~-~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~ 392 (559)
T TIGR00840 316 -HE-WNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTT 392 (559)
T ss_pred -hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHH
Confidence 11 245555555667778999998877654 3479999999999 899999999988765443322223
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhcc
Q 043446 408 SFAIMVIVAVVMTGIITPIVTSIYK 432 (784)
Q Consensus 408 ~~~~lv~~~vv~t~i~~pl~~~l~~ 432 (784)
++.++++++++....++|+++++.-
T Consensus 393 t~~VVl~TvlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 393 TLVVVFFTVIFQGGTIKPLVEVLKV 417 (559)
T ss_pred HHeeehHHHHHHHhhHHHHHHHhCC
Confidence 2333344555555566788877643
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.88 E-value=5.7e-22 Score=213.75 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=177.8
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.|||+|++.++....+++.+..++. ..+.+++++|+++......+....... .....+...++.++.++......
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 78 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQ--RNGGKITAFLPIYDFSYEMTTLLSPDE---REAMRQGVISQRTAWIREQAKPY 78 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHH--hcCCCEEEEEeccCchhhhhcccchhH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999998883 456789999988533221110000000 00000000011122222222111
Q ss_pred HccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCC
Q 043446 534 QHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGL 613 (784)
Q Consensus 534 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~ 613 (784)
.. .+++++...... .+++++|++.|+++++||||||+|++....+. .+|++.+++++++||||+++.++.
T Consensus 79 ~~-~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~~~~- 148 (305)
T PRK11175 79 LD-AGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVKDQD- 148 (305)
T ss_pred hh-cCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEecccc-
Confidence 12 567777766532 48899999999999999999999987544333 489999999999999999974322
Q ss_pred CCCccccccCcceeEEEeccCCcch-------HHHHHHHHHHhcCC-CeEEEEEEeeecCCcCcccCCCCCCCCCccccc
Q 043446 614 NGSTRLAANQVTHNIAVLFFGGPDD-------REALAYAWRMSEHP-GNNLTVMRFIAAEEVEPAERQSPDQNGLTVETE 685 (784)
Q Consensus 614 ~~~~~~~~~~~~~~I~v~~~gg~~~-------~~al~~a~~la~~~-~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (784)
....++|++++||++.+ +.|+++|.++|+.. +++++++|+.+......... ... ....+.
T Consensus 149 --------~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~-~~~---~~~~~~ 216 (305)
T PRK11175 149 --------WPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIE-LPE---FDPSVY 216 (305)
T ss_pred --------cCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhcccc-ccc---cchhhH
Confidence 12357899999998753 67999999999998 99999999985322100000 000 000000
Q ss_pred chhhhhhHHHHHHHHHhhccCCCceEEEEEecCChHHHHHHHHh-ccCCccEEEEcccCCCCCccccCcCccCCCCcccc
Q 043446 686 NDNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRS-MDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGA 764 (784)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~-~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~ 764 (784)
.+..++..++.++++.++.. +...+..+..|.......+. .+.++||+|||+|++ +|+.+|- +|.
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~----~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~------~~~~~~l----lGS 282 (305)
T PRK11175 217 NDAIRGQHLLAMKALRQKFG----IDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGR------TGLSAAF----LGN 282 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CChhheeeccCCHHHHHHHHHHHhCCCEEEECCCcc------CCCccee----ecc
Confidence 01111222234455544332 11112233334332233332 245689999999998 6776663 899
Q ss_pred chhhhhcCCCCCcccEEEEC
Q 043446 765 IGDLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 765 igd~las~d~~~~~svLvvq 784 (784)
.++-++.+ .+++||||.
T Consensus 283 ~a~~v~~~---~~~pVLvv~ 299 (305)
T PRK11175 283 TAEHVIDH---LNCDLLAIK 299 (305)
T ss_pred hHHHHHhc---CCCCEEEEc
Confidence 99999988 889999983
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.83 E-value=8.4e-19 Score=177.26 Aligned_cols=346 Identities=15% Similarity=0.148 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCccc-ccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhH
Q 043446 44 TLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTA-FANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISA 122 (784)
Q Consensus 44 ~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~-~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~ 122 (784)
+.+.+.+..--++-+|+-+...+.-.+.|+++||++++...+ ... +.......++.+-+-.-.|..++|+....
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wg-----n~d~it~ei~RvvLcvqvfava~eLPr~Y 94 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWG-----NKDYITYEISRVVLCVQVFAVAMELPRAY 94 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcccc-----CcchhhhhhhhhhHhHHHHHHHHhccHHH
Confidence 344455555556677788888888899999999999987631 111 11234566788888899999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhc---CccCChhHHHHH
Q 043446 123 IRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAEL---KLINTELGRIAM 199 (784)
Q Consensus 123 l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el---~~~~s~~g~l~l 199 (784)
+.++|+..+.+-+.-++.-+++.+...|.+.+ +.+ ...++.+++++++|+|.....+..+. |..+.++..++.
T Consensus 95 ~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p-~ln---f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~ 170 (467)
T KOG4505|consen 95 MLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP-NLN---FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc---HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence 99999999988888777777777777777754 112 26799999999999988888887754 346778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc---chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCchHHHHHHHH
Q 043446 200 SSALINDMCAWVLLAFAIALGENDTS---TLAS-LWVILSGAAFVIFCVFVVRPAICWMIRRT-PEGESFSEFYVCLILT 274 (784)
Q Consensus 200 ~~a~i~D~~~~~ll~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~~~e~~~~~~l~ 274 (784)
+++..||.++++++.+.+.+...... ...+ ...++.-..|+.+.+.+++.+.+..+|.. .++--..|+++.+-++
T Consensus 171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vv 250 (467)
T KOG4505|consen 171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVV 250 (467)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999999999999887776543222 1111 12333444444444444444444444332 1122356899999999
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCC-CcchhHHHH-HHHHHHHhhhhHHHHHHhhccccccccccc----hhHHHH
Q 043446 275 GVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGLTLIE-KLEDFVSGLLLPLFFAISGLKTDISSIHGT----STWMIT 348 (784)
Q Consensus 275 ~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~~~~~l~~-~l~~~~~~~~~plfF~~~G~~~d~~~l~~~----~~~~~~ 348 (784)
+++.|+.+.+.+|.+..+-.|.||++++. ..+..+..+ ++..+.+.++.-.||++.|..+|++.+... ..|..+
T Consensus 251 l~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlv 330 (467)
T KOG4505|consen 251 LALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLV 330 (467)
T ss_pred HHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHH
Confidence 99999999999999999999999999998 666555543 677777777888899999999999887643 356655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCchhHHHHHHHhcchhHHHHHHHHhhc
Q 043446 349 LLVIILACAGKIAGTLLVSLMYQ--MPIREGVTLGLLMNTKGLVEMIVLNVGK 399 (784)
Q Consensus 349 ~~~~~~~~~~K~~~~~l~~~~~~--~~~~~~~~lg~~m~~rG~~~l~~~~~~~ 399 (784)
++-+.+.+.-|+-.+++.-.+.. .+|||++++|+ .+|.|.-++..+..+.
T Consensus 331 ilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 331 ILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 55444444455555544333322 48999999999 9999999988886654
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.1e-18 Score=191.49 Aligned_cols=386 Identities=15% Similarity=0.152 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHcccC---CChhHHHHHHHHhhcccccCCccccc-----ccccCcccHHHHHHHHHHHHHH
Q 043446 38 LFILQLTLVVVTTRLLVLVLKPFR---QPRVISEIIGGVLLGPSVLGRNTAFA-----NTIFPLRSVMVLETMANVGLLY 109 (784)
Q Consensus 38 ~~l~~l~lil~~~~l~~~l~~rl~---~P~iv~~ilaGiilGP~~lg~~~~~~-----~~lfp~~~~~~l~~l~~igl~~ 109 (784)
.-++-++++++++.+.++++++-| +|.-+.-++.|+++|-.......... ...|.+ +.+-.+-+--
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPp 108 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPP 108 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhch
Confidence 335556677788889999999999 99999999999999954322111100 011111 1222233445
Q ss_pred HHHHHhhccChhHHHhchhhHHHHHHHHHHHHH-HHHHHHHHHHhh-hcCCCchhHHHHHHHHHHhhccHHHHHHHHHhc
Q 043446 110 FLFLVGVEMDISAIRRTGKKALAIAVGGMTLPF-VIGGCFSFILHK-KNQGMNQGTFVLFLGVALSVTAFPVLARILAEL 187 (784)
Q Consensus 110 llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el 187 (784)
++|..|.+++.+.++|+.......++.|..+.. +++.++.++... ...++. ...++.+|+++|.|||+.+..+++|+
T Consensus 109 iif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~-f~d~L~fGaliSATDPVtvLaIfnel 187 (575)
T KOG1965|consen 109 IIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLS-FKDCLAFGALISATDPVTVLAIFNEL 187 (575)
T ss_pred hhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhccccccccc-HHHHHHHhhHhcccCchHHHHHHHHh
Confidence 889999999999999999999999999888874 445544444222 222332 27899999999999999999999999
Q ss_pred CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 043446 188 KLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLAS---LWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESF 264 (784)
Q Consensus 188 ~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 264 (784)
+ .+..+-.++.+++++||.++++++..+......+.+.+.. +..++........++...+.+...+.|+..-++ .
T Consensus 188 ~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~-~ 265 (575)
T KOG1965|consen 188 G-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR-T 265 (575)
T ss_pred C-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 9 8899999999999999999999999888776655443322 333333333333344444444444455543332 4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC------CcchhHHHHHHHHHHHhhhhHHHHHHhhcc-cccc
Q 043446 265 SEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN------GPLGLTLIEKLEDFVSGLLLPLFFAISGLK-TDIS 337 (784)
Q Consensus 265 ~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~------~~~~~~l~~~l~~~~~~~~~plfF~~~G~~-~d~~ 337 (784)
+.....+.+.+....+++||.+|+++++..++.|+.+++ ++..+.-.+.+..+...+..-+-|+++|+. ++..
T Consensus 266 ~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~ 345 (575)
T KOG1965|consen 266 PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQ 345 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence 567788899999999999999999999999999999997 233344455566666677788889999963 3333
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CchhHHHHHHHhcchhHHHHHHHHhhc-cC-----
Q 043446 338 SIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQM----------PIREGVTLGLLMNTKGLVEMIVLNVGK-DQ----- 401 (784)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~----------~~~~~~~lg~~m~~rG~~~l~~~~~~~-~~----- 401 (784)
...- .....+....++.+++|..-++..+.+.+. +.++-..++|.-..||.++++++.--. +.
T Consensus 346 k~~~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~ 424 (575)
T KOG1965|consen 346 KHVY-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGG 424 (575)
T ss_pred ceee-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccc
Confidence 3221 112345666677788898888777776543 334455666655579999998885322 11
Q ss_pred CcCChhhHHHHHHHHHHHHHhHHHHHHhhccc
Q 043446 402 KVLDDESFAIMVIVAVVMTGIITPIVTSIYKP 433 (784)
Q Consensus 402 ~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~ 433 (784)
..+-.....++++.+++....+.|+++++...
T Consensus 425 q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~ 456 (575)
T KOG1965|consen 425 QTIFTTTLVVVLFTVLVFGGSTKPMLSYLMIS 456 (575)
T ss_pred cEEEEeeeeeeeeeeeeeCCccHHHHHHhccc
Confidence 23333444555577777777899999987643
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.73 E-value=5e-15 Score=160.61 Aligned_cols=295 Identities=18% Similarity=0.272 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhH-------HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISA-------IRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGV 170 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~-------l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~ 170 (784)
..+.+.+.-..++.|.+|+|+..+. .||..-+ ..-++.|+++|.++-..+.+ +.+ ...--+|+
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~~n~-----~~~----~~~~GW~I 131 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYVAVNL-----AGG----GALRGWAI 131 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHHHHhC-----Cch----hhhhhhhh
Confidence 4556666667789999999995543 3333332 45677888888744333221 100 11222333
Q ss_pred HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 043446 171 ALSVTAFPVLARILAELKL-INTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRP 249 (784)
Q Consensus 171 ~ls~Ts~~vv~~il~el~~-~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 249 (784)
-+.||.+.+..++..+|. .+++++..+++.|++||+.++++++++. ++.-+ ..+.......+ ++.
T Consensus 132 -p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~--~~~L~~a~~~~--~~l----- 197 (423)
T PRK14853 132 -PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELN--LEALLLALVPL--ALF----- 197 (423)
T ss_pred -hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCC--HHHHHHHHHHH--HHH-----
Confidence 344999999999999874 4899999999999999999998888765 22212 22222211111 111
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C-----------cchhHHHHHHHHH
Q 043446 250 AICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-G-----------PLGLTLIEKLEDF 317 (784)
Q Consensus 250 ~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~-----------~~~~~l~~~l~~~ 317 (784)
|+.++.+ .++...++++. +.+.+..+..|+|+.+|+|++|+++|. . +..++++++++++
T Consensus 198 ---~~l~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~ 268 (423)
T PRK14853 198 ---WLLVQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPL 268 (423)
T ss_pred ---HHHHHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHH
Confidence 2223321 23344455443 355668889999999999999999994 1 2246789999999
Q ss_pred HHhhhhHHH-HHHhhccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhc
Q 043446 318 VSGLLLPLF-FAISGLKTDI-SSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMN 385 (784)
Q Consensus 318 ~~~~~~plf-F~~~G~~~d~-~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~ 385 (784)
+..+++|+| |+..|.++|. ..+.+...-+..+.+++..+++|++|.+..++.. +++|++-..+|++-+
T Consensus 269 V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~G 348 (423)
T PRK14853 269 SAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAG 348 (423)
T ss_pred HHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHH
Confidence 999999999 9999999986 4342111113566777888899999988877753 468899888888444
Q ss_pred chhHHHHHHHHhhcc-CCcCChhhHHHHHHHHHHHHHhHHHH
Q 043446 386 TKGLVEMIVLNVGKD-QKVLDDESFAIMVIVAVVMTGIITPI 426 (784)
Q Consensus 386 ~rG~~~l~~~~~~~~-~~~i~~~~~~~lv~~~vv~t~i~~pl 426 (784)
.-=++++.+++.+++ .....++.-..+.+.+++ +.+.+.+
T Consensus 349 IGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~-s~~~G~~ 389 (423)
T PRK14853 349 IGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLI-AALLASV 389 (423)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 344788888888884 332223333344455544 3444443
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.50 E-value=2e-13 Score=127.68 Aligned_cols=131 Identities=21% Similarity=0.346 Sum_probs=102.3
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhH
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ 534 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~ 534 (784)
|||+|++++++.+.+++.+..+++. .+.+++++|+++.+..... +. . +...++.++.++.+.....
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~-----~---~~~~~~~~~~~~~~~~~~~ 66 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQ-----L---EVNVQRARKLLRQAERIAA 66 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----ch-----h---HHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999953 6789999999987554322 10 0 0012345566666666655
Q ss_pred ccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 535 HTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 535 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+ .++++++.+..+ .++.++|++.|++.++|+||||+|+++...+. .+|+++++|++++||||+|+
T Consensus 67 ~-~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 67 S-LGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred h-cCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 5 677888888775 47999999999999999999999988655433 38999999999999999985
No 21
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.44 E-value=2.5e-11 Score=129.45 Aligned_cols=270 Identities=21% Similarity=0.309 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA 171 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ 171 (784)
..+...+.-..++.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+..--.....+| |+-
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~~~~~~~~GW---------~IP 122 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNANDPITREGW---------AIP 122 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheecCCCcccCcc---------ccc
Confidence 4555666667789999999998887753 33333 44566778888644332221000000122 111
Q ss_pred HhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 172 LSVTAFPVLARILAEL-KLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPA 250 (784)
Q Consensus 172 ls~Ts~~vv~~il~el-~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 250 (784)
+ .||.+-..-++.=+ +..+..+...+++-+++||+.++++.+++.+ +. ....+.......+. +
T Consensus 123 ~-ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~--i~~~~L~~a~~~~~-~-------- 186 (373)
T TIGR00773 123 A-ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----ND--LSMAALLVAAVAIA-V-------- 186 (373)
T ss_pred c-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CC--CCHHHHHHHHHHHH-H--------
Confidence 1 24444444444333 2378888999999999999999887776542 22 12223322222111 1
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Ccc----hhHHHHHHHHHHHhhhhHH
Q 043446 251 ICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPL----GLTLIEKLEDFVSGLLLPL 325 (784)
Q Consensus 251 ~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~~----~~~l~~~l~~~~~~~~~pl 325 (784)
-++.+|.. .++...+..+.+ ++.+.+ ...|+|+.+|+|++|+++|. .+. .+++++.+++.+..+++|+
T Consensus 187 -l~~~~~~~----v~~~~~y~~lgv-llW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPl 259 (373)
T TIGR00773 187 -LAVLNRCG----VRRLGPYMLVGV-ILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPL 259 (373)
T ss_pred -HHHHHHcC----CchhhHHHHHHH-HHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12334432 223333443333 333333 79999999999999999998 333 3455666667798889999
Q ss_pred H-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHHHHHH
Q 043446 326 F-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLVEMIV 394 (784)
Q Consensus 326 f-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l~~ 394 (784)
| |+..|.++|...+.. ...+....+++..+++|++|++..++.. +.+|++-..+|++-+.-=++++.+
T Consensus 260 FAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI 338 (373)
T TIGR00773 260 FAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFI 338 (373)
T ss_pred HHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999998655432 2233467788888999999999888763 468899888888444333788888
Q ss_pred HHhhcc
Q 043446 395 LNVGKD 400 (784)
Q Consensus 395 ~~~~~~ 400 (784)
.+.+.+
T Consensus 339 ~~LAf~ 344 (373)
T TIGR00773 339 ASLAFG 344 (373)
T ss_pred HHHhcC
Confidence 888884
No 22
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.41 E-value=1.7e-13 Score=149.88 Aligned_cols=373 Identities=15% Similarity=0.167 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHhHcccC--CChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhH
Q 043446 45 LVVVTTRLLVLVLKPFR--QPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISA 122 (784)
Q Consensus 45 lil~~~~l~~~l~~rl~--~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~ 122 (784)
++..++.+.--+..+++ .|.-...|+.|+++|-...+.-..-...+.| ..-.+- -+--++|-+|+-|.-+.
T Consensus 49 l~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s--~vFFly-----LLPPIvlDAGYfMp~r~ 121 (670)
T KOG1966|consen 49 LVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLES--DVFFLY-----LLPPIVLDAGYFMPNRA 121 (670)
T ss_pred HHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccc--cchhhh-----hcCHHHhcccccCccHH
Confidence 33344444444444544 6888888999999996654432110001111 100010 11227899999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHH
Q 043446 123 IRRTGKKALAIAVGGMTLPFVIGGCFSFILHK---KNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAM 199 (784)
Q Consensus 123 l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l 199 (784)
+..+...++..|+.|.+.-.+.-.+.-|.+.. ++.+. .....++.|...|..||+.+..+.+|.+ .|.-+--++.
T Consensus 122 Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~-glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VF 199 (670)
T KOG1966|consen 122 FFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSI-GLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVF 199 (670)
T ss_pred HHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-hHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeee
Confidence 99999999999999999864433333333332 44332 2367889999999999999999999999 8988888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 043446 200 SSALINDMCAWVLLAFAIALGENDTSTLA------SLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLIL 273 (784)
Q Consensus 200 ~~a~i~D~~~~~ll~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l 273 (784)
+++++||.+.++++-++..+..-++.... .+..+....+.+++++.+++.+.....|.+.+ .+-...++++
T Consensus 200 GESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif 276 (670)
T KOG1966|consen 200 GESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIF 276 (670)
T ss_pred hhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhh
Confidence 99999999999999888776654322211 11111111223333344444444444444432 3445678899
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHhhcCC---Ccch---hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHH
Q 043446 274 TGVMISGFITDAIGTHSVFGAFVFGLVIPN---GPLG---LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMI 347 (784)
Q Consensus 274 ~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~---~~~~---~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~ 347 (784)
.+..+++..+|.+++|++++..+.|+.+.. .... ..-.+..-...+..-.++.|++.|.++--. .. .++|..
T Consensus 277 ~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h-~wd~~F 354 (670)
T KOG1966|consen 277 LLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NH-HWDFAF 354 (670)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-cc-eeehhh
Confidence 999999999999999999999999999986 2222 223344444455677788899999886433 22 245666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCchhHHHHHHHhcchhHHHHHHHHhhccCC-----cCChhhHHHHHHHH
Q 043446 348 TLLVIILACAGKIAGTLLVSLMYQ------MPIREGVTLGLLMNTKGLVEMIVLNVGKDQK-----VLDDESFAIMVIVA 416 (784)
Q Consensus 348 ~~~~~~~~~~~K~~~~~l~~~~~~------~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~-----~i~~~~~~~lv~~~ 416 (784)
+.+-++.+++.|++++...+++.+ ++..|.+.++. =+-||.+++.+...--... ..=..++.++.+++
T Consensus 355 i~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTV 433 (670)
T KOG1966|consen 355 ICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTV 433 (670)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccceEeeeeEEEeeee
Confidence 777777888899999888888764 56777777766 4668887776654433222 22223444455666
Q ss_pred HHHHHhHHHHHHhhcc
Q 043446 417 VVMTGIITPIVTSIYK 432 (784)
Q Consensus 417 vv~t~i~~pl~~~l~~ 432 (784)
.+..+..-|+++++--
T Consensus 434 flQGiTIkplvk~L~V 449 (670)
T KOG1966|consen 434 FLQGITIKPLVKFLKV 449 (670)
T ss_pred eecccchHHHHHHHcc
Confidence 6667777899998754
No 23
>PRK15456 universal stress protein UspG; Provisional
Probab=99.40 E-value=1.1e-12 Score=124.59 Aligned_cols=137 Identities=11% Similarity=0.101 Sum_probs=91.2
Q ss_pred ceEEEEeeCCC--ChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHH
Q 043446 454 FRVLVCVHTPR--NVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 531 (784)
Q Consensus 454 ~riLv~v~~~~--~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 531 (784)
.|||+|+++++ +...+++.+..++.. . .+++++|+++....... .....+...+.+..++..++.++.+..
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASLSL----HRFAADVRRFEEHLQHEAEERLQTMVS 75 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccccc----cccccchhhHHHHHHHHHHHHHHHHHH
Confidence 47999999984 789999999998743 3 48999999865322110 000000011101011222233332222
Q ss_pred hhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 532 YEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 532 ~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
.... .++++++.+..+ ++.++|++.|++.++||||||.|++. ..+. .+||++++|++++||||+|+
T Consensus 76 ~~~~-~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 76 HFTI-DPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HhCC-CCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEEe
Confidence 2122 467788888776 89999999999999999999999853 3332 48999999999999999985
No 24
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.38 E-value=2e-12 Score=123.43 Aligned_cols=140 Identities=9% Similarity=0.170 Sum_probs=94.7
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhH
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ 534 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~ 534 (784)
+||+|++++++...+++.+..++. ..+.+++++|+++.+..... ............++.++..++.++.+....+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~--~~~~~l~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLA--TKGQTIVLVHVHPPITSIPS---SSGKLEVASAYKQEEDKEAKELLLPYRCFCS 75 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhcc--CCCCcEEEEEeccCcccCCC---CccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999884 35788999999875322110 0000000000000011223344443333222
Q ss_pred ccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHH-HHHHHhhccCC--CceEEE
Q 043446 535 HTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFR-MVNQNLLANAP--CSVGIL 608 (784)
Q Consensus 535 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~-~~~~~vl~~ap--c~V~il 608 (784)
. .++.+++....+ .++++.|+++|++.++|+||||.|++.+..+.+ +| |+.++|++++| |||+|+
T Consensus 76 ~-~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 76 R-KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred h-cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEEEE
Confidence 2 567777777654 479999999999999999999999886554433 66 69999999999 999995
No 25
>PRK15005 universal stress protein F; Provisional
Probab=99.33 E-value=5.6e-12 Score=119.97 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred ceEEEEeeCCCC--hhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHH
Q 043446 454 FRVLVCVHTPRN--VPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 531 (784)
Q Consensus 454 ~riLv~v~~~~~--~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 531 (784)
.+||+|++++++ ...+++.+..++. ..+.+++++|+++............. ...+.. .+..++..+.++.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~--~~~~~l~ll~v~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~l~~ 74 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAK--IDDAEVHFLTVIPSLPYYASLGLAYS---AELPAM---DDLKAEAKSQLEE 74 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHh--ccCCeEEEEEEEccCccccccccccc---ccchHH---HHHHHHHHHHHHH
Confidence 379999999987 4688888888873 46788999999975332111000000 000000 0111222223333
Q ss_pred hhHcc--CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 532 YEQHT--GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 532 ~~~~~--~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+.+.. .+++++..+..+ ++.+.|++.|++.++||||||.|+ .+..+ ..+||++++|++++||||+|+
T Consensus 75 ~~~~~~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~------~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 75 IIKKFKLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITT------YLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHHhCCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchh------eeecchHHHHHHhCCCCEEEe
Confidence 33221 456677777665 889999999999999999999984 33333 348999999999999999985
No 26
>PRK09982 universal stress protein UspD; Provisional
Probab=99.25 E-value=2.7e-11 Score=115.06 Aligned_cols=134 Identities=9% Similarity=0.124 Sum_probs=87.2
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.|||+|++++++...+++.+..++ +..+++++++|+++......+.. ... ......+..++..++. ++...
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~---l~~~~ 74 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGI--YFP--ATEDILQLLKNKSDNK---LYKLT 74 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhh--hcc--chHHHHHHHHHHHHHH---HHHHH
Confidence 479999999999999999999988 44778999999986432111100 000 0000000001112222 22222
Q ss_pred HccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 534 QHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 534 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+......++..+..+ ++++.|++.|++.++||||||.| +.+.+ ..++ ++++|+++++|||+|+
T Consensus 75 ~~~~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 75 KNIQWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred HhcCCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHHH-HHHHHHhcCCCCEEEe
Confidence 221223456666666 89999999999999999999977 43222 2254 9999999999999996
No 27
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.24 E-value=3.6e-11 Score=114.47 Aligned_cols=133 Identities=8% Similarity=0.061 Sum_probs=87.3
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.|||+|++++++...+++.+..++. ..+.+++++|+.+........ .. ........ ++..++..+.++.+.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~---~~-~~~~~~~~---~~~~~~~~~~l~~~~ 74 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMAR--PYNAKVSLIHVDVNYSDLYTG---LI-DVNLGDMQ---KRISEETHHALTELS 74 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHH--hhCCEEEEEEEccChhhhhhh---hh-hcchHHHH---HHHHHHHHHHHHHHH
Confidence 4799999999999999999998884 356889999994321111000 00 00000000 111223333444444
Q ss_pred HccCceEEE-EEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 534 QHTGCVTVQ-PLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 534 ~~~~~v~v~-~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+. .++.+. .....+ ++++.|++.|++.++||||||.|++ + . + .+||++++|++++||||+++
T Consensus 75 ~~-~~~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~----~-~---~-~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 75 TN-AGYPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQD----F-W---S-KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred Hh-CCCCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCccc----H-H---H-HHHHHHHHHHhhCCCCEEEe
Confidence 44 455543 333344 8999999999999999999999952 1 1 1 27899999999999999997
No 28
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.21 E-value=7.3e-11 Score=109.23 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=91.0
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhH
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ 534 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~ 534 (784)
|||+|+++++....+++.+..++. +.+.+++++|+++.... . . .++.++.++.+.+..+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~~--~-------------~----~~~~~~~l~~~~~~~~ 59 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLAD--RLKAPWYVVYVETPRLN--R-------------L----SEAERRRLAEALRLAE 59 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHH--HhCCCEEEEEEecCccc--c-------------C----CHHHHHHHHHHHHHHH
Confidence 689999999999999999999984 36778999999863211 0 0 1223445555554444
Q ss_pred ccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccC-CCceEEE
Q 043446 535 HTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANA-PCSVGIL 608 (784)
Q Consensus 535 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~a-pc~V~il 608 (784)
+ .++++ .+..+ .++.+.|++.+++.++|+||||+|+++...+. .+||+.++|+++| ||||.|.
T Consensus 60 ~-~~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~------~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 60 E-LGAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL------FRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred H-cCCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH------hcccHHHHHHHhCCCCeEEEe
Confidence 3 34443 33334 57899999999999999999999987655443 4999999999999 9999985
No 29
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.12 E-value=1.2e-10 Score=108.95 Aligned_cols=133 Identities=19% Similarity=0.288 Sum_probs=91.4
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHH----
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF---- 529 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~---- 529 (784)
.|||+|++++++...+++.+..++. ..+.+++++|+.+.............. . ....+......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~--~~~~~i~~l~v~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~ 70 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAK--RSGAEITLLHVIPPPPQYSFSAAEDEE-----S-----EEEAEEEEQARQAEA 70 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHH--HHTCEEEEEEEEESCHCHHHHHHHHHH-----H-----HHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHH--hhCCeEEEEEeeccccccccccccccc-----c-----ccccchhhhhhhHHH
Confidence 4899999999999999999888883 467899999999866544321100000 0 00001100000
Q ss_pred HHhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 530 ENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 530 ~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
...... ...........+ +..++|++.+++.++|+||||.|++....+.+ +|++.+++++++||||+|+
T Consensus 71 ~~~~~~-~~~~~~~~~~~~---~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 71 EEAEAE-GGIVIEVVIESG---DVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHH-TTSEEEEEEEES---SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred HHHhhh-ccceeEEEEEee---ccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 111111 344445555444 89999999999999999999999875555443 9999999999999999996
No 30
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.12 E-value=1.5e-08 Score=109.96 Aligned_cols=293 Identities=21% Similarity=0.280 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA 171 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ 171 (784)
..+.+.+.-..++.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+.. +.+ ..--+|+-
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~-----~~~-----~~~GWgIP 137 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA-----DTP-----SQHGFGIP 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec-----CCC-----ccCccccc
Confidence 4556667777789999999998877753 23333 44566778888643332211 110 01112222
Q ss_pred HhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 172 LSVTAFPVLARILAELK-LINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPA 250 (784)
Q Consensus 172 ls~Ts~~vv~~il~el~-~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 250 (784)
++ ||.+...-++.=+| ..+..+...+++-|++||+.++++.+++.. + .....+......++.+ .
T Consensus 138 mA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~--~i~~~~L~~a~~~~~~-l------- 202 (438)
T PRK14856 138 MA-TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----T--NLKFAWLLGALGVVLV-L------- 202 (438)
T ss_pred cH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----C--CCcHHHHHHHHHHHHH-H-------
Confidence 22 55555555544333 267788899999999999999888776542 2 1223333333222211 1
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Ccc-----------------------
Q 043446 251 ICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPL----------------------- 306 (784)
Q Consensus 251 ~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~~----------------------- 306 (784)
++.+|.. .+....++.+.+++.. .....|+|+.++..+.|+++|. .+.
T Consensus 203 --~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T PRK14856 203 --AVLNRLN----VRSLIPYLLLGVLLWF--CVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALL 274 (438)
T ss_pred --HHHHHcC----CccccHHHHHHHHHHH--HHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccccc
Confidence 2233321 2223344444444433 3447899999999999999996 221
Q ss_pred ---------------------hhHHHHHHHHHHHhhhhHHH-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 043446 307 ---------------------GLTLIEKLEDFVSGLLLPLF-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTL 364 (784)
Q Consensus 307 ---------------------~~~l~~~l~~~~~~~~~plf-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~ 364 (784)
.+++++.+.+.+..+.+|+| |...|..++...... .-+..+.+++..++||.+|.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI~ 352 (438)
T PRK14856 275 TKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGIF 352 (438)
T ss_pred ccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHHH
Confidence 13355667777888999999 888999987542221 123456677778889999988
Q ss_pred HHHHHh----------CCCchhHHHHHHHhcchhHHHHHHHHhhccC--CcCChhhHHHHHHHHHHHHHhHHHH
Q 043446 365 LVSLMY----------QMPIREGVTLGLLMNTKGLVEMIVLNVGKDQ--KVLDDESFAIMVIVAVVMTGIITPI 426 (784)
Q Consensus 365 l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~--~~i~~~~~~~lv~~~vv~t~i~~pl 426 (784)
..++.. +++|++-..+|++-+.-=++++.+++.+++. ....++.-..+.+.++++ .+.+.+
T Consensus 353 ~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~ls-ai~G~~ 425 (438)
T PRK14856 353 LITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLIS-GIIGAL 425 (438)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 887763 4688998888884333337888888888843 323334444444555443 344433
No 31
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.10 E-value=3.7e-10 Score=107.74 Aligned_cols=140 Identities=13% Similarity=0.173 Sum_probs=88.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccC
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIAN 706 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (784)
+|+||+||++.++.|+++|.++|+..+++++++|++++....... ... .-...+..++.++..++.++++.+....
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSS--SGK--LEVASAYKQEEDKEAKELLLPYRCFCSR 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCC--ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999999999998643211000 000 0000000022233445666666654432
Q ss_pred CCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccc-cchhhhhcCCCCCc--ccEEE
Q 043446 707 DESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELG-AIGDLLASSDFAST--VSVLV 782 (784)
Q Consensus 707 ~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG-~igd~las~d~~~~--~svLv 782 (784)
..+.+....+..+......++.. +.+.||||||+|++ +|+.++ -+| .+.+.+... .+ ++|||
T Consensus 77 -~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~------~~l~~~----~~gssva~~Vi~~---a~~~c~Vlv 142 (146)
T cd01989 77 -KGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD------NHFSMK----FKKSDVASSVLKE---APDFCTVYV 142 (146)
T ss_pred -cCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC------Cceeec----ccCCchhHHHHhc---CCCCceEEE
Confidence 23444444443222222333322 44589999999998 677654 267 699999987 67 99999
Q ss_pred EC
Q 043446 783 VQ 784 (784)
Q Consensus 783 vq 784 (784)
||
T Consensus 143 v~ 144 (146)
T cd01989 143 VS 144 (146)
T ss_pred Ee
Confidence 96
No 32
>PRK10116 universal stress protein UspC; Provisional
Probab=99.09 E-value=6.6e-10 Score=105.41 Aligned_cols=134 Identities=10% Similarity=0.093 Sum_probs=88.5
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.+||++++.+++...+++.+..++. ..+.+++++|+++.+..... .... ..+... +...++..+.++.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~--~~~~---~~~~~~---~~~~~~~~~~l~~~~ 73 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIAR--PVNGKISLITLASDPEMYNQ--FAAP---MLEDLR---SVMQEETQSFLDKLI 73 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHH--HhCCEEEEEEEccCcccchh--hhHH---HHHHHH---HHHHHHHHHHHHHHH
Confidence 5899999999999999999998884 35678999999865321111 0000 000000 111122233344444
Q ss_pred HccCceEEE-EEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEe
Q 043446 534 QHTGCVTVQ-PLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILV 609 (784)
Q Consensus 534 ~~~~~v~v~-~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv 609 (784)
+. .+++.. ..... .+..+.|++.|++.++||||||.|++.+... ++++.++|++++||||+|+.
T Consensus 74 ~~-~~~~~~~~~~~~---G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 74 QD-ADYPIEKTFIAY---GELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred Hh-cCCCeEEEEEec---CCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEe
Confidence 43 444433 33333 5889999999999999999999997643321 34789999999999999973
No 33
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.08 E-value=3.8e-08 Score=105.37 Aligned_cols=270 Identities=21% Similarity=0.275 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA 171 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ 171 (784)
..+...+.-..++.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-+.+.. .. + . ..--+|+-
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~-~-~-----~~~GWgIP 129 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NN-P-E-----TLRGWAIP 129 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CC-C-c-----ccCccccc
Confidence 4455666667789999999998877753 33333 44567778888644333221 10 0 0 00111222
Q ss_pred HhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 172 LSVTAFPVLARILAEL-KLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPA 250 (784)
Q Consensus 172 ls~Ts~~vv~~il~el-~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 250 (784)
+ .||.+-..-++.=+ +..+..+...+++-+++||+.++++.+++. ++. ....+......++.+ .
T Consensus 130 m-ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY----t~~--i~~~~L~~a~~~~~~-l------- 194 (389)
T PRK09560 130 A-ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY----TSD--LSLPALALAAIAIAV-L------- 194 (389)
T ss_pred c-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCC--CCHHHHHHHHHHHHH-H-------
Confidence 2 25555555555433 236788889999999999999988777654 221 222333332221111 1
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Ccc------hhHHHHHHHHHHHhhhh
Q 043446 251 ICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPL------GLTLIEKLEDFVSGLLL 323 (784)
Q Consensus 251 ~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~~------~~~l~~~l~~~~~~~~~ 323 (784)
++.+|.. .+....+..+.+++.. .....|+|+.++..+.|+.+|. .+. .+++++++++.++.+.+
T Consensus 195 --~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~Il 266 (389)
T PRK09560 195 --FLLNRLG----VTKLTPYLIVGAILWF--AVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAIL 266 (389)
T ss_pred --HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhH
Confidence 2223321 2223344444444333 3347899999999999999997 221 35678889999988889
Q ss_pred HHH-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHHHH
Q 043446 324 PLF-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLVEM 392 (784)
Q Consensus 324 plf-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l 392 (784)
|+| |...|..++-..+.+ ..-+....+++..+++|.+|.++.++.. +.+|++-..+|++-+.-=++++
T Consensus 267 PlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 345 (389)
T PRK09560 267 PLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSL 345 (389)
T ss_pred HHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999 788888884322321 1123455677778889999988887763 4688998888884443447888
Q ss_pred HHHHhhcc
Q 043446 393 IVLNVGKD 400 (784)
Q Consensus 393 ~~~~~~~~ 400 (784)
.++..+..
T Consensus 346 FIa~LAF~ 353 (389)
T PRK09560 346 FIGSLAFG 353 (389)
T ss_pred HHHHhhcC
Confidence 88888883
No 34
>PRK09982 universal stress protein UspD; Provisional
Probab=99.06 E-value=4.9e-10 Score=106.43 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=85.9
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhc
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKI 704 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (784)
+++|++|+||+++++.|++.|.++|+..+++++++|++++........ ... ...+..+..++..++.+++++++.
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGI-YFP----ATEDILQLLKNKSDNKLYKLTKNI 77 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhh-hcc----chHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999986422100000 000 000000223334445666666654
Q ss_pred cCCCceEEEEEecCChHHHHHHHHh-ccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEE
Q 043446 705 ANDESVVYTEKLANNGEETLAAIRS-MDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVV 783 (784)
Q Consensus 705 ~~~~~v~~~e~~v~~g~~~~~~i~~-~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvv 783 (784)
.. ..+.+ .+..|.+....++. .+.++||||||+| + +|+++| +| +.+-+... ++++||||
T Consensus 78 ~~-~~~~~---~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~------~~~~~~-----~~-va~~V~~~---s~~pVLvv 137 (142)
T PRK09982 78 QW-PKTKL---RIERGEMPETLLEIMQKEQCDLLVCGHH-H------SFINRL-----MP-AYRGMINK---MSADLLIV 137 (142)
T ss_pred CC-CcceE---EEEecCHHHHHHHHHHHcCCCEEEEeCC-h------hHHHHH-----HH-HHHHHHhc---CCCCEEEe
Confidence 32 22332 22334333333332 2456899999986 5 677777 46 88888887 89999998
Q ss_pred C
Q 043446 784 Q 784 (784)
Q Consensus 784 q 784 (784)
.
T Consensus 138 ~ 138 (142)
T PRK09982 138 P 138 (142)
T ss_pred c
Confidence 3
No 35
>PRK15005 universal stress protein F; Provisional
Probab=99.02 E-value=3.2e-09 Score=100.95 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=88.0
Q ss_pred ceeEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEeeecCCcC-cccCCCCCCCCCcccccchhhhhhHHHHHHHHH
Q 043446 625 THNIAVLFFGGPD--DREALAYAWRMSEHPGNNLTVMRFIAAEEVE-PAERQSPDQNGLTVETENDNQRQLDEEYINEFR 701 (784)
Q Consensus 625 ~~~I~v~~~gg~~--~~~al~~a~~la~~~~~~ltv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (784)
+++|++|+||++. ++.|+++|.++|+..+++++++|++++.... ........ ...+ .++.++..++.++++.
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~l~~~~ 76 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSA----ELPA-MDDLKAEAKSQLEEII 76 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccc----cchH-HHHHHHHHHHHHHHHH
Confidence 4689999999998 5799999999999999999999999642210 00000000 0000 0222333445566666
Q ss_pred hhccCCCceEEEEEecCChHHHHHHHHh-ccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccE
Q 043446 702 MKIANDESVVYTEKLANNGEETLAAIRS-MDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSV 780 (784)
Q Consensus 702 ~~~~~~~~v~~~e~~v~~g~~~~~~i~~-~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~sv 780 (784)
++.... .+.+. ..+..|.+....++. .+.++||||||+| + .|+.+| -+|+..+.+..+ ++++|
T Consensus 77 ~~~~~~-~~~~~-~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~-~------~~~~~~----llGS~a~~vl~~---a~cpV 140 (144)
T PRK15005 77 KKFKLP-TDRVH-VHVEEGSPKDRILELAKKIPADMIIIASH-R------PDITTY----LLGSNAAAVVRH---AECSV 140 (144)
T ss_pred HHhCCC-CCceE-EEEeCCCHHHHHHHHHHHcCCCEEEEeCC-C------CCchhe----eecchHHHHHHh---CCCCE
Confidence 554322 22222 233345444444443 3557999999988 4 355554 289999999998 89999
Q ss_pred EEEC
Q 043446 781 LVVQ 784 (784)
Q Consensus 781 Lvvq 784 (784)
|||.
