Query 043447
Match_columns 65
No_of_seqs 101 out of 200
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.6 5.5E-16 1.2E-20 115.7 5.0 58 8-65 12-77 (331)
2 PF13450 NAD_binding_8: NAD(P) 98.5 1.5E-07 3.2E-12 55.1 2.9 51 9-59 8-68 (68)
3 PF01593 Amino_oxidase: Flavin 98.3 8.2E-07 1.8E-11 60.4 3.4 52 9-60 3-64 (450)
4 PRK11883 protoporphyrinogen ox 97.8 1.2E-05 2.5E-10 57.9 2.6 52 8-59 11-72 (451)
5 PLN02268 probable polyamine ox 97.8 2.6E-05 5.7E-10 56.8 4.2 52 8-59 11-72 (435)
6 TIGR00562 proto_IX_ox protopor 97.8 2.2E-05 4.9E-10 57.1 3.3 52 8-59 13-76 (462)
7 PLN02576 protoporphyrinogen ox 97.7 3.2E-05 7E-10 57.2 3.1 51 8-58 23-82 (496)
8 PRK07208 hypothetical protein; 97.7 5.9E-05 1.3E-09 55.6 4.3 54 7-60 14-75 (479)
9 TIGR03467 HpnE squalene-associ 97.6 0.0001 2.2E-09 52.0 4.8 49 11-59 1-59 (419)
10 TIGR02731 phytoene_desat phyto 97.5 0.00012 2.6E-09 53.7 3.8 52 8-59 10-70 (453)
11 PRK12416 protoporphyrinogen ox 97.4 0.0001 2.3E-09 54.2 2.4 51 9-59 13-77 (463)
12 PRK07233 hypothetical protein; 97.4 0.00019 4.1E-09 51.2 3.2 52 8-59 10-69 (434)
13 KOG0029 Amine oxidase [Seconda 97.3 0.00032 7E-09 54.5 4.3 51 8-58 26-86 (501)
14 TIGR02732 zeta_caro_desat caro 97.2 0.00032 6.8E-09 53.1 3.6 52 8-59 10-70 (474)
15 TIGR02734 crtI_fam phytoene de 97.2 0.00043 9.4E-09 51.5 3.7 50 8-58 9-66 (502)
16 TIGR02733 desat_CrtD C-3',4' d 96.9 0.0012 2.6E-08 49.2 4.1 51 9-59 13-73 (492)
17 PLN02612 phytoene desaturase 96.9 0.0018 3.8E-08 50.3 4.5 52 8-59 104-164 (567)
18 PLN02568 polyamine oxidase 96.8 0.0015 3.2E-08 50.8 3.6 53 7-59 15-81 (539)
19 COG1233 Phytoene dehydrogenase 96.7 0.002 4.4E-08 49.0 3.7 43 8-50 14-64 (487)
20 PLN02676 polyamine oxidase 96.4 0.0037 8.1E-08 47.7 3.5 52 7-58 36-100 (487)
21 PLN02487 zeta-carotene desatur 96.0 0.008 1.7E-07 47.4 3.6 52 8-59 86-146 (569)
22 PLN02529 lysine-specific histo 95.8 0.0089 1.9E-07 48.8 3.3 51 8-58 171-234 (738)
23 COG1231 Monoamine oxidase [Ami 95.8 0.01 2.2E-07 46.7 3.2 51 8-58 18-76 (450)
24 PLN02328 lysine-specific histo 95.7 0.014 3E-07 48.3 3.9 51 8-58 249-312 (808)
25 COG1232 HemY Protoporphyrinoge 95.4 0.018 3.8E-07 44.7 3.3 52 8-59 11-72 (444)
26 TIGR02730 carot_isom carotene 94.9 0.016 3.4E-07 43.5 1.8 39 9-47 12-58 (493)
27 PLN03000 amine oxidase 94.4 0.049 1.1E-06 45.7 3.7 53 6-58 193-258 (881)
28 COG3349 Uncharacterized conser 94.1 0.05 1.1E-06 43.1 3.0 44 8-51 11-63 (485)
29 KOG0685 Flavin-containing amin 92.7 0.17 3.7E-06 40.4 3.9 51 7-57 31-91 (498)
30 TIGR00031 UDP-GALP_mutase UDP- 92.0 0.27 5.9E-06 37.1 4.1 54 7-60 11-73 (377)
31 PLN02976 amine oxidase 89.9 0.21 4.5E-06 44.8 2.1 42 6-47 702-752 (1713)
32 PRK12775 putative trifunctiona 87.9 0.66 1.4E-05 39.0 3.6 54 8-64 441-495 (1006)
33 PRK12779 putative bifunctional 87.7 0.6 1.3E-05 39.1 3.2 19 8-26 317-335 (944)
34 PRK13977 myosin-cross-reactive 81.9 1.7 3.6E-05 35.2 3.2 49 9-58 34-96 (576)
35 PRK12809 putative oxidoreducta 80.0 2.4 5.1E-05 33.5 3.5 20 7-26 320-339 (639)
36 PF01494 FAD_binding_3: FAD bi 79.3 1.3 2.9E-05 30.0 1.7 18 9-26 13-30 (356)
37 PRK12769 putative oxidoreducta 79.3 3.6 7.8E-05 32.5 4.3 19 8-26 338-356 (654)
38 TIGR01316 gltA glutamate synth 79.3 3.7 8.1E-05 30.9 4.2 20 8-27 144-163 (449)
39 PRK12778 putative bifunctional 78.7 3 6.6E-05 33.5 3.8 19 8-26 442-460 (752)
40 PRK12831 putative oxidoreducta 77.5 4 8.6E-05 31.0 3.9 20 8-27 151-170 (464)
41 PF03853 YjeF_N: YjeF-related 76.5 1.8 3.9E-05 28.8 1.7 20 8-27 40-59 (169)
42 TIGR01988 Ubi-OHases Ubiquinon 76.0 1.8 3.9E-05 30.4 1.6 19 9-27 11-29 (385)
43 PRK06753 hypothetical protein; 75.4 1.9 4.1E-05 30.5 1.6 19 8-26 11-29 (373)
44 PF03033 Glyco_transf_28: Glyc 75.2 2.7 6E-05 25.5 2.1 38 10-50 16-54 (139)
45 COG0062 Uncharacterized conser 74.8 2.1 4.7E-05 30.3 1.8 21 7-27 63-83 (203)
46 TIGR01318 gltD_gamma_fam gluta 74.4 4.9 0.00011 30.5 3.7 19 8-26 152-170 (467)
47 COG0493 GltD NADPH-dependent g 73.4 2.5 5.4E-05 32.9 2.0 24 8-31 134-163 (457)
48 PRK07236 hypothetical protein; 73.1 2.3 4.9E-05 30.7 1.6 20 8-27 17-36 (386)
49 PRK08163 salicylate hydroxylas 72.9 2.3 5.1E-05 30.3 1.6 18 9-26 16-33 (396)
50 TIGR01292 TRX_reduct thioredox 72.8 2.5 5.3E-05 28.5 1.6 20 8-27 11-30 (300)
51 PRK08849 2-octaprenyl-3-methyl 72.8 2.4 5.2E-05 30.6 1.6 19 9-27 15-33 (384)
52 PF13579 Glyco_trans_4_4: Glyc 72.4 3.6 7.9E-05 24.3 2.1 16 12-27 10-25 (160)
53 PRK07364 2-octaprenyl-6-methox 72.3 2.5 5.4E-05 30.4 1.6 18 9-26 30-47 (415)
54 PRK12814 putative NADPH-depend 71.9 5.6 0.00012 31.7 3.6 19 8-26 204-222 (652)
55 TIGR03219 salicylate_mono sali 69.2 3 6.6E-05 30.3 1.5 19 8-26 11-30 (414)
56 PLN03050 pyridoxine (pyridoxam 69.2 3.3 7.2E-05 29.6 1.7 25 6-30 73-98 (246)
57 PRK05714 2-octaprenyl-3-methyl 69.0 3.1 6.7E-05 30.0 1.5 19 9-27 14-32 (405)
58 PRK07538 hypothetical protein; 68.9 3.2 6.9E-05 30.3 1.6 18 9-26 12-29 (413)
59 PRK07588 hypothetical protein; 68.8 3.2 7E-05 29.8 1.6 18 9-26 12-29 (391)
60 PRK09853 putative selenate red 68.7 7 0.00015 33.7 3.7 19 8-26 550-568 (1019)
61 TIGR01984 UbiH 2-polyprenyl-6- 68.6 3.2 7E-05 29.4 1.5 18 9-26 11-29 (382)
62 PRK06847 hypothetical protein; 67.8 3.5 7.6E-05 29.1 1.6 19 8-26 15-33 (375)
63 COG1635 THI4 Ribulose 1,5-bisp 67.6 13 0.00028 27.8 4.5 51 6-56 39-115 (262)
64 PRK09126 hypothetical protein; 67.5 3.6 7.7E-05 29.3 1.6 20 8-27 14-33 (392)
65 TIGR03315 Se_ygfK putative sel 67.2 9.5 0.00021 32.8 4.2 19 8-26 548-566 (1012)
66 COG0644 FixC Dehydrogenases (f 67.2 4.1 8.9E-05 29.9 1.9 19 8-26 14-32 (396)
67 PRK13984 putative oxidoreducta 66.7 9.2 0.0002 29.7 3.8 19 8-26 294-312 (604)
68 PRK06617 2-octaprenyl-6-methox 66.0 3.9 8.4E-05 29.5 1.5 18 9-26 13-30 (374)
69 PRK06475 salicylate hydroxylas 66.0 4 8.6E-05 29.6 1.6 19 8-26 13-31 (400)
70 PF10123 Mu-like_Pro: Mu-like 65.6 8.8 0.00019 28.1 3.3 39 23-63 1-40 (326)
71 TIGR02360 pbenz_hydroxyl 4-hyd 65.5 4.1 8.8E-05 29.8 1.6 18 9-26 14-31 (390)
72 PF01266 DAO: FAD dependent ox 65.2 4.6 9.9E-05 27.4 1.7 20 8-27 10-29 (358)
73 PRK07045 putative monooxygenas 64.1 4.6 0.0001 29.0 1.6 18 9-26 17-34 (388)
74 TIGR01317 GOGAT_sm_gam glutama 63.4 14 0.00031 28.2 4.2 19 8-26 154-172 (485)
75 PF13439 Glyco_transf_4: Glyco 63.2 7.2 0.00016 23.4 2.1 21 11-31 20-41 (177)
76 PRK12810 gltD glutamate syntha 62.7 16 0.00034 27.6 4.3 19 8-26 154-172 (471)
77 COG2084 MmsB 3-hydroxyisobutyr 62.3 6.3 0.00014 29.2 2.1 21 6-26 9-29 (286)
78 PRK05868 hypothetical protein; 62.3 5.1 0.00011 29.1 1.6 19 8-26 12-30 (372)
79 TIGR02032 GG-red-SF geranylger 62.2 5.9 0.00013 26.4 1.8 20 8-27 11-30 (295)
80 PRK08850 2-octaprenyl-6-methox 62.2 5.4 0.00012 28.9 1.7 19 9-27 16-34 (405)
81 COG0654 UbiH 2-polyprenyl-6-me 61.6 5.3 0.00012 29.1 1.6 18 9-26 14-31 (387)
82 PRK08243 4-hydroxybenzoate 3-m 60.2 5.8 0.00013 28.7 1.6 19 8-26 13-31 (392)
83 COG0504 PyrG CTP synthase (UTP 60.1 9.4 0.0002 31.1 2.8 33 10-47 21-62 (533)
84 KOG1399 Flavin-containing mono 59.7 5.7 0.00012 30.9 1.5 19 8-26 17-35 (448)
85 PRK07494 2-octaprenyl-6-methox 58.7 6.4 0.00014 28.1 1.5 19 8-26 18-36 (388)
86 PRK06567 putative bifunctional 58.4 6.4 0.00014 34.1 1.7 19 9-27 395-413 (1028)
87 PRK12409 D-amino acid dehydrog 57.9 7.1 0.00015 28.2 1.7 20 8-27 12-31 (410)
88 PRK08020 ubiF 2-octaprenyl-3-m 57.9 6.8 0.00015 28.0 1.6 19 8-26 16-34 (391)
89 PLN02172 flavin-containing mon 57.7 7 0.00015 30.0 1.7 20 7-26 20-39 (461)
90 PRK06185 hypothetical protein; 57.3 7.1 0.00015 28.0 1.6 19 8-26 17-35 (407)
91 PLN02927 antheraxanthin epoxid 56.5 7.3 0.00016 31.9 1.7 18 9-26 93-110 (668)
92 PRK08013 oxidoreductase; Provi 55.8 7.9 0.00017 28.1 1.7 18 9-26 15-32 (400)
93 PRK07608 ubiquinone biosynthes 55.0 8.7 0.00019 27.3 1.7 19 9-27 17-35 (388)
94 PRK05732 2-octaprenyl-6-methox 54.7 8.4 0.00018 27.3 1.6 18 9-26 15-35 (395)
95 PRK10157 putative oxidoreducta 52.9 9.6 0.00021 28.4 1.7 18 9-26 17-34 (428)
96 PRK08773 2-octaprenyl-3-methyl 52.8 9.3 0.0002 27.4 1.6 18 9-26 18-35 (392)
97 PRK06116 glutathione reductase 52.6 9.9 0.00022 28.2 1.8 20 8-27 15-34 (450)
98 TIGR02023 BchP-ChlP geranylger 52.4 9.6 0.00021 27.6 1.6 18 9-26 12-29 (388)
99 PRK06184 hypothetical protein; 52.4 9.4 0.0002 28.8 1.6 18 9-26 15-32 (502)
100 PF05678 VQ: VQ motif; InterP 52.3 16 0.00035 18.9 2.0 21 42-62 5-25 (31)
101 PHA03392 egt ecdysteroid UDP-g 52.2 11 0.00025 29.2 2.1 17 11-27 40-56 (507)
102 PRK07251 pyridine nucleotide-d 51.7 11 0.00023 27.9 1.8 20 8-27 14-33 (438)
103 PRK06126 hypothetical protein; 51.5 9.8 0.00021 28.9 1.6 18 9-26 19-36 (545)
104 PRK11749 dihydropyrimidine deh 51.4 11 0.00023 28.3 1.7 19 8-26 151-169 (457)
105 PRK02705 murD UDP-N-acetylmura 51.0 11 0.00024 27.9 1.8 21 7-27 10-30 (459)
106 TIGR03140 AhpF alkyl hydropero 50.7 10 0.00022 29.0 1.6 19 8-26 223-241 (515)
107 TIGR03364 HpnW_proposed FAD de 49.9 12 0.00026 26.5 1.7 20 8-27 11-30 (365)
108 PRK10262 thioredoxin reductase 49.7 11 0.00024 26.4 1.6 19 9-27 18-36 (321)
109 PLN03049 pyridoxine (pyridoxam 49.6 11 0.00023 29.5 1.6 22 8-29 74-96 (462)
110 COG1759 5-formaminoimidazole-4 49.3 20 0.00044 27.9 3.0 25 41-65 163-188 (361)
111 COG0665 DadA Glycine/D-amino a 48.7 13 0.00028 26.2 1.8 20 8-27 15-34 (387)
112 PLN02852 ferredoxin-NADP+ redu 48.4 12 0.00026 29.4 1.7 19 8-26 37-57 (491)
113 PRK00711 D-amino acid dehydrog 48.3 13 0.00028 26.7 1.8 19 8-26 11-29 (416)
114 PRK11259 solA N-methyltryptoph 48.0 13 0.00029 26.1 1.7 20 8-27 14-33 (376)
115 PF13738 Pyr_redox_3: Pyridine 47.9 12 0.00026 23.9 1.4 20 7-26 7-27 (203)
116 PF01210 NAD_Gly3P_dh_N: NAD-d 47.4 8.6 0.00019 24.9 0.7 21 6-26 8-28 (157)
117 TIGR02028 ChlP geranylgeranyl 47.2 13 0.00028 27.5 1.6 19 8-26 11-29 (398)
118 TIGR01426 MGT glycosyltransfer 47.2 16 0.00035 26.2 2.1 17 10-26 13-29 (392)
119 TIGR01789 lycopene_cycl lycope 47.1 30 0.00065 25.5 3.5 54 9-62 11-101 (370)
120 PRK12771 putative glutamate sy 47.0 13 0.00029 28.7 1.7 19 8-26 148-166 (564)
121 PRK08244 hypothetical protein; 46.9 13 0.00028 27.9 1.6 19 8-26 13-31 (493)
122 TIGR01377 soxA_mon sarcosine o 46.8 14 0.00031 26.0 1.7 20 8-27 11-30 (380)
123 COG1148 HdrA Heterodisulfide r 46.6 13 0.00029 30.7 1.7 24 8-31 135-164 (622)
124 cd03113 CTGs CTP synthetase (C 46.4 23 0.0005 26.3 2.8 35 10-49 20-63 (255)
125 PF10727 Rossmann-like: Rossma 46.3 73 0.0016 20.6 4.9 57 6-62 19-91 (127)
126 PRK10015 oxidoreductase; Provi 46.2 14 0.0003 27.7 1.7 19 8-26 16-34 (429)
127 PLN02918 pyridoxine (pyridoxam 45.6 13 0.00029 29.9 1.6 23 8-30 150-173 (544)
128 PRK07333 2-octaprenyl-6-methox 45.6 14 0.0003 26.4 1.5 18 9-26 13-32 (403)
129 KOG0399 Glutamate synthase [Am 45.6 39 0.00085 31.2 4.4 55 6-64 1794-1850(2142)
130 PLN00093 geranylgeranyl diphos 44.6 15 0.00032 28.0 1.6 18 9-26 51-68 (450)
131 PF00201 UDPGT: UDP-glucoronos 44.5 12 0.00025 27.9 1.0 16 11-26 18-33 (500)
132 PRK10565 putative carbohydrate 44.4 15 0.00032 28.9 1.6 22 8-29 75-97 (508)
133 PF03446 NAD_binding_2: NAD bi 44.3 17 0.00036 23.6 1.7 20 7-26 11-30 (163)
134 cd03784 GT1_Gtf_like This fami 44.3 19 0.00042 25.6 2.1 18 10-27 18-35 (401)
135 PTZ00445 p36-lilke protein; Pr 44.3 61 0.0013 23.6 4.7 52 13-64 35-92 (219)
136 TIGR03143 AhpF_homolog putativ 44.1 15 0.00032 28.6 1.6 20 8-27 15-34 (555)
137 PLN02985 squalene monooxygenas 43.5 16 0.00035 28.3 1.7 19 8-26 54-72 (514)
138 cd02069 methionine_synthase_B1 43.3 17 0.00037 25.3 1.7 47 13-59 160-212 (213)
139 PF00743 FMO-like: Flavin-bind 42.7 16 0.00034 28.8 1.6 19 8-26 12-30 (531)
140 TIGR01424 gluta_reduc_2 glutat 42.1 17 0.00037 27.1 1.6 20 7-26 12-31 (446)
141 PTZ00367 squalene epoxidase; P 41.4 18 0.00039 28.7 1.7 18 9-26 45-62 (567)
142 PF07992 Pyr_redox_2: Pyridine 41.3 20 0.00044 22.7 1.7 18 9-26 11-28 (201)
143 PRK08010 pyridine nucleotide-d 41.3 19 0.00041 26.6 1.7 21 7-27 13-33 (441)
144 PRK12656 fructose-6-phosphate 40.8 18 0.00039 25.8 1.5 20 7-26 92-114 (222)
145 PRK08132 FAD-dependent oxidore 40.7 18 0.00039 27.6 1.6 18 9-26 35-52 (547)
146 PF02635 DrsE: DsrE/DsrF-like 40.4 75 0.0016 18.4 4.4 48 9-63 20-74 (122)
147 PRK15317 alkyl hydroperoxide r 40.2 19 0.00041 27.6 1.6 24 8-31 222-249 (517)
148 PRK06370 mercuric reductase; V 40.1 20 0.00044 26.7 1.8 20 8-27 16-35 (463)
149 PRK05249 soluble pyridine nucl 39.8 21 0.00045 26.4 1.7 21 7-27 15-35 (461)
150 PRK12770 putative glutamate sy 39.7 20 0.00043 25.7 1.6 19 8-26 29-47 (352)
151 PRK04176 ribulose-1,5-biphosph 39.3 22 0.00047 25.1 1.7 19 8-26 36-54 (257)
152 PF06418 CTP_synth_N: CTP synt 38.5 15 0.00033 27.6 0.8 35 10-49 21-64 (276)
153 cd03805 GT1_ALG2_like This fam 38.4 27 0.00059 24.3 2.1 17 11-27 21-37 (392)
154 PRK01438 murD UDP-N-acetylmura 38.2 23 0.00049 26.6 1.8 20 8-27 27-46 (480)
155 TIGR00137 gid_trmFO tRNA:m(5)U 38.1 21 0.00045 27.9 1.6 19 8-26 11-29 (433)
156 COG0446 HcaD Uncharacterized N 38.0 23 0.00051 24.6 1.7 19 8-26 147-165 (415)
157 PRK11199 tyrA bifunctional cho 38.0 25 0.00055 26.2 2.0 21 6-26 108-128 (374)
158 PRK06183 mhpA 3-(3-hydroxyphen 37.6 22 0.00047 27.2 1.6 19 8-26 21-39 (538)
159 PRK05380 pyrG CTP synthetase; 37.4 34 0.00073 27.7 2.7 35 10-49 22-65 (533)
160 PF02996 Prefoldin: Prefoldin 37.0 20 0.00043 21.9 1.1 25 26-50 50-75 (120)
161 KOG1276 Protoporphyrinogen oxi 36.0 60 0.0013 26.3 3.9 56 8-63 22-88 (491)
162 PF01522 Polysacc_deac_1: Poly 35.9 33 0.00071 20.2 1.9 19 12-30 23-42 (123)
163 PRK14619 NAD(P)H-dependent gly 35.8 20 0.00043 25.6 1.1 54 6-59 13-67 (308)
164 COG0240 GpsA Glycerol-3-phosph 35.8 25 0.00053 26.8 1.6 21 6-26 10-30 (329)
165 TIGR00875 fsa_talC_mipB fructo 35.4 24 0.00052 24.9 1.4 19 6-24 87-105 (213)
166 TIGR00292 thiazole biosynthesi 35.3 26 0.00056 24.8 1.6 20 7-26 31-50 (254)
167 PF09106 SelB-wing_2: Elongati 35.2 27 0.00058 19.4 1.4 18 48-65 33-50 (59)
168 PRK11064 wecC UDP-N-acetyl-D-m 35.1 31 0.00067 26.1 2.1 20 7-26 13-32 (415)
169 PF13477 Glyco_trans_4_2: Glyc 34.9 38 0.00083 20.2 2.1 16 12-27 16-31 (139)
170 TIGR01350 lipoamide_DH dihydro 34.7 28 0.0006 25.7 1.7 21 7-27 11-31 (461)
171 TIGR03449 mycothiol_MshA UDP-N 34.7 33 0.00072 24.2 2.1 17 11-27 28-44 (405)
172 PRK06834 hypothetical protein; 34.6 26 0.00056 26.8 1.6 18 9-26 15-32 (488)
173 TIGR01421 gluta_reduc_1 glutat 34.5 26 0.00057 26.3 1.6 19 8-26 13-31 (450)
174 PRK06129 3-hydroxyacyl-CoA deh 34.4 28 0.00061 24.8 1.7 20 7-26 12-31 (308)
175 TIGR00337 PyrG CTP synthase. C 34.0 39 0.00084 27.3 2.6 35 10-49 21-64 (525)
176 COG2820 Udp Uridine phosphoryl 33.9 69 0.0015 23.8 3.7 48 15-65 141-188 (248)
177 TIGR01692 HIBADH 3-hydroxyisob 33.6 30 0.00066 24.3 1.7 21 6-26 5-25 (288)
178 PRK06416 dihydrolipoamide dehy 33.6 28 0.00061 25.8 1.6 20 8-27 15-34 (462)
179 PRK10307 putative glycosyl tra 33.5 36 0.00077 24.4 2.1 17 11-27 23-39 (412)
180 PF01262 AlaDh_PNT_C: Alanine 33.4 30 0.00065 22.6 1.6 18 9-26 32-49 (168)
181 PF01946 Thi4: Thi4 family; PD 33.3 24 0.00052 25.8 1.2 20 7-26 27-46 (230)
182 PRK07818 dihydrolipoamide dehy 33.2 30 0.00064 25.9 1.7 20 8-27 15-34 (466)
183 COG0771 MurD UDP-N-acetylmuram 33.2 39 0.00084 26.6 2.4 21 6-26 16-36 (448)
184 PLN02661 Putative thiazole syn 33.2 66 0.0014 24.7 3.6 19 9-27 104-123 (357)
185 PRK02006 murD UDP-N-acetylmura 33.0 34 0.00073 26.0 2.0 20 8-27 18-37 (498)
