Query 043449
Match_columns 118
No_of_seqs 201 out of 1086
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.9 4.8E-28 1E-32 172.0 6.4 110 5-115 30-140 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.8 2E-20 4.4E-25 137.5 6.7 115 3-117 105-219 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.5 3E-14 6.6E-19 104.5 7.7 96 13-116 94-190 (306)
4 PRK06922 hypothetical protein; 98.6 6.2E-08 1.3E-12 77.4 6.2 80 35-115 377-459 (677)
5 PF12847 Methyltransf_18: Meth 98.4 1.6E-07 3.5E-12 58.7 3.1 41 76-116 2-43 (112)
6 PRK08287 cobalt-precorrin-6Y C 98.4 5.6E-07 1.2E-11 61.6 5.0 64 51-115 6-72 (187)
7 PRK14103 trans-aconitate 2-met 98.3 2.5E-06 5.3E-11 61.1 7.4 52 64-116 19-71 (255)
8 PRK01683 trans-aconitate 2-met 98.2 5.9E-06 1.3E-10 59.1 6.6 53 63-116 20-73 (258)
9 TIGR02469 CbiT precorrin-6Y C5 98.1 6.1E-06 1.3E-10 52.1 5.2 48 66-114 11-59 (124)
10 COG4106 Tam Trans-aconitate me 98.1 1.1E-05 2.3E-10 57.0 5.9 58 57-116 14-72 (257)
11 PRK04457 spermidine synthase; 98.1 3.7E-06 8E-11 60.8 3.7 42 75-116 66-108 (262)
12 PRK15001 SAM-dependent 23S rib 98.1 7.7E-06 1.7E-10 62.1 5.2 50 65-115 219-269 (378)
13 PRK07402 precorrin-6B methylas 98.1 7.3E-06 1.6E-10 56.5 4.6 50 66-116 32-82 (196)
14 COG2813 RsmC 16S RNA G1207 met 98.0 1.6E-05 3.5E-10 58.4 5.4 52 64-116 148-200 (300)
15 PF08242 Methyltransf_12: Meth 98.0 2.3E-06 5.1E-11 52.5 0.8 37 80-116 1-38 (99)
16 PF13847 Methyltransf_31: Meth 98.0 1.1E-05 2.4E-10 53.4 4.0 42 75-116 3-46 (152)
17 TIGR00740 methyltransferase, p 98.0 1E-05 2.2E-10 57.4 4.0 43 74-116 52-97 (239)
18 TIGR02021 BchM-ChlM magnesium 97.9 2.9E-05 6.3E-10 54.3 6.0 77 37-115 16-94 (219)
19 PRK00107 gidB 16S rRNA methylt 97.9 2.5E-05 5.3E-10 54.0 5.5 41 75-115 45-86 (187)
20 TIGR00091 tRNA (guanine-N(7)-) 97.9 1.5E-05 3.2E-10 55.1 4.0 40 75-114 16-56 (194)
21 TIGR03587 Pse_Me-ase pseudamin 97.9 2.5E-05 5.5E-10 54.5 5.1 43 74-116 42-85 (204)
22 PRK15451 tRNA cmo(5)U34 methyl 97.9 1.4E-05 3E-10 57.1 3.8 42 75-116 56-100 (247)
23 TIGR02752 MenG_heptapren 2-hep 97.9 2.9E-05 6.3E-10 54.6 5.2 50 65-115 36-87 (231)
24 PF05175 MTS: Methyltransferas 97.9 1E-05 2.2E-10 54.8 2.5 41 75-115 31-72 (170)
25 PRK00121 trmB tRNA (guanine-N( 97.8 3E-05 6.4E-10 53.9 4.7 41 75-115 40-81 (202)
26 PRK06202 hypothetical protein; 97.8 8.8E-05 1.9E-09 52.3 6.8 43 74-116 59-106 (232)
27 PRK09489 rsmC 16S ribosomal RN 97.8 4.6E-05 1E-09 57.2 5.2 49 66-115 188-237 (342)
28 PRK10258 biotin biosynthesis p 97.8 0.00013 2.8E-09 52.0 7.3 66 48-116 10-82 (251)
29 TIGR00138 gidB 16S rRNA methyl 97.8 2.3E-05 5E-10 53.7 3.2 39 76-114 43-82 (181)
30 COG2890 HemK Methylase of poly 97.8 1.9E-05 4.1E-10 57.7 2.6 39 78-116 113-152 (280)
31 PRK11207 tellurite resistance 97.7 5.2E-05 1.1E-09 52.5 4.6 50 63-115 19-69 (197)
32 PRK08317 hypothetical protein; 97.7 8.8E-05 1.9E-09 51.7 5.4 48 66-114 11-60 (241)
33 PRK00274 ksgA 16S ribosomal RN 97.7 0.0001 2.2E-09 53.6 5.5 49 64-115 32-81 (272)