T Consensus 141 lvVr 144 (144)
T PRK15005 141 LVVR 144 (144)
T ss_pred EEeC
Confidence 9984
No 36
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.02 E-value=8.6e-08 Score=102.50 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA 171 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ 171 (784)
..+.+.+.-..++.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+.. +.+. ..--+|+-
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~-----~~~~----~~~GWaIP 129 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY-----ADPV----TREGWAIP 129 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec-----CCCc----ccCccccc
Confidence 4455666667789999999999887753 33333 44567788888644332221 1000 00111111
Q ss_pred HhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 172 LSVTAFPVLARILAEL-KLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPA 250 (784)
Q Consensus 172 ls~Ts~~vv~~il~el-~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 250 (784)
+ .||.+-..-++.=+ +..+..+...+++-+++||+.++++.+++. ++. ....+......++. +.
T Consensus 130 ~-ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~--i~~~~L~~a~~~~~--~l------ 194 (388)
T PRK09561 130 A-ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY----TSD--LSMVSLGVAAVAIA--VL------ 194 (388)
T ss_pred c-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec----CCC--ccHHHHHHHHHHHH--HH------
Confidence 1 25555444444333 236788889999999999999988877654 222 12222222222111 11
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Cc----chhHHHHHHHHHHHhhhhHH
Q 043446 251 ICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GP----LGLTLIEKLEDFVSGLLLPL 325 (784)
Q Consensus 251 ~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~----~~~~l~~~l~~~~~~~~~pl 325 (784)
++.+|.. .+....+..+.+++.. .....|+|+.++..+.|+.+|. .+ ..+++++++++.++.+.+|+
T Consensus 195 --~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPl 266 (388)
T PRK09561 195 --AVLNLCG----VRRTSVYILVGVVLWV--AVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPL 266 (388)
T ss_pred --HHHHHcC----CccchHHHHHHHHHHH--HHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHH
Confidence 2223321 2223344444444333 3447899999999999999997 22 13568888999998889999
Q ss_pred H-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHHHHHH
Q 043446 326 F-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLVEMIV 394 (784)
Q Consensus 326 f-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l~~ 394 (784)
| |...|..++-..+.. ..-+....+++..+++|.+|.+..++.. +.+|++-..+|++-+.-=++++.+
T Consensus 267 FAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFI 345 (388)
T PRK09561 267 FAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFI 345 (388)
T ss_pred HHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 788888883222221 1123455667777889999988887753 468899888888433333778888
Q ss_pred HHhhcc
Q 043446 395 LNVGKD 400 (784)
Q Consensus 395 ~~~~~~ 400 (784)
++.+++
T Consensus 346 a~LAF~ 351 (388)
T PRK09561 346 ASLAFG 351 (388)
T ss_pred HHHhcC
Confidence 888885
No 37
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.01 E-value=8.6e-08 Score=103.81 Aligned_cols=284 Identities=18% Similarity=0.225 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA 171 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ 171 (784)
..+.+.+.-..++.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+. .+.+ ..--+|+-
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n-----~~~~-----~~~GWgIP 132 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALN-----AGGP-----GASGWGVP 132 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheee-----cCCC-----ccCccccc
Confidence 4455666667789999999999887753 33333 4456677787764332221 1110 01112222
Q ss_pred HhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 172 LSVTAFPVLARILAELK-LINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPA 250 (784)
Q Consensus 172 ls~Ts~~vv~~il~el~-~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 250 (784)
+ .||.+...-++.=+| ..+..+...+++-|++||+.++++.+++.+ +. ....+......++. +
T Consensus 133 m-ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~--i~~~~L~~a~~~~~-~-------- 196 (423)
T PRK14855 133 M-ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SG--LNLLALLLAALTWA-L-------- 196 (423)
T ss_pred c-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CC--CCHHHHHHHHHHHH-H--------
Confidence 2 256555555554443 367778889999999999999887776542 21 12233222222111 1
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-c-c----------------------
Q 043446 251 ICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-P-L---------------------- 306 (784)
Q Consensus 251 ~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~-~-~---------------------- 306 (784)
-++.+|.. .+....++.+.+++.. .....|+|+.++..+.|+.+|.. + .
T Consensus 197 -l~~ln~~~----v~~~~~Y~~~G~~lW~--~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
T PRK14855 197 -ALLAGRLG----VTSLKIYAVLGALLWF--FVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGAR 269 (423)
T ss_pred -HHHHHHcC----CccccHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHH
Confidence 12233321 2223344444444333 33478999999999999999862 1 1
Q ss_pred --------------hhHHHHHHHHHHHhhhhHHH-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 043446 307 --------------GLTLIEKLEDFVSGLLLPLF-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY- 370 (784)
Q Consensus 307 --------------~~~l~~~l~~~~~~~~~plf-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~- 370 (784)
.+++++.+++.+..+.+|+| |...|..++-.. .. ...+.+++..++||.+|.++.++..
T Consensus 270 ~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lav 344 (423)
T PRK14855 270 LRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAV 344 (423)
T ss_pred HHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 13466778888888899999 788898885333 22 2455666777889999988887763
Q ss_pred ---------CCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHH
Q 043446 371 ---------QMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVM 419 (784)
Q Consensus 371 ---------~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~ 419 (784)
+++|++-..+|++-+.-=++++.+++.+++.....++.-..+.+.+++.
T Consensus 345 kl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~a 402 (423)
T PRK14855 345 RLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLA 402 (423)
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHH
Confidence 4688998888884443337888888888854323333444444444443
No 38
>PRK11175 universal stress protein UspE; Provisional
Probab=99.01 E-value=1.2e-09 Score=117.90 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=92.7
Q ss_pred CceEEEEeeCCCCh-------hHHHHHHHhhCCCCCC-CcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhH
Q 043446 453 EFRVLVCVHTPRNV-------PTIINLLEASHPTKRS-PICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDH 524 (784)
Q Consensus 453 e~riLv~v~~~~~~-------~~li~l~~~l~~~~~~-~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (784)
..+|++|++.++.. ..+++.+..++.. . +.+++++|+.+..........+.. ....+. +...++
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~--~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~---~~~~~~ 223 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ--LNHAEVHLVNAYPVTPINIAIELPEF---DPSVYN---DAIRGQ 223 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh--CcCCceEEEEEecCcchhcccccccc---chhhHH---HHHHHH
Confidence 35899999987643 4688888887743 3 578999999865432110000000 000000 111223
Q ss_pred HHHHHHHhhHccCceEE-EEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCC
Q 043446 525 IINAFENYEQHTGCVTV-QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPC 603 (784)
Q Consensus 525 i~~a~~~~~~~~~~v~v-~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc 603 (784)
..+.++.+.+. .++.. +..+.. .++.+.|++.|+++++||||||+|++++..+.+ +||++++|++++||
T Consensus 224 ~~~~l~~~~~~-~~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~~ 293 (305)
T PRK11175 224 HLLAMKALRQK-FGIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLNC 293 (305)
T ss_pred HHHHHHHHHHH-hCCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCCC
Confidence 33344455444 34433 233333 378999999999999999999999887665554 99999999999999
Q ss_pred ceEEEecCCC
Q 043446 604 SVGILVDRGL 613 (784)
Q Consensus 604 ~V~ilv~rg~ 613 (784)
||+++.++|+
T Consensus 294 pVLvv~~~~~ 303 (305)
T PRK11175 294 DLLAIKPDGY 303 (305)
T ss_pred CEEEEcCCCC
Confidence 9999866665
No 39
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.01 E-value=1.5e-07 Score=100.32 Aligned_cols=271 Identities=18% Similarity=0.207 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA 171 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ 171 (784)
..+...+.-..++.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+..- .....+| |+-
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~~-~~~~~GW---------~IP 125 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINHD-IKVINGW---------AIP 125 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhccC-CcccCcc---------ccc
Confidence 4555666667789999999998877642 33333 455677888886544333221 1100122 111
Q ss_pred HhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 172 LSVTAFPVLARILAEL-KLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPA 250 (784)
Q Consensus 172 ls~Ts~~vv~~il~el-~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 250 (784)
+ .||.+-..-++.=+ +..+..+.-.+++-+++||+.++++.+++. ++.- ...+.......+. ..
T Consensus 126 ~-ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY----t~~i--~~~~L~~A~~~~~--~l------ 190 (383)
T PRK14854 126 S-ATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY----TKSL--SLLSLSLGTLFIL--AM------ 190 (383)
T ss_pred c-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCCc--cHHHHHHHHHHHH--HH------
Confidence 1 24544444444333 237788888899999999999988777654 2221 2222222211111 11
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC--Cc---chhHHHHHHHHHHHhhhhHH
Q 043446 251 ICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN--GP---LGLTLIEKLEDFVSGLLLPL 325 (784)
Q Consensus 251 ~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~--~~---~~~~l~~~l~~~~~~~~~pl 325 (784)
++.+|..+ .+....++.+.+++.. .....|+|+.++..+.|+.+|. .+ ..+++++++++.++.+.+|+
T Consensus 191 --~~~nr~~~---v~~~~~Y~~~G~~lW~--~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPl 263 (383)
T PRK14854 191 --IICNRIFK---INRSSVYVVLGFFAWF--CTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPV 263 (383)
T ss_pred --HHHHHhcC---CceehHHHHHHHHHHH--HHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHH
Confidence 11222101 1223334444443332 3447899999999999999997 11 13567888899999999999
Q ss_pred H-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHHHHHH
Q 043446 326 F-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLVEMIV 394 (784)
Q Consensus 326 f-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l~~ 394 (784)
| |...|..++-..+.. ..-+....+++..+++|.+|.+..++.. +.+|++-..+|++-+.-=++++.+
T Consensus 264 FA~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFI 342 (383)
T PRK14854 264 FAFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFI 342 (383)
T ss_pred HHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 788888884222221 1123455677778889999988887753 368899888888444334788888
Q ss_pred HHhhccC
Q 043446 395 LNVGKDQ 401 (784)
Q Consensus 395 ~~~~~~~ 401 (784)
++.+.+.
T Consensus 343 a~LAF~~ 349 (383)
T PRK14854 343 GVLAFND 349 (383)
T ss_pred HHhhCCC
Confidence 8888853
No 40
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.97 E-value=6.9e-09 Score=96.75 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=84.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccC
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIAN 706 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (784)
||+||++|+++++.++++|.++|++.+++++++|+.+....... ... +..++..++.++++.+....
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~ 67 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP---SQL----------EVNVQRARKLLRQAERIAAS 67 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc---chh----------HHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999874321000 000 12233344555555544322
Q ss_pred C-CceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEEC
Q 043446 707 D-ESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 707 ~-~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvvq 784 (784)
. ..+.+....-.+..+.+... ..+.++||++||++++ +++.+ .-+|...+.+... ++++||||+
T Consensus 68 ~g~~~~~~~~~~~~~~~~I~~~-a~~~~~dlIV~G~~~~------~~~~~----~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 68 LGVPVHTIIRIDHDIASGILRT-AKERQADLIIMGWHGS------TSLRD----RLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred cCCceEEEEEecCCHHHHHHHH-HHhcCCCEEEEecCCC------CCccc----eecCchHHHHHhc---CCCCEEEeC
Confidence 1 22332222222332222211 2245689999999987 33322 3489999999987 889999986
No 41
>PRK15456 universal stress protein UspG; Provisional
Probab=98.97 E-value=7.9e-09 Score=98.12 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=86.5
Q ss_pred ceeEEEeccCCc--chHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHh
Q 043446 625 THNIAVLFFGGP--DDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRM 702 (784)
Q Consensus 625 ~~~I~v~~~gg~--~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (784)
++||++|+||++ .++.|+++|.++|+.. .+++++|++++........... ...+..+..++..++.++++.+
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~ 75 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAA-----DVRRFEEHLQHEAEERLQTMVS 75 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCccccccccccc-----chhhHHHHHHHHHHHHHHHHHH
Confidence 468999999994 8999999999999874 6999999986432100000000 0001102233445566777766
Q ss_pred hccCCCceEEEEEecCChHHHHHHHH-hccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEE
Q 043446 703 KIANDESVVYTEKLANNGEETLAAIR-SMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVL 781 (784)
Q Consensus 703 ~~~~~~~v~~~e~~v~~g~~~~~~i~-~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svL 781 (784)
+.... ...+ +..+..|.+....++ ..+.++||||||+|++ + +.+| -+|+..+.+... ++++||
T Consensus 76 ~~~~~-~~~v-~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~------~-~~~~----llGS~a~~v~~~---a~~pVL 139 (142)
T PRK15456 76 HFTID-PSRI-KQHVRFGSVRDEVNELAEELGADVVVIGSRNP------S-ISTH----LLGSNASSVIRH---ANLPVL 139 (142)
T ss_pred HhCCC-Ccce-EEEEcCCChHHHHHHHHhhcCCCEEEEcCCCC------C-ccce----ecCccHHHHHHc---CCCCEE
Confidence 54322 2222 233344433333333 2345689999999985 2 3332 289999999998 899999
Q ss_pred EEC
Q 043446 782 VVQ 784 (784)
Q Consensus 782 vvq 784 (784)
||.
T Consensus 140 vV~ 142 (142)
T PRK15456 140 VVR 142 (142)
T ss_pred EeC
Confidence 984
No 42
>PRK10116 universal stress protein UspC; Provisional
Probab=98.95 E-value=2.2e-09 Score=101.78 Aligned_cols=134 Identities=17% Similarity=0.223 Sum_probs=85.4
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcC-cccCCCCCCCCCcccccchhhhhhHHHHHHHHHh
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVE-PAERQSPDQNGLTVETENDNQRQLDEEYINEFRM 702 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (784)
.+++|++++|++++++.|+++|.++|++.++++|++|++++.... ... .+. ..+..+..++..++++++...
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~l~~~~~ 74 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFA--APM-----LEDLRSVMQEETQSFLDKLIQ 74 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhh--HHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999998532110 000 000 000001222223344555443
Q ss_pred hccCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEE
Q 043446 703 KIANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVL 781 (784)
Q Consensus 703 ~~~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svL 781 (784)
+. .+......+..|......++.. +.++||+|||+|++ +++++| +.+++.++.. ++++||
T Consensus 75 ~~----~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~------~~~~~~------~s~a~~v~~~---~~~pVL 135 (142)
T PRK10116 75 DA----DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNH------SFFSRA------SCSAKRVIAS---SEVDVL 135 (142)
T ss_pred hc----CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcc------hHHHHH------HHHHHHHHhc---CCCCEE
Confidence 32 2222333445555444555543 56799999999987 555554 3568888876 899999
Q ss_pred EE
Q 043446 782 VV 783 (784)
Q Consensus 782 vv 783 (784)
||
T Consensus 136 vv 137 (142)
T PRK10116 136 LV 137 (142)
T ss_pred EE
Confidence 98
No 43
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.89 E-value=4.5e-09 Score=99.98 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=82.0
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhc
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKI 704 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (784)
++||++|+||++.++.|+++|..+|+..+++++++|+..+....... ... ....+..++.++...+.++++..+.
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTG--LID---VNLGDMQKRISEETHHALTELSTNA 77 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhh--hhh---cchHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999995321110000 000 0000000111222223344443321
Q ss_pred cCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEE
Q 043446 705 ANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVV 783 (784)
Q Consensus 705 ~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvv 783 (784)
.+...+..+..|.+....++.. +.++||||||+|++ ++. .+|++.+.+... ++++||||
T Consensus 78 ----~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~------~lgSva~~v~~~---a~~pVLvv 137 (144)
T PRK15118 78 ----GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------FWS------KLMSSARQLINT---VHVDMLIV 137 (144)
T ss_pred ----CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------HHH------HHHHHHHHHHhh---CCCCEEEe
Confidence 2222333444444444444433 45699999999953 221 178999999987 89999998
Q ss_pred C
Q 043446 784 Q 784 (784)
Q Consensus 784 q 784 (784)
.
T Consensus 138 ~ 138 (144)
T PRK15118 138 P 138 (144)
T ss_pred c
Confidence 4
No 44
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.88 E-value=1.1e-08 Score=94.48 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=92.0
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhH
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ 534 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~ 534 (784)
|+++|+++++....+++.+..++.. .+.+++++|+.+....... + .... ...+.++.++.+.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~----~-----~~~~---~~~~~~~~l~~~~~~~~ 66 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAA----E-----LAEL---LEEEARALLEALREALA 66 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch----h-----HHHH---HHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999844 5788999999865433221 0 0000 01223334443333322
Q ss_pred ccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 535 HTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 535 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
. .+++++.....+ +..++|.+.+++.++|++|||++++....+. .+|+..++++++++|||.++
T Consensus 67 ~-~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 67 E-AGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred c-CCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEeC
Confidence 3 567777776655 4489999999999999999999987543332 38899999999999999873
No 45
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.86 E-value=1.1e-08 Score=94.59 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=81.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccC
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIAN 706 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (784)
||++|++|++.+++++++|.++|++.+++++++|+.+++... .. ++ .++.++++++...+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~------~~----------~~----~~~~l~~~~~~~~~ 60 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR------LS----------EA----ERRRLAEALRLAEE 60 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc------CC----------HH----HHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999998654310 00 11 22334444433222
Q ss_pred CCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEE
Q 043446 707 DESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVV 783 (784)
Q Consensus 707 ~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvv 783 (784)
..+.+......+..+ ...+.. +.++|++++|+|++ ++++++ -+|...+.++.+- .+++|||+
T Consensus 61 -~~~~~~~~~~~~~~~--~I~~~~~~~~~dllviG~~~~------~~~~~~----~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 61 -LGAEVVTLPGDDVAE--AIVEFAREHNVTQIVVGKSRR------SRWREL----FRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred -cCCEEEEEeCCcHHH--HHHHHHHHcCCCEEEeCCCCC------chHHHH----hcccHHHHHHHhC--CCCeEEEe
Confidence 123333222223333 222322 45689999999987 555544 4899999999872 38899997
No 46
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.86 E-value=1.9e-08 Score=93.90 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=84.7
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHH---
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFR--- 701 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 701 (784)
++||++|++|+++++.|+++|.++|++.+++++++|+.+....... .. ............+..
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~ 67 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF----SA----------AEDEESEEEAEEEEQARQ 67 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH----HH----------HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc----cc----------ccccccccccchhhhhhh
Confidence 4799999999999999999999999999999999999975432000 00 000000000000000
Q ss_pred ----hhccCCCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCc
Q 043446 702 ----MKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFAST 777 (784)
Q Consensus 702 ----~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~ 777 (784)
.....+....+......+..+.+.... .+.++||+|||++++ +++.+|- +|.+.+.++.. +.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~dliv~G~~~~------~~~~~~~----~gs~~~~l~~~---~~ 133 (140)
T PF00582_consen 68 AEAEEAEAEGGIVIEVVIESGDVADAIIEFA-EEHNADLIVMGSRGR------SGLERLL----FGSVAEKLLRH---AP 133 (140)
T ss_dssp HHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHTTCSEEEEESSST------TSTTTSS----SHHHHHHHHHH---TS
T ss_pred HHHHHHhhhccceeEEEEEeeccchhhhhcc-ccccceeEEEeccCC------CCccCCC----cCCHHHHHHHc---CC
Confidence 001112334455555555555443332 255699999999996 4555543 89999999987 88
Q ss_pred ccEEEE
Q 043446 778 VSVLVV 783 (784)
Q Consensus 778 ~svLvv 783 (784)
++||||
T Consensus 134 ~pVlvv 139 (140)
T PF00582_consen 134 CPVLVV 139 (140)
T ss_dssp SEEEEE
T ss_pred CCEEEe
Confidence 899998
No 47
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.83 E-value=2.9e-08 Score=106.13 Aligned_cols=286 Identities=22% Similarity=0.332 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA 171 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ 171 (784)
..+.+.+.-..++.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+ +.+.+ ...--+|+-
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~~-----n~~~~----~~~~GW~IP 125 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLAF-----NAGGP----EAAHGWAIP 125 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGG-------SST----THHHHTSSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhee-----ecCCC----CcCceEEec
Confidence 5566667777789999999998887742 33332 445667777775332221 11111 011222222
Q ss_pred HhhccHHHHHHHHHhcC-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 172 LSVTAFPVLARILAELK-LINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPA 250 (784)
Q Consensus 172 ls~Ts~~vv~~il~el~-~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 250 (784)
+ .||.+....++.=+| ..+..+...+++-+++||+.++++.+++.+ ++ ....+....... ..+.
T Consensus 126 ~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~---i~~~~L~~a~~~-~~~l------- 190 (378)
T PF06965_consen 126 M-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG---ISLLWLLLAAAA-LLLL------- 190 (378)
T ss_dssp S----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHH-HHHH-------
T ss_pred c-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC---CCHHHHHHHHHH-HHHH-------
Confidence 2 266666666655443 367788899999999999999888876542 11 122222222111 1111
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-Ccc--------hhHHHHHHHHHHHhh
Q 043446 251 ICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPL--------GLTLIEKLEDFVSGL 321 (784)
Q Consensus 251 ~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~~--------~~~l~~~l~~~~~~~ 321 (784)
+..+|.. .+....+..+.+++. +.....|+|+.++..+.|+.+|. ++. -+++++.+++.++.+
T Consensus 191 --~~l~r~~----v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~ 262 (378)
T PF06965_consen 191 --FVLNRLG----VRSLWPYLLLGILLW--YAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFV 262 (378)
T ss_dssp --HHHHHTT-------THHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHT
T ss_pred --HHHHHCC----CceehHHHHHHHHHH--HHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhh
Confidence 2233321 122333333333222 23447899999999999999998 333 246778889999888
Q ss_pred hhHHH-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHH
Q 043446 322 LLPLF-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLV 390 (784)
Q Consensus 322 ~~plf-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~ 390 (784)
.+|+| |...|..++-..+... .-+....+++..+++|.+|.+..++.. +++|++-..+|++-+.-=++
T Consensus 263 IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTm 341 (378)
T PF06965_consen 263 ILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTM 341 (378)
T ss_dssp HHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHH
T ss_pred hHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999 8899998886655431 233445666777889999988776653 45788888888844444488
Q ss_pred HHHHHHhhccCCcCChhhHHHHHHHH
Q 043446 391 EMIVLNVGKDQKVLDDESFAIMVIVA 416 (784)
Q Consensus 391 ~l~~~~~~~~~~~i~~~~~~~lv~~~ 416 (784)
++.++..+.+.....++.-..+.+.+
T Consensus 342 SLFIa~LAF~~~~~~~~aK~gIL~~S 367 (378)
T PF06965_consen 342 SLFIAGLAFDDPALQNAAKLGILIGS 367 (378)
T ss_dssp HHHHHHHHSTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhhhhHHHHHHHHHH
Confidence 88999998887444444444443333
No 48
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.75 E-value=7.2e-08 Score=92.12 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=95.3
Q ss_pred CceEEEEee-CCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHH
Q 043446 453 EFRVLVCVH-TPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 531 (784)
Q Consensus 453 e~riLv~v~-~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 531 (784)
..+++++++ +++......+.+..++.. ....++++++++................. ...........++..+.++.
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKR--LGAPLILLVVIDPLEPTALVSVALADAPI-PLSEEELEEEAEELLAEAKA 81 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHh--cCCeEEEEEEecccccccccccccccchh-hhhHHHHHHHHHHHHHHHHH
Confidence 458999999 888888888888887743 45667788888655433221100000000 00000002233555555555
Q ss_pred hhHccCceE-EEEEEEecCCCCh-HHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 532 YEQHTGCVT-VQPLTAISPYSSM-HEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 532 ~~~~~~~v~-v~~~~~vs~~~~~-~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
..+. .++. ++.....+ +. .+.|++.|++.++|+||||.+++++.++. .+||+.++|++++||||.++
T Consensus 82 ~~~~-~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 82 LAEA-AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHH-cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEE
Confidence 5544 4555 46666655 55 69999999999999999999988766553 39999999999999999997
No 49
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.69 E-value=6.9e-06 Score=84.45 Aligned_cols=265 Identities=19% Similarity=0.261 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHh---chhhH---HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhh
Q 043446 101 TMANVGLLYFLFLVGVEMDISAIRR---TGKKA---LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSV 174 (784)
Q Consensus 101 ~l~~igl~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~ 174 (784)
.+-+--..++.+.+|+|+..+.+.. +++++ ..-++.|++.|.++- .++ ..+.+. ..--+ ++-+.
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy----~~~-n~~~p~----~~~GW-aIP~A 134 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIY----LAL-NAGDPA----TLEGW-AIPMA 134 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHh----hee-ecCChh----hhcCc-CcccH
Confidence 3333334567788999999988863 34443 334555666664322 111 111110 00001 11123
Q ss_pred ccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 175 TAFPVLARILAEL-KLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICW 253 (784)
Q Consensus 175 Ts~~vv~~il~el-~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 253 (784)
||.+...-++.=+ +..++.+.-.+++-+++||+-++++.+++.. .+- + ..+.....+... +. .
T Consensus 135 TDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~L-s--~~al~~a~~~i~-vL-~-------- 198 (390)
T COG3004 135 TDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDL-S--MAALGIAALAIA-VL-A-------- 198 (390)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCc-c--HHHHHHHHHHHH-HH-H--------
Confidence 5555555555544 3478899999999999999999888876542 221 1 222222111111 11 1
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C----cchhHHHHHHHHHHHhhhhHHH-H
Q 043446 254 MIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-G----PLGLTLIEKLEDFVSGLLLPLF-F 327 (784)
Q Consensus 254 l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~----~~~~~l~~~l~~~~~~~~~plf-F 327 (784)
..+|.. .+....+++...++..+. ..-|+|..++..+.|+.+|- . +.-+++++.+.+.+..+.+|+| |
T Consensus 199 ~lN~~~----v~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaF 272 (390)
T COG3004 199 VLNRLG----VRRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAF 272 (390)
T ss_pred HHHHhC----chhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHH
Confidence 122221 222334555555555443 36799999999999999995 2 3346677788888888889999 8
Q ss_pred HHhhcccc---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHHHHHH
Q 043446 328 AISGLKTD---ISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLVEMIV 394 (784)
Q Consensus 328 ~~~G~~~d---~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l~~ 394 (784)
...|.+++ .+.+.+ +....+++..+++|.+|.+..++.. +.+|++-..++.+-+.-=++++.+
T Consensus 273 aNAGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI 348 (390)
T COG3004 273 ANAGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFI 348 (390)
T ss_pred ccCCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 88898877 444443 3455667778899999998888763 458888888888444344778888
Q ss_pred HHhhccC
Q 043446 395 LNVGKDQ 401 (784)
Q Consensus 395 ~~~~~~~ 401 (784)
...+++.
T Consensus 349 ~~LAf~~ 355 (390)
T COG3004 349 ASLAFGS 355 (390)
T ss_pred HHHhcCC
Confidence 8887765
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.43 E-value=3.1e-06 Score=77.79 Aligned_cols=129 Identities=20% Similarity=0.329 Sum_probs=84.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccC
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIAN 706 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (784)
+|++|+++++.++.++++|.++|+..++++|++|+.++...... ... +..++..++.++++......
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---~~~----------~~~~~~~~~~l~~~~~~~~~ 67 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---ELA----------ELLEEEARALLEALREALAE 67 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---hHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999864332000 000 22334455677777765421
Q ss_pred CCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEE
Q 043446 707 DESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVV 783 (784)
Q Consensus 707 ~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvv 783 (784)
..+........ |...-...+.. +.++|++++|++++ .++.+| -.|...+.+... ++++||+|
T Consensus 68 -~~~~~~~~~~~-~~~~~~i~~~~~~~~~dlvvig~~~~------~~~~~~----~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 68 -AGVKVETVVLE-GDPAEAILEAAEELGADLIVMGSRGR------SGLRRL----LLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred -CCCceEEEEec-CCCHHHHHHHHHHcCCCEEEEcCCCC------Ccccee----eeccHHHHHHhC---CCCCEEeC
Confidence 22333322222 32222333322 55689999999876 233222 379999999976 77899875
No 51
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.24 E-value=7e-06 Score=89.06 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=76.4
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHH
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHP--GNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFR 701 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~--~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (784)
.++||+||+|||+.++.|+++|..+|+.. +++++++||++...... .. +...+..++.+++.+
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~-----~~----------~~~~~~~eelle~~~ 68 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP-----EG----------QDELAAAEELLERVE 68 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc-----ch----------hHHHHHHHHHHHHHH
Confidence 46899999999999999999999999984 69999999987432100 00 111122334444444
Q ss_pred hhccC-----CCceEEEEEecC-------ChHHHHHHHHh-ccCCccEEEEcccCCCCCccccCcCccCCCCccccchhh
Q 043446 702 MKIAN-----DESVVYTEKLAN-------NGEETLAAIRS-MDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDL 768 (784)
Q Consensus 702 ~~~~~-----~~~v~~~e~~v~-------~g~~~~~~i~~-~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~ 768 (784)
+...+ ...+.+...++. .|....+.++. .+.++||||||..-+.. | .-|=|-++.--
T Consensus 69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~-----~-----~~~~~~~~~~~ 138 (357)
T PRK12652 69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPG-----G-----TAPMLQPLERE 138 (357)
T ss_pred HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCC-----C-----CCcccchHHHH
Confidence 43221 134555444432 13333344443 34569999999986532 1 12336666666
Q ss_pred hhcCCCC
Q 043446 769 LASSDFA 775 (784)
Q Consensus 769 las~d~~ 775 (784)
|+..+..
T Consensus 139 ~~~~~~~ 145 (357)
T PRK12652 139 LARAGIT 145 (357)
T ss_pred HHhcCCc
Confidence 6665543
No 52
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.08 E-value=0.00071 Score=70.97 Aligned_cols=253 Identities=18% Similarity=0.199 Sum_probs=144.1
Q ss_pred HHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHh
Q 043446 107 LLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAE 186 (784)
Q Consensus 107 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~e 186 (784)
+..++|-.|-++|++...+..||...+-+.-+++.++++..++.+++.-| -.....+.+-++++.|.-..=..+..|
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g---~~Gls~laiiaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG---IFGLSGLAIVAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc---ccchHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45688999999999999999888888888888888888888887776411 112456666677777777777788888
Q ss_pred cCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCch
Q 043446 187 LKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSE 266 (784)
Q Consensus 187 l~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e 266 (784)
.| -+++.|-..+ ..+||.=-+.++++... ++ .+.|
T Consensus 128 yG-~~~d~gA~~~--~sl~~GPf~tm~aLga~----------------------------------gL-A~ip------- 162 (312)
T PRK12460 128 FG-DERDVGAISI--LSLNDGPFFTMLALGAA----------------------------------GL-ANIP------- 162 (312)
T ss_pred cC-CHhhhhHHhh--hhhccCcHHHHHHHHHH----------------------------------HH-hcCC-------
Confidence 88 4555552221 11232222111111110 11 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHH
Q 043446 267 FYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWM 346 (784)
Q Consensus 267 ~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~ 346 (784)
.. .+ -+.+=+++.|+++.| ..+++.+.+++-. .+.+|+|-+..|+++|++++.+. .+.
T Consensus 163 ~~---~l---------------v~lilpILiGmilGN--ld~~~~~~l~~Gi-~f~I~f~~f~LG~~lnl~~I~~~-G~~ 220 (312)
T PRK12460 163 IM---AL---------------VAALLPLVLGMILGN--LDPDMRKFLTKGG-PLLIPFFAFALGAGINLSMLLQA-GLA 220 (312)
T ss_pred hH---HH---------------HHHHHHHHHHHHHhc--cchhhHHHHhccc-eEeHHHHHHHhcCCeeHHHHHHh-ChH
Confidence 00 00 012234566677776 1112334444433 55889999999999999988742 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH--HHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHH
Q 043446 347 ITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLG--LLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIIT 424 (784)
Q Consensus 347 ~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~ 424 (784)
.+++.+..++.-....+...+++|.+.+.+..+| ..-+.-|.. +++......+.. .+..+..+.++++.|.+..
T Consensus 221 -GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpA--AVaAadP~~~~~-~~~Ataqvaa~vivTail~ 296 (312)
T PRK12460 221 -GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPL--AIAAADPSLAPV-AAAATAQVAASVIVTAILT 296 (312)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHH--HHHHhchhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 2333333344455556666688888888777777 433222322 222222222222 2345555666666677777
Q ss_pred HHH-Hhhccc
Q 043446 425 PIV-TSIYKP 433 (784)
Q Consensus 425 pl~-~~l~~~ 433 (784)
|++ .|++|+
T Consensus 297 P~~t~~~~k~ 306 (312)
T PRK12460 297 PLLTSWVAKK 306 (312)
T ss_pred HHHHHHHHHH
Confidence 766 444443
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.07 E-value=2.6e-05 Score=84.73 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=76.1
Q ss_pred CceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHh
Q 043446 453 EFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY 532 (784)
Q Consensus 453 e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~ 532 (784)
-.|||+|+|++++...+++.+..+++....+.+++++||++...... .. ... .+..+++++..+..
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~------~~----~~~----~~~~eelle~~~~~ 70 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP------EG----QDE----LAAAEELLERVEVW 70 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc------ch----hHH----HHHHHHHHHHHHHH
Confidence 45899999999999999999999984311368999999997422110 00 000 12334444444443
Q ss_pred hHc-----cCceEEEEEEEec-----CCCChHHHHHHHHHhcCccEEEEcccccc
Q 043446 533 EQH-----TGCVTVQPLTAIS-----PYSSMHEDICNLAEDKRVALIIIPFHKHQ 577 (784)
Q Consensus 533 ~~~-----~~~v~v~~~~~vs-----~~~~~~~~I~~~A~~~~~dlIv~g~h~~~ 577 (784)
.++ ..++++++.+... ...++++.|+++|+++++|+||||-..+.
T Consensus 71 ~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~ 125 (357)
T PRK12652 71 ATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP 125 (357)
T ss_pred HHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 322 1478888877652 11489999999999999999999987653
No 54
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.05 E-value=6e-05 Score=71.71 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=88.4
Q ss_pred cceeEEEecc-CCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHh
Q 043446 624 VTHNIAVLFF-GGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRM 702 (784)
Q Consensus 624 ~~~~I~v~~~-gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (784)
..++|++++| |++..+.|++.|..+++..+.+++++++.+............. ........ ...++..++.+++.++
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALA-DAPIPLSE-EELEEEAEELLAEAKA 81 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccc-cchhhhhH-HHHHHHHHHHHHHHHH
Confidence 4578999999 9999999999999999999999998888764331000000000 00000000 1223444566666665
Q ss_pred hccCCCceE-EEEEecCCh-HHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccE
Q 043446 703 KIANDESVV-YTEKLANNG-EETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSV 780 (784)
Q Consensus 703 ~~~~~~~v~-~~e~~v~~g-~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~sv 780 (784)
.....+... -.+....++ .+.+....+ +.++||++||++++ +++++ --||.+.+.++.. ++++|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~i~~~a~-~~~adliV~G~~g~------~~l~~----~llGsvs~~v~~~---~~~pV 147 (154)
T COG0589 82 LAEAAGVPVVETEVVEGSPSAEEILELAE-EEDADLIVVGSRGR------SGLSR----LLLGSVAEKVLRH---APCPV 147 (154)
T ss_pred HHHHcCCCeeEEEEecCCCcHHHHHHHHH-HhCCCEEEECCCCC------ccccc----eeeehhHHHHHhc---CCCCE
Confidence 543332221 222223333 233333222 33699999999876 44433 3489999999998 89999
Q ss_pred EEEC
Q 043446 781 LVVQ 784 (784)
Q Consensus 781 Lvvq 784 (784)
|||.
T Consensus 148 lvv~ 151 (154)
T COG0589 148 LVVR 151 (154)
T ss_pred EEEc
Confidence 9984
No 55
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.02 E-value=0.011 Score=65.19 Aligned_cols=316 Identities=16% Similarity=0.141 Sum_probs=160.5
Q ss_pred CCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHH
Q 043446 61 RQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTL 140 (784)
Q Consensus 61 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~ 140 (784)
.+|+++--++.|+++.. +|.++ ++...+..+.+.+..+-+-+++.=++.|+++++|..+|.+..=..+ .+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HH
Confidence 47888888899999987 34441 1234456677777777777777778899999999988776443333 44
Q ss_pred HHHHHHHHHHHHhh-h-cCCCchhHHHHHHHHHHh-hccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 141 PFVIGGCFSFILHK-K-NQGMNQGTFVLFLGVALS-VTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAI 217 (784)
Q Consensus 141 ~~~~~~~~~~~l~~-~-~~~~~~~~~al~lg~~ls-~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~ 217 (784)
..++|+.+++++.. . +.+. ....+.+.|.-.. ...+..+... ++ .+ ..+.-+....|.++.-+.+.+..
T Consensus 94 g~viG~~va~~l~~~~l~~~~-wk~ag~l~gsyiGGs~N~~Av~~a---l~-~~---~~~~~a~~aaDnv~~~~~~~~l~ 165 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPEG-WKIAGMLAGSYIGGSVNFVAVAEA---LG-VS---DSLFAAALAADNVVMALWFAFLL 165 (378)
T ss_pred HHHHHHHHHHHHHhhcccchH-HHHHHHHHhcccCchhHHHHHHHH---HC-CC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666554 2 3211 0111222221111 1112222222 33 12 23333444455555545555444
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCchHHHHHHHHHHHHHHH----HHHHh-----
Q 043446 218 ALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRR--TPEGESFSEFYVCLILTGVMISGF----ITDAI----- 286 (784)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~--~~~~~~~~e~~~~~~l~~~l~~~~----~a~~~----- 286 (784)
.+.............--.. .........+. .++.++. .......+.+.+.... +++.+
T Consensus 166 ~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~l~~~la~a~~v~~~s~~la~~l~~~~~ 234 (378)
T PF05684_consen 166 ALPPFARKFDRWTKADTSS----------IEALEEEIEAEEAEWARKPI-SQDLAFLLAVAFAVVALSHALAAWLPPLFA 234 (378)
T ss_pred HHhhhhHHhhhccCCCccc----------cchhhhhhhhhhhccccCCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4332100000000000000 00000000000 0000111 1223333343333333 33333
Q ss_pred ch----hhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHH
Q 043446 287 GT----HSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAG 362 (784)
Q Consensus 287 G~----~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~ 362 (784)
+. -.++-....|++...+|..+.+ .--+.+. .+++-+||..+|++.|+..+.+ -+..+++.++.+..-.+.
T Consensus 235 ~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~i~l~iH~~l 309 (378)
T PF05684_consen 235 GISSSTWLILTVTTLGLATSFPPFRKLL-RGASELG-TFLLYLFFAVIGASADISELLD---APSLFLFGFIILAIHLLL 309 (378)
T ss_pred hccccHHHHHHHHHHHHHHhccchhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHH---hHHHHHHHHHHHHHHHHH
Confidence 11 1334445556665555555444 4445555 7777889999999999998875 223344455556677888
Q ss_pred HHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHH
Q 043446 363 TLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAI 411 (784)
Q Consensus 363 ~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~ 411 (784)
.+..++++|.|..+....+- -|.-|..+......+++..+..+-+...
T Consensus 310 ~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pgvL~g 357 (378)
T PF05684_consen 310 MLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPGVLMG 357 (378)
T ss_pred HHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHHHHHH
Confidence 88999999999877665555 6666766665555555555554433333
No 56
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.038 Score=58.41 Aligned_cols=272 Identities=12% Similarity=0.157 Sum_probs=135.4
Q ss_pred hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHH-
Q 043446 65 VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFV- 143 (784)
Q Consensus 65 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~- 143 (784)
+...+++|+.+|-..-+... .+ ..-+...++.--.+|+++.|+-.=.++|++++++..++.-.+ ..+..+.++
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~----~l-~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii 93 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQ----LL-GKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHhcccchhh----hc-ccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 55667788888854333110 00 000122344555688888888888999999998766542222 223333333
Q ss_pred ---HHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043446 144 ---IGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALG 220 (784)
Q Consensus 144 ---~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~ 220 (784)
+.+.+++++.+ .........+++|.+=| ||...+-.-|. +.+ -..++..-.+||++.+++++....+.
T Consensus 94 ~P~lm~~la~~fl~--~~pey~~GlILlglApC-~aMVivw~~La-----~Gd-~~~tlv~Va~n~l~qiv~y~~~~~~~ 164 (342)
T COG0798 94 GPLLMFALAWFFLP--DEPEYRAGLILLGLAPC-IAMVIVWSGLA-----KGD-RELTLVLVAFNSLLQIVLYAPLGKFF 164 (342)
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhhhh-HHHHHHHHhhc-----cCc-HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444432 21112222333333322 33333333222 222 33455556699999998887665543
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhh
Q 043446 221 ENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLV 300 (784)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~ 300 (784)
-+.......++.++..++..+.+-++.+.+.++...|.. ++...|..