186 TIGR03026 NDP-sugDHase nucleot 32.7 38 0.00082 25.2 2.2 21 6-26 9-29 (411)
187 PF03720 UDPG_MGDP_dh_C: UDP-g 32.6 29 0.00063 21.1 1.4 22 5-26 15-36 (106)
188 PRK05976 dihydrolipoamide dehy 32.6 31 0.00068 25.8 1.7 20 8-27 15-34 (472)
189 TIGR00745 apbA_panE 2-dehydrop 32.5 37 0.0008 23.1 2.0 19 9-27 3-21 (293)
190 PRK01362 putative translaldola 32.4 29 0.00063 24.5 1.5 19 6-24 87-105 (214)
191 PHA02591 hypothetical protein; 32.2 64 0.0014 20.4 2.8 24 41-64 37-60 (83)
192 PRK01747 mnmC bifunctional tRN 32.1 31 0.00067 27.3 1.7 20 8-27 271-290 (662)
193 TIGR01989 COQ6 Ubiquinone bios 31.9 30 0.00065 25.7 1.5 19 9-27 12-34 (437)
194 PRK11728 hydroxyglutarate oxid 31.5 33 0.00071 24.8 1.6 20 8-27 13-34 (393)
195 PRK01203 prefoldin subunit alp 31.3 38 0.00082 22.7 1.8 25 27-51 61-86 (130)
196 PRK12653 fructose-6-phosphate 31.3 30 0.00065 24.5 1.4 21 6-26 89-112 (220)
197 PRK09260 3-hydroxybutyryl-CoA 31.1 25 0.00054 24.7 0.9 21 6-26 10-30 (288)
198 TIGR01790 carotene-cycl lycope 31.1 34 0.00074 24.4 1.7 18 9-26 11-28 (388)
199 KOG3048 Molecular chaperone Pr 31.1 36 0.00077 23.7 1.7 43 17-59 59-113 (153)
200 PRK05335 tRNA (uracil-5-)-meth 31.0 32 0.00069 27.1 1.6 19 8-26 13-31 (436)
201 PRK03803 murD UDP-N-acetylmura 30.6 38 0.00083 25.2 1.9 21 7-27 16-36 (448)
202 TIGR02053 MerA mercuric reduct 30.4 36 0.00077 25.3 1.7 20 8-27 11-30 (463)
203 TIGR00275 flavoprotein, HI0933 30.3 33 0.00072 25.4 1.6 19 8-26 8-26 (400)
204 cd04962 GT1_like_5 This family 30.2 41 0.00089 23.0 1.9 17 11-27 20-36 (371)
205 PF04468 PSP1: PSP1 C-terminal 30.1 55 0.0012 19.8 2.3 19 43-61 58-77 (88)
206 PLN02463 lycopene beta cyclase 30.1 35 0.00077 26.2 1.7 19 8-26 39-57 (447)
207 PRK12655 fructose-6-phosphate 29.5 34 0.00073 24.3 1.4 21 6-26 89-112 (220)
208 TIGR03329 Phn_aa_oxid putative 29.4 37 0.00079 25.4 1.6 23 8-30 35-60 (460)
209 COG2907 Predicted NAD/FAD-bind 29.3 42 0.00091 26.9 2.0 20 7-27 18-37 (447)
210 PRK06115 dihydrolipoamide dehy 29.3 38 0.00082 25.5 1.7 20 7-26 13-32 (466)
211 PRK02472 murD UDP-N-acetylmura 29.2 39 0.00085 24.9 1.8 19 8-26 16-34 (447)
212 PF00070 Pyr_redox: Pyridine n 29.2 45 0.00097 18.8 1.7 19 9-27 11-29 (80)
213 PRK00421 murC UDP-N-acetylmura 29.1 45 0.00099 25.0 2.1 21 7-27 17-38 (461)
214 PF03721 UDPG_MGDP_dh_N: UDP-g 29.0 47 0.001 22.4 2.0 21 6-26 9-29 (185)
215 cd03818 GT1_ExpC_like This fam 28.6 50 0.0011 23.6 2.1 16 12-27 16-31 (396)
216 TIGR01372 soxA sarcosine oxida 28.6 36 0.00078 28.6 1.6 20 8-27 174-193 (985)
217 cd01635 Glycosyltransferase_GT 28.5 54 0.0012 20.1 2.1 17 10-26 20-36 (229)
218 cd06167 LabA_like LabA_like pr 28.4 55 0.0012 20.3 2.1 18 10-27 113-130 (149)
219 smart00420 HTH_DEOR helix_turn 28.4 29 0.00063 17.4 0.7 24 42-65 21-44 (53)
220 PRK14694 putative mercuric red 28.3 39 0.00084 25.4 1.6 20 8-27 17-36 (468)
221 PRK06467 dihydrolipoamide dehy 28.3 39 0.00084 25.6 1.6 20 8-27 15-34 (471)
222 PRK14011 prefoldin subunit alp 28.1 46 0.001 22.3 1.8 25 26-50 61-86 (144)
223 PLN02327 CTP synthase 28.0 56 0.0012 26.7 2.6 37 10-51 21-66 (557)
224 TIGR01724 hmd_rel H2-forming N 27.9 45 0.00098 25.8 1.9 18 9-26 32-49 (341)
225 TIGR00246 tRNA_RlmH_YbeA rRNA 27.9 43 0.00093 22.5 1.6 17 47-63 78-94 (153)
226 cd00584 Prefoldin_alpha Prefol 27.8 40 0.00086 21.1 1.4 22 28-49 63-84 (129)
227 PRK04308 murD UDP-N-acetylmura 27.8 43 0.00094 24.9 1.8 21 7-27 15-35 (445)
228 PRK08255 salicylyl-CoA 5-hydro 27.6 39 0.00084 27.5 1.6 18 9-26 12-31 (765)
229 PRK01710 murD UDP-N-acetylmura 27.5 43 0.00094 25.2 1.8 20 8-27 25-44 (458)
230 PRK01390 murD UDP-N-acetylmura 27.3 49 0.0011 24.7 2.0 20 8-27 20-39 (460)
231 PF02590 SPOUT_MTase: Predicte 27.3 47 0.001 22.3 1.7 18 47-64 80-97 (155)
232 PF08672 APC2: Anaphase promot 27.3 37 0.0008 19.6 1.1 26 40-65 26-51 (60)
233 PF15320 RAM: mRNA cap methyla 27.3 41 0.00088 20.8 1.3 13 45-57 11-23 (81)
234 cd03825 GT1_wcfI_like This fam 26.9 50 0.0011 22.2 1.8 17 11-27 21-37 (365)
235 PF08799 PRP4: pre-mRNA proces 26.7 28 0.0006 18.0 0.4 13 14-26 3-15 (30)
236 cd03796 GT1_PIG-A_like This fa 26.6 54 0.0012 23.5 2.0 16 12-27 23-38 (398)
237 PF04304 DUF454: Protein of un 26.5 69 0.0015 18.1 2.1 17 48-64 7-23 (71)
238 PRK14106 murD UDP-N-acetylmura 26.4 47 0.001 24.5 1.8 19 8-26 16-34 (450)
239 cd03800 GT1_Sucrose_synthase T 26.3 53 0.0011 22.5 1.9 17 11-27 29-45 (398)
240 PTZ00142 6-phosphogluconate de 26.1 37 0.00081 26.5 1.2 20 7-26 11-30 (470)
241 PF13463 HTH_27: Winged helix 26.1 25 0.00055 19.0 0.2 23 43-65 26-48 (68)
242 cd04908 ACT_Bt0572_1 N-termina 25.8 56 0.0012 17.9 1.7 15 11-25 52-66 (66)
243 PRK07846 mycothione reductase; 25.7 1.3E+02 0.0027 22.7 3.9 43 9-63 178-220 (451)
244 PF13545 HTH_Crp_2: Crp-like h 25.4 26 0.00056 19.5 0.2 23 43-65 36-58 (76)
245 PRK09754 phenylpropionate diox 25.2 46 0.00099 24.3 1.5 18 9-26 15-34 (396)
246 cd03814 GT1_like_2 This family 25.2 66 0.0014 21.3 2.1 17 11-27 22-38 (364)
247 KOG1192 UDP-glucuronosyl and U 25.2 56 0.0012 24.0 2.0 18 10-27 23-40 (496)
248 PRK07530 3-hydroxybutyryl-CoA 25.0 40 0.00087 23.6 1.1 21 6-26 13-33 (292)
249 PF02558 ApbA: Ketopantoate re 24.7 56 0.0012 20.2 1.7 19 9-27 10-28 (151)
250 cd03799 GT1_amsK_like This is 24.7 67 0.0015 21.5 2.1 16 11-26 19-34 (355)
251 PRK00683 murD UDP-N-acetylmura 24.6 53 0.0012 24.4 1.8 19 8-26 14-32 (418)
252 PRK14618 NAD(P)H-dependent gly 24.5 44 0.00095 23.8 1.3 21 6-26 13-33 (328)
253 PF00890 FAD_binding_2: FAD bi 24.5 49 0.0011 23.9 1.5 19 9-27 11-29 (417)
254 PF02780 Transketolase_C: Tran 24.4 83 0.0018 19.2 2.4 17 10-26 25-41 (124)
255 cd03794 GT1_wbuB_like This fam 24.2 69 0.0015 21.0 2.1 16 12-27 23-38 (394)
256 PRK06912 acoL dihydrolipoamide 24.2 52 0.0011 24.6 1.6 20 8-27 11-30 (458)
257 smart00345 HTH_GNTR helix_turn 24.0 41 0.00088 17.3 0.8 24 42-65 27-50 (60)
258 PRK04148 hypothetical protein; 23.9 83 0.0018 20.9 2.4 19 8-26 27-45 (134)
259 PRK06522 2-dehydropantoate 2-r 23.9 46 0.001 22.9 1.2 21 6-26 9-29 (304)
260 PRK00103 rRNA large subunit me 23.9 62 0.0013 21.8 1.8 17 47-63 80-96 (157)
261 cd00852 NifB NifB belongs to a 23.8 64 0.0014 19.4 1.8 18 6-23 72-89 (106)
262 PRK08274 tricarballylate dehyd 23.8 55 0.0012 24.3 1.7 19 9-27 16-34 (466)
263 COG2210 Peroxiredoxin family p 23.8 67 0.0014 21.8 2.0 21 11-31 22-45 (137)
264 PRK06292 dihydrolipoamide dehy 23.7 57 0.0012 24.1 1.8 20 8-27 14-33 (460)
265 PRK08293 3-hydroxybutyryl-CoA 23.7 44 0.00095 23.5 1.1 21 6-26 12-32 (287)
266 TIGR01087 murD UDP-N-acetylmur 23.4 63 0.0014 23.8 1.9 20 8-27 10-29 (433)
267 PRK07845 flavoprotein disulfid 23.3 57 0.0012 24.6 1.7 21 7-27 11-31 (466)
268 cd03791 GT1_Glycogen_synthase_ 23.3 76 0.0016 23.2 2.3 16 11-26 24-39 (476)
269 PTZ00363 rab-GDP dissociation 23.3 1.5E+02 0.0033 22.9 4.0 46 8-53 15-88 (443)
270 PRK12921 2-dehydropantoate 2-r 23.0 53 0.0011 22.7 1.4 21 6-26 9-29 (305)
271 COG1825 RplY Ribosomal protein 22.8 50 0.0011 20.6 1.2 18 3-20 7-24 (93)
272 TIGR01082 murC UDP-N-acetylmur 22.7 67 0.0015 24.0 2.0 20 8-27 10-30 (448)
273 cd03802 GT1_AviGT4_like This f 22.7 76 0.0016 21.2 2.1 17 11-27 27-43 (335)
274 cd04955 GT1_like_6 This family 22.7 71 0.0015 21.5 1.9 16 12-27 24-39 (363)
275 PF02310 B12-binding: B12 bind 22.6 90 0.0019 18.5 2.2 16 11-26 19-34 (121)
276 PRK12557 H(2)-dependent methyl 22.6 61 0.0013 24.2 1.7 19 9-27 32-50 (342)
277 cd07377 WHTH_GntR Winged helix 22.5 46 0.001 17.4 0.8 23 43-65 33-55 (66)
278 cd03823 GT1_ExpE7_like This fa 22.4 73 0.0016 20.9 1.9 15 12-26 24-38 (359)
279 PRK06249 2-dehydropantoate 2-r 22.3 51 0.0011 23.5 1.2 21 6-26 14-34 (313)
280 cd03821 GT1_Bme6_like This fam 22.3 75 0.0016 20.8 2.0 16 12-27 23-38 (375)
281 KOG0409 Predicted dehydrogenas 22.2 76 0.0016 24.5 2.2 19 8-26 46-64 (327)
282 PF01936 NYN: NYN domain; Int 22.2 70 0.0015 19.4 1.7 18 10-27 109-126 (146)
283 TIGR01505 tartro_sem_red 2-hyd 22.0 60 0.0013 22.7 1.5 20 7-26 9-28 (291)
284 PRK07819 3-hydroxybutyryl-CoA 21.9 56 0.0012 23.3 1.4 21 6-26 14-34 (286)
285 cd03819 GT1_WavL_like This fam 21.8 82 0.0018 21.2 2.1 17 11-27 18-34 (355)
286 TIGR02095 glgA glycogen/starch 21.7 76 0.0016 23.6 2.1 16 11-26 25-40 (473)
287 smart00843 Ftsk_gamma This dom 21.7 83 0.0018 18.6 1.9 16 50-65 34-49 (63)
288 PRK08229 2-dehydropantoate 2-r 21.6 63 0.0014 22.9 1.6 21 7-27 12-32 (341)
289 PRK15461 NADH-dependent gamma- 21.6 55 0.0012 23.3 1.3 20 7-26 11-30 (296)
290 COG2081 Predicted flavoprotein 21.6 87 0.0019 24.8 2.5 18 9-26 15-32 (408)
291 TIGR01133 murG undecaprenyldip 21.6 82 0.0018 21.6 2.1 16 12-27 20-35 (348)
292 PRK14573 bifunctional D-alanyl 21.6 70 0.0015 26.1 2.0 21 7-27 14-35 (809)
293 TIGR00293 prefoldin, archaeal 21.3 62 0.0013 20.1 1.4 22 28-49 62-83 (126)
294 KOG2614 Kynurenine 3-monooxyge 21.1 70 0.0015 25.4 1.8 19 8-26 13-31 (420)
295 PF10557 Cullin_Nedd8: Cullin 21.0 57 0.0012 18.6 1.1 23 43-65 38-60 (68)
296 PRK04690 murD UDP-N-acetylmura 20.9 77 0.0017 24.2 2.0 22 6-27 17-38 (468)
297 cd03816 GT1_ALG1_like This fam 20.8 82 0.0018 23.1 2.1 37 12-49 23-61 (415)
298 PRK07417 arogenate dehydrogena 20.7 74 0.0016 22.3 1.8 20 7-26 10-29 (279)
299 PF01747 ATP-sulfurylase: ATP- 20.7 90 0.002 22.1 2.2 49 7-57 131-193 (215)
300 PRK03806 murD UDP-N-acetylmura 20.7 71 0.0015 23.6 1.7 20 8-27 17-36 (438)
301 PRK09564 coenzyme A disulfide 20.7 63 0.0014 23.7 1.5 18 9-26 12-31 (444)
302 COG1923 Hfq Uncharacterized ho 20.7 95 0.0021 19.3 2.1 15 12-26 11-25 (77)
303 PRK13748 putative mercuric red 20.5 71 0.0015 24.4 1.7 20 8-27 109-128 (561)
304 PF02471 OspE: Borrelia outer 20.5 84 0.0018 20.7 1.9 26 39-64 41-66 (108)
305 COG1533 SplB DNA repair photol 20.2 3.2E+02 0.007 20.1 5.1 23 9-31 171-193 (297)
306 PF09397 Ftsk_gamma: Ftsk gamm 20.2 89 0.0019 18.4 1.8 16 50-65 35-50 (65)
307 PF14541 TAXi_C: Xylanase inhi 20.2 1.1E+02 0.0023 19.6 2.3 28 34-61 30-57 (161)
308 cd00890 Prefoldin Prefoldin is 20.0 1.3E+02 0.0029 18.2 2.7 33 24-56 58-92 (129)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.61 E-value=5.5e-16 Score=115.73 Aligned_cols=58 Identities=34% Similarity=0.537 Sum_probs=54.2
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHHHHHCCCC
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G~v 65 (65)
-|+++|+.|+++|..|||| + |||+ .-++..||||||||+++++.|.++|+.|.++|+|
T Consensus 12 AGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV 77 (331)
T COG3380 12 AGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLV 77 (331)
T ss_pred HHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCce
Confidence 4899999999999999999 7 8999 5667779999999999999999999999999986
No 2
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.46 E-value=1.5e-07 Score=55.09 Aligned_cols=51 Identities=29% Similarity=0.398 Sum_probs=42.7
Q ss_pred CchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeee--cChhHHHHHHHH
Q 043447 9 GSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMP--NDSRFRKLVDCW 59 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTa--r~~~F~~~v~~w 59 (65)
|+++|..|++.|++|+|| + |++. ..++..+|+|+.+|.. .++.+.+++++|
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 789999999999999999 6 7888 3355789999999998 568898888764
No 3
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.27 E-value=8.2e-07 Score=60.41 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=43.4
Q ss_pred CchHHHHHhhcCceeEEe-----e-eccc--CCC--CcccccccceeeecChhHHHHHHHHH
Q 043447 9 GSPRRSALKKAVTRVELW-----L-GRMI--GSQ--PLIFDHAAQFFMPNDSRFRKLVDCWL 60 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf-----~-GRma--~~~--~~~fDHGAQYFTar~~~F~~~v~~w~ 60 (65)
|++||..|+++|++|+|| + ||+. ..+ +..||+|+.+|+...+.+..++.++.
T Consensus 3 GL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~ 64 (450)
T PF01593_consen 3 GLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELG 64 (450)
T ss_dssp HHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhh
Confidence 789999999999999999 7 8998 333 67899999999988888888888754
No 4
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.84 E-value=1.2e-05 Score=57.87 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=43.0
Q ss_pred CCchHHHHHhhcC--ceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAV--TRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g--~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
-|++||..|+++| ++|+|| + ||+. ...+..+|+|++.|...++....+++++
T Consensus 11 aGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~l 72 (451)
T PRK11883 11 TGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKEL 72 (451)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHc
Confidence 3899999999988 999999 6 8887 4456679999998877788777777765
No 5
>PLN02268 probable polyamine oxidase
Probab=97.82 E-value=2.6e-05 Score=56.77 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=40.7
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeee--cChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMP--NDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTa--r~~~F~~~v~~w 59 (65)
-|++||..|+++|++|+|+ + ||+- ...+..+|.|++++.- ..+.+.++++++
T Consensus 11 sGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~l 72 (435)
T PLN02268 11 AGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRL 72 (435)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHh
Confidence 4899999999999999999 7 8987 3345679999999963 233366777664
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.77 E-value=2.2e-05 Score=57.12 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=45.3
Q ss_pred CCchHHHHHhhc----CceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKA----VTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~----g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
-|+++|..|++. |++|+|+ + ||+. ..++..||.|++.|...++.+.++++++
T Consensus 13 aGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l 76 (462)
T TIGR00562 13 SGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL 76 (462)
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc
Confidence 489999999999 9999999 6 8888 4455689999999999999888888775
No 7
>PLN02576 protoporphyrinogen oxidase
Probab=97.70 E-value=3.2e-05 Score=57.17 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=44.5
Q ss_pred CCchHHHHHhhc-CceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHH
Q 043447 8 YGSPRRSALKKA-VTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDC 58 (65)
Q Consensus 8 ~~~~~A~~L~~~-g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~ 58 (65)
-|+++|..|+++ |++|+|+ + ||+. ..++..||+|++.|...+|.+..++++
T Consensus 23 sGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~ 82 (496)
T PLN02576 23 SGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS 82 (496)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc
Confidence 489999999999 9999999 7 8988 445678999999999999988777766
No 8
>PRK07208 hypothetical protein; Provisional
Probab=97.68 E-value=5.9e-05 Score=55.56 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=47.0
Q ss_pred CCCchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHHHH
Q 043447 7 SYGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDCWL 60 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~w~ 60 (65)
--|+++|..|+++|++|+|+ + |++. ...+..+|.|++.|...+++...+++++.