34 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00012 2.7E-09 55.7 6.2 40 75-114 122-162 (390)
35 COG2242 CobL Precorrin-6B meth 97.7 7E-05 1.5E-09 51.6 4.3 46 68-114 28-74 (187)
36 PF13649 Methyltransf_25: Meth 97.7 3.5E-05 7.7E-10 47.5 2.7 37 79-115 1-41 (101)
37 PRK11036 putative S-adenosyl-L 97.7 0.00013 2.8E-09 52.3 5.9 39 75-115 44-83 (255)
38 PRK11805 N5-glutamine S-adenos 97.7 3.4E-05 7.3E-10 57.1 2.9 40 77-116 135-175 (307)
39 TIGR03533 L3_gln_methyl protei 97.7 4.7E-05 1E-09 55.7 3.5 41 76-116 122-163 (284)
40 smart00828 PKS_MT Methyltransf 97.6 6.2E-05 1.3E-09 52.6 3.8 38 77-114 1-39 (224)
41 PRK00216 ubiE ubiquinone/menaq 97.6 0.00014 3.1E-09 50.8 5.5 49 66-115 43-93 (239)
42 smart00650 rADc Ribosomal RNA 97.6 0.00011 2.4E-09 49.5 4.7 47 65-114 4-51 (169)
43 TIGR03704 PrmC_rel_meth putati 97.6 0.0001 2.2E-09 53.0 4.7 41 76-116 87-128 (251)
44 COG2226 UbiE Methylase involve 97.6 9.1E-05 2E-09 53.0 4.1 42 75-116 51-93 (238)
45 PRK14966 unknown domain/N5-glu 97.6 6.5E-05 1.4E-09 57.7 3.5 42 75-116 251-293 (423)
46 PLN02366 spermidine synthase 97.6 8.7E-05 1.9E-09 55.0 3.9 42 74-116 90-133 (308)
47 TIGR02072 BioC biotin biosynth 97.6 0.00011 2.5E-09 51.2 4.1 39 76-114 35-74 (240)
48 TIGR00477 tehB tellurite resis 97.5 0.00014 3.1E-09 50.2 4.5 47 65-114 21-68 (195)
49 PTZ00098 phosphoethanolamine N 97.5 0.00019 4.2E-09 51.8 5.1 51 63-115 41-92 (263)
50 PLN02244 tocopherol O-methyltr 97.5 0.0002 4.4E-09 53.6 5.3 40 74-114 117-157 (340)
51 PRK01544 bifunctional N5-gluta 97.5 7.9E-05 1.7E-09 58.6 3.2 41 76-116 139-180 (506)
52 TIGR00536 hemK_fam HemK family 97.5 7.8E-05 1.7E-09 54.4 3.0 40 77-116 116-156 (284)
53 PRK05785 hypothetical protein; 97.5 0.00015 3.2E-09 51.4 4.2 40 76-116 52-92 (226)
54 PRK00811 spermidine synthase; 97.5 0.0001 2.2E-09 53.9 3.4 43 74-116 75-118 (283)
55 PRK01581 speE spermidine synth 97.5 0.00014 3.1E-09 55.0 4.1 43 74-116 149-192 (374)
56 TIGR01934 MenG_MenH_UbiE ubiqu 97.5 0.00025 5.4E-09 49.1 5.0 48 66-114 31-80 (223)
57 TIGR03534 RF_mod_PrmC protein- 97.5 0.00013 2.7E-09 51.7 3.3 40 76-115 88-128 (251)
58 PLN02233 ubiquinone biosynthes 97.4 0.00028 6E-09 51.0 5.1 43 73-115 71-115 (261)
59 PRK09328 N5-glutamine S-adenos 97.4 0.0003 6.5E-09 50.6 5.1 42 74-115 107-149 (275)
60 TIGR00080 pimt protein-L-isoas 97.4 0.00038 8.3E-09 48.7 5.3 50 65-115 68-119 (215)
61 TIGR03438 probable methyltrans 97.4 0.00025 5.3E-09 52.3 4.4 40 75-114 63-104 (301)
62 PLN02336 phosphoethanolamine N 97.4 0.00034 7.4E-09 54.3 5.3 48 66-115 258-306 (475)
63 COG4123 Predicted O-methyltran 97.4 0.00023 5E-09 51.2 4.0 43 73-115 42-85 (248)
64 COG2230 Cfa Cyclopropane fatty 97.4 0.00036 7.8E-09 51.1 5.1 49 63-113 61-110 (283)
65 PF13659 Methyltransf_26: Meth 97.4 0.00028 6.1E-09 44.2 4.0 38 77-115 2-40 (117)
66 PRK11705 cyclopropane fatty ac 97.4 0.00037 8E-09 53.1 5.3 48 66-115 159-207 (383)
67 PRK00377 cbiT cobalt-precorrin 97.3 0.00043 9.3E-09 47.8 4.9 46 69-115 35-82 (198)