T Consensus 165 l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~k-g~~~~~~~-------------------------------- 211 (342)
T COG0798 165 LGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKK-GREWYESR-------------------------------- 211 (342)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHH--------------------------------
Confidence 322222234566666666666666777777777666642 22111111
Q ss_pred cCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 043446 301 IPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTL 380 (784)
Q Consensus 301 l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~l 380 (784)
...+++++.---++-..++....+-|. -...+.+...+.+-.+.-+...+..+++.++..|+|.+++..+
T Consensus 212 ---------f~p~ispi~ligLl~TivliF~~qg~~-Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~ 281 (342)
T COG0798 212 ---------FLPKISPIALIGLLLTIVLIFAFQGEQ-IVEQPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAAL 281 (342)
T ss_pred ---------HHhhcChHHHHHHHHHHHHHHHHhHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhce
Confidence 111111111000000111222222221 0111223333444444555667778888899999999998888
Q ss_pred HHHhcchhHHHHHHH
Q 043446 381 GLLMNTKGLVEMIVL 395 (784)
Q Consensus 381 g~~m~~rG~~~l~~~ 395 (784)
++....+ -++++++
T Consensus 282 ~ft~aSN-nfeLAiA 295 (342)
T COG0798 282 VFTGASN-NFELAIA 295 (342)
T ss_pred eeeeccc-cHHHHHH
Confidence 8855554 2444444
No 57
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.57 E-value=0.045 Score=58.98 Aligned_cols=117 Identities=9% Similarity=0.123 Sum_probs=73.4
Q ss_pred HHHHHHhc-----hhhhHHHHHHHhhcCC-Cc--chhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHH
Q 043446 280 GFITDAIG-----THSVFGAFVFGLVIPN-GP--LGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLV 351 (784)
Q Consensus 280 ~~~a~~~G-----~~~~lgaf~aGl~l~~-~~--~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~ 351 (784)
.++.+.++ +....++++.|+++.+ .+ ...++.++..+...++-+-+|....=|++.+..+.+ -..++.+++
T Consensus 235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~viL 313 (404)
T COG0786 235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLLVIL 313 (404)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHHHHH
Confidence 34566555 5678999999999998 21 122233443333447788888888888888887775 233444444
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcc-hhHHHHHHHHh
Q 043446 352 IILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNT-KGLVEMIVLNV 397 (784)
Q Consensus 352 ~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~-rG~~~l~~~~~ 397 (784)
.+-..+.-+...+...+..|.++..+...+.-++. -|...-+++++
T Consensus 314 ~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 314 AVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 44455555666777788888887776664443332 44555556654
No 58
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.56 E-value=0.053 Score=59.73 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=55.0
Q ss_pred chhhhHHHHHHHhhcCC--Ccc-hhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 043446 287 GTHSVFGAFVFGLVIPN--GPL-GLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGT 363 (784)
Q Consensus 287 G~~~~lgaf~aGl~l~~--~~~-~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~ 363 (784)
.+....++++.|+++.+ ... ..++.++.-+...++.+-+|.+..=+++++..+.+ ...++.+++++-.++.=+...
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~~f~~ 324 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMVLFAY 324 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999997 211 11122222222335555556566667778877775 233333334444444445556
Q ss_pred HHHHHHhCCCchhHHHHHHHhc
Q 043446 364 LLVSLMYQMPIREGVTLGLLMN 385 (784)
Q Consensus 364 ~l~~~~~~~~~~~~~~lg~~m~ 385 (784)
++..+.++.++ |+..+++..+
T Consensus 325 fv~fr~~gkdy-daavm~~G~~ 345 (368)
T PF03616_consen 325 FVTFRVMGKDY-DAAVMSAGFC 345 (368)
T ss_pred HHhhhhhCCCh-hHHHHhhhhh
Confidence 66777888776 5555544333
No 59
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.52 E-value=0.077 Score=56.29 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchhHHHHHHHHHHhhcc
Q 043446 98 VLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHK-KNQGMNQGTFVLFLGVALSVTA 176 (784)
Q Consensus 98 ~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~al~lg~~ls~Ts 176 (784)
.++..-.+.+.++||..|+.+..+++++..++.... +.+...+|++.=++++.+.. +.. ..-+..|..+..+.
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~~l-----~~~l~~Gl~ll~~~ 108 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLFPL-----PPELAVGLLLLGCC 108 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHhHHheeeC
Confidence 344445788999999999999999998765443222 23333444444444444433 222 23455666554333
Q ss_pred HHHHHHH-HHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 177 FPVLARI-LAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTS---TLASLWVILSGAAFVIFCVFVVRPAIC 252 (784)
Q Consensus 177 ~~vv~~i-l~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~ 252 (784)
|.-+.+. +.-+ .+.+ --+.++.+.++.+++.++.-+...+..++.. .+..++.++..++.-++.+.++|+...
T Consensus 109 Pggv~S~~~t~l--AkGn-ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~ 185 (319)
T COG0385 109 PGGVASNAMTYL--AKGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLP 185 (319)
T ss_pred CCchhHHHHHHH--hcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322221 1211 1222 2345566777888887777666554333222 244566666666666777777777766
Q ss_pred HHHHHc
Q 043446 253 WMIRRT 258 (784)
Q Consensus 253 ~l~~~~ 258 (784)
...++.
T Consensus 186 ~~~~~~ 191 (319)
T COG0385 186 KWVERL 191 (319)
T ss_pred HHHHHH
Confidence 555553
No 60
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.48 E-value=0.16 Score=55.02 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=80.3
Q ss_pred HcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHH-HHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHH
Q 043446 57 LKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVM-VLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAV 135 (784)
Q Consensus 57 ~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~-~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~ 135 (784)
.++.+++.++--++.|+++|+......++ .. .++.+ .-+.+-++|++ +.|.+++++++.+.+.+.+.+..
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~--~~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EK--KRGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hc--cchHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHH
Confidence 45578999999999999999753211111 01 11211 23455666666 57999999999999998877766
Q ss_pred HHHHHHHHHHHHHH-HHHhhhcCCCchhHHHHHHHHHHhhcc---HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHH
Q 043446 136 GGMTLPFVIGGCFS-FILHKKNQGMNQGTFVLFLGVALSVTA---FPVLARILAELKLINTELGRIAMSSALINDMCAWV 211 (784)
Q Consensus 136 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~al~lg~~ls~Ts---~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ 211 (784)
..+..++.++..++ .. ++.+. ..++++++-.++.. ...+.+++ | .+.+-...+.+.-.+=+.++.+
T Consensus 97 ~~v~~~~~~~~~~g~k~---l~l~~---~~~~Lia~GtsICGaSAi~A~a~~i---~-A~~~~~a~ava~V~lfgt~am~ 166 (335)
T TIGR00698 97 LILTSTFFLTVFLGSSR---LKLDK---QMSILLGAGSSICGAAAVAAIEPVI---K-AEKEKVSVAIAIVVIFGTTGIF 166 (335)
T ss_pred HHHHHHHHHHHHHHHHH---hCCCh---hHHHHHHcchhHHHHHHHHHhcccc---C-CCccceeeeehHHHHHHHHHHH
Confidence 66666555554443 23 34333 33444444433322 22222332 2 2333344555555555666666
Q ss_pred HHHHHHHH
Q 043446 212 LLAFAIAL 219 (784)
Q Consensus 212 ll~~~~~~ 219 (784)
++-.+..+
T Consensus 167 l~P~l~~~ 174 (335)
T TIGR00698 167 LYPSIYHY 174 (335)
T ss_pred HHHHHHHH
Confidence 66544433
No 61
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.45 E-value=0.016 Score=60.64 Aligned_cols=258 Identities=17% Similarity=0.151 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--chhHHHHHHHHHHhhccHHHHHHH
Q 043446 106 GLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGM--NQGTFVLFLGVALSVTAFPVLARI 183 (784)
Q Consensus 106 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~al~lg~~ls~Ts~~vv~~i 183 (784)
-+.+++|-.|-++|++...+..||...+-+.-+++.++++.++..+++.-|... -.....+.+-++++.+....=..+
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL 129 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLAL 129 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHH
Confidence 345688999999999999999999999988888888888888887765422100 022456777777788888888888
Q ss_pred HHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 043446 184 LAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGES 263 (784)
Q Consensus 184 l~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 263 (784)
..|.| -+++.|-. +...++|.=.+.++++-. ......++ ..+
T Consensus 130 ~~~yG-d~~D~gA~--~i~sl~~GPf~tMl~LG~--sG~a~ip~---~~l------------------------------ 171 (314)
T PF03812_consen 130 MGQYG-DEEDVGAF--SILSLNDGPFFTMLALGA--SGLANIPW---MSL------------------------------ 171 (314)
T ss_pred HHHhC-CHHHhHHH--HHHHhhhhHHHHHHHHhh--ccccCCCH---HHH------------------------------
Confidence 88888 45555432 222244433322222111 00000000 000
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccch
Q 043446 264 FSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTS 343 (784)
Q Consensus 264 ~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~ 343 (784)
=+.+=+++.|+++.| ..+++.+.+.+-. ..++|+|-..+|..+|+..+....
T Consensus 172 -------------------------v~~llP~iiG~iLGN--LD~~~r~fl~~~~-~~lIPF~~f~lGa~inl~~i~~aG 223 (314)
T PF03812_consen 172 -------------------------VAALLPIIIGMILGN--LDPDFRKFLAPGV-PILIPFFGFALGAGINLSNIIKAG 223 (314)
T ss_pred -------------------------HHHHHHHHHHHHHhc--CCHHHHHHHhcCC-CeeeehhhhhhcCCCCHHHHHHhC
Confidence 012234667777776 2223444444443 888999999999999998876532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHh
Q 043446 344 TWMITLLVIILACAGKIAGTLLVSLMY-QMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGI 422 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~~~~l~~~~~-~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i 422 (784)
..+.++.+ ..++.--...++.-++. |-+-.-++..+-.-+.--....+++..-.+....- +..+..+.++++.|.+
T Consensus 224 l~GIlLgv--~~~~vtg~~~~~~dr~i~~~~g~aG~A~sstAGnavatPaaiA~~dP~~~~~~-~~ATaQvAaavIvTai 300 (314)
T PF03812_consen 224 LSGILLGV--IVVVVTGIPLYLADRLILKGNGVAGAAISSTAGNAVATPAAIAAADPSFAPYA-ASATAQVAAAVIVTAI 300 (314)
T ss_pred cchHHHHH--HHHHHHhHHHHHHHHHHcCCCCceeehHHhhhhhhhhhhHHHHHhChhhHhhH-HHHHHHHHHHHHHHHH
Confidence 22222222 22222233345555553 32222222222211111122233333333332222 3344445555566666
Q ss_pred HHHHH-Hhhcc
Q 043446 423 ITPIV-TSIYK 432 (784)
Q Consensus 423 ~~pl~-~~l~~ 432 (784)
.+|++ .|+.|
T Consensus 301 l~P~lt~~~~k 311 (314)
T PF03812_consen 301 LTPILTSWWAK 311 (314)
T ss_pred HHHHHHHHHHH
Confidence 66665 44443
No 62
>PRK10490 sensor protein KdpD; Provisional
Probab=97.16 E-value=0.002 Score=79.59 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=88.3
Q ss_pred CCCceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHH
Q 043446 451 DSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 530 (784)
Q Consensus 451 ~~e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 530 (784)
...-|||||++.+.+.+.+++-+..++. +.+++.+++||.....+.. . .+..+++.+.++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~--~~~a~~~~l~V~~~~~~~~-------------~-----~~~~~~l~~~~~ 307 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAA--RLGSVWHAVYVETPRLHRL-------------P-----EKKRRAILSALR 307 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHH--hcCCCEEEEEEecCCcCcC-------------C-----HHHHHHHHHHHH
Confidence 3556899999999999999999988884 3577899999874211110 0 223345555554
Q ss_pred HhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCC-CceEEEe
Q 043446 531 NYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP-CSVGILV 609 (784)
Q Consensus 531 ~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap-c~V~ilv 609 (784)
.+++ -|.++.+. .+ +++++.|.++|++++++.||||-+++.+. ..-||+.+++++.+| ..|.|+.
T Consensus 308 -lA~~-lGa~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~--------~~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 308 -LAQE-LGAETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRRW--------WRRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred -HHHH-cCCEEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC--------ccCCCHHHHHHHhCCCCCEEEEe
Confidence 4443 34443333 23 68999999999999999999998876421 114689999999998 6777763
No 63
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.10 E-value=0.33 Score=53.89 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=60.3
Q ss_pred chhhhHHHHHHHhhcCC-Cc-ch-hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHH-HHHH
Q 043446 287 GTHSVFGAFVFGLVIPN-GP-LG-LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAG-KIAG 362 (784)
Q Consensus 287 G~~~~lgaf~aGl~l~~-~~-~~-~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~-K~~~ 362 (784)
.+....++++.|+++.+ .+ .+ .++.++.-+...++.+-+|.+..=+++++..+.+ .+.-.+++.+..++. =+..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999998 21 11 1122223333346666677777778888888874 333333333333333 3344
Q ss_pred HHHHHHHhCCCchhHHHHHHHhcch--hHHHHHHHH
Q 043446 363 TLLVSLMYQMPIREGVTLGLLMNTK--GLVEMIVLN 396 (784)
Q Consensus 363 ~~l~~~~~~~~~~~~~~lg~~m~~r--G~~~l~~~~ 396 (784)
.++..+..+.+ .|+..++...+.. |...-++++
T Consensus 322 ~fv~fr~mg~~-ydaaV~~ag~~G~~lGatptaian 356 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIAN 356 (398)
T ss_pred HHHhHHhccch-HHHHHHhcccccccccchHHHHHH
Confidence 45666667766 7776644433332 333334443
No 64
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.93 E-value=0.24 Score=53.83 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHH----HHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHH-
Q 043446 105 VGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFV----IGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPV- 179 (784)
Q Consensus 105 igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~v- 179 (784)
+.++++||-.|++++++++++..|+...+ ..+.+..++ +++.+++.+. +.+ ..+.+|..+..+.|..
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~-~~~~~~qfvi~Plla~~l~~l~~--~~~-----p~l~~GliLv~~~Pgg~ 118 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGL-ILSLFINWIIGPFLMFLLAWLFL--RDL-----FEYIAGLILLGLARCIA 118 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHHc--CCC-----HHHHHHHHHHHhcchHH
Confidence 45668999999999999998866554332 223333333 3444444331 222 2355565554433333
Q ss_pred HHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 180 LARILAELKLINTELGRIAMSSALINDMCAWVLLAFAI 217 (784)
Q Consensus 180 v~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~ 217 (784)
.+.++..+. +.+.. +.++.+.++.+++.+++-...
T Consensus 119 ~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 119 MVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPLA 153 (328)
T ss_pred HHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333344333 33333 555556677777766664443
No 65
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.89 E-value=0.4 Score=51.34 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=82.3
Q ss_pred cccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHH-HHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHH
Q 043446 58 KPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMV-LETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVG 136 (784)
Q Consensus 58 ~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~-l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 136 (784)
....++.++--++.|+++|+..++.-+.+ . +..+. -+.+-++|++ +.|.++++.++.+.+.+...+...
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~-----~-~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARF-----K-PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHH-----H-hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence 34678889999999999997333332210 0 12222 2466667766 579999999999999988887777
Q ss_pred HHHHHHHHHHHHH-HHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHH
Q 043446 137 GMTLPFVIGGCFS-FILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAF 215 (784)
Q Consensus 137 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~ 215 (784)
.+.+++.+++.++ .. ++.+. ..+.++++-.++.....+..+-.-.| .+.+--..+++.-.+=..++.+++-.
T Consensus 92 ~v~~~~~~~~~lg~r~---~~l~~---~~~~Lia~GtsICG~SAi~A~a~~i~-a~~~~~a~ava~V~lfg~vam~~~P~ 164 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRL---FGLDR---KLAILIAAGTSICGASAIAATAPVIK-AKEEDVAYAVATVFLFGTVAMFLYPL 164 (305)
T ss_pred HHHHHHHHHHHHHHHH---hCCCH---HHHHHHHhhcccchHHHHHHHccccc-CCCCceeeeehHHHHHHHHHHHHHHH
Confidence 7777666655544 33 44443 34555555554433222222211122 22333334444545555555555554
Q ss_pred HHH
Q 043446 216 AIA 218 (784)
Q Consensus 216 ~~~ 218 (784)
+..
T Consensus 165 l~~ 167 (305)
T PF03601_consen 165 LGH 167 (305)
T ss_pred HHH
Confidence 443
No 66
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.83 E-value=0.29 Score=53.89 Aligned_cols=321 Identities=15% Similarity=0.234 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHH---hhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHH--
Q 043446 40 ILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGV---LLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLV-- 114 (784)
Q Consensus 40 l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGi---ilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~-- 114 (784)
+.-+.++.+++.+++++=+|+ |-+=-|+=.|. +++|+.+-... ++|++..+..+.+-+-.=.+.+|.+
T Consensus 31 ~g~~a~~~v~G~~l~~IG~ri--Pi~k~yiGGg~il~~f~ps~Lv~~~-----~ip~~~~~~v~~fm~~~~Fl~ffIa~L 103 (414)
T PF03390_consen 31 IGGFAVMMVLGFLLGEIGDRI--PILKDYIGGGAILCIFVPSALVYFG-----LIPESVVEAVTNFMKGSNFLYFFIAAL 103 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhC--hhhhccCChHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHhccCChHHHHHHHH
Confidence 444555566666666665553 22222222222 23444432221 3444433333333222111122222
Q ss_pred ----hhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH-----hhccHHHHHHHHH
Q 043446 115 ----GVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVAL-----SVTAFPVLARILA 185 (784)
Q Consensus 115 ----Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~l-----s~Ts~~vv~~il~ 185 (784)
=+.||.+.+.|...|-+-..+.+.+..++++.+++.+++. ++. ...+.+..-. ..-+.|..--.=+
T Consensus 104 I~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~---~~~--~~i~~i~lPIMgGG~GaGavPLS~~Ya~ 178 (414)
T PF03390_consen 104 IVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGY---SFK--DAIFYIVLPIMGGGMGAGAVPLSQIYAE 178 (414)
T ss_pred HHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHH--HHHHHHHhhhcCCCccccHhHHHHHHHH
Confidence 2489999999998888888888888888888877777654 221 1111111111 1111111111111
Q ss_pred hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----c------h------------hHHHHHHHHHHHHHHH
Q 043446 186 ELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTS----T------L------------ASLWVILSGAAFVIFC 243 (784)
Q Consensus 186 el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~----~------~------------~~~~~~~~~~~~~~~~ 243 (784)
-++.-.++.-..++.+.++..+++++.-+++--+...... + . ..+..+ ...++....
T Consensus 179 ~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~-g~Gllla~~ 257 (414)
T PF03390_consen 179 ALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDM-GAGLLLACS 257 (414)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHH-HHHHHHHHH
Confidence 1233334444455556666666666655554443221100 0 0 001111 111222233
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC----CcchhHHHHHHHHHHH
Q 043446 244 VFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN----GPLGLTLIEKLEDFVS 319 (784)
Q Consensus 244 ~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~----~~~~~~l~~~l~~~~~ 319 (784)
++.++.+...+ +++|+..-..+.=.++.- ++.-++-.++...+..
T Consensus 258 ~y~~G~ll~~~-------------------------------i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~ 306 (414)
T PF03390_consen 258 FYILGVLLSKL-------------------------------IGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFS 306 (414)
T ss_pred HHHHHHHHHHh-------------------------------cCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence 33333333333 333333222222222221 2223333344555555
Q ss_pred hhhhHHHHHHhhcc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchhHHHHHHHhcchh-HHHHHHHH
Q 043446 320 GLLLPLFFAISGLK-TDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQM-PIREGVTLGLLMNTKG-LVEMIVLN 396 (784)
Q Consensus 320 ~~~~plfF~~~G~~-~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~-~~~~~~~lg~~m~~rG-~~~l~~~~ 396 (784)
.-+.+...+-+|.. +|++++.+..++. .+++++..+++-.++.++.+++.|+ |...+...|+.|+.+| .-++++.+
T Consensus 307 ~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLs 385 (414)
T PF03390_consen 307 KNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLS 385 (414)
T ss_pred HHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchhee
Confidence 66667777888988 9998887644554 3455556667788889999999996 4455666776777665 55667776
Q ss_pred hhccCCcCC
Q 043446 397 VGKDQKVLD 405 (784)
Q Consensus 397 ~~~~~~~i~ 405 (784)
.+.+.+++.
T Consensus 386 Aa~RM~Lmp 394 (414)
T PF03390_consen 386 AANRMELMP 394 (414)
T ss_pred hhhhccccc
Confidence 666666665
No 67
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.83 E-value=0.094 Score=54.71 Aligned_cols=256 Identities=18% Similarity=0.195 Sum_probs=135.3
Q ss_pred HHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--chhHHHHHHHHHHhhccHHHHHHHH
Q 043446 107 LLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGM--NQGTFVLFLGVALSVTAFPVLARIL 184 (784)
Q Consensus 107 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~al~lg~~ls~Ts~~vv~~il 184 (784)
+..++|-.|-++|++...+..||...+.+.-+++.++++.+++.+++.-|... -.....+.+-++++.|.-..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45688999999999999888888888878888888888888887765411000 1124456666666767777777777
Q ss_pred HhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 043446 185 AELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESF 264 (784)
Q Consensus 185 ~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 264 (784)
.|.| -+++.|-..+ ..+||.=-+.++++-. ..-...+ ++.
T Consensus 131 ~qyG-d~~D~gA~~i--~sl~~GPf~TMi~LG~--sGlA~ip---~~~-------------------------------- 170 (314)
T TIGR00793 131 QQYG-TKEEAGAFVL--MSLESGPLMTMVILGT--AGIASFE---PHV-------------------------------- 170 (314)
T ss_pred HHcC-CHhhhhhhhh--hhhccCcHHHHHHHhh--ccCCCCC---HHH--------------------------------
Confidence 8877 4545553222 2233332221111100 0000000 000
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchh
Q 043446 265 SEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTST 344 (784)
Q Consensus 265 ~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~ 344 (784)
+=+.+=+++.|+++.| ..+++.+-+.+-. ..++|+|-..+|..+|++.+.+...
T Consensus 171 -----------------------lv~~ilPlliG~ilGN--LD~~~r~fl~~~~-~~lIpFf~FaLGaginl~~i~~aGl 224 (314)
T TIGR00793 171 -----------------------FVGAVLPFLVGFALGN--LDPELRDFFSKAV-QTLIPFFAFALGNTIDLGVIIQTGL 224 (314)
T ss_pred -----------------------HHHHHHHHHHHHHHhc--CCHHHHHHhccCC-CeeeehhhhhhcCCCCHHHHHHhCc
Confidence 0022335667777777 2223444444443 7889999999999999988754222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhH
Q 043446 345 WMITLLVIILACAGKIAGTLLVSLMYQ-MPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGII 423 (784)
Q Consensus 345 ~~~~~~~~~~~~~~K~~~~~l~~~~~~-~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~ 423 (784)
.+.++.+ ..++.--...++.-++.+ -+..-.+..+-.-+.--....+++..-.+.... .+..+..+.++++.|.+.
T Consensus 225 ~GIlLGl--~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~-a~~ATaqvAaavivTaiL 301 (314)
T TIGR00793 225 LGILLGV--SVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPV-APAATALVATSVIVTSLL 301 (314)
T ss_pred chHHHHH--HHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 2222211 122233444556666663 222223333221111112222333332222222 234555566677777777
Q ss_pred HHHHHhhc
Q 043446 424 TPIVTSIY 431 (784)
Q Consensus 424 ~pl~~~l~ 431 (784)
.|++..++
T Consensus 302 ~Pilta~~ 309 (314)
T TIGR00793 302 VPIATVWW 309 (314)
T ss_pred HHHHHHHH
Confidence 77765444
No 68
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.79 E-value=0.47 Score=51.15 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhchhhHHHH---HHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhcc
Q 043446 100 ETMANVGLLYFLFLVGVEMDISAIRRTGKKALAI---AVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTA 176 (784)
Q Consensus 100 ~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts 176 (784)
+....+++..++|..|+.++.+++++..++.-.. -...+++.=++++.+....... . ...+..|......-
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~--~----~~~l~~Gl~~~~~l 103 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAF--L----PPELALGLLILACL 103 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcc--C----CHHHHHHHHHHhhC
Confidence 4667788888999999999999998765543222 2222222222333333333211 1 12344444443333
Q ss_pred HHHHHH--HHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043446 177 FPVLAR--ILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGE 221 (784)
Q Consensus 177 ~~vv~~--il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~ 221 (784)
|..+.+ ++.+. .+.+ -..++..+.++.++++++.-+...+..
T Consensus 104 PtTv~S~v~~T~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 104 PTTVSSSVVLTRL--AGGN-VALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred CchhhHHHHHHHH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 322222 12222 2222 334556677788888777766665444
No 69
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.52 E-value=1.6 Score=47.09 Aligned_cols=300 Identities=14% Similarity=0.197 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHhHcccCCCh--hHH-HHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHh
Q 043446 39 FILQLTLVVVTTRLLVLVLKPFRQPR--VIS-EIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVG 115 (784)
Q Consensus 39 ~l~~l~lil~~~~l~~~l~~rl~~P~--iv~-~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~G 115 (784)
...+.++.++++...++++..+++|. ..| -+++|++.+-...- ++ .| ..+...|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~------~P-------~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LP------LP-------RGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-cc------CC-------hHHHHHHHHHHHHHHh
Confidence 46678888899999999999999875 555 66677776622111 00 12 3344555555666889
Q ss_pred hccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 043446 116 VEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKN-QGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTEL 194 (784)
Q Consensus 116 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~ 194 (784)
..+..+.+....+ -+.+.....+++...+.+.+|++.+++ .+. ..+++-.. +-.......+-+|.| .|.+.
T Consensus 73 ~~~t~s~l~~l~~-~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~---~Ta~~gs~---PGgas~m~~iA~d~g-Ad~~~ 144 (352)
T COG3180 73 ASLTPSVLDTLKS-NWPIVLVVLLLTLLSSILLGWLLKRFSILPG---NTAFLGSS---PGGASAMVSIAQDYG-ADLRL 144 (352)
T ss_pred hhcCHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHHhcCCCc---chhhHhcC---CchHHHHHHHHHHhC-CChhH
Confidence 9998887754332 233444455556666777777776644 222 22222211 111122222225555 44433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHH-HH
Q 043446 195 GRIAMSSALINDMCAWVLLAFAIALGE-NDTSTLA--SLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFY-VC 270 (784)
Q Consensus 195 g~l~l~~a~i~D~~~~~ll~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~-~~ 270 (784)
--+..+.=++-=...+++++ .... ++.+... .++ .+..+.. +.
T Consensus 145 VAl~Q~lRvl~Vvl~vplv~---~~~~~~~a~~~~~~~i~------------------------------~~~~~~~~~~ 191 (352)
T COG3180 145 VALMQYLRVLFVVLLAPLVS---RLFVGDGANGSGTPEIW------------------------------LPPVDWLILL 191 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCCCcccc------------------------------CchhhHHHHH
Confidence 32222221111111111111 1111 0000000 000 0000111 22
Q ss_pred HHHHHHHHHHHHHHHhch--hhhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccch-hHH
Q 043446 271 LILTGVMISGFITDAIGT--HSVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTS-TWM 346 (784)
Q Consensus 271 ~~l~~~l~~~~~a~~~G~--~~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~-~~~ 346 (784)
+.+...++.+.+...+++ ...+|+++.|..+.- ....-++-+-+..+. .-+.=..+|.++|-..+.... ...
T Consensus 192 ~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~~va----~~~iG~~IG~~f~~~~l~~~~r~~~ 267 (352)
T COG3180 192 LLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLLAVA----QALIGALIGSRFDRSILREAKRLLP 267 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHHHHH----HHHHHHHHcccccHHHHHHhHhhcc
Confidence 333333333334443333 245566666655554 212222222222222 123346788888866554321 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhcc
Q 043446 347 ITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKD 400 (784)
Q Consensus 347 ~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~ 400 (784)
..++.++..++.-...+++..++.+.++.++..- ..|-|.-+++......+
T Consensus 268 ~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~La---~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 268 AILVSIIALMAIAAGMAGLLSWLTGIDLNTAYLA---TSPGGLDTMAAIAAALG 318 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---cCCCcHHHHHHHHHHcC
Confidence 2344444455555666777788888888775543 67888887777766555
No 70
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.31 E-value=0.021 Score=66.61 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=84.2
Q ss_pred CCCceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHH
Q 043446 451 DSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 530 (784)
Q Consensus 451 ~~e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 530 (784)
...-||+||+......+++++-+..++.. ..+..+++|+........+ ++..+++...++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~~~~~~~~~------------------~~~~~~l~~~~~ 305 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVETPELHRLS------------------EKEARRLHENLR 305 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEecccccccc------------------HHHHHHHHHHHH
Confidence 44579999999999999999988888854 4566899998742221111 123344544444
Q ss_pred HhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCC-ceEE
Q 043446 531 NYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPC-SVGI 607 (784)
Q Consensus 531 ~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc-~V~i 607 (784)
-.++. +-. ..+..+ .++.+.|.++|++.++.-||+|-+.+++..... -|++.+++++.+|- .|-|
T Consensus 306 Lae~l--Gae--~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~idv~i 371 (890)
T COG2205 306 LAEEL--GAE--IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPGIDVHI 371 (890)
T ss_pred HHHHh--CCe--EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCCceEEE
Confidence 44443 323 334444 689999999999999999999988764322211 47889999988774 3444
No 71
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.27 E-value=0.1 Score=61.76 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC--cchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhH
Q 043446 268 YVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG--PLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTW 345 (784)
Q Consensus 268 ~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~--~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~ 345 (784)
...+.++.+.+...++..+|+++++|=.++|++++.. ..-. -.+.++.+. .+-..++...+|+.+|++.+.. ..
T Consensus 9 ~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~la-elGvv~LlF~iGLEl~~~~l~~--~~ 84 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHFA-EFGVVLMLFVIGLELDPQRLWK--LR 84 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHH--HH
Confidence 3456666777788889999999999999999999751 1111 123355554 6667777889999999987753 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchh
Q 043446 346 MITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKG 388 (784)
Q Consensus 346 ~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG 388 (784)
..++.+-..-++.-++..+..+++++.+|..++.+|..+..-.
T Consensus 85 ~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 85 RSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2222222222222233344566778999999999888665443
No 72
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.20 E-value=2.4 Score=45.87 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHhch--hhhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccc-hh
Q 043446 269 VCLILTGVMISGFITDAIGT--HSVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGT-ST 344 (784)
Q Consensus 269 ~~~~l~~~l~~~~~a~~~G~--~~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~-~~ 344 (784)
+.+.+..+...+++++.+++ ..++|+++.+.++.. ......+-+.+.... . -+.=..+|.+++...+... ..
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~a-q---v~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNAA-Q---VLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH-H---HHHHHHHHccccHHHHHHHHHH
Confidence 34444555666677776666 466777777766654 111112222222222 1 1234678888887766532 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHH
Q 043446 345 WMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIIT 424 (784)
Q Consensus 345 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~ 424 (784)
++..++..+..+..-.+..++..++.++++.+++. .+.|-|.-++.+.....+.+.---..+..+=+ +....+.|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl--~~v~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQVVRL--LFVLLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHHHHH--HHHHHHHH
Confidence 34445555566666777788889999998877554 36899988888777666554322223333211 11223455
Q ss_pred HHHHhhcc
Q 043446 425 PIVTSIYK 432 (784)
Q Consensus 425 pl~~~l~~ 432 (784)
++.+++.|
T Consensus 308 ~~~r~~~r 315 (318)
T PF05145_consen 308 FIARWLRR 315 (318)
T ss_pred HHHHHHHH
Confidence 66666544
No 73
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.15 E-value=0.65 Score=49.77 Aligned_cols=85 Identities=25% Similarity=0.382 Sum_probs=54.8
Q ss_pred hhhhHHHHHHhhcc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHhcchh-HHHHHHHH
Q 043446 320 GLLLPLFFAISGLK-TDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIRE-GVTLGLLMNTKG-LVEMIVLN 396 (784)
Q Consensus 320 ~~~~plfF~~~G~~-~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~-~~~lg~~m~~rG-~~~l~~~~ 396 (784)
.+.-|+ .+.+|.. +|+..+.+..+|..+ ++.+...++-..+.++.+|+.++-+-| +...|+.|+.+| .-.+++++
T Consensus 327 ~~t~~L-m~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLs 404 (438)
T COG3493 327 NLTWPL-MAGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLS 404 (438)
T ss_pred hhHHHH-HHhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhh
Confidence 333444 3466766 888877765556533 344455667788889999999965555 555558888876 44566666
Q ss_pred hhccCCcCCh
Q 043446 397 VGKDQKVLDD 406 (784)
Q Consensus 397 ~~~~~~~i~~ 406 (784)
.+-+.++++-
T Consensus 405 Aa~RM~LmpF 414 (438)
T COG3493 405 AADRMELMPF 414 (438)
T ss_pred hcchhccccH
Confidence 6666666553
No 74
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=96.13 E-value=0.25 Score=49.08 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHh-h-hcCCCchhHHHHHHHHHHhhccH-HHHH
Q 043446 105 VGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILH-K-KNQGMNQGTFVLFLGVALSVTAF-PVLA 181 (784)
Q Consensus 105 igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~al~lg~~ls~Ts~-~vv~ 181 (784)
+.+.+.||..|++++++++++..|+...+ +.+.+..+++.=++++.+. . ++.+ ..+..|..+...+| +..+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l-~~~l~~~~~i~Plla~~l~~~~~~~~-----~~~~~Gl~l~~~~P~~~~s 75 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLL-LIGLLAQFLIMPLLAFGLAWLLLPLS-----PALALGLLLVAACPGGPAS 75 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH-HHTT-------HHHHHHHHHHHHS-B-THH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHhcCCcHHHH
Confidence 45778999999999999999887665443 2233333433333333333 1 2221 23344444322222 2233
Q ss_pred HHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 182 RILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLA--SLWVILSGAAFVIFCVFVVRPAICWMIR 256 (784)
Q Consensus 182 ~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~l~~ 256 (784)
.+...+. +.+.. +..+...++.+.+.++.-+...+......... ..+..+......+++-.+.+.+.++..+
T Consensus 76 ~~~t~l~--~Gd~~-ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p 149 (187)
T PF01758_consen 76 NVFTYLA--GGDVA-LSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLP 149 (187)
T ss_dssp HHHHHHT--T--HH-HHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred HHHHHHh--CCCcc-cccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence 3444332 22222 56666777777777777666555433322111 1334444444444444444444444444
No 75
>PRK10490 sensor protein KdpD; Provisional
Probab=96.11 E-value=0.037 Score=68.56 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=80.2
Q ss_pred cCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHH
Q 043446 622 NQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFR 701 (784)
Q Consensus 622 ~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (784)
+....||+|+.+|+|.++..++.|.|||++.+++++++||.+++... .. +.+++...+.+ ++.
T Consensus 247 ~~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~------~~----------~~~~~~l~~~~-~lA 309 (895)
T PRK10490 247 WHTRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR------LP----------EKKRRAILSAL-RLA 309 (895)
T ss_pred CCcCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc------CC----------HHHHHHHHHHH-HHH
Confidence 34557899999999999999999999999999999999998653210 01 22333333444 355
Q ss_pred hhccCCCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEE
Q 043446 702 MKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVL 781 (784)
Q Consensus 702 ~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svL 781 (784)
+++.. ++.....+|.++++....+ ..+.+.||||++++. .| . --|++.|.|.... .+.-|.
T Consensus 310 ~~lGa----~~~~~~~~dva~~i~~~A~-~~~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~--~~idi~ 370 (895)
T PRK10490 310 QELGA----ETATLSDPAEEKAVLRYAR-EHNLGKIIIGRRASR---------RW--W-RRESFADRLARLG--PDLDLV 370 (895)
T ss_pred HHcCC----EEEEEeCCCHHHHHHHHHH-HhCCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhC--CCCCEE
Confidence 55532 2444444555544443222 445899999999872 24 1 1367888777542 333444
Q ss_pred EE
Q 043446 782 VV 783 (784)
Q Consensus 782 vv 783 (784)
||
T Consensus 371 iv 372 (895)
T PRK10490 371 IV 372 (895)
T ss_pred EE
Confidence 43
No 76
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.99 E-value=0.17 Score=53.47 Aligned_cols=129 Identities=18% Similarity=0.312 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCCcch-hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHH
Q 043446 275 GVMISGFITDAIGTHSVFGAFVFGLVIPNGPLG-LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVII 353 (784)
Q Consensus 275 ~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~-~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~ 353 (784)
.....+.+++.++++.+++-.++|++++..-.+ -+-.+.++.+. .+-..++....|+++|++.+.+ .+.....+..
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~-~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~~ 79 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLA-EFGVILLMFLIGLELDLERLWK--LRKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHH-HHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHHH
Confidence 345567788899999999999999999752111 01112344444 5666677889999999988764 3333333333
Q ss_pred HHHHHH-HHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhh
Q 043446 354 LACAGK-IAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDES 408 (784)
Q Consensus 354 ~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~ 408 (784)
..++.- +...+...++++.++.+++.+|..+.+-. .-+...+..+.+..+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~ 133 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPF 133 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChH
Confidence 333333 44445567778999999999999877543 234444555555554443
No 77
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.93 E-value=0.28 Score=52.85 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043446 108 LYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILH 153 (784)
Q Consensus 108 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~ 153 (784)
..++|-.|-.+|++...+..||...+.+.-+.+..+++.+...++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 3688999999999998888888887777777777777666655543
No 78
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.70 E-value=0.25 Score=58.03 Aligned_cols=134 Identities=15% Similarity=0.205 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchh-HHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHH
Q 043446 270 CLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGL-TLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMIT 348 (784)
Q Consensus 270 ~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~-~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~ 348 (784)
..++..++++..++..++++.++|=.++|++++..-++. .-.+.++.+. .+-+.++...+|+++|++.+.. .....
T Consensus 12 ~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la-~lGli~llF~~Gle~d~~~l~~--~~~~~ 88 (558)
T PRK10669 12 VGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELA-ELGVILLMFGVGLHFSLKDLMA--VKSIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHH-HHHHHHHHHHhHhcCCHHHHHH--HhhHH
Confidence 344556667778888899999999999999997511110 0112344443 5556667778899999987753 12111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhh
Q 043446 349 LLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDES 408 (784)
Q Consensus 349 ~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~ 408 (784)
....+...+.=++..+...+.++.++.+++.+|..++.-. ..++.....+.|.++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS--~~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAS--TVVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH--HHHHHHHHHhcCcccCcc
Confidence 1111222222233444556677899999999988766533 234555666667665543
No 79
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.66 E-value=0.47 Score=56.16 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=66.5
Q ss_pred HHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhH
Q 043446 51 RLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKA 130 (784)
Q Consensus 51 ~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~ 130 (784)
....++.+.+|+..++|-.++|++++.+-. . ..-...++.+..+-+.++....|+.+|++.+...+...
T Consensus 226 l~~a~l~~~~Gls~~LGAFlaGl~l~~s~~------~-----~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~i 294 (601)
T PRK03659 226 LGSALFMDALGLSMALGTFIAGVLLAESEY------R-----HELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWV 294 (601)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHhcCCch------H-----HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHH
Confidence 344566778899999999999999985311 0 11123456666777788888999999999998776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhc
Q 043446 131 LAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVT 175 (784)
Q Consensus 131 ~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~T 175 (784)
..+.+..++.=++.+++.+.+ ++.++ ..++.+|..++..
T Consensus 295 l~~~~~~l~~K~~~~~~~~~~---~g~~~---~~al~~g~~L~~~ 333 (601)
T PRK03659 295 LISVVVLVAVKGLVLYLLARL---YGLRS---SERMQFAGVLSQG 333 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hCCCH---HHHHHHHHHHhcc
Confidence 333333222223333333333 33333 5577777776643
No 80
>PRK03818 putative transporter; Validated
Probab=95.60 E-value=0.42 Score=55.70 Aligned_cols=131 Identities=19% Similarity=0.279 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-HcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhh
Q 043446 38 LFILQLTLVVVTTRLLVLV-LKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGV 116 (784)
Q Consensus 38 ~~l~~l~lil~~~~l~~~l-~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gl 116 (784)
.-++.+++.+.++++++.+ ++.+++- +.|-+++|+++|-.. +.+ ..-. ......++.++|+.+|+|.+|+
T Consensus 6 ~~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~----~~~-~~~~---~~~~~~~~~~~gl~lFv~~vGl 76 (552)
T PRK03818 6 LTVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV----SQF-GLTL---DSDMLHFIQEFGLILFVYTIGI 76 (552)
T ss_pred HHHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc----ccc-Cccc---ChHHHHHHHHHHHHHHHHHHhh
Confidence 3345555666666666653 2334444 488999999999521 000 0001 2346677999999999999999
Q ss_pred ccChhHHHh---chhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH-HhhccHHHHHHHHH
Q 043446 117 EMDISAIRR---TGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA-LSVTAFPVLARILA 185 (784)
Q Consensus 117 e~d~~~l~~---~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~-ls~Ts~~vv~~il~ 185 (784)
+.-++.+.. .+.+...+++.-.+++.++++...++ ++.++ ....|+. -+.|++|.+....+
T Consensus 77 ~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 77 QVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKL---FGIPL-----PVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred cccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCH-----HHHHHHhhccccccHHHHHHHH
Confidence 999877654 44455555555555556565554333 33332 3334433 36677777766554
No 81
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.59 E-value=0.49 Score=45.97 Aligned_cols=127 Identities=23% Similarity=0.277 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHh-H-cccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhH
Q 043446 45 LVVVTTRLLVLV-L-KPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISA 122 (784)
Q Consensus 45 lil~~~~l~~~l-~-~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~ 122 (784)
+.+.++.+++.+ . +++++-...|-+++|+++|.. +...+.. . .....+.+.++|+.++++.+|++--++.