T Consensus 14 isGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~ 75 (479)
T PRK07208 14 PAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEIL 75 (479)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhc
Confidence 35899999999999999999 6 8877 34456799999999999999999999885
No 9
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.64 E-value=0.0001 Score=52.03 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=40.9
Q ss_pred hHHHHHhhcCceeEEe-----e-eccc--CCC--CcccccccceeeecChhHHHHHHHH
Q 043447 11 PRRSALKKAVTRVELW-----L-GRMI--GSQ--PLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf-----~-GRma--~~~--~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
+||..|.++|++|+|+ + ||+. ..+ +..||.|+++|...++.+.++++++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~l 59 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRI 59 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHh
Confidence 5899999999999999 6 8877 222 2349999999998899998888875
No 10
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.51 E-value=0.00012 Score=53.74 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=44.5
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc---CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI---GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma---~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
-|+++|..|+++|++|+|+ + ||+. +..+..+|+|.+.|....|.+.++++++
T Consensus 10 aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l 70 (453)
T TIGR02731 10 AGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL 70 (453)
T ss_pred HHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc
Confidence 5899999999999999999 6 7876 2345679999999998899988888875
No 11
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.39 E-value=0.0001 Score=54.16 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=43.0
Q ss_pred CchHHHHHhhc------CceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHHH
Q 043447 9 GSPRRSALKKA------VTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 9 ~~~~A~~L~~~------g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
|++||..|+++ |++|+|+ + ||+. ...+..||.|++.|...++.+..+++++
T Consensus 13 GL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~l 77 (463)
T PRK12416 13 GLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDL 77 (463)
T ss_pred HHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHc
Confidence 89999999986 3789999 7 8887 3445679999999998889888888875
No 12
>PRK07233 hypothetical protein; Provisional
Probab=97.35 E-value=0.00019 Score=51.15 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
-|+++|..|+++|++|+|+ + ||.. ..++..||.|...|-..++.+..+++++
T Consensus 10 aGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~l 69 (434)
T PRK07233 10 AGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDEL 69 (434)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHc
Confidence 4899999999999999999 6 8876 4445679999998877899999888876
No 13
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.31 E-value=0.00032 Score=54.55 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=38.9
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc--CCCCc-ccccccceeeecCh-hHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI--GSQPL-IFDHAAQFFMPNDS-RFRKLVDC 58 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~-~fDHGAQYFTar~~-~F~~~v~~ 58 (65)
=|+|||+.|.+.|++|+|+ + ||+. ..... .+|.||+++|--.. -+.-+.++
T Consensus 26 aGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~q 86 (501)
T KOG0029|consen 26 AGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQ 86 (501)
T ss_pred HHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHH
Confidence 3899999999999999999 7 8998 23333 59999999995444 44444444
No 14
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.25 E-value=0.00032 Score=53.06 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc---CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI---GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma---~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
-|+++|..|++.|++|+|| + ||+. +.++..+|+|...|....+.+.++++++
T Consensus 10 aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l 70 (474)
T TIGR02732 10 AGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV 70 (474)
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc
Confidence 4899999999999999999 5 6765 2356689999999998888888888775
No 15
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.18 E-value=0.00043 Score=51.52 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=39.0
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDC 58 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~ 58 (65)
-|+++|..|.++|++|+|+ + |++. ..++..||.|+++++.. ..+..+.++
T Consensus 9 ~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~-~~~~~l~~~ 66 (502)
T TIGR02734 9 GGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMP-EALEELFAL 66 (502)
T ss_pred HHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEccc-cHHHHHHHH
Confidence 3899999999999999999 6 8888 45667899999999742 334444444
No 16
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.94 E-value=0.0012 Score=49.19 Aligned_cols=51 Identities=20% Similarity=0.123 Sum_probs=39.7
Q ss_pred CchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeee--cChhHHHHHHHH
Q 043447 9 GSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMP--NDSRFRKLVDCW 59 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTa--r~~~F~~~v~~w 59 (65)
|+++|..|.++|++|+|+ + ||+. ..++..||.|+.|++- ...-+..+++++
T Consensus 13 GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~l 73 (492)
T TIGR02733 13 GLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFREL 73 (492)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHc
Confidence 789999999999999999 6 8887 4456789999999985 333355555443
No 17
>PLN02612 phytoene desaturase
Probab=96.85 E-value=0.0018 Score=50.32 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=44.5
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc---CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI---GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma---~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
.|+++|..|.++|++|+|+ + |++. +.++..+|.|.+.|.-..|.+.++++++
T Consensus 104 ~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el 164 (567)
T PLN02612 104 AGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL 164 (567)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh
Confidence 5899999999999999999 5 7776 2356689999999998888888888776
No 18
>PLN02568 polyamine oxidase
Probab=96.78 E-value=0.0015 Score=50.83 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=41.7
Q ss_pred CCCchHHHHHhhcC-----ceeEEe-----e-eccc--CCCCcccccccceeee-cChhHHHHHHHH
Q 043447 7 SYGSPRRSALKKAV-----TRVELW-----L-GRMI--GSQPLIFDHAAQFFMP-NDSRFRKLVDCW 59 (65)
Q Consensus 7 ~~~~~~A~~L~~~g-----~~v~vf-----~-GRma--~~~~~~fDHGAQYFTa-r~~~F~~~v~~w 59 (65)
-.|+++|..|+++| ++|+|| + ||+. ...+..||.|++++.- .++.+..+++++
T Consensus 15 ~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~ 81 (539)
T PLN02568 15 MAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEA 81 (539)
T ss_pred HHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHh
Confidence 35899999999988 999999 6 8988 3345679999999994 556666666654
No 19
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.68 E-value=0.002 Score=48.99 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=35.1
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeeecCh
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDS 50 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~ 50 (65)
=|+++|-.|.++|++|+|+ + ||+. .-++..||.|+-+++.-++
T Consensus 14 ~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~ 64 (487)
T COG1233 14 NGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDP 64 (487)
T ss_pred hHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCch
Confidence 4899999999999999999 6 8888 4447899999866665433
No 20
>PLN02676 polyamine oxidase
Probab=96.40 E-value=0.0037 Score=47.71 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCCchHHHHHhhcCc-eeEEe-----e-eccc--CCCCcccccccceeee----cChhHHHHHHH
Q 043447 7 SYGSPRRSALKKAVT-RVELW-----L-GRMI--GSQPLIFDHAAQFFMP----NDSRFRKLVDC 58 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~-~v~vf-----~-GRma--~~~~~~fDHGAQYFTa----r~~~F~~~v~~ 58 (65)
--|+++|..|++.|+ .|+|+ + ||+. ...+..+|+|++++.. ..+.+..++++
T Consensus 36 ~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~ 100 (487)
T PLN02676 36 MSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANK 100 (487)
T ss_pred HHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHh
Confidence 358999999999998 59999 6 8887 3345579999999963 34445555543
No 21
>PLN02487 zeta-carotene desaturase
Probab=96.00 E-value=0.008 Score=47.44 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc---CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI---GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma---~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
.|+++|..|.++|++|+|| + |++. +..+..+|.|...|.-..+...++++++
T Consensus 86 ~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L 146 (569)
T PLN02487 86 AGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV 146 (569)
T ss_pred HHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc
Confidence 5899999999999999999 4 5665 3346679999999987778888887765
No 22
>PLN02529 lysine-specific histone demethylase 1
Probab=95.84 E-value=0.0089 Score=48.82 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=37.2
Q ss_pred CCchHHHHHhhcCceeEEe-----e-ecccCC----CC--cccccccceeeecChh-HHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMIGS----QP--LIFDHAAQFFMPNDSR-FRKLVDC 58 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma~~----~~--~~fDHGAQYFTar~~~-F~~~v~~ 58 (65)
-|+++|..|.++|++|+|+ + ||+.+. .+ ..||.||++++-.... +..+.++
T Consensus 171 aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~ 234 (738)
T PLN02529 171 AGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQ 234 (738)
T ss_pred HHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHH
Confidence 3789999999999999999 6 787721 12 3699999999964322 4445444
No 23
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.01 Score=46.67 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDC 58 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~ 58 (65)
-|++||..|+++|++|+|. + ||+- ...+-..|.|-||+....+.+....++
T Consensus 18 aGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~ 76 (450)
T COG1231 18 AGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKE 76 (450)
T ss_pred HHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHh
Confidence 4899999999999999999 6 8887 334456899999999888877776654
No 24
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.68 E-value=0.014 Score=48.31 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=38.2
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc----CCCC--cccccccceeeec-ChhHHHHHHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI----GSQP--LIFDHAAQFFMPN-DSRFRKLVDC 58 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma----~~~~--~~fDHGAQYFTar-~~~F~~~v~~ 58 (65)
-|+++|..|.+.|++|+|+ + ||+. .+.+ ..+|+|+++++-- +.-+..++++
T Consensus 249 aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~ 312 (808)
T PLN02328 249 AGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQ 312 (808)
T ss_pred HHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHH
Confidence 4899999999999999999 6 8987 2222 2599999999964 3335555554
No 25
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.36 E-value=0.018 Score=44.74 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=41.9
Q ss_pred CCchHHHHHhhcC--ceeEEe-----e-eccc--CCCCcccccccceeeecChhHHHHHHHH
Q 043447 8 YGSPRRSALKKAV--TRVELW-----L-GRMI--GSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 8 ~~~~~A~~L~~~g--~~v~vf-----~-GRma--~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
-|+++|-.|++++ .+|+|| + |-+. ..++..||.|...|-++.++...++.++
T Consensus 11 aGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL 72 (444)
T COG1232 11 AGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL 72 (444)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh
Confidence 3899999999999 999999 4 4333 6778889999999999866666666554
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.88 E-value=0.016 Score=43.54 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=34.0
Q ss_pred CchHHHHHhhcCceeEEe-----e-eccc--CCCCcccccccceeee
Q 043447 9 GSPRRSALKKAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMP 47 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTa 47 (65)
|+++|..|.++|++|+|+ + |++. ..++..||.|+.+++-
T Consensus 12 Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~ 58 (493)
T TIGR02730 12 GLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFG 58 (493)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhhee
Confidence 789999999999999999 6 8888 4567789999999763
No 27
>PLN03000 amine oxidase
Probab=94.42 E-value=0.049 Score=45.68 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=39.4
Q ss_pred CCCCchHHHHHhhcCceeEEe-----e-ecccCC------CCcccccccceeeecChhH-HHHHHH
Q 043447 6 SSYGSPRRSALKKAVTRVELW-----L-GRMIGS------QPLIFDHAAQFFMPNDSRF-RKLVDC 58 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf-----~-GRma~~------~~~~fDHGAQYFTar~~~F-~~~v~~ 58 (65)
+-.|+++|..|.+.|++|+|+ + ||+-+. .+..+|.||++++-..... ..++++
T Consensus 193 G~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~q 258 (881)
T PLN03000 193 GLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQ 258 (881)
T ss_pred cHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHH
Confidence 345789999999999999999 6 888721 1346999999999765543 333444
No 28
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.05 Score=43.06 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=36.0
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc---CCCCcccccccceeeecChh
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI---GSQPLIFDHAAQFFMPNDSR 51 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma---~~~~~~fDHGAQYFTar~~~ 51 (65)
-|+++|..|.++|++|||| + |..+ ++++....||--.|+.-=+-
T Consensus 11 AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n 63 (485)
T COG3349 11 AGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYN 63 (485)
T ss_pred HHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHH
Confidence 3899999999999999999 4 6555 67777899999998754333
No 29
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=92.65 E-value=0.17 Score=40.44 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=37.3
Q ss_pred CCCchHHHHHh-hcCceeEEe-----e-eccc--CCCCcccccccceeee-cChhHHHHHH
Q 043447 7 SYGSPRRSALK-KAVTRVELW-----L-GRMI--GSQPLIFDHAAQFFMP-NDSRFRKLVD 57 (65)
Q Consensus 7 ~~~~~~A~~L~-~~g~~v~vf-----~-GRma--~~~~~~fDHGAQYFTa-r~~~F~~~v~ 57 (65)
.-|++||++|- +.+..|+|| + ||+- .-....+|.||||..- .+..--.+++
T Consensus 31 ~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~ 91 (498)
T KOG0685|consen 31 IAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAK 91 (498)
T ss_pred hHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHH
Confidence 35899999999 677788999 6 7887 4445579999999985 4444444444
No 30
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=91.96 E-value=0.27 Score=37.12 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCCchHHHHHhhcCceeEEe-----e-eccc--CCCCcc-cccccceeeecChhHHHHHHHHH
Q 043447 7 SYGSPRRSALKKAVTRVELW-----L-GRMI--GSQPLI-FDHAAQFFMPNDSRFRKLVDCWL 60 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf-----~-GRma--~~~~~~-fDHGAQYFTar~~~F~~~v~~w~ 60 (65)
--|+++|..|.+.|.+|+|+ + |... ...+.. .+.|+..|...++....++.++.
T Consensus 11 ~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~ 73 (377)
T TIGR00031 11 LSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF 73 (377)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc
Confidence 34899999999999999999 4 4433 222223 38899999888888877777654
No 31
>PLN02976 amine oxidase
Probab=89.94 E-value=0.21 Score=44.79 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=34.7
Q ss_pred CCCCchHHHHHhhcCceeEEe-----e-ecccC---CCCcccccccceeee
Q 043447 6 SSYGSPRRSALKKAVTRVELW-----L-GRMIG---SQPLIFDHAAQFFMP 47 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf-----~-GRma~---~~~~~fDHGAQYFTa 47 (65)
+-.|+++|..|.+.|+.|+|| + ||+.. ..+..+|+|+++++-
T Consensus 702 G~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G 752 (1713)
T PLN02976 702 GPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITG 752 (1713)
T ss_pred hHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEec
Confidence 457899999999999999999 6 78762 235579999999985
No 32
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=87.86 E-value=0.66 Score=39.00 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCchHHHHHhhcCceeEEee-ecccCCCCcccccccceeeecChhHHHHHHHHHHCCC
Q 043447 8 YGSPRRSALKKAVTRVELWL-GRMIGSQPLIFDHAAQFFMPNDSRFRKLVDCWLERGL 64 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~-GRma~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G~ 64 (65)
-|+++|..|.+.|++|+||- +.-. ++.+-+|-++|....+.....++.|.+.|+
T Consensus 441 AGLsaA~~La~~G~~VtV~E~~~~~---GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv 495 (1006)
T PRK12775 441 AGLAAAADLVKYGVDVTVYEALHVV---GGVLQYGIPSFRLPRDIIDREVQRLVDIGV 495 (1006)
T ss_pred HHHHHHHHHHHcCCcEEEEecCCCC---cceeeccCCccCCCHHHHHHHHHHHHHCCC
Confidence 48999999999999999994 2211 122345666664444455666666666553
No 33
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=87.67 E-value=0.6 Score=39.10 Aligned_cols=19 Identities=16% Similarity=0.016 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.+.||+||||
T Consensus 317 AGLsaA~~Lar~G~~VtVf 335 (944)
T PRK12779 317 SGLINAYLLAVEGFPVTVF 335 (944)
T ss_pred HHHHHHHHHHHCCCeEEEE
Confidence 3799999999999999999
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=81.86 E-value=1.7 Score=35.18 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=34.8
Q ss_pred CchHHHHHhhc----CceeEEe-----e-ecccC----CCCcccccccceeeecChhHHHHHHH
Q 043447 9 GSPRRSALKKA----VTRVELW-----L-GRMIG----SQPLIFDHAAQFFMPNDSRFRKLVDC 58 (65)
Q Consensus 9 ~~~~A~~L~~~----g~~v~vf-----~-GRma~----~~~~~fDHGAQYFTar~~~F~~~v~~ 58 (65)
|++||-.|.+. |++|+|| + |++.. ..+..+|-|..+ .-..+.+..+++.
T Consensus 34 GLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~~l~~ll~~ 96 (576)
T PRK13977 34 SLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFECLWDLFRS 96 (576)
T ss_pred HHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHHHHHHHHHh
Confidence 78999999985 6899999 6 88861 334467777653 4555666666654
No 35
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=80.03 E-value=2.4 Score=33.53 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=18.3
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|+++|..|++.|++|+||
T Consensus 320 paGl~aA~~L~~~G~~Vtv~ 339 (639)
T PRK12809 320 PAGLGCADILARAGVQVDVF 339 (639)
T ss_pred HHHHHHHHHHHHcCCcEEEE
Confidence 34789999999999999999
No 36
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=79.34 E-value=1.3 Score=29.99 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=17.2
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+.+|..|++.|++|+||
T Consensus 13 Gl~~A~~L~~~G~~v~i~ 30 (356)
T PF01494_consen 13 GLAAALALARAGIDVTII 30 (356)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhcccccccc
Confidence 788999999999999999
No 37
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.32 E-value=3.6 Score=32.49 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
=|+++|..|...|++|+||
T Consensus 338 AGLsaA~~L~~~G~~V~V~ 356 (654)
T PRK12769 338 AGLACADVLARNGVAVTVY 356 (654)
T ss_pred HHHHHHHHHHHCCCeEEEE
Confidence 3789999999999999999
No 38
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=79.26 E-value=3.7 Score=30.85 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=18.4
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
.|+++|..|.+.|++|+||.
T Consensus 144 aGl~aA~~l~~~G~~V~vie 163 (449)
T TIGR01316 144 AGLACASELAKAGHSVTVFE 163 (449)
T ss_pred HHHHHHHHHHHCCCcEEEEe
Confidence 58899999999999999993
No 39
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=78.72 E-value=3 Score=33.45 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|...|++|+||
T Consensus 442 AGl~aA~~l~~~G~~V~v~ 460 (752)
T PRK12778 442 AGLSFAGDLAKRGYDVTVF 460 (752)
T ss_pred HHHHHHHHHHHCCCeEEEE
Confidence 4789999999999999999
No 40
>PRK12831 putative oxidoreductase; Provisional
Probab=77.49 E-value=4 Score=31.04 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+++|..|++.|++|+||-
T Consensus 151 AGl~aA~~l~~~G~~V~v~e 170 (464)
T PRK12831 151 AGLTCAGDLAKMGYDVTIFE 170 (464)
T ss_pred HHHHHHHHHHhCCCeEEEEe
Confidence 58899999999999999993
No 41
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=76.50 E-value=1.8 Score=28.76 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.0
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+++|+.|.+.|++|+||.
T Consensus 40 Dgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 40 DGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEE
Confidence 47899999999999999974
No 42
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=75.97 E-value=1.8 Score=30.37 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=17.7
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+++|..|.+.|++|+||.
T Consensus 11 Gl~~A~~L~~~G~~v~v~E 29 (385)
T TIGR01988 11 GLALALALARSGLKIALIE 29 (385)
T ss_pred HHHHHHHHhcCCCEEEEEe
Confidence 7899999999999999993
No 43
>PRK06753 hypothetical protein; Provisional
Probab=75.38 E-value=1.9 Score=30.55 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|++.|+.|+|+
T Consensus 11 aGl~~A~~L~~~g~~v~v~ 29 (373)
T PRK06753 11 GGLTAAALLQEQGHEVKVF 29 (373)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 3789999999999999999
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=75.18 E-value=2.7 Score=25.54 Aligned_cols=38 Identities=13% Similarity=-0.009 Sum_probs=22.8
Q ss_pred chHHHHHhhcCceeEEee-ecccCCCCcccccccceeeecCh
Q 043447 10 SPRRSALKKAVTRVELWL-GRMIGSQPLIFDHAAQFFMPNDS 50 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf~-GRma~~~~~~fDHGAQYFTar~~ 50 (65)
..-|++|++.||+|++.. ..+.+.- -.+|.+|.....+
T Consensus 16 lala~~L~~rGh~V~~~~~~~~~~~v---~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATPPDFRERV---EAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHHHTT-EEEEEETGGGHHHH---HHTT-EEEESSSC
T ss_pred HHHHHHHhccCCeEEEeecccceecc---cccCceEEEecCC
Confidence 456899999999999885 5544111 2455555555444
No 45
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=74.76 E-value=2.1 Score=30.30 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=18.8
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.=|+.+|+.|+..|+.|+||.
T Consensus 63 GDG~VaAR~L~~~G~~V~v~~ 83 (203)
T COG0062 63 GDGLVAARHLKAAGYAVTVLL 83 (203)
T ss_pred HHHHHHHHHHHhCCCceEEEE
Confidence 347899999999999999995
No 46
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=74.37 E-value=4.9 Score=30.49 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|+..|++|+||
T Consensus 152 aGl~aA~~l~~~G~~V~i~ 170 (467)
T TIGR01318 152 AGLACADILARAGVQVVVF 170 (467)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 4789999999999999999
No 47
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=73.45 E-value=2.5 Score=32.91 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.1
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI 31 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma 31 (65)
-|+.+|..|..+||.|||| + |+|-
T Consensus 134 AGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 134 AGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred hHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 4788999999999999999 4 7776
No 48
>PRK07236 hypothetical protein; Provisional
Probab=73.12 E-value=2.3 Score=30.69 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=18.2
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+++|..|.+.|++|+||.
T Consensus 17 aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 17 GGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEe
Confidence 37899999999999999993
No 49
>PRK08163 salicylate hydroxylase; Provisional
Probab=72.87 E-value=2.3 Score=30.31 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=17.4
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|+++|++|+||
T Consensus 16 Gl~~A~~L~~~g~~v~v~ 33 (396)
T PRK08163 16 GLAAALALARQGIKVKLL 33 (396)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 789999999999999999
No 50
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=72.80 E-value=2.5 Score=28.48 Aligned_cols=20 Identities=10% Similarity=-0.076 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+++|..|.+.|++|+|+.
T Consensus 11 aGl~aA~~l~~~g~~v~lie 30 (300)
T TIGR01292 11 AGLTAAIYAARANLKTLIIE 30 (300)
T ss_pred HHHHHHHHHHHCCCCEEEEe
Confidence 37899999999999999994
No 51
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=72.79 E-value=2.4 Score=30.61 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=17.8
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+++|..|.+.|++|+|+.
T Consensus 15 Gl~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 15 GAATALGFAKQGRSVAVIE 33 (384)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 7899999999999999994
No 52
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=72.38 E-value=3.6 Score=24.25 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=13.1
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
=++.|.+.||+|+|+.
T Consensus 10 l~~~L~~~G~~V~v~~ 25 (160)
T PF13579_consen 10 LARALAARGHEVTVVT 25 (160)
T ss_dssp HHHHHHHTT-EEEEEE
T ss_pred HHHHHHHCCCEEEEEe
Confidence 4789999999999994
No 53
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=72.31 E-value=2.5 Score=30.37 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.++|++|+|+
T Consensus 30 Gl~~A~~L~~~G~~v~v~ 47 (415)
T PRK07364 30 GLTLAAALKDSGLRIALI 47 (415)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 789999999999999999
No 54
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=71.87 E-value=5.6 Score=31.65 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|...|++|+||
T Consensus 204 AGl~aA~~La~~G~~Vtv~ 222 (652)
T PRK12814 204 AGLTAAYYLLRKGHDVTIF 222 (652)
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 4799999999999999999
No 55
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=69.21 E-value=3 Score=30.31 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=17.1
Q ss_pred CCchHHHHHhhcCc-eeEEe
Q 043447 8 YGSPRRSALKKAVT-RVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~-~v~vf 26 (65)
-|+++|..|+++|+ +|+||
T Consensus 11 aGla~A~~L~~~g~~~v~v~ 30 (414)
T TIGR03219 11 AGVALALNLCKHSHLNVQLF 30 (414)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 37899999999985 99999
No 56
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=69.16 E-value=3.3 Score=29.61 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=21.0
Q ss_pred CCCCchHHHHHhhcCceeEEee-ecc
Q 043447 6 SSYGSPRRSALKKAVTRVELWL-GRM 30 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf~-GRm 30 (65)
+.=|+.+|+.|.+.|.+|+||+ .++
T Consensus 73 GGDGlv~AR~L~~~G~~V~v~~~~~~ 98 (246)
T PLN03050 73 GGDGLVAARHLAHFGYEVTVCYPKQS 98 (246)
T ss_pred chhHHHHHHHHHHCCCeEEEEEcCCC
Confidence 4457899999999999999997 544
No 57
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=68.97 E-value=3.1 Score=30.02 Aligned_cols=19 Identities=32% Similarity=0.139 Sum_probs=17.8
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|++.|..|.++|++|+|+.