68 PF01209 Ubie_methyltran: ubiE 97.3 0.0002 4.3E-09 51.0 3.2 43 73-115 45-89 (233)
69 PF02390 Methyltransf_4: Putat 97.3 0.00056 1.2E-08 47.5 5.2 37 76-112 18-55 (195)
70 PLN02490 MPBQ/MSBQ methyltrans 97.3 0.00034 7.4E-09 52.5 4.4 42 75-116 113-155 (340)
71 TIGR00755 ksgA dimethyladenosi 97.3 0.00057 1.2E-08 49.0 5.4 48 64-114 19-67 (253)
72 PRK13944 protein-L-isoaspartat 97.3 0.00067 1.5E-08 47.2 5.4 49 66-115 64-114 (205)
73 PRK07580 Mg-protoporphyrin IX 97.3 0.00046 1E-08 48.2 4.5 40 74-115 62-102 (230)
74 smart00138 MeTrc Methyltransfe 97.3 0.0016 3.4E-08 47.2 7.3 42 75-116 99-150 (264)
75 PRK11088 rrmA 23S rRNA methylt 97.3 0.00037 8E-09 50.5 4.0 41 75-115 85-129 (272)
76 TIGR00537 hemK_rel_arch HemK-r 97.3 0.00033 7.2E-09 47.5 3.5 39 75-115 19-58 (179)
77 PRK13942 protein-L-isoaspartat 97.3 0.00076 1.7E-08 47.2 5.4 50 65-115 67-118 (212)
78 PRK14896 ksgA 16S ribosomal RN 97.3 0.00066 1.4E-08 48.9 5.2 49 63-114 18-67 (258)
79 PRK12335 tellurite resistance 97.2 0.00053 1.1E-08 50.1 4.4 46 66-114 112-158 (287)
80 TIGR01444 fkbM_fam methyltrans 97.2 0.00037 8.1E-09 45.2 3.3 37 78-114 1-38 (143)
81 PF13489 Methyltransf_23: Meth 97.2 0.002 4.3E-08 42.2 6.8 36 74-111 21-57 (161)
82 PF13679 Methyltransf_32: Meth 97.2 0.00041 9E-09 45.5 3.4 41 74-114 24-69 (141)
83 PRK00517 prmA ribosomal protei 97.2 0.00032 7E-09 50.2 2.8 41 75-116 119-160 (250)
84 PF06325 PrmA: Ribosomal prote 97.2 0.00025 5.5E-09 52.3 2.1 62 50-115 139-201 (295)
85 TIGR00406 prmA ribosomal prote 97.1 0.00038 8.2E-09 51.0 3.0 62 50-115 137-199 (288)
86 PHA03411 putative methyltransf 97.1 0.00059 1.3E-08 49.9 3.9 41 76-116 65-106 (279)
87 KOG1540 Ubiquinone biosynthesi 97.1 0.00053 1.1E-08 49.6 3.4 41 76-116 101-148 (296)
88 PF08241 Methyltransf_11: Meth 97.1 0.00045 9.8E-09 41.1 2.7 35 80-115 1-36 (95)
89 PF02353 CMAS: Mycolic acid cy 97.1 0.00092 2E-08 48.8 4.7 42 64-107 52-93 (273)
90 PRK03612 spermidine synthase; 97.1 0.00078 1.7E-08 53.2 4.6 42 74-116 296-339 (521)
91 PRK00050 16S rRNA m(4)C1402 me 97.1 0.0015 3.3E-08 48.2 5.5 52 64-116 9-62 (296)
92 PLN02672 methionine S-methyltr 97.0 0.00048 1E-08 58.4 3.1 39 77-115 120-159 (1082)
93 TIGR00438 rrmJ cell division p 97.0 0.0022 4.8E-08 43.8 5.9 42 68-109 25-67 (188)
94 PRK15068 tRNA mo(5)U34 methylt 97.0 0.0019 4E-08 48.2 5.7 33 75-108 122-154 (322)
95 PRK14968 putative methyltransf 97.0 0.001 2.2E-08 44.9 3.9 39 74-114 22-61 (188)
96 KOG2899 Predicted methyltransf 97.0 0.00082 1.8E-08 48.4 3.5 52 65-116 47-100 (288)
97 TIGR00417 speE spermidine synt 97.0 0.00074 1.6E-08 49.0 3.3 43 74-116 71-114 (270)
98 PRK11188 rrmJ 23S rRNA methylt 97.0 0.0022 4.8E-08 44.9 5.6 44 66-109 42-86 (209)
99 COG0421 SpeE Spermidine syntha 97.0 0.00094 2E-08 49.0 3.8 44 74-117 75-119 (282)
100 PRK04266 fibrillarin; Provisio 97.0 0.0026 5.7E-08 45.1 5.8 42 70-112 68-110 (226)
101 PLN02585 magnesium protoporphy 97.0 0.00091 2E-08 49.7 3.6 38 76-115 145-183 (315)