T Consensus 4 l~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~--~~~~~~~---~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F 75 (169)
T PF06826_consen 4 LGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGAL--GRTGPIF---L---PISAPSFLRQLGLALFLAAVGLSAGPGF 75 (169)
T ss_pred HHHHHHHHhcceeeccceeccccHHHHHHHHHHHHh--hhccCCC---C---CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 3 667777777999999999953 2111000 1 2346678999999999999999988765
Q ss_pred H---HhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHh
Q 043446 123 I---RRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVAL-SVTAFPVLARILAE 186 (784)
Q Consensus 123 l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~l-s~Ts~~vv~~il~e 186 (784)
+ |+.+.+...+++.-.++|.+++...++++.+ .+ .....|... +.|++|......+.
T Consensus 76 ~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~--l~-----~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 76 FSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFK--LN-----PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CC-----HHHHHHHHHccccCcHHHHHHHHh
Confidence 5 4555666666777777777777777764432 22 133444433 66777777776554
No 82
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.38 Score=53.73 Aligned_cols=139 Identities=18% Similarity=0.279 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C----cchhHHHHHHHHHHHhhhhHHHHHHhhcccccccccc
Q 043446 267 FYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-G----PLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHG 341 (784)
Q Consensus 267 ~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~----~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~ 341 (784)
..+...+..+....++++.+|+++++|=.++|+++.. . ...++..+-+..+. .-++...+|+.+|++.+..
T Consensus 9 ~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelG----vi~LlF~~GLE~~~~~l~~ 84 (397)
T COG0475 9 LQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELG----VVFLLFLIGLEFDLERLKK 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHh----HHHHHHHHHHCcCHHHHHH
Confidence 3456666777777799999999999999999999996 2 12333333344443 3445678999999988864
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHH
Q 043446 342 TSTWMITLLVIILACAGKIAGTLLVSL-MYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIM 412 (784)
Q Consensus 342 ~~~~~~~~~~~~~~~~~K~~~~~l~~~-~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~l 412 (784)
..... ........+..=++....... .++.++.+++.+|..+..-.. -+.+.+..|.|....+.-..+
T Consensus 85 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~ 153 (397)
T COG0475 85 VGRSV-GLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLI 153 (397)
T ss_pred hchhh-hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHH
Confidence 22121 222222222222222211222 589999999999987665432 144445555555555544443
No 83
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.45 E-value=0.21 Score=49.52 Aligned_cols=129 Identities=24% Similarity=0.399 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccCh-----hHHHhchhhHHHHHHHHHHH
Q 043446 66 ISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDI-----SAIRRTGKKALAIAVGGMTL 140 (784)
Q Consensus 66 v~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~~ 140 (784)
++.+++|+++|-..... ....+...+..+.+++|.+|+++-. +.+++.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678899988542211 1122667888999999999998854 35666778999998888888
Q ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 141 PFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAI 217 (784)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~ 217 (784)
+++.+.+.+.++.. ++ ..++.+++-+. =......++.|++ +.+.|.++.-+=++-+++++++.-++.
T Consensus 69 Sllgg~l~~~ll~~---~~---~~~lav~sG~G--wYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLLGL---SL---KESLAVASGFG--WYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHHhcC---CH---HHHHHHHccCc--HHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776632 22 33444443331 1112222334433 568888887777777777776665544
No 84
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.38 E-value=0.4 Score=51.34 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHH----HhchhhhHHHHHHHhhcCC--CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchh
Q 043446 271 LILTGVMISGFITD----AIGTHSVFGAFVFGLVIPN--GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTST 344 (784)
Q Consensus 271 ~~l~~~l~~~~~a~----~~G~~~~lgaf~aGl~l~~--~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~ 344 (784)
+.+.+.....++++ ..++++.+=|.+.|+++.| ....+...+-++.. ...++.+=-+..|.++++.++.+ ..
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~-~G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILA-LG 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHH-hC
Confidence 34444445555555 3678888999999999997 33444455545433 36777888899999999998875 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccC
Q 043446 345 WMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQ 401 (784)
Q Consensus 345 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~ 401 (784)
+......++...+.=.++.++..+.+|++++.+..++...+.=|.-+++...-..+.
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 322333333333444444445559999999999999998887776666555544433
No 85
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.25 E-value=0.33 Score=57.06 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcch---hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHH
Q 043446 270 CLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLG---LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWM 346 (784)
Q Consensus 270 ~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~---~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~ 346 (784)
.+++.+..++..+++.+|++.+++-.++|++++....+ ..-.+..+.+ ..+.++++....|+++|+..+.. .+.
T Consensus 12 ~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~ 88 (562)
T PRK05326 12 ALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALG 88 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHH
Confidence 34445555566777788999999999999998862111 1111233444 47888888899999999988874 444
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCCCchhHHHHHHHhcchhHH
Q 043446 347 ITLLVIILACAGKIAG-TLLVSLMYQMPIREGVTLGLLMNTKGLV 390 (784)
Q Consensus 347 ~~~~~~~~~~~~K~~~-~~l~~~~~~~~~~~~~~lg~~m~~rG~~ 390 (784)
....+....++.-.+. .+...++++++|.+++.+|..+++-...
T Consensus 89 ~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 89 PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 3443333333333333 4555677899999999999987776543
No 86
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.22 E-value=1.3 Score=47.94 Aligned_cols=118 Identities=15% Similarity=0.256 Sum_probs=77.0
Q ss_pred chhhhHHHHHHHhhcCC-CcchhHHHHHHHHH---HHhhhhHHHHHHhhcc-ccccccccchhHHHHHHHHHHHHHHHHH
Q 043446 287 GTHSVFGAFVFGLVIPN-GPLGLTLIEKLEDF---VSGLLLPLFFAISGLK-TDISSIHGTSTWMITLLVIILACAGKIA 361 (784)
Q Consensus 287 G~~~~lgaf~aGl~l~~-~~~~~~l~~~l~~~---~~~~~~plfF~~~G~~-~d~~~l~~~~~~~~~~~~~~~~~~~K~~ 361 (784)
++|+..-..++|.++.. .-..++++++...+ ...-+.+..++-+|+. +|++.+.+..+|. .+++++..+++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHH
Confidence 67888888888888887 44445555554333 3333444445556766 7887776533343 45556667778889
Q ss_pred HHHHHHHHhCC-CchhHHHHHHHhcchh-HHHHHHHHhhccCCcCC
Q 043446 362 GTLLVSLMYQM-PIREGVTLGLLMNTKG-LVEMIVLNVGKDQKVLD 405 (784)
Q Consensus 362 ~~~l~~~~~~~-~~~~~~~lg~~m~~rG-~~~l~~~~~~~~~~~i~ 405 (784)
+.++.+|+.|+ |...+...|+.|+.+| .-.+++...+.+.+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 99999999996 5555566676777765 45566666666666654
No 87
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.93 E-value=6.2 Score=41.99 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHhcchh-HHHHHHHHhhc
Q 043446 357 AGKIAGTLLVSLMYQMPIREGVTLGLLMNTKG-LVEMIVLNVGK 399 (784)
Q Consensus 357 ~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG-~~~l~~~~~~~ 399 (784)
+.-+...++.++.+|.+.+|+..++...+.|- ..++.++....
T Consensus 206 ~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 206 LAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred HHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHHHHhc
Confidence 34455666777888998888887777666654 44555554433
No 88
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.66 E-value=0.36 Score=51.43 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=82.9
Q ss_pred HHHHhchhhhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHH
Q 043446 282 ITDAIGTHSVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKI 360 (784)
Q Consensus 282 ~a~~~G~~~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~ 360 (784)
..+..|+++.+=|.+.|+++.. .+...+...-++.. ...++.+=.+..|++++++++.+. .+. .+.+.+..+..-+
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSSTF 107 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHHH
Confidence 4445667788999999999997 55555555555444 366777778999999999988752 222 3444555556677
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhc
Q 043446 361 AGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGK 399 (784)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~ 399 (784)
+.++..++++|+|++.++.+|..-+.=|.-+++...-..
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi 146 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI 146 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence 778888889999999999999987777766555554433
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.63 E-value=0.2 Score=58.48 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHh-HcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccC
Q 043446 41 LQLTLVVVTTRLLVLV-LKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMD 119 (784)
Q Consensus 41 ~~l~lil~~~~l~~~l-~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d 119 (784)
+.+++++.++++++.+ .+.+++-.+.|-+++|+++|-.... + | +.+.++|+++|+|.+|++.-
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i--------~-------~~v~~~gl~lFvy~vG~~~G 76 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-I--------D-------PGVKAVFFALFIFAIGYEVG 76 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-C--------C-------hHHHHHHHHHHHHHhhhccC
Confidence 3345555555555555 4557777788999999999964321 1 1 23667999999999999999
Q ss_pred hhHHHhchhhHHHHHHHHHHH
Q 043446 120 ISAIRRTGKKALAIAVGGMTL 140 (784)
Q Consensus 120 ~~~l~~~~~~~~~ia~~~~~~ 140 (784)
++.++...|+.+.+.+.++++
T Consensus 77 p~Ff~~l~~~g~~~~~~a~~~ 97 (562)
T TIGR03802 77 PQFFASLKKDGLREIILALVF 97 (562)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 988876655555554444443
No 90
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.33 E-value=8.9 Score=41.12 Aligned_cols=104 Identities=16% Similarity=0.238 Sum_probs=67.5
Q ss_pred HcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHH
Q 043446 57 LKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVG 136 (784)
Q Consensus 57 ~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 136 (784)
....++|..+--|+.|+++|.. ...++. .. ..-.-.-..+-++|++ +.|.+++++++...+.+.+.+-..
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l--~~~~~~---~~-~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGIL--PQIPAQ---TS-AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhcc--ccchhh---hc-cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHH
Confidence 4457799999999999999932 222110 00 0111122344555655 569999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhcc
Q 043446 137 GMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTA 176 (784)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts 176 (784)
.+..++++++.++.++ +.++ ..++++|+--|+..
T Consensus 102 ~l~~t~~~~~~lg~~l---gld~---~~a~Lia~GssICG 135 (334)
T COG2855 102 TLSSTFLFAYFLGKLL---GLDK---KLALLIAAGSSICG 135 (334)
T ss_pred HHHHHHHHHHHHHHHh---CCCH---HHHHHHHccchhhH
Confidence 7777777777666643 4454 45666666555443
No 91
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.31 E-value=0.84 Score=54.47 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=49.5
Q ss_pred HhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchhHHHHHHHhcchhHH
Q 043446 319 SGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLM--YQMPIREGVTLGLLMNTKGLV 390 (784)
Q Consensus 319 ~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~--~~~~~~~~~~lg~~m~~rG~~ 390 (784)
..+.+++-....|++++...+.. .|..+..+++.+...-++.+.+.+++ .+++|..++.+|.++.|-.-+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 46777777889999999988873 56555444444444445555555543 499999999999999987643
No 92
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.27 E-value=0.2 Score=58.93 Aligned_cols=119 Identities=15% Similarity=0.253 Sum_probs=73.8
Q ss_pred cCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHH
Q 043446 622 NQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFR 701 (784)
Q Consensus 622 ~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (784)
+....||+|+.+|++.++.-++.|.|+|.+.++++|++|+..++.... . +.+++.-++.+ ++.
T Consensus 245 ~~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~------~----------~~~~~~l~~~~-~La 307 (890)
T COG2205 245 WAARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL------S----------EKEARRLHENL-RLA 307 (890)
T ss_pred ccccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc------c----------HHHHHHHHHHH-HHH
Confidence 344579999999999999999999999999999999999987654210 0 22222222222 333
Q ss_pred hhccCCCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcC
Q 043446 702 MKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASS 772 (784)
Q Consensus 702 ~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~ 772 (784)
+++... .....-.|-++++... +...+.--||+|++++ +.|-+.-. |.+.|-|+..
T Consensus 308 e~lGae----~~~l~~~dv~~~i~~y-a~~~~~TkiViG~~~~---------~rw~~~~~-~~l~~~L~~~ 363 (890)
T COG2205 308 EELGAE----IVTLYGGDVAKAIARY-AREHNATKIVIGRSRR---------SRWRRLFK-GSLADRLARE 363 (890)
T ss_pred HHhCCe----EEEEeCCcHHHHHHHH-HHHcCCeeEEeCCCcc---------hHHHHHhc-ccHHHHHHhc
Confidence 444322 2222223333322222 2234478899999987 34543211 8888888764
No 93
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.18 E-value=1.2 Score=48.33 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHH-----hchhhhHHHHHHHhhcCC-C--cchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccch
Q 043446 272 ILTGVMISGFITDA-----IGTHSVFGAFVFGLVIPN-G--PLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTS 343 (784)
Q Consensus 272 ~l~~~l~~~~~a~~-----~G~~~~lgaf~aGl~l~~-~--~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~ 343 (784)
.+.+++.+.++++. .++++.+=+.+.|++++| . +..+....-++ +....++-+=-+..|+++++.++.+ .
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~-~ 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD-V 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-h
Confidence 33444444455443 478888889999999988 2 22233333333 3335566666889999999998864 2
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhc
Q 043446 344 TWMITLLVIILACAGKIA-GTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGK 399 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~-~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~ 399 (784)
.+. .+.+.+.....-+. +.++..+.+|++++.+..++...+-=|.-+++...-..
T Consensus 88 G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i 143 (335)
T TIGR00698 88 GPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI 143 (335)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence 232 22332333333344 44555589999999999999887777766555544333
No 94
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.77 E-value=1.2 Score=54.54 Aligned_cols=43 Identities=5% Similarity=0.016 Sum_probs=33.4
Q ss_pred cCcceeEEEeccCCcchHHHHHHHHHH--hcCCCeEEEEEEeeec
Q 043446 622 NQVTHNIAVLFFGGPDDREALAYAWRM--SEHPGNNLTVMRFIAA 664 (784)
Q Consensus 622 ~~~~~~I~v~~~gg~~~~~al~~a~~l--a~~~~~~ltv~~~~~~ 664 (784)
.+.-.||++++-+..+-...+.++... .++....++++|+++.
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL 499 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVEL 499 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEee
Confidence 344569999999888888888887665 4556789999999874
No 95
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.76 E-value=0.51 Score=45.09 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=66.7
Q ss_pred CChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchh----hHHHHHHHH
Q 043446 62 QPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGK----KALAIAVGG 137 (784)
Q Consensus 62 ~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~ 137 (784)
+-...|-+++|+++|.. +...+..- -.| ......+.++|+.++++.+|++--.+.+....+ ....++..-
T Consensus 21 LG~~~G~L~vgL~~G~~--~~~~p~~~-~~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHF--GATGPLTW-YIP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ecccHHHHHHHHHHHhc--cccCCcce-ecC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 33377899999999963 32211110 112 236677899999999999999998876654333 233333444
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH-HhhccHHHHHHHHHhcC
Q 043446 138 MTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA-LSVTAFPVLARILAELK 188 (784)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~-ls~Ts~~vv~~il~el~ 188 (784)
.++|.+++..+...+ ++.++ ....|.+ -+.|++|......+..+
T Consensus 95 ~~~~~~~~~~~~~~~--~~~~~-----~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 95 TVVPTLLVAVALIKL--LRINY-----ALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHH--hCCCH-----HHHHHHHhccccChHHHHHHHHHhc
Confidence 444444444444333 33322 3444444 46788888877765443
No 96
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.15 E-value=1.1 Score=42.96 Aligned_cols=99 Identities=11% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhHcccCCC--hhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 043446 46 VVVTTRLLVLVLKPFRQP--RVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAI 123 (784)
Q Consensus 46 il~~~~l~~~l~~rl~~P--~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l 123 (784)
.+.++.+.+.+++++|+| .++|.++++.++.-. +..+ .-.| ..+.+++.+++-..+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~----~~~P-------~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLE----ITLP-------PWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCcc----CCCC-------HHHHHHHHHHHHHHHHccCCHHHH
Confidence 456677888999999998 577777777766622 2111 0112 245566777777899999999998
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcCC
Q 043446 124 RRTGKKALAIAVGGMTLPFVIGGCFSFILHK-KNQG 158 (784)
Q Consensus 124 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~-~~~~ 158 (784)
++..+... ..+...++...++...++++.+ .+.+
T Consensus 70 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~~~~~ 104 (156)
T TIGR03082 70 AELKRLWP-AALLSTVLLLALSALLAWLLARLTGVD 104 (156)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 87665433 3445556666667777777766 4544
No 97
>PRK04972 putative transporter; Provisional
Probab=93.13 E-value=1.3 Score=51.78 Aligned_cols=121 Identities=25% Similarity=0.271 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHh-HcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccC
Q 043446 41 LQLTLVVVTTRLLVLV-LKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMD 119 (784)
Q Consensus 41 ~~l~lil~~~~l~~~l-~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d 119 (784)
+.+++.+.++++++.+ ++.+++-...|-+++|+++|-.... .| ..+.++|+.+|+|.+|++.-
T Consensus 15 ~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~G 78 (558)
T PRK04972 15 LLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAG 78 (558)
T ss_pred HHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhh
Confidence 3455555666666655 4557777788999999999964221 11 12358999999999999999
Q ss_pred hhHHHh---chhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH-HhhccHHHHHHHHH
Q 043446 120 ISAIRR---TGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA-LSVTAFPVLARILA 185 (784)
Q Consensus 120 ~~~l~~---~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~-ls~Ts~~vv~~il~ 185 (784)
++.+.. .+.+...+++...+++.++++..+++ ++.++ ....|+. -+.|++|.+....+
T Consensus 79 p~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 79 PNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKL---FGWDI-----GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCH-----HHHHHHhhccccCcHHHHHHHH
Confidence 877654 44455555555555555555554444 33332 2333333 35577777666544
No 98
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.51 E-value=1.4 Score=51.66 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=73.9
Q ss_pred cCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHH---HhchhhHHHHHHH
Q 043446 60 FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAI---RRTGKKALAIAVG 136 (784)
Q Consensus 60 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~ 136 (784)
+.+-...|-+++|+++|-. +...+.. +-.| ......+.++|+.+|++.+|++--++.+ ++.+.+...+++.
T Consensus 413 ~~lg~~~g~l~~gl~~g~~--~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~ 486 (562)
T TIGR03802 413 LTLGTGGGALISGLVFGWL--RSKHPTF-GNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIV 486 (562)
T ss_pred eeehhhHHHHHHHHHHHHh--cccCCcc-eecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 4445567889999999853 2221100 0122 2356678999999999999999887655 4555666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH-HhhccHHHHHHHHHhcC
Q 043446 137 GMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA-LSVTAFPVLARILAELK 188 (784)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~-ls~Ts~~vv~~il~el~ 188 (784)
-.++|.++++.+++++.+ .+ ....+|++ -+.|++|......+..+
T Consensus 487 ~~~~~~~~~~~~~~~~~~--~~-----~~~~~G~~aG~~t~t~~l~~a~~~~~ 532 (562)
T TIGR03802 487 VTILPLIITMLIGKYVLK--YD-----PALLLGALAGARTATPALGAVLERAG 532 (562)
T ss_pred HHHHHHHHHHHHHHHHhC--CC-----HHHHHHHhhccCCCcHHHHHHHHhcC
Confidence 666777777766644433 22 23455544 57788888777655443
No 99
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.36 E-value=1.4 Score=51.34 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchh--HHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHH
Q 043446 272 ILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGL--TLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITL 349 (784)
Q Consensus 272 ~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~--~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~ 349 (784)
.++.+.+...+++.+++++.++-.++|++++..+... .+.. +.+ ..+++|......|+++|+..+.. .+..+.
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~-~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~ 80 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIV-LFLFLPPLLFEAAMNTDLRELRE--NFRPIA 80 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHH-HHHHHHHHHHHHHhcCCHHHHHH--HHHHHH
Confidence 3344444456677778888888888888877421111 0111 112 35788888889999999998874 443333
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHH
Q 043446 350 LVIILACAG-KIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEM 392 (784)
Q Consensus 350 ~~~~~~~~~-K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l 392 (784)
.+.+...+. -.+.++...+..++||..++.+|..+++-..+..
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 333333333 3333444444678999999999999998876553
No 100
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.12 E-value=5.4 Score=38.28 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhchh--hhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccc-hhHHHH
Q 043446 273 LTGVMISGFITDAIGTH--SVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGT-STWMIT 348 (784)
Q Consensus 273 l~~~l~~~~~a~~~G~~--~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~-~~~~~~ 348 (784)
+.++...+++.+.+|+. .++|+.+++.++.- ....-+.-+.+.... .-+.=..+|.+++...+.+. ..+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~~----qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLALA----QVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH----HHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44555566677777775 78888888887764 222222223332222 22334788999987776542 234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhcc
Q 043446 349 LLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKD 400 (784)
Q Consensus 349 ~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~ 400 (784)
+...+..++.-.+..++..+..++++.+++. ...|-|.-++.......+
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L---a~~PGGl~~m~~~A~~~g 128 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAFL---ATSPGGASEMAALAAELG 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCchHHHHHHHHHHhC
Confidence 5556666667788888899999999888753 357888777776655443
No 101
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=90.68 E-value=2.7 Score=46.44 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred hhhhHHHHHHhhccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH-H-hcchhHHHHHHHH
Q 043446 320 GLLLPLFFAISGLKTDISSIHGTS-TWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGL-L-MNTKGLVEMIVLN 396 (784)
Q Consensus 320 ~~~~plfF~~~G~~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~-~-m~~rG~~~l~~~~ 396 (784)
++++-.||..+|+..++..+.... .......+.........+.....+..++.+..-.+..|- . .+-.| .+.++..
T Consensus 67 ~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhG-TAaa~g~ 145 (368)
T PF03616_consen 67 DFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHG-TAAAFGP 145 (368)
T ss_pred HHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCcc-HHHHHHH
Confidence 566778999999999988775421 111122222233445666666667778887766655431 2 22233 3344445
Q ss_pred hhccC-CcCChhhHHHH--HHHHHHHHHhHHHHHHhhccccc
Q 043446 397 VGKDQ-KVLDDESFAIM--VIVAVVMTGIITPIVTSIYKPAR 435 (784)
Q Consensus 397 ~~~~~-~~i~~~~~~~l--v~~~vv~t~i~~pl~~~l~~~~~ 435 (784)
...+. |.-+.....+. .+-.+.-.++..|+.+|+.++.+
T Consensus 146 ~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 146 TFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555 55443333322 12223334566789988876544
No 102
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=90.60 E-value=6.3 Score=43.92 Aligned_cols=169 Identities=11% Similarity=0.108 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHhHcc--cCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc
Q 043446 40 ILQLTLVVVTTRLLVLVLKP--FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE 117 (784)
Q Consensus 40 l~~l~lil~~~~l~~~l~~r--l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle 117 (784)
+..+.+.+.+++.+...+++ +.+|..++-+++|+++.+.. .... . . .-..+.++.++++.+-+++-.+=+.
T Consensus 221 l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~----~-~-~~~~~~i~~I~~~sLdlfl~~Alms 293 (398)
T TIGR00210 221 IALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKK----F-P-WVAERAVSVIGNVSLSLFLAIALMS 293 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhC----c-c-ccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556667777776664 78999999999999999642 1111 0 0 1123488999999999999999999
Q ss_pred cChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch-hHHHHHHHHHHhhccH--HHHHHHHHhcCccCChh
Q 043446 118 MDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQ-GTFVLFLGVALSVTAF--PVLARILAELKLINTEL 194 (784)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~al~lg~~ls~Ts~--~vv~~il~el~~~~s~~ 194 (784)
+++..+...+-+.+.+.+.++++..+....+.+-+ +|.+-+. -..+-..|..+..|.. +-.-.+-++.|-.++-.
T Consensus 294 L~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~--mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af 371 (398)
T TIGR00210 294 LQLWELADLAGPIALILLVQVMFMALYAIFVTFRL--MGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF 371 (398)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh--ccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence 99999999999999999999998765544333322 3322100 0112345555544433 33334445556434333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043446 195 GRIAMSSALINDMCAWVLLAFAI 217 (784)
Q Consensus 195 g~l~l~~a~i~D~~~~~ll~~~~ 217 (784)
=-+=+-.+.+-|++..++...++
T Consensus 372 ~ivPlvgaf~id~~n~~~i~~f~ 394 (398)
T TIGR00210 372 IVVPLVGAFFIDIINALVIKQFL 394 (398)
T ss_pred ehhhhHHHHHHHHhhHHHHHHHH
Confidence 33445668888888877666553
No 103
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=90.44 E-value=3.4 Score=44.72 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhHcccCCCh--hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc
Q 043446 40 ILQLTLVVVTTRLLVLVLKPFRQPR--VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE 117 (784)
Q Consensus 40 l~~l~lil~~~~l~~~l~~rl~~P~--iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle 117 (784)
..++.+++.++...+++++|+|+|. ++|-++.+.++.-...... -.| .. +..++.+++=-.+|.+
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~------~~P----~~---l~~~aqv~iG~~iG~~ 220 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSF------SLP----PW---LVNAAQVLIGASIGSR 220 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCC------CCC----HH---HHHHHHHHHHHHHHcc
Confidence 3445666777888999999999975 6777777776664321111 112 23 4445556666699999
Q ss_pred cChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043446 118 MDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHK 154 (784)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~ 154 (784)
++.+.+++..| ....++...+..+.++.+.++.+..
T Consensus 221 f~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 221 FTRETLRELRR-LLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887665 4444555555555666666666655
No 104
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=90.41 E-value=0.3 Score=41.53 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHH-HHHHHhhccCCCceE
Q 043446 552 SMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFR-MVNQNLLANAPCSVG 606 (784)
Q Consensus 552 ~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~-~~~~~vl~~apc~V~ 606 (784)
.+.+.+.+.|++.++|.|++|.|.....+... .| +...++.++++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCcee
Confidence 68899999999999999999999764333322 34 677899999999975
No 105
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=90.41 E-value=3.8 Score=40.18 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHH-------HHHH
Q 043446 40 ILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLL-------YFLF 112 (784)
Q Consensus 40 l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~-------~llF 112 (784)
+..++++..+++++..-+.|=|++.----|+.|+++...+ |.... -.+....+..++-+|++ |-.-
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIv 90 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIV 90 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHH
Confidence 4445556666666666666667888888888999887542 22210 11233445556666554 3445
Q ss_pred HHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043446 113 LVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHK 154 (784)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~ 154 (784)
..++|.|.+++||.+..-..--+.+.++||+++..+++.++.
T Consensus 91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY 132 (254)
T TIGR00808 91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGY 132 (254)
T ss_pred HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 678899999999999988888888999999999999998765
No 106
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=90.29 E-value=20 Score=36.21 Aligned_cols=109 Identities=13% Similarity=0.190 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchh
Q 043446 309 TLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKG 388 (784)
Q Consensus 309 ~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG 388 (784)
-+..-+.+-+-.+-.|+| =+++.+. ..|.-+..-++++.+.-++..++.+++++.+.. +-.++.||.
T Consensus 63 ~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkS 129 (230)
T COG1346 63 WINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKS 129 (230)
T ss_pred HHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcccc
Confidence 344445555545666665 1233444 467667777777777888889999999998743 334468999
Q ss_pred HHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 043446 389 LVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSI 430 (784)
Q Consensus 389 ~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l 430 (784)
...-+...+..+.|-+.+-....++++-++-..+.+++++.+
T Consensus 130 vTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 130 VTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888889999998887666666666666555555566554
No 107
>PRK04972 putative transporter; Provisional
Probab=88.64 E-value=5 Score=46.93 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhHcc-----cCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc
Q 043446 43 LTLVVVTTRLLVLVLKP-----FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE 117 (784)
Q Consensus 43 l~lil~~~~l~~~l~~r-----l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle 117 (784)
+++-++++.+++.+-=+ +++-.--|.+++|+++|- ++...+... -.| ......+.++|+.+|+..+|+.
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~-~~p---~~a~~~l~~~GL~lFla~vGl~ 459 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFG-YIP---QGALNMVKEFGLMVFMAGVGLS 459 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCce-eeC---HHHHHHHHHHhHHHHHHHHHHh
Confidence 44444555555555333 344456689999999995 233211111 123 2366789999999999999998
Q ss_pred cChhHH---HhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH-HhhccHHHHHHHHHhcC
Q 043446 118 MDISAI---RRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVA-LSVTAFPVLARILAELK 188 (784)
Q Consensus 118 ~d~~~l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~-ls~Ts~~vv~~il~el~ 188 (784)
--.+.+ ++.+.+.+.++....++|.++++.+++++.+++ ....+|++ -+.|++|......+..+
T Consensus 460 aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~-------~~~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 460 AGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMN-------RALLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHhCCCCCcHHHHHHHhhcC
Confidence 776544 455667777777777788877887776654432 23455544 46788887777654433
No 108
>COG2985 Predicted permease [General function prediction only]
Probab=87.33 E-value=2.5 Score=47.06 Aligned_cols=101 Identities=27% Similarity=0.391 Sum_probs=57.0
Q ss_pred hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHH---HhchhhHHHHHHHHHHHH
Q 043446 65 VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAI---RRTGKKALAIAVGGMTLP 141 (784)
Q Consensus 65 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~~~~ 141 (784)
..+-++.|.+++...+.+.+ +.+.+ ++|+++|.+.+|+|--+..+ |+.+++-..+++.-
T Consensus 37 l~g~L~Vgl~l~~~~~~i~~------------~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli---- 98 (544)
T COG2985 37 LFGVLFVGLFLGQYGFTINT------------DMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI---- 98 (544)
T ss_pred hhhHhHHHHHhccccccccc------------chhhh--hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----
Confidence 44555666666654433322 12222 89999999999999987654 56666655555443
Q ss_pred HHHHHHHHHHHhh-hcCCCchhHHHHHHHHH-HhhccHHHHH---HHHHhcC
Q 043446 142 FVIGGCFSFILHK-KNQGMNQGTFVLFLGVA-LSVTAFPVLA---RILAELK 188 (784)
Q Consensus 142 ~~~~~~~~~~l~~-~~~~~~~~~~al~lg~~-ls~Ts~~vv~---~il~el~ 188 (784)
++.+..+++.++. ++++. .+..|.. -+.||+|... .+++|++
T Consensus 99 vi~~~~~a~~l~k~~~~~~-----~~~~Gm~sGAlTsTP~L~aa~~~L~~lg 145 (544)
T COG2985 99 VIAALLLAWVLHKLFGIDL-----GLIAGMFSGALTSTPGLGAAQDILRELG 145 (544)
T ss_pred HHHHHHHHHHHHhhcCCCH-----HHhhhhhcccccCCchhHHHHHHHHhhc
Confidence 3444555555555 44432 2223222 2445555544 4567766
No 109
>PRK03818 putative transporter; Validated
Probab=87.26 E-value=18 Score=42.39 Aligned_cols=106 Identities=22% Similarity=0.295 Sum_probs=69.5
Q ss_pred hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHh----chhhHHHHHHHHHHH
Q 043446 65 VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRR----TGKKALAIAVGGMTL 140 (784)
Q Consensus 65 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~~~ 140 (784)
.-|-+++|+++|-. +...+.. +..|+ .....+.++|+.+|+..+|++--.+.+.. .+.+...++..-.++
T Consensus 403 ~~G~L~~gl~~g~~--~~~~~~~-~~~p~---~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGRI--GSIGKLY-WFMPP---SANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHhc--cCCCCce-eecCH---HHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 56789999999953 2221111 11232 35678889999999999999888766543 355666677777777
Q ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHHH-HHhhccHHHHHHH
Q 043446 141 PFVIGGCFSFILHKKNQGMNQGTFVLFLGV-ALSVTAFPVLARI 183 (784)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~~al~lg~-~ls~Ts~~vv~~i 183 (784)
|.++++.+++++.++ + ....+|+ +-+.|++|.....
T Consensus 477 ~~~~~~~~~~~~~~~--~-----~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKM--N-----YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcC--C-----HHHHHHHHhccCCCcHHHHHH
Confidence 777777776554332 2 2345554 4577888877665
No 110
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=87.23 E-value=35 Score=34.87 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHH
Q 043446 313 KLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEM 392 (784)
Q Consensus 313 ~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l 392 (784)
-+.+-.-.+-.|+| =+.+.+. ..|..+++-++++.+.-+++++..+++++.+.. +-..+.||....-
T Consensus 70 lLgPAtVALAvPLY-------~q~~~lk--~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtP 136 (232)
T PRK04288 70 FLEPATIAFAIPLY-------KKRDVLK--KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTA 136 (232)
T ss_pred HHHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHH
Confidence 34444445556655 1233444 356556666666777778888889999998743 4445789998888
Q ss_pred HHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHh
Q 043446 393 IVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTS 429 (784)
Q Consensus 393 ~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~ 429 (784)
+...+..+.|-+.+-....++++-++-..+.++++++
T Consensus 137 IAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~ 173 (232)
T PRK04288 137 IALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKL 173 (232)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888776555555555555544445555554
No 111
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=86.94 E-value=33 Score=34.76 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhHcccCC----ChhHHHHHHHHhhcccccCCc-ccccccccCcccHHHHHHHHHHHHHHHHHHHhhc
Q 043446 43 LTLVVVTTRLLVLVLKPFRQ----PRVISEIIGGVLLGPSVLGRN-TAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE 117 (784)
Q Consensus 43 l~lil~~~~l~~~l~~rl~~----P~iv~~ilaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle 117 (784)
+.+.++.-.+..++.||.|- |-+++.++...++-. +|.- +++. .+.++++.+ +|-....|..-+-
T Consensus 11 l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i~Y~~Y~------~g~~~i~~l--LgPAtVAlAvPLY 80 (230)
T COG1346 11 LLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGISYEDYM------KGGQWINFL--LGPATVALAVPLY 80 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCCCHHHHh------cccHHHHHH--HHHHHHHHhhHHH
Confidence 33444444455666777774 444444444333321 1211 1111 234455555 3334455666777
Q ss_pred cChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHhcC
Q 043446 118 MDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVAL-SVTAFPVLARILAELK 188 (784)
Q Consensus 118 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~l-s~Ts~~vv~~il~el~ 188 (784)
-+++.+||+|++...-...+..+.+..+..++.+++. +. .+.....- |.| .|+...+-+++|
T Consensus 81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~---~~-----~~~~Sl~PkSvT-TpiAm~vs~~iG 143 (230)
T COG1346 81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGL---SP-----ELILSLLPKSVT-TPIAMEVSESIG 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CH-----HHHHHhcccccc-cHHHHHHHHhcC
Confidence 8899999999998887777877777777777766543 21 22222222 333 366777666666
No 112
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=86.91 E-value=3.8 Score=40.52 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=32.9
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
||+|.+.||.|+--++.++.+.+++.+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999999888788899988853
No 113
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=86.85 E-value=6.6 Score=41.77 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=54.4
Q ss_pred hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHH
Q 043446 65 VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVI 144 (784)
Q Consensus 65 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~ 144 (784)
.+--++.|+++|+.. +++.+ .++.=..+++.+..|..|.++|++.+.+.+.+...+++..+.+++..
T Consensus 169 lilpILiGmilGNld----~~~~~---------~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLD----PDMRK---------FLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccc----hhhHH---------HHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 556677888888621 11111 12212223788899999999999999999999999999888888888
Q ss_pred HHHHHHHH
Q 043446 145 GGCFSFIL 152 (784)
Q Consensus 145 ~~~~~~~l 152 (784)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 77777655
No 114
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=86.74 E-value=1.4 Score=43.43 Aligned_cols=93 Identities=14% Similarity=0.208 Sum_probs=55.1
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccC
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIAN 706 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (784)
+|+|.+.||+|+-..+.+..++.+..+.+++++|+...-. .+...+.+++.++.+++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~---------------------~~s~~~~~~v~~~~~~~~- 58 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR---------------------EESDEEAEFVEEICEQLG- 58 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS---------------------CCHHHHHHHHHHHHHHTT-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC---------------------cccchhHHHHHHHHHhcC-
Confidence 5899999999999999999999999999999999975322 112335577777777652
Q ss_pred CCceEEEEEecCC------hH-HHHHHHH-----hc--cCCccEEEEcccCC
Q 043446 707 DESVVYTEKLANN------GE-ETLAAIR-----SM--DHSHDLFIVGRGQG 744 (784)
Q Consensus 707 ~~~v~~~e~~v~~------g~-~~~~~i~-----~~--~~~~DLiivG~~~~ 744 (784)
+.+.-...+. +. +.....| +. +.++|.++.|+|.+
T Consensus 59 ---i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 59 ---IPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp ----EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred ---CceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 3333222221 22 2222222 22 45689999999954
No 115
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=85.21 E-value=3.5 Score=42.95 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=64.6
Q ss_pred EeccCCcchHHHHHHHHHHhcCCC-eEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccCCC
Q 043446 630 VLFFGGPDDREALAYAWRMSEHPG-NNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIANDE 708 (784)
Q Consensus 630 v~~~gg~~~~~al~~a~~la~~~~-~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (784)
+++.=+|.|+.|++.|.|+.++.+ .++|++.+=+++. .+++.+.+..+. ..+.
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a-------------------------~~~~~lr~aLAm-GaD~ 83 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL-------------------------TNAKGRKDVLSR-GPDE 83 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch-------------------------hhHHHHHHHHHc-CCCE
Confidence 455558999999999999999864 8999999864321 122344444332 1221
Q ss_pred ceEEEEE--ecCChHHHHHHHHhc--cCCccEEEEcccCCCC-Cccc-cCcCccCCCCccccchhh
Q 043446 709 SVVYTEK--LANNGEETLAAIRSM--DHSHDLFIVGRGQGVT-SPLT-DGLTDWSECPELGAIGDL 768 (784)
Q Consensus 709 ~v~~~e~--~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~~-~~~~-~gl~~w~e~~elG~igd~ 768 (784)
.+-.... ...|...|..++.+. ..+||||+-|++..+. +.++ ..+.+|-..|-+..+-++
T Consensus 84 avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 84 LIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred EEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 1211111 123444455544433 2359999999997543 2222 234455555666555554
No 116
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=84.50 E-value=8.1 Score=42.92 Aligned_cols=106 Identities=13% Similarity=0.218 Sum_probs=59.9
Q ss_pred hHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHH-HHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 291 VFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFF-AISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSL 368 (784)
Q Consensus 291 ~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF-~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~ 368 (784)
++...++|.+..+ .-+.++-.+.+..++..+++|.+. ..++-..+...+. .++.+.+..++..+.-++..++..+
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666665 556677778888899899999874 4445444444443 2333333333333344555566677
Q ss_pred HhCCCchhHH--HHHHHhcchhHHHHHHHHhhc
Q 043446 369 MYQMPIREGV--TLGLLMNTKGLVEMIVLNVGK 399 (784)
Q Consensus 369 ~~~~~~~~~~--~lg~~m~~rG~~~l~~~~~~~ 399 (784)
+++.+.++.. .++...+--|.+.+.+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQALF 118 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHHHh
Confidence 6776655533 233334555666665555443
No 117
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=84.24 E-value=27 Score=37.73 Aligned_cols=134 Identities=13% Similarity=0.176 Sum_probs=76.7
Q ss_pred cCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHH
Q 043446 60 FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMT 139 (784)
Q Consensus 60 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ 139 (784)
++.|.+++.+ +|+++...... .|..-.+.++.+++...-+-||..|+.++.+.+++.++........-.+
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 5677777554 45666643221 2444567899999999999999999999998888777777666566554
Q ss_pred H-HHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHH
Q 043446 140 L-PFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLA 214 (784)
Q Consensus 140 ~-~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~ 214 (784)
+ |.+. +.+...+ +.+. ...-...+++..-+++...++.+.--.+. +.+.+...++-+++++.+.
T Consensus 250 l~P~i~-~~~~~~~---~l~~----~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 250 VQPAVM-AGISKLI---GLRG----LELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHH-HHHHHHh---CCCh----HHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 3 4433 3333333 2221 22334444444445555555544321343 3333334444444444433
No 118
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=84.12 E-value=43 Score=34.29 Aligned_cols=83 Identities=7% Similarity=0.007 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhc
Q 043446 96 VMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVT 175 (784)
Q Consensus 96 ~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~T 175 (784)
.+++..+ +|-.-..|..-+--+++.+||+++..+.-...+.++.++.+..++.+++. + ..+..+.+-=..
T Consensus 64 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl---~-----~~~~~Sl~pKSV 133 (232)
T PRK04288 64 GDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQL---D-----NAVMASMLPQAA 133 (232)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc---C-----HHHHHHHhhHhh
Confidence 4444444 33333444555557789999999988877777777777777766666532 2 123333332222
Q ss_pred cHHHHHHHHHhcC
Q 043446 176 AFPVLARILAELK 188 (784)
Q Consensus 176 s~~vv~~il~el~ 188 (784)
..|+...+-++.|
T Consensus 134 TtPIAm~is~~iG 146 (232)
T PRK04288 134 TTAIALPVSAGIG 146 (232)
T ss_pred hHHHHHHHHHHhC
Confidence 3466666655555
No 119
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=84.01 E-value=5.2 Score=43.63 Aligned_cols=116 Identities=14% Similarity=0.041 Sum_probs=64.6
Q ss_pred HhhhhHHHHHHhhccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchh-HHHHHHHH
Q 043446 319 SGLLLPLFFAISGLKTDISSIHGTS-TWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKG-LVEMIVLN 396 (784)
Q Consensus 319 ~~~~~plfF~~~G~~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG-~~~l~~~~ 396 (784)
.+.|+-+||..+|+.-++..+.... ................-......+++.+++..-++..|-.--.-| ..+.+...
