BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043449
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 179 bits (454), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 90/103 (87%)
Query: 16 YHLKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGFEG 75
YHLKDAVL+GGIPFN AYGM +EYHG DPR+NK+FN GM HSTITMKK LE Y GFEG
Sbjct: 141 YHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEG 200
Query: 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAPAYP 118
LKS+VDVGGG GA +N I+SKYP+IKGINFDLPHVI+DAP+YP
Sbjct: 201 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYP 243
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 160 bits (406), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 95/116 (81%), Gaps = 1/116 (0%)
Query: 2 MLLASREINVVWGRYHLKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTI 61
+LLA+ ++ ++ ++LKDA+LEGGIPFN AYGMN ++YHG D R NK+FN GM S+STI
Sbjct: 131 LLLATDKV-LLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTI 189
Query: 62 TMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAPAY 117
TMKK LE Y GFEGL ++VDVGGG GA +MI++KYPSI INFDLPHVIQDAPA+
Sbjct: 190 TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF 245
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 85/103 (82%)
Query: 16 YHLKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGFEG 75
Y+LKDAVL+GGIPFN AYGM+ +EYHG DPR+N++FN GM +HS I KK LE Y GFEG
Sbjct: 142 YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG 201
Query: 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAPAYP 118
L ++VDVGGG+GA++ I + YP+IKG+NFDLPHVI +AP +P
Sbjct: 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFP 244
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 12 VWGRYHLKDAVLEGGIP-FNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENY 70
VW + K+AV++ I F +G+ YE+ GKD + N+IFN M MK+ LE Y
Sbjct: 147 VW--MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 204
Query: 71 KGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115
GFEG+ ++VDVGGG G +L +IISKYP IKGINFDLP VI++AP
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 103 bits (258), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 3/105 (2%)
Query: 12 VWGRYHLKDAVLEGGIP-FNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENY 70
VW + K+AV++ I F +G+ YE+ GKD + N+IFN K+ LE Y
Sbjct: 147 VWXNF--KEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIY 204
Query: 71 KGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115
GFEG+ ++VDVGGG G +L +IISKYP IKGINFDLP VI++AP
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 14 GRYH-LKDAVLEGGIP-FNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYK 71
G YH LK + E + F + G +++ K+P YN FN+ M S S + +
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDF 184
Query: 72 GFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQD 113
F+GL+S+VDVGGG G + +I +P +K I FD P V+++
Sbjct: 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 14 GRYH-LKDAVLEGGIP-FNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYK 71
G YH LK + E + F + G +++ K+P YN FN+ S S + +
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDF 184
Query: 72 GFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQD 113
F+GL+S+VDVGGG G + +I +P +K I FD P V+++
Sbjct: 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 16 YHLKDAVLEGGIP-FNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGFE 74
++LK V E + F + G + +E+ K+P YN ++N+ + S S + + FE
Sbjct: 133 HNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFE 192
Query: 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQD 113
GL+S+VDVGGG G + +I +P + + FD P V+++
Sbjct: 193 GLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVEN 231
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 17 HLKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGFEGL 76
L +V G F++A G + ++ +DP+ ++FN S S + Y F G
Sbjct: 145 QLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGA 203
Query: 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDA 114
+ VD+GGG G+ ++ +P ++G + P V ++A
Sbjct: 204 ATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEA 241
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 29 FNMAYGMNTYEYHGKDPRYNKI--FNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGI 86
F A G + +++ KD + + F + M S S + EN + FEGL+S+VDVGGG
Sbjct: 141 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGT 200
Query: 87 GASLNMIISKYPSIKGINFDLPHVI 111
G +I +P +K FD P V+
Sbjct: 201 GGVTKLIHEIFPHLKCTVFDQPQVV 225
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 20 DAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKF--LENYKGFEGLK 77