102 PLN03075 nicotianamine synthas 96.9 0.0017 3.6E-08 48.0 4.8 42 75-116 123-167 (296)
103 PLN02396 hexaprenyldihydroxybe 96.9 0.0012 2.7E-08 49.2 4.1 38 76-115 132-170 (322)
104 COG2264 PrmA Ribosomal protein 96.9 0.00057 1.2E-08 50.4 2.3 63 50-116 140-203 (300)
105 TIGR00452 methyltransferase, p 96.9 0.0026 5.7E-08 47.3 5.6 32 75-107 121-152 (314)
106 cd02440 AdoMet_MTases S-adenos 96.9 0.0013 2.8E-08 38.9 3.3 35 78-113 1-36 (107)
107 PLN02336 phosphoethanolamine N 96.9 0.0027 5.9E-08 49.3 5.8 49 63-114 26-75 (475)
108 PRK11873 arsM arsenite S-adeno 96.9 0.0017 3.6E-08 46.9 4.3 44 73-116 75-120 (272)
109 PHA03412 putative methyltransf 96.8 0.0011 2.5E-08 47.4 3.2 41 76-116 50-94 (241)
110 PRK11727 23S rRNA mA1618 methy 96.8 0.0013 2.7E-08 49.1 3.4 42 75-116 114-156 (321)
111 COG0220 Predicted S-adenosylme 96.8 0.0039 8.4E-08 44.4 5.6 32 76-107 49-80 (227)
112 PLN02823 spermine synthase 96.8 0.0016 3.6E-08 48.8 3.7 42 75-116 103-145 (336)
113 PRK00536 speE spermidine synth 96.8 0.0014 3E-08 47.6 3.2 41 74-116 71-112 (262)
114 PRK13943 protein-L-isoaspartat 96.8 0.0035 7.7E-08 46.8 5.4 49 66-115 72-122 (322)
115 KOG2904 Predicted methyltransf 96.7 0.0016 3.4E-08 47.7 3.2 40 75-114 148-188 (328)
116 PRK14967 putative methyltransf 96.7 0.0024 5.2E-08 44.9 4.2 41 73-114 34-75 (223)
117 PTZ00338 dimethyladenosine tra 96.7 0.0033 7.1E-08 46.4 4.9 48 64-114 26-74 (294)
118 TIGR02081 metW methionine bios 96.7 0.0027 5.8E-08 43.6 4.1 39 75-114 13-52 (194)
119 PRK10901 16S rRNA methyltransf 96.6 0.0033 7.1E-08 48.5 4.4 49 66-115 236-285 (427)
120 COG2227 UbiG 2-polyprenyl-3-me 96.6 0.002 4.3E-08 46.1 3.0 39 76-116 60-99 (243)
121 PRK13168 rumA 23S rRNA m(5)U19 96.5 0.0024 5.3E-08 49.4 3.3 47 66-115 289-336 (443)
122 PRK14902 16S rRNA methyltransf 96.5 0.0045 9.9E-08 47.9 4.5 49 66-115 242-292 (444)
123 PF07021 MetW: Methionine bios 96.5 0.0054 1.2E-07 42.6 4.3 32 75-107 13-44 (193)
124 PRK00312 pcm protein-L-isoaspa 96.4 0.0082 1.8E-07 41.7 5.1 47 66-115 70-117 (212)
125 PRK05134 bifunctional 3-demeth 96.4 0.0087 1.9E-07 42.0 5.1 38 75-114 48-86 (233)
126 PF01564 Spermine_synth: Sperm 96.3 0.0019 4E-08 46.4 1.6 42 75-116 76-118 (246)
127 COG2263 Predicted RNA methylas 96.3 0.0042 9.1E-08 43.1 3.1 41 75-116 45-86 (198)
128 PRK03522 rumB 23S rRNA methylu 96.3 0.007 1.5E-07 44.8 4.4 38 76-115 174-212 (315)
129 PF10294 Methyltransf_16: Puta 96.2 0.0081 1.8E-07 40.8 4.1 40 75-114 45-84 (173)
130 PRK04148 hypothetical protein; 96.2 0.011 2.4E-07 38.8 4.6 47 66-115 8-56 (134)
131 PF03848 TehB: Tellurite resis 96.1 0.02 4.4E-07 39.7 5.7 42 64-108 20-61 (192)
132 TIGR01983 UbiG ubiquinone bios 96.1 0.0076 1.6E-07 41.9 3.5 38 75-114 45-83 (224)
133 TIGR03840 TMPT_Se_Te thiopurin 96.1 0.019 4.1E-07 40.4 5.5 38 74-113 33-71 (213)
134 PRK10909 rsmD 16S rRNA m(2)G96 96.0 0.011 2.4E-07 41.2 3.9 39 76-115 54-93 (199)
135 PLN02781 Probable caffeoyl-CoA 96.0 0.019 4E-07 40.9 5.1 44 73-116 66-111 (234)
136 TIGR00095 RNA methyltransferas 95.9 0.0085 1.9E-07 41.3 3.2 38 76-114 50-88 (189)
