Query 043446
Match_columns 784
No_of_seqs 323 out of 2088
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1.5E-23 5.3E-28 225.5 10.6 302 97-431 58-384 (388)
2 3mt0_A Uncharacterized protein 99.9 8.3E-22 2.8E-26 209.3 22.3 261 454-784 8-275 (290)
3 3olq_A Universal stress protei 99.9 8.8E-22 3E-26 211.9 16.9 287 454-784 8-304 (319)
4 3cis_A Uncharacterized protein 99.9 8E-22 2.7E-26 211.4 15.5 281 452-784 18-305 (309)
5 3loq_A Universal stress protei 99.9 1.2E-21 4E-26 208.6 13.7 265 453-784 22-289 (294)
6 3ab8_A Putative uncharacterize 99.8 7.3E-21 2.5E-25 199.5 16.4 259 455-784 2-268 (268)
7 1mjh_A Protein (ATP-binding do 99.4 3.4E-12 1.2E-16 122.5 12.5 142 454-608 6-157 (162)
8 3hgm_A Universal stress protei 99.3 7.5E-13 2.6E-17 124.7 7.0 142 454-608 3-147 (147)
9 3s3t_A Nucleotide-binding prot 99.3 1.4E-12 4.8E-17 122.7 8.3 138 454-608 6-145 (146)
10 2dum_A Hypothetical protein PH 99.3 3.1E-12 1.1E-16 123.9 10.8 142 454-610 6-156 (170)
11 3fdx_A Putative filament prote 99.3 3.8E-12 1.3E-16 119.3 10.1 137 454-608 2-142 (143)
12 3tnj_A Universal stress protei 99.3 4.1E-12 1.4E-16 120.2 8.5 140 453-609 6-146 (150)
13 3dlo_A Universal stress protei 99.3 6.1E-12 2.1E-16 120.1 9.6 130 453-608 24-154 (155)
14 1tq8_A Hypothetical protein RV 99.3 7E-12 2.4E-16 120.7 9.3 138 452-608 16-156 (163)
15 2gm3_A Unknown protein; AT3G01 99.3 2.2E-11 7.4E-16 118.5 11.6 149 453-611 5-164 (175)
16 2z08_A Universal stress protei 99.2 8.9E-12 3E-16 116.0 8.0 133 454-608 3-136 (137)
17 3fg9_A Protein of universal st 99.2 6.1E-12 2.1E-16 119.9 6.6 138 452-608 14-155 (156)
18 3idf_A USP-like protein; unive 99.2 2.2E-11 7.6E-16 113.3 7.5 133 455-608 3-137 (138)
19 3dlo_A Universal stress protei 99.2 4.2E-11 1.5E-15 114.2 9.2 131 623-784 22-155 (155)
20 1jmv_A USPA, universal stress 99.2 5.8E-11 2E-15 110.9 9.2 134 454-610 3-138 (141)
21 3s3t_A Nucleotide-binding prot 99.2 1.8E-10 6.1E-15 108.2 12.1 139 624-784 4-146 (146)
22 3idf_A USP-like protein; unive 99.1 4.5E-10 1.5E-14 104.4 13.5 135 626-784 2-138 (138)
23 3hgm_A Universal stress protei 99.1 1.1E-10 3.9E-15 109.6 9.4 140 625-783 2-147 (147)
24 1mjh_A Protein (ATP-binding do 99.0 1.1E-09 3.9E-14 104.7 12.2 145 624-784 4-158 (162)
25 3fg9_A Protein of universal st 99.0 3.4E-10 1.2E-14 107.7 7.9 138 623-784 13-156 (156)
26 3tnj_A Universal stress protei 99.0 2.5E-10 8.6E-15 107.7 6.2 139 624-784 5-146 (150)
27 2z08_A Universal stress protei 99.0 1.1E-09 3.7E-14 101.7 10.4 134 625-784 2-137 (137)
28 3fdx_A Putative filament prote 99.0 1.5E-09 5.1E-14 101.4 11.2 137 626-784 2-143 (143)
29 1q77_A Hypothetical protein AQ 99.0 6E-10 2.1E-14 103.6 8.4 130 454-608 5-137 (138)
30 1tq8_A Hypothetical protein RV 99.0 1.1E-09 3.8E-14 105.2 10.5 139 622-784 14-157 (163)
31 3mt0_A Uncharacterized protein 99.0 3.6E-10 1.2E-14 119.3 7.5 137 452-611 133-277 (290)
32 2dum_A Hypothetical protein PH 99.0 1.7E-09 5.8E-14 104.4 11.1 146 624-784 4-155 (170)
33 3olq_A Universal stress protei 98.9 2.2E-09 7.4E-14 114.8 8.5 146 452-613 155-308 (319)
34 1jmv_A USPA, universal stress 98.8 3.1E-09 1.1E-13 99.0 6.6 133 625-783 2-136 (141)
35 3loq_A Universal stress protei 98.8 6E-09 2E-13 110.1 9.1 121 451-608 168-288 (294)
36 2gm3_A Unknown protein; AT3G01 98.8 2.4E-08 8.4E-13 96.7 11.5 143 624-783 4-161 (175)
37 3ab8_A Putative uncharacterize 98.8 1.2E-08 4.1E-13 106.1 9.6 141 626-784 1-148 (268)
38 3cis_A Uncharacterized protein 98.7 1.3E-08 4.5E-13 108.3 8.8 133 453-608 171-304 (309)
39 1q77_A Hypothetical protein AQ 98.7 5.9E-08 2E-12 89.9 11.1 129 624-784 3-138 (138)
40 3zux_A Transporter, ASBTNM; tr 97.8 0.021 7.2E-07 60.7 30.1 107 102-221 44-156 (332)
41 3g40_A Na-K-CL cotransporter; 97.4 0.0077 2.6E-07 61.3 18.4 221 453-744 20-255 (294)
42 3a2k_A TRNA(Ile)-lysidine synt 80.0 7.2 0.00024 43.1 10.7 96 625-744 18-130 (464)
43 1ni5_A Putative cell cycle pro 75.0 5.7 0.00019 43.5 7.9 95 625-744 13-119 (433)
44 2l0e_A Sodium/hydrogen exchang 73.8 1 3.4E-05 29.9 0.9 26 163-188 4-29 (33)
45 1wy5_A TILS, hypothetical UPF0 72.3 15 0.0005 38.2 10.0 39 625-663 24-63 (317)
46 3zux_A Transporter, ASBTNM; tr 66.2 66 0.0023 33.5 13.5 125 295-431 28-155 (332)
47 1zun_A Sulfate adenylyltransfe 63.3 9.7 0.00033 39.8 6.3 38 626-663 47-84 (325)
48 2k3c_A TMIX peptide; membrane 56.3 0.36 1.2E-05 32.1 -3.9 27 277-303 4-30 (33)
49 1efp_B ETF, protein (electron 56.2 44 0.0015 33.4 9.4 31 631-662 32-64 (252)
50 1sur_A PAPS reductase; assimil 55.4 55 0.0019 31.5 9.9 34 626-663 45-78 (215)
51 1iv0_A Hypothetical protein; r 53.4 27 0.00094 29.3 6.3 57 552-612 38-94 (98)
52 2wsi_A FAD synthetase; transfe 52.6 35 0.0012 35.1 8.3 93 626-745 54-169 (306)
53 1o97_C Electron transferring f 50.9 38 0.0013 34.1 8.0 33 630-662 31-65 (264)
54 1efv_B Electron transfer flavo 49.4 46 0.0016 33.3 8.3 32 630-662 34-67 (255)
55 3gxq_A Putative regulator of t 46.5 11 0.00037 26.2 2.0 26 541-568 12-37 (54)
56 3k32_A Uncharacterized protein 44.0 1.5E+02 0.0052 28.0 11.0 35 625-663 6-40 (203)
57 3w01_A Heptaprenylglyceryl pho 35.0 1.3E+02 0.0045 29.5 8.7 84 542-640 13-96 (235)
58 2htg_A NHE-1, NHE1 isoform of 30.2 1.7 5.7E-05 27.6 -3.7 24 190-213 2-25 (28)
59 3c6k_A Spermine synthase; sper 30.1 73 0.0025 33.8 6.4 30 713-742 264-293 (381)
60 2k4m_A TR8_protein, UPF0146 pr 29.5 80 0.0027 28.7 5.6 36 542-577 91-126 (153)
61 2oq2_A Phosphoadenosine phosph 29.3 50 0.0017 33.1 4.8 37 626-663 42-78 (261)
62 3vzx_A Heptaprenylglyceryl pho 28.5 1.2E+02 0.0042 29.6 7.3 85 542-641 8-92 (228)
63 3hut_A Putative branched-chain 28.1 4E+02 0.014 26.8 12.0 39 556-607 63-101 (358)
64 3fwk_A FMN adenylyltransferase 23.8 3.1E+02 0.011 28.0 9.5 92 626-744 59-171 (308)
65 4evq_A Putative ABC transporte 22.8 4.3E+02 0.015 26.7 11.1 79 563-660 80-158 (375)
66 1nu0_A Hypothetical protein YQ 20.7 78 0.0027 28.3 3.8 58 552-611 40-97 (138)
67 1vhx_A Putative holliday junct 20.1 91 0.0031 28.3 4.2 60 550-612 40-99 (150)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.89 E-value=1.5e-23 Score=225.55 Aligned_cols=302 Identities=18% Similarity=0.189 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHH----Hhchh--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 043446 97 MVLETMANVGLLYFLFLVGVEMDISAI----RRTGK--KALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGV 170 (784)
Q Consensus 97 ~~l~~l~~igl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~ 170 (784)
.....+.+-.+.++||.+|+|+|.+.+ ++.+| .....++.|+++|+++.. . ++.+. ..+.....
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~-----~--~~~~~---~~~~~gw~ 127 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL-----A--FNYAD---PITREGWA 127 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG-----G--GCCSS---TTHHHHTS
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH-----H--HhcCC---hhhhhhhH
Confidence 356778888999999999999999877 55444 478889999999987732 1 11111 23556667
Q ss_pred HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 043446 171 ALSVTAFPVLARILAELKL-INTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRP 249 (784)
Q Consensus 171 ~ls~Ts~~vv~~il~el~~-~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 249 (784)
+.+.||.+....++..++. .++..++.+++.+++||+.+|++++++.. .+ .. .. .+...+++.+..
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~~--~~-~l~~~~~~~~~~------ 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-LS--MA-SLGVAAVAIAVL------ 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-CC--HH-HHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-cc--HH-HHHHHHHHHHHH------
Confidence 7777999999999999754 56777799999999999999999997742 22 11 11 111111111111
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C----cchhHHHHHHHHHHHhhhhH
Q 043446 250 AICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-G----PLGLTLIEKLEDFVSGLLLP 324 (784)
Q Consensus 250 ~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~----~~~~~l~~~l~~~~~~~~~p 324 (784)
+..+|... +....+..+. +.+.+.++..|+|+.+|+|++|+++|. . +..++++++++++++.+++|
T Consensus 195 ---~~l~r~~v----~~~~~y~~lg--l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilP 265 (388)
T 1zcd_A 195 ---AVLNLCGA----RRTGVYILVG--VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILP 265 (388)
T ss_dssp ---HHHHHTTC----CCTHHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHH
T ss_pred ---HHHHHhcc----hhHHHHHHHH--HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 22233211 1222333332 244566799999999999999999998 3 45788999999999899999
Q ss_pred HH-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHHHHH
Q 043446 325 LF-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLVEMI 393 (784)
Q Consensus 325 lf-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l~ 393 (784)
+| |+..|.++|......... ...+.+++..+++|++|++..++.. |++|+|...+|++++.+++++++
T Consensus 266 lFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~ 344 (388)
T 1zcd_A 266 LFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIF 344 (388)
T ss_dssp HHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHH
T ss_pred HHHHHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHH
Confidence 99 999999999753322111 1223445556899999966666666 89999999999999999999999
Q ss_pred HHHhhccCCc--CChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 043446 394 VLNVGKDQKV--LDDESFAIMVIVAVVMTGIITPIVTSIY 431 (784)
Q Consensus 394 ~~~~~~~~~~--i~~~~~~~lv~~~vv~t~i~~pl~~~l~ 431 (784)
+++.+++.+. +.++.+..+++++++++.+.+.++++.+
T Consensus 345 Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 345 IASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998876 3566788887888776666665555433
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.88 E-value=8.3e-22 Score=209.32 Aligned_cols=261 Identities=13% Similarity=0.129 Sum_probs=182.9
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.+||+|+++++....+++.+..++. ..+.+++++|+++ + . . . ++..++..+.+ .
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~-~---------~------~-~----~~~l~~~~~~~---~ 61 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAG--VTQSHLHLLVCEK-R---------R------D-H----SAALNDLAQEL---R 61 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHH--HHCCEEEEEEECS-S---------S------C-C----HHHHHHHHHHH---H
T ss_pred ceEEEEeCCCccchHHHHHHHHHHH--hcCCeEEEEEeeC-c---------H------H-H----HHHHHHHHHHH---h
Confidence 4899999999999999999999884 3567899999986 1 0 0 0 12223333322 2
Q ss_pred HccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCC
Q 043446 534 QHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGL 613 (784)
Q Consensus 534 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~ 613 (784)
. .++++++....+ .+..+.|++.|++.++|+||||+|++...++. .+|++.+++++++||||+++. .+.
T Consensus 62 -~-~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~------~~gs~~~~vl~~~~~PVlvv~-~~~ 130 (290)
T 3mt0_A 62 -E-EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA------ILTPDDWKLLRFAPCPVLMTK-TAR 130 (290)
T ss_dssp -H-TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT------SCCHHHHHHHHHCSSCEEEEC-CCS
T ss_pred -h-CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhc------ccCHHHHHHHhcCCCCEEEec-CCC
Confidence 2 678888877644 47999999999999999999999987654443 389999999999999999963 221
Q ss_pred CCCccccccCcceeEEEeccCCcc-------hHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccc
Q 043446 614 NGSTRLAANQVTHNIAVLFFGGPD-------DREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETEN 686 (784)
Q Consensus 614 ~~~~~~~~~~~~~~I~v~~~gg~~-------~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (784)
.. ..++|++|+||++. ++.|+++|.++|+..+++++++|+.++...... ..+ . +..