T Consensus 68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~ 147 (404)
T COG0786 68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGP 147 (404)
T ss_pred ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHH
Confidence 4788889999999999998886531 111112222222334444455567777876665555533222222 23455666
Q ss_pred hhccCCcCChhhHHHH--HHHHHHHHHhHHHHHHhhcccc
Q 043446 397 VGKDQKVLDDESFAIM--VIVAVVMTGIITPIVTSIYKPA 434 (784)
Q Consensus 397 ~~~~~~~i~~~~~~~l--v~~~vv~t~i~~pl~~~l~~~~ 434 (784)
...+.|.-+.....+- .+-.+.-.++.+|+.+|+.++.
T Consensus 148 ~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 148 TFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 6677765554332222 2222333445679999988654
No 120
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=82.94 E-value=5.3 Score=41.82 Aligned_cols=131 Identities=14% Similarity=0.202 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC--Ccc--hhHHHHHHHHHHHhhhhHHHHHHhhccccccccccch
Q 043446 268 YVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN--GPL--GLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTS 343 (784)
Q Consensus 268 ~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~--~~~--~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~ 343 (784)
..+..+.++|+.+.+++.+.+++..|-.+||..... +.+ ...+...+..+. .-+....+|+++.+.++....
T Consensus 10 tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk 85 (408)
T COG4651 10 TIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVK 85 (408)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHH
Confidence 345667788899999999999999999999999985 222 234455555554 223456889999988876544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCCh
Q 043446 344 TWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDD 406 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~ 406 (784)
.|.+-..+. -..+. ..-.+...+..++++...+..|+.++.-.++ ++.-...+.+.++.
T Consensus 86 ~iAipgAl~-qia~a-t~lg~gL~~~lgws~~~glvfGlaLS~aSTV--vllraLqEr~lidt 144 (408)
T COG4651 86 AIAIPGALA-QIALA-TLLGMGLSSLLGWSFGTGIVFGLALSVASTV--VLLRALEERQLIDT 144 (408)
T ss_pred HHhcchHHH-HHHHH-HHHHhHHHHHcCCCcccceeeeehhhhHHHH--HHHHHHHHhccccc
Confidence 443211111 01111 1112334566788888888888877665544 33333334444443
No 121
>COG3329 Predicted permease [General function prediction only]
Probab=82.42 E-value=18 Score=37.90 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=72.1
Q ss_pred hhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhcc----ccccccccchhHHHHHHHHHHHHHHHHHHH
Q 043446 288 THSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLK----TDISSIHGTSTWMITLLVIILACAGKIAGT 363 (784)
Q Consensus 288 ~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~----~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~ 363 (784)
+++.+.-|+.|++++--+-.-++-+.+-...+. .....+|.+ +.-+.+.. ....+..-+.+.++.-++..
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lsl----yLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALSL----YLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHHH----HHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHH
Confidence 468888888888887511111111222111111 123445544 33333332 23334455556666677788
Q ss_pred HHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHH
Q 043446 364 LLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIM 412 (784)
Q Consensus 364 ~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~l 412 (784)
++..++.+++..|+...+...+.-..+.++.+...++..-+..+.|...
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 8888888999999999999888888888888877776655555655544
No 122
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=81.73 E-value=7.3 Score=39.39 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=58.5
Q ss_pred EEEEEEEecCCC-ChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCcc
Q 043446 540 TVQPLTAISPYS-SMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTR 618 (784)
Q Consensus 540 ~v~~~~~vs~~~-~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~ 618 (784)
...+++.++|.+ ...++|.+.+.+-+.|.|.+|-. .+-+......+.+++-++...||.++......
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS--------~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~---- 82 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGS--------DGVTEENVDNVVEAIKERTDLPVILFPGSPSG---- 82 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECCc--------ccccHHHHHHHHHHHHhhcCCCEEEecCChhc----
Confidence 346889999999 89999999999999999999843 22233447888889888999999887433211
Q ss_pred ccccCcceeEEEecc
Q 043446 619 LAANQVTHNIAVLFF 633 (784)
Q Consensus 619 ~~~~~~~~~I~v~~~ 633 (784)
-....+.+++|..
T Consensus 83 --is~~aDavff~sv 95 (240)
T COG1646 83 --ISPYADAVFFPSV 95 (240)
T ss_pred --cCccCCeEEEEEE
Confidence 1123466777654
No 123
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=81.52 E-value=5.5 Score=38.40 Aligned_cols=83 Identities=24% Similarity=0.274 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccCCCceEEEE
Q 043446 635 GPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIANDESVVYTE 714 (784)
Q Consensus 635 g~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~e 714 (784)
.+.|+|+++.|+++++..+.+++++-+-+..+ .++.+.+...++.. .++...+
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~--------------------------~~~~l~~~l~~~G~-d~v~~~~ 66 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGPAEE--------------------------AAEALRKALAKYGA-DKVYHID 66 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC--------------------------HHHHHHHHHHSTTE-SEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEecchh--------------------------hHHHHhhhhhhcCC-cEEEEec
Confidence 48899999999999999999999987751111 23333433332222 2333222
Q ss_pred Ee-cC--ChHHHHHHHHhc--cCCccEEEEcccCC
Q 043446 715 KL-AN--NGEETLAAIRSM--DHSHDLFIVGRGQG 744 (784)
Q Consensus 715 ~~-v~--~g~~~~~~i~~~--~~~~DLiivG~~~~ 744 (784)
-- .. +...+...+.+. +.++|+|++|+...
T Consensus 67 ~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 67 DPALAEYDPEAYADALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp -GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHH
T ss_pred CccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 11 11 344466666655 35699999998754
No 124
>PRK12342 hypothetical protein; Provisional
Probab=80.89 E-value=3.2 Score=43.18 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=28.2
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 043446 630 VLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAA 664 (784)
Q Consensus 630 v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~ 664 (784)
+++.=+|.|+.|++.|.|+. ..+.++|++.+=++
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~ 62 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLA-TDGDEIAALTVGGS 62 (254)
T ss_pred CCccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCC
Confidence 45556899999999999999 56899999998643
No 125
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=80.82 E-value=11 Score=42.78 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC---CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHH
Q 043446 270 CLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN---GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWM 346 (784)
Q Consensus 270 ~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~---~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~ 346 (784)
.+++.+...++.+++.+..+...-..+.|++..- .....+..-.-+.+. .+++|+-...-|+++|...+.+ .|.
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~l~~--~~~ 88 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFL-VLFLAILLFAGGLELDLRELRR--VWR 88 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHH-HHHHHHHHHHhHhcCCHHHHHH--hHH
Confidence 3444444555555555555555555555544441 111111111112222 6777777778999999998874 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHhcchhHHHHH
Q 043446 347 ITLLVIILACAGKIAGTLLVSLMY--QMPIREGVTLGLLMNTKGLVEMI 393 (784)
Q Consensus 347 ~~~~~~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~m~~rG~~~l~ 393 (784)
.+..+.....+...++.....++. ++|+..++.+|..++|-.-+.+.
T Consensus 89 ~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 89 SILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 555555555555555555555555 78888999999988887755543
No 126
>PRK10711 hypothetical protein; Provisional
Probab=80.57 E-value=67 Score=32.89 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhH
Q 043446 344 TWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGII 423 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~ 423 (784)
.|.-+.+-++++.+.-++.+++.++.++.+.. +-..|.||....-+...+..+.|-+.+-....++++-++-..+.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 55555555666677778888889999988643 34456899988888888888887765444444444444444444
Q ss_pred HHHHHh
Q 043446 424 TPIVTS 429 (784)
Q Consensus 424 ~pl~~~ 429 (784)
++++++
T Consensus 163 ~~llk~ 168 (231)
T PRK10711 163 HTLLNA 168 (231)
T ss_pred HHHHHH
Confidence 455554
No 127
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.87 E-value=0.61 Score=51.81 Aligned_cols=112 Identities=19% Similarity=0.332 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcch--hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHH
Q 043446 274 TGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLG--LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLV 351 (784)
Q Consensus 274 ~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~--~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~ 351 (784)
+.++....+.+.++++..+|-.++|++++..... +...+..+.+. .+.+++.....|.++|.+.+.. .+......
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~-~i~l~~llF~~G~~~d~~~l~~--~~~~~~~~ 82 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLA-EIGLAFLLFEAGLELDIKELRR--NWRRALAL 82 (380)
T ss_dssp ------------------------------------------S-SSH-HHHS--SSHHHHTTGGGG--------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHH-HHHHHHHHHHHHHhhccccccc--cccccccc
Confidence 3344445578889999999999999999983332 11134455554 7777777789999999998874 34444444
Q ss_pred HHHHHHHHHHH-HHHHHH---HhCCCchhHHHHHHHhcchh
Q 043446 352 IILACAGKIAG-TLLVSL---MYQMPIREGVTLGLLMNTKG 388 (784)
Q Consensus 352 ~~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lg~~m~~rG 388 (784)
.+..++.-++. ++.... ..++++.+++.+|..+.+-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -------------------------------TTHHHHTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 44444444444 444443 47889999999998877654
No 128
>TIGR00930 2a30 K-Cl cotransporter.
Probab=79.15 E-value=1.8e+02 Score=36.52 Aligned_cols=134 Identities=8% Similarity=0.090 Sum_probs=78.3
Q ss_pred CCCCCCceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHH
Q 043446 448 SKPDSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIIN 527 (784)
Q Consensus 448 ~~~~~e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 527 (784)
+..+-+.++|+.+.+++.-+.+++++..+.+ +.+ -..+.|+++.+.+.. .++.++..+
T Consensus 570 h~knwrPqiLvl~~~p~~~~~Ll~f~~~l~~--~~g-l~i~~~v~~~~~~~~-------------------~~~~~~~~~ 627 (953)
T TIGR00930 570 HVKNWRPQCLVLTGPPVCRPALLDFASQFTK--GKG-LMICGSVIQGPRLEC-------------------VKEAQAAEA 627 (953)
T ss_pred CccccCCeEEEEeCCCcCcHHHHHHHHHhcc--CCc-EEEEEEEecCchhhh-------------------HHHHHHHHH
Confidence 3345567999999999999999999999983 334 356668886432211 011122222
Q ss_pred HHHHhhHccCceEEEEEEEecCCCChHHHHHHHHHh-----cCccEEEEccccccccCCcccccChhHHHHHHHhhccCC
Q 043446 528 AFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAED-----KRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP 602 (784)
Q Consensus 528 a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~-----~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap 602 (784)
..+.+-++ .+++.=.....+ .++.+++-.+.+. .+++.++|||...|..+.. +.-+. +-++.+.. .++.
T Consensus 628 ~~~~~~~~-~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~-~~~~~-y~~~i~~a-~~~~ 701 (953)
T TIGR00930 628 KIQTWLEK-NKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEP-RAWET-YIGIIHDA-FDAH 701 (953)
T ss_pred HHHHHHHH-hCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccc-hhHHH-HHHHHHHH-HHcC
Confidence 22222222 233322223334 5888999888876 5789999999988764431 11122 33334342 3555
Q ss_pred CceEEEe
Q 043446 603 CSVGILV 609 (784)
Q Consensus 603 c~V~ilv 609 (784)
..|.|+.
T Consensus 702 ~~v~i~r 708 (953)
T TIGR00930 702 LAVVVVR 708 (953)
T ss_pred CcEEEEc
Confidence 6677663
No 129
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=78.32 E-value=11 Score=36.96 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=32.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
+|+|.+.||.|+--++.++.+..++.+.+++++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5899999999999999999998877678899998854
No 130
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=77.94 E-value=8.1 Score=41.13 Aligned_cols=113 Identities=22% Similarity=0.312 Sum_probs=71.9
Q ss_pred HHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHH
Q 043446 316 DFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVL 395 (784)
Q Consensus 316 ~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~ 395 (784)
.+.++++=|+.|.-+|..+|+..+.. ..+. .++-..+-++ ...+++.+...|++.+|+..+|.+=+.-|-.++.+.
T Consensus 65 gi~~~l~P~LIF~GIGAmtDFgplla-nP~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s 140 (360)
T PF03977_consen 65 GISNGLFPPLIFMGIGAMTDFGPLLA-NPKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVS 140 (360)
T ss_pred hhhcchhhHHHHHHHhHHHhhHHHHh-CHHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHH
Confidence 34468888999999999999987764 2222 2222233333 334566777789999999999998888888888777
Q ss_pred Hhhcc--CCcCChhhHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 043446 396 NVGKD--QKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARR 436 (784)
Q Consensus 396 ~~~~~--~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~ 436 (784)
+.... .+.+.-..|+-+ + +.-.+-||+.|.+-.+++|
T Consensus 141 ~~LAp~LlgpIaVaAYsYM---a-LvPiiqPpimklLttkkeR 179 (360)
T PF03977_consen 141 SKLAPHLLGPIAVAAYSYM---A-LVPIIQPPIMKLLTTKKER 179 (360)
T ss_pred HhhhHHHHHHHHHHHHHHH---H-HHhhhhhHHHHHhcCHHHH
Confidence 64321 122332333333 2 2345678888876654443
No 131
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=77.89 E-value=20 Score=38.96 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=64.3
Q ss_pred HHHhHccc-CCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhch-hh
Q 043446 53 LVLVLKPF-RQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE-MDISAIRRTG-KK 129 (784)
Q Consensus 53 ~~~l~~rl-~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle-~d~~~l~~~~-~~ 129 (784)
++.+++.+ ++|..+-.++.|+++-- +|.+|+-.+ ....+.-+++..--...+++-.|+. +|++++.+.. .+
T Consensus 194 ~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~ 267 (347)
T TIGR00783 194 AGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ 267 (347)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh
Confidence 34444444 68999999999999884 455542110 0111222234333344456667886 8999999877 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 043446 130 ALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALS 173 (784)
Q Consensus 130 ~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls 173 (784)
.+.+.+.+++--.+.++.++++++.++. ..++.-|.|++
T Consensus 268 ~vviiv~~Vlg~ii~s~lvGKllG~YPi-----E~aItagLC~~ 306 (347)
T TIGR00783 268 FVVICLSVVVAMILGGAFLGKLMGMYPV-----ESAITAGLCNS 306 (347)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCChH-----HHHHHHhhhcc
Confidence 5555555555556666677777655332 33444455654
No 132
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=77.67 E-value=7.8 Score=41.76 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=72.3
Q ss_pred HHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHH
Q 043446 316 DFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVL 395 (784)
Q Consensus 316 ~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~ 395 (784)
.+.++++=|+.|.-+|..+|+..+.. ..+. .++.-..+-++-+ .+++.+...|++.+|+..+|.+=+.-|-.++.+.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgplla-nP~~-~ll~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILA-RPWA-SITVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHh-ChHH-HHHHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 45668888999999999999987764 1221 1111223333333 3455667789999999999998888888888777
Q ss_pred Hhhcc--CCcCChhhHHHHHHHHHHHHHhHHHHHHhhccccccc
Q 043446 396 NVGKD--QKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRF 437 (784)
Q Consensus 396 ~~~~~--~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~~ 437 (784)
+.... .+.+.-..|+-+ + +.-.+-||+.|.+-.+++|.
T Consensus 178 ~kLAp~Llg~IaVAAYsYM---a-LVPiiqPpimklLttkkER~ 217 (399)
T TIGR03136 178 LILAKDLFVPISIIAYLYL---S-LTYAGYPYLIKLLVPKKYRG 217 (399)
T ss_pred HhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhhcCHHHHc
Confidence 64321 122333333333 2 23456788888776554443
No 133
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=77.20 E-value=5.8 Score=39.43 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHH
Q 043446 347 ITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLN 396 (784)
Q Consensus 347 ~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~ 396 (784)
..+.+-+..+++-.+++++..++.+++++|++.++..++--..-+..+..
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 35667777888999999999999999999999999887776666655554
No 134
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=76.75 E-value=19 Score=35.10 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=31.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHP--GNNLTVMRFIA 663 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~--~~~ltv~~~~~ 663 (784)
||+|.+.||.|+--++.++.+..++. +.+++.+++..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999998887665 77888888864
No 135
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=76.31 E-value=79 Score=31.37 Aligned_cols=128 Identities=13% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHH--HhchhhhHHHHHHHhhcCCCcchhHHHHHHHH---
Q 043446 242 FCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITD--AIGTHSVFGAFVFGLVIPNGPLGLTLIEKLED--- 316 (784)
Q Consensus 242 ~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~--~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~--- 316 (784)
+..++.++..-.+..|.++.. ..+...+...+......+ ..-...+++++++=++.....+++.....+..
T Consensus 41 i~al~~g~vyml~~~KV~K~G----~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gliaeli~~~g~Yks~~~~~ia~~~~ 116 (189)
T TIGR02185 41 ITAFLVGIIFFLMVAKVPKRG----VIFIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIASTGGYKNKRKVTIAYVLF 116 (189)
T ss_pred HHHHHHhHHHhhhhhhcCCcc----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 334455555556667765532 222332222222222211 12334555666666666544444333222211
Q ss_pred --H-HHhhhhHHHHHHhhccc-------c---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 043446 317 --F-VSGLLLPLFFAISGLKT-------D---ISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMP 373 (784)
Q Consensus 317 --~-~~~~~~plfF~~~G~~~-------d---~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~ 373 (784)
+ ..+-++|+||..-...- + .+.+......+...+.++..+++-++|+++..+.+|..
T Consensus 117 ~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~t~v~~~iG~~iG~kllkKH 186 (189)
T TIGR02185 117 FLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAVIMIVLTAVAGIAGVLIGKKLLKKH 186 (189)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11334677763222111 1 11111111223355556667777789999888887654
No 136
>COG2985 Predicted permease [General function prediction only]
Probab=74.98 E-value=13 Score=41.57 Aligned_cols=109 Identities=22% Similarity=0.240 Sum_probs=70.1
Q ss_pred CChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHH---HhchhhHHHHHHHHH
Q 043446 62 QPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAI---RRTGKKALAIAVGGM 138 (784)
Q Consensus 62 ~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~ 138 (784)
+-..-|.+++|++||- +|.+.+.. |..|+ .....+.++|+.+||=..|++---+.. -..+-.....+..-.
T Consensus 395 LG~aGGpLivaLiLG~--ig~iGpl~-w~mP~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit 468 (544)
T COG2985 395 LGNAGGPLIVALILGF--IGAIGPLT-WFMPP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVT 468 (544)
T ss_pred ecccccHHHHHHHHHH--hcccCceE-EEcCh---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHH
Confidence 3345688999999984 45443221 12243 367788999999888777776544332 244555566667777
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH-hhccHHHHHHH
Q 043446 139 TLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVAL-SVTAFPVLARI 183 (784)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~l-s~Ts~~vv~~i 183 (784)
++|.+.+++++.++.++.+ ....|++. +.|++|...-.
T Consensus 469 ~vp~i~~~llg~~v~kmn~-------~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 469 LVPVIIVFLLGRYVLKMNW-------LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHHhccH-------HHHhhHHhcCCCChHHHHHH
Confidence 7888888888888766432 44455544 77888866554
No 137
>COG2431 Predicted membrane protein [Function unknown]
Probab=74.81 E-value=35 Score=35.48 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=46.6
Q ss_pred hhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccC---hhHHHh-chhhHHHHHHHHHH
Q 043446 64 RVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMD---ISAIRR-TGKKALAIAVGGMT 139 (784)
Q Consensus 64 ~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d---~~~l~~-~~~~~~~ia~~~~~ 139 (784)
.+.+..+.|+++|-..-... +..+..++..+.+++|.+|.++. ....+. .-|+.+.+++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 56778888888885422211 12355778899999999999988 332221 22566666666555
Q ss_pred HHHHHHHHHHHHH
Q 043446 140 LPFVIGGCFSFIL 152 (784)
Q Consensus 140 ~~~~~~~~~~~~l 152 (784)
-..+.|.+.++++
T Consensus 175 ssliGG~iaa~~l 187 (297)
T COG2431 175 SSLIGGLIAAFLL 187 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 138
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=74.46 E-value=1.1e+02 Score=31.35 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhH
Q 043446 344 TWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGII 423 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~ 423 (784)
.|.-+....+++.+.-+...++.++.++.+.. . ...+.||....-+...+..+.|-..+-....++++-++-..+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i--~~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--I--IASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 45445555556666677888888999998732 2 3357899988888888888887765444444444444444444
Q ss_pred HHHHHhh
Q 043446 424 TPIVTSI 430 (784)
Q Consensus 424 ~pl~~~l 430 (784)
+++++++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 4555543
No 139
>PRK06801 hypothetical protein; Provisional
Probab=71.82 E-value=21 Score=37.86 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=73.7
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++..|-.+...+ ..+...|++.|++.++..|+.-..+.....+ -..+........++++.||.+=-|++....
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e 88 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYIS-----LESLVEAVKFEAARHDIPVVLNLDHGLHFE 88 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 455555666555 4788999999999999999998876543322 134888888999999999999889985310
Q ss_pred c-cccccCcceeEEEeccCCcch-HHHHHHHHH---HhcCCCeEE
Q 043446 617 T-RLAANQVTHNIAVLFFGGPDD-REALAYAWR---MSEHPGNNL 656 (784)
Q Consensus 617 ~-~~~~~~~~~~I~v~~~gg~~~-~~al~~a~~---la~~~~~~l 656 (784)
. ...-...+..|. +||+..+ +|-++..++ +|+..++.+
T Consensus 89 ~i~~Ai~~GftSVm--~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 89 AVVRALRLGFSSVM--FDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHhCCcEEE--EcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0 000011233443 4887555 777766544 477777644
No 140
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=71.29 E-value=24 Score=40.06 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=32.7
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEeee
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMS-EHPGNNLTVMRFIA 663 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la-~~~~~~ltv~~~~~ 663 (784)
.++|+|.+.||+|+-..+.+..++. ...+.+++++|+..
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnh 54 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHH 54 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeC
Confidence 4689999999999998888887776 44578999999964
No 141
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=70.82 E-value=26 Score=37.27 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=33.2
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
++|+|.+.||+|+--+|.+..++.++ .++.++||..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~ 57 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDH 57 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecC
Confidence 68999999999999999999999888 9999999964
No 142
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=70.61 E-value=32 Score=36.91 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHH
Q 043446 65 VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVI 144 (784)
Q Consensus 65 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~ 144 (784)
.+|-++.|.+-||.....+..++..+|. =-+.++|...|++- .++++..++..+.+...+++.|.+-
T Consensus 183 LlGgliIG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~ 249 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLIN 249 (327)
T ss_pred HHHHHHHhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555555666554444333333332 22556777888854 2344444555556666777777654
Q ss_pred H
Q 043446 145 G 145 (784)
Q Consensus 145 ~ 145 (784)
+
T Consensus 250 a 250 (327)
T PF05982_consen 250 A 250 (327)
T ss_pred H
Confidence 3
No 143
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=69.96 E-value=4.9 Score=33.90 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=28.6
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEe
Q 043446 628 IAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRF 661 (784)
Q Consensus 628 I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~ 661 (784)
|++|+.||+|+..++.+|.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5899999999999999999987 44778888877
No 144
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=68.75 E-value=1.3e+02 Score=29.83 Aligned_cols=127 Identities=13% Similarity=0.236 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHH--HhchhhhHHHHHHHhhcCCCcchhHHHHHHHH---
Q 043446 242 FCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITD--AIGTHSVFGAFVFGLVIPNGPLGLTLIEKLED--- 316 (784)
Q Consensus 242 ~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~--~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~--- 316 (784)
+..++.+++.-.+..|.++.. ..+...+...++.....+ ..-...++++++|=++.....+++.-...+..
T Consensus 39 i~ali~g~vyml~~~KV~K~G----~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf 114 (186)
T PF09605_consen 39 IAALICGIVYMLMVAKVPKRG----AFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVF 114 (186)
T ss_pred HHHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 444566677667778876532 333333333333222222 23345666777777777554444433322211
Q ss_pred --HHHhhhhHHHHHHhhcc---------cc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 043446 317 --FVSGLLLPLFFAISGLK---------TD-ISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQM 372 (784)
Q Consensus 317 --~~~~~~~plfF~~~G~~---------~d-~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~ 372 (784)
...+-+.|++|.-=... -+ .+.+.+..+.+...+.++..+++-++|++++.+..|.
T Consensus 115 ~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllkK 182 (186)
T PF09605_consen 115 SLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLKK 182 (186)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11155667766533332 11 0111111123445666667778888899888887764
No 145
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=68.21 E-value=1.4e+02 Score=30.24 Aligned_cols=82 Identities=12% Similarity=0.254 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhH
Q 043446 344 TWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGII 423 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~ 423 (784)
.|.-++.-++.+.+.-+..+++.++.++.+.. +...+.+|....-+...+..+.|-...-....++++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 55556666666667778888888999998643 33446789988888888888777765444444444444444444
Q ss_pred HHHHHh
Q 043446 424 TPIVTS 429 (784)
Q Consensus 424 ~pl~~~ 429 (784)
++++++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 455554
No 146
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=67.27 E-value=57 Score=35.47 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhHcccCCChh--HHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccCh
Q 043446 43 LTLVVVTTRLLVLVLKPFRQPRV--ISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDI 120 (784)
Q Consensus 43 l~lil~~~~l~~~l~~rl~~P~i--v~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~ 120 (784)
+.+.+..+.+.+.+.+++|+|.. .+-++.|.++--.. + .+ .+.=..+..++..++--.+|.++|.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~-~~-----------~~lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-G-IT-----------IQLPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-c-ee-----------eeCCHHHHHHHHHHHHHHHcccccH
Confidence 66666777788889999999863 33334433333211 1 11 1111334467778888899999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043446 121 SAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHK 154 (784)
Q Consensus 121 ~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~ 154 (784)
..++...|....+.+.. +.-++.+..+++++.+
T Consensus 257 ~~l~~~~r~~~~~~v~i-i~l~~~~~~~a~ll~~ 289 (352)
T COG3180 257 SILREAKRLLPAILVSI-IALMAIAAGMAGLLSW 289 (352)
T ss_pred HHHHHhHhhcchHHHHH-HHHHHHHHHHHHHHHH
Confidence 99988777554443332 2233444555666655
No 147
>PRK08185 hypothetical protein; Provisional
Probab=66.10 E-value=27 Score=37.05 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=71.5
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++-.|-.+...+ ..+...+++.|++.++..|+.-+.+.....| ..+........+++++||.+=-|+|....
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~------~~~~~~~~~~a~~~~vPV~lHLDHg~~~e 82 (283)
T PRK08185 11 HQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG------DNFFAYVRERAKRSPVPFVIHLDHGATIE 82 (283)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc------HHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 444555555554 4788999999999999999998876543322 22778888999999999999889985310
Q ss_pred c-cccccCcceeEEEeccCCc-chHHHHHHHHHHh---cCCCeEE
Q 043446 617 T-RLAANQVTHNIAVLFFGGP-DDREALAYAWRMS---EHPGNNL 656 (784)
Q Consensus 617 ~-~~~~~~~~~~I~v~~~gg~-~~~~al~~a~~la---~~~~~~l 656 (784)
. ...-...+.. |-+||+. +.+|=++.++++. +..++.+
T Consensus 83 ~i~~ai~~Gf~S--VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 83 DVMRAIRCGFTS--VMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0 0001112223 4578874 4445556655554 6666665
No 148
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=65.73 E-value=1.2e+02 Score=30.75 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=44.6
Q ss_pred HHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcC
Q 043446 110 FLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELK 188 (784)
Q Consensus 110 llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~ 188 (784)
.-+..-+-=+++.+||++++...--..+.++.++.+..++++++ .+ ..+..+.+-=....|+...+-+++|
T Consensus 60 VALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lg---l~-----~~~~~Sl~pkSVTtpiAi~is~~iG 130 (215)
T PF04172_consen 60 VALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLG---LS-----PEIILSLAPKSVTTPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---cC-----HHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 33444455678889999998887777777777766666666653 22 2344444443344577777766666
No 149
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=65.22 E-value=13 Score=38.73 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=67.5
Q ss_pred EEeccCCcchHHHHHHHHHHhc-CCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhccCC
Q 043446 629 AVLFFGGPDDREALAYAWRMSE-HPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIAND 707 (784)
Q Consensus 629 ~v~~~gg~~~~~al~~a~~la~-~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (784)
-+|..=.+.|+-|++.|.|+.+ ..+.++|++++=++. +++.+.+... + .-
T Consensus 30 gv~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~---------------------------a~~~lr~aLA-m-Ga 80 (260)
T COG2086 30 GVPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ---------------------------AEEALREALA-M-GA 80 (260)
T ss_pred CCCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh---------------------------hHHHHHHHHh-c-CC
Confidence 3455557999999999999999 699999999996432 2233333222 1 21
Q ss_pred CceEEEE---EecCChHHHHHHHHhc--cCCccEEEEcccCCCC-Cccc-cCcCccCCCCccccchhhh
Q 043446 708 ESVVYTE---KLANNGEETLAAIRSM--DHSHDLFIVGRGQGVT-SPLT-DGLTDWSECPELGAIGDLL 769 (784)
Q Consensus 708 ~~v~~~e---~~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~~-~~~~-~gl~~w~e~~elG~igd~l 769 (784)
++....+ ..-.|...+..++.+. ..++|||+.|+...+. +.++ ..+.+|--.|-+.-+-++-
T Consensus 81 Draili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 81 DRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred CeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 2222222 2244455555566653 4558999999997643 3333 3455665556555554443
No 150
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=64.83 E-value=12 Score=40.37 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCchhHHHHHHHhcchhHHH
Q 043446 317 FVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLM-----YQMPIREGVTLGLLMNTKGLVE 391 (784)
Q Consensus 317 ~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~m~~rG~~~ 391 (784)
+.++++=|+.|.-+|..+|+..+. .-+...++-..+-++-+.....+..+ .+.+.+|+..+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl---anP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLL---ANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh---hCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccC--CcCChhhHHHHHHHHHHHHHhHHHHHHhhccccccccc-cccccccCCCC
Q 043446 392 MIVLNVGKDQ--KVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLP-YKRRTIQKSKP 450 (784)
Q Consensus 392 l~~~~~~~~~--~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 450 (784)
+.+.+..... |.+.-..|+-+ -+.-.+-||+.|.+-.+++|..+ ++.|++.+.++
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15475 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKIRMVQLRTVSKREK 265 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 151
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=64.83 E-value=35 Score=36.16 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=70.9
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++..|-.+.... ..+.+.|++.|++.++..|+.-+.+.....+ ...++....+..+++++||.+=-|++....
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e 88 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGMTFE 88 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 455555666555 4788999999999999999998775532222 124777788889999999999889985310
Q ss_pred ccccccCcceeEEEeccCC-cchHHHHHHHHHH---hcCCCeEE
Q 043446 617 TRLAANQVTHNIAVLFFGG-PDDREALAYAWRM---SEHPGNNL 656 (784)
Q Consensus 617 ~~~~~~~~~~~I~v~~~gg-~~~~~al~~a~~l---a~~~~~~l 656 (784)
.-...-....+. |-++++ .+.+|-++.++++ ++..++.+
T Consensus 89 ~i~~Al~~G~ts-Vm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 89 KIKEALEIGFTS-VMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HHHHHHHcCCCE-EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000000111122 235664 5667777766554 56666554
No 152
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=64.28 E-value=19 Score=34.42 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhhcCC-C---cchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccc--hh-HHHHHHHHHHHHHHHHH
Q 043446 289 HSVFGAFVFGLVIPN-G---PLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGT--ST-WMITLLVIILACAGKIA 361 (784)
Q Consensus 289 ~~~lgaf~aGl~l~~-~---~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~--~~-~~~~~~~~~~~~~~K~~ 361 (784)
...-|++++|+++++ . |....+......+..++.+-+|...+|++.-...+... .. +.......++.++.-.+
T Consensus 22 G~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~ 101 (154)
T TIGR01625 22 GNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLL 101 (154)
T ss_pred cccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 345578888888887 3 33334444455556678888999999999875443221 12 22222323333344466
Q ss_pred HHHHHHHHhCCCchhHHHHHHHhc
Q 043446 362 GTLLVSLMYQMPIREGVTLGLLMN 385 (784)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~lg~~m~ 385 (784)
..++..+++|+++. ...|..-+
T Consensus 102 ~~~~~~~~~~~~~~--~~~G~~aG 123 (154)
T TIGR01625 102 VAVALIKLLRINYA--LTAGMLAG 123 (154)
T ss_pred HHHHHHHHhCCCHH--HHHHHHhc
Confidence 66777788999865 34444333
No 153
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=64.23 E-value=12 Score=40.26 Aligned_cols=127 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCchhHHHHHHHhcchhHHH
Q 043446 317 FVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLM-----YQMPIREGVTLGLLMNTKGLVE 391 (784)
Q Consensus 317 ~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~m~~rG~~~ 391 (784)
+.++++=|+.|.-+|..+|+..+. .-+...++-..+-++-+.....+..+ .+.+.+|+..+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl---anP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLL---ANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh---hCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccC--CcCChhhHHHHHHHHHHHHHhHHHHHHhhccccccccc-cccccccCCCC
Q 043446 392 MIVLNVGKDQ--KVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLP-YKRRTIQKSKP 450 (784)
Q Consensus 392 l~~~~~~~~~--~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 450 (784)
+.+.+..... |.+.-..|+-+ -+.-.+-||+.|.+-.+++|..+ ++.|++.+.++
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15476 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 154
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=64.22 E-value=12 Score=40.26 Aligned_cols=127 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCchhHHHHHHHhcchhHHH
Q 043446 317 FVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLM-----YQMPIREGVTLGLLMNTKGLVE 391 (784)
Q Consensus 317 ~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~m~~rG~~~ 391 (784)
+.++++=|+.|.-+|..+|+..+. .-+...++-..+-++-+.....+..+ .+.+.+|+..+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl---anP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLL---ANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh---hCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccC--CcCChhhHHHHHHHHHHHHHhHHHHHHhhccccccccc-cccccccCCCC
Q 043446 392 MIVLNVGKDQ--KVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLP-YKRRTIQKSKP 450 (784)
Q Consensus 392 l~~~~~~~~~--~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 450 (784)
+.+.+..... |.+.-..|+-+ -+.-.+-||+.|.+-.+++|..+ ++.|++.+.++
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15477 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 155
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=63.64 E-value=64 Score=35.94 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=52.7
Q ss_pred HHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHH
Q 043446 315 EDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEM 392 (784)
Q Consensus 315 ~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l 392 (784)
..+...+.+.+....-|++++++.+.. ..|+...+..+..++.-.+-...+.+.++++|-|++.+|...+..-..+.
T Consensus 60 Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 60 AYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 344445556666667888888887764 34554555555555566666677888999999999999998766554433
No 156
>PRK09903 putative transporter YfdV; Provisional
Probab=62.39 E-value=1.6e+02 Score=31.71 Aligned_cols=116 Identities=13% Similarity=0.138 Sum_probs=63.2
Q ss_pred cCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHH-H
Q 043446 60 FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGG-M 138 (784)
Q Consensus 60 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~-~ 138 (784)
++-|.+++.++ |+++.- +|.. .|..-.+.++.+++...-+-||..|..+....++.. ++.+...+.- +
T Consensus 171 ~~nP~iia~~~-gl~~~l--~~i~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVL-ATILVL--VGVK-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHH-HHHHHH--cCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 44566666554 454442 3321 244456789999999999999999999877665443 3333333333 3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHh-cCccCChhH
Q 043446 139 TLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAE-LKLINTELG 195 (784)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~e-l~~~~s~~g 195 (784)
+.|.++ ....++ ++.+ ....-...+++..-+++...++.+ .| .+.+..
T Consensus 240 ~~P~i~-~~~~~~---~~l~----~~~~~v~vl~aa~P~a~~~~i~A~~y~-~~~~~a 288 (314)
T PRK09903 240 LMPLAL-LLVGMA---CHLN----SEHLQMMVLAGALPPAFSGIIIASRFN-VYTRTG 288 (314)
T ss_pred HHHHHH-HHHHHH---cCCC----cHHHHHHHHHHcccHHHHHHHHHHHHc-ccHHHH
Confidence 345533 222222 2222 123344555555555666666654 34 444433
No 157
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=60.22 E-value=33 Score=36.62 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=67.8
Q ss_pred HHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CchhHHHHHHHhcchhH
Q 043446 316 DFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQM------PIREGVTLGLLMNTKGL 389 (784)
Q Consensus 316 ~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~------~~~~~~~lg~~m~~rG~ 389 (784)
.+.++++-|+.|.-+|..+|+..+... .+ ..++-..+-++- ..+++.+...|+ +.+|+..+|.+=+.-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllan-P~--~~llGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLAN-PR--TLLLGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhC-hH--HHHHHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 445688889999999999999877642 12 222222333332 234455666677 67999999988777887
Q ss_pred HHHHHHHhhcc--CCcCChhhHHHHHHHHHHHHHhHHHHHHhhcccccc
Q 043446 390 VEMIVLNVGKD--QKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARR 436 (784)
Q Consensus 390 ~~l~~~~~~~~--~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~ 436 (784)
.++.+.+.... .+.+.-..|+-+ + +.-.+-||+.|.+-.+++|
T Consensus 135 t~If~s~~lap~Llg~IaVAAYsYM---a-LvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 135 TAIYLSGKLAPELLAAIAVAAYSYM---A-LVPIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHHH---H-HHhcccchHHHhhcChHHh
Confidence 77776654221 122222333333 2 2345677888876654443
No 158
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=60.20 E-value=35 Score=36.55 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=32.4
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAA 664 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~ 664 (784)
+.++++.|.||+|+--.|.+|.+.-...+.++.++|+...
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 3579999999999999999998876554667888888643
No 159
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=60.20 E-value=1.5e+02 Score=33.16 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=64.0
Q ss_pred cCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhchhhHHHHHHHHH
Q 043446 60 FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE-MDISAIRRTGKKALAIAVGGM 138 (784)
Q Consensus 60 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle-~d~~~l~~~~~~~~~ia~~~~ 138 (784)
+++|..+..++.=+++-- +|.+|+..+ ....++-++++.--.--+|+-.|+. +|++++.+.......+-....
T Consensus 269 i~ih~~a~mIi~~~i~K~--~~lvP~~~e----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~ 342 (414)
T PF03390_consen 269 IGIHAYAWMIILVAIVKA--FGLVPESLE----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLAT 342 (414)
T ss_pred cCCcHHHHHHHHHHHHHH--hCcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHH
Confidence 599999999888777763 455553221 1234456666666666799999998 999999987765554444433
Q ss_pred HH-HHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 043446 139 TL-PFVIGGCFSFILHKKNQGMNQGTFVLFLGVALS 173 (784)
Q Consensus 139 ~~-~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls 173 (784)
.+ ..+.++.++++++.++. ..++.-|.|++
T Consensus 343 Vl~~~~~a~~vG~l~g~YPv-----EsAItaGLC~a 373 (414)
T PF03390_consen 343 VLGAVIGAFLVGKLVGFYPV-----ESAITAGLCMA 373 (414)
T ss_pred HHHHHHHHHHHHHHhCCChH-----HHHHHhhhccc
Confidence 33 34445555565544322 34555554554
No 160
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=59.26 E-value=2.6e+02 Score=30.12 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHhhcCC--CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 043446 288 THSVFGAFVFGLVIPN--GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLL 365 (784)
Q Consensus 288 ~~~~lgaf~aGl~l~~--~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l 365 (784)
.++.+=+.++|+++.- -+....+.+-++.+. +...|+-...+|+.++...... .+.......+...+.-++.++.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg-~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~ 257 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILS-GATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAG 257 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHH-HHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888775 233445566666665 8889999999999988766542 3444555566677677777777
Q ss_pred HHHHhCCCchh--HHHHHHHhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 043446 366 VSLMYQMPIRE--GVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSI 430 (784)
Q Consensus 366 ~~~~~~~~~~~--~~~lg~~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l 430 (784)
..+.++.+... ...+-. ..|-+....+++. +.| .+++..+..++...+.+.++-|+..++
T Consensus 258 ~~~~~~l~~~~~~~~vl~a-a~P~a~~~~i~A~---~y~-~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 258 ISKLIGLRGLELSVAILQA-ALPGGAVAAVLAT---EYE-VDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHhCCChHHHHHHHHHH-cCChhhHHHHHHH---HhC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777775433 222222 2344444444443 333 245555555555556667776766554
No 161
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=59.07 E-value=25 Score=37.41 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=31.6
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
.+.++.|.||+|+--.|.++.+.-...+.++.++|+..
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDT 57 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDT 57 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEec
Confidence 45678899999999999999988765567888999864
No 162
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=58.52 E-value=1.6e+02 Score=27.69 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccCCCh---hHHHHHHHHhhcccccCCcccccccccCcccHH-HHHHHHHHHHHHHHH
Q 043446 37 PLFILQLTLVVVTTRLLVLVLKPFRQPR---VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVM-VLETMANVGLLYFLF 112 (784)
Q Consensus 37 ~~~l~~l~lil~~~~l~~~l~~rl~~P~---iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~-~l~~l~~igl~~llF 112 (784)
..++.|+++++.+..+...+.+-+++|- ++|.++.=+.+. ++..+ +..-.. .--.+.++++.|+=-
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk-------~~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVK-------LEQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 3567888888888877777777777653 445544322222 22221 000011 112335555555555
Q ss_pred HHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 113 LVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFI 151 (784)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 151 (784)
.+|+=..++.+++++.+....-+.+.++.+++...+..+
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888777766666666665554444433
No 163
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.41 E-value=2.5e+02 Score=29.68 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=26.5
Q ss_pred HHHHHHH-hhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHH
Q 043446 313 KLEDFVS-GLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGK 359 (784)
Q Consensus 313 ~l~~~~~-~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K 359 (784)
|+.+..+ -+-+|+.|..+.-+-++..-. ..+|.+..++.+.+...|
T Consensus 222 klrS~hN~ylTlPvLf~MiSnHyp~~y~~-~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 222 KLRSRHNNYLTLPVLFLMISNHYPMTYGH-PYNWLILALIMLAGALIR 268 (300)
T ss_pred HHHhhhcceeHHHHHHHHHhccCcccccc-chhHHHHHHHHHHHHHHH
Confidence 3444433 455899998876666554333 356765555555555444
No 164
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=57.69 E-value=2.3e+02 Score=29.01 Aligned_cols=83 Identities=11% Similarity=0.186 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhc
Q 043446 96 VMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVT 175 (784)
Q Consensus 96 ~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~T 175 (784)
.+.+..+ +|-...-|..-+--+++.+||++++.+.-...+.++.+..+..++++++ .+ ..+..+.+-=..