137 TIGR00478 tly hemolysin TlyA f 95.9 0.032 7E-07 39.7 6.0 44 64-109 64-108 (228)
138 PRK01544 bifunctional N5-gluta 95.9 0.014 3.1E-07 46.0 4.5 33 75-107 347-379 (506)
139 TIGR00563 rsmB ribosomal RNA s 95.7 0.015 3.3E-07 44.8 4.2 48 66-114 230-278 (426)
140 KOG1270 Methyltransferases [Co 95.7 0.0073 1.6E-07 43.9 2.2 38 77-116 91-129 (282)
141 KOG1271 Methyltransferases [Ge 95.7 0.016 3.4E-07 40.3 3.7 32 76-107 68-99 (227)
142 TIGR00479 rumA 23S rRNA (uraci 95.7 0.011 2.4E-07 45.5 3.3 42 73-116 290-332 (431)
143 KOG3420 Predicted RNA methylas 95.7 0.0086 1.9E-07 40.1 2.3 46 68-116 42-89 (185)
144 PF01135 PCMT: Protein-L-isoas 95.7 0.023 5E-07 39.9 4.5 50 65-115 63-114 (209)
145 PF07757 AdoMet_MTase: Predict 95.7 0.019 4.2E-07 36.3 3.6 31 74-106 57-87 (112)
146 TIGR02085 meth_trns_rumB 23S r 95.6 0.0098 2.1E-07 45.2 2.7 38 76-115 234-272 (374)
147 COG4976 Predicted methyltransf 95.6 0.015 3.4E-07 41.7 3.5 40 73-114 123-163 (287)
148 PRK13255 thiopurine S-methyltr 95.6 0.037 8E-07 39.0 5.4 38 74-113 36-74 (218)
149 PF01728 FtsJ: FtsJ-like methy 95.5 0.021 4.5E-07 38.7 3.7 46 65-110 11-59 (181)
150 TIGR01177 conserved hypothetic 95.4 0.028 6E-07 41.9 4.4 48 65-115 173-221 (329)
151 PF05148 Methyltransf_8: Hypot 95.3 0.057 1.2E-06 38.2 5.4 69 37-108 30-102 (219)
152 PF08003 Methyltransf_9: Prote 95.2 0.028 6E-07 41.8 3.8 30 76-106 116-145 (315)
153 KOG3115 Methyltransferase-like 95.2 0.01 2.3E-07 41.8 1.5 31 77-107 62-92 (249)
154 KOG1499 Protein arginine N-met 95.0 0.028 6E-07 42.3 3.4 40 75-115 60-99 (346)
155 PF00398 RrnaAD: Ribosomal RNA 94.9 0.053 1.1E-06 39.1 4.5 42 63-107 19-60 (262)
156 PF02527 GidB: rRNA small subu 94.8 0.07 1.5E-06 36.8 4.8 30 78-107 51-80 (184)
157 COG0357 GidB Predicted S-adeno 94.8 0.059 1.3E-06 38.1 4.4 31 76-106 68-98 (215)
158 KOG1541 Predicted protein carb 94.8 0.015 3.2E-07 41.6 1.3 39 75-115 50-89 (270)
159 PF05401 NodS: Nodulation prot 94.7 0.022 4.9E-07 39.7 2.1 45 69-116 38-83 (201)
160 PTZ00146 fibrillarin; Provisio 94.7 0.083 1.8E-06 39.1 5.1 36 73-108 130-166 (293)
161 TIGR02143 trmA_only tRNA (urac 94.6 0.044 9.5E-07 41.4 3.6 37 77-115 199-236 (353)
162 PF08123 DOT1: Histone methyla 94.6 0.095 2.1E-06 36.7 5.0 45 66-111 34-79 (205)
163 PF09243 Rsm22: Mitochondrial 94.6 0.083 1.8E-06 38.5 4.9 47 66-113 25-73 (274)
164 PRK14903 16S rRNA methyltransf 94.5 0.069 1.5E-06 41.4 4.6 42 73-114 235-278 (431)
165 PRK05031 tRNA (uracil-5-)-meth 94.4 0.037 8.1E-07 41.9 2.8 37 77-115 208-245 (362)
166 COG2518 Pcm Protein-L-isoaspar 94.4 0.071 1.5E-06 37.6 3.9 48 65-115 63-111 (209)
167 PF06080 DUF938: Protein of un 94.3 0.07 1.5E-06 37.4 3.8 30 78-107 28-57 (204)
168 PF05185 PRMT5: PRMT5 arginine 94.3 0.12 2.6E-06 40.3 5.5 64 37-107 152-222 (448)
169 COG0030 KsgA Dimethyladenosine 94.3 0.15 3.3E-06 37.1 5.5 43 63-106 19-61 (259)
170 PRK14904 16S rRNA methyltransf 94.1 0.088 1.9E-06 40.9 4.3 43 73-115 248-292 (445)