T Consensus 131 -------~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~~-----~-~~~ 193 (290)
T 3mt0_A 131 -------PW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA---DPT-----F-QLS 193 (290)
T ss_dssp -------CS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC------------C-----H-HHH
T ss_pred -------CC-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc---Cch-----h-HHH
Confidence 12 57899999999998 899999999999999999999999864321000 000 0 000
Q ss_pred hhhhhhHHHHHHHHHhhccCCCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccch
Q 043446 687 DNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIG 766 (784)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~ig 766 (784)
+..++..++.++++.+++.-. .+.+. ....+..+.+.... .+.++||+|||++++ +|+.+|- +|.+.
T Consensus 194 ~~~~~~~~~~l~~~~~~~g~~-~~~~~-v~~g~~~~~I~~~a-~~~~~dLiVmG~~g~------~~~~~~~----~Gsv~ 260 (290)
T 3mt0_A 194 ETIEARYREACRTFQAEYGFS-DEQLH-IEEGPADVLIPRTA-QKLDAVVTVIGTVAR------TGLSGAL----IGNTA 260 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-TTTEE-EEESCHHHHHHHHH-HHHTCSEEEEECCSS------CCGGGCC----SCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC-cceEE-EeccCHHHHHHHHH-HhcCCCEEEECCCCC------cCCccee----cchHH
Confidence 223344556677776665221 11111 22234443333222 234589999999998 7777764 89999
Q ss_pred hhhhcCCCCCcccEEEEC
Q 043446 767 DLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 767 d~las~d~~~~~svLvvq 784 (784)
+.+... ++++||||.
T Consensus 261 ~~vl~~---~~~pVLvv~ 275 (290)
T 3mt0_A 261 EVVLDT---LESDVLVLK 275 (290)
T ss_dssp HHHHTT---CSSEEEEEC
T ss_pred HHHHhc---CCCCEEEEC
Confidence 999987 789999984
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.87 E-value=8.8e-22 Score=211.94 Aligned_cols=287 Identities=14% Similarity=0.106 Sum_probs=186.3
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.+||+|+++++....+++.+..++. +.+.+++++|+++.............. .....+...++.++.++.+....
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 82 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQ--RNGGRIKAFLPVYDLSYDMTTLLSPDE---RNAMRKGVINQKTAWIKQQARYY 82 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHH--HHCCEEEEEEEECCGGGGCTTTSCHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHH--HcCCeEEEEEEecccchhhccccChhh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998884 456899999998632110000000000 00000000122233333333322
Q ss_pred HccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCC
Q 043446 534 QHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGL 613 (784)
Q Consensus 534 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~ 613 (784)
.. .++++++..... .+..+.|++.|++.++||||||+|++...++.+ +|++.++|++++||||+++.++.
T Consensus 83 ~~-~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~- 152 (319)
T 3olq_A 83 LE-AGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKDKE- 152 (319)
T ss_dssp HH-TTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEESSC-
T ss_pred hh-cCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEEecCcc-
Confidence 23 678888888722 489999999999999999999999876554443 89999999999999999964332
Q ss_pred CCCccccccCcceeEEEeccCCcc-------hHHHHHHHHHHhcCC--CeEEEEEEeeecCCcCcccCCCCCCCCCcccc
Q 043446 614 NGSTRLAANQVTHNIAVLFFGGPD-------DREALAYAWRMSEHP--GNNLTVMRFIAAEEVEPAERQSPDQNGLTVET 684 (784)
Q Consensus 614 ~~~~~~~~~~~~~~I~v~~~gg~~-------~~~al~~a~~la~~~--~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (784)
....++|++++||+++ ++.|+++|.++++.. +++++++|+.+........ .... .....
T Consensus 153 --------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~-~~~~---~~~~~ 220 (319)
T 3olq_A 153 --------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAI-ELPD---FDPNL 220 (319)
T ss_dssp --------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCT-TCTT---CCHHH
T ss_pred --------cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhc-cCCc---ccHHH
Confidence 1256899999999995 599999999999988 9999999998653321000 0000 00000
Q ss_pred cchhhhhhHHHHHHHHHhhccCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccc
Q 043446 685 ENDNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELG 763 (784)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG 763 (784)
..++.++..++.++++.+++... .+.+. ....+..+ ..++.. +.++||+|||++++ +|+.+|- +|
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-v~~g~~~~--~I~~~a~~~~~dLiV~G~~g~------~~~~~~~----~G 286 (319)
T 3olq_A 221 YNNALRGQHLIAMKELRQKFSIP-EEKTH-VKEGLPEQ--VIPQVCEELNAGIVVLGILGR------TGLSAAF----LG 286 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-GGGEE-EEESCHHH--HHHHHHHHTTEEEEEEECCSC------CSTHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cccEE-EecCCcHH--HHHHHHHHhCCCEEEEeccCc------cCCcccc----cc
Confidence 00223344456777777665332 22222 12233333 233322 45689999999988 6777663 89
Q ss_pred cchhhhhcCCCCCcccEEEEC
Q 043446 764 AIGDLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 764 ~igd~las~d~~~~~svLvvq 784 (784)
.+.+.+..+ ++++||||.
T Consensus 287 sv~~~vl~~---~~~pVLvv~ 304 (319)
T 3olq_A 287 NTAEQLIDH---IKCDLLAIK 304 (319)
T ss_dssp HHHHHHHTT---CCSEEEEEC
T ss_pred HHHHHHHhh---CCCCEEEEC
Confidence 999999987 789999984
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=8e-22 Score=211.44 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=183.7
Q ss_pred CCceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHH
Q 043446 452 SEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 531 (784)
Q Consensus 452 ~e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 531 (784)
...+||+|+++++....+++.+..++. +.+.+++++|+++ +..... .... ...+..+...+..++.++.+..
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~-~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~~~ 89 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAE--LRKIPLTLVHAVS-PEVATW---LEVP--LPPGVLRWQQDHGRHLIDDALK 89 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHH--HHTCCEEEEEECC-CCCCCT---TCCC--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHH--hcCCcEEEEEEec-Cccccc---ccCC--CCchhhHHHHHHHHHHHHHHHH
Confidence 356899999999999999999888884 3567899999997 222110 0000 0000000012233444444333
Q ss_pred hhHc----cCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEE
Q 043446 532 YEQH----TGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGI 607 (784)
Q Consensus 532 ~~~~----~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~i 607 (784)
..+. ..++++++.+..+ +..++|++.|+ ++|+||||+|++.+..+.+ +|++.++|++++||||.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlv 158 (309)
T 3cis_A 90 VVEQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCPVVI 158 (309)
T ss_dssp HHHHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSCEEE
T ss_pred HHHHhcccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCCEEE
Confidence 2222 0267888877655 89999999986 8999999999876554443 899999999999999999
Q ss_pred EecCCCCCCccccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccch
Q 043446 608 LVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETEND 687 (784)
Q Consensus 608 lv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (784)
+.++... ......++|++++||++.++.|+++|.++|+..+++++++|+.++..... .+. .+ .+
T Consensus 159 v~~~~~~-----~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~------~~-~~ 222 (309)
T 3cis_A 159 IHDEDSV-----MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE----WPG------ID-WP 222 (309)
T ss_dssp ECTTCCC-----SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT----CSS------CC-HH
T ss_pred EcCCccc-----CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC----CCc------cc-HH
Confidence 6333210 11234679999999999999999999999999999999999986432100 000 00 02
Q ss_pred hhhhhHHHHHHHHHhhccC---CCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCcccc
Q 043446 688 NQRQLDEEYINEFRMKIAN---DESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGA 764 (784)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~---~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~ 764 (784)
+.++..++.+++..+++.. +.++.+. +..|......++..+ ++||+|||++++ +++.+|- +|.
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~g~~~~~I~~~a~-~adliV~G~~~~------~~~~~~l----~Gs 288 (309)
T 3cis_A 223 ATQSMAEQVLAERLAGWQERYPNVAITRV---VVRDQPARQLVQRSE-EAQLVVVGSRGR------GGYAGML----VGS 288 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHCTTSCEEEE---EESSCHHHHHHHHHT-TCSEEEEESSCS------SCCTTCS----SCH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcEEEE---EEcCCHHHHHHHhhC-CCCEEEECCCCC------CCccccc----cCc
Confidence 2233344555555444321 2233332 223332223333334 799999999987 6676653 899
Q ss_pred chhhhhcCCCCCcccEEEEC
Q 043446 765 IGDLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 765 igd~las~d~~~~~svLvvq 784 (784)
+.+.+... ++++||||.
T Consensus 289 v~~~vl~~---~~~pVlvv~ 305 (309)
T 3cis_A 289 VGETVAQL---ARTPVIVAR 305 (309)
T ss_dssp HHHHHHHH---CSSCEEEEC
T ss_pred HHHHHHhc---CCCCEEEeC
Confidence 99999987 789999984
No 5
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.86 E-value=1.2e-21 Score=208.62 Aligned_cols=265 Identities=12% Similarity=0.118 Sum_probs=180.8
Q ss_pred CceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHh
Q 043446 453 EFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY 532 (784)
Q Consensus 453 e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~ 532 (784)
-.|||+|+++++....+++.+..++. ..+.+++++|+++.+..... . .........+..+++.++.++.+...
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKK--VGVEEIGVLFVINLTKLSTV----S-GGIDIDHYIDEMSEKAEEVLPEVAQK 94 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHH--TTCCEEEEECCEECTTC----------CCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCcccccc----c-ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999998884 46789999999986542211 0 00001111111123345555555554
Q ss_pred hHccCceEEEE-EEE-ecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEec
Q 043446 533 EQHTGCVTVQP-LTA-ISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVD 610 (784)
Q Consensus 533 ~~~~~~v~v~~-~~~-vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~ 610 (784)
... .++++++ .+. .+ ++.++| .|++.++|+||||+|++.... +..+|++.++|++++||||.++ +
T Consensus 95 ~~~-~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~------~~~~Gs~~~~vl~~~~~PVlvv-~ 161 (294)
T 3loq_A 95 IEA-AGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFK------KILLGSVSEGVLHDSKVPVYIF-K 161 (294)
T ss_dssp HHH-TTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHH------HHHHCCHHHHHHHHCSSCEEEE-C
T ss_pred HHH-cCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCcccc------ceeeccHHHHHHhcCCCCEEEe-c
Confidence 444 6788887 454 44 889999 999999999999999764332 3348999999999999999996 3
Q ss_pred CCCCCCccccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhh
Q 043446 611 RGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQR 690 (784)
Q Consensus 611 rg~~~~~~~~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (784)
++.. .....++|++++||++.++.|+++|.++++..+++++++|+.++... +
T Consensus 162 ~~~~------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~----------------------~ 213 (294)
T 3loq_A 162 HDMV------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDK----------------------T 213 (294)
T ss_dssp CCTT------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCC----------------------H
T ss_pred Cccc------cCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchH----------------------H
Confidence 3221 12356899999999999999999999999999999999999854221 1
Q ss_pred hhHHHHHHHHHhhccCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhh
Q 043446 691 QLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLL 769 (784)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~l 769 (784)
+..+++.+.+++. +..+.+ .+..|......++.. +.++||+|||++++ +++.+|- +|.+.+.+
T Consensus 214 ~~l~~~~~~l~~~---~~~~~~---~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~------~~~~~~~----~Gs~~~~v 277 (294)
T 3loq_A 214 ADLRVMEEVIGAE---GIEVHV---HIESGTPHKAILAKREEINATTIFMGSRGA------GSVMTMI----LGSTSESV 277 (294)
T ss_dssp HHHHHHHHHHHHT---TCCEEE---EEECSCHHHHHHHHHHHTTCSEEEEECCCC------SCHHHHH----HHCHHHHH
T ss_pred HHHHHHHHHHHHc---CCcEEE---EEecCCHHHHHHHHHHhcCcCEEEEeCCCC------CCcccee----eCcHHHHH
Confidence 1222333333321 122332 223332222333322 44689999999988 6777663 89999999
Q ss_pred hcCCCCCcccEEEEC
Q 043446 770 ASSDFASTVSVLVVQ 784 (784)
Q Consensus 770 as~d~~~~~svLvvq 784 (784)
... .+++||||.
T Consensus 278 l~~---~~~pvLvv~ 289 (294)
T 3loq_A 278 IRR---SPVPVFVCK 289 (294)
T ss_dssp HHH---CSSCEEEEC
T ss_pred Hhc---CCCCEEEEC
Confidence 986 789999984
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.85 E-value=7.3e-21 Score=199.47 Aligned_cols=259 Identities=13% Similarity=0.086 Sum_probs=173.6
Q ss_pred eEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCc-------cccccchhhHHHH
Q 043446 455 RVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPA-------LNRTQAQSDHIIN 527 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~ 527 (784)
|||+|+++++....+++.+..++. +.+.+++++|+++......... ........+. .+...++.++.++
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAY--KLSAPLTVLFVVDTRLARIPEL--LDFGALTVPVPVLRTELERALALRGEAVLE 77 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHH--HHTCCEEEEEEEEHHHHTHHHH--C-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHH--HhCCcEEEEEEeccCCcccccc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999988884 3567899999997532110000 0000000000 0001223344555
Q ss_pred HHHHhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEcccccc-ccCCcccccChhHHHHHHHhhccCCCceE
Q 043446 528 AFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQ-TVDGGMEATNPAFRMVNQNLLANAPCSVG 606 (784)
Q Consensus 528 a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~-~~~~~~~~~~~~~~~~~~~vl~~apc~V~ 606 (784)
.+....+. .++++++.+..+ ++.+.|++. +.++|+||||.|++. ...+.+ +||+.++|++++||||.