+A+L G F +A+G + Y Y + P + F M S + + L +++G +
Sbjct: 115 EALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDFRG----R 169
Query: 78 SVVDVGGGIGASLNMIISKYPSIKGINFD 106
S VDVGGG G I+ PS +G+ D
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLD 198
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 29 FNMAYGMNTYEYHGKDPRYN--KIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGI 86
F A G + +++ KD + +F + M S S + EN + FEGL+S+VDVGGG
Sbjct: 144 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGT 203
Query: 87 GASLNMIISKYPSIKGINFDLPHVI 111
G +I +P +K FD P V+
Sbjct: 204 GGVTKLIHEIFPHLKCTVFDQPQVV 228
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 29 FNMAYGMNTYEYHGKDPRYN--KIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGI 86
F A G + +++ KD + +F + M S S + EN + FEGL+S+VDVGGG
Sbjct: 145 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGT 204
Query: 87 GASLNMIISKYPSIKGINFDLPHVI 111
G +I +P +K FD P V+
Sbjct: 205 GGVTKLIHEIFPHLKCTVFDQPQVV 229
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 12 VWGRYHLKDAVLEGGIPFNMAYGMNTYE-----YHGKDPRYNKIFNNGMFSHSTITMKKF 66
WG HL DAV EG + +G+ E Y + R F + ++ +
Sbjct: 116 CWG--HLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQ--FMQALQEVWSVNGRSV 171
Query: 67 LENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDA 114
L + + D+GGG GA +S YP K FD+P V+ A
Sbjct: 172 LTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTA 218
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 57 SHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVI 111
S++ ++ LE K +G+K ++DVGGGIG ++ +P + +LP I
Sbjct: 173 SNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAI 226
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 44 DPRYNKIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGI 103
D R FN+ S + + F ++V+D+ GG G L ++ ++P + G
Sbjct: 149 DTRARDAFNDAXVRLSQPXVD-VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQ 207
Query: 104 NFDLP 108
+DLP
Sbjct: 208 IWDLP 212
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
M F EN K F +VD+ G+G + M YP G +F
Sbjct: 156 MTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSF 198
>pdb|3IZS|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|P Chain P, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|P Chain P, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit
Length = 199
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 23 LEGGIPFNMAYGMNTYEYHGKDPRYNKIFN---NGMFSHSTITMKKFLENYKGFEGL 76
L FN G +H + P ++IF GM SH T K LE K FEG+
Sbjct: 58 LRKATAFNKTRG----PFHFRAP--SRIFYKALRGMVSHKTARGKAALERLKVFEGI 108
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 18 LKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGFEGLK 77
L D V G + YG +E D F+ M + + + Y + ++
Sbjct: 126 LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVR 184
Query: 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107
V+DVGGG G L I + P ++G +L
Sbjct: 185 HVLDVGGGNGGMLAAIALRAPHLRGTLVEL 214
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGQLRYPSYPQSQGWEF 200
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1S1I|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 146
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 23 LEGGIPFNMAYGMNTYEYHGKDPRYNKIFN---NGMFSHSTITMKKFLENYKGFEGL 76
L FN G +H + P ++IF GM SH T K LE K FEG+
Sbjct: 57 LRKATAFNKTRG----PFHFRAP--SRIFYKALRGMVSHKTARGKAALERLKVFEGI 107
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 154 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 196
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|3JYW|M Chain M, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 178
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 23 LEGGIPFNMAYGMNTYEYHGKDPRYNKIFN---NGMFSHSTITMKKFLENYKGFEGL 76
L FN G +H + P ++IF GM SH T K LE K FEG+
Sbjct: 52 LRKATAFNKTRG----PFHFRAP--SRIFYKALRGMVSHKTARGKAALERLKVFEGI 102
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
M F EN K F +VD+ G+G + + YP G +F
Sbjct: 152 MTSFRENMKDFLDAGVIVDIEVGLGPAGELRYPSYPQSHGWSF 194
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINF 105
MK F EN F ++D+ G+G + + YP +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIYVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 62 TMKKFLENYKGFEGLKSVVDVGGGIGASLNM 92
++K+FL+ +K F+G+ + GG GA+ N+
Sbjct: 273 SVKEFLQTWKFFDGVDIAWEFPGGKGANPNL 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,751,930
Number of Sequences: 62578
Number of extensions: 150408
Number of successful extensions: 442
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 54
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)