171 PRK14901 16S rRNA methyltransf 94.0 0.084 1.8E-06 40.9 4.2 46 68-114 246-293 (434)
172 PF12147 Methyltransf_20: Puta 93.7 0.087 1.9E-06 39.0 3.5 41 74-114 134-177 (311)
173 KOG2361 Predicted methyltransf 93.6 0.1 2.3E-06 37.6 3.6 40 77-116 73-115 (264)
174 PF01596 Methyltransf_3: O-met 93.6 0.076 1.6E-06 37.2 2.9 42 74-115 44-87 (205)
175 TIGR00446 nop2p NOL1/NOP2/sun 93.5 0.14 3.1E-06 37.0 4.4 42 73-114 69-112 (264)
176 COG4262 Predicted spermidine s 93.5 0.15 3.2E-06 39.2 4.5 41 74-115 288-330 (508)
177 PRK15128 23S rRNA m(5)C1962 me 93.4 0.082 1.8E-06 40.6 3.1 40 75-115 220-260 (396)
178 PF04816 DUF633: Family of unk 93.3 0.059 1.3E-06 37.8 2.0 36 79-114 1-37 (205)
179 KOG3010 Methyltransferase [Gen 93.2 0.1 2.3E-06 37.6 3.2 40 75-116 33-73 (261)
180 PRK04338 N(2),N(2)-dimethylgua 93.1 0.096 2.1E-06 40.1 3.0 39 77-115 59-98 (382)
181 PRK11783 rlmL 23S rRNA m(2)G24 92.8 0.11 2.3E-06 42.8 3.1 41 75-116 538-579 (702)
182 TIGR00006 S-adenosyl-methyltra 92.7 0.35 7.6E-06 36.0 5.4 51 64-115 10-61 (305)
183 PF03141 Methyltransf_29: Puta 92.5 0.12 2.6E-06 40.7 2.9 23 75-97 117-139 (506)
184 PLN02476 O-methyltransferase 92.4 0.18 3.9E-06 37.0 3.5 44 73-116 116-161 (278)
185 PF04072 LCM: Leucine carboxyl 91.3 0.66 1.4E-05 31.6 5.2 39 75-113 78-116 (183)
186 PF01795 Methyltransf_5: MraW 91.1 0.5 1.1E-05 35.3 4.7 52 64-116 10-62 (310)
187 KOG0820 Ribosomal RNA adenine 91.0 0.77 1.7E-05 33.9 5.4 43 63-106 47-89 (315)
188 COG2519 GCD14 tRNA(1-methylade 90.9 0.53 1.1E-05 34.2 4.5 64 51-115 67-136 (256)
189 PF01170 UPF0020: Putative RNA 90.8 0.3 6.6E-06 33.3 3.1 51 64-115 18-78 (179)
190 COG3963 Phospholipid N-methylt 90.3 0.58 1.3E-05 32.2 4.1 36 61-97 35-70 (194)
191 COG4122 Predicted O-methyltran 90.3 0.37 8.1E-06 34.2 3.3 44 73-116 57-102 (219)
192 PRK11760 putative 23S rRNA C24 90.2 0.66 1.4E-05 35.2 4.6 35 75-111 211-245 (357)
193 PF05219 DREV: DREV methyltran 90.0 0.47 1E-05 34.6 3.6 29 75-103 94-122 (265)
194 PF05206 TRM13: Methyltransfer 89.7 1.2 2.7E-05 32.3 5.7 37 73-109 16-57 (259)
195 TIGR02987 met_A_Alw26 type II 89.6 0.27 5.9E-06 38.9 2.4 39 75-113 31-78 (524)
196 KOG4589 Cell division protein 89.6 0.76 1.6E-05 32.2 4.3 44 68-111 62-106 (232)
197 PF05724 TPMT: Thiopurine S-me 89.5 0.78 1.7E-05 32.4 4.4 40 73-114 35-75 (218)
198 PF02475 Met_10: Met-10+ like- 88.8 0.76 1.7E-05 32.1 3.9 39 74-112 100-139 (200)
199 PF12692 Methyltransf_17: S-ad 88.5 4 8.7E-05 27.5 6.9 58 48-108 4-61 (160)
200 PF04672 Methyltransf_19: S-ad 87.7 1.1 2.3E-05 32.9 4.1 41 75-115 68-112 (267)
201 PF09445 Methyltransf_15: RNA 87.4 0.42 9.2E-06 32.4 1.9 37 77-114 1-37 (163)
202 COG4883 Uncharacterized protei 87.2 1.8 3.8E-05 32.7 5.1 86 11-96 68-161 (500)
203 PF08704 GCD14: tRNA methyltra 87.2 2.9 6.2E-05 30.2 6.1 57 50-107 12-73 (247)
204 COG0293 FtsJ 23S rRNA methylas 87.2 2.6 5.5E-05 29.7 5.7 47 64-110 34-81 (205)
205 KOG3191 Predicted N6-DNA-methy 87.1 1 2.2E-05 31.4 3.6 38 76-113 44-83 (209)