T Consensus 14 Gl~~A~~L~~~G~~v~viE 32 (405)
T PRK05714 14 GSALALALQGSGLEVLLLD 32 (405)
T ss_pred HHHHHHHHhcCCCEEEEEc
Confidence 7899999999999999995
No 58
>PRK07538 hypothetical protein; Provisional
Probab=68.93 E-value=3.2 Score=30.28 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|++.|++|+||
T Consensus 12 Gl~~A~~L~~~G~~v~v~ 29 (413)
T PRK07538 12 GLTLALTLHQRGIEVVVF 29 (413)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 789999999999999999
No 59
>PRK07588 hypothetical protein; Provisional
Probab=68.80 E-value=3.2 Score=29.78 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=17.4
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.+.|++|+|+
T Consensus 12 Gl~~A~~L~~~G~~v~v~ 29 (391)
T PRK07588 12 GPTLAYWLRRYGHEPTLI 29 (391)
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 789999999999999999
No 60
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=68.66 E-value=7 Score=33.67 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|+..|++|+||
T Consensus 550 AGLsAA~~Lar~G~~VtV~ 568 (1019)
T PRK09853 550 AGLAAAYFLARAGHPVTVF 568 (1019)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 4899999999999999999
No 61
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=68.61 E-value=3.2 Score=29.37 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=17.3
Q ss_pred CchHHHHHhhcC-ceeEEe
Q 043447 9 GSPRRSALKKAV-TRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g-~~v~vf 26 (65)
|+++|..|.++| ++|+|+
T Consensus 11 Gl~~A~~L~~~G~~~v~v~ 29 (382)
T TIGR01984 11 GLSLALALSRLGKIKIALI 29 (382)
T ss_pred HHHHHHHHhcCCCceEEEE
Confidence 789999999999 999999
No 62
>PRK06847 hypothetical protein; Provisional
Probab=67.78 E-value=3.5 Score=29.13 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|++.|++|+|+
T Consensus 15 aGl~~A~~L~~~g~~v~v~ 33 (375)
T PRK06847 15 GGLSAAIALRRAGIAVDLV 33 (375)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 3789999999999999999
No 63
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=67.60 E-value=13 Score=27.83 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=35.1
Q ss_pred CCCCchHHHHHhhcCceeEEe-----e-e----------ccc----------CCCCcccccccceeeecChhHHHHH
Q 043447 6 SSYGSPRRSALKKAVTRVELW-----L-G----------RMI----------GSQPLIFDHAAQFFMPNDSRFRKLV 56 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf-----~-G----------Rma----------~~~~~~fDHGAQYFTar~~~F~~~v 56 (65)
++-|++||..|.++|..|.|| + | .|. +-.-..-|++--|+.+.+++|.+-+
T Consensus 39 GPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl 115 (262)
T COG1635 39 GPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEFASKL 115 (262)
T ss_pred CcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHHHHHHH
Confidence 467999999999999999999 1 1 111 1111224566668888888887644
No 64
>PRK09126 hypothetical protein; Provisional
Probab=67.53 E-value=3.6 Score=29.35 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=18.0
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+.+|..|.+.|++|+|+.
T Consensus 14 aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 14 AGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred HHHHHHHHHHhCCCcEEEEe
Confidence 37899999999999999993
No 65
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=67.24 E-value=9.5 Score=32.80 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|++||..|...|++|+||
T Consensus 548 AGLSAA~~LAr~G~~VTV~ 566 (1012)
T TIGR03315 548 AGLSAGYFLARAGHPVTVF 566 (1012)
T ss_pred HHHHHHHHHHHCCCeEEEE
Confidence 3789999999999999999
No 66
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=67.21 E-value=4.1 Score=29.88 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
=|+++|..|++.|.+|.|+
T Consensus 14 AGs~aA~~la~~G~~Vlvl 32 (396)
T COG0644 14 AGSSAARRLAKAGLDVLVL 32 (396)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 3899999999999999999
No 67
>PRK13984 putative oxidoreductase; Provisional
Probab=66.70 E-value=9.2 Score=29.71 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|++.|++|+||
T Consensus 294 aGl~aA~~L~~~G~~v~vi 312 (604)
T PRK13984 294 AGLSAAYFLATMGYEVTVY 312 (604)
T ss_pred HHHHHHHHHHHCCCeEEEE
Confidence 4789999999999999999
No 68
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.99 E-value=3.9 Score=29.48 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|++.|..|.+.|++|+|+
T Consensus 13 Gl~~A~~L~~~G~~v~l~ 30 (374)
T PRK06617 13 GMLTALSFAQKGIKTTIF 30 (374)
T ss_pred HHHHHHHHHcCCCeEEEe
Confidence 789999999999999999
No 69
>PRK06475 salicylate hydroxylase; Provisional
Probab=65.98 E-value=4 Score=29.64 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
=|+++|..|++.|++|+|+
T Consensus 13 aGl~~A~~L~~~G~~V~i~ 31 (400)
T PRK06475 13 AGLSAALELAARGWAVTII 31 (400)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 3789999999999999999
No 70
>PF10123 Mu-like_Pro: Mu-like prophage I protein; InterPro: IPR012106 This entry is represented by the Bacteriophage Mu, Gp32. The characteristics of the protein distribution suggest prophage matches.
Probab=65.58 E-value=8.8 Score=28.13 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=30.2
Q ss_pred eEEee-ecccCCCCcccccccceeeecChhHHHHHHHHHHCC
Q 043447 23 VELWL-GRMIGSQPLIFDHAAQFFMPNDSRFRKLVDCWLERG 63 (65)
Q Consensus 23 v~vf~-GRma~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G 63 (65)
|+|++ |+....++..||.|. |++..+..+.+++.+...|
T Consensus 1 i~l~P~G~f~~~dGr~~~~~~--~~~~~~~~~~~~~~~~~~~ 40 (326)
T PF10123_consen 1 IQLLPAGTFRGRDGRPFDVGP--WRLDAADAQAVIAAFAARG 40 (326)
T ss_pred CeecCCceEECCCCCCCCCCC--eeechHHHHHHHHHHHhcC
Confidence 67888 998877777788854 5556688889999887665
No 71
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=65.54 E-value=4.1 Score=29.77 Aligned_cols=18 Identities=22% Similarity=0.039 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|++.|++|+|+
T Consensus 14 Gl~~A~~L~~~G~~v~vi 31 (390)
T TIGR02360 14 GLLLGQLLHKAGIDNVIL 31 (390)
T ss_pred HHHHHHHHHHCCCCEEEE
Confidence 789999999999999999
No 72
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=65.17 E-value=4.6 Score=27.38 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|++.|..|.+.|++|+|+.
T Consensus 10 ~G~~~A~~La~~G~~V~l~e 29 (358)
T PF01266_consen 10 AGLSTAYELARRGHSVTLLE 29 (358)
T ss_dssp HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999995
No 73
>PRK07045 putative monooxygenase; Reviewed
Probab=64.06 E-value=4.6 Score=28.96 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|++.|++|+||
T Consensus 17 Gl~~A~~L~~~G~~v~v~ 34 (388)
T PRK07045 17 GVALAHLLGARGHSVTVV 34 (388)
T ss_pred HHHHHHHHHhcCCcEEEE
Confidence 789999999999999999
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=63.40 E-value=14 Score=28.20 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=17.6
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|++.|++|+||
T Consensus 154 aGl~aA~~L~~~g~~V~v~ 172 (485)
T TIGR01317 154 AGLAAADQLNRAGHTVTVF 172 (485)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 3789999999999999999
No 75
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=63.18 E-value=7.2 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.023 Sum_probs=15.2
Q ss_pred hHHHHHhhcCceeEEee-eccc
Q 043447 11 PRRSALKKAVTRVELWL-GRMI 31 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~-GRma 31 (65)
.-++.|++.||+|+|+. +...
T Consensus 20 ~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 20 NLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHCCCEEEEEEcCCCc
Confidence 45789999999999996 4333
No 76
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=62.72 E-value=16 Score=27.64 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.+.|++|+||
T Consensus 154 AGl~aA~~l~~~G~~V~vi 172 (471)
T PRK12810 154 AGLAAADQLARAGHKVTVF 172 (471)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 4789999999999999999
No 77
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=62.32 E-value=6.3 Score=29.22 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.8
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|.+-|..|.++||+|+||
T Consensus 9 G~MG~pmA~~L~~aG~~v~v~ 29 (286)
T COG2084 9 GIMGSPMAANLLKAGHEVTVY 29 (286)
T ss_pred chhhHHHHHHHHHCCCEEEEE
Confidence 345889999999999999999
No 78
>PRK05868 hypothetical protein; Validated
Probab=62.27 E-value=5.1 Score=29.13 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.+.|++|+|+
T Consensus 12 aGl~~A~~L~~~G~~v~vi 30 (372)
T PRK05868 12 AGTAAAYWLGRHGYSVTMV 30 (372)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 3789999999999999999
No 79
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=62.22 E-value=5.9 Score=26.40 Aligned_cols=20 Identities=25% Similarity=0.121 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+.+|..|++.|.+|.|+.
T Consensus 11 aGl~~A~~l~~~g~~v~vie 30 (295)
T TIGR02032 11 AGASAAYRLADKGLRVLLLE 30 (295)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999994
No 80
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=62.20 E-value=5.4 Score=28.91 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=17.6
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+++|..|.+.|++|+|+.
T Consensus 16 Gl~~A~~L~~~G~~v~viE 34 (405)
T PRK08850 16 GLALAAALKESDLRIAVIE 34 (405)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 7899999999999999994
No 81
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=61.59 E-value=5.3 Score=29.06 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+..|..|+++|++|+|+
T Consensus 14 Gl~lA~~L~~~G~~V~l~ 31 (387)
T COG0654 14 GLALALALARAGLDVTLL 31 (387)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 789999999999999999
No 82
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=60.16 E-value=5.8 Score=28.70 Aligned_cols=19 Identities=16% Similarity=-0.090 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|++.|++|+|+
T Consensus 13 aGl~~A~~L~~~G~~v~v~ 31 (392)
T PRK08243 13 AGLLLGQLLHLAGIDSVVL 31 (392)
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 4789999999999999999
No 83
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=60.14 E-value=9.4 Score=31.07 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=24.0
Q ss_pred chHHHHHhhcCceeEEe-------e--ecccCCCCcccccccceeee
Q 043447 10 SPRRSALKKAVTRVELW-------L--GRMIGSQPLIFDHAAQFFMP 47 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf-------~--GRma~~~~~~fDHGAQYFTa 47 (65)
+|-++.|++.|+.|++. + |.|++ +.||=-|.|-
T Consensus 21 aSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP-----~qHGEVfVtd 62 (533)
T COG0504 21 ASLGRLLKARGLKVTIQKLDPYLNVDPGTMSP-----YQHGEVFVTD 62 (533)
T ss_pred HHHHHHHHHCCceEEEEecccceecCCCCCCc-----ccCceEEECC
Confidence 56778999999999999 2 88872 3455555543
No 84
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.74 E-value=5.7 Score=30.93 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|+.|+..|+.|+||
T Consensus 17 sGL~~ar~l~~~g~~v~vf 35 (448)
T KOG1399|consen 17 AGLAAARELLREGHEVVVF 35 (448)
T ss_pred HHHHHHHHHHHCCCCceEE
Confidence 4899999999999999999
No 85
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=58.71 E-value=6.4 Score=28.10 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|++.|..|.++|++|+|+
T Consensus 18 ~Gl~~A~~L~~~G~~v~li 36 (388)
T PRK07494 18 AGLAAAIALARAGASVALV 36 (388)
T ss_pred HHHHHHHHHhcCCCeEEEE
Confidence 4889999999999999999
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=58.41 E-value=6.4 Score=34.12 Aligned_cols=19 Identities=16% Similarity=-0.060 Sum_probs=18.1
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+++|..|...||+||||.
T Consensus 395 GLsAA~~La~~Gh~Vtv~E 413 (1028)
T PRK06567 395 GFSLSYYLLRSGHNVTAID 413 (1028)
T ss_pred HHHHHHHHHhCCCeEEEEc
Confidence 8999999999999999995
No 87
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=57.92 E-value=7.1 Score=28.20 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=18.2
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|++.|..|.+.|++|+|+.
T Consensus 12 ~G~~~A~~La~~g~~V~vle 31 (410)
T PRK12409 12 TGVTTAYALAQRGYQVTVFD 31 (410)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999995
No 88
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=57.86 E-value=6.8 Score=27.97 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.+.|++|+|+
T Consensus 16 aGl~~A~~La~~G~~V~li 34 (391)
T PRK08020 16 VGAALALGLAQHGFSVAVL 34 (391)
T ss_pred HHHHHHHHHhcCCCEEEEE
Confidence 3789999999999999999
No 89
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=57.73 E-value=7 Score=29.98 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=18.4
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
--|+.+|..|++.|++|+||
T Consensus 20 ~aGL~aA~~l~~~G~~v~vf 39 (461)
T PLN02172 20 AAGLVAARELRREGHTVVVF 39 (461)
T ss_pred HHHHHHHHHHHhcCCeEEEE
Confidence 34889999999999999999
No 90
>PRK06185 hypothetical protein; Provisional
Probab=57.30 E-value=7.1 Score=28.03 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=17.6
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
=|++.|..|+++|++|+|+
T Consensus 17 ~Gl~~A~~La~~G~~v~li 35 (407)
T PRK06185 17 AGMMLGLLLARAGVDVTVL 35 (407)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 3789999999999999999
No 91
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=56.53 E-value=7.3 Score=31.93 Aligned_cols=18 Identities=28% Similarity=0.080 Sum_probs=17.4
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|++.|..|++.|++|+||
T Consensus 93 GLalAlaL~r~Gi~V~V~ 110 (668)
T PLN02927 93 GLVFALAAKKKGFDVLVF 110 (668)
T ss_pred HHHHHHHHHhcCCeEEEE
Confidence 789999999999999999
No 92
>PRK08013 oxidoreductase; Provisional
Probab=55.80 E-value=7.9 Score=28.15 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=17.2
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.+.|++|+|+
T Consensus 15 Gl~~A~~La~~G~~v~vi 32 (400)
T PRK08013 15 GLAVACGLQGSGLRVAVL 32 (400)
T ss_pred HHHHHHHHhhCCCEEEEE
Confidence 789999999999999999
No 93
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=55.04 E-value=8.7 Score=27.27 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=17.7
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+++|..|.+.|++|+|+.
T Consensus 17 Gl~~A~~L~~~G~~v~v~E 35 (388)
T PRK07608 17 GASLALALAQSGLRVALLA 35 (388)
T ss_pred HHHHHHHHHhCCCeEEEEe
Confidence 7899999999999999993
No 94
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=54.74 E-value=8.4 Score=27.33 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=17.0
Q ss_pred CchHHHHHhhc---CceeEEe
Q 043447 9 GSPRRSALKKA---VTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~---g~~v~vf 26 (65)
|+++|..|+++ |++|+|+
T Consensus 15 Gl~~A~~L~~~~~~G~~v~v~ 35 (395)
T PRK05732 15 GATLALALSRLSHGGLPVALI 35 (395)
T ss_pred HHHHHHHhhhcccCCCEEEEE
Confidence 78999999998 9999999
No 95
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=52.90 E-value=9.6 Score=28.44 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.++|++|.|+
T Consensus 17 G~~aA~~La~~G~~V~ll 34 (428)
T PRK10157 17 GSVAALVLAREGAQVLVI 34 (428)
T ss_pred HHHHHHHHHhCCCeEEEE
Confidence 789999999999999999
No 96
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=52.81 E-value=9.3 Score=27.45 Aligned_cols=18 Identities=33% Similarity=0.224 Sum_probs=17.2
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|++.|..|.+.|++|+|+
T Consensus 18 Gl~~A~~La~~G~~v~li 35 (392)
T PRK08773 18 GAACALALADAGLSVALV 35 (392)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 789999999999999999
No 97
>PRK06116 glutathione reductase; Validated
Probab=52.64 E-value=9.9 Score=28.16 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+++|..|.+.|++|+|+.
T Consensus 15 aG~~aA~~~a~~G~~V~liE 34 (450)
T PRK06116 15 GGIASANRAAMYGAKVALIE 34 (450)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999995
No 98
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=52.43 E-value=9.6 Score=27.60 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=17.2
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.+.|++|.|+
T Consensus 12 G~~aA~~La~~G~~V~l~ 29 (388)
T TIGR02023 12 GATAAETLARAGIETILL 29 (388)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 789999999999999999
No 99
>PRK06184 hypothetical protein; Provisional
Probab=52.42 E-value=9.4 Score=28.77 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=17.4
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.+.|++|+|+
T Consensus 15 Gl~~A~~La~~Gi~v~vi 32 (502)
T PRK06184 15 GLTLAIELARRGVSFRLI 32 (502)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 789999999999999999
No 100
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=52.31 E-value=16 Score=18.91 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=17.5
Q ss_pred cceeeecChhHHHHHHHHHHC
Q 043447 42 AQFFMPNDSRFRKLVDCWLER 62 (65)
Q Consensus 42 AQYFTar~~~F~~~v~~w~~~ 62 (65)
..++.++-.+|+++|++|...
T Consensus 5 p~vi~~d~~~Fr~lVQ~LTG~ 25 (31)
T PF05678_consen 5 PTVIHTDPSNFRALVQRLTGA 25 (31)
T ss_pred CEEEEeCHHHHHHHHHHhHCc
Confidence 468888999999999998643
No 101
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=52.15 E-value=11 Score=29.22 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=15.0
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-+++|.+.||+|||+.
T Consensus 40 ~l~~~La~rGH~VTvi~ 56 (507)
T PHA03392 40 VYVEALAERGHNVTVIK 56 (507)
T ss_pred HHHHHHHHcCCeEEEEe
Confidence 45899999999999993
No 102
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=51.72 E-value=11 Score=27.93 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|.++|..|++.|++|+|+-
T Consensus 14 aG~~aA~~l~~~g~~V~liE 33 (438)
T PRK07251 14 AGKTLAAKLASAGKKVALVE 33 (438)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 37899999999999999996
No 103
>PRK06126 hypothetical protein; Provisional
Probab=51.46 E-value=9.8 Score=28.90 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=17.4
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|++.|..|.+.|++|+|+
T Consensus 19 GL~~Al~La~~G~~v~vi 36 (545)
T PRK06126 19 GLALALDLGRRGVDSILV 36 (545)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 789999999999999999
No 104
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=51.37 E-value=11 Score=28.28 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.+.|++|+||
T Consensus 151 aGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 151 AGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred HHHHHHHHHHhCCCeEEEE
Confidence 4899999999999999999
No 105
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.04 E-value=11 Score=27.95 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=18.4
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.-|.|+|+.|.+.|+.|+++.
T Consensus 10 ~sG~s~a~~l~~~G~~V~~~D 30 (459)
T PRK02705 10 RSGIAAARLLKAQGWEVVVSD 30 (459)
T ss_pred HHHHHHHHHHHHCCCEEEEEC
Confidence 347899999999999999993
No 106
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=50.69 E-value=10 Score=29.05 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
=|++||..|...|++|+|+
T Consensus 223 AGl~AA~~la~~G~~v~li 241 (515)
T TIGR03140 223 AGAAAAIYAARKGLRTAMV 241 (515)
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 3899999999999999999
No 107
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=49.88 E-value=12 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+|.|..|.+.|++|+|+.
T Consensus 11 ~G~s~A~~L~~~G~~V~vle 30 (365)
T TIGR03364 11 LGLAHAYAAARRGLSVTVIE 30 (365)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999993
No 108
>PRK10262 thioredoxin reductase; Provisional
Probab=49.67 E-value=11 Score=26.40 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=17.5
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+++|..|.+.|++|.||.
T Consensus 18 Gl~aA~~l~~~g~~~~~ie 36 (321)
T PRK10262 18 GYTAAVYAARANLQPVLIT 36 (321)
T ss_pred HHHHHHHHHHCCCCeEEEE
Confidence 7899999999999999993
No 109
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=49.61 E-value=11 Score=29.48 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.3
Q ss_pred CCchHHHHHhhcCceeEEee-ec
Q 043447 8 YGSPRRSALKKAVTRVELWL-GR 29 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~-GR 29 (65)
=|+.+|+.|++.|+.|+||+ ++
T Consensus 74 DGlv~AR~L~~~G~~V~v~~~~~ 96 (462)
T PLN03049 74 DGLVAARHLHHFGYKPSICYPKR 96 (462)
T ss_pred HHHHHHHHHHHCCCceEEEEECC
Confidence 37899999999999999996 54
No 110
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=49.30 E-value=20 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=21.5
Q ss_pred ccceeeecChh-HHHHHHHHHHCCCC
Q 043447 41 AAQFFMPNDSR-FRKLVDCWLERGLV 65 (65)
Q Consensus 41 GAQYFTar~~~-F~~~v~~w~~~G~v 65 (65)
|=-||+|+|++ |...++.+++.|++
T Consensus 163 gRGyFiA~s~eef~ek~e~l~~~gvi 188 (361)
T COG1759 163 GRGYFIASSPEEFYEKAERLLKRGVI 188 (361)
T ss_pred CceEEEEcCHHHHHHHHHHHHHcCCc
Confidence 66799998765 99999999998875
No 111
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=48.68 E-value=13 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=18.2
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+|.|-.|.+.|++|+|+.
T Consensus 15 ~Gls~A~~La~~G~~V~vie 34 (387)
T COG0665 15 VGLSAAYYLAERGADVTVLE 34 (387)
T ss_pred HHHHHHHHHHHcCCEEEEEe
Confidence 37899999999999999994
No 112
>PLN02852 ferredoxin-NADP+ reductase
Probab=48.41 E-value=12 Score=29.37 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.9
Q ss_pred CCchHHHHHhh--cCceeEEe
Q 043447 8 YGSPRRSALKK--AVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~--~g~~v~vf 26 (65)
=|+++|..|.+ .|++|+||
T Consensus 37 AGl~AA~~L~~~~~g~~Vtv~ 57 (491)
T PLN02852 37 AGFYTADKLLKAHDGARVDII 57 (491)
T ss_pred HHHHHHHHHHhhCCCCeEEEE
Confidence 37899999986 79999999
No 113
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=48.34 E-value=13 Score=26.69 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+|.|..|.+.|+.|+|+
T Consensus 11 ~Gls~A~~l~~~g~~V~vl 29 (416)
T PRK00711 11 IGVTSAWYLAQAGHEVTVI 29 (416)
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 4899999999999999999
No 114
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=48.01 E-value=13 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.011 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|++.|-.|++.|++|+|+.
T Consensus 14 ~G~s~A~~L~~~g~~V~lie 33 (376)
T PRK11259 14 MGSAAGYYLARRGLRVLGLD 33 (376)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999994
No 115
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=47.95 E-value=12 Score=23.90 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=16.4
Q ss_pred CCCchHHHHHhhcCce-eEEe
Q 043447 7 SYGSPRRSALKKAVTR-VELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~-v~vf 26 (65)
-.|+++|..|++.|.. |+||
T Consensus 7 ~aGl~~a~~l~~~g~~~v~v~ 27 (203)
T PF13738_consen 7 PAGLAAAAHLLERGIDPVVVL 27 (203)
T ss_dssp HHHHHHHHHHHHTT---EEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEE
Confidence 4589999999999999 9999
No 116
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=47.38 E-value=8.6 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.6
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
++.|..-|..|.+.||+|++|
T Consensus 8 G~~G~AlA~~la~~g~~V~l~ 28 (157)
T PF01210_consen 8 GNWGTALAALLADNGHEVTLW 28 (157)
T ss_dssp SHHHHHHHHHHHHCTEEEEEE
T ss_pred CHHHHHHHHHHHHcCCEEEEE
Confidence 456778899999999999999
No 117
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=47.23 E-value=13 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.++|++|.|+
T Consensus 11 AG~~aA~~la~~G~~V~ll 29 (398)
T TIGR02028 11 AGASAAETLASAGIQTFLL 29 (398)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 4789999999999999999
No 118
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=47.23 E-value=16 Score=26.20 Aligned_cols=17 Identities=18% Similarity=-0.103 Sum_probs=15.2
Q ss_pred chHHHHHhhcCceeEEe
Q 043447 10 SPRRSALKKAVTRVELW 26 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf 26 (65)
+.-|++|++.||+|++.
T Consensus 13 l~lA~~L~~~Gh~V~~~ 29 (392)
T TIGR01426 13 LGVVEELVARGHRVTYA 29 (392)
T ss_pred HHHHHHHHhCCCeEEEE
Confidence 45689999999999999
No 119
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=47.09 E-value=30 Score=25.47 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=36.5
Q ss_pred CchHHHHHhhc--CceeEEee-ec------cc-----CC-----------------------CCcccccccceeeecChh
Q 043447 9 GSPRRSALKKA--VTRVELWL-GR------MI-----GS-----------------------QPLIFDHAAQFFMPNDSR 51 (65)
Q Consensus 9 ~~~~A~~L~~~--g~~v~vf~-GR------ma-----~~-----------------------~~~~fDHGAQYFTar~~~ 51 (65)
|++.|.+|.+. |++|.|+. +. +- +. +.....++.+|.+++.++
T Consensus 11 Gl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~~Y~~I~r~~ 90 (370)
T TIGR01789 11 GGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKTAYRSMTSTR 90 (370)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCCCceEEEHHH
Confidence 78999999987 99999992 11 00 00 002233457899999999
Q ss_pred HHHHHHHHHHC
Q 043447 52 FRKLVDCWLER 62 (65)
Q Consensus 52 F~~~v~~w~~~ 62 (65)
|.+.+.+.+..