T Consensus 78 ~~~~~~~~-~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 78 RVRQSALA-AGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHHHH-TTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHh-CCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCEE
Confidence 54444434 577888877766 899999998 999999999999875 554443 89999999999999999
Q ss_pred EEecCCCCCCccccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccc
Q 043446 607 ILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETEN 686 (784)
Q Consensus 607 ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (784)
++ +++. . ..++|++++||++.++.|+++|.++++..+++++++|+.++.+
T Consensus 146 vv-~~~~-------~--~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-------------------- 195 (268)
T 3ab8_A 146 LA-PGEP-------V--ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-------------------- 195 (268)
T ss_dssp EE-CSSC-------C--CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH--------------------
T ss_pred EE-CCCC-------C--CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH--------------------
Confidence 95 3321 1 4579999999999999999999999999999999999975321
Q ss_pred hhhhhhHHHHHHHHHhhccCCCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccch
Q 043446 687 DNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIG 766 (784)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~ig 766 (784)
..++..+++.+.+.+ .+..+.+. +.+|......++...+. ||++||+ |+.+| -+|.+.
T Consensus 196 -~~~~~l~~~~~~l~~---~~~~~~~~---~~~g~~~~~i~~~a~~~-dliV~G~----------~~~~~----~~Gs~~ 253 (268)
T 3ab8_A 196 -RAEAWALEAEAYLRD---HGVEASAL---VLGGDAADHLLRLQGPG-DLLALGA----------PVRRL----VFGSTA 253 (268)
T ss_dssp -HHHHHHHHHHHHHHH---TTCCEEEE---EECSCHHHHHHHHCCTT-EEEEEEC----------CCSCC----SSCCHH
T ss_pred -HHHHHHHHHHHHHHH---cCCceEEE---EeCCChHHHHHHHHHhC-CEEEECC----------ccccc----EeccHH
Confidence 111222233333322 12233332 22343333444544444 9999999 34444 389999
Q ss_pred hhhhcCCCCCcccEEEEC
Q 043446 767 DLLASSDFASTVSVLVVQ 784 (784)
Q Consensus 767 d~las~d~~~~~svLvvq 784 (784)
+.+... ++++||||.
T Consensus 254 ~~vl~~---~~~pvlvv~ 268 (268)
T 3ab8_A 254 ERVIRN---AQGPVLTAR 268 (268)
T ss_dssp HHHHHH---CSSCEEEEC
T ss_pred HHHHhc---CCCCEEEeC
Confidence 999987 789999984
No 7
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.36 E-value=3.4e-12 Score=122.47 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=97.6
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecC----CCcchhhccc--c-ccC---CCCccccccchhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTG----RASAMLIVHN--T-RKS---GRPALNRTQAQSD 523 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~----~~~~~~~~~~--~-~~~---~~~~~~~~~~~~~ 523 (784)
.|||+|+++++....+++.+..++. ..+.+++++|+++... .... +.... . ... .....++.+++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKT--LKAEEVILLHVIDEREIKKRDIFS-LLLGVAGLNKSVEEFENELKNKLTEEAK 82 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCC--SSCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCeEEEEEEecCcccccccccc-ccccccccccchhhhHHHHHHHHHHHHH
Confidence 4899999999999999999999984 4678999999997430 0000 00000 0 000 0000000122334
Q ss_pred HHHHHHHHhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCC
Q 043446 524 HIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPC 603 (784)
Q Consensus 524 ~i~~a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc 603 (784)
+.++.+....+. .++++++.+..+ ++.+.|++.|++.++|+||||.|++.+..+.+ +||+.++|++++||
T Consensus 83 ~~l~~~~~~~~~-~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 83 NKMENIKKELED-VGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHH-cCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCCC
Confidence 444444433333 678888877766 89999999999999999999999886555444 89999999999999
Q ss_pred ceEEE
Q 043446 604 SVGIL 608 (784)
Q Consensus 604 ~V~il 608 (784)
||+|+
T Consensus 153 pVlvv 157 (162)
T 1mjh_A 153 PVLVV 157 (162)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99996
No 8
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.35 E-value=7.5e-13 Score=124.69 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=98.5
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.|||+|++++++...+++.+..++. +.+.+++++|+++.+............ .......+..+++.++.++.+....
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQ--LTGAELYILCVFKHHSLLEASLSMARP-EQLDIPDDALKDYATEIAVQAKTRA 79 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHH--HHCCEEEEEEEECCHHHHHHTBSSCCC-GGGCCCTTHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCcccccccccccCh-hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999988884 356889999999754311100000000 0000011111234455565555554
Q ss_pred HccCceEE---EEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 534 QHTGCVTV---QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 534 ~~~~~v~v---~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+. .++++ ++.+..+ ++.+.|++.|++.++|+||||.|++.+..+.+ +||+.++|++++||||+|+
T Consensus 80 ~~-~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 80 TE-LGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HH-TTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEEC
T ss_pred Hh-cCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEEC
Confidence 44 56666 7777666 89999999999999999999999876555443 8999999999999999873
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.34 E-value=1.4e-12 Score=122.73 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=100.2
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.|||+|+++++....+++.+..++. ..+.+++++|+++.+........... ....++.+++.++.++.+....
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~ 78 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQ--RHQANLTALYVVDDSAYHTPALDPVL-----SELLDAEAAHAKDAMRQRQQFV 78 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEEECCCCCCGGGHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCcccccccccccc-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999988884 35788999999986543321100000 0000111233445555555444
Q ss_pred HccCce-EEEEEEEecCCCChHHHHHH-HHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 534 QHTGCV-TVQPLTAISPYSSMHEDICN-LAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 534 ~~~~~v-~v~~~~~vs~~~~~~~~I~~-~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+. .++ .+++.+..+ ++.+.|++ .|++.++|+||||.|++.+..+.+ +||+.++|++++||||+|+
T Consensus 79 ~~-~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 79 AT-TSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp TT-SSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred Hh-cCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEEe
Confidence 44 577 778887776 89999999 999999999999999876555443 8999999999999999985
No 10
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.34 E-value=3.1e-12 Score=123.85 Aligned_cols=142 Identities=12% Similarity=0.142 Sum_probs=95.3
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccc-------cCCCCccccccchhhHHH
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTR-------KSGRPALNRTQAQSDHII 526 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~ 526 (784)
.|||+|+++++....+++.+..++. +.+.+++++|+++....... ..... .+.....++.+++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNK--MEVGEVILLHVIDEGTLEEL---MDGYSFFYDNAEIELKDIKEKLKEEASRKL 80 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCC--SCCSEEEEEEEEETTGGGCC---C------------CCTTSHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCcccccc---ccccccccccccccHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999984 46789999999874321100 00000 000011111122334444
Q ss_pred HHHHHhhHccCceEEEE--EEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCc
Q 043446 527 NAFENYEQHTGCVTVQP--LTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCS 604 (784)
Q Consensus 527 ~a~~~~~~~~~~v~v~~--~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~ 604 (784)
+.+....+. .+++++. .+..+ ++.+.|++.|++.++|+||||.|++....+.+ +||+.++|++++|||
T Consensus 81 ~~~~~~~~~-~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~P 150 (170)
T 2dum_A 81 QEKAEEVKR-AFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKP 150 (170)
T ss_dssp HHHHHHHHH-HTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSC
T ss_pred HHHHHHHHH-cCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCC
Confidence 444333222 3566665 55555 89999999999999999999999876544433 899999999999999
Q ss_pred eEEEec
Q 043446 605 VGILVD 610 (784)
Q Consensus 605 V~ilv~ 610 (784)
|+|+.+
T Consensus 151 Vlvv~~ 156 (170)
T 2dum_A 151 VLIIKE 156 (170)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999743
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.32 E-value=3.8e-12 Score=119.27 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=95.7
Q ss_pred ceEEEEeeCCCC--hhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHH
Q 043446 454 FRVLVCVHTPRN--VPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 531 (784)
Q Consensus 454 ~riLv~v~~~~~--~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 531 (784)
.|||+|+++++. ...+++.+..++. ..+.+++++|+++......... ...... . +..++..++..+.++.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~--~~~~~~-~---~~~~~~~~~~~~~l~~ 73 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEAR--IDDAEVHFLTVIPSLPYYASLG--MAYTAE-L---PGMDELREGSETQLKE 73 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHH--HHTCEEEEEEEECC----------------------CHHHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHH--hcCCeEEEEEEecCCccccccc--ccccch-h---hhHHHHHHHHHHHHHH
Confidence 489999999999 9999999888883 3568899999998643221100 000000 0 1112334556666666
Q ss_pred hhHcc--CceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 532 YEQHT--GCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 532 ~~~~~--~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+.++. .++.+++.+..+ ++.+.|++.|++.++|+||||.|+ .+..+. .+||+.++|++++||||+|+
T Consensus 74 ~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~------~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 74 IAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC------SSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeee------eeccHHHHHHHhCCCCEEEe
Confidence 65542 345677777776 899999999999999999999995 444333 38999999999999999985
No 12
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.29 E-value=4.1e-12 Score=120.20 Aligned_cols=140 Identities=12% Similarity=0.127 Sum_probs=88.1
Q ss_pred CceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHh
Q 043446 453 EFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY 532 (784)
Q Consensus 453 e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~ 532 (784)
-.|||+|+++++....+++.+..++. ..+.+++++|+++......... ............ ++..++..+.++.+
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~ 79 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLAS--QIGARLSLIHVLDNIPMPDTPY-GTAIPLDTETTY---DAMLDVEKQKLSQI 79 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEC--------C-TTCCCSSSCCCH---HHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEEcCcccccccc-ccccCcCHHHHH---HHHHHHHHHHHHHH
Confidence 35899999999999999999998884 3568899999997543210000 000000001110 12223333444444
Q ss_pred hHccCceE-EEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEe
Q 043446 533 EQHTGCVT-VQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILV 609 (784)
Q Consensus 533 ~~~~~~v~-v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv 609 (784)
.++ .+++ ++.....+ ++.+.|++.|++.++|+||||.|++.+.. . .+||+.++|++++||||+|+.
T Consensus 80 ~~~-~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~------~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 80 GNT-LGIDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-L------LLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp HHH-HTCCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEE
T ss_pred HHH-cCCCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-e------EecchHHHHHHhCCCCEEEEe
Confidence 443 2333 34455555 89999999999999999999999875544 3 389999999999999999974
No 13
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.29 E-value=6.1e-12 Score=120.09 Aligned_cols=130 Identities=14% Similarity=0.187 Sum_probs=95.8
Q ss_pred CceEEEEeeC-CCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHH
Q 043446 453 EFRVLVCVHT-PRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 531 (784)
Q Consensus 453 e~riLv~v~~-~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 531 (784)
-.+||+|+++ ++....+++.+..++. ..+.+++++|+++.+.... +...+..++.++.+..