206 KOG1661 Protein-L-isoaspartate 86.8 0.41 8.8E-06 34.0 1.5 43 74-116 81-126 (237)
207 PRK11783 rlmL 23S rRNA m(2)G24 86.3 1.4 3E-05 36.4 4.6 33 63-96 178-211 (702)
208 PF11312 DUF3115: Protein of u 86.0 1.2 2.7E-05 33.3 3.8 22 76-97 87-108 (315)
209 PF02636 Methyltransf_28: Puta 86.0 1.2 2.6E-05 31.8 3.7 33 76-108 19-59 (252)
210 PF03514 GRAS: GRAS domain fam 85.8 1.1 2.4E-05 34.2 3.6 46 63-109 99-151 (374)
211 COG2384 Predicted SAM-dependen 85.7 1.2 2.5E-05 31.8 3.4 32 76-107 17-48 (226)
212 PLN02589 caffeoyl-CoA O-methyl 85.5 0.99 2.1E-05 32.6 3.1 43 73-115 77-121 (247)
213 KOG1500 Protein arginine N-met 85.2 1.6 3.4E-05 33.4 4.1 23 73-96 176-198 (517)
214 PLN02668 indole-3-acetate carb 85.0 2.4 5.1E-05 32.7 5.0 35 75-109 63-112 (386)
215 KOG3045 Predicted RNA methylas 84.3 2.6 5.7E-05 31.1 4.7 54 38-91 139-196 (325)
216 KOG2793 Putative N2,N2-dimethy 84.0 1.5 3.3E-05 31.7 3.5 41 73-114 83-124 (248)
217 COG0275 Predicted S-adenosylme 83.5 3.3 7.2E-05 30.9 5.0 52 64-116 13-66 (314)
218 PRK13256 thiopurine S-methyltr 83.2 4.1 8.9E-05 29.0 5.3 37 75-113 43-80 (226)
219 KOG2187 tRNA uracil-5-methyltr 83.0 1.3 2.8E-05 35.3 2.9 43 73-116 381-423 (534)
220 PF02384 N6_Mtase: N-6 DNA Met 82.5 2 4.4E-05 31.4 3.7 39 73-111 44-90 (311)
221 KOG2918 Carboxymethyl transfer 82.4 1.8 4E-05 32.5 3.4 41 73-113 85-127 (335)
222 COG1565 Uncharacterized conser 82.0 6.2 0.00013 30.2 6.1 49 44-97 51-99 (370)
223 TIGR03329 Phn_aa_oxid putative 81.9 1.8 3.9E-05 33.6 3.4 34 77-110 25-60 (460)
224 TIGR00308 TRM1 tRNA(guanine-26 80.4 1.7 3.7E-05 33.3 2.7 38 77-114 46-85 (374)
225 PF03291 Pox_MCEL: mRNA cappin 79.9 1.5 3.3E-05 33.0 2.3 39 75-115 62-102 (331)
226 KOG1709 Guanidinoacetate methy 78.7 7.1 0.00015 28.2 5.2 59 55-115 83-141 (271)
227 KOG2651 rRNA adenine N-6-methy 78.5 2.8 6.1E-05 32.5 3.3 34 73-107 151-184 (476)
228 PF06406 StbA: StbA protein; 78.1 7.4 0.00016 28.9 5.5 62 49-110 246-309 (318)
229 KOG2940 Predicted methyltransf 77.6 3.2 7E-05 30.2 3.2 40 75-115 72-112 (325)
230 COG1352 CheR Methylase of chem 75.7 16 0.00034 26.8 6.4 80 37-116 46-147 (268)
231 COG5459 Predicted rRNA methyla 75.0 2.8 6E-05 32.3 2.4 38 69-107 108-146 (484)
232 cd00006 PTS_IIA_man PTS_IIA, P 74.9 7.6 0.00016 24.5 4.2 47 68-114 52-100 (122)
233 COG1189 Predicted rRNA methyla 74.6 5.5 0.00012 28.8 3.8 31 65-96 69-100 (245)
234 COG0248 GppA Exopolyphosphatas 74.0 3 6.5E-05 33.2 2.5 22 65-87 120-141 (492)
235 cd02190 epsilon_tubulin The tu 74.0 8.6 0.00019 29.4 5.0 37 65-101 91-132 (379)
236 COG2521 Predicted archaeal met 71.8 5.6 0.00012 29.0 3.3 44 75-118 134-177 (287)
237 PF09959 DUF2193: Uncharacteri 71.4 7.6 0.00017 30.2 4.0 86 11-96 67-160 (499)
238 PRK13917 plasmid segregation p 71.2 18 0.00039 27.2 6.1 57 51-109 267-323 (344)
239 TIGR00824 EIIA-man PTS system, 71.2 13 0.00029 23.4 4.7 40 75-114 60-101 (116)
240 PF03602 Cons_hypoth95: Conser 69.9 8.7 0.00019 26.3 3.8 35 76-111 43-78 (183)
241 KOG4058 Uncharacterized conser 69.6 7.7 0.00017 26.4 3.4 34 74-108 71-104 (199)