T Consensus 58 ~~~l~~l--LgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg---~~-----~~i~~Sl~pkSv 127 (226)
T TIGR00659 58 GGVINDL--LGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLG---LG-----PEIIASLLPKSV 127 (226)
T ss_pred hHHHHHh--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---cC-----HHHHHHhhhHHh
Confidence 3444443 2333344455555788999999998887777777777766666666653 22 122333332222
Q ss_pred cHHHHHHHHHhcC
Q 043446 176 AFPVLARILAELK 188 (784)
Q Consensus 176 s~~vv~~il~el~ 188 (784)
..|+...+-++.|
T Consensus 128 TtpiAm~vs~~iG 140 (226)
T TIGR00659 128 TTPIAMHVSEMIG 140 (226)
T ss_pred hHHHHHHHHHHhC
Confidence 3466667666665
No 165
>COG0679 Predicted permeases [General function prediction only]
Probab=57.41 E-value=2.7e+02 Score=29.87 Aligned_cols=137 Identities=17% Similarity=0.155 Sum_probs=83.7
Q ss_pred hhhhHHHHHHHhhcCC--CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 043446 288 THSVFGAFVFGLVIPN--GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLL 365 (784)
Q Consensus 288 ~~~~lgaf~aGl~l~~--~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l 365 (784)
.++.+=++++|+++.. -+....+.+-++.+. +-..|+-++..|+.++...... ..+...........+..++..++
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~-~a~~pl~li~lG~~L~~~~~~~-~~~~~~~~~~~~kll~~Pl~~~~ 244 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLA-SAASPLALIALGLSLAFLKLKG-SKPPIILIALSLKLLLAPLVALL 244 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhhhhHHHHHHhhhcchhhhcc-ccchhHHHHHHHHHHHHHHHHHH
Confidence 4677777888888774 233335555666665 8889999999999999854442 23333444444456777888888
Q ss_pred HHHHhCCCchhHHHHHH-HhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhh
Q 043446 366 VSLMYQMPIREGVTLGL-LMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSI 430 (784)
Q Consensus 366 ~~~~~~~~~~~~~~lg~-~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l 430 (784)
..+.++++..+...+=+ ...|-+....+++.. .+. +++.....+....+.+.++-|.....
T Consensus 245 ~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~-~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 245 VAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGG-DPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999987665422211 145666666555544 333 33444444444445566666555443
No 166
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=57.20 E-value=27 Score=37.35 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=34.1
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCe-EEEEEEee
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHPGN-NLTVMRFI 662 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~~~-~ltv~~~~ 662 (784)
.+.+|+|-|.||+|+---|.++.+.|+..+- ++.|++..
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 4679999999999999999999999988766 88888774
No 167
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=55.67 E-value=38 Score=32.18 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=27.8
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
+|++.|.||+|+--.+.++.+...+. -++.++++..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 58899999999999999887766542 4667777753
No 168
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=55.18 E-value=53 Score=34.80 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=71.2
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCC-
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNG- 615 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~- 615 (784)
++..|-.+...+ ..+...+++.|++.++.+|+..+.+.....| ...+....+...+++.+||.+=-|++...
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g-----~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e 88 (283)
T PRK07998 16 KHVLAGAFNTTN--LETTISILNAIERSGLPNFIQIAPTNAQLSG-----YDYIYEIVKRHADKMDVPVSLHLDHGKTFE 88 (283)
T ss_pred CCCEEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECcHhHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECcCCCCHH
Confidence 344555555544 4688999999999999999998665432222 23477888899999999999988988531
Q ss_pred CccccccCcceeEEEeccCCcchH-HHH---HHHHHHhcCCCeEE
Q 043446 616 STRLAANQVTHNIAVLFFGGPDDR-EAL---AYAWRMSEHPGNNL 656 (784)
Q Consensus 616 ~~~~~~~~~~~~I~v~~~gg~~~~-~al---~~a~~la~~~~~~l 656 (784)
.....-...+..|.+ |||..+- |=+ +-+.++|+..++.+
T Consensus 89 ~i~~Ai~~GftSVM~--DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 89 DVKQAVRAGFTSVMI--DGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHHHHHHcCCCEEEE--eCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 000001123445554 8885443 344 33556677777654
No 169
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=53.69 E-value=46 Score=35.33 Aligned_cols=111 Identities=8% Similarity=0.053 Sum_probs=69.2
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++..|-.+...+ ..+...+++.|++.++..|+.-+.+.....| -..+........+++++||.+=-|++....
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~~~e 88 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHEDLD 88 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 455556666555 4789999999999999999987765432222 124778888999999999999889986410
Q ss_pred -ccccccCcceeEEEeccCCc-chHHHHHH---HHHHhcCCCeEE
Q 043446 617 -TRLAANQVTHNIAVLFFGGP-DDREALAY---AWRMSEHPGNNL 656 (784)
Q Consensus 617 -~~~~~~~~~~~I~v~~~gg~-~~~~al~~---a~~la~~~~~~l 656 (784)
....-...+..| -+|||. +.+|=++. +.++|+..|+.+
T Consensus 89 ~i~~ai~~GftSV--MiDgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12737 89 DIKKKVRAGIRSV--MIDGSHLSFEENIAIVKEVVEFCHRYDASV 131 (284)
T ss_pred HHHHHHHcCCCeE--EecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 000011123444 368873 23333333 444555555544
No 170
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=53.60 E-value=2.5e+02 Score=28.34 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=33.0
Q ss_pred HHHHhh-hcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 149 SFILHK-KNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAI 217 (784)
Q Consensus 149 ~~~l~~-~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~ 217 (784)
+|+..+ +|..... ...-++|-..|.| +++..+-++.+ .+.+..+......++.....++=..++.
T Consensus 10 gYia~r~~G~r~Gl-~ltg~~GGlvSST--A~t~~la~~~r-~~p~~~~~~~~~i~lA~~~m~~R~l~iv 75 (211)
T PF13194_consen 10 GYIAVRLLGPRRGL-LLTGLLGGLVSST--ATTVSLARRSR-ENPELSRLLAAGILLASAVMFVRVLLIV 75 (211)
T ss_pred HHHHHHHHcccchH-HHHHHHHHHHHHH--HHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344434 4433322 3344555555555 44555544444 3445666666666676666654444443
No 171
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=53.47 E-value=1.1e+02 Score=33.04 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=50.7
Q ss_pred hhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 290 SVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGT-STWMITLLVIILACAGKIAGTLLVS 367 (784)
Q Consensus 290 ~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~l~~ 367 (784)
.++.+.++|...|. +.....+.. |... .+...+.|...|++++.+++.+. ..|...+......++.=++..+...
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~~--~~~~-~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIKP--EYVI-KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccch--hhhH-HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888887 333222221 1222 33355677889999998887642 3565555555555555555555555
Q ss_pred HHhCCCchhHHHHHHH
Q 043446 368 LMYQMPIREGVTLGLL 383 (784)
Q Consensus 368 ~~~~~~~~~~~~lg~~ 383 (784)
+..+-...+.+..|+.
T Consensus 83 ~l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 83 RLFPAFLPPELALGLL 98 (313)
T ss_pred HHhhccCCHHHHHHHH
Confidence 5554222344555553
No 172
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=53.19 E-value=57 Score=34.78 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHH
Q 043446 65 VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVI 144 (784)
Q Consensus 65 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~ 144 (784)
.+-.++.|+++|+. .+++.+.+-| -..+-+-|+-|..|-.+|++.+.+.+-.-..+++..++++...
T Consensus 174 ~llP~iiG~iLGNL----D~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 174 ALLPIIIGMILGNL----DPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHhcC----CHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 34567899999952 3333333222 2223355688999999999999999988888888877776655
Q ss_pred HHHHHHHH
Q 043446 145 GGCFSFIL 152 (784)
Q Consensus 145 ~~~~~~~l 152 (784)
.+....++
T Consensus 241 ~~~~dr~i 248 (314)
T PF03812_consen 241 LYLADRLI 248 (314)
T ss_pred HHHHHHHH
Confidence 55555544
No 173
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=51.80 E-value=3.1e+02 Score=28.89 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHHHhhccHHHHHHHHHh--cCccCChhHHHHHHHHHHHHHHHHHHHH
Q 043446 167 FLGVALSVTAFPVLARILAE--LKLINTELGRIAMSSALINDMCAWVLLA 214 (784)
Q Consensus 167 ~lg~~ls~Ts~~vv~~il~e--l~~~~s~~g~l~l~~a~i~D~~~~~ll~ 214 (784)
.....++.....++.-+.+. .+....+++..++-+-++|-....+-.-
T Consensus 147 ~~v~~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGid 196 (273)
T PF01889_consen 147 LIVLGLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGID 196 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhee
Confidence 33333333333444444443 3556677888888888777766654444
No 174
>COG0679 Predicted permeases [General function prediction only]
Probab=51.77 E-value=2.7e+02 Score=29.89 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=62.9
Q ss_pred hhHHHHHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 290 SVFGAFVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSL 368 (784)
Q Consensus 290 ~~lgaf~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~ 368 (784)
+++.-...|..+.+ .....+-.+.+..++..+.+|..+...=.+.+.+... .+.......+..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777 6666777778889999999999776665666654431 3444444444555555666666666
Q ss_pred HhCCCchhHH--HHHHHhcchhHHHHHHH
Q 043446 369 MYQMPIREGV--TLGLLMNTKGLVEMIVL 395 (784)
Q Consensus 369 ~~~~~~~~~~--~lg~~m~~rG~~~l~~~ 395 (784)
..+.+.++.. ..+...+.-|-.++-++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~ 116 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVA 116 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHH
Confidence 7777766553 33343444555544333
No 175
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=51.54 E-value=67 Score=34.99 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=70.2
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCC-CceEEEecCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP-CSVGILVDRGLNG 615 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap-c~V~ilv~rg~~~ 615 (784)
.+..|-.+...+ ..+...|++.|++.++.+|+.-+.+.....| ...+..+.+...++++ +||.+=-|+|...
T Consensus 14 ~~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g-----~~~~~~~~~~~ae~~~~VPValHLDHg~~~ 86 (347)
T TIGR01521 14 FGYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAG-----APFLRHLILAAIEEYPHIPVVMHQDHGNSP 86 (347)
T ss_pred cCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCCCH
Confidence 444555666555 4788999999999999999998876533322 1347788888899997 9999988998541
Q ss_pred Cc-cccccCcceeEEEeccCCc--------chHHHHHH---HHHHhcCCCeE
Q 043446 616 ST-RLAANQVTHNIAVLFFGGP--------DDREALAY---AWRMSEHPGNN 655 (784)
Q Consensus 616 ~~-~~~~~~~~~~I~v~~~gg~--------~~~~al~~---a~~la~~~~~~ 655 (784)
.. ...-...+..|. +|||. +-+|=++. +.++|+..++.
T Consensus 87 e~i~~Ai~~GFtSVM--iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gvs 136 (347)
T TIGR01521 87 ATCQRAIQLGFTSVM--MDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGAS 136 (347)
T ss_pred HHHHHHHHcCCCEEe--ecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 00 000111233443 68985 33444444 34455555554
No 176
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=51.32 E-value=65 Score=33.63 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=30.2
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEee
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHP--GNNLTVMRFI 662 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~--~~~ltv~~~~ 662 (784)
.++|+|++.||+|+-..|.++.++.++. +.++..+|+.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 4689999999999998888888887654 3567777764
No 177
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=50.51 E-value=50 Score=35.03 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=68.9
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++..|-.+...+ ..+...+++.|++.++..|+.-..+.....| -..+........+++++||.+=-|++....
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~~~e 88 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGTDFE 88 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 344455555555 4788999999999999999998775533222 124777788889999999999889985310
Q ss_pred -ccccccCcceeEEEeccCCc-chHHHHHH---HHHHhcCCCeEE
Q 043446 617 -TRLAANQVTHNIAVLFFGGP-DDREALAY---AWRMSEHPGNNL 656 (784)
Q Consensus 617 -~~~~~~~~~~~I~v~~~gg~-~~~~al~~---a~~la~~~~~~l 656 (784)
....-...+..|. +|||. +.+|=++. +.++|+..++.+
T Consensus 89 ~i~~ai~~GftSVM--~DgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12857 89 QVMKCIRNGFTSVM--IDGSKLPLEENIALTKKVVEIAHAVGVSV 131 (284)
T ss_pred HHHHHHHcCCCeEE--EeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 0000111234444 68873 33333433 344555555544
No 178
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=50.30 E-value=78 Score=32.43 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=49.3
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCcccccc
Q 043446 543 PLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAAN 622 (784)
Q Consensus 543 ~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~~ 622 (784)
+++.++|.+...++..+.+.+.++|.|++|-.. .+..+..+.+.+-+..+.||.++.... . + -.
T Consensus 10 h~~liDPdK~~~~~~~~~~~~~gtDai~VGGS~----------~~~~~d~vv~~ik~~~~lPvilfPg~~-~---~--vs 73 (230)
T PF01884_consen 10 HATLIDPDKPNPEEALEAACESGTDAIIVGGSD----------TGVTLDNVVALIKRVTDLPVILFPGSP-S---Q--VS 73 (230)
T ss_dssp EEEEE-TTSS-HHHHHHHHHCTT-SEEEEE-ST----------HCHHHHHHHHHHHHHSSS-EEEETSTC-C---G----
T ss_pred eEEEECCCCCCcHHHHHHHHhcCCCEEEECCCC----------CccchHHHHHHHHhcCCCCEEEeCCCh-h---h--cC
Confidence 678999999999999999999999999999542 123366666777777888988873221 1 1 12
Q ss_pred CcceeEEEeccCC
Q 043446 623 QVTHNIAVLFFGG 635 (784)
Q Consensus 623 ~~~~~I~v~~~gg 635 (784)
...+.+++|..=+
T Consensus 74 ~~aDail~~svlN 86 (230)
T PF01884_consen 74 PGADAILFPSVLN 86 (230)
T ss_dssp TTSSEEEEEEETT
T ss_pred cCCCEEEEEEEec
Confidence 2356777776543
No 179
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=49.23 E-value=1.1e+02 Score=32.48 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHH
Q 043446 65 VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVI 144 (784)
Q Consensus 65 iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~ 144 (784)
.+-.++.|+++|+. .+++.+.+-| -..+-.-|+-|..|-.+|++.+.+.+-.-..+++..++++...
T Consensus 174 ~ilPlliG~ilGNL----D~~~r~fl~~---------~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 174 AVLPFLVGFALGNL----DPELRDFFSK---------AVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHhcC----CHHHHHHhcc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 44567899999952 2333332222 2223355788999999999999998888888888777776666
Q ss_pred HHHHHHHH
Q 043446 145 GGCFSFIL 152 (784)
Q Consensus 145 ~~~~~~~l 152 (784)
.+....++
T Consensus 241 ~~~~dr~~ 248 (314)
T TIGR00793 241 LILADKFI 248 (314)
T ss_pred HHHHHHHh
Confidence 65555544
No 180
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=48.96 E-value=82 Score=34.40 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=71.1
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCC-CceEEEecCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP-CSVGILVDRGLNG 615 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap-c~V~ilv~rg~~~ 615 (784)
++..|-.+.... -.+...|++.|++.++.+|+.-+.+.....| ...+..+.+...++++ +||.+=-|+|...
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g-----~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~ 88 (347)
T PRK13399 16 NGYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRGARKYAG-----DAMLRHMVLAAAEMYPDIPICLHQDHGNSP 88 (347)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCC-----HHHHHHHHHHHHHhcCCCcEEEECCCCCCH
Confidence 455555666555 4788999999999999999998876543323 1247788888898996 9999988998641
Q ss_pred Cc-cccccCcceeEEEeccCCcc--------hHHHHHH---HHHHhcCCCeEEE
Q 043446 616 ST-RLAANQVTHNIAVLFFGGPD--------DREALAY---AWRMSEHPGNNLT 657 (784)
Q Consensus 616 ~~-~~~~~~~~~~I~v~~~gg~~--------~~~al~~---a~~la~~~~~~lt 657 (784)
.. ...-...+..|. +|||.. .+|=++. ..++|+..++.+-
T Consensus 89 e~i~~Ai~~GFtSVM--iDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 89 ATCQSAIRSGFTSVM--MDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred HHHHHHHhcCCCEEE--EeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 00 000111233443 688855 3454444 3444555555443
No 181
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=47.33 E-value=62 Score=34.30 Aligned_cols=111 Identities=8% Similarity=0.026 Sum_probs=69.2
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++-.|-.+...+ ..+...|++.|++.++..|+.-+.+.....+ ...+........+++++||.+=-|+|....
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~~~e 86 (282)
T TIGR01858 14 GGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHESLD 86 (282)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 444555565555 4788999999999999999998776533222 123778888999999999999889985410
Q ss_pred -ccccccCcceeEEEeccCCcc-hHHHHHH---HHHHhcCCCeEE
Q 043446 617 -TRLAANQVTHNIAVLFFGGPD-DREALAY---AWRMSEHPGNNL 656 (784)
Q Consensus 617 -~~~~~~~~~~~I~v~~~gg~~-~~~al~~---a~~la~~~~~~l 656 (784)
....-...+..|. +|||.- -+|=++. +.++|+..++.+
T Consensus 87 ~i~~ai~~GFtSVM--~DgS~lp~eeNi~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 87 DIRQKVHAGVRSAM--IDGSHFPFAQNVKLVKEVVDFCHRQDCSV 129 (282)
T ss_pred HHHHHHHcCCCEEe--ecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000111234444 688743 2333333 445555555543
No 182
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=47.28 E-value=2.6e+02 Score=34.23 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhcc
Q 043446 104 NVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTA 176 (784)
Q Consensus 104 ~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts 176 (784)
++-+-++....|++.|...+.+ +.............-++.+.+.+.++ +++ + ..++.+|.+++.-.
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~-k~p--~---~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYC-KLP--L---RDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCc--h---hHHHHHHHHHHhhh
Confidence 4455567778899999999999 33333333333333444555555532 233 3 56788888877543
No 183
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=46.98 E-value=29 Score=39.34 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHhcCccEEEEc---cccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCC-C---ccccccCc
Q 043446 552 SMHEDICNLAEDKRVALIIIP---FHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNG-S---TRLAANQV 624 (784)
Q Consensus 552 ~~~~~I~~~A~~~~~dlIv~g---~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~-~---~~~~~~~~ 624 (784)
...++||.+|+++++|+|++| ||...... ..-+..++.+-+.-+..-||..=++-|.+..- . ...--..+
T Consensus 39 ~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr---~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~Dp 115 (646)
T KOG2310|consen 39 VTFEEILEIAQENDVDMILLGGDLFHENKPSR---KTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDP 115 (646)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCCccH---HHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCC
Confidence 356899999999999999999 34321111 11233466666677788899999987776421 1 11112234
Q ss_pred ceeEEEeccC
Q 043446 625 THNIAVLFFG 634 (784)
Q Consensus 625 ~~~I~v~~~g 634 (784)
.-+|.+|+++
T Consensus 116 NlNIsIPVFs 125 (646)
T KOG2310|consen 116 NLNISIPVFS 125 (646)
T ss_pred CcceeeeeEE
Confidence 4578888764
No 184
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=46.78 E-value=4.7e+02 Score=29.51 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHH
Q 043446 177 FPVLARILAELKLINTELGRIAMSSALINDMCAWVLL 213 (784)
Q Consensus 177 ~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll 213 (784)
+|++....+.+|..+.+.--.+++++.+.|..+.++.
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 4788888888886555555678899999999887543
No 185
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=46.12 E-value=1.9e+02 Score=27.20 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=22.1
Q ss_pred hHHHHH--HhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043446 323 LPLFFA--ISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY 370 (784)
Q Consensus 323 ~plfF~--~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~ 370 (784)
+|+||+ .+|.-..++.+.+ ..|.+++.+++..+++=...++...+..
T Consensus 69 m~LfFVPagVGim~~~~ll~~-~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQ-YPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567775 5555555555553 3444444444444333333334333333
No 186
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=45.97 E-value=46 Score=35.75 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=33.0
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAA 664 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~ 664 (784)
..++++.|.||+|+--.|.+|.+.....+..+.++|+...
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 3568899999999999999999887655677889988543
No 187
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=44.44 E-value=76 Score=33.54 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=69.2
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++..|-.+...+ .++...+++.|++.++..|+.-+.+.....| -..+....++..+++++||.+--|++....
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-----~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~ 83 (276)
T cd00947 11 GGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-----LELLVAMVKAAAERASVPVALHLDHGSSFE 83 (276)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 444555555555 4789999999999999999988765432222 234788888999999999999889985310
Q ss_pred -ccccccCcceeEEEeccCCc-chHHHHHH---HHHHhcCCCeEE
Q 043446 617 -TRLAANQVTHNIAVLFFGGP-DDREALAY---AWRMSEHPGNNL 656 (784)
Q Consensus 617 -~~~~~~~~~~~I~v~~~gg~-~~~~al~~---a~~la~~~~~~l 656 (784)
....-...+..|. +|||. +.+|=++. +.++|+..++.+
T Consensus 84 ~i~~ai~~GftSVM--iD~S~l~~eeNi~~t~~vv~~ah~~gv~V 126 (276)
T cd00947 84 LIKRAIRAGFSSVM--IDGSHLPFEENVAKTKEVVELAHAYGVSV 126 (276)
T ss_pred HHHHHHHhCCCEEE--eCCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000011234444 67873 33444444 344455555544
No 188
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=44.34 E-value=75 Score=33.75 Aligned_cols=111 Identities=7% Similarity=-0.006 Sum_probs=68.2
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++-.|-.+...+ ..+...+++.|++.++..|+.-..+.....+ ...+........+++++||.+=-|+|....
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~~~e 88 (286)
T PRK12738 16 NGYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHIA-----LEEIYALCSAYSTTYNMPLALHLDHHESLD 88 (286)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 444555555554 4788999999999999999987665432212 234778888999999999999889985410
Q ss_pred c-cccccCcceeEEEeccCCcc-hHHHHHH---HHHHhcCCCeEE
Q 043446 617 T-RLAANQVTHNIAVLFFGGPD-DREALAY---AWRMSEHPGNNL 656 (784)
Q Consensus 617 ~-~~~~~~~~~~I~v~~~gg~~-~~~al~~---a~~la~~~~~~l 656 (784)
. ...-...+..|. +|||.. .+|=++. +.++|+..++.+
T Consensus 89 ~i~~ai~~GFtSVM--~DgS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 89 DIRRKVHAGVRSAM--IDGSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred HHHHHHHcCCCeEe--ecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0 000111234444 688743 3333433 344455545443
No 189
>PRK10711 hypothetical protein; Provisional
Probab=44.22 E-value=3.7e+02 Score=27.57 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhc
Q 043446 96 VMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVT 175 (784)
Q Consensus 96 ~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~T 175 (784)
.+++..+ +|-.-..|..-+--+++.+||++++...--..+.++.+..+..++.+++ .+ ..+..+..-=+.
T Consensus 59 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg---~~-----~~~~~Sl~pkSV 128 (231)
T PRK10711 59 SEVLNDL--LQPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMG---AT-----PEIAASILPKSV 128 (231)
T ss_pred cHHHHhh--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---cC-----HHHHHHHhhhhh
Confidence 3444444 2333344455555788889999988877666677776666666666543 22 122233222222
Q ss_pred cHHHHHHHHHhcC
Q 043446 176 AFPVLARILAELK 188 (784)
Q Consensus 176 s~~vv~~il~el~ 188 (784)
..|+...+-++.|
T Consensus 129 TtPIAm~is~~iG 141 (231)
T PRK10711 129 TTPIAMAVGGSIG 141 (231)
T ss_pred hHHHHHHHHHHhC
Confidence 2466666655555
No 190
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=44.16 E-value=1.4e+02 Score=35.02 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=46.9
Q ss_pred hhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCchhHHHHHHHhcchhHH
Q 043446 320 GLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLM---------YQMPIREGVTLGLLMNTKGLV 390 (784)
Q Consensus 320 ~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~---------~~~~~~~~~~lg~~m~~rG~~ 390 (784)
.+++|....-.|..+|...+.. .+..++.+.+.+++.-.+.+-...++ .+++|.+++.+|.++++-.-+
T Consensus 70 ~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 70 LYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 5678888889999999988874 44444444434333333333222221 256999999999999988866
Q ss_pred HHH
Q 043446 391 EMI 393 (784)
Q Consensus 391 ~l~ 393 (784)
+..
T Consensus 148 AVl 150 (559)
T TIGR00840 148 AVL 150 (559)
T ss_pred HHH
Confidence 554
No 191
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=43.51 E-value=88 Score=34.11 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=52.9
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEcccccccc-CCc-ccc--------cChhHHHHHHHhhccCCCceE
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTV-DGG-MEA--------TNPAFRMVNQNLLANAPCSVG 606 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~-~~~--------~~~~~~~~~~~vl~~apc~V~ 606 (784)
.+..|-.+-... ..+.+.|++.|++.+++.|+.-+.+.... .+. ++. +...+........+++++||.
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa 91 (345)
T cd00946 14 NGFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVV 91 (345)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 344445555544 47889999999999999999988764322 111 000 001477888899999999999
Q ss_pred EEecCCCC
Q 043446 607 ILVDRGLN 614 (784)
Q Consensus 607 ilv~rg~~ 614 (784)
+=-|++..
T Consensus 92 lHLDHg~~ 99 (345)
T cd00946 92 LHTDHCAK 99 (345)
T ss_pred EECCCCCC
Confidence 98899854
No 192
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=42.47 E-value=1e+02 Score=33.84 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043446 105 VGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILH 153 (784)
Q Consensus 105 igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~ 153 (784)
.|+.+.++..|.+.|++.+++..++...+++.-+. .+.+.-..++.+.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~-q~~i~pl~~f~~~ 164 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVP-QYLIMPLLGFLLS 164 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHH-HHHHHHHHHHhhh
Confidence 66778999999999999999999888766544322 4544444444433
No 193
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=41.81 E-value=3.7e+02 Score=31.79 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-hhHHHHHHHHHHhhccHHHHHH-HHHhcC
Q 043446 131 LAIAVGGMTLPFVIGGCFSFILHKKNQGMN-QGTFVLFLGVALSVTAFPVLAR-ILAELK 188 (784)
Q Consensus 131 ~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~al~lg~~ls~Ts~~vv~~-il~el~ 188 (784)
.+++.++..+.+++.+++..++. |...+ ....++.+++-+++=+..++.. +-+|++
T Consensus 465 glva~iAL~~~l~l~l~vmsll~--G~tLtLpgIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 465 GWVANVALIANMVCLFGLLALIP--GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 34455555555555555444441 11111 1245555655555555444443 444444
No 194
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=41.31 E-value=83 Score=33.41 Aligned_cols=111 Identities=7% Similarity=0.005 Sum_probs=68.4
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGS 616 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~ 616 (784)
++..|-.+...+ ..+...+++.|++.++..|+.-+.+.....|. ..+........+++++||.+=-|++....
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~-----~~~~~~~~~~A~~~~VPV~lHLDHg~~~e 88 (284)
T PRK09195 16 GGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAGT-----EYLLAIVSAAAKQYHHPLALHLDHHEKFD 88 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCH-----HHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 344555555554 47899999999999999999987754322221 23777888999999999999889985310
Q ss_pred c-cccccCcceeEEEeccCCcch-HHHH---HHHHHHhcCCCeEE
Q 043446 617 T-RLAANQVTHNIAVLFFGGPDD-REAL---AYAWRMSEHPGNNL 656 (784)
Q Consensus 617 ~-~~~~~~~~~~I~v~~~gg~~~-~~al---~~a~~la~~~~~~l 656 (784)
. ...-...+..|. +|||.-+ +|=+ +-+.++|+..++.+
T Consensus 89 ~i~~Ai~~GftSVM--~DgS~l~~eeNi~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 89 DIAQKVRSGVRSVM--IDGSHLPFAQNISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred HHHHHHHcCCCEEE--eCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 0 000111234443 6887432 2223 33445555555443
No 195
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=41.24 E-value=97 Score=33.81 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 554 HEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 554 ~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
..+-.+.+++...|.|.|.---. ..+ --...+++++..||||.++
T Consensus 36 g~~a~~~~~~~~PDVi~ld~emp-~md---------gl~~l~~im~~~p~pVimv 80 (350)
T COG2201 36 GREAIDKVKKLKPDVITLDVEMP-VMD---------GLEALRKIMRLRPLPVIMV 80 (350)
T ss_pred HHHHHHHHHhcCCCEEEEecccc-ccc---------HHHHHHHHhcCCCCcEEEE
Confidence 35666778999999999974421 112 2244678999999999997
No 196
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=41.22 E-value=2.4e+02 Score=27.49 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=49.6
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhH
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ 534 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~ 534 (784)
|+++++.+..+.-.++.++..+.. ..+.++.++|+=.-.+.. +++-.+..+.+.+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~--~~~~~~~~~~vdh~~~~~-----------------------s~~~~~~v~~~~~ 55 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR--RNGIKLIAVHVDHGLREE-----------------------SDEEAEFVEEICE 55 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT--TTTTEEEEEEEE-STSCC-----------------------HHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH--hcCCCeEEEEEecCCCcc-----------------------cchhHHHHHHHHH
Confidence 688999988888888888888874 456688888887432211 1111222233333
Q ss_pred ccCceEEEEEEEec---CCCCh--------HHHHHHHHHhcCccEEEEcccc
Q 043446 535 HTGCVTVQPLTAIS---PYSSM--------HEDICNLAEDKRVALIIIPFHK 575 (784)
Q Consensus 535 ~~~~v~v~~~~~vs---~~~~~--------~~~I~~~A~~~~~dlIv~g~h~ 575 (784)
. .+++......-- +..+. ++-+.+.|++.+++.|++|.|.
T Consensus 56 ~-~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 56 Q-LGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp H-TT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred h-cCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 3 344443332220 11121 1344568889999999999984
No 197
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=40.71 E-value=5.3e+02 Score=28.31 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=55.1
Q ss_pred hhhHHHHHHHhhcCC-Ccch-----hHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHH
Q 043446 289 HSVFGAFVFGLVIPN-GPLG-----LTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAG 362 (784)
Q Consensus 289 ~~~lgaf~aGl~l~~-~~~~-----~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~ 362 (784)
++.+=+.++|+++.- ++.. .-+.+-++.+. ....|+-.+.+|..+..........+......++..++.-++.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 566666777777765 3222 44555566665 8889999999999887543332123333344466677777777
Q ss_pred HHHHHHHhCCCch
Q 043446 363 TLLVSLMYQMPIR 375 (784)
Q Consensus 363 ~~l~~~~~~~~~~ 375 (784)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7778888876543
No 198
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=39.99 E-value=1e+02 Score=28.66 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccC-CCceEEEecCCC
Q 043446 551 SSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANA-PCSVGILVDRGL 613 (784)
Q Consensus 551 ~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~a-pc~V~ilv~rg~ 613 (784)
....+.+.+++++++++.||+|...+. +|.-.........+++++-++. ++||.. +|..+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV~~-~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPVIL-VDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEEEE-EECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcEEE-ECCCh
Confidence 578899999999999999999998654 4543333445788888888886 899887 55544
No 199
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=39.77 E-value=5.6e+02 Score=28.30 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=60.6
Q ss_pred HHhHc-ccCCChhHHH-HHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhchhhH
Q 043446 54 VLVLK-PFRQPRVISE-IIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVE-MDISAIRRTGKKA 130 (784)
Q Consensus 54 ~~l~~-rl~~P~iv~~-ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle-~d~~~l~~~~~~~ 130 (784)
+.++. .+++|..+.+ ++.-.++-- .|..|+-.+ ....+.-++++.=-.-.+|+-.|+- +|++++-+...-.
T Consensus 280 g~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i~----~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~ 353 (438)
T COG3493 280 GGILGKFIGLPGPVAFMIILVAILKA--ANLVPKEIE----EGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQ 353 (438)
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHHH----HHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchh
Confidence 44444 4668977733 333333332 233331110 1124455666665566689999998 9999998876655
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhh
Q 043446 131 LAIAVGGMTLP-FVIGGCFSFILHKKNQGMNQGTFVLFLGVALSV 174 (784)
Q Consensus 131 ~~ia~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~ 174 (784)
..+-..++.+. ...++..++++..++. ..++.-|.|++.
T Consensus 354 ~vii~~~vVl~~i~~~~f~grl~~~YPV-----EaAI~aglC~a~ 393 (438)
T COG3493 354 NVIIALSVVLGAILGGAFVGRLMGFYPV-----EAAITAGLCMAN 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCch-----HHHHHHhHHhcC
Confidence 55555555444 4455555555543322 345555577753
No 200
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=39.47 E-value=5.2e+02 Score=27.91 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHH------HHHHHHHhhcc
Q 043446 45 LVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGL------LYFLFLVGVEM 118 (784)
Q Consensus 45 lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl------~~llF~~Gle~ 118 (784)
.+++...+++.-.+|---|.+.-.|-.|+++.+.-.+-. ..+.+. ..++.+-+.|+ .++.+-+|--+
T Consensus 5 Mi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~----g~~~~g---g~l~~~~~~gi~~~l~P~LIFlGIGAmt 77 (354)
T TIGR01109 5 MLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGL----GLTAEG---GILALFYKVGIGSGIAPLLIFMGIGALT 77 (354)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcccc----ccccCC---chHHHHHHHHHhcchHHHHHHHhccHHh
Confidence 344444455566666677888889999999886311100 111111 23332333332 34666778899
Q ss_pred ChhHHHhchhhHHHHHHHH
Q 043446 119 DISAIRRTGKKALAIAVGG 137 (784)
Q Consensus 119 d~~~l~~~~~~~~~ia~~~ 137 (784)
|+.-+..+.|..+.-+..+
T Consensus 78 DFgpllanP~~~llGaaAQ 96 (354)
T TIGR01109 78 DFGPLLANPRTLLLGAAAQ 96 (354)
T ss_pred hhHHHHhChHHHHHHHHHH
Confidence 9999999997544433333
No 201
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=39.36 E-value=3.9e+02 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhc
Q 043446 163 TFVLFLGVALSVTAFPVLARILAEL 187 (784)
Q Consensus 163 ~~al~lg~~ls~Ts~~vv~~il~el 187 (784)
..+++..+-.+.-+..++..=++|.
T Consensus 87 iaall~~iG~sVd~~IVifdRIre~ 111 (189)
T PF02355_consen 87 IAALLTIIGYSVDDNIVIFDRIREE 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcceeehHHHHHH
Confidence 4555555556666655555544443
No 202
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=39.34 E-value=3.3e+02 Score=26.45 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=53.3
Q ss_pred hchhhhHHHHHHHhhcCC-Ccc-hhHHHHHHHHHHHhhhhHHHHHHhhccccccccccc--hhHHHHHHHHHHHHHHHHH
Q 043446 286 IGTHSVFGAFVFGLVIPN-GPL-GLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGT--STWMITLLVIILACAGKIA 361 (784)
Q Consensus 286 ~G~~~~lgaf~aGl~l~~-~~~-~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~--~~~~~~~~~~~~~~~~K~~ 361 (784)
+.+...-|+.+.|+++++ .+. ..........+..++.+-+|...+|++.-...+... ..+...+.-+++. +.-.+
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~-~~~~~ 99 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIIT-LVPLL 99 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Confidence 344455677888888876 211 001344455556678888999999998865443321 2333333333333 33444
Q ss_pred HHHHHHH-HhCCCchhHHHHHHH
Q 043446 362 GTLLVSL-MYQMPIREGVTLGLL 383 (784)
Q Consensus 362 ~~~l~~~-~~~~~~~~~~~lg~~ 383 (784)
.++..++ ++|+++-. ..|..
T Consensus 100 ~~~~~~~~~~~l~~~~--~~G~~ 120 (169)
T PF06826_consen 100 IALVIGRYLFKLNPGI--AAGIL 120 (169)
T ss_pred HHHHHHHHHcCCCHHH--HHHHH
Confidence 5555555 88887554 44443
No 203
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=39.12 E-value=2.1e+02 Score=26.02 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=46.9
Q ss_pred CCCcEEEEEEeeeecCCCcchhhcccccc-CCCCccccccchhhHHHHHHHHhhHcc-CceEEEEEEEecCCCChHHHHH
Q 043446 481 RSPICVYVLHLVELTGRASAMLIVHNTRK-SGRPALNRTQAQSDHIINAFENYEQHT-GCVTVQPLTAISPYSSMHEDIC 558 (784)
Q Consensus 481 ~~~~~v~~Lhlvel~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~~~~~~-~~v~v~~~~~vs~~~~~~~~I~ 558 (784)
.-.-.|.-+|++|.++-.. .+..++.-- .+... . ...-+...+-++...+.. .++-+.+.- -++.+.+++.
T Consensus 20 gL~r~V~~v~v~e~~d~~~-~l~~gElvlttg~~~-~--~~~~~~~~~~i~~L~~~~~agL~i~~~~---~~~~iP~~~i 92 (123)
T PF07905_consen 20 GLDRPVRWVHVMEAPDPSD-WLRGGELVLTTGYAL-R--DDDEEELREFIRELAEKGAAGLGIKTGR---YLDEIPEEII 92 (123)
T ss_pred cCCCcEEEEEEeecCCHHH-hCCCCeEEEECCccc-C--CCCHHHHHHHHHHHHHCCCeEEEEeccC---ccccCCHHHH
Confidence 3445688999998875322 111111100 01111 0 001112333344444432 444444322 2247889999
Q ss_pred HHHHhcCccEEEEcccc
Q 043446 559 NLAEDKRVALIIIPFHK 575 (784)
Q Consensus 559 ~~A~~~~~dlIv~g~h~ 575 (784)
++|++.+..+|.+|++-
T Consensus 93 ~~A~~~~lPli~ip~~~ 109 (123)
T PF07905_consen 93 ELADELGLPLIEIPWEV 109 (123)
T ss_pred HHHHHcCCCEEEeCCCC
Confidence 99999999999999964
No 204
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=38.72 E-value=3.5e+02 Score=30.04 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=49.2
Q ss_pred HHhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-chhHHHH-HHHhc--chhHHHHH
Q 043446 318 VSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMP-IREGVTL-GLLMN--TKGLVEMI 393 (784)
Q Consensus 318 ~~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~-~~~~~~l-g~~m~--~rG~~~l~ 393 (784)
+...++|+-....=++.|+..+.. ... -.+..++++.++-.+++.+..+.++.. -.|.+.+ |.+.+ .-|.+-++
T Consensus 56 v~~~~vPlai~LlLl~~Dlr~i~~-~g~-~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~ 133 (378)
T PF05684_consen 56 VWTYLVPLAIPLLLLSADLRRILR-LGG-RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFV 133 (378)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHH-hhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhHHH
Confidence 344555555445557888887764 233 355566666777777887777776644 2344333 22222 24555555
Q ss_pred HHHhhccCCcCChhhHHHH
Q 043446 394 VLNVGKDQKVLDDESFAIM 412 (784)
Q Consensus 394 ~~~~~~~~~~i~~~~~~~l 412 (784)
.....++. +++.+...
T Consensus 134 Av~~al~~---~~~~~~a~ 149 (378)
T PF05684_consen 134 AVAEALGV---SDSLFAAA 149 (378)
T ss_pred HHHHHHCC---CHHHHHHH
Confidence 55444432 45555554
No 205
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=37.38 E-value=2.1e+02 Score=31.62 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.5
Q ss_pred ccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 621 ANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 621 ~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
+-....++++.+.||.|+--|+.++.+ .+.+++.+|+..
T Consensus 168 P~g~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~ 206 (371)
T TIGR00342 168 PVGTQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFN 206 (371)
T ss_pred CcCcCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeC
Confidence 344567999999999999999988755 267899999974
No 206
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=36.58 E-value=5.9e+02 Score=27.66 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=33.7
Q ss_pred HHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 107 LLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFIL 152 (784)
Q Consensus 107 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l 152 (784)
+-+..|..|..++++.+.+.+.+...+++..++++....+....++
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 3446677899999999988888888888877777765555554443
No 207
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=36.56 E-value=5.6e+02 Score=27.41 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=57.5
Q ss_pred hhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhc
Q 043446 320 GLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGK 399 (784)
Q Consensus 320 ~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~ 399 (784)
.+++-.|++.++...|+..+.....| ++..+...+......+..++.++.+..+-...++ -|..|-.+.-....+.