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~--~~~a~l~llhV~~~~~~~~----------------~~~~~~~~~~l~~~~~ 85 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEAR--LRGVPVYVVHSLPGGGRTK----------------DEDIIEAKETLSWAVS 85 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHH--HHTCCEEEEEEECCSTTSC----------------HHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEEcCCCccc----------------HHHHHHHHHHHHHHHH
Confidence 4589999999 9999999999988884 3467899999997432110 0012334455555444
Q ss_pred hhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 532 YEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 532 ~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
..++ .+++++..+.+. ..++.+.|++.|++.++|+||||.|++....+.+ +||++++|++++||||+|+
T Consensus 86 ~~~~-~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 86 IIRK-EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHH-TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred HHHh-cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEe
Confidence 4444 456666544441 2489999999999999999999999886555443 8999999999999999986
No 14
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.28 E-value=7e-12 Score=120.72 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=95.4
Q ss_pred CCceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEE--EeeeecCCCcchhhccccccCCCCccccccchhhHHHHHH
Q 043446 452 SEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVL--HLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF 529 (784)
Q Consensus 452 ~e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~L--hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 529 (784)
...|||+|+++++....+++.+..++. .+.+++++ |+++.+...... ... .....+..+++.++.++.+
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~l~~~ 86 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAAD--ILK----DESYKVTGTAPIYEILHDA 86 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC--------------------------CCTHHHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCccccccc--ccc----cHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999984 56889999 888643320110 000 0001111133455566555
Q ss_pred HHhhHccCceE-EEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 530 ENYEQHTGCVT-VQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 530 ~~~~~~~~~v~-v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
...... .+++ +++.+..+ ++.+.|+++|++.++|+||||.|++.+.. +..+||++++|++++||||+|+
T Consensus 87 ~~~~~~-~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~------~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 87 KERAHN-AGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIA------GRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HHHHHT-TTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHH------HHHTBBHHHHHHHHTTCEEEEE
T ss_pred HHHHHH-cCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCccc------ceeeccHHHHHHHhCCCCEEEE
Confidence 554444 5677 88777665 89999999999999999999999875433 3358999999999999999996
No 15
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.25 E-value=2.2e-11 Score=118.51 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=91.0
Q ss_pred CceEEEEeeCCC---------ChhHHHHHHHhhCCCC-CCCcEEEEEEeeeecCCCcchhhc-cccccCCCCccccccch
Q 043446 453 EFRVLVCVHTPR---------NVPTIINLLEASHPTK-RSPICVYVLHLVELTGRASAMLIV-HNTRKSGRPALNRTQAQ 521 (784)
Q Consensus 453 e~riLv~v~~~~---------~~~~li~l~~~l~~~~-~~~~~v~~Lhlvel~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 521 (784)
-.|||+|+++++ ....+++.+..++..+ ..+.+++++|+++........... ...........++..++
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 358999999999 8889999998865322 247899999998643211000000 00000000000000122
Q ss_pred hhHHHHHHHHhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccC
Q 043446 522 SDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANA 601 (784)
Q Consensus 522 ~~~i~~a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~a 601 (784)
.++.++.+...... .+++++..+..+ ++.+.|++.|++.++||||||.|++.+..+. .+||++++|++++
T Consensus 85 ~~~~l~~~~~~~~~-~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~------~~Gsva~~vl~~a 154 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE-IGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKV------FVGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHHH-HTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-CCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhh------hcCchHHHHHhCC
Confidence 34444444433333 467777777666 8999999999999999999999987654443 4999999999999
Q ss_pred CCceEEEecC
Q 043446 602 PCSVGILVDR 611 (784)
Q Consensus 602 pc~V~ilv~r 611 (784)
||||+|+.++
T Consensus 155 ~~pVlvv~~~ 164 (175)
T 2gm3_A 155 ECPVMTIKRN 164 (175)
T ss_dssp SSCEEEEECC
T ss_pred CCCEEEEcCC
Confidence 9999997433
No 16
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.25 E-value=8.9e-12 Score=116.00 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=89.8
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 533 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~ 533 (784)
.|||+|+++++....+++.+..++. ..+.+++++|+++.... . + ... ......+..+++.++. ++.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~--~-~--~~~--~~~~~~~~~~~~~~~~---l~~~~ 70 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAE--AHGARLIVVHAYEPVPD--Y-L--GEP--FFEEALRRRLERAEGV---LEEAR 70 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEECC---------------------CHHHHHHHHH---HHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCCCc--c-c--ccc--chHHHHHHHHHHHHHH---HHHHH
Confidence 4899999999999999999888884 35678999999873211 1 0 000 0001101011222333 33333
Q ss_pred HccCce-EEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 534 QHTGCV-TVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 534 ~~~~~v-~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+. .++ +++..+..+ ++.+.|++.|++.++|+||||.|++.+..+.+ +||+.++|++++||||+|+
T Consensus 71 ~~-~g~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 71 AL-TGVPKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HH-HCCCGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred HH-cCCCccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence 32 244 455555555 89999999999999999999999876554443 8999999999999999985
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.24 E-value=6.1e-12 Score=119.94 Aligned_cols=138 Identities=11% Similarity=0.120 Sum_probs=96.9
Q ss_pred CCceEEEEee--CCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHH
Q 043446 452 SEFRVLVCVH--TPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF 529 (784)
Q Consensus 452 ~e~riLv~v~--~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 529 (784)
.-.|||+|++ +++....+++.+..++. ..+.+++++|+++............ ...+..++..++.++.+
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~ 84 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAH--DYDVPLGICSVLESEDINIFDSLTP-------SKIQAKRKHVEDVVAEY 84 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHH--HHTCCEEEEEEECCCCTTCCCSSHH-------HHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEEeCCCccccccCCH-------HHHHHHHHHHHHHHHHH
Confidence 3458999999 99999999999888884 3567899999998643211100000 00011123344555554
Q ss_pred HHhhHccCce-EEEEEEEecCCCChHHHHHHH-HHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEE
Q 043446 530 ENYEQHTGCV-TVQPLTAISPYSSMHEDICNL-AEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGI 607 (784)
Q Consensus 530 ~~~~~~~~~v-~v~~~~~vs~~~~~~~~I~~~-A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~i 607 (784)
....+. .++ .+++.+..+ .++.+.|++. |++.++|+||||.|++.+.+ . .+||+.++|++++||||+|
T Consensus 85 ~~~~~~-~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~------~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 85 VQLAEQ-RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K------IAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHH-HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S------SCSCHHHHHHHHCSSEEEE
T ss_pred HHHHHH-cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-e------eecchHHHHHHhCCCCEEE
Confidence 444433 466 477777772 3899999999 99999999999999875443 2 3899999999999999998
Q ss_pred E
Q 043446 608 L 608 (784)
Q Consensus 608 l 608 (784)
+
T Consensus 155 V 155 (156)
T 3fg9_A 155 V 155 (156)
T ss_dssp E
T ss_pred e
Confidence 5
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.19 E-value=2.2e-11 Score=113.31 Aligned_cols=133 Identities=9% Similarity=0.107 Sum_probs=95.7
Q ss_pred eEEEEeeCCCChhHHHHHHHhhC-CCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCcccccc-chhhHHHHHHHHh
Q 043446 455 RVLVCVHTPRNVPTIINLLEASH-PTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQ-AQSDHIINAFENY 532 (784)
Q Consensus 455 riLv~v~~~~~~~~li~l~~~l~-~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~a~~~~ 532 (784)
|||+|+++++....+++.+..++ .. .+.+++++|+++.+........... +..++.+ ++.++.++.+...
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~ 74 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAY------DEIEMKEEEKAKLLTQKFSTF 74 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcH------HHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999988 43 5789999999986543221000000 0001112 3345555555554
Q ss_pred hHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 533 EQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 533 ~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
.+. .++++++.+..+ ++.+.|++.|+ ++|+||||.|++.+..+ .. ||+.++|++++||||+++
T Consensus 75 ~~~-~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~------~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 75 FTE-KGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNK------IF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHT-TTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSS------CC-CCTTCHHHHHCSSCEEEE
T ss_pred HHH-CCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHH------Hh-CcHHHHHHhcCCCCEEEe
Confidence 444 678888888776 89999999998 99999999998754433 23 778899999999999985
No 19
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.18 E-value=4.2e-11 Score=114.17 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=93.2
Q ss_pred CcceeEEEeccC-CcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHH
Q 043446 623 QVTHNIAVLFFG-GPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFR 701 (784)
Q Consensus 623 ~~~~~I~v~~~g-g~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (784)
..+++|+||+|| ++.++.|+++|.++|+..+++|+++|+.+.... .. +..++..++.++++.
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-------~~----------~~~~~~~~~~l~~~~ 84 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR-------TK----------DEDIIEAKETLSWAV 84 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT-------SC----------HHHHHHHHHHHHHHH
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc-------cc----------HHHHHHHHHHHHHHH
Confidence 356899999999 999999999999999999999999999874331 11 334455666777766
Q ss_pred hhccCC-CceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCccc
Q 043446 702 MKIAND-ESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVS 779 (784)
Q Consensus 702 ~~~~~~-~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~s 779 (784)
+.+.+. ..+.. +..+..|......++.. +.++||||||++++ +++.+| -+|++.+.+... ++++
T Consensus 85 ~~~~~~g~~~~~-~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~------~~~~~~----~lGSv~~~vl~~---a~~P 150 (155)
T 3dlo_A 85 SIIRKEGAEGEE-HLLVRGKEPPDDIVDFADEVDAIAIVIGIRKR------SPTGKL----IFGSVARDVILK---ANKP 150 (155)
T ss_dssp HHHHHTTCCEEE-EEEESSSCHHHHHHHHHHHTTCSEEEEECCEE------CTTSCE----ECCHHHHHHHHH---CSSC
T ss_pred HHHHhcCCCceE-EEEecCCCHHHHHHHHHHHcCCCEEEECCCCC------CCCCCE----EeccHHHHHHHh---CCCC
Confidence 655432 23332 22243343333444433 44699999999987 556554 389999999987 7899
Q ss_pred EEEEC
Q 043446 780 VLVVQ 784 (784)
Q Consensus 780 vLvvq 784 (784)
||||+
T Consensus 151 VLvVr 155 (155)
T 3dlo_A 151 VICIK 155 (155)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 20
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.17 E-value=5.8e-11 Score=110.87 Aligned_cols=134 Identities=12% Similarity=0.162 Sum_probs=88.1
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeee-cCCCcchhhccccccCCCCccccccchhhHHHHHHHHh
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVEL-TGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY 532 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~ 532 (784)
.|||+|+++++....+++.+..++. ..+.+++++|+++. +..... ........ ..++..++.++ .++.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~---~l~~~ 72 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAK--RHDAKLSIIHVDVNFSDLYTG-LIDVNMSS----MQDRISTETQK---ALLDL 72 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEECCGGGCCC-CEEHHHHH----HTTCCCCHHHH---HHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHH--hcCCEEEEEEEecCchhhhcc-ccccchHH----HHHHHHHHHHH---HHHHH
Confidence 3799999999999999999988884 35688999999843 211110 00000000 00001122233 33333
Q ss_pred hHccCceEE-EEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEec
Q 043446 533 EQHTGCVTV-QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVD 610 (784)
Q Consensus 533 ~~~~~~v~v-~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~ 610 (784)
.+. .++++ +..+..+ ++.+.|++.|++.++|+||||.| +...+ .+||+.++|++++||||+|+.+
T Consensus 73 ~~~-~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~~~--------~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 73 AES-VDYPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDFWS--------KLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HHH-SSSCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCCHH--------HHHHHHHHHHTTCCSEEEEEEC
T ss_pred HHH-cCCCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cchhh--------hhcchHHHHHhcCCCCEEEeeC
Confidence 333 34444 3445445 89999999999999999999999 63221 1689999999999999999743
No 21
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.16 E-value=1.8e-10 Score=108.17 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=93.8
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhh
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMK 703 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (784)
.+++|+||+||++.++.|+++|.++|++.+++++++|+.++....... .. ....+..+..++..++.++++.++
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~l~~~~~~ 77 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA---LD---PVLSELLDAEAAHAKDAMRQRQQF 77 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG---GH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc---cc---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999998753321000 00 000000023345566777877776
Q ss_pred ccCCC--ceEEEEEecCChHHHHHHHH-hc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCccc
Q 043446 704 IANDE--SVVYTEKLANNGEETLAAIR-SM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVS 779 (784)
Q Consensus 704 ~~~~~--~v~~~e~~v~~g~~~~~~i~-~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~s 779 (784)
....+ .+.+. +..|......++ .. +.++||+|||+|++ +++.+| -+|++.+.+... ++++
T Consensus 78 ~~~~g~~~~~~~---~~~g~~~~~I~~~~a~~~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~p 141 (146)
T 3s3t_A 78 VATTSAPNLKTE---ISYGIPKHTIEDYAKQHPEIDLIVLGATGT------NSPHRV----AVGSTTSYVVDH---APCN 141 (146)
T ss_dssp HTTSSCCCCEEE---EEEECHHHHHHHHHHHSTTCCEEEEESCCS------SCTTTC----SSCHHHHHHHHH---CSSE
T ss_pred HHhcCCcceEEE---EecCChHHHHHHHHHhhcCCCEEEECCCCC------CCcceE----EEcchHHHHhcc---CCCC
Confidence 64432 33332 223333333444 23 46799999999987 566555 389999999987 7899
Q ss_pred EEEEC
Q 043446 780 VLVVQ 784 (784)
Q Consensus 780 vLvvq 784 (784)
||||.
T Consensus 142 VlvV~ 146 (146)
T 3s3t_A 142 VIVIR 146 (146)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 22
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.13 E-value=4.5e-10 Score=104.35 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=89.1
Q ss_pred eeEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhh-hhHHHHHHHHHhh
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMS-EHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQR-QLDEEYINEFRMK 703 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la-~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 703 (784)
++|++|+||++.++.|+++|.++| ++.+++++++|+.++....... . ....+..++.+ +..++.++++.+.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~l~~~~~~ 74 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEA---V----LAAYDEIEMKEEEKAKLLTQKFSTF 74 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccccc---c----cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999 9999999999998753320000 0 00000002223 4556777777776
Q ss_pred ccCCCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEE
Q 043446 704 IANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVV 783 (784)
Q Consensus 704 ~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvv 783 (784)
..+. .+.+.. .+..|......++..+ ++||+|||+|++ +++.+| +|++.+.+... ++++||||
T Consensus 75 ~~~~-g~~~~~-~v~~g~~~~~I~~~a~-~~dliV~G~~~~------~~~~~~-----~Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 75 FTEK-GINPFV-VIKEGEPVEMVLEEAK-DYNLLIIGSSEN------SFLNKI-----FASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp HHTT-TCCCEE-EEEESCHHHHHHHHHT-TCSEEEEECCTT------STTSSC-----CCCTTCHHHHH---CSSCEEEE
T ss_pred HHHC-CCCeEE-EEecCChHHHHHHHHh-cCCEEEEeCCCc------chHHHH-----hCcHHHHHHhc---CCCCEEEe
Confidence 6442 222221 1222333333444444 899999999987 555554 49999999987 78999998
Q ss_pred C
Q 043446 784 Q 784 (784)
Q Consensus 784 q 784 (784)
.
T Consensus 138 ~ 138 (138)
T 3idf_A 138 K 138 (138)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.13 E-value=1.1e-10 Score=109.57 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=90.4
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCC-cCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhh
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEE-VEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMK 703 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (784)
++||+||+||++.++.|+++|.++|++.+++++++|+.++.. .......... . ...+..+..++..++.++++.+.
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~ 78 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARP-E--QLDIPDDALKDYATEIAVQAKTR 78 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCC-G--GGCCCTTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccCh-h--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999987432 0000000000 0 00000033445566777777665
Q ss_pred ccCC-Cce---EEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcc
Q 043446 704 IAND-ESV---VYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTV 778 (784)
Q Consensus 704 ~~~~-~~v---~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~ 778 (784)
.... ..+ ... ....+..+ ..++.. +.++||+|||+|++ +++.+| -+|++.+.+... +++
T Consensus 79 ~~~~g~~~~~~~~~-~~~g~~~~--~I~~~a~~~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~ 142 (147)
T 3hgm_A 79 ATELGVPADKVRAF-VKGGRPSR--TIVRFARKRECDLVVIGAQGT------NGDKSL----LLGSVAQRVAGS---AHC 142 (147)
T ss_dssp HHHTTCCGGGEEEE-EEESCHHH--HHHHHHHHTTCSEEEECSSCT------TCCSCC----CCCHHHHHHHHH---CSS
T ss_pred HHhcCCCccceEEE-EecCCHHH--HHHHHHHHhCCCEEEEeCCCC------ccccce----eeccHHHHHHhh---CCC
Confidence 5332 122 322 22333333 333322 45799999999987 566555 389999999987 789
Q ss_pred cEEEE
Q 043446 779 SVLVV 783 (784)
Q Consensus 779 svLvv 783 (784)
+||||
T Consensus 143 pVlvV 147 (147)
T 3hgm_A 143 PVLVV 147 (147)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 99997
No 24
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.04 E-value=1.1e-09 Score=104.69 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=90.3
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC-----CcCccc-CC--C-CCCCCCcccccchhhhhhHH
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAE-----EVEPAE-RQ--S-PDQNGLTVETENDNQRQLDE 694 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~-----~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~ 694 (784)
.+++|+||+||+++++.|+++|.++|+..+++++++|+.++. ...... .. . .. ..-...+..++.++..+
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS-VEEFENELKNKLTEEAK 82 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc-hhhhHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999998753 100000 00 0 00 00000000022234455
Q ss_pred HHHHHHHhhccCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCC
Q 043446 695 EYINEFRMKIANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSD 773 (784)
Q Consensus 695 ~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d 773 (784)
+.+++++++.... .+.+... +..|......++.. +.++||||||+|++ +++.+|- +|++.+.+...