T Consensus 91 f~~~l~~~l~~ 101 (370)
T TIGR01789 91 FHEGLLQAFPE 101 (370)
T ss_pred HHHHHHHhhcc
Confidence 99988665543
No 120
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=47.01 E-value=13 Score=28.72 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|+..|++|+||
T Consensus 148 aGL~aA~~l~~~G~~V~v~ 166 (564)
T PRK12771 148 AGLSAAYHLRRMGHAVTIF 166 (564)
T ss_pred HHHHHHHHHHHCCCeEEEE
Confidence 4899999999999999999
No 121
>PRK08244 hypothetical protein; Provisional
Probab=46.93 E-value=13 Score=27.88 Aligned_cols=19 Identities=21% Similarity=0.015 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.+.|++|+|+
T Consensus 13 aGl~lA~~L~~~G~~v~vi 31 (493)
T PRK08244 13 VGLMLASELALAGVKTCVI 31 (493)
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 3789999999999999999
No 122
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=46.84 E-value=14 Score=26.03 Aligned_cols=20 Identities=20% Similarity=0.036 Sum_probs=18.2
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+|.|-.|.+.|.+|+|+.
T Consensus 11 ~G~s~A~~La~~g~~V~l~e 30 (380)
T TIGR01377 11 MGCFAAYHLAKHGKKTLLLE 30 (380)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999994
No 123
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=46.57 E-value=13 Score=30.68 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCchHHHHHhhcCceeEEe-----e-eccc
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMI 31 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma 31 (65)
-|..||..|.+.|+.|.+. + |||+
T Consensus 135 AGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 135 AGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 4789999999999999998 6 9999
No 124
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=46.38 E-value=23 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=24.3
Q ss_pred chHHHHHhhcCceeEEe-------e--ecccCCCCcccccccceeeecC
Q 043447 10 SPRRSALKKAVTRVELW-------L--GRMIGSQPLIFDHAAQFFMPND 49 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf-------~--GRma~~~~~~fDHGAQYFTar~ 49 (65)
+|-+..|++.|+.|+.. + |-|++ +.||=-|.|-.+
T Consensus 20 as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP-----~~HGEvfVt~DG 63 (255)
T cd03113 20 ASLGRLLKARGLKVTAQKLDPYLNVDPGTMSP-----YQHGEVFVTDDG 63 (255)
T ss_pred HHHHHHHHHCCCeEEEEeecccccCCCCCCCC-----ccceeEEEccCC
Confidence 56778999999999998 2 77772 345555555433
No 125
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=46.35 E-value=73 Score=20.64 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=35.4
Q ss_pred CCCCchHHHHHhhcCceeEEeee-------ccc---------CCCCcccccccceeeecChhHHHHHHHHHHC
Q 043447 6 SSYGSPRRSALKKAVTRVELWLG-------RMI---------GSQPLIFDHAAQFFMPNDSRFRKLVDCWLER 62 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf~G-------Rma---------~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~ 62 (65)
++-|..=+..|+++||.|.-+.. +.+ +.....-+--.=++|+.|+....+++++...
T Consensus 19 GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 19 GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 45677889999999999866511 111 1111112233456778999999999998765
No 126
>PRK10015 oxidoreductase; Provisional
Probab=46.24 E-value=14 Score=27.69 Aligned_cols=19 Identities=21% Similarity=0.087 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.++|++|.|+
T Consensus 16 AG~~aA~~LA~~G~~Vlli 34 (429)
T PRK10015 16 AGSVAALVMARAGLDVLVI 34 (429)
T ss_pred HHHHHHHHHHhCCCeEEEE
Confidence 3789999999999999999
No 127
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=45.60 E-value=13 Score=29.94 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=19.7
Q ss_pred CCchHHHHHhhcCceeEEee-ecc
Q 043447 8 YGSPRRSALKKAVTRVELWL-GRM 30 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~-GRm 30 (65)
=|+.+|+.|+..|.+|+||. ++.
T Consensus 150 DGLVaAR~L~~~G~~V~V~~~~~~ 173 (544)
T PLN02918 150 DGLVAARHLHHFGYKPFVCYPKRT 173 (544)
T ss_pred HHHHHHHHHHHCCCceEEEEcCCC
Confidence 37899999999999999996 543
No 128
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=45.58 E-value=14 Score=26.40 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=16.6
Q ss_pred CchHHHHHhhcC--ceeEEe
Q 043447 9 GSPRRSALKKAV--TRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g--~~v~vf 26 (65)
|+++|..|.++| ++|+|+
T Consensus 13 Gl~~A~~L~~~g~g~~v~li 32 (403)
T PRK07333 13 GLALAVALKQAAPHLPVTVV 32 (403)
T ss_pred HHHHHHHHhcCCCCCEEEEE
Confidence 789999999996 999999
No 129
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=45.56 E-value=39 Score=31.24 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCCCchHHHHHhhcCceeEEee--ecccCCCCcccccccceeeecChhHHHHHHHHHHCCC
Q 043447 6 SSYGSPRRSALKKAVTRVELWL--GRMIGSQPLIFDHAAQFFMPNDSRFRKLVDCWLERGL 64 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf~--GRma~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G~ 64 (65)
+.-|+-+|..|-++||.|+||. -|. ++-.-.|-+-+...---.++.|+-+.++|+
T Consensus 1794 gpaglaaadqlnk~gh~v~vyer~dr~----ggll~ygipnmkldk~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1794 GPAGLAAADQLNKAGHTVTVYERSDRV----GGLLMYGIPNMKLDKFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred CchhhhHHHHHhhcCcEEEEEEecCCc----CceeeecCCccchhHHHHHHHHHHHHhhCc
Confidence 3458999999999999999992 121 112333333333333445666666666664
No 130
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=44.56 E-value=15 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=17.2
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.++|++|.|+
T Consensus 51 G~~aA~~LA~~G~~Vlll 68 (450)
T PLN00093 51 GACAAETLAKGGIETFLI 68 (450)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 789999999999999999
No 131
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=44.45 E-value=12 Score=27.88 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.4
Q ss_pred hHHHHHhhcCceeEEe
Q 043447 11 PRRSALKKAVTRVELW 26 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf 26 (65)
.-+++|.+.||+||++
T Consensus 18 ~l~~~L~~rGH~VTvl 33 (500)
T PF00201_consen 18 PLAEELAERGHNVTVL 33 (500)
T ss_dssp HHHHHHHHH-TTSEEE
T ss_pred HHHHHHHhcCCceEEE
Confidence 4588999999999999
No 132
>PRK10565 putative carbohydrate kinase; Provisional
Probab=44.37 E-value=15 Score=28.87 Aligned_cols=22 Identities=18% Similarity=-0.019 Sum_probs=19.2
Q ss_pred CCchHHHHHhhcCceeEEee-ec
Q 043447 8 YGSPRRSALKKAVTRVELWL-GR 29 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~-GR 29 (65)
=|+.+|+.|.+.|++|+||. +.
T Consensus 75 DG~v~AR~L~~~G~~V~v~~~~~ 97 (508)
T PRK10565 75 DGYVVARLAQAAGIDVTLLAQES 97 (508)
T ss_pred HHHHHHHHHHHCCCceEEEEECC
Confidence 47899999999999999996 53
No 133
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=44.34 E-value=17 Score=23.56 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.3
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|..-|+.|.++|+.|++|
T Consensus 11 ~mG~~~a~~L~~~g~~v~~~ 30 (163)
T PF03446_consen 11 NMGSAMARNLAKAGYEVTVY 30 (163)
T ss_dssp HHHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEee
Confidence 34667899999999999999
No 134
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=44.32 E-value=19 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.036 Sum_probs=15.5
Q ss_pred chHHHHHhhcCceeEEee
Q 043447 10 SPRRSALKKAVTRVELWL 27 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf~ 27 (65)
+.-|++|++.||+|+++.
T Consensus 18 l~la~~L~~rGh~V~~~t 35 (401)
T cd03784 18 VALAWALRAAGHEVRVAT 35 (401)
T ss_pred HHHHHHHHHCCCeEEEee
Confidence 356899999999999995
No 135
>PTZ00445 p36-lilke protein; Provisional
Probab=44.29 E-value=61 Score=23.58 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=33.4
Q ss_pred HHHHhhcCceeEEee--eccc----CCCCcccccccceeeecChhHHHHHHHHHHCCC
Q 043447 13 RSALKKAVTRVELWL--GRMI----GSQPLIFDHAAQFFMPNDSRFRKLVDCWLERGL 64 (65)
Q Consensus 13 A~~L~~~g~~v~vf~--GRma----~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G~ 64 (65)
.+.|+++|+++-++. =-|. +|+...-.-+--+.+--+|+|..++.++.+.|+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I 92 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNI 92 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCC
Confidence 467999999999982 2222 222111102233445568999999999998875
No 136
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=44.05 E-value=15 Score=28.58 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|++||..|++.|++|+|+-
T Consensus 15 AGL~AA~~lar~g~~V~liE 34 (555)
T TIGR03143 15 AGLSAGIYAGRAKLDTLIIE 34 (555)
T ss_pred HHHHHHHHHHHCCCCEEEEe
Confidence 37899999999999999994
No 137
>PLN02985 squalene monooxygenase
Probab=43.48 E-value=16 Score=28.34 Aligned_cols=19 Identities=37% Similarity=0.253 Sum_probs=17.6
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|.+|.+.|++|+|+
T Consensus 54 aGlalA~aLa~~G~~V~vl 72 (514)
T PLN02985 54 GGSALAYALAKDGRRVHVI 72 (514)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 3789999999999999999
No 138
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=43.27 E-value=17 Score=25.32 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHhhcCceeEEee-ecccCCCCcc-----cccccceeeecChhHHHHHHHH
Q 043447 13 RSALKKAVTRVELWL-GRMIGSQPLI-----FDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 13 A~~L~~~g~~v~vf~-GRma~~~~~~-----fDHGAQYFTar~~~F~~~v~~w 59 (65)
-+.|++.|..+.|++ |+-.+..... --.||-||+-.-.+-.++++.|
T Consensus 160 i~~L~~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~~v~~~~~~ 212 (213)
T cd02069 160 AEEMNRRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASRALGVANKL 212 (213)
T ss_pred HHHHHhcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHHHHHHHHHh
Confidence 356888999999999 8765433211 1269999998887788877776
No 139
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=42.74 E-value=16 Score=28.79 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=16.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+.+|..|.+.|+.|++|
T Consensus 12 sGL~a~k~l~e~g~~~~~f 30 (531)
T PF00743_consen 12 SGLAAAKNLLEEGLEVTCF 30 (531)
T ss_dssp HHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHCCCCCeEE
Confidence 3789999999999999999
No 140
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=42.10 E-value=17 Score=27.09 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=18.3
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|.+||..+.+.|++|+|+
T Consensus 12 paG~~aA~~aa~~G~~V~li 31 (446)
T TIGR01424 12 SGGVRAARLAANHGAKVAIA 31 (446)
T ss_pred HHHHHHHHHHHhCCCcEEEE
Confidence 34889999999999999999
No 141
>PTZ00367 squalene epoxidase; Provisional
Probab=41.36 E-value=18 Score=28.73 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=17.2
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.+.|++|+|+
T Consensus 45 GlalA~aLar~G~~V~Vl 62 (567)
T PTZ00367 45 GPVLAKALSKQGRKVLML 62 (567)
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 789999999999999999
No 142
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=41.27 E-value=20 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=16.9
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|...+.+|+|+
T Consensus 11 Gl~aA~~l~~~~~~v~ii 28 (201)
T PF07992_consen 11 GLSAALELARPGAKVLII 28 (201)
T ss_dssp HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCeEEEE
Confidence 688999999999999998
No 143
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=41.27 E-value=19 Score=26.63 Aligned_cols=21 Identities=33% Similarity=0.183 Sum_probs=18.6
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.=|+++|..|.+.|++|+|+-
T Consensus 13 paGl~aA~~la~~g~~V~lie 33 (441)
T PRK08010 13 KAGKTLAVTLAKAGWRVALIE 33 (441)
T ss_pred HhHHHHHHHHHHCCCeEEEEc
Confidence 348899999999999999995
No 144
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=40.83 E-value=18 Score=25.81 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=17.4
Q ss_pred CCCchHHHHHhhcCceeE---Ee
Q 043447 7 SYGSPRRSALKKAVTRVE---LW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~---vf 26 (65)
.-|+.|.+.|++.|++|. ||
T Consensus 92 ~~Gl~Ai~~L~~~Gi~vn~T~if 114 (222)
T PRK12656 92 PAGLAAIKTLKAEGYHITATAIY 114 (222)
T ss_pred HHHHHHHHHHHHCCCceEEeeeC
Confidence 458899999999999999 66
No 145
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=40.66 E-value=18 Score=27.64 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=17.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|++.|..|.+.|++|+|+
T Consensus 35 Gl~lA~~L~~~G~~v~vi 52 (547)
T PRK08132 35 GLALAIDLAQQGVPVVLL 52 (547)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 789999999999999999
No 146
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=40.40 E-value=75 Score=18.42 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=30.8
Q ss_pred CchHHHHHhhcC---ceeEEee-eccc---CCCCcccccccceeeecChhHHHHHHHHHHCC
Q 043447 9 GSPRRSALKKAV---TRVELWL-GRMI---GSQPLIFDHAAQFFMPNDSRFRKLVDCWLERG 63 (65)
Q Consensus 9 ~~~~A~~L~~~g---~~v~vf~-GRma---~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G 63 (65)
++.-++++...| ++|+||+ |--. ... ..=-....+.+..+++++.+.|
T Consensus 20 ~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~~-------~~~~~~~~~~~~~~l~~l~~~g 74 (122)
T PF02635_consen 20 ALRLANAAAAMGDYGHDVVVFFHGDGVKLALKD-------QKPNPEGDPPLQELLKELKEAG 74 (122)
T ss_dssp HHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBTT-------CHCGGCTSHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcEEEEEEchHHHHHHhc-------ccccccccccHHHHHHHHHhcC
Confidence 344577888888 9999997 5332 220 0001124677888999988876
No 147
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=40.20 E-value=19 Score=27.59 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.3
Q ss_pred CCchHHHHHhhcCceeEEe---e-eccc
Q 043447 8 YGSPRRSALKKAVTRVELW---L-GRMI 31 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf---~-GRma 31 (65)
=|+++|..|.+.|++|+|+ + |+..
T Consensus 222 aGl~aA~~la~~G~~v~li~~~~GG~~~ 249 (517)
T PRK15317 222 AGAAAAIYAARKGIRTGIVAERFGGQVL 249 (517)
T ss_pred HHHHHHHHHHHCCCcEEEEecCCCCeee
Confidence 3889999999999999999 3 5554
No 148
>PRK06370 mercuric reductase; Validated
Probab=40.06 E-value=20 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.2
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|.++|..|.+.|++|.|+.
T Consensus 16 aG~~aA~~aa~~G~~v~lie 35 (463)
T PRK06370 16 AGPPLAARAAGLGMKVALIE 35 (463)
T ss_pred HHHHHHHHHHhCCCeEEEEe
Confidence 47899999999999999994
No 149
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=39.77 E-value=21 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=18.7
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.-|+.+|..|.+.|++|+|+.
T Consensus 15 paG~~aA~~la~~G~~v~liE 35 (461)
T PRK05249 15 PAGEGAAMQAAKLGKRVAVIE 35 (461)
T ss_pred HHHHHHHHHHHhCCCEEEEEe
Confidence 348899999999999999994
No 150
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=39.74 E-value=20 Score=25.74 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
.|+++|..|++.|++|+|+
T Consensus 29 aGl~aA~~l~~~g~~v~li 47 (352)
T PRK12770 29 AGLAAAGYLACLGYEVHVY 47 (352)
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 4789999999999999999
No 151
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=39.31 E-value=22 Score=25.11 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+.+|..|.++|++|.|+
T Consensus 36 AGl~AA~~la~~G~~V~li 54 (257)
T PRK04176 36 SGLTAAYYLAKAGLKVAVF 54 (257)
T ss_pred HHHHHHHHHHhCCCeEEEE
Confidence 4789999999999999999
No 152
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=38.47 E-value=15 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred chHHHHHhhcCceeEEe-------e--ecccCCCCcccccccceeeecC
Q 043447 10 SPRRSALKKAVTRVELW-------L--GRMIGSQPLIFDHAAQFFMPND 49 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf-------~--GRma~~~~~~fDHGAQYFTar~ 49 (65)
+|-+..|+..|+.|++. + |-|++ +.||=-|.|-.+
T Consensus 21 aSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP-----~qHGEVfVt~DG 64 (276)
T PF06418_consen 21 ASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSP-----YQHGEVFVTDDG 64 (276)
T ss_dssp HHHHHHHHCTT--EEEEEEE-SSSSSCCCS-C-----CTCS-EEE-TTS
T ss_pred HHHHHHHHhCCeeeeeeeeccccccCCCCCCC-----cCccceeEecCc
Confidence 56778999999999998 2 77763 566777776544
No 153
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=38.38 E-value=27 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.8
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-|++|.+.||+|+|+.
T Consensus 21 ~la~~L~~~G~~V~v~~ 37 (392)
T cd03805 21 DAALALQSRGHEVTIYT 37 (392)
T ss_pred HHHHHHHhCCCeEEEEc
Confidence 45789999999999995
No 154
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.22 E-value=23 Score=26.57 Aligned_cols=20 Identities=25% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|.++|..|++.|++|+++-
T Consensus 27 ~G~~~A~~L~~~G~~V~~~d 46 (480)
T PRK01438 27 SGFAAADALLELGARVTVVD 46 (480)
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 47789999999999999983
No 155
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=38.13 E-value=21 Score=27.89 Aligned_cols=19 Identities=32% Similarity=0.238 Sum_probs=17.9
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+.+|..|.+.|++|+||
T Consensus 11 AGleaA~~LAr~G~~V~Li 29 (433)
T TIGR00137 11 AGSEAAWQLAQAGVPVILY 29 (433)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 4889999999999999999
No 156
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=38.01 E-value=23 Score=24.61 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=17.4
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+-+|..|++.|++|+|+
T Consensus 147 ~gle~A~~~~~~G~~v~l~ 165 (415)
T COG0446 147 IGLEAAEAAAKRGKKVTLI 165 (415)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 4778999999999999999
No 157
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=37.96 E-value=25 Score=26.16 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=18.9
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+..|.|-|..|+++|+.|+++
T Consensus 108 GlmG~slA~~l~~~G~~V~~~ 128 (374)
T PRK11199 108 GQLGRLFAKMLTLSGYQVRIL 128 (374)
T ss_pred ChhhHHHHHHHHHCCCeEEEe
Confidence 567899999999999999988
No 158
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=37.58 E-value=22 Score=27.20 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|++.|..|.+.|++|+|+
T Consensus 21 ~Gl~lA~~L~~~G~~v~v~ 39 (538)
T PRK06183 21 VGLTLANLLGQYGVRVLVL 39 (538)
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 3789999999999999999
No 159
>PRK05380 pyrG CTP synthetase; Validated
Probab=37.36 E-value=34 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=24.8
Q ss_pred chHHHHHhhcCceeEEe-------e--ecccCCCCcccccccceeeecC
Q 043447 10 SPRRSALKKAVTRVELW-------L--GRMIGSQPLIFDHAAQFFMPND 49 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf-------~--GRma~~~~~~fDHGAQYFTar~ 49 (65)
+|-+..|++.|+.|+.. + |-|++ +.||=-|.|-.+
T Consensus 22 as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP-----~~HGEvfVt~DG 65 (533)
T PRK05380 22 ASLGRLLKARGLKVTIQKLDPYINVDPGTMSP-----YQHGEVFVTDDG 65 (533)
T ss_pred HHHHHHHHhCCCceEEEeeccccccCCCCCCC-----ccceeEEEccCC
Confidence 56778999999999998 2 77772 445555555443
No 160
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=37.01 E-value=20 Score=21.88 Aligned_cols=25 Identities=8% Similarity=0.391 Sum_probs=19.1
Q ss_pred ee-ecccCCCCcccccccceeeecCh
Q 043447 26 WL-GRMIGSQPLIFDHAAQFFMPNDS 50 (65)
Q Consensus 26 f~-GRma~~~~~~fDHGAQYFTar~~ 50 (65)
|+ |++.+++.-.++.|+-||.-.+.
T Consensus 50 ~v~g~i~~~~~vlV~lG~~~~vE~s~ 75 (120)
T PF02996_consen 50 FVPGKIPDTDKVLVSLGAGYYVEMSL 75 (120)
T ss_dssp EEEEE-SSTTEEEEEEETTEEEEEEH
T ss_pred EEEEEeCCCCEEEEEeeCCeEEEecH
Confidence 35 78878888889999999986544
No 161
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=35.95 E-value=60 Score=26.32 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCchHHHHHhhcCceeEE--ee--eccc-------CCCCcccccccceeeecChhHHHHHHHHHHCC
Q 043447 8 YGSPRRSALKKAVTRVEL--WL--GRMI-------GSQPLIFDHAAQFFMPNDSRFRKLVDCWLERG 63 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~v--f~--GRma-------~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G 63 (65)
-|+++|..|...+-.|+| |. +|+- .+.+..||-|..=++--+|.=...++-+.+-|
T Consensus 22 SGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 22 SGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred hHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 489999999999998876 72 3333 23455799999999988885444444444444
No 162
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=35.86 E-value=33 Score=20.23 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=13.5
Q ss_pred HHHHHhhcCceeEEee-ecc
Q 043447 12 RRSALKKAVTRVELWL-GRM 30 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~-GRm 30 (65)
....|++.+...|+|+ |..
T Consensus 23 ~~~~l~~~~i~at~fv~~~~ 42 (123)
T PF01522_consen 23 LLPLLKKYGIPATFFVIGSW 42 (123)
T ss_dssp HHHHHHHTT--EEEEE-HHH
T ss_pred HHHHHHhcccceeeeecccc
Confidence 4678999999999996 644
No 163
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.81 E-value=20 Score=25.57 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCCCchHHHHHhhcCceeEEee-ecccCCCCcccccccceeeecChhHHHHHHHH
Q 043447 6 SSYGSPRRSALKKAVTRVELWL-GRMIGSQPLIFDHAAQFFMPNDSRFRKLVDCW 59 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf~-GRma~~~~~~fDHGAQYFTar~~~F~~~v~~w 59 (65)
+..|.+-|..|.++||+|++|- -.-.+.....-|.-.-++++.++....+++.+
T Consensus 13 G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l 67 (308)
T PRK14619 13 GAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQV 67 (308)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence 4567788999999999999883 21111111111222344555666666666554
No 164
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=35.75 E-value=25 Score=26.85 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=20.2
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
++||..=|+.|.+.||.|++|
T Consensus 10 GswGTALA~~la~ng~~V~lw 30 (329)
T COG0240 10 GSWGTALAKVLARNGHEVRLW 30 (329)
T ss_pred ChHHHHHHHHHHhcCCeeEEE
Confidence 789999999999999999999
No 165
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=35.35 E-value=24 Score=24.87 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.7
Q ss_pred CCCCchHHHHHhhcCceeE
Q 043447 6 SSYGSPRRSALKKAVTRVE 24 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~ 24 (65)
..-|+.|++.|++.|++|.