T Consensus 276 tv~lY~~v~vias~Ad~~~i~taP~~---i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~ 351 (384)
T COG5505 276 TVLLYLFVVVIASPADLRLIVTAPLI---ILFGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAK 351 (384)
T ss_pred HHHHHHHHHHhccchhHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhc
Confidence 55666789999999999888753333 3333344455677777889999988777555544 7778888877777777
Q ss_pred cCCcCCh
Q 043446 400 DQKVLDD 406 (784)
Q Consensus 400 ~~~~i~~ 406 (784)
+...+.+
T Consensus 352 nr~lv~~ 358 (384)
T COG5505 352 NRELVAP 358 (384)
T ss_pred Cchhcch
Confidence 6655543
No 208
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=36.27 E-value=1.2e+02 Score=32.16 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=69.1
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEcccccccc-CCcccccChhHHHHHHHhhccC--CCceEEEecCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTV-DGGMEATNPAFRMVNQNLLANA--PCSVGILVDRGL 613 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~~~~~~~~~~~~~~~vl~~a--pc~V~ilv~rg~ 613 (784)
++..|-.+...+ ..+...|++.|++.++.+|+.-+.+.... .| -..+........+++ .+||.+--|++.
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g-----~~~~~~~~~~~a~~~~~~VPV~lHLDHg~ 88 (288)
T TIGR00167 16 EGYAIPAFNINN--LETINAVLEAAAEEKSPVIIQFSNGAAKYIAG-----LGAISAMVKAMSEAYPYGVPVALHLDHGA 88 (288)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCcchhhccCC-----HHHHHHHHHHHHHhccCCCcEEEECCCCC
Confidence 344555565555 47889999999999999999977654322 22 124778888889999 899999889985
Q ss_pred CCCc-cccccCcceeEEEeccCCc-chHHHHHH---HHHHhcCCCeEEE
Q 043446 614 NGST-RLAANQVTHNIAVLFFGGP-DDREALAY---AWRMSEHPGNNLT 657 (784)
Q Consensus 614 ~~~~-~~~~~~~~~~I~v~~~gg~-~~~~al~~---a~~la~~~~~~lt 657 (784)
.... ...-...+..|. +|||. +-+|=++. +.++|+..++.+-
T Consensus 89 ~~e~i~~ai~~GftSVM--iDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 89 SEEDCAQAVKAGFSSVM--IDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred CHHHHHHHHHcCCCEEE--ecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4100 000111234443 68874 33444443 3444555555443
No 209
>PRK01658 holin-like protein; Validated
Probab=36.20 E-value=3.4e+02 Score=24.82 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccCCCh---hHHHHHHHHhhcccccCCcccccccccCccc-HHHHHHHHHHHHHHHHH
Q 043446 37 PLFILQLTLVVVTTRLLVLVLKPFRQPR---VISEIIGGVLLGPSVLGRNTAFANTIFPLRS-VMVLETMANVGLLYFLF 112 (784)
Q Consensus 37 ~~~l~~l~lil~~~~l~~~l~~rl~~P~---iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~-~~~l~~l~~igl~~llF 112 (784)
..++.|+.+++.+..+...+.+-+++|- ++|.++.=+.+. .+..+ ++.- ...--.++++++.|+=-
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~---~~~ik-------~~~v~~~a~~Ll~~m~llFVPa 73 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLS---FKILK-------LKWIELGAETLLAELPLFFIPS 73 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---hCCcC-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888777777777666653 445544322221 22221 0000 11112345555555555
Q ss_pred HHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 113 LVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFI 151 (784)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 151 (784)
..|+=-.++.+++++.+.....+.+.++.+++...+..+
T Consensus 74 ~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~ 112 (122)
T PRK01658 74 AVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQL 112 (122)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888888777777666666665554444433
No 210
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=36.17 E-value=1.5e+02 Score=32.41 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=53.5
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEcccccccc-CCc-ccc---------cChhHHHHHHHhhccCCCce
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTV-DGG-MEA---------TNPAFRMVNQNLLANAPCSV 605 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~-~~~---------~~~~~~~~~~~vl~~apc~V 605 (784)
++..|-.+-..+ ..+...+++.|++.+++.|+.-+.+.... .|. ++. ....+........+++++||
T Consensus 25 ~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPV 102 (357)
T TIGR01520 25 NNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPV 102 (357)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 344555555554 47889999999999999999988765322 221 110 01126778888999999999
Q ss_pred EEEecCCCC
Q 043446 606 GILVDRGLN 614 (784)
Q Consensus 606 ~ilv~rg~~ 614 (784)
.+=-|+|..
T Consensus 103 alHLDHg~~ 111 (357)
T TIGR01520 103 VLHTDHCAK 111 (357)
T ss_pred EEECCCCCC
Confidence 998899864
No 211
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=36.13 E-value=4.2e+02 Score=28.65 Aligned_cols=90 Identities=9% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHHHhhccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhccCCc
Q 043446 326 FFAISGLKTDISSIHGT--STWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKV 403 (784)
Q Consensus 326 fF~~~G~~~d~~~l~~~--~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~~~~~ 403 (784)
....+|++=-...-.+. ..+...+..+++.++.-+++-.+..++.|++..|+..++...+.-..+.++.+...++..-
T Consensus 33 LLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~g 112 (327)
T PF05982_consen 33 LLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQG 112 (327)
T ss_pred HHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCC
Confidence 35677776332211111 1222234444444444444445555567999999999999988888888888888888777
Q ss_pred CChhhHHHHHHH
Q 043446 404 LDDESFAIMVIV 415 (784)
Q Consensus 404 i~~~~~~~lv~~ 415 (784)
+..+-|....++
T Consensus 113 i~yeg~m~a~~a 124 (327)
T PF05982_consen 113 ISYEGYMVALLA 124 (327)
T ss_pred CCccccHHHHHH
Confidence 777766665333
No 212
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.85 E-value=1.1e+02 Score=33.28 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCC-CceEEEecCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP-CSVGILVDRGLNG 615 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap-c~V~ilv~rg~~~ 615 (784)
++..|-.+.... ..+...|++.|++.++.+|+.-+.+.....| ...+..+.+...++++ +||.+=-|++...
T Consensus 16 ~~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-----~~~~~~~~~~~a~~~~~VPValHLDHg~~~ 88 (347)
T PRK09196 16 HGYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYAG-----EPFLRHLILAAVEEYPHIPVVMHQDHGNSP 88 (347)
T ss_pred cCceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCCCH
Confidence 455555666555 4789999999999999999998776533222 2247888888888997 9999988998531
Q ss_pred Cc-cccccCcceeEEEeccCCcc--------hHHHHHH---HHHHhcCCCeEEE
Q 043446 616 ST-RLAANQVTHNIAVLFFGGPD--------DREALAY---AWRMSEHPGNNLT 657 (784)
Q Consensus 616 ~~-~~~~~~~~~~I~v~~~gg~~--------~~~al~~---a~~la~~~~~~lt 657 (784)
.. ...-...+..| -+|||.. -+|=++. +.++|...++.+-
T Consensus 89 e~i~~ai~~GftSV--MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 89 ATCQRAIQLGFTSV--MMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred HHHHHHHHcCCCEE--EecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 00 00011123344 3688843 3444433 4555666665443
No 213
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=35.52 E-value=2.5e+02 Score=27.35 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=54.2
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhH
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ 534 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~ 534 (784)
|+++++.+..+...++.++....+. .+.++.++|+-.- .. + .+++-.+.++.+.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~--~~~~v~~v~vd~g--~~-~--------------------~~~~~~~~~~~~~~ 55 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK--LKIRLIAAHVDHG--LR-P--------------------ESDEEAEFVQQFCK 55 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCC--CC-h--------------------hHHHHHHHHHHHHH
Confidence 5889999888888888888776422 2445777776421 10 0 01112223334444
Q ss_pred ccCceEEEEEEEec----C--CCChH--------HHHHHHHHhcCccEEEEcccc
Q 043446 535 HTGCVTVQPLTAIS----P--YSSMH--------EDICNLAEDKRVALIIIPFHK 575 (784)
Q Consensus 535 ~~~~v~v~~~~~vs----~--~~~~~--------~~I~~~A~~~~~dlIv~g~h~ 575 (784)
. -+++.+.+..-- + ..++. ..+.+.|++.+++.|+.|.|.
T Consensus 56 ~-~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~ 109 (189)
T TIGR02432 56 K-LNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHA 109 (189)
T ss_pred H-cCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 3 444444332210 0 01122 467778999999999999884
No 214
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=35.45 E-value=1.3e+02 Score=32.40 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=70.1
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCC-CceEEEecCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP-CSVGILVDRGLNG 615 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap-c~V~ilv~rg~~~ 615 (784)
++..|-.+...+ ..+...|++.|++.++.+|+.-+.+.....| ...+........++++ .||.+=-|++...
T Consensus 15 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g-----~~~~~~~~~~~a~~~~~VPValHLDHg~~~ 87 (307)
T PRK05835 15 EGYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEGAIKYMG-----IDMAVGMVKIMCERYPHIPVALHLDHGTTF 87 (307)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhCC-----hHHHHHHHHHHHHhcCCCeEEEECCCCCCH
Confidence 445556666555 4789999999999999999998775532222 2246778888889997 9999988998541
Q ss_pred Cc-cccccCcceeEEEeccCCc-chHHHHHH---HHHHhcCCCeEE
Q 043446 616 ST-RLAANQVTHNIAVLFFGGP-DDREALAY---AWRMSEHPGNNL 656 (784)
Q Consensus 616 ~~-~~~~~~~~~~I~v~~~gg~-~~~~al~~---a~~la~~~~~~l 656 (784)
.. ...-...+..|. +|||. +.+|=++. +.++|+..++.+
T Consensus 88 e~i~~ai~~GftSVM--~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (307)
T PRK05835 88 ESCEKAVKAGFTSVM--IDASHHAFEENLELTSKVVKMAHNAGVSV 131 (307)
T ss_pred HHHHHHHHcCCCEEE--EeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 00 000111234443 68885 33444443 445556556544
No 215
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=35.41 E-value=97 Score=34.62 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=31.0
Q ss_pred ccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 621 ANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 621 ~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
+-.+..++++.+.||-|+--|+.++.+ .+.++..+|+..
T Consensus 172 P~g~~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 172 PVGTSGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred ccCCCCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 344567899999999999999888755 267888899964
No 216
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=35.07 E-value=7.2e+02 Score=28.25 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=65.6
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHH----hhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 294 AFVFGLVIPNGPLGLTLIEKLEDFVS----GLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLM 369 (784)
Q Consensus 294 af~aGl~l~~~~~~~~l~~~l~~~~~----~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~ 369 (784)
..+.|.++.++|..+++.+|+.+.-. .+.+-.++..+.. .-+|+ +.+++.++++|-++ .+.
T Consensus 67 ilvtG~~lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~s---------~inWG--~gLV~gallArela----rr~ 131 (453)
T PF02667_consen 67 ILVTGYALASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIAS---------WINWG--FGLVVGALLARELA----RRV 131 (453)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHHH---------HHHhh--HHHHHHHHHHHHHH----Hhc
Confidence 35778888887777777777754421 2222222222221 12454 33445566666442 222
Q ss_pred hCCCchh---HHH---HHHHhcchhHHHHHHHHhhcc----CC--------cCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 043446 370 YQMPIRE---GVT---LGLLMNTKGLVEMIVLNVGKD----QK--------VLDDESFAIMVIVAVVMTGIITPIVTSIY 431 (784)
Q Consensus 370 ~~~~~~~---~~~---lg~~m~~rG~~~l~~~~~~~~----~~--------~i~~~~~~~lv~~~vv~t~i~~pl~~~l~ 431 (784)
-+.+-|- +-+ +.|-++.-|...+..++-+.. .+ .++++.|+..-+...+..+++.|++.+..
T Consensus 132 ~~vdYpllvAaaY~g~~vWh~GlSgS~pL~~At~g~~l~~~~~~~~~~~vIP~seTif~~~nli~~~~~~v~~pli~~~m 211 (453)
T PF02667_consen 132 KGVDYPLLVAAAYSGFVVWHGGLSGSAPLLVATPGHFLEKIIGGLVITGVIPTSETIFSPYNLIIVVVLLVVLPLINYLM 211 (453)
T ss_pred cCCcHHHHHHHHHHHHHHHhccccchhHHHhcCCCCcHHHHhcccccCCccCcchhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 2232221 112 223344455555555542211 12 24567777665555555677888888888
Q ss_pred ccccc
Q 043446 432 KPARR 436 (784)
Q Consensus 432 ~~~~~ 436 (784)
.|+++
T Consensus 212 ~P~~~ 216 (453)
T PF02667_consen 212 APKPE 216 (453)
T ss_pred CCCCc
Confidence 77664
No 217
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=34.58 E-value=67 Score=29.55 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=27.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCccEEEEcccccc
Q 043446 542 QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQ 577 (784)
Q Consensus 542 ~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~ 577 (784)
.-..++-|...++..|.++|++.++|+||-|..+..
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 446677788899999999999999999999987653
No 218
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.00 E-value=1.3e+02 Score=26.54 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhh-hcCCCchhHHHHHHHHHHhh
Q 043446 137 GMTLPFVIGGCFSFILHK-KNQGMNQGTFVLFLGVALSV 174 (784)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~al~lg~~ls~ 174 (784)
++++|.++|..++.++.. ++.+.......+++|++.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 567788888888988887 65443334555666666554
No 219
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=33.98 E-value=5.4e+02 Score=26.44 Aligned_cols=83 Identities=7% Similarity=-0.031 Sum_probs=56.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccc
Q 043446 542 QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAA 621 (784)
Q Consensus 542 ~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~ 621 (784)
.+++.++|.+...++..+.+.+.++|.|++|-. .+-+...+..+.+++-+ .+.||.++..... +-
T Consensus 9 ~h~~liDP~k~~~~~~~~~~~~~gtdai~vGGS--------~~vt~~~~~~~v~~ik~-~~lPvilfp~~~~------~i 73 (232)
T PRK04169 9 LHVTLLDPDKPLPDEALEAICESGTDAIIVGGS--------DGVTEENVDELVKAIKE-YDLPVILFPGNIE------GI 73 (232)
T ss_pred eEEEEECCCCCCCHHHHHHHHhcCCCEEEEcCC--------CccchHHHHHHHHHHhc-CCCCEEEeCCCcc------cc
Confidence 567889999987788778889999999999944 22223346777777665 8889888733221 11
Q ss_pred cCcceeEEEeccCCcchH
Q 043446 622 NQVTHNIAVLFFGGPDDR 639 (784)
Q Consensus 622 ~~~~~~I~v~~~gg~~~~ 639 (784)
....+-+++|..=+.++.
T Consensus 74 ~~~aDa~l~~svlNs~~~ 91 (232)
T PRK04169 74 SPGADAYLFPSVLNSRNP 91 (232)
T ss_pred CcCCCEEEEEEEecCCCc
Confidence 223677888876554443
No 220
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=33.78 E-value=1.4e+02 Score=32.49 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=53.1
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEcccccccc-CCc-ccc--------cChhHHHHHHHhhccCCCceE
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTV-DGG-MEA--------TNPAFRMVNQNLLANAPCSVG 606 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~-~~~--------~~~~~~~~~~~vl~~apc~V~ 606 (784)
.+..|-.+.... -.+...|++.|++.++..|+.-+.+.... .|. .+. +-..+........+++++||.
T Consensus 19 ~~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa 96 (350)
T PRK09197 19 NGFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVI 96 (350)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 455555666555 47889999999999999999887764322 220 000 001166778888999999999
Q ss_pred EEecCCCC
Q 043446 607 ILVDRGLN 614 (784)
Q Consensus 607 ilv~rg~~ 614 (784)
+=-|+|..
T Consensus 97 lHLDHg~~ 104 (350)
T PRK09197 97 LHTDHCAK 104 (350)
T ss_pred EECCCCCC
Confidence 98899854
No 221
>COG3371 Predicted membrane protein [Function unknown]
Probab=33.37 E-value=3e+02 Score=26.93 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=42.3
Q ss_pred ccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHH
Q 043446 59 PFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIA 134 (784)
Q Consensus 59 rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia 134 (784)
|.+-+.-.-+++.|+.+.- .|. ||.+. .-..+..+...+++|.+.+-+..+..+++.+....+.
T Consensus 73 k~~~~g~~ll~is~lfLaL--VGV--------FpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~~~ 136 (181)
T COG3371 73 KIENYGGALLIISGLFLAL--VGV--------FPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLIA 136 (181)
T ss_pred HhhhcchHHHHHHHHHHHh--eee--------CCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5666666677888887763 243 33322 3455667777888999999898888887555444333
No 222
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=32.80 E-value=1.7e+02 Score=25.40 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.4
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 628 IAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 628 I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
|+|.+.||.|+--.+..+.+... ++..+++..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~ 32 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDH 32 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcC
Confidence 57899999999999888877632 677787754
No 223
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=32.78 E-value=16 Score=38.09 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhh
Q 043446 319 SGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVG 398 (784)
Q Consensus 319 ~~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~ 398 (784)
++++=++.|..+|..+|+..+. .-+..+++-...-++-+. +++.+...++..+|+..+|.+=+.-|-.++.+.+..
T Consensus 83 ~~i~PllIFmGvGAmTDFgpll---anPktllLGaAAQ~GIF~-t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~L 158 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLL---ANPKTLLLGAAAQFGIFA-TVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKL 158 (375)
T ss_pred cCcccHHHHhccchhcccchhh---cCcHHHHhhhHHHhchHH-HHHHHHHhCCCHhhhhheeeeccCCCCceEEecccc
Q ss_pred ccC--CcCChhhHHHHHHHHHHHHHhHHHHHHhhccccccccc-cccccccCCCC
Q 043446 399 KDQ--KVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLP-YKRRTIQKSKP 450 (784)
Q Consensus 399 ~~~--~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~~~~-~~~~~i~~~~~ 450 (784)
... +.+.-..|+-+ -+.-++-||+.+.+-.+.+|..+ .|.|++.+.+.
T Consensus 159 AP~Ll~~iAvAAYSYM----ALVPiIQPpimkaLTt~~ERkIrM~qlR~Vsk~Ek 209 (375)
T COG1883 159 APELLGAIAVAAYSYM----ALVPIIQPPIMKALTTKEERKIRMTQLRTVSKREK 209 (375)
T ss_pred CHHHHHHHHHHHHHHH----HHhhhcccHHHHHhcCHHHHHhhhhccccccchhh
No 224
>COG3748 Predicted membrane protein [Function unknown]
Probab=32.53 E-value=4.4e+02 Score=28.26 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=26.5
Q ss_pred hhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHH
Q 043446 320 GLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGK 359 (784)
Q Consensus 320 ~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K 359 (784)
.+-+|..|+.+--+.++..-. ..+|.+..++.+.++..|
T Consensus 227 ylTLPVlF~MlSNHyp~~~gt-~fnWii~alv~l~gV~IR 265 (407)
T COG3748 227 YLTLPVLFTMLSNHYPLAFGT-QFNWIIAALVFLMGVLIR 265 (407)
T ss_pred eehHHHHHHHHhccCcccccC-chhHHHHHHHHHHHHHHH
Confidence 567899999888877765433 467876666665555544
No 225
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=31.71 E-value=5.1e+02 Score=29.94 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043446 241 IFCVFVVRPAICWMIRR 257 (784)
Q Consensus 241 ~~~~~v~~~~~~~l~~~ 257 (784)
....++.++++.++.++
T Consensus 472 ~~sl~vtp~l~~~~~~~ 488 (498)
T PRK05812 472 FTAITVTRALVNLLYGR 488 (498)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34456667777655543
No 226
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=31.44 E-value=7.1e+02 Score=27.05 Aligned_cols=253 Identities=12% Similarity=0.106 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCc-ccccccccCcccHHHHHHHHHHHH------HHHHHHH
Q 043446 42 QLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRN-TAFANTIFPLRSVMVLETMANVGL------LYFLFLV 114 (784)
Q Consensus 42 ~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~igl------~~llF~~ 114 (784)
++..+++...+++.-.+|---|.+.-.|=.|+++.+.-+.-. ..... ......+..+-+.|+ .++.+-+
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~----~~~~g~l~~~~~~gi~~~l~P~LIF~GI 79 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVG----GGEIGGLQPIYYFGISNGLFPPLIFMGI 79 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccc----cCCCChHHHHHHHhhhcchhhHHHHHHH
Confidence 455566666666777777778999999999999986432211 10000 001123333333332 3466778
Q ss_pred hhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 043446 115 GVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTEL 194 (784)
Q Consensus 115 Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~ 194 (784)
|--+|+.-+..+.|..+.=+..++-+ ...+..+.+++ .+. .++..+|++-..=.|..+.-. .++.
T Consensus 80 GAmtDFgpllanP~~~llGaaAQ~Gi--f~t~~~A~~lG---f~~---~eAAsIgIIGgADGPtsIf~s---~~LA---- 144 (360)
T PF03977_consen 80 GAMTDFGPLLANPKTLLLGAAAQFGI--FATFLGAILLG---FTP---KEAASIGIIGGADGPTSIFVS---SKLA---- 144 (360)
T ss_pred hHHHhhHHHHhCHHHHHHHHHHHHhH--HHHHHHHHHhC---CCH---HHhhHhhhcccCCCcHHHHHH---Hhhh----
Confidence 88999999999998754433333322 12222333332 222 445555555543222211111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHc--CCCCC-CchH
Q 043446 195 GRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWM----IRRT--PEGES-FSEF 267 (784)
Q Consensus 195 g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l----~~~~--~~~~~-~~e~ 267 (784)
-|.++-+..+-.. +..++..+-+|+++-+ .|+. ++.++ .+..
T Consensus 145 ----------p~LlgpIaVaAYs---------------------YMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~e 193 (360)
T PF03977_consen 145 ----------PHLLGPIAVAAYS---------------------YMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTE 193 (360)
T ss_pred ----------HHHHHHHHHHHHH---------------------HHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHH
Confidence 2222211111000 1111222333443332 2222 22222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccchhHH
Q 043446 268 YVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWM 346 (784)
Q Consensus 268 ~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~~~~~ 346 (784)
.+.+-+....+++.+. =.-.+.+|.+++|-.+.+....+++.+..+.-..+...-+.=..+|...+-+.+.++++..
T Consensus 194 kiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rEsgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl~ 270 (360)
T PF03977_consen 194 KIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRESGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTLK 270 (360)
T ss_pred HHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHHH
Confidence 4555555555555442 2346899999999999984444444333332222222223346788888877777655443
No 227
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=31.21 E-value=1.6e+02 Score=29.64 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=47.0
Q ss_pred EEEecCCCChHHHHHH---HHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCcccc
Q 043446 544 LTAISPYSSMHEDICN---LAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLA 620 (784)
Q Consensus 544 ~~~vs~~~~~~~~I~~---~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~ 620 (784)
++.++|.+. +++.+ .+.+.++|.|.+|.|. |. ....+..+.+.+-++.+.||.++..... +
T Consensus 2 ~~~iDP~k~--e~~~~ia~~v~~~gtDaI~VGGS~-----gv---t~~~~~~~v~~ik~~~~lPvilfp~~~~------~ 65 (205)
T TIGR01769 2 FTLIDPEKS--DEIEKIAKNAKDAGTDAIMVGGSL-----GI---VESNLDQTVKKIKKITNLPVILFPGNVN------G 65 (205)
T ss_pred ccccCCCcH--HHHHHHHHHHHhcCCCEEEEcCcC-----CC---CHHHHHHHHHHHHhhcCCCEEEECCCcc------c
Confidence 355666654 55553 5567889999998651 22 2234677777876668899998733221 1
Q ss_pred ccCcceeEEEeccCC
Q 043446 621 ANQVTHNIAVLFFGG 635 (784)
Q Consensus 621 ~~~~~~~I~v~~~gg 635 (784)
-....+.+++|..=+
T Consensus 66 i~~~aD~~~~~slln 80 (205)
T TIGR01769 66 LSRYADAVFFMSLLN 80 (205)
T ss_pred cCcCCCEEEEEEeec
Confidence 122456788877543
No 228
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=31.01 E-value=5.3e+02 Score=30.35 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=27.3
Q ss_pred HHHHHHHHHhchhhhHHHHHHHhhcCC-Cc-chhH--HHHHHHHHHHhhhhHHH
Q 043446 277 MISGFITDAIGTHSVFGAFVFGLVIPN-GP-LGLT--LIEKLEDFVSGLLLPLF 326 (784)
Q Consensus 277 l~~~~~a~~~G~~~~lgaf~aGl~l~~-~~-~~~~--l~~~l~~~~~~~~~plf 326 (784)
+..++++... .++++|+.++|++.+. .. ..+. +-+.++.+..-++.|++
T Consensus 303 ~i~g~~a~~~-~~GFlG~Ilag~lagyv~~~l~K~~~lP~~l~~l~piliiPll 355 (563)
T PRK10712 303 LIGGMLAVST-GSGFIGGIIAGFLAGYVAKLISTKLKLPQSMEALKPILIIPLI 355 (563)
T ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhccCcHHHHhcCceeehhHH
Confidence 3334444333 4788888888888876 33 2222 34445544444556655
No 229
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.98 E-value=4.9e+02 Score=27.51 Aligned_cols=178 Identities=13% Similarity=0.194 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCccEEEEcccccccc--CCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccccCcceeEEEec
Q 043446 555 EDICNLAEDKRVALIIIPFHKHQTV--DGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLF 632 (784)
Q Consensus 555 ~~I~~~A~~~~~dlIv~g~h~~~~~--~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~~~~~~~I~v~~ 632 (784)
.+..+.+++.++|.|-+-++-...- +..+...-.....+.++|.+...+||.+ | +
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v---K----------------l---- 161 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV---K----------------L---- 161 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE---E----------------e----
Confidence 3444555667899998865532111 1112222234667777777666788776 1 0
Q ss_pred cCCcchHHHHHHHHHHhcCCCeE-EEEEEeeecCCcCcccCCC---C-CCCCCcccccchhhhhhHHHHHHHHHhhccCC
Q 043446 633 FGGPDDREALAYAWRMSEHPGNN-LTVMRFIAAEEVEPAERQS---P-DQNGLTVETENDNQRQLDEEYINEFRMKIAND 707 (784)
Q Consensus 633 ~gg~~~~~al~~a~~la~~~~~~-ltv~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (784)
+++.++..++|.++.+. +++ +++......... +..+.. . ...+++ . ...+...-+++.++++.. +
T Consensus 162 --~~~~~~~~~~a~~~~~~-G~d~i~~~nt~~g~~~-~~~~~~~~~~~~~gg~s--g--~~~~~~~~~~i~~i~~~~--~ 231 (296)
T cd04740 162 --TPNVTDIVEIARAAEEA-GADGLTLINTLKGMAI-DIETRKPILGNVTGGLS--G--PAIKPIALRMVYQVYKAV--E 231 (296)
T ss_pred --CCCchhHHHHHHHHHHc-CCCEEEEECCCccccc-ccccCceeecCCcceec--C--cccchHHHHHHHHHHHhc--C
Confidence 12233566777655444 444 444432211000 000000 0 000011 0 111223446677776654 1
Q ss_pred CceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCC----CccccCcCccCCCCccccchhhh
Q 043446 708 ESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVT----SPLTDGLTDWSECPELGAIGDLL 769 (784)
Q Consensus 708 ~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~----~~~~~gl~~w~e~~elG~igd~l 769 (784)
-.+... =-+.++.+..+.++ .+.|++.+||.--.+ ..+..||.+|.+......+.|+.
T Consensus 232 ipii~~-GGI~~~~da~~~l~---~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~~~~~~ 293 (296)
T cd04740 232 IPIIGV-GGIASGEDALEFLM---AGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKSIEELV 293 (296)
T ss_pred CCEEEE-CCCCCHHHHHHHHH---cCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 222211 12556666666664 347999999985432 23557888888777666666653
No 230
>PRK01821 hypothetical protein; Provisional
Probab=30.85 E-value=4.4e+02 Score=24.51 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccCCCh---hHHHHHHHHhhcccccCCcccccccccCcccHH-HHHHHHHHHHHHHHH
Q 043446 37 PLFILQLTLVVVTTRLLVLVLKPFRQPR---VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVM-VLETMANVGLLYFLF 112 (784)
Q Consensus 37 ~~~l~~l~lil~~~~l~~~l~~rl~~P~---iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~-~l~~l~~igl~~llF 112 (784)
..++.|+.+++.+..+...+.+-+++|- ++|.++.=+.+. .+..+ +..-.+ .--.+++.++.|+=-
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~---~~~vk-------~~~v~~~a~~LL~~m~LfFVPa 78 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLA---LQILP-------AKWVKPGCSLLIRYMALLFVPI 78 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 3567788888887777777777777653 444433222221 22222 000011 112345555555555
Q ss_pred HHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 043446 113 LVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFS 149 (784)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~ 149 (784)
..|+=..++.+++++.+....-+.+.++.+++...+.
T Consensus 79 ~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~ 115 (133)
T PRK01821 79 GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSS 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777766666666666554444333
No 231
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=30.04 E-value=1e+03 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 231 WVILSGAAFVIFCVFVVRPAICWMIRR 257 (784)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~l~~~ 257 (784)
..++..++...+.+++++|...|+...
T Consensus 417 ~Pllt~li~~~l~~~viGp~~~~i~~~ 443 (631)
T PRK09765 417 YPVLGTLGAGSLMLFVVGEPVAWINNS 443 (631)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666667777777776543
No 232
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=29.77 E-value=8.6e+02 Score=27.53 Aligned_cols=132 Identities=11% Similarity=0.138 Sum_probs=68.7
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHhhhhH-HHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 043446 294 AFVFGLVIPNGPLGLTLIEKLEDFVSGLLLP-LFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQM 372 (784)
Q Consensus 294 af~aGl~l~~~~~~~~l~~~l~~~~~~~~~p-lfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~ 372 (784)
..+.|.++.++|..+++.+++..+-..=-.. ++...+++-.. .-+|+ +.+++.++++|-++- +.-+.
T Consensus 64 ilvtG~~lA~sp~v~r~l~~la~~p~t~~~ai~~v~~vs~~~s------~inWG--~gLV~gallAre~Ar----~~~~v 131 (438)
T TIGR00366 64 ILVTGYALAYSPIVYKLLKTIASLPKTPKQAVALVTFIGSIAC------WINWG--FGLVVGAIFAREVAR----RVKGS 131 (438)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCCCCceeehHHHHHHHHH------HHHHh--HHHHHHHHHHHHHHH----hccCC
Confidence 3577888888777777777775442211111 12233333211 12454 334455666665531 11123
Q ss_pred Cchh---HHH---HHHHhcchhHHHHHHHHhhc----c------CC--cCChhhHHHHHHHHHHHHHhHHHHHHhhcccc
Q 043446 373 PIRE---GVT---LGLLMNTKGLVEMIVLNVGK----D------QK--VLDDESFAIMVIVAVVMTGIITPIVTSIYKPA 434 (784)
Q Consensus 373 ~~~~---~~~---lg~~m~~rG~~~l~~~~~~~----~------~~--~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~ 434 (784)
+-|- +.+ +-|-++.-|...+..++-+. . .+ .++++.|+..-+..++..+++.|++.+...|+
T Consensus 132 dY~lliAaaY~G~~~W~~GlS~S~pl~~at~g~~l~~~~~~~~~~~vIp~s~Tif~~~nl~~~~~~~v~~~l~~~~~~P~ 211 (438)
T TIGR00366 132 DYPLLIACAYIGFLTWHGGLSGSMPLLAATPNNPLKHIFVELFGRETIPLNETIFSGYNLIITAIIIVFLPFITYMMMPK 211 (438)
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCChhhhhhhccccCCeeCCchhhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2221 112 22233445555565555431 1 11 24677787776666677778889999988886
Q ss_pred ccc
Q 043446 435 RRF 437 (784)
Q Consensus 435 ~~~ 437 (784)
++.
T Consensus 212 ~~~ 214 (438)
T TIGR00366 212 RGE 214 (438)
T ss_pred CCC
Confidence 644
No 233
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=29.74 E-value=4.5e+02 Score=26.38 Aligned_cols=50 Identities=18% Similarity=-0.031 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEcc
Q 043446 522 SDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPF 573 (784)
Q Consensus 522 ~~~i~~a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~ 573 (784)
..++.+.++...++ .+.++.....-+. .+-..+.++.....++|-+|+..
T Consensus 14 ~~~~~~~~~~~a~~-~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgvi~~~ 63 (267)
T cd01536 14 WQAMNKGAEAAAKE-LGVELIVLDAQND-VSKQIQQIEDLIAQGVDGIIISP 63 (267)
T ss_pred HHHHHHHHHHHHHh-cCceEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEeC
Confidence 45677777766665 5655544433221 11123445545566899888753
No 234
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=29.70 E-value=5.4e+02 Score=25.13 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHc
Q 043446 239 FVIFCVFVVRPAIC--WMIRRT 258 (784)
Q Consensus 239 ~~~~~~~v~~~~~~--~l~~~~ 258 (784)
.-+..+...|.... +..++.
T Consensus 136 lPl~lG~l~r~~~p~~~~~~~~ 157 (187)
T PF01758_consen 136 LPLLLGMLLRKYLPREKFARRL 157 (187)
T ss_dssp HHHHHHHHHHHHHG-GGG-HHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHH
Confidence 33444555566655 554443
No 235
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=29.60 E-value=1.2e+02 Score=28.94 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=25.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
||++.|.||+|+...|.++.+...+. .++++..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dt 33 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDT 33 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEec
Confidence 58899999999999999999988874 5666643
No 236
>COG2035 Predicted membrane protein [Function unknown]
Probab=29.40 E-value=6.9e+02 Score=26.29 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhc
Q 043446 34 YSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLG 76 (784)
Q Consensus 34 ~~l~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilG 76 (784)
+-.|+..-.+..+..+++++.++.+. .|.++-...+|+++|
T Consensus 57 fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~ 97 (276)
T COG2035 57 FLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILG 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHH
Confidence 44566677777788888888888887 788888899999998
No 237
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=29.25 E-value=4.6e+02 Score=24.23 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccCCCh---hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHH
Q 043446 36 LPLFILQLTLVVVTTRLLVLVLKPFRQPR---VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLF 112 (784)
Q Consensus 36 l~~~l~~l~lil~~~~l~~~l~~rl~~P~---iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF 112 (784)
...++.|+++++.+..+..++.+-+++|- ++|.++.=..+. ++.++. +++ ....-..+++.++.|+=-
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~---~~iv~l--~wv----~~~a~~Ll~~m~llFVPa 74 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLA---LKIVKL--EWV----ERGATFLLRNMALLFVPA 74 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH---hCCccH--HHH----HHHHHHHHHHHHHHHhcc
Confidence 34678899999998888888888777764 455544333332 333320 000 011223344555444444
Q ss_pred HHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 113 LVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFIL 152 (784)
Q Consensus 113 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l 152 (784)
..|+=-..+.++.++.+.+...+.+.++.+.+...+...+
T Consensus 75 ~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l 114 (128)
T COG1380 75 GVGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLL 114 (128)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566557777788887777777776666655544444433
No 238
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=29.07 E-value=7.7e+02 Score=26.71 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=38.1
Q ss_pred HHhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHHHHHH---hcchhHHHHHHHHhh
Q 043446 328 AISGLKTDISSIHGT-STWMITLLVIILACAGKIAGTLLVSLMY-QMPIREGVTLGLL---MNTKGLVEMIVLNVG 398 (784)
Q Consensus 328 ~~~G~~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~l~~~~~-~~~~~~~~~lg~~---m~~rG~~~l~~~~~~ 398 (784)
...|++++++++.+. ..+....+..+.-++..++.++..++.+ +.+.. +.+|+. .+|-|..+.+....+
T Consensus 54 f~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 54 YPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred HHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 344566766666431 2344455555556666777777777654 65533 555543 355565555555444
No 239
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=28.87 E-value=7.2e+02 Score=27.85 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=72.3
Q ss_pred EEEEecCCC-ChHHHHHHHHHhcCccEEEEcccccccc-CCcccccChhHHHHHHHhhccCCCce-EEEecCCCCCCccc
Q 043446 543 PLTAISPYS-SMHEDICNLAEDKRVALIIIPFHKHQTV-DGGMEATNPAFRMVNQNLLANAPCSV-GILVDRGLNGSTRL 619 (784)
Q Consensus 543 ~~~~vs~~~-~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~~~~~~~~~~~~~~~vl~~apc~V-~ilv~rg~~~~~~~ 619 (784)
+...+.|.+ .+-+.-++.|++.+..++|-.+..+-.. +|..+-+...|.....++.++..+|. -++..+...+
T Consensus 14 gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlG---- 89 (420)
T TIGR02810 14 GIYSVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLG---- 89 (420)
T ss_pred eEEEECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCC----
Confidence 456666333 3455556778999999999999877443 34444455678888899999988886 3332222221
Q ss_pred cccCcceeEEEeccCCcchHHHHHHHHHHhcCC-CeEEEEEEeee
Q 043446 620 AANQVTHNIAVLFFGGPDDREALAYAWRMSEHP-GNNLTVMRFIA 663 (784)
Q Consensus 620 ~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~-~~~ltv~~~~~ 663 (784)
..+++ ....+||.+.|.+|.+.. .+--+.+|...
T Consensus 90 --Pn~Wq--------~lpa~eAM~~A~~li~ayV~AGF~kIHLD~ 124 (420)
T TIGR02810 90 --PNPWQ--------HLPADEAMAKAAALVDAYVEAGFTKIHLDA 124 (420)
T ss_pred --Ccccc--------CCCHHHHHHHHHHHHHHHHHcCCceEEecC
Confidence 11233 568899999999998774 67778888864
No 240
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=28.75 E-value=2.1e+02 Score=30.32 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=66.9
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCC-CceEEEecCCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP-CSVGILVDRGLNG 615 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap-c~V~ilv~rg~~~ 615 (784)
++..|-.+...+ ..+.+.+++.|++.++..|+.-+.+.....+ +...+......+.++++ .||.+=-|++...
T Consensus 14 ~~yav~Afn~~n--~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~ 87 (282)
T TIGR01859 14 EGYAVGAFNFNN--LEWTQAILEAAEEENSPVIIQVSEGAIKYMG----GYKMAVAMVKTLIERMSIVPVALHLDHGSSY 87 (282)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHhCCCEEEEcCcchhhccC----cHHHHHHHHHHHHHHCCCCeEEEECCCCCCH
Confidence 344555555555 4789999999999999999998776533222 12347788888999999 8988866776421
Q ss_pred Cc-cccccCcceeEEEeccCCcc-hHHHHHHHHHH---hcCCCeE
Q 043446 616 ST-RLAANQVTHNIAVLFFGGPD-DREALAYAWRM---SEHPGNN 655 (784)
Q Consensus 616 ~~-~~~~~~~~~~I~v~~~gg~~-~~~al~~a~~l---a~~~~~~ 655 (784)
.. ...-...+ +. |-+|++.. .+|=++.+.++ ++..++.
T Consensus 88 e~i~~ai~~Gf-~s-Vmid~s~l~~~eni~~t~~v~~~a~~~gv~ 130 (282)
T TIGR01859 88 ESCIKAIKAGF-SS-VMIDGSHLPFEENLALTKKVVEIAHAKGVS 130 (282)
T ss_pred HHHHHHHHcCC-CE-EEECCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 00 00001112 22 34677643 34455555544 4555653
No 241
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=28.54 E-value=1.9e+02 Score=31.83 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=20.0
Q ss_pred hhhHHHHHHHhhcCC-Cc-chh-HHHHHHHHHHHhhhhHHH
Q 043446 289 HSVFGAFVFGLVIPN-GP-LGL-TLIEKLEDFVSGLLLPLF 326 (784)
Q Consensus 289 ~~~lgaf~aGl~l~~-~~-~~~-~l~~~l~~~~~~~~~plf 326 (784)
++++|+.++|++..- .. .++ ++.+.++.+..-++.|++
T Consensus 101 ~GFlGaii~G~laGy~v~~lkki~lpk~l~~~~piliiP~l 141 (359)
T PRK10478 101 AGFFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIV 141 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCchhhHhhcceeeeHHH
Confidence 466666666655443 11 111 345566666655666654
No 242
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=28.37 E-value=2.9e+02 Score=26.36 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=25.1
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFI 662 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~ 662 (784)
++++.+.||.|+-.++.++.+. +.++..+++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 5889999999999999888653 3467777775
No 243
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=28.26 E-value=5.5e+02 Score=24.74 Aligned_cols=48 Identities=25% Similarity=0.325 Sum_probs=25.7
Q ss_pred hhHHHHHHHHhhcccc---cCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhh
Q 043446 64 RVISEIIGGVLLGPSV---LGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGV 116 (784)
Q Consensus 64 ~iv~~ilaGiilGP~~---lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gl 116 (784)
.-+.-+++|+++||.. .+...+....+++.. ..+.-.|.++.-|.+|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g-----~~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLG-----TVLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCC-----chHHHHHHHHHHHHHHH
Confidence 4678899999999952 122222222222211 11122356666777777
No 244
>PRK01658 holin-like protein; Validated
Probab=27.94 E-value=4.7e+02 Score=23.90 Aligned_cols=45 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred hHHHHH--HhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 323 LPLFFA--ISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSL 368 (784)
Q Consensus 323 ~plfF~--~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~ 368 (784)
+|+||+ .+|.--..+.+.+ +.|...+.+++..++.=...++...+
T Consensus 66 m~llFVPa~VGi~~~~~ll~~-~~~~il~~ivvsT~l~l~vtg~~~~~ 112 (122)
T PRK01658 66 LPLFFIPSAVGVMNYGDFLSS-KGISLFLVVVISTFVVMIVTGYLTQL 112 (122)
T ss_pred HHHHHHHhhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567776 4454444555543 33443333333333333333333333
No 245
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=27.02 E-value=7.7e+02 Score=26.08 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhc--cHHHHHHHHHhcCccCChhHHHHH
Q 043446 122 AIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVT--AFPVLARILAELKLINTELGRIAM 199 (784)
Q Consensus 122 ~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~T--s~~vv~~il~el~~~~s~~g~l~l 199 (784)
.+.+....++.+++.+.++..+++...+|.+.++..........+++...+-+. -..-...+++++|+.|+..|-++.