T Consensus 83 ~~l~~~~~~~~~~-g~~~~~~-v~~G~~~~~I~~~a~~~~~dlIV~G~~g~------~~~~~~~----~GSv~~~vl~~- 149 (162)
T 1mjh_A 83 NKMENIKKELEDV-GFKVKDI-IVVGIPHEEIVKIAEDEGVDIIIMGSHGK------TNLKEIL----LGSVTENVIKK- 149 (162)
T ss_dssp HHHHHHHHHHHHT-TCEEEEE-EEEECHHHHHHHHHHHTTCSEEEEESCCS------SCCTTCS----SCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHc-CCceEEE-EcCCCHHHHHHHHHHHcCCCEEEEcCCCC------CCccceE----ecchHHHHHHh-
Confidence 6777776655332 2332222 22233222333322 45699999999987 5666653 89999999987
Q ss_pred CCCcccEEEEC
Q 043446 774 FASTVSVLVVQ 784 (784)
Q Consensus 774 ~~~~~svLvvq 784 (784)
++++||||.
T Consensus 150 --~~~pVlvv~ 158 (162)
T 1mjh_A 150 --SNKPVLVVK 158 (162)
T ss_dssp --CCSCEEEEC
T ss_pred --CCCCEEEEe
Confidence 789999984
No 25
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.03 E-value=3.4e-10 Score=107.65 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=90.9
Q ss_pred CcceeEEEecc--CCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHH
Q 043446 623 QVTHNIAVLFF--GGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEF 700 (784)
Q Consensus 623 ~~~~~I~v~~~--gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (784)
..+++|++|+| |+++++.|+++|.++|+..+++++++|+.++...... . ... .+..+..++..++.++++
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~----~---~~~-~~~~~~~~~~~~~~l~~~ 84 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF----D---SLT-PSKIQAKRKHVEDVVAEY 84 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC----C---SSH-HHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc----c---cCC-HHHHHHHHHHHHHHHHHH
Confidence 35789999999 9999999999999999999999999999875332000 0 000 000023344556677777
Q ss_pred HhhccCCC--ceEEEEEecCChHHHHHHHHh-c-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCC
Q 043446 701 RMKIANDE--SVVYTEKLANNGEETLAAIRS-M-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFAS 776 (784)
Q Consensus 701 ~~~~~~~~--~v~~~e~~v~~g~~~~~~i~~-~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~ 776 (784)
+++..+.+ .+.+.-. . +|......++. . +.++||||||+|++ ++++ + -+|++.+.+... +
T Consensus 85 ~~~~~~~g~~~~~~~v~-~-~g~~~~~I~~~~a~~~~~DlIV~G~~g~------~~~~-~----~~Gs~~~~vl~~---a 148 (156)
T 3fg9_A 85 VQLAEQRGVNQVEPLVY-E-GGDVDDVILEQVIPEFKPDLLVTGADTE------FPHS-K----IAGAIGPRLARK---A 148 (156)
T ss_dssp HHHHHHHTCSSEEEEEE-E-CSCHHHHHHHTHHHHHCCSEEEEETTCC------CTTS-S----SCSCHHHHHHHH---C
T ss_pred HHHHHHcCCCceEEEEE-e-CCCHHHHHHHHHHHhcCCCEEEECCCCC------Cccc-e----eecchHHHHHHh---C
Confidence 66553322 2333222 2 13333344443 2 45689999999987 5553 2 389999999987 7
Q ss_pred cccEEEEC
Q 043446 777 TVSVLVVQ 784 (784)
Q Consensus 777 ~~svLvvq 784 (784)
+++||||.
T Consensus 149 ~~PVlvV~ 156 (156)
T 3fg9_A 149 PISVIVVR 156 (156)
T ss_dssp SSEEEEEC
T ss_pred CCCEEEeC
Confidence 89999984
No 26
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.01 E-value=2.5e-10 Score=107.74 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=85.3
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcC--cccCCCCCCCCCcccccchhhhhhHHHHHHHHH
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVE--PAERQSPDQNGLTVETENDNQRQLDEEYINEFR 701 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (784)
.+++|+||+||++.++.|+++|.++|++.+++++++|+.++.... ....... ....+..++.++..++.++++.
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~ 80 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIP----LDTETTYDAMLDVEKQKLSQIG 80 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCC----SSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccC----cCHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999998643210 0000000 0001111344555667777777
Q ss_pred hhccCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccE
Q 043446 702 MKIANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSV 780 (784)
Q Consensus 702 ~~~~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~sv 780 (784)
++.... .+.. .....+..+ ..++.. +.++||+|||+|++ +++. | -+|++.+.+... ++++|
T Consensus 81 ~~~~~~-~~~~-~~~~g~~~~--~I~~~a~~~~~dliV~G~~~~------~~~~-~----~~Gs~~~~vl~~---~~~pV 142 (150)
T 3tnj_A 81 NTLGID-PAHR-WLVWGEPRE--EIIRIAEQENVDLIVVGSHGR------HGLA-L----LLGSTANSVLHY---AKCDV 142 (150)
T ss_dssp HHHTCC-GGGE-EEEESCHHH--HHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH---CSSEE
T ss_pred HHcCCC-cceE-EEecCCHHH--HHHHHHHHcCCCEEEEecCCC------CCcC-e----EecchHHHHHHh---CCCCE
Confidence 765322 1122 222334433 333322 44699999999987 5554 4 389999999987 78999
Q ss_pred EEEC
Q 043446 781 LVVQ 784 (784)
Q Consensus 781 Lvvq 784 (784)
|||.
T Consensus 143 lvv~ 146 (150)
T 3tnj_A 143 LAVR 146 (150)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9983
No 27
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.01 E-value=1.1e-09 Score=101.74 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=87.8
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhc
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKI 704 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (784)
+++|++|+||++.++.|+++|.++|+..+++++++|+.++... .. +. ....+..+..++..++.++++.++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~~----~~---~~~~~~~~~~~~~~~~~l~~~~~~- 72 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD-YL----GE---PFFEEALRRRLERAEGVLEEARAL- 72 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC----------------------CHHHHHHHHHHHHHHHH-
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc-cc----cc---cchHHHHHHHHHHHHHHHHHHHHH-
Confidence 4689999999999999999999999999999999999864221 00 00 000000023344566777777665
Q ss_pred cCCC-ceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEE
Q 043446 705 ANDE-SVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLV 782 (784)
Q Consensus 705 ~~~~-~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLv 782 (784)
.+. .+.+.. ...+..+ ..++.. +.++||+|||+|++ +++.++ -+|++.+.+... ++++|||
T Consensus 73 -~g~~~~~~~~-~~g~~~~--~I~~~a~~~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlv 135 (137)
T 2z08_A 73 -TGVPKEDALL-LEGVPAE--AILQAARAEKADLIVMGTRGL------GALGSL----FLGSQSQRVVAE---APCPVLL 135 (137)
T ss_dssp -HCCCGGGEEE-EESSHHH--HHHHHHHHTTCSEEEEESSCT------TCCSCS----SSCHHHHHHHHH---CSSCEEE
T ss_pred -cCCCccEEEE-EecCHHH--HHHHHHHHcCCCEEEECCCCC------chhhhh----hhccHHHHHHhc---CCCCEEE
Confidence 122 333332 2233333 333322 45699999999987 555554 389999999987 7899999
Q ss_pred EC
Q 043446 783 VQ 784 (784)
Q Consensus 783 vq 784 (784)
|.
T Consensus 136 v~ 137 (137)
T 2z08_A 136 VR 137 (137)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 28
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.00 E-value=1.5e-09 Score=101.39 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=83.2
Q ss_pred eeEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEeeecCCcCc-ccCCCCCCCCCcccccchhhhhhHHHHHHHHHh
Q 043446 626 HNIAVLFFGGPD--DREALAYAWRMSEHPGNNLTVMRFIAAEEVEP-AERQSPDQNGLTVETENDNQRQLDEEYINEFRM 702 (784)
Q Consensus 626 ~~I~v~~~gg~~--~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (784)
++|+||+||+++ ++.|+++|.++|++.+++++++|+.++..... ....... .....++.++...+.++++.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 76 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTA-----ELPGMDELREGSETQLKEIAK 76 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC---------------------CHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccc-----hhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999 99999999999999999999999987532100 0000000 000002222333344455544
Q ss_pred hccCC-CceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccE
Q 043446 703 KIAND-ESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSV 780 (784)
Q Consensus 703 ~~~~~-~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~sv 780 (784)
+.... .++.+.. ...+..+ ..++.. +.++||+|||+| + +|+.+| -+|++.+.+... ++++|
T Consensus 77 ~~~~~~~~v~~~~-~~g~~~~--~I~~~a~~~~~dliV~G~~-~------~~~~~~----~~Gs~~~~v~~~---~~~pV 139 (143)
T 3fdx_A 77 KFSIPEDRMHFHV-AEGSPKD--KILALAKSLPADLVIIASH-R------PDITTY----LLGSNAAAVVRH---AECSV 139 (143)
T ss_dssp TSCCCGGGEEEEE-EESCHHH--HHHHHHHHTTCSEEEEESS-C------TTCCSC----SSCHHHHHHHHH---CSSEE
T ss_pred HcCCCCCceEEEE-EecChHH--HHHHHHHHhCCCEEEEeCC-C------CCCeee----eeccHHHHHHHh---CCCCE
Confidence 43211 2233322 2233333 333322 446999999999 4 345444 389999999987 78999
Q ss_pred EEEC
Q 043446 781 LVVQ 784 (784)
Q Consensus 781 Lvvq 784 (784)
|||.
T Consensus 140 lvv~ 143 (143)
T 3fdx_A 140 LVVR 143 (143)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9984
No 29
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.00 E-value=6e-10 Score=103.55 Aligned_cols=130 Identities=8% Similarity=0.017 Sum_probs=86.1
Q ss_pred ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEee-ee-cCCCcchhhccccccCCCCccccccchhhHHHHHHHH
Q 043446 454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLV-EL-TGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 531 (784)
Q Consensus 454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlv-el-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 531 (784)
.|||+|+++++....+++.+..++. ..+.+++++|++ +. +... . .-....... ....++..++.++.++.++.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 79 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSE--KLGAELDILAVLEDVYNLER-A-NVTFGLPFP-PEIKEESKKRIERRLREVWE 79 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHT--TTCCEEEEEEECHHHHHHHH-H-HHHHCCCCC-THHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHH--HcCCeEEEEEEecccccccc-c-ccccCCCCC-hHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999984 467899999998 63 1100 0 000000000 01111112233444444322
Q ss_pred h-hHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 532 Y-EQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 532 ~-~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+ ... .+ ++++.+..+ ++.+.|++.|++.++|+||||.|++ |+.++|++++||||+|+
T Consensus 80 ~~~~~-~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 80 KLTGS-TE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHSC-CC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred Hhhcc-CC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence 1 122 44 666666554 8999999999999999999999854 56789999999999984
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.00 E-value=1.1e-09 Score=105.18 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=87.6
Q ss_pred cCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEE--EeeecCCc-CcccCCCCCCCCCcccccchhhhhhHHHHHH
Q 043446 622 NQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVM--RFIAAEEV-EPAERQSPDQNGLTVETENDNQRQLDEEYIN 698 (784)
Q Consensus 622 ~~~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (784)
....++|+||+||++.++.|+++|.++|+ .+++++++ |+.++... ...... .. +..+..++..++.++
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~l~ 84 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILK-DE-------SYKVTGTAPIYEILH 84 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC----------------------------CCTHHHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccc-cH-------HHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999 99999999 88753221 000000 00 000223344566677
Q ss_pred HHHhhccCCCceE-EEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCC
Q 043446 699 EFRMKIANDESVV-YTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFAS 776 (784)
Q Consensus 699 ~~~~~~~~~~~v~-~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~ 776 (784)
++++..... .+. +.. .+..|......++.. +.++||||||++++ +++.+| -+|++.+.+... +
T Consensus 85 ~~~~~~~~~-gv~~v~~-~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~------~~~~~~----~lGSva~~vl~~---a 149 (163)
T 1tq8_A 85 DAKERAHNA-GAKNVEE-RPIVGAPVDALVNLADEEKADLLVVGNVGL------STIAGR----LLGSVPANVSRR---A 149 (163)
T ss_dssp HHHHHHHTT-TCCEEEE-EEECSSHHHHHHHHHHHTTCSEEEEECCCC------CSHHHH----HTBBHHHHHHHH---T
T ss_pred HHHHHHHHc-CCCeEEE-EEecCCHHHHHHHHHHhcCCCEEEECCCCC------Ccccce----eeccHHHHHHHh---C
Confidence 766655432 222 221 222343333344432 46699999999987 566655 389999999987 7
Q ss_pred cccEEEEC
Q 043446 777 TVSVLVVQ 784 (784)
Q Consensus 777 ~~svLvvq 784 (784)
+++||||.