T Consensus 87 T~~Gl~A~~~L~~~Gi~v~ 105 (213)
T TIGR00875 87 TSEGLKAVKILKKEGIKTN 105 (213)
T ss_pred CHHHHHHHHHHHHCCCcee
Confidence 3468899999999999999
No 166
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=35.33 E-value=26 Score=24.77 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=18.3
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|+++|..|.+.|+.|.|+
T Consensus 31 pAGL~aA~~la~~G~~V~vl 50 (254)
T TIGR00292 31 PSGLTAAYYLAKNGLKVCVL 50 (254)
T ss_pred HHHHHHHHHHHHCCCcEEEE
Confidence 35889999999999999999
No 167
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=35.23 E-value=27 Score=19.40 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=14.8
Q ss_pred cChhHHHHHHHHHHCCCC
Q 043447 48 NDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 48 r~~~F~~~v~~w~~~G~v 65 (65)
..+.|..+++.|+++|.+
T Consensus 33 ~~k~~~~ll~~l~~~g~l 50 (59)
T PF09106_consen 33 PPKLFNALLEALVAEGRL 50 (59)
T ss_dssp -HCCHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 456799999999999874
No 168
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=35.11 E-value=31 Score=26.07 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=18.2
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|++-|..|.++||+|++|
T Consensus 13 ~~G~~~A~~La~~G~~V~~~ 32 (415)
T PRK11064 13 YIGLPTAAAFASRQKQVIGV 32 (415)
T ss_pred hhhHHHHHHHHhCCCEEEEE
Confidence 35889999999999999999
No 169
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=34.88 E-value=38 Score=20.23 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=14.1
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
-++.|++.|++|+|+.
T Consensus 16 ~~~~L~~~g~~V~ii~ 31 (139)
T PF13477_consen 16 LAKELKKRGYDVHIIT 31 (139)
T ss_pred HHHHHHHCCCEEEEEE
Confidence 4788999999999994
No 170
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=34.72 E-value=28 Score=25.72 Aligned_cols=21 Identities=14% Similarity=-0.084 Sum_probs=18.6
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.-|+.+|..|.+.|++|.|+.
T Consensus 11 ~aGl~aA~~la~~G~~v~lie 31 (461)
T TIGR01350 11 PGGYVAAIRAAQLGLKVALVE 31 (461)
T ss_pred HHHHHHHHHHHhCCCeEEEEe
Confidence 348899999999999999994
No 171
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=34.72 E-value=33 Score=24.25 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.8
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-|+.|.+.||+|+|+.
T Consensus 28 ~la~~L~~~G~~V~v~~ 44 (405)
T TIGR03449 28 ETATELARRGIEVDIFT 44 (405)
T ss_pred HHHHHHhhCCCEEEEEe
Confidence 35789999999999995
No 172
>PRK06834 hypothetical protein; Provisional
Probab=34.57 E-value=26 Score=26.84 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=17.2
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|++.|..|.+.|++|+|+
T Consensus 15 Gl~lA~~La~~G~~v~vl 32 (488)
T PRK06834 15 GLMLAGELALAGVDVAIV 32 (488)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 789999999999999999
No 173
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=34.47 E-value=26 Score=26.31 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
=|..||.+|.+.|++|.|+
T Consensus 13 aG~~aA~~aa~~G~~V~li 31 (450)
T TIGR01421 13 GGIASARRAAEHGAKALLV 31 (450)
T ss_pred HHHHHHHHHHHCCCcEEEe
Confidence 3789999999999999999
No 174
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=34.37 E-value=28 Score=24.79 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.0
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
..|.+-|..|.++|++|++|
T Consensus 12 ~mG~~iA~~la~~G~~V~v~ 31 (308)
T PRK06129 12 LIGRAWAIVFARAGHEVRLW 31 (308)
T ss_pred HHHHHHHHHHHHCCCeeEEE
Confidence 45788899999999999999
No 175
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=34.03 E-value=39 Score=27.32 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=24.9
Q ss_pred chHHHHHhhcCceeEEe-------e--ecccCCCCcccccccceeeecC
Q 043447 10 SPRRSALKKAVTRVELW-------L--GRMIGSQPLIFDHAAQFFMPND 49 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf-------~--GRma~~~~~~fDHGAQYFTar~ 49 (65)
+|-+..|++.|+.|+.. + |-|++ +.||=-|.|-.+
T Consensus 21 as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP-----~~HGEvfVt~DG 64 (525)
T TIGR00337 21 ASIGRLLKARGLKVTIIKIDPYINIDPGTMSP-----LQHGEVFVTDDG 64 (525)
T ss_pred HHHHHHHHhCCCceEEEeecccccCCCCCCCc-----ccCceEEEcCCC
Confidence 56778899999999998 2 77772 445555555443
No 176
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=33.86 E-value=69 Score=23.80 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=31.0
Q ss_pred HHhhcCceeEEeeecccCCCCcccccccceeeecChhHHHHHHHHHHCCCC
Q 043447 15 ALKKAVTRVELWLGRMIGSQPLIFDHAAQFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 15 ~L~~~g~~v~vf~GRma~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G~v 65 (65)
++++.| +++++|....++.+. --+-.|-.-..++++..++.|.+.|++
T Consensus 141 aa~~~~--~~~~vG~v~S~D~FY-gQ~r~~~~~~~~e~~~~~~~W~~~gv~ 188 (248)
T COG2820 141 AAESLG--VTVHVGVVASSDAFY-GQERYYSGFVTPEFKESWEEWQDLGVL 188 (248)
T ss_pred HHHhcC--CceEEEEEeeccccc-ccccccccccCcchHHHHHHHHHcCch
Confidence 344444 778888887554432 111123345689999999999999864
No 177
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=33.63 E-value=30 Score=24.31 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.2
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|.+-|+.|.++|++|+||
T Consensus 5 G~mG~~mA~~L~~~G~~V~v~ 25 (288)
T TIGR01692 5 GNMGGPMAANLLKAGHPVRVF 25 (288)
T ss_pred cHhHHHHHHHHHhCCCeEEEE
Confidence 345778899999999999999
No 178
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.59 E-value=28 Score=25.79 Aligned_cols=20 Identities=10% Similarity=-0.115 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|+.+|..|++.|++|.|+.
T Consensus 15 aG~~aA~~aa~~G~~V~liE 34 (462)
T PRK06416 15 GGYVAAIRAAQLGLKVAIVE 34 (462)
T ss_pred HHHHHHHHHHHCCCcEEEEe
Confidence 47899999999999999993
No 179
>PRK10307 putative glycosyl transferase; Provisional
Probab=33.54 E-value=36 Score=24.43 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=14.8
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
--++.|.+.||+|+|+.
T Consensus 23 ~l~~~L~~~G~~V~vit 39 (412)
T PRK10307 23 EMAEWLAARGHEVRVIT 39 (412)
T ss_pred HHHHHHHHCCCeEEEEe
Confidence 45789999999999994
No 180
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=33.43 E-value=30 Score=22.58 Aligned_cols=18 Identities=17% Similarity=-0.014 Sum_probs=15.7
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|..|+..|+..|+.|+++
T Consensus 32 g~gA~~~~~~lGa~v~~~ 49 (168)
T PF01262_consen 32 GQGAAEIAKGLGAEVVVP 49 (168)
T ss_dssp HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHhHCCCEEEec
Confidence 567999999999999999
No 181
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=33.29 E-value=24 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=17.4
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|+++|..|.+.|+.|.||
T Consensus 27 paGl~aA~~La~~g~kV~v~ 46 (230)
T PF01946_consen 27 PAGLTAAYYLAKAGLKVAVI 46 (230)
T ss_dssp HHHHHHHHHHHHHTS-EEEE
T ss_pred hhHHHHHHHHHHCCCeEEEE
Confidence 34889999999999999999
No 182
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=33.22 E-value=30 Score=25.92 Aligned_cols=20 Identities=5% Similarity=-0.188 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|++||..|.+.|.+|+|+.
T Consensus 15 aG~~AA~~aa~~G~~V~lie 34 (466)
T PRK07818 15 GGYVAAIRAAQLGLKTAVVE 34 (466)
T ss_pred HHHHHHHHHHhCCCeEEEEe
Confidence 48899999999999999994
No 183
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=33.20 E-value=39 Score=26.64 Aligned_cols=21 Identities=19% Similarity=0.051 Sum_probs=19.1
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
++-|.++|+.|++.|..|+|+
T Consensus 16 G~sG~a~a~~L~~~G~~v~v~ 36 (448)
T COG0771 16 GKSGLAAARFLLKLGAEVTVS 36 (448)
T ss_pred ccccHHHHHHHHHCCCeEEEE
Confidence 456899999999999999999
No 184
>PLN02661 Putative thiazole synthesis
Probab=33.19 E-value=66 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.5
Q ss_pred CchHHHHHhhc-CceeEEee
Q 043447 9 GSPRRSALKKA-VTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~-g~~v~vf~ 27 (65)
|+++|..|.+. |.+|+|+.
T Consensus 104 Gl~AA~~La~~~g~kV~viE 123 (357)
T PLN02661 104 GLSCAYELSKNPNVKVAIIE 123 (357)
T ss_pred HHHHHHHHHHcCCCeEEEEe
Confidence 78999999865 89999994
No 185
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.00 E-value=34 Score=26.01 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|.|+|+.|++.|++|+++-
T Consensus 18 sG~s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 18 SGLAMARWCARHGARLRVAD 37 (498)
T ss_pred hHHHHHHHHHHCCCEEEEEc
Confidence 47889999999999999984
No 186
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=32.66 E-value=38 Score=25.21 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=19.1
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|++-|..|.++||+|++|
T Consensus 9 G~~G~~lA~~La~~G~~V~~~ 29 (411)
T TIGR03026 9 GYVGLPLAALLADLGHEVTGV 29 (411)
T ss_pred CchhHHHHHHHHhcCCeEEEE
Confidence 456899999999999999999
No 187
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=32.59 E-value=29 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=17.7
Q ss_pred CCCCCchHHHHHhhcCceeEEe
Q 043447 5 RSSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 5 ~~~~~~~~A~~L~~~g~~v~vf 26 (65)
|.|+...=++.|++.|..|.+|
T Consensus 15 R~Sp~~~l~~~L~~~g~~V~~~ 36 (106)
T PF03720_consen 15 RESPALELIEELKERGAEVSVY 36 (106)
T ss_dssp TT-HHHHHHHHHHHTT-EEEEE
T ss_pred ccCHHHHHHHHHHHCCCEEEEE
Confidence 5677777889999999999999
No 188
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=32.59 E-value=31 Score=25.84 Aligned_cols=20 Identities=10% Similarity=-0.164 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|+++|.+|.+.|++|.|+.
T Consensus 15 aG~~aA~~aa~~G~~v~lie 34 (472)
T PRK05976 15 GGYVAAIRAGQLGLKTALVE 34 (472)
T ss_pred HHHHHHHHHHhCCCeEEEEE
Confidence 37899999999999999994
No 189
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=32.49 E-value=37 Score=23.14 Aligned_cols=19 Identities=32% Similarity=0.226 Sum_probs=16.4
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|..-|-.|.++|++|+++.
T Consensus 3 G~~~a~~L~~~G~~V~l~~ 21 (293)
T TIGR00745 3 GSLYGAYLARAGHDVTLLA 21 (293)
T ss_pred hHHHHHHHHhCCCcEEEEe
Confidence 6667889999999999995
No 190
>PRK01362 putative translaldolase; Provisional
Probab=32.42 E-value=29 Score=24.49 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=16.6
Q ss_pred CCCCchHHHHHhhcCceeE
Q 043447 6 SSYGSPRRSALKKAVTRVE 24 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~ 24 (65)
..-|+.+++.|++.|++|.
T Consensus 87 T~~G~~a~~~L~~~Gi~v~ 105 (214)
T PRK01362 87 TPEGLKAVKALSKEGIKTN 105 (214)
T ss_pred CHHHHHHHHHHHHCCCceE
Confidence 3458899999999999999
No 191
>PHA02591 hypothetical protein; Provisional
Probab=32.21 E-value=64 Score=20.41 Aligned_cols=24 Identities=8% Similarity=0.385 Sum_probs=21.6
Q ss_pred ccceeeecChhHHHHHHHHHHCCC
Q 043447 41 AAQFFMPNDSRFRKLVDCWLERGL 64 (65)
Q Consensus 41 GAQYFTar~~~F~~~v~~w~~~G~ 64 (65)
|..||--+.++..++..+|.+.|+
T Consensus 37 ~~ryfi~~~dd~~~vA~eL~eqGl 60 (83)
T PHA02591 37 QTRYFVESEDDLISVTHELARKGF 60 (83)
T ss_pred CEEEEEeccchHHHHHHHHHHcCC
Confidence 578999999999999999999985
No 192
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=32.06 E-value=31 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=18.2
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|++.|..|.+.|++|+|+.
T Consensus 271 aG~s~A~~La~~G~~V~VlE 290 (662)
T PRK01747 271 AGAALALALARRGWQVTLYE 290 (662)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999995
No 193
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=31.89 E-value=30 Score=25.67 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=17.1
Q ss_pred CchHHHHHhh----cCceeEEee
Q 043447 9 GSPRRSALKK----AVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~----~g~~v~vf~ 27 (65)
|++.|..|.+ .|++|+|+.
T Consensus 12 Gl~~A~~La~~~~~~G~~v~viE 34 (437)
T TIGR01989 12 GLALAAALGNNPLTKDLKVLLLD 34 (437)
T ss_pred HHHHHHHHhcCcccCCCeEEEEe
Confidence 7899999998 899999994
No 194
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=31.45 E-value=33 Score=24.83 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=18.1
Q ss_pred CCchHHHHHhhc--CceeEEee
Q 043447 8 YGSPRRSALKKA--VTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~--g~~v~vf~ 27 (65)
-|++.|..|.+. |++|+|+.
T Consensus 13 ~G~s~A~~La~~~~g~~V~llE 34 (393)
T PRK11728 13 VGLSTAMQLQERYPGARIAVLE 34 (393)
T ss_pred HHHHHHHHHHHhCCCCeEEEEe
Confidence 478999999998 99999995
No 195
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.32 E-value=38 Score=22.65 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=21.3
Q ss_pred e-ecccCCCCcccccccceeeecChh
Q 043447 27 L-GRMIGSQPLIFDHAAQFFMPNDSR 51 (65)
Q Consensus 27 ~-GRma~~~~~~fDHGAQYFTar~~~ 51 (65)
+ |.+.+.+...+|.|+-||.=++.+
T Consensus 61 V~gki~d~~kVlVdIGTGy~VEK~~e 86 (130)
T PRK01203 61 ADGNIKKDKDLIVPIGSGVYIAEERE 86 (130)
T ss_pred EeEEecCCCeEEEEcCCCeEEEecHH
Confidence 6 888899999999999999876544
No 196
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=31.29 E-value=30 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=17.9
Q ss_pred CCCCchHHHHHhhcCceeE---Ee
Q 043447 6 SSYGSPRRSALKKAVTRVE---LW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~---vf 26 (65)
..-|+.|.+.|++.|++|. ||
T Consensus 89 T~~Gl~A~~~L~~~GI~vn~T~vf 112 (220)
T PRK12653 89 TAEGLAAIKMLKAEGIPTLGTAVY 112 (220)
T ss_pred CHHHHHHHHHHHHcCCCeeEEEec
Confidence 3458899999999999998 66
No 197
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.06 E-value=25 Score=24.70 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=18.3
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+..|.+-|..|.++|++|++|
T Consensus 10 G~mG~~iA~~la~~G~~V~~~ 30 (288)
T PRK09260 10 GVMGRGIAYVFAVSGFQTTLV 30 (288)
T ss_pred cHHHHHHHHHHHhCCCcEEEE
Confidence 345788899999999999999
No 198
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=31.05 E-value=34 Score=24.36 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=16.9
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+++|..|.+.|++|.|.
T Consensus 11 Gl~~A~~la~~g~~v~li 28 (388)
T TIGR01790 11 GLAIALELARPGLRVQLI 28 (388)
T ss_pred HHHHHHHHHhCCCeEEEE
Confidence 788999999999999999
No 199
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=31.05 E-value=36 Score=23.72 Aligned_cols=43 Identities=12% Similarity=0.384 Sum_probs=30.9
Q ss_pred hhcCceeEEe------e-ecccCCCCcccccccceeeecChh-----HHHHHHHH
Q 043447 17 KKAVTRVELW------L-GRMIGSQPLIFDHAAQFFMPNDSR-----FRKLVDCW 59 (65)
Q Consensus 17 ~~~g~~v~vf------~-GRma~~~~~~fDHGAQYFTar~~~-----F~~~v~~w 59 (65)
...|+.+-|= + |++.+..-.-+|.|+=||.=.+.+ |++-|+-+
T Consensus 59 ~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l 113 (153)
T KOG3048|consen 59 ANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYL 113 (153)
T ss_pred CCCCCeEEEecccceeccceeccccceeEeccCceEEeechHHHHHHHHHHHHHH
Confidence 3456666553 6 999998888999999999865543 55555543
No 200
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=31.04 E-value=32 Score=27.08 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+.+|-.|.+.|++|+|+
T Consensus 13 AGleAAlaLAr~Gl~V~Li 31 (436)
T PRK05335 13 AGSEAAWQLAKRGVPVELY 31 (436)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 4789999999999999999
No 201
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.59 E-value=38 Score=25.18 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=18.2
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.-|.|.|+.|++.|+.|+++.
T Consensus 16 ~sG~s~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 16 KTGLSVVRFLARQGIPFAVMD 36 (448)
T ss_pred HhHHHHHHHHHhCCCeEEEEe
Confidence 347789999999999999984
No 202
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=30.40 E-value=36 Score=25.34 Aligned_cols=20 Identities=5% Similarity=-0.185 Sum_probs=18.0
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|.++|..|.+.|++|.|+.
T Consensus 11 aG~~aA~~aa~~g~~v~lie 30 (463)
T TIGR02053 11 AAFAAAIKAAELGASVAMVE 30 (463)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999993
No 203
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=30.33 E-value=33 Score=25.39 Aligned_cols=19 Identities=16% Similarity=-0.038 Sum_probs=17.8
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+.+|..|++.|++|+|+
T Consensus 8 aGl~aAi~aa~~G~~V~ll 26 (400)
T TIGR00275 8 AGLMAAITAAREGLSVLLL 26 (400)
T ss_pred HHHHHHHHHHhcCCcEEEE
Confidence 4889999999999999999
No 204
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.22 E-value=41 Score=22.98 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=14.7
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-|+.|.+.||+|+|+.
T Consensus 20 ~la~~L~~~G~~v~v~~ 36 (371)
T cd04962 20 ELGKALARRGHEVHFIT 36 (371)
T ss_pred HHHHHHHhcCCceEEEe
Confidence 45889999999999994
No 205
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=30.14 E-value=55 Score=19.82 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.0
Q ss_pred ceeee-cChhHHHHHHHHHH
Q 043447 43 QFFMP-NDSRFRKLVDCWLE 61 (65)
Q Consensus 43 QYFTa-r~~~F~~~v~~w~~ 61 (65)
=||++ +-.+|..+|+++..
T Consensus 58 fyy~a~~rvDFR~Lvr~L~~ 77 (88)
T PF04468_consen 58 FYYTAESRVDFRELVRDLAR 77 (88)
T ss_pred EEEEeCCcCcHHHHHHHHHH
Confidence 37777 46789999999865
No 206
>PLN02463 lycopene beta cyclase
Probab=30.05 E-value=35 Score=26.17 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=17.4
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|+++|..|.+.|++|.|+
T Consensus 39 AGLalA~~La~~Gl~V~li 57 (447)
T PLN02463 39 AGLAVAQQVSEAGLSVCCI 57 (447)
T ss_pred HHHHHHHHHHHCCCeEEEe
Confidence 3789999999999999999
No 207
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=29.50 E-value=34 Score=24.32 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.8
Q ss_pred CCCCchHHHHHhhcCceeE---Ee
Q 043447 6 SSYGSPRRSALKKAVTRVE---LW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~---vf 26 (65)
..-|+.|.+.|++.|++|. ||
T Consensus 89 T~~Gl~Ai~~L~~~GI~vn~T~vf 112 (220)
T PRK12655 89 TAEGLAAIKKLKKEGIPTLGTAVY 112 (220)
T ss_pred CHHHHHHHHHHHHCCCceeEeEec
Confidence 3468899999999999998 66
No 208
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=29.37 E-value=37 Score=25.44 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=19.1
Q ss_pred CCchHHHHHhhc--CceeEEee-ecc
Q 043447 8 YGSPRRSALKKA--VTRVELWL-GRM 30 (65)
Q Consensus 8 ~~~~~A~~L~~~--g~~v~vf~-GRm 30 (65)
-|+|.|-.|++. |.+|+|.. ++.
T Consensus 35 ~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 35 TGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 388999999998 99999995 443
No 209
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=29.30 E-value=42 Score=26.85 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=16.6
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
--|+|||-.|...- +||||.
T Consensus 18 isGLSAA~~Ls~rh-dVTLfE 37 (447)
T COG2907 18 ISGLSAAWLLSRRH-DVTLFE 37 (447)
T ss_pred chhhhhHHhhhccc-ceEEEe
Confidence 45899999998775 999993
No 210
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.26 E-value=38 Score=25.51 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=18.3
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|.+||..+.+.|++|+|+
T Consensus 13 paG~~AA~~aa~~G~~V~li 32 (466)
T PRK06115 13 PGGYNAAIRAGQLGLKVACV 32 (466)
T ss_pred HHHHHHHHHHHhCCCeEEEE
Confidence 34889999999999999999
No 211
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.24 E-value=39 Score=24.86 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=17.3
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|.++|+.|.+.|.+|.+.
T Consensus 16 ~G~s~a~~l~~~G~~V~~~ 34 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVN 34 (447)
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 4789999999999999988
No 212
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.19 E-value=45 Score=18.82 Aligned_cols=19 Identities=26% Similarity=0.136 Sum_probs=15.9
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|.-.|..|++.|.+|+|+.
T Consensus 11 g~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIE 29 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhCcEEEEEe
Confidence 4557899999999999984
No 213
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.14 E-value=45 Score=25.00 Aligned_cols=21 Identities=14% Similarity=-0.097 Sum_probs=18.2
Q ss_pred CCCch-HHHHHhhcCceeEEee
Q 043447 7 SYGSP-RRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~-~A~~L~~~g~~v~vf~ 27 (65)
.-|.| .|+.|++.|+.|+++.
T Consensus 17 ~sG~s~~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 17 GIGMSGLAEVLLNLGYKVSGSD 38 (461)
T ss_pred hhhHHHHHHHHHhCCCeEEEEC
Confidence 45888 5999999999999984
No 214
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=29.04 E-value=47 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=18.9
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|++-|-.|.++||+|..+
T Consensus 9 GyvGl~~A~~lA~~G~~V~g~ 29 (185)
T PF03721_consen 9 GYVGLPLAAALAEKGHQVIGV 29 (185)
T ss_dssp STTHHHHHHHHHHTTSEEEEE
T ss_pred CcchHHHHHHHHhCCCEEEEE
Confidence 346899999999999999999
No 215
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=28.60 E-value=50 Score=23.61 Aligned_cols=16 Identities=19% Similarity=0.030 Sum_probs=14.1
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
-|++|.+.||+|+|+.