T Consensus 70 ~f~~~~~NSliva~~~t~l~i~~~~laaYalar~~f~g~~~~~~~~l~~lm~P~~v~~iPl~~~~~~lgl~nt~~glil~ 149 (281)
T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILP 149 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 566777888999999999999999999998877322221112222222212111 111133457889999987775554
Q ss_pred HHH
Q 043446 200 SSA 202 (784)
Q Consensus 200 ~~a 202 (784)
..+
T Consensus 150 ~~~ 152 (281)
T COG0395 150 YLA 152 (281)
T ss_pred HHH
Confidence 443
No 246
>PRK14561 hypothetical protein; Provisional
Probab=26.99 E-value=3.3e+02 Score=26.95 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=22.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFI 662 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~ 662 (784)
+|+|.+.||.|+--.+..+.+. .+++.+++.
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVN 32 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEe
Confidence 6899999999999888766544 234555554
No 247
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=26.95 E-value=3.6e+02 Score=29.76 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCcccccChhHHHHHHHhhccCCCc--eEEEecCCCCCCccccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEE
Q 043446 580 DGGMEATNPAFRMVNQNLLANAPCS--VGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLT 657 (784)
Q Consensus 580 ~~~~~~~~~~~~~~~~~vl~~apc~--V~ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~lt 657 (784)
+|.+|..-.....+.+.|-+.-+.. |++ |-.. . .. ...+|.+-+|++++|..|.+... +-
T Consensus 192 GGSlENR~Rf~~EVv~aVr~~vg~~~~vg~---Rls~-------~----d~--~~~~g~~~~e~~~la~~L~~~G~--~d 253 (363)
T COG1902 192 GGSLENRARFLLEVVDAVREAVGADFPVGV---RLSP-------D----DF--FDGGGLTIEEAVELAKALEEAGL--VD 253 (363)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCceEEE---EECc-------c----cc--CCCCCCCHHHHHHHHHHHHhcCC--cc
Confidence 3444444445778888888776664 554 3210 0 00 22338899999999999998754 55
Q ss_pred EEEeee
Q 043446 658 VMRFIA 663 (784)
Q Consensus 658 v~~~~~ 663 (784)
.+|+..
T Consensus 254 ~i~vs~ 259 (363)
T COG1902 254 YIHVSE 259 (363)
T ss_pred EEEeec
Confidence 566654
No 248
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=26.79 E-value=8.6e+02 Score=27.34 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=72.5
Q ss_pred EEEEecCCC-ChHHHHHHHHHhcCccEEEEcccccccc-CCcccccChhHHHHHHHhhccCCCce-EEEecCCCCCCccc
Q 043446 543 PLTAISPYS-SMHEDICNLAEDKRVALIIIPFHKHQTV-DGGMEATNPAFRMVNQNLLANAPCSV-GILVDRGLNGSTRL 619 (784)
Q Consensus 543 ~~~~vs~~~-~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~~~~~~~~~~~~~~~vl~~apc~V-~ilv~rg~~~~~~~ 619 (784)
+...+.|.+ .+-+.-++.|++.+..++|-.+..+-.. +|..+-+-..|.....++.++..+|. -++-.+...+
T Consensus 18 gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLG---- 93 (426)
T PRK15458 18 GIYAVCSAHPLVLEAAIRYALANDSPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLG---- 93 (426)
T ss_pred eEEEecCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCC----
Confidence 556666333 3445556678999999999999877443 34544455678899999999988886 3332222221
Q ss_pred cccCcceeEEEeccCCcchHHHHHHHHHHhcCC-CeEEEEEEeee
Q 043446 620 AANQVTHNIAVLFFGGPDDREALAYAWRMSEHP-GNNLTVMRFIA 663 (784)
Q Consensus 620 ~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~-~~~ltv~~~~~ 663 (784)
..+++ ....+||.+.|.+|.+.. .+--+.+|...
T Consensus 94 --Pn~Wq--------~lpa~eAM~~A~~li~ayV~AGF~kIHLD~ 128 (426)
T PRK15458 94 --PNRWQ--------NLPAAQAMANADDLIKSYVAAGFKKIHLDC 128 (426)
T ss_pred --Ccccc--------CCCHHHHHHHHHHHHHHHHHcCCceEEecC
Confidence 11233 567899999999998774 67778888864
No 249
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=26.66 E-value=1.5e+02 Score=27.80 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCC
Q 043446 553 MHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGL 613 (784)
Q Consensus 553 ~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~ 613 (784)
..+.|.+++++++++.||+|...+. +|...........+.+++-++.++||-. +|..+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~~v~~-~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNM--DGTEGPRTERARKFANRLEGRFGLPVVL-VDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCC--CCCcCHHHHHHHHHHHHHHHHhCCCEEE-EcCCc
Confidence 4688999999999999999987653 4543333345777888887777889777 56644
No 250
>PRK01821 hypothetical protein; Provisional
Probab=26.10 E-value=5.4e+02 Score=23.96 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=20.1
Q ss_pred hHHHHH--HhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 323 LPLFFA--ISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSL 368 (784)
Q Consensus 323 ~plfF~--~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~ 368 (784)
+|+||+ .+|.--..+.+.+ +.|.+.+++++..+++=....+...+
T Consensus 71 m~LfFVPa~VGim~~~~ll~~-~~~~il~~ivvST~lvl~vtg~~~~~ 117 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLLRA-QFGPIVVSCIVSTLVVLLVVGWSSHY 117 (133)
T ss_pred HHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567775 4555444555553 33443344433333333333333333
No 251
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=26.06 E-value=7.5e+02 Score=27.70 Aligned_cols=107 Identities=9% Similarity=0.058 Sum_probs=72.0
Q ss_pred EEEEecCCC-ChHHHHHHHHHhcCccEEEEcccccccc-CCcccccChhHHHHHHHhhccCCCce-EEEecCCCCCCccc
Q 043446 543 PLTAISPYS-SMHEDICNLAEDKRVALIIIPFHKHQTV-DGGMEATNPAFRMVNQNLLANAPCSV-GILVDRGLNGSTRL 619 (784)
Q Consensus 543 ~~~~vs~~~-~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~~~~~~~~~~~~~~~vl~~apc~V-~ilv~rg~~~~~~~ 619 (784)
...++.|.+ .+-+.-++.|++.+..++|-.+..+-.. +|..+-+-..|.....++.++..+|. -++..+...+
T Consensus 15 Gi~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlG---- 90 (421)
T PRK15052 15 GICSVCSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLG---- 90 (421)
T ss_pred ceeeECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCC----
Confidence 445565332 3455556778999999999999877443 34444455678888999999988886 3333232221
Q ss_pred cccCcceeEEEeccCCcchHHHHHHHHHHhcCC-CeEEEEEEeee
Q 043446 620 AANQVTHNIAVLFFGGPDDREALAYAWRMSEHP-GNNLTVMRFIA 663 (784)
Q Consensus 620 ~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~-~~~ltv~~~~~ 663 (784)
..++++. ..+||.+.|.+|.+.. .+--+.+|...
T Consensus 91 --Pn~Wq~~--------pa~eAM~~A~~li~ayV~AGF~kIHLD~ 125 (421)
T PRK15052 91 --PNCWQQE--------PADAAMEKSVELVKAYVRAGFSKIHLDA 125 (421)
T ss_pred --CccccCC--------CHHHHHHHHHHHHHHHHHcCCceEEecC
Confidence 1123332 7899999999998774 67778888864
No 252
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.03 E-value=2e+02 Score=31.25 Aligned_cols=75 Identities=7% Similarity=0.023 Sum_probs=52.6
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccc-cccccCCc-c---------cccChhHHHHHHHhhccCCCce
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFH-KHQTVDGG-M---------EATNPAFRMVNQNLLANAPCSV 605 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h-~~~~~~~~-~---------~~~~~~~~~~~~~vl~~apc~V 605 (784)
++..|-.+...+ ..+...+++.|++.+++.|+.-+. +.....|. . ..+-..+........+++.+||
T Consensus 11 ~~yAV~AfN~~n--~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV 88 (340)
T cd00453 11 NNFALPAVNCVG--TDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPV 88 (340)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 344455555554 478899999999999999999877 33222220 0 0012347778888999999999
Q ss_pred EEEecCCC
Q 043446 606 GILVDRGL 613 (784)
Q Consensus 606 ~ilv~rg~ 613 (784)
.+=-|++.
T Consensus 89 ~lHLDH~~ 96 (340)
T cd00453 89 ILHTDHCA 96 (340)
T ss_pred EEEcCCCC
Confidence 99889986
No 253
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.80 E-value=3.7e+02 Score=29.69 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhHHHHHHhhcccccc
Q 043446 313 KLEDFVSGLLLPLFFAISGLKTDIS 337 (784)
Q Consensus 313 ~l~~~~~~~~~plfF~~~G~~~d~~ 337 (784)
.++...++.++.+||..+|+.+.-+
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE 79 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKRE 79 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556678999999999999998744
No 254
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.49 E-value=7.9e+02 Score=27.73 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.6
Q ss_pred HHHHHHHhhhhHHHHHHhhcccccc
Q 043446 313 KLEDFVSGLLLPLFFAISGLKTDIS 337 (784)
Q Consensus 313 ~l~~~~~~~~~plfF~~~G~~~d~~ 337 (784)
.+...+++.++.+||..+|+.+.-+
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE 85 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKRE 85 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHH
Confidence 4556678999999999999999643
No 255
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=25.49 E-value=9.6e+02 Score=26.65 Aligned_cols=24 Identities=25% Similarity=0.728 Sum_probs=15.8
Q ss_pred HHHHhHcccCCChhHHHHHHHHhh
Q 043446 52 LLVLVLKPFRQPRVISEIIGGVLL 75 (784)
Q Consensus 52 l~~~l~~rl~~P~iv~~ilaGiil 75 (784)
+..++.++.++|.-+.-+++.+++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 344666667788777776666554
No 256
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=25.36 E-value=3.6e+02 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=26.9
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEee
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLV 492 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlv 492 (784)
|+++++.+..+...++.++...... .+..+.++|+-
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~--~~~~v~~v~id 36 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR--LGLRLVAVHVD 36 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCcEEEEEec
Confidence 5788999888888888888776532 24567888874
No 257
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.27 E-value=3.4e+02 Score=29.18 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=47.6
Q ss_pred hhHHHHHHHhhccCCCceEEEecCCCCCCccccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 588 PAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 588 ~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
..++.+.+. +++-.+ |+++.|+.++ ....+.|||+|-+ -.......+||+..++.+.-++-..
T Consensus 182 ~~ir~li~~-Lk~G~~-v~~lpDqd~~---------~~~~vfvpFFg~~--a~T~t~~~~LA~~~~a~vip~~~~r 244 (308)
T COG1560 182 EGIRQLIKA-LKQGEA-VGYLPDQDYG---------PGESVFVPFFGVP--AATTTGPAKLARLTGAAVVPVFPVR 244 (308)
T ss_pred hhHHHHHHH-HhcCCe-EEEecCcccC---------CCCCeEeccCCCc--ccccchHHHHHHHhCCCEEEEEEEE
Confidence 557778766 555554 6888888765 3456899999888 5556778899999999988888765
No 258
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=25.13 E-value=54 Score=34.89 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=66.6
Q ss_pred ceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCc
Q 043446 538 CVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGST 617 (784)
Q Consensus 538 ~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~ 617 (784)
+-.|-.+...+ ..+...+++.|++.+...|+.-+.+....-| -..+.....+..+++++||.+=-|++.....
T Consensus 16 ~yAV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~-----~~~~~~~~~~~a~~~~vPValHLDH~~~~e~ 88 (287)
T PF01116_consen 16 GYAVPAFNVYN--LETARAVIEAAEELNSPVILQISPSEVKYMG-----LEYLAAMVKAAAEEASVPVALHLDHGKDFED 88 (287)
T ss_dssp T-BEEEEE-SS--HHHHHHHHHHHHHTTS-EEEEEEHHHHHHHH-----HHHHHHHHHHHHHHSTSEEEEEEEEE-SHHH
T ss_pred CCeEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcchhhhhhhh-----HHHHHHHHHHHHHHcCCCEEeecccCCCHHH
Confidence 44445555554 4789999999999999999998775432211 2347788899999999999998899854100
Q ss_pred -cccccCcceeEEEeccCCcch-HHHH---HHHHHHhcCCCeEEE
Q 043446 618 -RLAANQVTHNIAVLFFGGPDD-REAL---AYAWRMSEHPGNNLT 657 (784)
Q Consensus 618 -~~~~~~~~~~I~v~~~gg~~~-~~al---~~a~~la~~~~~~lt 657 (784)
...-...+..| -+|||..+ +|=+ +-+.++|+..++.+-
T Consensus 89 i~~ai~~GftSV--M~DgS~l~~eeNi~~T~~vv~~ah~~gv~VE 131 (287)
T PF01116_consen 89 IKRAIDAGFTSV--MIDGSALPFEENIAITREVVEYAHAYGVSVE 131 (287)
T ss_dssp HHHHHHHTSSEE--EEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHhCcccc--cccCCcCCHHHHHHHHHHHHHhhhhhCCEEE
Confidence 00011134445 36888443 3333 335566777775544
No 259
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=24.93 E-value=1.9e+02 Score=33.68 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=36.7
Q ss_pred hhhhHHHHHHhhccccccccccchhHHHHHHHH---------HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHH
Q 043446 320 GLLLPLFFAISGLKTDISSIHGTSTWMITLLVI---------ILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLV 390 (784)
Q Consensus 320 ~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~---------~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~ 390 (784)
.+++|-.-.-.|.+++-..+.. ..+-+.... ++....|+.+. .....+++++|++.+|.+.+.---+
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~--n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPV 178 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFR--NIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPV 178 (575)
T ss_pred HHhhchhhhcccceechhhhhh--hhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCch
Confidence 3445554456788887666553 222111111 12222222222 2234578999999999987765544
Q ss_pred HH
Q 043446 391 EM 392 (784)
Q Consensus 391 ~l 392 (784)
..
T Consensus 179 tv 180 (575)
T KOG1965|consen 179 TV 180 (575)
T ss_pred HH
Confidence 44
No 260
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.86 E-value=5.7e+02 Score=23.78 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=58.6
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCC-CC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGL-NG 615 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~-~~ 615 (784)
.+.+|...-. ....+++.+.|.+.++|+|.+.+... .....+..+.+++-+.-+-.+-|++--.. ..
T Consensus 30 ~G~eVi~LG~----~vp~e~i~~~a~~~~~d~V~lS~~~~--------~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~ 97 (137)
T PRK02261 30 AGFEVINLGV----MTSQEEFIDAAIETDADAILVSSLYG--------HGEIDCRGLREKCIEAGLGDILLYVGGNLVVG 97 (137)
T ss_pred CCCEEEECCC----CCCHHHHHHHHHHcCCCEEEEcCccc--------cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCC
Confidence 5666554332 25679999999999999999976532 22234677777765551212333322211 01
Q ss_pred Ccccc---ccCcceeEEEeccCCcchHHHHHHHHHHhcC
Q 043446 616 STRLA---ANQVTHNIAVLFFGGPDDREALAYAWRMSEH 651 (784)
Q Consensus 616 ~~~~~---~~~~~~~I~v~~~gg~~~~~al~~a~~la~~ 651 (784)
.+.+. +.....-+-..|.+|.+.++.+.+..+-+++
T Consensus 98 ~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 98 KHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred ccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhcc
Confidence 00000 0001112456688888999999888776543
No 261
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=24.78 E-value=1e+03 Score=26.71 Aligned_cols=34 Identities=12% Similarity=0.325 Sum_probs=23.5
Q ss_pred hhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 043446 397 VGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIY 431 (784)
Q Consensus 397 ~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~ 431 (784)
...+.| +|+-.|.++++.....+.++||.--.+|
T Consensus 346 ~~~~~G-idpi~~g~~~~~~~~ig~iTPPvgl~lf 379 (416)
T PF06808_consen 346 IAQALG-IDPIHFGVFMFYNAEIGLITPPVGLNLF 379 (416)
T ss_pred HHHHhC-cchhhHHHHHHHHHHhcCCCCCccHHHH
Confidence 333443 6677788887777777888888766555
No 262
>PRK04148 hypothetical protein; Provisional
Probab=24.77 E-value=1.1e+02 Score=28.60 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=29.9
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccEEEEcccccc
Q 043446 543 PLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQ 577 (784)
Q Consensus 543 ~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~ 577 (784)
-..++-|..+++..|.++|++.++|++|-|..+..
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 34566688899999999999999999999988653
No 263
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=24.76 E-value=5.3e+02 Score=26.88 Aligned_cols=75 Identities=9% Similarity=-0.007 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccC
Q 043446 522 SDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANA 601 (784)
Q Consensus 522 ~~~i~~a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~a 601 (784)
..++.+.+++..++ .+..+.....-. ..+......+...++++|-|++..... . ..... -+.+++.
T Consensus 41 ~~~~~~~i~~~~~~-~G~~~~~~~~~~-d~~~~~~~~~~l~~~~~dgiii~~~~~----~-------~~~~~-l~~~~~~ 106 (295)
T PRK10653 41 FVSLKDGAQKEADK-LGYNLVVLDSQN-NPAKELANVQDLTVRGTKILLINPTDS----D-------AVGNA-VKMANQA 106 (295)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEcCCCh----H-------HHHHH-HHHHHHC
Confidence 35566666666655 565554332211 112334455556778899666653311 0 01111 2456667
Q ss_pred CCceEEEecC
Q 043446 602 PCSVGILVDR 611 (784)
Q Consensus 602 pc~V~ilv~r 611 (784)
++|+.. +++
T Consensus 107 ~ipvV~-~~~ 115 (295)
T PRK10653 107 NIPVIT-LDR 115 (295)
T ss_pred CCCEEE-Ecc
Confidence 888877 454
No 264
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.75 E-value=2.6e+02 Score=29.66 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=51.5
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEcccccccc-CCcccccChhHHHHHHHhhccCC--CceEEEecCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTV-DGGMEATNPAFRMVNQNLLANAP--CSVGILVDRGL 613 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~-~~~~~~~~~~~~~~~~~vl~~ap--c~V~ilv~rg~ 613 (784)
++..|-.+...+ ..+...+++.|++.++.+|+.-+.+.... .| -..+....+...+++. .||.+=-|+|.
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~VPV~lHLDHg~ 88 (285)
T PRK07709 16 GKYAVGQFNMNN--LEWTQAILAAAEEEKSPVILGVSEGAARHMTG-----FKTVVAMVKALIEEMNITVPVAIHLDHGS 88 (285)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhcCC-----HHHHHHHHHHHHHHcCCCCcEEEECCCCC
Confidence 445555665555 47889999999999999999987754332 22 1246778888888876 68888778885
Q ss_pred C
Q 043446 614 N 614 (784)
Q Consensus 614 ~ 614 (784)
.
T Consensus 89 ~ 89 (285)
T PRK07709 89 S 89 (285)
T ss_pred C
Confidence 3
No 265
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=23.58 E-value=2.9e+02 Score=25.48 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCC
Q 043446 551 SSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGL 613 (784)
Q Consensus 551 ~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~ 613 (784)
....+.+.++.++.+++.||+|...+. +|.........+.+.+++-++-+.||.. +|..+
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~~--dG~~~~~a~~v~~f~~~L~~~~~~~v~~-~DEr~ 93 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLNM--DGTEGPLTERAQKFANRLEGRFGVPVVL-WDERL 93 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCCC--CcCcCHHHHHHHHHHHHHHHHhCCCEEE-EcCCc
Confidence 345688999999999999999987653 4543333344677788877777889887 55543
No 266
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.90 E-value=9.3e+02 Score=25.57 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=24.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 190 INTELGRIAMSSALINDMCAWVLLAFAIA 218 (784)
Q Consensus 190 ~~s~~g~l~l~~a~i~D~~~~~ll~~~~~ 218 (784)
-+.+.|+.+.-.|..|..++++++.+.++
T Consensus 213 ~dp~~g~~aklrS~hN~ylTlPvLf~MiS 241 (300)
T PF06181_consen 213 PDPAAGKRAKLRSRHNNYLTLPVLFLMIS 241 (300)
T ss_pred CCchhHHHHHHHhhhcceeHHHHHHHHHh
Confidence 56788999999999999999998876653
No 267
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=22.52 E-value=9e+02 Score=25.26 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhc
Q 043446 31 PLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLG 76 (784)
Q Consensus 31 ~l~~~l~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilG 76 (784)
.+.+-+|+.+-...-+++.++++.++++. .|..+-....|+++|
T Consensus 53 ~~~fL~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlg 96 (257)
T PF04018_consen 53 NLKFLLPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILG 96 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 34456667777777888888888888875 567788888888888
No 268
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=22.50 E-value=3.1e+02 Score=29.14 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=67.1
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCC--CceEEEecCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAP--CSVGILVDRGLN 614 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~ap--c~V~ilv~rg~~ 614 (784)
++..|-.+...+ ..+...+++.|++.++..|+.-+.+.....+ +-..+....+...++++ .||.+=-|+|..
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~ 89 (286)
T PRK08610 16 NGYAVGQYNLNN--LEFTQAILEASQEENAPVILGVSEGAARYMS----GFYTVVKMVEGLMHDLNITIPVAIHLDHGSS 89 (286)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhcC----cHHHHHHHHHHHHHHcCCCCCEEEECCCCCC
Confidence 344445555554 4788999999999999999998776533211 11237778888888888 689988888853
Q ss_pred CC-ccccccCcceeEEEeccCCcc-hHHHHHH---HHHHhcCCCeEE
Q 043446 615 GS-TRLAANQVTHNIAVLFFGGPD-DREALAY---AWRMSEHPGNNL 656 (784)
Q Consensus 615 ~~-~~~~~~~~~~~I~v~~~gg~~-~~~al~~---a~~la~~~~~~l 656 (784)
.. ....-...+..|. +|||.. .+|=++. +.++|+..++.+
T Consensus 90 ~e~i~~ai~~GftSVM--~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 134 (286)
T PRK08610 90 FEKCKEAIDAGFTSVM--IDASHSPFEENVATTKKVVEYAHEKGVSV 134 (286)
T ss_pred HHHHHHHHHcCCCEEE--EeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 10 0000111233443 688743 2333333 445555555544
No 269
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.45 E-value=2.6e+02 Score=29.88 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=68.0
Q ss_pred CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccC--CCceEEEecCCCC
Q 043446 537 GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANA--PCSVGILVDRGLN 614 (784)
Q Consensus 537 ~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~a--pc~V~ilv~rg~~ 614 (784)
++..|-.+...+ ..+...+++.|++.++..|+.-+.+.....+ ....+....+...+++ +.||.+=-|+| .
T Consensus 16 ~~yav~AfN~~n--~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~----~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~ 88 (293)
T PRK07315 16 NGYAVGGFNTNN--LEWTQAILRAAEAKKAPVLIQTSMGAAKYMG----GYKVCKNLIENLVESMGITVPVAIHLDHG-H 88 (293)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhcC----cHHHHHHHHHHHHHHcCCCCcEEEECCCC-C
Confidence 344555665555 4788999999999999999998775432211 0123677777888888 66999888888 4
Q ss_pred CCccccccCcceeEEEeccCC-cchHHHHHHH---HHHhcCCCeEE
Q 043446 615 GSTRLAANQVTHNIAVLFFGG-PDDREALAYA---WRMSEHPGNNL 656 (784)
Q Consensus 615 ~~~~~~~~~~~~~I~v~~~gg-~~~~~al~~a---~~la~~~~~~l 656 (784)
...--..-....+.+ -+||+ .+.+|=++.+ .++|+..++.+
T Consensus 89 ~~~i~~ai~~GftSV-m~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 89 YEDALECIEVGYTSI-MFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred HHHHHHHHHcCCCEE-EEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 100000011111222 36775 4455556555 45566667766
No 270
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=22.37 E-value=4.1e+02 Score=25.60 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=28.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAA 664 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~ 664 (784)
++++.+.||.|+--++.++.+. +.+++.+++...
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 4899999999999999888762 678889998753
No 271
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.20 E-value=1e+03 Score=25.70 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCccCChh
Q 043446 178 PVLARILAELKLINTEL 194 (784)
Q Consensus 178 ~vv~~il~el~~~~s~~ 194 (784)
|++.++.++.|+-+++.
T Consensus 118 Pi~~~~~~~~~i~~~~~ 134 (351)
T PF03600_consen 118 PIVLSLARKLGIPPSPL 134 (351)
T ss_pred HHHHHHHHHcCCChHHH
Confidence 78888888888544443
No 272
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=21.47 E-value=84 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.441 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHhcCccEEEEcccc
Q 043446 552 SMHEDICNLAEDKRVALIIIPFHK 575 (784)
Q Consensus 552 ~~~~~I~~~A~~~~~dlIv~g~h~ 575 (784)
+=++++++.|++++.|++|+|.-.
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCHHHHHHHHHHcCCCEEEECChH
Confidence 457899999999999999999653
No 273
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=21.46 E-value=2.3e+02 Score=26.12 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 344 TWMITLLVIILACAGKIAGTLLVS 367 (784)
Q Consensus 344 ~~~~~~~~~~~~~~~K~~~~~l~~ 367 (784)
.|...+..++..+++-++++++..
T Consensus 95 ~~~~a~~y~~~s~~~gl~a~~lG~ 118 (128)
T PRK14212 95 DYFNGFSNILANVLLGLLMVFIGA 118 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555443
No 274
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.08 E-value=3.8e+02 Score=30.23 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhHHHHHHhhccccccc
Q 043446 313 KLEDFVSGLLLPLFFAISGLKTDISS 338 (784)
Q Consensus 313 ~l~~~~~~~~~plfF~~~G~~~d~~~ 338 (784)
.+...+++.++.+||..+|+.+.-+.
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~ 92 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKREL 92 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566789999999999999987443
No 275
>PRK12569 hypothetical protein; Provisional
Probab=21.00 E-value=4.4e+02 Score=27.26 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=62.1
Q ss_pred HHHHHHHhhHccCceEEEEEEEec-------CCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHh
Q 043446 525 IINAFENYEQHTGCVTVQPLTAIS-------PYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNL 597 (784)
Q Consensus 525 i~~a~~~~~~~~~~v~v~~~~~vs-------~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~v 597 (784)
-+.+++.+.+. .+.+++++.--+ .....++.|++..++.+.++++++..++ ...+.
T Consensus 94 QigaL~~~~~~-~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~s----------------~~~~~ 156 (245)
T PRK12569 94 QLGALREFARA-HGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDGS----------------ATERA 156 (245)
T ss_pred HHHHHHHHHHH-cCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCc----------------HHHHH
Confidence 34567777776 677777764221 1235678899999999999999985432 11233
Q ss_pred hccCCCceE--EEecCCCCCCccccccCcceeEEEec-cCCc-chHHHHHHHHHHhcCCC
Q 043446 598 LANAPCSVG--ILVDRGLNGSTRLAANQVTHNIAVLF-FGGP-DDREALAYAWRMSEHPG 653 (784)
Q Consensus 598 l~~apc~V~--ilv~rg~~~~~~~~~~~~~~~I~v~~-~gg~-~~~~al~~a~~la~~~~ 653 (784)
.+..-.++. +|.||.+....+ |+|= --|+ |.+++++-+.+|+++..
T Consensus 157 A~~~Gl~~~~E~FADR~Y~~dG~----------Lv~R~~~gAvd~~~~~~~~~~m~~~g~ 206 (245)
T PRK12569 157 ARELGQPVVREFYADRDYDDSGS----------IVFTRRVGALDPQQVAAKVLRACREGK 206 (245)
T ss_pred HHHcCCCeEEEEEecCccCCCCC----------EecCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 333333332 678998752111 2211 1123 78899999999998754
No 276
>PRK14208 camphor resistance protein CrcB; Provisional
Probab=20.81 E-value=4.2e+02 Score=24.34 Aligned_cols=39 Identities=8% Similarity=0.126 Sum_probs=18.2
Q ss_pred HHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 043446 328 AISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLV 366 (784)
Q Consensus 328 ~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~ 366 (784)
.+.-+..|...+.....|...+..++..+++-++++++.
T Consensus 79 TFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG 117 (126)
T PRK14208 79 TYSSFNYETLALLEQGRLAAAAAYLLATVLGCLAAAFAA 117 (126)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333322345545555555555555555444
No 277
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=20.73 E-value=9e+02 Score=28.62 Aligned_cols=88 Identities=22% Similarity=0.371 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhh-----
Q 043446 42 QLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGV----- 116 (784)
Q Consensus 42 ~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gl----- 116 (784)
.+.+..+++.+++. |+|...-||++..+..|...... ...+..-++.|.-|.
T Consensus 457 ~L~lt~~~siiLGM-----GlPttanYIi~atl~aP~l~~~g------------------v~~laaH~FVFYfGi~AdiT 513 (642)
T COG4666 457 LLVLTMVISIILGM-----GLPTTANYIITATLAAPALIELG------------------VPLLAAHFFVFYFGIMADIT 513 (642)
T ss_pred HHHHHHHHHHHhcC-----CCCCccHHHHHHHHHHHHHHHcC------------------chHHHHHHHHHHHHHHccCC
Confidence 33444444444444 99999999999999999764332 111222234444444
Q ss_pred -----------ccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043446 117 -----------EMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFIL 152 (784)
Q Consensus 117 -----------e~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l 152 (784)
.+--.+..|.+-.++.+++..+++||.+.+-=..++
T Consensus 514 PPVaLaAfAaA~IA~~dp~kTg~~a~k~al~~~ivpf~fv~~P~lll 560 (642)
T COG4666 514 PPVALAAFAAAGIAGADPVKTGFTAFKLALAKFIVPFMFVYNPALLL 560 (642)
T ss_pred ChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhchhhhe
Confidence 344456688889999999999999987776544444
No 278
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=20.71 E-value=1.6e+02 Score=30.49 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=28.3
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
..+++|.+.||.|+--++.++.+. +.++..+++..
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~ 46 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVS 46 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecC
Confidence 468999999999999999988775 45677777753
No 279
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.62 E-value=1.5e+02 Score=29.41 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.9
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee
Q 043446 627 NIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFI 662 (784)
Q Consensus 627 ~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~ 662 (784)
++++.+.||.|+--|+..|.+. +-++..+...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~ 32 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNL 32 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 4789999999999999988772 3455545444
No 280
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=20.57 E-value=1.2e+03 Score=25.82 Aligned_cols=256 Identities=14% Similarity=0.101 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccccCCcc-ccccc--ccCc-----c-----cHHHHHHHHHHH
Q 043446 40 ILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNT-AFANT--IFPL-----R-----SVMVLETMANVG 106 (784)
Q Consensus 40 l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~lg~~~-~~~~~--lfp~-----~-----~~~~l~~l~~ig 106 (784)
.-++..+++...+++.-.+|--=|.+.-.|-.|+++.+.-+...+ ..... +.+. . ....++.+-+.|
T Consensus 22 ~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~g 101 (399)
T TIGR03136 22 ITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFT 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHH
Confidence 446666666666667777777779999999999999864321000 00000 0000 0 012344333333
Q ss_pred H------HHHHHHHhhccChhHHHhchhhHHHH-HHHHH--HHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccH
Q 043446 107 L------LYFLFLVGVEMDISAIRRTGKKALAI-AVGGM--TLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAF 177 (784)
Q Consensus 107 l------~~llF~~Gle~d~~~l~~~~~~~~~i-a~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~ 177 (784)
+ .++.+-+|-=+|+.-+..+.|..+.. +..++ .+++. .+.+++ .+. .++..+|++-..-.|
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~----~A~~lG---F~~---~eAAsIgIIGgADGP 171 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLV----IGYYCG---LTP---GEAAAVGTIGGADGP 171 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHH----HHHHcC---CCH---HHhhHHhhcccCCcc
Confidence 3 24566678899999999999887763 33333 33332 222332 222 345555555543222
Q ss_pred HHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 043446 178 PVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIR- 256 (784)
Q Consensus 178 ~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~- 256 (784)
..+.-. .++.+.-+|.++ .+-.. +..++..+-+|+++.+..
T Consensus 172 TaIf~s---~kLAp~Llg~Ia--------------VAAYs---------------------YMaLVPiiqPpimklLttk 213 (399)
T TIGR03136 172 MVLFAS---LILAKDLFVPIS--------------IIAYL---------------------YLSLTYAGYPYLIKLLVPK 213 (399)
T ss_pred HHHHHH---HhhhhHhHHHHH--------------HHHHH---------------------HHHHHhcccchHHHhhcCH
Confidence 211111 121222122111 11000 111122233444444322
Q ss_pred ---Hc----CCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhhHHHHHH
Q 043446 257 ---RT----PEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAI 329 (784)
Q Consensus 257 ---~~----~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~~~~~plfF~~ 329 (784)
+. +..+-.+...+.+-+....+++.+. =.-.+.+|.+++|-.+++... +++.+..+.-......-+.=..
T Consensus 214 kER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsGv-~rLs~taqn~l~nivTifLGl~ 290 (399)
T TIGR03136 214 KYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQI-EPYQNLLEKTLTYGSTLFLGLV 290 (399)
T ss_pred HHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111122334555555555555442 234689999999999998433 4444444333223333233467
Q ss_pred hhccccccccccchhHH
Q 043446 330 SGLKTDISSIHGTSTWM 346 (784)
Q Consensus 330 ~G~~~d~~~l~~~~~~~ 346 (784)
+|...+-+.+.++++..
T Consensus 291 vG~t~~A~~FL~~~tl~ 307 (399)
T TIGR03136 291 LGVLCEASTLLDPRVSI 307 (399)
T ss_pred hhhhccHHhhCChHHHH
Confidence 88888877777655543
No 281
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=20.43 E-value=1.3e+03 Score=26.17 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HcccCCChhHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhcc----ChhHHHhchhhHHH
Q 043446 57 LKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEM----DISAIRRTGKKALA 132 (784)
Q Consensus 57 ~~rl~~P~iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~----d~~~l~~~~~~~~~ 132 (784)
.||..+-...-+++.|+++| ..+|..-.-....+.+-+.-.++.+--+-+-++++..-..+ |.+.+.|.+.+.+.
T Consensus 1 ~~~~~~~~l~~~iligl~lG-i~~G~~~~~~~~~l~~iG~iFl~lLkm~VvPLVf~Sii~gI~~l~~~~~lg~i~~~~~~ 79 (428)
T PRK01663 1 MKKPLYKSLYFQVLVAIIIG-ILLGHFYPELGAQMKPLGDGFIKLIKMIIAPIIFCTVVTGIAGMGDMKKVGRVGGKALL 79 (428)
T ss_pred CCchHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hcCCCch-hHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHH
Q 043446 133 IAVGGMTLPFVIGGCFSFILHK-KNQGMNQ-GTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAW 210 (784)
Q Consensus 133 ia~~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~ 210 (784)
.-+....+..+++..++..+.+ .+.+... ....--................+.+.= -+..+..++ =++++.+
T Consensus 80 ~f~~tt~iA~~lgl~~~~l~~pg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-P~Nif~ala-----~gnvL~v 153 (428)
T PRK01663 80 YFEIVSTIALIIGLIVVNVVQPGAGMNIDPATLDAKAVAQYAAQAHEQGTVDFLMDII-PTTVVGAFA-----SGDILQV 153 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCcccccccchhhcccccccccccHHHHHHHHC-CCchHHHHh-----cCChHHH
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhh
Q 043446 211 VLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHS 290 (784)
Q Consensus 211 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~ 290 (784)
++++++..++-......... ..-+.=...-++-.+..|+.+..| .-+...++.............+..
T Consensus 154 IvFai~~GiAl~~~~e~~~~-----l~~~~~~~~~vi~kii~~im~laP-------iGVfaliA~~v~~~g~~~l~~l~~ 221 (428)
T PRK01663 154 LLFAVLFGFALARLGEKGKP-----VFDFIESLSHVLFGIVNMIMKLAP-------IGAFGAMAFTIGKYGVGSLVQLGQ 221 (428)
T ss_pred HHHHHHHHHHHHhcccccch-----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCHHHHHHHHH
Q ss_pred hHHHHHHHhhc
Q 043446 291 VFGAFVFGLVI 301 (784)
Q Consensus 291 ~lgaf~aGl~l 301 (784)
+++.+..+.++
T Consensus 222 ~l~~~~~~~~i 232 (428)
T PRK01663 222 LIGCFYITCIL 232 (428)
T ss_pred HHHHHHHHHHH
No 282
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=20.38 E-value=1.3e+02 Score=30.68 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhHcccCCCh------hHHHHHHHHhhcccccCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhh
Q 043446 43 LTLVVVTTRLLVLVLKPFRQPR------VISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGV 116 (784)
Q Consensus 43 l~lil~~~~l~~~l~~rl~~P~------iv~~ilaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gl 116 (784)
+.++...+...+++.+-.+.|. .+|++++|.++-...+- ...+. ...+-..+..+.+..+.-..|+
T Consensus 102 ~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~-----~~~~~---~~iv~s~l~t~a~~I~~ik~gL 173 (252)
T KOG3826|consen 102 LIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFV-----NGAVC---APIVVSPLRTVALTIIKIKAGL 173 (252)
T ss_pred eehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchh-----hhcee---eeeeehhhhhccchHHHHHhhh
Confidence 3445566667777777666655 99999999766543211 00010 0123344566777888889999
Q ss_pred ccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHhhccHHHH
Q 043446 117 EMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVL 180 (784)
Q Consensus 117 e~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~ls~Ts~~vv 180 (784)
+++.+.+++........++..-.+..-.....+.++... +| ..++..|.+.........
T Consensus 174 gt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~--~i---i~~~l~g~v~~~i~~~~~ 232 (252)
T KOG3826|consen 174 GTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLLAG--PI---IWAFLLGIVIGSILWRFP 232 (252)
T ss_pred cccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHhcc--ch---HHHhccccceeeeecCCc
Confidence 999999998887777665555555444455555555332 33 557777776655554433
No 283
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.33 E-value=8.6e+02 Score=24.67 Aligned_cols=76 Identities=13% Similarity=-0.015 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhHccCceEEEEEEEecCCCCh--HHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhc
Q 043446 522 SDHIINAFENYEQHTGCVTVQPLTAISPYSSM--HEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLA 599 (784)
Q Consensus 522 ~~~i~~a~~~~~~~~~~v~v~~~~~vs~~~~~--~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~ 599 (784)
..++.+.+++..++ .+.++.....-+ ..+. ..+..+...++++|-||+..... . ...+..+ -++
T Consensus 14 ~~~~~~gi~~~~~~-~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~----~-------~~~~~~~-~~~ 79 (275)
T cd06320 14 WRSLKEGYENEAKK-LGVSVDIQAAPS-EGDQQGQLSIAENMINKGYKGLLFSPISD----V-------NLVPAVE-RAK 79 (275)
T ss_pred HHHHHHHHHHHHHH-hCCeEEEEccCC-CCCHHHHHHHHHHHHHhCCCEEEECCCCh----H-------HhHHHHH-HHH
Confidence 45666677776665 555544322111 1222 23456666778899877643211 0 0222233 355
Q ss_pred cCCCceEEEecCC
Q 043446 600 NAPCSVGILVDRG 612 (784)
Q Consensus 600 ~apc~V~ilv~rg 612 (784)
+..+||.. +++.
T Consensus 80 ~~~iPvV~-~~~~ 91 (275)
T cd06320 80 KKGIPVVN-VNDK 91 (275)
T ss_pred HCCCeEEE-ECCC
Confidence 67788876 5664
No 284
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.25 E-value=1.8e+02 Score=31.22 Aligned_cols=52 Identities=13% Similarity=0.323 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhccCCCceEEEEEec---CChHHHHHHHHhcc-----CCccEEEEcccCCC
Q 043446 693 DEEYINEFRMKIANDESVVYTEKLA---NNGEETLAAIRSMD-----HSHDLFIVGRGQGV 745 (784)
Q Consensus 693 ~~~~~~~~~~~~~~~~~v~~~e~~v---~~g~~~~~~i~~~~-----~~~DLiivG~~~~~ 745 (784)
-.+++..+..+... .++.+....| +-..+++.+++... .+||+||++|+|+.
T Consensus 28 ~~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 28 IQDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 45666666665432 3344444445 33456667777663 25999999999973
No 285
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.14 E-value=3.4e+02 Score=26.27 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEEEEe
Q 043446 634 GGPDDREALAYAWRMSEHPGNNLTVMRF 661 (784)
Q Consensus 634 gg~~~~~al~~a~~la~~~~~~ltv~~~ 661 (784)
=.+.|.|+++.|.+|++ .+.+++++-+
T Consensus 17 l~~~~~e~l~~A~~l~~-~~~~v~~v~~ 43 (181)
T cd01985 17 LNPLDLEAVEAALRLKE-YGGEVTALVI 43 (181)
T ss_pred cCHhhHHHHHHHHHHhh-cCCeEEEEEE
Confidence 36889999999999987 5556665554
Done!