T Consensus 150 ~~PVlvV~ 157 (163)
T 1tq8_A 150 KVDVLIVH 157 (163)
T ss_dssp TCEEEEEC
T ss_pred CCCEEEEe
Confidence 89999984
No 31
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.00 E-value=3.6e-10 Score=119.30 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=92.7
Q ss_pred CCceEEEEeeCCCC-------hhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhH
Q 043446 452 SEFRVLVCVHTPRN-------VPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDH 524 (784)
Q Consensus 452 ~e~riLv~v~~~~~-------~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (784)
...||++|++.++. ...+++.+..++. ..+.+++++|+++.+..... .+. .... .+..++
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~--~~~------~~~~---~~~~~~ 199 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAG--LAKATLHVISAHPSPMLSSA--DPT------FQLS---ETIEAR 199 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH--HTTCEEEEEEEEC-----------C------HHHH---HHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHH--HcCCeEEEEEEecCcccccc--Cch------hHHH---HHHHHH
Confidence 35689999999998 7888998888873 35688999999975432111 000 0000 111223
Q ss_pred HHHHHHHhhHccCceE-EEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCC
Q 043446 525 IINAFENYEQHTGCVT-VQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPC 603 (784)
Q Consensus 525 i~~a~~~~~~~~~~v~-v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc 603 (784)
..+.++.+.++ .+++ ++..+..+ ++.+.|+++|++.++|+||||.|++.+..+.+ +||++++|++++||
T Consensus 200 ~~~~l~~~~~~-~g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~~ 269 (290)
T 3mt0_A 200 YREACRTFQAE-YGFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLES 269 (290)
T ss_dssp HHHHHHHHHHH-HTCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCSS
T ss_pred HHHHHHHHHHH-cCCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCCC
Confidence 33344444443 2442 34445555 89999999999999999999999987655544 99999999999999
Q ss_pred ceEEEecC
Q 043446 604 SVGILVDR 611 (784)
Q Consensus 604 ~V~ilv~r 611 (784)
||+++.++
T Consensus 270 pVLvv~~~ 277 (290)
T 3mt0_A 270 DVLVLKPD 277 (290)
T ss_dssp EEEEECCH
T ss_pred CEEEECCC
Confidence 99997443
No 32
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.98 E-value=1.7e-09 Score=104.41 Aligned_cols=146 Identities=9% Similarity=0.025 Sum_probs=89.1
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCC---CCCCCcccccchhhhhhHHHHHHHH
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSP---DQNGLTVETENDNQRQLDEEYINEF 700 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (784)
..++|+||+||+++++.|+++|.++|++.+++|+++|+.++........... ........+..++.++..++.++++
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999986432100000000 0000000000023344455667776
Q ss_pred HhhccC-CCceEE-EEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCc
Q 043446 701 RMKIAN-DESVVY-TEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFAST 777 (784)
Q Consensus 701 ~~~~~~-~~~v~~-~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~ 777 (784)
.+++.. +.++.. ......+..+ ..++.. +.++||||||+|++ +++.+| -+|.+.+.+... ++
T Consensus 84 ~~~~~~~g~~~~~~~~~~~g~~~~--~I~~~a~~~~~DlIV~G~~g~------~~~~~~----~~Gsv~~~vl~~---~~ 148 (170)
T 2dum_A 84 AEEVKRAFRAKNVRTIIRFGIPWD--EIVKVAEEENVSLIILPSRGK------LSLSHE----FLGSTVMRVLRK---TK 148 (170)
T ss_dssp HHHHHHHTTCSEEEEEEEEECHHH--HHHHHHHHTTCSEEEEESCCC------CC--TT----CCCHHHHHHHHH---CS
T ss_pred HHHHHHcCCceeeeeEEecCChHH--HHHHHHHHcCCCEEEECCCCC------Cccccc----eechHHHHHHHh---CC
Confidence 665432 223333 1222233333 333322 45699999999987 555554 389999999987 78
Q ss_pred ccEEEEC
Q 043446 778 VSVLVVQ 784 (784)
Q Consensus 778 ~svLvvq 784 (784)
++||||.
T Consensus 149 ~PVlvv~ 155 (170)
T 2dum_A 149 KPVLIIK 155 (170)
T ss_dssp SCEEEEC
T ss_pred CCEEEEc
Confidence 9999984
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.89 E-value=2.2e-09 Score=114.79 Aligned_cols=146 Identities=10% Similarity=0.066 Sum_probs=94.1
Q ss_pred CCceEEEEeeCCCC-------hhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhH
Q 043446 452 SEFRVLVCVHTPRN-------VPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDH 524 (784)
Q Consensus 452 ~e~riLv~v~~~~~-------~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (784)
...||++|+++++. ...+++.+..++.....+.+++++|+.+....... ... ......+..++..++
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~----~~~--~~~~~~~~~~~~~~~ 228 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIA----IEL--PDFDPNLYNNALRGQ 228 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCC----TTC--TTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhh----ccC--CcccHHHHHHHHHHH
Confidence 35689999998884 47778777777632111567999999976543211 000 000000000112233
Q ss_pred HHHHHHHhhHccCce-EEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCC
Q 043446 525 IINAFENYEQHTGCV-TVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPC 603 (784)
Q Consensus 525 i~~a~~~~~~~~~~v-~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc 603 (784)
..+.++.+.++ .++ .++..+..+ +..+.|++.|++.++||||||.|++.+..+ ..+|+++++|++++||
T Consensus 229 ~~~~l~~~~~~-~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~ 298 (319)
T 3olq_A 229 HLIAMKELRQK-FSIPEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSA------AFLGNTAEQLIDHIKC 298 (319)
T ss_dssp HHHHHHHHHHH-TTCCGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHH------HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHH-hCCCcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCcc------ccccHHHHHHHhhCCC
Confidence 34444555444 333 233444444 889999999999999999999998765443 3599999999999999
Q ss_pred ceEEEecCCC
Q 043446 604 SVGILVDRGL 613 (784)
Q Consensus 604 ~V~ilv~rg~ 613 (784)
||+++.++++
T Consensus 299 pVLvv~~~~~ 308 (319)
T 3olq_A 299 DLLAIKPDGF 308 (319)
T ss_dssp EEEEECCTTC
T ss_pred CEEEECCCCC
Confidence 9999866554
No 34
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.84 E-value=3.1e-09 Score=99.00 Aligned_cols=133 Identities=11% Similarity=0.110 Sum_probs=83.0
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec-CCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhh
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAA-EEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMK 703 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (784)
+++|+||+||++.++.|+++|.++|+..+++++++|+.++ ...... ... ....+..+..++..++.++++.++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 75 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTG---LID---VNMSSMQDRISTETQKALLDLAES 75 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCC---CEE---HHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhcc---ccc---cchHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999843 110000 000 000000011223455667777665
Q ss_pred ccCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEE
Q 043446 704 IANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLV 782 (784)
Q Consensus 704 ~~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLv 782 (784)
..- .+........+..+ ..++.. +.++||+|||+| + +++.+ +|.+.+.+... ++++|||
T Consensus 76 ~~~--~~~~~~~~~g~~~~--~I~~~a~~~~~dliV~G~~-~------~~~~~------lgs~~~~vl~~---~~~pVlv 135 (141)
T 1jmv_A 76 VDY--PISEKLSGSGDLGQ--VLSDAIEQYDVDLLVTGHH-Q------DFWSK------LMSSTRQVMNT---IKIDMLV 135 (141)
T ss_dssp SSS--CCCCEEEEEECHHH--HHHHHHHHTTCCEEEEEEC-C------CCHHH------HHHHHHHHHTT---CCSEEEE
T ss_pred cCC--CceEEEEecCCHHH--HHHHHHHhcCCCEEEEeCC-C------chhhh------hcchHHHHHhc---CCCCEEE
Confidence 421 11111122233333 333322 456999999999 6 34432 68999999977 7899999
Q ss_pred E
Q 043446 783 V 783 (784)
Q Consensus 783 v 783 (784)
|
T Consensus 136 v 136 (141)
T 1jmv_A 136 V 136 (141)
T ss_dssp E
T ss_pred e
Confidence 8
No 35
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.82 E-value=6e-09 Score=110.09 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=91.9
Q ss_pred CCCceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHH
Q 043446 451 DSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 530 (784)
Q Consensus 451 ~~e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 530 (784)
....+|++|+++++....+++.+..++. ..+.+++++|+.+... .++.++.+.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~-------------------------~~~~l~~~~ 220 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVK--KTGGELHIIHVSEDGD-------------------------KTADLRVME 220 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEECSSSC-------------------------CHHHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhh--hcCCEEEEEEEccCch-------------------------HHHHHHHHH
Confidence 3456899999999988999998888873 3567899999986322 012222233
Q ss_pred HhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 531 NYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 531 ~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
.+.+. .+++++..+..+ ++.+.|++.|++.++||||||.+++.+..+ ..+|+++++|++++||||+++
T Consensus 221 ~~l~~-~~~~~~~~~~~g---~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 221 EVIGA-EGIEVHVHIESG---TPHKAILAKREEINATTIFMGSRGAGSVMT------MILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHH-TTCCEEEEEECS---CHHHHHHHHHHHTTCSEEEEECCCCSCHHH------HHHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHH-cCCcEEEEEecC---CHHHHHHHHHHhcCcCEEEEeCCCCCCccc------eeeCcHHHHHHhcCCCCEEEE
Confidence 33333 566777766554 899999999999999999999998754433 359999999999999999996
No 36
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.79 E-value=2.4e-08 Score=96.71 Aligned_cols=143 Identities=8% Similarity=0.101 Sum_probs=79.9
Q ss_pred cceeEEEeccCCc---------chHHHHHHHHHHh-cC--CCeEEEEEEeeecCCcCcc--cCCCCCCCCCcccccchhh
Q 043446 624 VTHNIAVLFFGGP---------DDREALAYAWRMS-EH--PGNNLTVMRFIAAEEVEPA--ERQSPDQNGLTVETENDNQ 689 (784)
Q Consensus 624 ~~~~I~v~~~gg~---------~~~~al~~a~~la-~~--~~~~ltv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 689 (784)
..++|+||+||++ .++.|+++|.+++ +. .+++|+++|+.+....... ....... -...+..++.
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 81 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASP--EDFRDMRQSN 81 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSH--HHHHHHTTSH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCH--HHHHHHHHHH
Confidence 4679999999999 9999999999986 54 6999999999853211000 0000000 0000000112
Q ss_pred hhhHHHHHHHHHhhccCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhh
Q 043446 690 RQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDL 768 (784)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~ 768 (784)
++..++.++++.+.+... .+.+.. .+..|......++.. +.++||||||+|++ +++.+| -+|.+.+.
T Consensus 82 ~~~~~~~l~~~~~~~~~~-g~~~~~-~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~------~~~~~~----~~Gsva~~ 149 (175)
T 2gm3_A 82 KAKGLHLLEFFVNKCHEI-GVGCEA-WIKTGDPKDVICQEVKRVRPDFLVVGSRGL------GRFQKV----FVGTVSAF 149 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCEEEE-EEEESCHHHHHHHHHHHHCCSEEEEEECCC------C------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCceEE-EEecCCHHHHHHHHHHHhCCCEEEEeCCCC------Chhhhh----hcCchHHH
Confidence 233456677766554321 233222 222333333333433 34699999999987 566655 38999999
Q ss_pred hhcCCCCCcccEEEE
Q 043446 769 LASSDFASTVSVLVV 783 (784)
Q Consensus 769 las~d~~~~~svLvv 783 (784)
+... ++++||||
T Consensus 150 vl~~---a~~pVlvv 161 (175)
T 2gm3_A 150 CVKH---AECPVMTI 161 (175)
T ss_dssp HHHH---CSSCEEEE
T ss_pred HHhC---CCCCEEEE
Confidence 9987 78999998
No 37
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.78 E-value=1.2e-08 Score=106.15 Aligned_cols=141 Identities=21% Similarity=0.163 Sum_probs=88.4
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCC-ccccc----chhhhhhHHHHHHHH
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGL-TVETE----NDNQRQLDEEYINEF 700 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~ 700 (784)
++|+||+||++.++.|+++|.++|++.+++++++|+.+......... .+..... ...+. .+..++..++.++++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPEL-LDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHH-C-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999986422100000 0000000 00000 012234445667776
Q ss_pred HhhccCC-CceEEEEEecCChHHHHHHHHhccCCccEEEEcccCCCCCcccc-CcCccCCCCccccchhhhhcCCCCCcc
Q 043446 701 RMKIAND-ESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTD-GLTDWSECPELGAIGDLLASSDFASTV 778 (784)
Q Consensus 701 ~~~~~~~-~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~-gl~~w~e~~elG~igd~las~d~~~~~ 778 (784)
.+..... ..+.+. +..|......++. +.++||+|||+|++ + ++.+| -+|++.+.+... +++
T Consensus 80 ~~~~~~~g~~~~~~---~~~g~~~~~I~~~-~~~~dliV~G~~g~------~~~~~~~----~~Gs~~~~v~~~---a~~ 142 (268)
T 3ab8_A 80 RQSALAAGVAVEAV---LEEGVPHEAILRR-ARAADLLVLGRSGE------AHGDGFG----GLGSTADRVLRA---SPV 142 (268)
T ss_dssp HHHHHHTTCCEEEE---EEEECHHHHHHHH-HTTCSEEEEESSCT------TSCTTCC----SCCHHHHHHHHH---CSS
T ss_pred HHHHHhCCCCeEEE---EecCCHHHHHHhh-ccCCCEEEEeccCC------Ccccccc----ccchhHHHHHHh---CCC
Confidence 6654322 223332 2234333344444 77899999999987 4 55554 389999999987 789
Q ss_pred cEEEEC
Q 043446 779 SVLVVQ 784 (784)
Q Consensus 779 svLvvq 784 (784)
+||||.
T Consensus 143 PVlvv~ 148 (268)
T 3ab8_A 143 PVLLAP 148 (268)
T ss_dssp CEEEEC
T ss_pred CEEEEC
Confidence 999984
No 38
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.75 E-value=1.3e-08 Score=108.27 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=91.3
Q ss_pred CceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHH-HHHHH
Q 043446 453 EFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHII-NAFEN 531 (784)
Q Consensus 453 e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~a~~~ 531 (784)
..+|++|+++++....+++.+..++. ..+.+++++|+.+..... . . ..... ++..++.++.+ +.++.