T Consensus 16 la~~L~~~G~~v~~~~ 31 (396)
T cd03818 16 LAPALAAQGHEVVFLT 31 (396)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 4789999999999993
No 216
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=28.60 E-value=36 Score=28.62 Aligned_cols=20 Identities=30% Similarity=0.091 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|++||..|.++|++|+|+.
T Consensus 174 AGLaAA~~aar~G~~V~liD 193 (985)
T TIGR01372 174 AGLAAALAAARAGARVILVD 193 (985)
T ss_pred HHHHHHHHHHhCCCcEEEEe
Confidence 47999999999999999993
No 217
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=28.53 E-value=54 Score=20.06 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=13.9
Q ss_pred chHHHHHhhcCceeEEe
Q 043447 10 SPRRSALKKAVTRVELW 26 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf 26 (65)
..-++.|++.|++|+|+
T Consensus 20 ~~l~~~L~~~g~~v~v~ 36 (229)
T cd01635 20 LDLAKALARRGHEVEVV 36 (229)
T ss_pred HHHHHHHHHcCCeEEEE
Confidence 34578889999999987
No 218
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=28.42 E-value=55 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.4
Q ss_pred chHHHHHhhcCceeEEee
Q 043447 10 SPRRSALKKAVTRVELWL 27 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf~ 27 (65)
.++++.|++.|.+|.|+-
T Consensus 113 ~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 113 VPLVERLRELGKRVIVVG 130 (149)
T ss_pred HHHHHHHHHcCCEEEEEc
Confidence 467899999999999983
No 219
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=28.36 E-value=29 Score=17.41 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=17.9
Q ss_pred cceeeecChhHHHHHHHHHHCCCC
Q 043447 42 AQFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 42 AQYFTar~~~F~~~v~~w~~~G~v 65 (65)
++.|.+..+.+...++.|.+.|+|
T Consensus 21 ~~~l~~s~~tv~~~l~~L~~~g~i 44 (53)
T smart00420 21 AELLGVSEMTIRRDLNKLEEQGLL 44 (53)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCE
Confidence 344566777788889999888864
No 220
>PRK14694 putative mercuric reductase; Provisional
Probab=28.34 E-value=39 Score=25.36 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|.++|..|.+.|.+|.|+-
T Consensus 17 aG~~aA~~l~~~g~~v~lie 36 (468)
T PRK14694 17 SAMAAALKATERGARVTLIE 36 (468)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 48899999999999999994
No 221
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.27 E-value=39 Score=25.55 Aligned_cols=20 Identities=5% Similarity=-0.280 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|..+|.+|.+.|++|+|+.
T Consensus 15 aG~~aA~~aa~~G~~V~lie 34 (471)
T PRK06467 15 AGYSAAFRAADLGLETVCVE 34 (471)
T ss_pred HHHHHHHHHHHCCCcEEEEe
Confidence 47899999999999999993
No 222
>PRK14011 prefoldin subunit alpha; Provisional
Probab=28.14 E-value=46 Score=22.34 Aligned_cols=25 Identities=12% Similarity=0.474 Sum_probs=21.0
Q ss_pred ee-ecccCCCCcccccccceeeecCh
Q 043447 26 WL-GRMIGSQPLIFDHAAQFFMPNDS 50 (65)
Q Consensus 26 f~-GRma~~~~~~fDHGAQYFTar~~ 50 (65)
|+ |.+.+.+...+|.|+-||.=++.
T Consensus 61 yV~g~i~d~dkVlVdIGtGy~VEk~~ 86 (144)
T PRK14011 61 FLKAKIVDPDKAILGVGSDIYLEKDV 86 (144)
T ss_pred EEeEEecCCCeEEEEccCCeEEEecH
Confidence 36 88889899899999999987654
No 223
>PLN02327 CTP synthase
Probab=28.03 E-value=56 Score=26.68 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=26.4
Q ss_pred chHHHHHhhcCceeEEe-------e--ecccCCCCcccccccceeeecChh
Q 043447 10 SPRRSALKKAVTRVELW-------L--GRMIGSQPLIFDHAAQFFMPNDSR 51 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf-------~--GRma~~~~~~fDHGAQYFTar~~~ 51 (65)
+|-...||+.|+.|+.. + |-|+ ++.||=-|.|-.+.|
T Consensus 21 aSig~ll~~~g~~V~~~K~DPYlNvD~Gtms-----P~eHGEVfVt~DG~E 66 (557)
T PLN02327 21 SSIGVLLKACGLRVTSIKIDPYLNTDAGTMS-----PFEHGEVFVLDDGGE 66 (557)
T ss_pred HHHHHHHHHCCCceeeeecccccccCCCCCC-----CcccceEEEccCCcc
Confidence 56678899999999998 2 7777 255666666655433
No 224
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=27.95 E-value=45 Score=25.76 Aligned_cols=18 Identities=28% Similarity=0.084 Sum_probs=16.3
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|..-|..|.++||.|+||
T Consensus 32 GspMArnLlkAGheV~V~ 49 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLA 49 (341)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 567799999999999999
No 225
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=27.93 E-value=43 Score=22.53 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=14.7
Q ss_pred ecChhHHHHHHHHHHCC
Q 043447 47 PNDSRFRKLVDCWLERG 63 (65)
Q Consensus 47 ar~~~F~~~v~~w~~~G 63 (65)
.++++|+++++.|...|
T Consensus 78 ~sS~~fA~~l~~~~~~g 94 (153)
T TIGR00246 78 WTTPQLADTLEKWKTDG 94 (153)
T ss_pred CCHHHHHHHHHHHhccC
Confidence 47899999999998775
No 226
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.76 E-value=40 Score=21.10 Aligned_cols=22 Identities=9% Similarity=0.440 Sum_probs=17.7
Q ss_pred ecccCCCCcccccccceeeecC
Q 043447 28 GRMIGSQPLIFDHAAQFFMPND 49 (65)
Q Consensus 28 GRma~~~~~~fDHGAQYFTar~ 49 (65)
|...+++.-.+++|+-||.-.+
T Consensus 63 ~~i~~~~~v~v~iG~g~~vE~~ 84 (129)
T cd00584 63 AKVKDTDKVLVDLGTGYYVEKD 84 (129)
T ss_pred EEeCCCCEEEEEcCCCEEEEec
Confidence 6666777888999999998654
No 227
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.76 E-value=43 Score=24.88 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=18.2
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.-|.++|+.|.+.|+.|+++-
T Consensus 15 ~~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 15 GTGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 347889999999999999984
No 228
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=27.64 E-value=39 Score=27.54 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=16.8
Q ss_pred CchHHHHHhhc--CceeEEe
Q 043447 9 GSPRRSALKKA--VTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~--g~~v~vf 26 (65)
|+.+|..|++. |++|+|+
T Consensus 12 GLaaAi~L~~~~~G~~V~vl 31 (765)
T PRK08255 12 GLYFALLMKLLDPAHEVTVV 31 (765)
T ss_pred HHHHHHHHHHhCCCCeEEEE
Confidence 78999999998 8999999
No 229
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.54 E-value=43 Score=25.20 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=17.6
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|.+.|+.|++.|+.|+++.
T Consensus 25 sG~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 25 SNIPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred HHHHHHHHHHHCCCEEEEEC
Confidence 36689999999999999985
No 230
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.33 E-value=49 Score=24.70 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.5
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|.|+|+.|++.|+.|+++.
T Consensus 20 ~G~~~a~~l~~~G~~v~~~D 39 (460)
T PRK01390 20 SGLATARALVAGGAEVIAWD 39 (460)
T ss_pred hHHHHHHHHHHCCCEEEEEC
Confidence 37789999999999999984
No 231
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=27.27 E-value=47 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=14.5
Q ss_pred ecChhHHHHHHHHHHCCC
Q 043447 47 PNDSRFRKLVDCWLERGL 64 (65)
Q Consensus 47 ar~~~F~~~v~~w~~~G~ 64 (65)
.++++|+++++.|...|.
T Consensus 80 ~sS~~fA~~l~~~~~~g~ 97 (155)
T PF02590_consen 80 LSSEEFAKKLERWMNQGK 97 (155)
T ss_dssp --HHHHHHHHHHHHHTTS
T ss_pred CChHHHHHHHHHHHhcCC
Confidence 468999999999998874
No 232
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=27.27 E-value=37 Score=19.62 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=18.3
Q ss_pred cccceeeecChhHHHHHHHHHHCCCC
Q 043447 40 HAAQFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 40 HGAQYFTar~~~F~~~v~~w~~~G~v 65 (65)
.+..++..+.++.+++++.+.++|.+
T Consensus 26 ~~~~~~~~s~~eL~~fL~~lv~e~~L 51 (60)
T PF08672_consen 26 KDPGGYDISLEELQEFLDRLVEEGKL 51 (60)
T ss_dssp GGG--TT--HHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCcE
Confidence 35577888999999999999998853
No 233
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=27.26 E-value=41 Score=20.84 Aligned_cols=13 Identities=15% Similarity=0.475 Sum_probs=11.9
Q ss_pred eeecChhHHHHHH
Q 043447 45 FMPNDSRFRKLVD 57 (65)
Q Consensus 45 FTar~~~F~~~v~ 57 (65)
||..|++|++.++
T Consensus 11 fTe~D~ey~~~~~ 23 (81)
T PF15320_consen 11 FTEDDEEYMEYCK 23 (81)
T ss_pred ccccCHHHHHHHh
Confidence 8999999999986
No 234
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=26.92 E-value=50 Score=22.21 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.5
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-++.|++.||.|+|+.
T Consensus 21 ~l~~~l~~~G~~v~v~~ 37 (365)
T cd03825 21 RLHRALQAAGVDSTMLV 37 (365)
T ss_pred HHHHHHHhcCCceeEEE
Confidence 45788999999999994
No 235
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=26.65 E-value=28 Score=17.97 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=9.7
Q ss_pred HHHhhcCceeEEe
Q 043447 14 SALKKAVTRVELW 26 (65)
Q Consensus 14 ~~L~~~g~~v~vf 26 (65)
+.|++.|..|++|
T Consensus 3 ~~LR~lgePi~lF 15 (30)
T PF08799_consen 3 RRLRELGEPITLF 15 (30)
T ss_dssp HHHHHCT--SCET
T ss_pred HHHHhcCCChhhh
Confidence 5799999999998
No 236
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=26.59 E-value=54 Score=23.50 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=14.0
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
-|..|.+.||+|+|+.
T Consensus 23 la~~L~~~G~~V~v~~ 38 (398)
T cd03796 23 LSQCLIKRGHKVVVIT 38 (398)
T ss_pred HHHHHHHcCCeeEEEe
Confidence 4778999999999995
No 237
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=26.55 E-value=69 Score=18.15 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.6
Q ss_pred cChhHHHHHHHHHHCCC
Q 043447 48 NDSRFRKLVDCWLERGL 64 (65)
Q Consensus 48 r~~~F~~~v~~w~~~G~ 64 (65)
+++-|...+++|++.+.
T Consensus 7 ~h~~~g~~I~~w~~~r~ 23 (71)
T PF04304_consen 7 NHRLFGPYIRNWEEHRG 23 (71)
T ss_pred cCchhHHHHHHHHHCCC
Confidence 67889999999998764
No 238
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.38 E-value=47 Score=24.47 Aligned_cols=19 Identities=32% Similarity=0.148 Sum_probs=17.4
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|...|..|.+.|++|+++
T Consensus 16 ~G~~~A~~l~~~G~~V~~~ 34 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILT 34 (450)
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 5778999999999999998
No 239
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=26.32 E-value=53 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.4
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-+..|.+.||+|+|+.
T Consensus 29 ~l~~~L~~~g~~V~v~~ 45 (398)
T cd03800 29 ELARALARLGHEVDIFT 45 (398)
T ss_pred HHHHHHhccCceEEEEE
Confidence 34688999999999994
No 240
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=26.10 E-value=37 Score=26.51 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=17.9
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|.+-|..|.++||+|+||
T Consensus 11 ~MG~~lA~nL~~~G~~V~v~ 30 (470)
T PTZ00142 11 VMGQNLALNIASRGFKISVY 30 (470)
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 45778899999999999999
No 241
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=26.10 E-value=25 Score=19.00 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=15.9
Q ss_pred ceeeecChhHHHHHHHHHHCCCC
Q 043447 43 QFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 43 QYFTar~~~F~~~v~~w~~~G~v 65 (65)
.++....+.....|+.+.+.|+|
T Consensus 26 ~~~~~~~~~vs~~i~~L~~~glv 48 (68)
T PF13463_consen 26 ERLGISKSTVSRIIKKLEEKGLV 48 (68)
T ss_dssp HHTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHCcCHHHHHHHHHHHHHCCCE
Confidence 34445566778899999999875
No 242
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.85 E-value=56 Score=17.87 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=11.8
Q ss_pred hHHHHHhhcCceeEE
Q 043447 11 PRRSALKKAVTRVEL 25 (65)
Q Consensus 11 ~~A~~L~~~g~~v~v 25 (65)
.+.+.|+++|+.|.+
T Consensus 52 ~~~~~L~~~G~~v~~ 66 (66)
T cd04908 52 KAKEALKEAGFAVKL 66 (66)
T ss_pred HHHHHHHHCCCEEEC
Confidence 567889999988753
No 243
>PRK07846 mycothione reductase; Reviewed
Probab=25.65 E-value=1.3e+02 Score=22.73 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=24.5
Q ss_pred CchHHHHHhhcCceeEEeeecccCCCCcccccccceeeecChhHHHHHHHHHHCC
Q 043447 9 GSPRRSALKKAVTRVELWLGRMIGSQPLIFDHAAQFFMPNDSRFRKLVDCWLERG 63 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~GRma~~~~~~fDHGAQYFTar~~~F~~~v~~w~~~G 63 (65)
|...|..|.+.|.+|+++. .+.+.+..-++++...+.++.+.|
T Consensus 178 G~E~A~~l~~~G~~Vtli~------------~~~~ll~~~d~~~~~~l~~l~~~~ 220 (451)
T PRK07846 178 AAEFAHVFSALGVRVTVVN------------RSGRLLRHLDDDISERFTELASKR 220 (451)
T ss_pred HHHHHHHHHHcCCeEEEEE------------cCCccccccCHHHHHHHHHHHhcC
Confidence 4556777888888887764 111122223566666666655544
No 244
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=25.43 E-value=26 Score=19.46 Aligned_cols=23 Identities=4% Similarity=0.264 Sum_probs=17.0
Q ss_pred ceeeecChhHHHHHHHHHHCCCC
Q 043447 43 QFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 43 QYFTar~~~F~~~v~~w~~~G~v 65 (65)
.+.-++-+.+.+.++.|.++|++
T Consensus 36 ~~~g~sr~tv~r~l~~l~~~g~I 58 (76)
T PF13545_consen 36 DMLGVSRETVSRILKRLKDEGII 58 (76)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHCCCHHHHHHHHHHHHHCCCE
Confidence 34445566788899999999875
No 245
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=25.25 E-value=46 Score=24.30 Aligned_cols=18 Identities=11% Similarity=0.229 Sum_probs=14.7
Q ss_pred CchHHHHHhhcCce--eEEe
Q 043447 9 GSPRRSALKKAVTR--VELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~--v~vf 26 (65)
|+++|.+|++.|+. |+|+
T Consensus 15 G~~aA~~Lr~~~~~~~I~li 34 (396)
T PRK09754 15 AAMAAASLRQQGFTGELHLF 34 (396)
T ss_pred HHHHHHHHHhhCCCCCEEEe
Confidence 78999999999984 5555
No 246
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.24 E-value=66 Score=21.26 Aligned_cols=17 Identities=12% Similarity=-0.072 Sum_probs=14.5
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-++.|.+.||+|+|+.
T Consensus 22 ~l~~~L~~~g~~v~~~~ 38 (364)
T cd03814 22 RLVEHLRARGHEVLVIA 38 (364)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 45778999999999995
No 247
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=25.21 E-value=56 Score=24.04 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=15.3
Q ss_pred chHHHHHhhcCceeEEee
Q 043447 10 SPRRSALKKAVTRVELWL 27 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf~ 27 (65)
..=|++|.++||.||++.
T Consensus 23 ~~la~~L~~~gh~vt~~~ 40 (496)
T KOG1192|consen 23 LQLAKRLAERGHNVTVVT 40 (496)
T ss_pred HHHHHHHHHcCCceEEEE
Confidence 345899999999999994
No 248
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.96 E-value=40 Score=23.65 Aligned_cols=21 Identities=19% Similarity=-0.043 Sum_probs=18.5
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+..|.+-|..|..+|++|++|
T Consensus 13 G~mG~~iA~~la~~G~~V~l~ 33 (292)
T PRK07530 13 GQMGNGIAHVCALAGYDVLLN 33 (292)
T ss_pred cHHHHHHHHHHHHCCCeEEEE
Confidence 456788899999999999999
No 249
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=24.71 E-value=56 Score=20.17 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=15.9
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|.--|..|+++|++|+++.
T Consensus 10 G~~~a~~L~~~g~~V~l~~ 28 (151)
T PF02558_consen 10 GSLYAARLAQAGHDVTLVS 28 (151)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEE
Confidence 4556889999999999994
No 250
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=24.68 E-value=67 Score=21.50 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.7
Q ss_pred hHHHHHhhcCceeEEe
Q 043447 11 PRRSALKKAVTRVELW 26 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf 26 (65)
.-++.|.+.|++|+|+
T Consensus 19 ~~~~~L~~~g~~v~v~ 34 (355)
T cd03799 19 REILALEAAGHEVEIF 34 (355)
T ss_pred HHHHHHHhCCCeEEEE
Confidence 3467899999999999
No 251
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.64 E-value=53 Score=24.36 Aligned_cols=19 Identities=16% Similarity=-0.120 Sum_probs=16.7
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|.|.|..|++.|+.|+++
T Consensus 14 ~G~slA~~l~~~G~~V~g~ 32 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGV 32 (418)
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 3678999999999988887
No 252
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.53 E-value=44 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=18.0
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+..|..-|..|.++||+|++|
T Consensus 13 G~mG~~ia~~L~~~G~~V~~~ 33 (328)
T PRK14618 13 GAWGTALAVLAASKGVPVRLW 33 (328)
T ss_pred CHHHHHHHHHHHHCCCeEEEE
Confidence 345777899999999999999
No 253
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=24.50 E-value=49 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=16.6
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+.||.++.++|.+|.|..
T Consensus 11 Gl~AA~~Aae~G~~V~lve 29 (417)
T PF00890_consen 11 GLAAAIEAAEAGAKVLLVE 29 (417)
T ss_dssp HHHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHHhhhcCeEEEEE
Confidence 7899999999999999994
No 254
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.35 E-value=83 Score=19.24 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=15.0
Q ss_pred chHHHHHhhcCceeEEe
Q 043447 10 SPRRSALKKAVTRVELW 26 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf 26 (65)
.-|++.|++.|+.++|+
T Consensus 25 l~A~~~L~~~Gi~~~vi 41 (124)
T PF02780_consen 25 LEAAEELEEEGIKAGVI 41 (124)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCceeEE
Confidence 35889999999999998
No 255
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=24.21 E-value=69 Score=20.99 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=14.0
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
-++.|++.|++|+|+.
T Consensus 23 l~~~L~~~g~~v~~~~ 38 (394)
T cd03794 23 LAEELVKRGHEVTVIT 38 (394)
T ss_pred HHHHHHhCCceEEEEe
Confidence 4788999999999994
No 256
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=24.21 E-value=52 Score=24.62 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
=|.++|..|.+.|.+|+|+-
T Consensus 11 aG~~aA~~~~~~g~~V~lie 30 (458)
T PRK06912 11 AGYVAAITAAQNGKNVTLID 30 (458)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 47899999999999999994
No 257
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=23.96 E-value=41 Score=17.31 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=19.2
Q ss_pred cceeeecChhHHHHHHHHHHCCCC
Q 043447 42 AQFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 42 AQYFTar~~~F~~~v~~w~~~G~v 65 (65)
|+.|-++-+.-.+.++.|.+.|++
T Consensus 27 a~~~~vs~~tv~~~l~~L~~~g~i 50 (60)
T smart00345 27 AAQLGVSRTTVREALSRLEAEGLV 50 (60)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCE
Confidence 566677778888899999998875
No 258
>PRK04148 hypothetical protein; Provisional
Probab=23.91 E-value=83 Score=20.88 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=17.3
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
+|.+-|..|.+.|++|+..
T Consensus 27 fG~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 27 FYFKVAKKLKESGFDVIVI 45 (134)
T ss_pred CCHHHHHHHHHCCCEEEEE
Confidence 6778899999999999998
No 259
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.90 E-value=46 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=17.6
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|..-|..|.++|++|+++
T Consensus 9 G~~G~~~a~~L~~~g~~V~~~ 29 (304)
T PRK06522 9 GAIGGLFGAALAQAGHDVTLV 29 (304)
T ss_pred CHHHHHHHHHHHhCCCeEEEE
Confidence 345677889999999999998
No 260
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=23.88 E-value=62 Score=21.81 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=14.8
Q ss_pred ecChhHHHHHHHHHHCC
Q 043447 47 PNDSRFRKLVDCWLERG 63 (65)
Q Consensus 47 ar~~~F~~~v~~w~~~G 63 (65)
.++++|+++++.|...|
T Consensus 80 ~sS~~fA~~l~~~~~~g 96 (157)
T PRK00103 80 LSSEEFAQELERWRDDG 96 (157)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 46899999999998876
No 261
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=23.85 E-value=64 Score=19.37 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.7
Q ss_pred CCCCchHHHHHhhcCcee
Q 043447 6 SSYGSPRRSALKKAVTRV 23 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v 23 (65)
++-|..+...|+++|+.|
T Consensus 72 ~~iG~~a~~~L~~~GI~v 89 (106)
T cd00852 72 AKIGDEPKEKLEEAGIEV 89 (106)
T ss_pred hhhCccHHHHHHHCCCEE
Confidence 356888999999999666
No 262
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=23.83 E-value=55 Score=24.30 Aligned_cols=19 Identities=21% Similarity=-0.038 Sum_probs=17.5
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|+++|-+|.+.|..|.|+.
T Consensus 16 Gl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 16 ALCAALAAREAGASVLLLE 34 (466)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999984
No 263
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=23.78 E-value=67 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=17.4
Q ss_pred hHHHHHhhcCceeEEee---eccc
Q 043447 11 PRRSALKKAVTRVELWL---GRMI 31 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~---GRma 31 (65)
.-|+...+.|.+|+||+ |+++
T Consensus 22 iias~A~A~G~EV~VF~TfwGL~~ 45 (137)
T COG2210 22 IIASGAAAMGYEVTVFFTFWGLMA 45 (137)
T ss_pred HHHHHHHHcCCeEEEEEeHHHHHH
Confidence 34677888999999994 8888
No 264
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=23.74 E-value=57 Score=24.13 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=18.1
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+++|..|.+.|++|.|+.
T Consensus 14 aGl~aA~~l~~~g~~v~lie 33 (460)
T PRK06292 14 AGYVAARRAAKLGKKVALIE 33 (460)
T ss_pred HHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999994
No 265
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.70 E-value=44 Score=23.50 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=18.3
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|.+-|..|..+|++|++|
T Consensus 12 G~mG~~iA~~la~~G~~V~l~ 32 (287)
T PRK08293 12 GVLGSQIAFQTAFHGFDVTIY 32 (287)
T ss_pred CHHHHHHHHHHHhcCCeEEEE
Confidence 345788899999999999999
No 266
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=23.41 E-value=63 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=17.7
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|.+.|+.|++.|+.|++..
T Consensus 10 ~G~a~a~~l~~~G~~V~~sD 29 (433)
T TIGR01087 10 TGRAVARFLHKKGAEVTVTD 29 (433)
T ss_pred hHHHHHHHHHHCCCEEEEEe
Confidence 46789999999999999985
No 267
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=23.31 E-value=57 Score=24.56 Aligned_cols=21 Identities=10% Similarity=-0.099 Sum_probs=18.6
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.-|..+|..|.+.|++|+|+-
T Consensus 11 ~~G~~~a~~~~~~g~~v~~~e 31 (466)
T PRK07845 11 PGGYEAALVAAQLGADVTVIE 31 (466)
T ss_pred HHHHHHHHHHHhCCCeEEEEE
Confidence 347899999999999999994
No 268
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=23.28 E-value=76 Score=23.23 Aligned_cols=16 Identities=25% Similarity=0.111 Sum_probs=14.4
Q ss_pred hHHHHHhhcCceeEEe
Q 043447 11 PRRSALKKAVTRVELW 26 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf 26 (65)
+-+++|.+.||+|+|+
T Consensus 24 ~L~~aL~~~G~~V~Vi 39 (476)
T cd03791 24 ALPKALAKLGHDVRVI 39 (476)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 4578999999999999
No 269
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=23.28 E-value=1.5e+02 Score=22.85 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=32.2
Q ss_pred CCchHHHHHhhcCceeEEe-----e-ecccCC----------------------CCcccccccceeeecChhHH
Q 043447 8 YGSPRRSALKKAVTRVELW-----L-GRMIGS----------------------QPLIFDHAAQFFMPNDSRFR 53 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf-----~-GRma~~----------------------~~~~fDHGAQYFTar~~~F~ 53 (65)
-|+.+|..|..+|..|.+. . ||.+.- ....+|..-+++-++++-..
T Consensus 15 ~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G~lv~ 88 (443)
T PTZ00363 15 KECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASGELVK 88 (443)
T ss_pred HHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCChHHH
Confidence 3678899999999999999 5 666611 22346777777766765543
No 270
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=23.00 E-value=53 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.5
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|..-|..|.++|++|+++
T Consensus 9 G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 9 GAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CHHHHHHHHHHHHCCCceEEE
Confidence 345777889999999999998
No 271
>COG1825 RplY Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis]
Probab=22.84 E-value=50 Score=20.64 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.9
Q ss_pred CCCCCCCchHHHHHhhcC
Q 043447 3 RRRSSYGSPRRSALKKAV 20 (65)
Q Consensus 3 ~~~~~~~~~~A~~L~~~g 20 (65)
-.|.+.|-+++++|+.+|
T Consensus 7 ~~R~~~Gkg~~RrlR~~G 24 (93)
T COG1825 7 EVRTSQGKGASRRLRRAG 24 (93)
T ss_pred eEecccCcchhHhHHhcC
Confidence 357889999999999999
No 272
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=22.75 E-value=67 Score=24.01 Aligned_cols=20 Identities=15% Similarity=-0.137 Sum_probs=17.3
Q ss_pred CCch-HHHHHhhcCceeEEee
Q 043447 8 YGSP-RRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~-~A~~L~~~g~~v~vf~ 27 (65)
-|.| .|+.|++.|++|+++.
T Consensus 10 sGm~~la~~L~~~G~~v~~~D 30 (448)
T TIGR01082 10 IGMSGIAEILLNRGYQVSGSD 30 (448)
T ss_pred HHHHHHHHHHHHCCCeEEEEC
Confidence 3666 8999999999999984
No 273
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=22.69 E-value=76 Score=21.19 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.2
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-++.|.+.||+|+|+.
T Consensus 27 ~l~~~L~~~g~~V~v~~ 43 (335)
T cd03802 27 ALTEGLVARGHEVTLFA 43 (335)
T ss_pred HHHHHHHhcCceEEEEe
Confidence 34688999999999994
No 274
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.67 E-value=71 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=14.1
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
-|+.|.+.||+|+|+.
T Consensus 24 la~~L~~~g~~v~v~~ 39 (363)
T cd04955 24 LAPRLVARGHEVTVYC 39 (363)
T ss_pred HHHHHHhcCCCEEEEE
Confidence 4788999999999994
No 275
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.62 E-value=90 Score=18.48 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.7
Q ss_pred hHHHHHhhcCceeEEe
Q 043447 11 PRRSALKKAVTRVELW 26 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf 26 (65)
.-|..|+++|++|..+
T Consensus 19 ~la~~l~~~G~~v~~~ 34 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDIL 34 (121)
T ss_dssp HHHHHHHHTTBEEEEE
T ss_pred HHHHHHHHCCCeEEEE
Confidence 4578899999999977
No 276
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=22.58 E-value=61 Score=24.18 Aligned_cols=19 Identities=26% Similarity=0.076 Sum_probs=16.2
Q ss_pred CchHHHHHhhcCceeEEee
Q 043447 9 GSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~ 27 (65)
|..-|..|.++||+|++|.
T Consensus 32 G~~MA~~La~aG~~V~v~D 50 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAE 50 (342)
T ss_pred HHHHHHHHHhCCCeEEEEE
Confidence 4567889999999999993
No 277
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=22.49 E-value=46 Score=17.43 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=17.6
Q ss_pred ceeeecChhHHHHHHHHHHCCCC
Q 043447 43 QFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 43 QYFTar~~~F~~~v~~w~~~G~v 65 (65)
..|-++-+.....+..|.+.|+|
T Consensus 33 ~~~~is~~~v~~~l~~L~~~G~i 55 (66)
T cd07377 33 EELGVSRTTVREALRELEAEGLV 55 (66)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCE
Confidence 34556677788899999999875
No 278
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=22.37 E-value=73 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.164 Sum_probs=13.6
Q ss_pred HHHHHhhcCceeEEe
Q 043447 12 RRSALKKAVTRVELW 26 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf 26 (65)
-++.|.+.|++|+|+
T Consensus 24 l~~~L~~~g~~v~v~ 38 (359)
T cd03823 24 LAEALAKRGHEVAVL 38 (359)
T ss_pred HHHHHHhcCCceEEE
Confidence 488999999999999
No 279
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=22.33 E-value=51 Score=23.48 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.9
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+..|..=|..|.++|++|+++
T Consensus 14 GaiG~~lA~~L~~~g~~V~~~ 34 (313)
T PRK06249 14 GAIGGFYGAMLARAGFDVHFL 34 (313)
T ss_pred CHHHHHHHHHHHHCCCeEEEE
Confidence 345777899999999999998
No 280
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=22.32 E-value=75 Score=20.80 Aligned_cols=16 Identities=25% Similarity=0.059 Sum_probs=13.9
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
-++.|.+.|++|+|+.
T Consensus 23 l~~~L~~~g~~v~v~~ 38 (375)
T cd03821 23 LSKALAKLGHEVTVAT 38 (375)
T ss_pred HHHHHHhcCCcEEEEe
Confidence 4788999999999993
No 281
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=22.23 E-value=76 Score=24.51 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=17.0
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|..=++-|-++||.||||
T Consensus 46 MG~~M~~nLik~G~kVtV~ 64 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVY 64 (327)
T ss_pred chHHHHHHHHHcCCEEEEE
Confidence 4677889999999999999
No 282
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=22.19 E-value=70 Score=19.37 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=13.0
Q ss_pred chHHHHHhhcCceeEEee
Q 043447 10 SPRRSALKKAVTRVELWL 27 (65)
Q Consensus 10 ~~~A~~L~~~g~~v~vf~ 27 (65)
.++.+.|++.|.+|.|+.
T Consensus 109 ~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 109 APLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 467899999999988873
No 283
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=21.99 E-value=60 Score=22.70 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=17.3
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|.+-|..|.+.|++|++|
T Consensus 9 ~mG~~iA~~l~~~G~~V~~~ 28 (291)
T TIGR01505 9 IMGSPMSINLAKAGYQLHVT 28 (291)
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 45677889999999999999
No 284
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.92 E-value=56 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.9
Q ss_pred CCCCchHHHHHhhcCceeEEe
Q 043447 6 SSYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf 26 (65)
+.-|.+=|..|..+|++|++|
T Consensus 14 G~mG~~iA~~~a~~G~~V~l~ 34 (286)
T PRK07819 14 GQMGAGIAEVCARAGVDVLVF 34 (286)
T ss_pred cHHHHHHHHHHHhCCCEEEEE
Confidence 345778889999999999999
No 285
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=21.82 E-value=82 Score=21.22 Aligned_cols=17 Identities=18% Similarity=-0.091 Sum_probs=14.4
Q ss_pred hHHHHHhhcCceeEEee
Q 043447 11 PRRSALKKAVTRVELWL 27 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf~ 27 (65)
.-|+.|++.||+|+|+.
T Consensus 18 ~l~~~L~~~g~~v~v~~ 34 (355)
T cd03819 18 ELARALVERGHRSLVAS 34 (355)
T ss_pred HHHHHHHHcCCEEEEEc
Confidence 45789999999999884
No 286
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=21.73 E-value=76 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=13.9
Q ss_pred hHHHHHhhcCceeEEe
Q 043447 11 PRRSALKKAVTRVELW 26 (65)
Q Consensus 11 ~~A~~L~~~g~~v~vf 26 (65)
+=+++|++.||+|.|+
T Consensus 25 ~L~~aL~~~G~~v~v~ 40 (473)
T TIGR02095 25 ALPKALAALGHDVRVL 40 (473)
T ss_pred HHHHHHHHcCCeEEEE
Confidence 3468899999999999
No 287
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=21.69 E-value=83 Score=18.56 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHCCCC
Q 043447 50 SRFRKLVDCWLERGLV 65 (65)
Q Consensus 50 ~~F~~~v~~w~~~G~v 65 (65)
.+=++++++|++.|+|
T Consensus 34 nrAariid~lE~~GiV 49 (63)
T smart00843 34 NRAARLIDQLEEEGIV 49 (63)
T ss_pred hHHHHHHHHHHHCcCC
Confidence 3446788999998876
No 288
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=21.64 E-value=63 Score=22.88 Aligned_cols=21 Identities=29% Similarity=0.088 Sum_probs=17.8
Q ss_pred CCCchHHHHHhhcCceeEEee
Q 043447 7 SYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf~ 27 (65)
.-|.+-|..|.++||+|+++.
T Consensus 12 ~mG~~~A~~L~~~G~~V~~~~ 32 (341)
T PRK08229 12 SIGCYLGGRLAAAGADVTLIG 32 (341)
T ss_pred HHHHHHHHHHHhcCCcEEEEe
Confidence 346788999999999999993
No 289
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=21.63 E-value=55 Score=23.29 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.4
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|.+=|..|.++|++|++|
T Consensus 11 ~mG~~mA~~l~~~G~~V~v~ 30 (296)
T PRK15461 11 QMGSPMASNLLKQGHQLQVF 30 (296)
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 45678899999999999999
No 290
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=21.63 E-value=87 Score=24.77 Aligned_cols=18 Identities=33% Similarity=0.154 Sum_probs=16.6
Q ss_pred CchHHHHHhhcCceeEEe
Q 043447 9 GSPRRSALKKAVTRVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf 26 (65)
|+=+|..+.++|++|+||
T Consensus 15 GlMaA~~aa~~G~~V~li 32 (408)
T COG2081 15 GLMAAISAAKAGRRVLLI 32 (408)
T ss_pred HHHHHHHHhhcCCEEEEE
Confidence 667899999999999999
No 291
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=21.60 E-value=82 Score=21.63 Aligned_cols=16 Identities=19% Similarity=-0.122 Sum_probs=13.9
Q ss_pred HHHHHhhcCceeEEee
Q 043447 12 RRSALKKAVTRVELWL 27 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~ 27 (65)
=|+.|++.||+|+|+-
T Consensus 20 La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 20 VAEELIKRGVEVLWLG 35 (348)
T ss_pred HHHHHHhCCCEEEEEe
Confidence 4789999999999984
No 292
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=21.56 E-value=70 Score=26.12 Aligned_cols=21 Identities=14% Similarity=-0.134 Sum_probs=18.4
Q ss_pred CCCchH-HHHHhhcCceeEEee
Q 043447 7 SYGSPR-RSALKKAVTRVELWL 27 (65)
Q Consensus 7 ~~~~~~-A~~L~~~g~~v~vf~ 27 (65)
.-|.|+ |+.|++.|+.|++..
T Consensus 14 ~sG~salA~~L~~~G~~V~~sD 35 (809)
T PRK14573 14 GIGMSALAHILLDRGYSVSGSD 35 (809)
T ss_pred HHhHHHHHHHHHHCCCeEEEEC
Confidence 357899 999999999999984
No 293
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.34 E-value=62 Score=20.10 Aligned_cols=22 Identities=5% Similarity=0.380 Sum_probs=17.6
Q ss_pred ecccCCCCcccccccceeeecC
Q 043447 28 GRMIGSQPLIFDHAAQFFMPND 49 (65)
Q Consensus 28 GRma~~~~~~fDHGAQYFTar~ 49 (65)
|...+.+.-.+|.|+-||.=.+
T Consensus 62 ~~v~~~~~v~v~iG~g~~vE~~ 83 (126)
T TIGR00293 62 AKVKDTDKVLVSIGSGYYVEKD 83 (126)
T ss_pred EEeCCCCEEEEEcCCCEEEEec
Confidence 6666777778999999998543
No 294
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=21.09 E-value=70 Score=25.42 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=17.5
Q ss_pred CCchHHHHHhhcCceeEEe
Q 043447 8 YGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf 26 (65)
-|++.|-.|++.|++|.||
T Consensus 13 ~Gla~A~~l~r~G~~v~Vl 31 (420)
T KOG2614|consen 13 VGLATALALHRKGIDVVVL 31 (420)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 3788999999999999999
No 295
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=20.98 E-value=57 Score=18.63 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=17.2
Q ss_pred ceeeecChhHHHHHHHHHHCCCC
Q 043447 43 QFFMPNDSRFRKLVDCWLERGLV 65 (65)
Q Consensus 43 QYFTar~~~F~~~v~~w~~~G~v 65 (65)
+.|.++...|...++.|.+.+.+
T Consensus 38 ~~f~~~~~~ik~~Ie~LIekeyi 60 (68)
T PF10557_consen 38 KRFPPSVSDIKKRIESLIEKEYI 60 (68)
T ss_dssp TTS---HHHHHHHHHHHHHTTSE
T ss_pred CCcCCCHHHHHHHHHHHHHhhhh
Confidence 37889999999999999998864
No 296
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.94 E-value=77 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.2
Q ss_pred CCCCchHHHHHhhcCceeEEee
Q 043447 6 SSYGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 6 ~~~~~~~A~~L~~~g~~v~vf~ 27 (65)
++-|.++|+.|.+.|..|+|+.
T Consensus 17 G~sG~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 17 GREGRAAYRALRAHLPAQALTL 38 (468)
T ss_pred chhhHHHHHHHHHcCCEEEEEc
Confidence 3458899999999999999994
No 297
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=20.84 E-value=82 Score=23.13 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=22.4
Q ss_pred HHHHHhhcCceeEEee--ecccCCCCcccccccceeeecC
Q 043447 12 RRSALKKAVTRVELWL--GRMIGSQPLIFDHAAQFFMPND 49 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf~--GRma~~~~~~fDHGAQYFTar~ 49 (65)
-|..|.+.||+|+|+. +.-.. ....-++|..+..+..
T Consensus 23 ~a~~L~~~G~~V~ii~~~~~~~~-~~~~~~~~v~~~~~~~ 61 (415)
T cd03816 23 HALSLAKHGWKVDLVGYLETPPH-DEILSNPNITIHPLPP 61 (415)
T ss_pred HHHHHHhcCceEEEEEecCCCCC-HHHhcCCCEEEEECCC
Confidence 3678999999999995 32110 0102356777666643
No 298
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=20.73 E-value=74 Score=22.31 Aligned_cols=20 Identities=15% Similarity=-0.089 Sum_probs=17.4
Q ss_pred CCCchHHHHHhhcCceeEEe
Q 043447 7 SYGSPRRSALKKAVTRVELW 26 (65)
Q Consensus 7 ~~~~~~A~~L~~~g~~v~vf 26 (65)
.-|.|-|..|+++|++|.+|
T Consensus 10 ~mG~sla~~L~~~g~~V~~~ 29 (279)
T PRK07417 10 LIGGSLGLDLRSLGHTVYGV 29 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 35678899999999999999
No 299
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=20.72 E-value=90 Score=22.14 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCCchHHHHHhhc-----CceeEEe-------e-ecccCCCCcccccccce-eeecChhHHHHHH
Q 043447 7 SYGSPRRSALKKA-----VTRVELW-------L-GRMIGSQPLIFDHAAQF-FMPNDSRFRKLVD 57 (65)
Q Consensus 7 ~~~~~~A~~L~~~-----g~~v~vf-------~-GRma~~~~~~fDHGAQY-FTar~~~F~~~v~ 57 (65)
-|+.-.|+.|-+. |+.+..| . ++|..... ++||... .+.++.+++.+++
T Consensus 131 ~Y~~~~a~~i~~~~~~el~I~~v~~~~~~Yc~~~~~~~~~~~--cp~~~~~~~~iSgt~ir~~L~ 193 (215)
T PF01747_consen 131 FYDPYEAQEIFDEYAGELGIEPVPFPEMVYCPKCGQYVSAKT--CPHGKHHHISISGTEIRELLR 193 (215)
T ss_dssp SS-TTHHHHHHHHHHHHCTSEEEE---EEEETTTTEEEECGG--SSTTTGGGEE--HHHHHHHHH
T ss_pred cCCccHHHHHHHcCcccCCceEEecceEEEEcCCCeEeeccc--cCCCCCcceeeCHHHHHHHHH
Confidence 4777788877665 8777776 2 67765444 8898886 6778877776654
No 300
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.71 E-value=71 Score=23.64 Aligned_cols=20 Identities=5% Similarity=-0.213 Sum_probs=17.6
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|.|+++.|++.|+.|+++.
T Consensus 17 sG~s~~~~l~~~G~~v~~~D 36 (438)
T PRK03806 17 TGLSCVDFFLARGVTPRVID 36 (438)
T ss_pred HHHHHHHHHHHCCCeEEEEc
Confidence 47789999999999999984
No 301
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=20.69 E-value=63 Score=23.66 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=15.3
Q ss_pred CchHHHHHhhcCc--eeEEe
Q 043447 9 GSPRRSALKKAVT--RVELW 26 (65)
Q Consensus 9 ~~~~A~~L~~~g~--~v~vf 26 (65)
|+++|+.|++.+. +|+|+
T Consensus 12 Gl~aA~~l~~~~~~~~Vtli 31 (444)
T PRK09564 12 GMSAAAKAKRLNKELEITVY 31 (444)
T ss_pred HHHHHHHHHHHCCCCcEEEE
Confidence 7899999998764 78888
No 302
>COG1923 Hfq Uncharacterized host factor I protein [General function prediction only]
Probab=20.66 E-value=95 Score=19.34 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.0
Q ss_pred HHHHHhhcCceeEEe
Q 043447 12 RRSALKKAVTRVELW 26 (65)
Q Consensus 12 ~A~~L~~~g~~v~vf 26 (65)
.=++|++....|+||
T Consensus 11 fLn~~Rk~~i~VtIf 25 (77)
T COG1923 11 FLNALRKEKIPVTIF 25 (77)
T ss_pred HHHHHHhcCCeEEEE
Confidence 347899999999999
No 303
>PRK13748 putative mercuric reductase; Provisional
Probab=20.52 E-value=71 Score=24.36 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=18.3
Q ss_pred CCchHHHHHhhcCceeEEee
Q 043447 8 YGSPRRSALKKAVTRVELWL 27 (65)
Q Consensus 8 ~~~~~A~~L~~~g~~v~vf~ 27 (65)
-|+.+|..|.+.|.+|.|+.
T Consensus 109 aG~~aA~~~~~~G~~v~lie 128 (561)
T PRK13748 109 AAMAAALKAVEQGARVTLIE 128 (561)
T ss_pred HHHHHHHHHHhCCCeEEEEe
Confidence 48899999999999999994
No 304
>PF02471 OspE: Borrelia outer surface protein E; InterPro: IPR003483 This is a family of outer surface proteins (Osp) from the Borrelia spp. spirochete []. The family includes OspE, OspF, and OspEF-related proteins (Erp) []. These proteins are coded for on different circular plasmids in the Borrelia genome.
Probab=20.51 E-value=84 Score=20.67 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.0
Q ss_pred ccccceeeecChhHHHHHHHHHHCCC
Q 043447 39 DHAAQFFMPNDSRFRKLVDCWLERGL 64 (65)
Q Consensus 39 DHGAQYFTar~~~F~~~v~~w~~~G~ 64 (65)
-|-|.||+....+.-.+|+.+.+-|.
T Consensus 41 GhsatfFsleesEvNNFvkaMtegGs 66 (108)
T PF02471_consen 41 GHSATFFSLEESEVNNFVKAMTEGGS 66 (108)
T ss_pred CceEEEEEecHHHHHHHHHHHhcCCc
Confidence 48899999999999999999887663
No 305
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=20.23 E-value=3.2e+02 Score=20.15 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.1
Q ss_pred CchHHHHHhhcCceeEEeeeccc
Q 043447 9 GSPRRSALKKAVTRVELWLGRMI 31 (65)
Q Consensus 9 ~~~~A~~L~~~g~~v~vf~GRma 31 (65)
.+-|..+|.++|+.|.||++=+.
T Consensus 171 Ri~al~~l~eaGi~~~v~v~PIi 193 (297)
T COG1533 171 RLEALKELSEAGIPVGLFVAPII 193 (297)
T ss_pred HHHHHHHHHHCCCeEEEEEeccc
Confidence 34578899999999999954444
No 306
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=20.22 E-value=89 Score=18.42 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHCCCC
Q 043447 50 SRFRKLVDCWLERGLV 65 (65)
Q Consensus 50 ~~F~~~v~~w~~~G~v 65 (65)
.+=++++++|++.|+|
T Consensus 35 nrAariid~LE~~GiV 50 (65)
T PF09397_consen 35 NRAARIIDQLEEEGIV 50 (65)
T ss_dssp HHHHHHHHHHHHCTSB
T ss_pred HHHHHHHHHHHHCCCC
Confidence 3456788999999886
No 307
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=20.21 E-value=1.1e+02 Score=19.62 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCcccccccceeeecChhHHHHHHHHHH
Q 043447 34 QPLIFDHAAQFFMPNDSRFRKLVDCWLE 61 (65)
Q Consensus 34 ~~~~fDHGAQYFTar~~~F~~~v~~w~~ 61 (65)
.+..+|-|+.|--...+.|..+++++.+
T Consensus 30 g~~iiDSGT~~T~L~~~~y~~l~~al~~ 57 (161)
T PF14541_consen 30 GGTIIDSGTTYTYLPPPVYDALVQALDA 57 (161)
T ss_dssp CSEEE-SSSSSEEEEHHHHHHHHHHHHH
T ss_pred CCEEEECCCCccCCcHHHHHHHHHHHHH
Confidence 3457999999998999999999998875
No 308
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.01 E-value=1.3e+02 Score=18.21 Aligned_cols=33 Identities=6% Similarity=0.264 Sum_probs=22.4
Q ss_pred EEee-ecccCCCCcccccccceeeecC-hhHHHHH
Q 043447 24 ELWL-GRMIGSQPLIFDHAAQFFMPND-SRFRKLV 56 (65)
Q Consensus 24 ~vf~-GRma~~~~~~fDHGAQYFTar~-~~F~~~v 56 (65)
.+|+ |+..+.+.-.++.|+-||.=.+ ++-..++
T Consensus 58 ~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l 92 (129)
T cd00890 58 GLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFL 92 (129)
T ss_pred ceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHH
Confidence 3566 8888877788999988887443 3333333
Done!