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~-~------~--~~~~~-~~~~~~~~~~l~~~~~~ 238 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEAS--RRNVDLVALHAWSDVDVS-E------W--PGIDW-PATQSMAEQVLAERLAG 238 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHH--HTTCCEEEEEESCSSCCT-T------C--SSCCH-HHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHH--hcCCEEEEEEEeeccccc-C------C--CcccH-HHHHHHHHHHHHHHHHH
Confidence 35899999999988899998888874 345779999998643211 0 0 00000 00011222222 23333
Q ss_pred hhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEE
Q 043446 532 YEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGIL 608 (784)
Q Consensus 532 ~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~il 608 (784)
+.+...++.++..+..+ ++.+.|++.|+ ++|+||||.|++++..+.+ +||++++|++++||||+++
T Consensus 239 ~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv 304 (309)
T 3cis_A 239 WQERYPNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVA 304 (309)
T ss_dssp HHHHCTTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEE
T ss_pred HHhhCCCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEe
Confidence 33221367777776655 89999999997 8999999999987665554 8999999999999999996
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.72 E-value=5.9e-08 Score=89.91 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=79.1
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee-ec-C-Cc-CcccCCCCCCCCCcccccchhhhhhHHHHHHH
Q 043446 624 VTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFI-AA-E-EV-EPAERQSPDQNGLTVETENDNQRQLDEEYINE 699 (784)
Q Consensus 624 ~~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~-~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (784)
.+++|+||+||++.++.|+++|.++|+..+++++++|+. +. . .. .... .... + .+..++.++..++.+++
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~-~~~~----~-~~~~~~~~~~~~~~l~~ 76 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTF-GLPF----P-PEIKEESKKRIERRLRE 76 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHH-CCCC----C-THHHHHHHHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEeccccccccccccc-CCCC----C-hHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999998 52 1 00 0000 0000 0 00002223445566666
Q ss_pred HHhhc--cCCCceEEEEEecCChHHHHHHHHhc-cCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCC
Q 043446 700 FRMKI--ANDESVVYTEKLANNGEETLAAIRSM-DHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFAS 776 (784)
Q Consensus 700 ~~~~~--~~~~~v~~~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~ 776 (784)
+ +++ ...+.+.+. +..|......++.. +.++||+|||+|++ ++.+.+... +
T Consensus 77 ~-~~~~~~~~~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~g~-------------------sv~~~vl~~---a 130 (138)
T 1q77_A 77 V-WEKLTGSTEIPGVE---YRIGPLSEEVKKFVEGKGYELVVWACYPS-------------------AYLCKVIDG---L 130 (138)
T ss_dssp H-HHHHHSCCCCCCEE---EECSCHHHHHHHHHTTSCCSEEEECSCCG-------------------GGTHHHHHH---S
T ss_pred H-HHHhhccCCcceEE---EEcCCHHHHHHHHHHhcCCCEEEEeCCCC-------------------chHHHHHHh---C
Confidence 6 542 222234333 22333333344433 45799999999864 556666665 6
Q ss_pred cccEEEEC
Q 043446 777 TVSVLVVQ 784 (784)
Q Consensus 777 ~~svLvvq 784 (784)
+++||||.
T Consensus 131 ~~PVlvv~ 138 (138)
T 1q77_A 131 NLASLIVK 138 (138)
T ss_dssp SSEEEECC
T ss_pred CCceEeeC
Confidence 78999874
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.80 E-value=0.021 Score=60.67 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhccChhHHHhchhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH---hhc
Q 043446 102 MANVGLLYFLFLVGVEMDISAIRRTGKK---ALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVAL---SVT 175 (784)
Q Consensus 102 l~~igl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~~l---s~T 175 (784)
.....+.+.||..|++++++++++..++ ........+++.=++++.+++.+ +.+. .+..|.++ +++
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~---~l~~-----~~~~Glil~~~~P~ 115 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL---NLPA-----EIAVGVILVGCCPG 115 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHT---TCCH-----HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh---CCCh-----HHHHHHHHHhcCCc
Confidence 3456788999999999999999965443 33223333333212344444433 2221 22233322 222
Q ss_pred cHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043446 176 AFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGE 221 (784)
Q Consensus 176 s~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~ 221 (784)
.. .+.++..+- +.+ ..++.+...++.+++.+.+-+...+..
T Consensus 116 ~~--~s~v~t~~a--~Gd-~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 116 GT--ASNVMTYLA--RGN-VALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp CT--HHHHHHHHT--TCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh--HHHHHHHHh--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 21 222333322 222 356777788888888877776665543
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=97.40 E-value=0.0077 Score=61.34 Aligned_cols=221 Identities=14% Similarity=0.104 Sum_probs=144.6
Q ss_pred CceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHh
Q 043446 453 EFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY 532 (784)
Q Consensus 453 e~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~ 532 (784)
+-++||+...|..-..+++++..+... ..-+++.++.....+.. + .++ +++++.|
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~---~G~ltv~~i~p~~~~~~---------------l------~~q-l~~l~~~ 74 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYP---KGSVKLLGLAGNTDKEN---------------L------LSQ-LPSISEG 74 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTT---TCEEEEEECC---CTTC---------------H------HHH-HHHHHHH
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccC---ceeEEEEEEccCCCccH---------------H------HHH-HHHHHHH
Confidence 458999999999899999999999854 35688888863221110 0 122 2566666
Q ss_pred hHccCceEEEEEEEecCCCChHHHHHHHHHh-----cCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEE
Q 043446 533 EQHTGCVTVQPLTAISPYSSMHEDICNLAED-----KRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGI 607 (784)
Q Consensus 533 ~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~-----~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~i 607 (784)
-++ .++..-..+..+ .+..+++....+. .+++.|+||+..+.. .+..+..+.++ ++++.-.|.+
T Consensus 75 l~~-r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~-~~~~~~nVli 143 (294)
T 3g40_A 75 FQE-EGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRK-ASMYRMGVLL 143 (294)
T ss_dssp HHH-TTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHH-HHHTTCEEEE
T ss_pred HHh-CCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHH-HHHhCceEEE
Confidence 665 676555554444 5788999888776 568899999886531 22347888877 4555788888
Q ss_pred EecCCCCCCccccccCcceeEEEecc---------C-CcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCC
Q 043446 608 LVDRGLNGSTRLAANQVTHNIAVLFF---------G-GPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQ 677 (784)
Q Consensus 608 lv~rg~~~~~~~~~~~~~~~I~v~~~---------g-g~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~ 677 (784)
+.+.+.. .....++|=+=.. | ..+-.-++-+|-.+.++.++++.+..+++.
T Consensus 144 l~~~~~~------~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------------- 204 (294)
T 3g40_A 144 FSKHPQA------GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------------- 204 (294)
T ss_dssp EECCTTT------TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-------------
T ss_pred EecCCcc------CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-------------
Confidence 8544322 1122355644422 2 256777888999999999999999999853
Q ss_pred CCCcccccchhhhhhHHHHHHHHHhhccCCCceEEEEEecCChHHHHHHHHhccCCccEEEEcccCC
Q 043446 678 NGLTVETENDNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQG 744 (784)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~ 744 (784)
+++++.++++++++.+..+-.... + ++.+ +-.+++++. .+.||+++|-...
T Consensus 205 ---------e~a~~~a~~~l~~Lv~~~Ri~a~~-~--vv~~---~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 205 ---------AIQAQAAENFLQSLAELARIPNVK-M--QVLR---ENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTCCSCE-E--EEES---SCTTTSSSC-CCCSEEEEECCSS
T ss_pred ---------HHHHHHHHHHHHHHHHHhcCCceE-E--EecC---chHHHHhhC-cCCCEEEEcCCCC
Confidence 566788899999999887654433 2 1222 233455654 6689999998654
No 42
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=80.02 E-value=7.2 Score=43.07 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=63.8
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhhc
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKI 704 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (784)
.++|+|++.||+|+-..+.++.++.+..+.++.++|+..... ..+.+.+.++.+++++++
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr--------------------g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR--------------------GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC--------------------THHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC--------------------ccccHHHHHHHHHHHHHc
Confidence 468999999999999999999998888889999999964211 122345667888888776
Q ss_pred cCCCceEEEEEecCC---------hHHH-HHH-----HHhc--cCCccEEEEcccCC
Q 043446 705 ANDESVVYTEKLANN---------GEET-LAA-----IRSM--DHSHDLFIVGRGQG 744 (784)
Q Consensus 705 ~~~~~v~~~e~~v~~---------g~~~-~~~-----i~~~--~~~~DLiivG~~~~ 744 (784)
. +.+....++. +.|. ... +.+. +.++|-++.|+|.+
T Consensus 78 g----i~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 78 R----ILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp T----CEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred C----CcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 2 4444333321 1122 221 1221 34699999999855
No 43
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=75.02 E-value=5.7 Score=43.45 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=61.7
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcC-CCeEEEEEEeeecCCcCcccCCCCCCCCCcccccchhhhhhHHHHHHHHHhh
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEH-PGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMK 703 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~-~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (784)
.++|+|.+.||+|+-..+.++.++.+. .+.+++++|+..... .+.+.+.++.+++.++
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr---------------------~~s~~~~~~v~~~~~~ 71 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS---------------------ANADAWVTHCENVCQQ 71 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC---------------------SSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC---------------------cccHHHHHHHHHHHHH
Confidence 358999999999999999999988877 789999999964211 1123356777777776
Q ss_pred ccCCCceEEEEEecCC-----h-HHHHH-----HHHhccCCccEEEEcccCC
Q 043446 704 IANDESVVYTEKLANN-----G-EETLA-----AIRSMDHSHDLFIVGRGQG 744 (784)
Q Consensus 704 ~~~~~~v~~~e~~v~~-----g-~~~~~-----~i~~~~~~~DLiivG~~~~ 744 (784)
+. +.+....++. + ++... .+.+...++|-++.|+|.+
T Consensus 72 lg----i~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 72 WQ----VPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp TT----CCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred cC----CcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 63 2222222211 1 22222 2333344599999999854
No 44
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=73.79 E-value=1 Score=29.94 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhcC
Q 043446 163 TFVLFLGVALSVTAFPVLARILAELK 188 (784)
Q Consensus 163 ~~al~lg~~ls~Ts~~vv~~il~el~ 188 (784)
..++++|+++|+|++..+..++++++
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~ 29 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIH 29 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcC
Confidence 34788999999999999999999988
No 45
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=72.33 E-value=15 Score=38.24 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=33.8
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeE-EEEEEeee
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNN-LTVMRFIA 663 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~-ltv~~~~~ 663 (784)
.++++|.+.||+|+--.+.++.+..+..+.+ ++++|+..
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~ 63 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNH 63 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEEC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEEC
Confidence 3589999999999999999998887777778 99999864
No 46
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=66.19 E-value=66 Score=33.48 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=67.2
Q ss_pred HHHHhhcCC-CcchhHHHHHHHHHHHhhhhHHHHHHhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 043446 295 FVFGLVIPN-GPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGT-STWMITLLVIILACAGKIAGTLLVSLMYQM 372 (784)
Q Consensus 295 f~aGl~l~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~ 372 (784)
.+.|...|+ ... ++... ...+++.+...|++++..++... ..+.......+.-++..++.++..++.++.
T Consensus 28 ~~lg~~~P~~~~~-------~~~~i-~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFKW-------AGPYI-PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTGG-------GGGGH-HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhhh-------hHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356666776 221 22333 45566778899999999887632 234444455556667778888888888876
Q ss_pred CchhHHHHHH-HhcchhHHHHHHHHhhccCCcCChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 043446 373 PIREGVTLGL-LMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIY 431 (784)
Q Consensus 373 ~~~~~~~lg~-~m~~rG~~~l~~~~~~~~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~ 431 (784)
+......+-+ ..+|-|..+.++...+. | |.+.-..++....+.+.++.|+...++
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t~~a~--G--d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMTYLAR--G--NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHHHHhC--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6433222222 23455555555443332 1 222222232333333455556665555
No 47
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=63.29 E-value=9.7 Score=39.81 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=31.7
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
.+++|.|.||+|+--.|.++.+.....+.++.++|+..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDt 84 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDT 84 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECC
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEEC
Confidence 47999999999999999999988765556777888854
No 48
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=56.31 E-value=0.36 Score=32.09 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHHHHHHhchhhhHHHHHHHhhcCC
Q 043446 277 MISGFITDAIGTHSVFGAFVFGLVIPN 303 (784)
Q Consensus 277 l~~~~~a~~~G~~~~lgaf~aGl~l~~ 303 (784)
++++.++|.+++|++++.+++|+.+++
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 345678999999999999999999876
No 49
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=56.21 E-value=44 Score=33.37 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=24.9
Q ss_pred eccCCcchHHHHHHHHHHhcCCCe--EEEEEEee
Q 043446 631 LFFGGPDDREALAYAWRMSEHPGN--NLTVMRFI 662 (784)
Q Consensus 631 ~~~gg~~~~~al~~a~~la~~~~~--~ltv~~~~ 662 (784)
+..=.|.|++|++.|.|+.+. +. +++++.+=
T Consensus 32 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G 64 (252)
T 1efp_B 32 KMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIG 64 (252)
T ss_dssp CEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEE
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence 444468999999999999987 65 88887764
No 50
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=55.45 E-value=55 Score=31.47 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=27.7
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
.+|+|.+.||+|+--.|.++.+.. -++.++|+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeC
Confidence 489999999999999999888874 3467788754
No 51
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=53.42 E-value=27 Score=29.31 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCC
Q 043446 552 SMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRG 612 (784)
Q Consensus 552 ~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg 612 (784)
...+.|.++++|++++.||+|...+. +|..+......+.+.+++-++ +.||-. +|..
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV~~-~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEVEL-WDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEEEE-ECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCEEE-ECCC
Confidence 44578999999999999999988663 343333333467777887777 899877 5553
No 52
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=52.62 E-value=35 Score=35.15 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=56.7
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhc------------------CCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccch
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMSE------------------HPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETEND 687 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la~------------------~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (784)
.+|+|.|.||+|+--.|.++.+... .++.++.++++.....
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--------------------- 112 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--------------------- 112 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC---------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC---------------------
Confidence 4799999999999999999877631 1245677787754222
Q ss_pred hhhhhHHHHHHHHHhhccCCCceEEEEEecC----Ch-HHHHHHHHhccCCccEEEEcccCCC
Q 043446 688 NQRQLDEEYINEFRMKIANDESVVYTEKLAN----NG-EETLAAIRSMDHSHDLFIVGRGQGV 745 (784)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~v~~~e~~v~----~g-~~~~~~i~~~~~~~DLiivG~~~~~ 745 (784)
..+..++.+++.+++. +........ .+ .+......+.....+-+++|.|..+
T Consensus 113 --fpet~~fv~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 113 --FPTLENFVLETSERYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp --CHHHHHHHHHHHHHTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred --CHHHHHHHHHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 2346688888887762 333222111 11 1222222233445789999998764
No 53
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=50.85 E-value=38 Score=34.13 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=25.8
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCe--EEEEEEee
Q 043446 630 VLFFGGPDDREALAYAWRMSEHPGN--NLTVMRFI 662 (784)
Q Consensus 630 v~~~gg~~~~~al~~a~~la~~~~~--~ltv~~~~ 662 (784)
++..=.|.|.+|++.|.+++++.+. +++++.+=
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G 65 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVG 65 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEES
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 3444478999999999999987665 88887664
No 54
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=49.38 E-value=46 Score=33.30 Aligned_cols=32 Identities=19% Similarity=0.005 Sum_probs=25.4
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCe--EEEEEEee
Q 043446 630 VLFFGGPDDREALAYAWRMSEHPGN--NLTVMRFI 662 (784)
Q Consensus 630 v~~~gg~~~~~al~~a~~la~~~~~--~ltv~~~~ 662 (784)
+++.=.|.|++|++.|.|+.+. +. +++++.+=
T Consensus 34 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G 67 (255)
T 1efv_B 34 VKHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCG 67 (255)
T ss_dssp CCEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence 3444468999999999999987 65 88887764
No 55
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=46.47 E-value=11 Score=26.16 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCccE
Q 043446 541 VQPLTAISPYSSMHEDICNLAEDKRVAL 568 (784)
Q Consensus 541 v~~~~~vs~~~~~~~~I~~~A~~~~~dl 568 (784)
|.-...++| +|.++|.++|+|++.|-
T Consensus 12 vslhllvdp--dmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDP--DMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECH--HHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCC--chhHHHHHHHHHccchh
Confidence 344455664 89999999999998773
No 56
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=43.95 E-value=1.5e+02 Score=28.01 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.0
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 625 THNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 625 ~~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
..++++.+.||.|+--++.++.+ .+.+++.+++..
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~ 40 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINF 40 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEEC
T ss_pred CCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeC
Confidence 36899999999999988877654 467888888864
No 57
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=35.01 E-value=1.3e+02 Score=29.53 Aligned_cols=84 Identities=11% Similarity=0.001 Sum_probs=56.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccc
Q 043446 542 QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAA 621 (784)
Q Consensus 542 ~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~ 621 (784)
++++..+|.+....+.++...+.++|.|.+|-. +|. +....-.+.+++-+ .+.|+.++.... . + -
T Consensus 13 ~h~~~~DPdk~~~~~~l~~~~~~GtDaI~vGgs-----~gv---t~~~~~~~v~~ik~-~~~Piil~p~~~-~---~--~ 77 (235)
T 3w01_A 13 RHIFKLDPAKHISDDDLDAICMSQTDAIMIGGT-----DDV---TEDNVIHLMSKIRR-YPLPLVLEISNI-E---S--V 77 (235)
T ss_dssp CEEEEECTTSCCCHHHHHHHHTSSCSEEEECCS-----SCC---CHHHHHHHHHHHTT-SCSCEEEECCCS-T---T--C
T ss_pred eEEEeECCCCcCCHHHHHHHHHcCCCEEEECCc-----CCc---CHHHHHHHHHHhcC-cCCCEEEecCCH-H---H--h
Confidence 578899998876777778788999999999964 232 22336677777666 888998875432 1 1 1
Q ss_pred cCcceeEEEeccCCcchHH
Q 043446 622 NQVTHNIAVLFFGGPDDRE 640 (784)
Q Consensus 622 ~~~~~~I~v~~~gg~~~~~ 640 (784)
....+-+++|-.-...+.+
T Consensus 78 ~~gaD~il~pslln~~~~~ 96 (235)
T 3w01_A 78 MPGFDFYFVPTVLNSTDVA 96 (235)
T ss_dssp CTTCSEEEEEEETTBSSGG
T ss_pred hcCCCEEEEccccCCCCcc
Confidence 2246778888665444433
No 58
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=30.24 E-value=1.7 Score=27.63 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=19.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHH
Q 043446 190 INTELGRIAMSSALINDMCAWVLL 213 (784)
Q Consensus 190 ~~s~~g~l~l~~a~i~D~~~~~ll 213 (784)
.+.++-.++.++|++||..+++++
T Consensus 2 V~~~L~~lvfGESllNDavaiVlf 25 (28)
T 2htg_A 2 INELLHILVFGESLLNDAVTVVLY 25 (28)
T ss_dssp CSSTTHHHHTTTTTTTTTTTTTTT
T ss_pred CCceEEEEEEeeeeecccEEEEEE
Confidence 466788899999999999987765
No 59
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=30.11 E-value=73 Score=33.79 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=23.4
Q ss_pred EEEecCChHHHHHHHHhccCCccEEEEccc
Q 043446 713 TEKLANNGEETLAAIRSMDHSHDLFIVGRG 742 (784)
Q Consensus 713 ~e~~v~~g~~~~~~i~~~~~~~DLiivG~~ 742 (784)
.+.+++||.+.++...+..+.||+||+=-.
T Consensus 264 v~vii~Da~~fl~~~~~~~~~yDvIIvDl~ 293 (381)
T 3c6k_A 264 YQVLIEDCIPVLKRYAKEGREFDYVINDLT 293 (381)
T ss_dssp EEEEESCHHHHHHHHHHHTCCEEEEEEECC
T ss_pred eeeehHHHHHHHHhhhhccCceeEEEECCC
Confidence 567799999888766666667999999643
No 60
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=29.50 E-value=80 Score=28.74 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=31.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCccEEEEcccccc
Q 043446 542 QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQ 577 (784)
Q Consensus 542 ~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~ 577 (784)
+-...+-|...++..|.++|++.++|+||-|..+..
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGED 126 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 445567788999999999999999999999988754
No 61
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=29.34 E-value=50 Score=33.06 Aligned_cols=37 Identities=8% Similarity=-0.106 Sum_probs=30.8
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA 663 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la~~~~~~ltv~~~~~ 663 (784)
.+++|.+.||+|+--.|.++.++... +.++.++++..
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDt 78 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDT 78 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecC
Confidence 47999999999999999999888765 56677888754
No 62
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=28.55 E-value=1.2e+02 Score=29.55 Aligned_cols=85 Identities=7% Similarity=-0.028 Sum_probs=55.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccc
Q 043446 542 QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAA 621 (784)
Q Consensus 542 ~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~ 621 (784)
++++.++|.+...++.++.+.+.++|.|.+|... |. +....-.+.+++-+ .+.|+.++.... . + -
T Consensus 8 ~h~~~iDPdk~~~~~~~~~~~~~GtD~i~vGGs~-----gv---t~~~~~~~v~~ik~-~~~Pvvlfp~~~-~---~--v 72 (228)
T 3vzx_A 8 KHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSD-----GV---TEDNVLRMMSKVRR-FLVPCVLEVSAI-E---A--I 72 (228)
T ss_dssp CEEEEECTTSCCCTTHHHHHHTSSCSEEEECCCS-----CC---CHHHHHHHHHHHTT-SSSCEEEECSCG-G---G--C
T ss_pred eEEEeECCCCCCCHHHHHHHHHcCCCEEEECCcC-----CC---CHHHHHHHHHHhhc-cCCCEEEeCCCH-H---H--c
Confidence 5678899988655666777779999999999642 22 22346677777666 888988874332 1 1 1
Q ss_pred cCcceeEEEeccCCcchHHH
Q 043446 622 NQVTHNIAVLFFGGPDDREA 641 (784)
Q Consensus 622 ~~~~~~I~v~~~gg~~~~~a 641 (784)
....+-+++|-.-...+.+=
T Consensus 73 ~~gaD~~l~pslln~~~~~~ 92 (228)
T 3vzx_A 73 VPGFDLYFIPSVLNSKNADW 92 (228)
T ss_dssp CSCCSEEEEEEETTBSSGGG
T ss_pred cccCCEEEEeeecCCCCcch
Confidence 22456788886555444443
No 63
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=28.06 E-value=4e+02 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEE
Q 043446 556 DICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGI 607 (784)
Q Consensus 556 ~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~i 607 (784)
.+.++.++.++|.||.+.... ...-..+++++...|+..
T Consensus 63 ~~~~l~~~~~v~~iig~~~s~-------------~~~~~~~~~~~~~iP~v~ 101 (358)
T 3hut_A 63 IARAFVDDPRVVGVLGDFSST-------------VSMAAGSIYGKEGMPQLS 101 (358)
T ss_dssp HHHHHHHCTTEEEEEECSSHH-------------HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhccCCcEEEEcCCCcH-------------HHHHHHHHHHHCCCcEEe
Confidence 445566689999998765421 111223566677788654
No 64
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=23.81 E-value=3.1e+02 Score=28.03 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=53.5
Q ss_pred eeEEEeccCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCCcCcccCCCCCCCCCcccccch
Q 043446 626 HNIAVLFFGGPDDREALAYAWRMS-E-----------------HPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETEND 687 (784)
Q Consensus 626 ~~I~v~~~gg~~~~~al~~a~~la-~-----------------~~~~~ltv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (784)
.++.+.|.||+|+--.|.++.+.- + .+...+.|+++......
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~F-------------------- 118 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTF-------------------- 118 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCC--------------------
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCC--------------------
Confidence 469999999999999999987742 1 12246777777543221
Q ss_pred hhhhhHHHHHHHHHhhccCCCceEEEEEecCCh---HHHHHHHHhccCCccEEEEcccCC
Q 043446 688 NQRQLDEEYINEFRMKIANDESVVYTEKLANNG---EETLAAIRSMDHSHDLFIVGRGQG 744 (784)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~v~~~e~~v~~g---~~~~~~i~~~~~~~DLiivG~~~~ 744 (784)
.+-.++.+++.+++. +.........+ .+....+++.+..+|.+++|.|+.
T Consensus 119 ---pET~ef~d~~~~~yg----L~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 119 ---KTLENFIEETSLRYS----LSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp ---HHHHHHHHHHHHHTT----EEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred ---HHHHHHHHHHHHHhC----CcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 224578888887763 22221111111 122223334454689999999987
No 65
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=22.81 E-value=4.3e+02 Score=26.75 Aligned_cols=79 Identities=9% Similarity=0.000 Sum_probs=37.6
Q ss_pred hcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccccCcceeEEEeccCCcchHHHH
Q 043446 563 DKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREAL 642 (784)
Q Consensus 563 ~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~~al 642 (784)
+.++|.||.+.... ...-...++++...|+.. ........ ........+. ..+..+..++-
T Consensus 80 ~~~v~~iig~~~s~-------------~~~~~~~~~~~~~iP~v~-~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~ 140 (375)
T 4evq_A 80 SEKADVLIGTVHSG-------------VAMAMVKIAREDGIPTIV-PNAGADII---TRAMCAPNVF--RTSFANGQIGR 140 (375)
T ss_dssp CSCCSEEEECSSHH-------------HHHHHHHHHHHHCCCEEE-SSCCCGGG---GTTTCCTTEE--ESSCCHHHHHH
T ss_pred cCCceEEEcCCccH-------------HHHHHHHHHHHcCceEEe-cCCCChhh---cccCCCCCEE--EeeCChHhHHH
Confidence 35899998875421 111233566777778654 33221100 0000011111 12223344555
Q ss_pred HHHHHHhcCCCeEEEEEE
Q 043446 643 AYAWRMSEHPGNNLTVMR 660 (784)
Q Consensus 643 ~~a~~la~~~~~~ltv~~ 660 (784)
..+..+.+...-++.+++
T Consensus 141 ~~~~~l~~~g~~~ia~i~ 158 (375)
T 4evq_A 141 ATGDAMIKAGLKKAVTVT 158 (375)
T ss_dssp HHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCcEEEEEe
Confidence 556666666666777774
No 66
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=20.66 E-value=78 Score=28.33 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecC
Q 043446 552 SMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDR 611 (784)
Q Consensus 552 ~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~r 611 (784)
...+.|.+++++++++.||+|...+. +|.-+......+.+.+++-++-+.||-..=+|
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 34689999999999999999987653 34332223345677777766668898884344
No 67
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=20.07 E-value=91 Score=28.26 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCC
Q 043446 550 YSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRG 612 (784)
Q Consensus 550 ~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg 612 (784)
.....+.|.++.++.+++.|++|.... .+|.-.......+.++.++.++.++||.. +|..
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~--~nGt~~~~~~~ar~f~~~L~~~~~lpV~~-vDEr 99 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN--MNGTVGPRGEASQTFAKVLETTYNVPVVL-WDER 99 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC--BTTBCCHHHHHHHHHHHHHHHHHCSCEEE-ECCS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec--CCcchhHHHHHHHHHHHHHHHhhCCCEEE-ecCC
Confidence 346789999999999999999997643 23432212223466777777777899987 5553
Done!