242 PRK06847 hypothetical protein; 69.4 8.3 0.00018 28.7 4.0 33 76-108 4-36 (375)
243 PF03492 Methyltransf_7: SAM d 69.3 5.2 0.00011 30.1 2.8 37 73-109 14-66 (334)
244 cd06059 Tubulin The tubulin su 69.1 14 0.0003 28.2 5.2 38 64-101 80-122 (382)
245 PRK10742 putative methyltransf 68.3 18 0.00038 26.3 5.2 44 64-110 76-121 (250)
246 PF07091 FmrO: Ribosomal RNA m 68.1 7.9 0.00017 28.1 3.4 33 75-107 105-137 (251)
247 cd00286 Tubulin_FtsZ Tubulin/F 68.0 15 0.00033 27.2 5.1 36 65-100 81-121 (328)
248 TIGR00027 mthyl_TIGR00027 meth 67.6 17 0.00036 26.3 5.1 37 75-113 81-118 (260)
249 PRK06475 salicylate hydroxylas 67.3 8.1 0.00018 29.2 3.6 33 77-109 3-35 (400)
250 PF07992 Pyr_redox_2: Pyridine 67.0 6.7 0.00014 26.2 2.8 30 78-107 1-30 (201)
251 PF00549 Ligase_CoA: CoA-ligas 66.7 10 0.00023 25.4 3.6 33 75-107 35-81 (153)
252 PRK08163 salicylate hydroxylas 66.1 8.7 0.00019 28.8 3.5 32 77-108 5-36 (396)
253 COG0500 SmtA SAM-dependent met 64.8 14 0.0003 22.2 3.8 28 79-107 52-80 (257)
254 PRK07236 hypothetical protein; 64.5 10 0.00022 28.5 3.6 32 77-108 7-38 (386)
255 PRK09273 hypothetical protein; 64.5 5.1 0.00011 28.4 1.8 35 79-114 66-101 (211)
256 PRK13512 coenzyme A disulfide 64.1 11 0.00024 29.1 3.8 32 77-108 2-35 (438)
257 cd02188 gamma_tubulin Gamma-tu 64.1 16 0.00034 28.6 4.6 34 67-100 124-162 (431)
258 KOG0822 Protein kinase inhibit 62.8 24 0.00051 28.8 5.3 54 37-97 334-389 (649)
259 PRK09126 hypothetical protein; 62.1 11 0.00023 28.2 3.4 31 78-108 5-35 (392)
260 PRK11031 guanosine pentaphosph 61.7 7.1 0.00015 31.0 2.4 14 73-86 130-143 (496)
261 PF02502 LacAB_rpiB: Ribose/Ga 61.6 5.3 0.00011 26.4 1.4 34 82-115 62-95 (140)
262 PRK06912 acoL dihydrolipoamide 60.8 12 0.00026 29.1 3.5 31 78-108 2-32 (458)
263 KOG1800 Ferredoxin/adrenodoxin 60.2 13 0.00029 29.0 3.5 34 74-107 18-53 (468)
264 PF13450 NAD_binding_8: NAD(P) 60.1 8.9 0.00019 21.7 2.1 27 82-109 2-29 (68)
265 TIGR03739 PRTRC_D PRTRC system 60.0 43 0.00094 24.8 6.2 35 75-109 273-307 (320)
266 KOG2352 Predicted spermine/spe 59.9 3.5 7.5E-05 32.7 0.4 72 43-117 266-338 (482)
267 PF05958 tRNA_U5-meth_tr: tRNA 59.9 6.3 0.00014 29.8 1.8 47 65-114 188-234 (352)
268 COG1233 Phytoene dehydrogenase 59.8 12 0.00026 29.5 3.3 34 77-110 4-37 (487)
269 PRK07045 putative monooxygenas 59.7 13 0.00028 27.9 3.5 33 77-109 6-38 (388)
270 PRK07538 hypothetical protein; 59.4 13 0.00028 28.2 3.4 32 78-109 2-33 (413)
271 PF01494 FAD_binding_3: FAD bi 59.3 10 0.00022 27.4 2.7 32 78-109 3-34 (356)
272 PLN02927 antheraxanthin epoxid 59.2 14 0.00029 30.7 3.6 33 75-107 80-112 (668)
273 PHA01634 hypothetical protein 59.0 10 0.00022 25.1 2.3 22 75-96 28-49 (156)
274 COG3897 Predicted methyltransf 58.8 24 0.00053 25.0 4.3 25 73-97 77-101 (218)
275 PRK07588 hypothetical protein; 58.8 13 0.00028 27.9 3.3 30 78-107 2-31 (391)
276 PF02541 Ppx-GppA: Ppx/GppA ph 58.8 9.7 0.00021 27.6 2.5 13 74-86 111-123 (285)
277 PF05577 Peptidase_S28: Serine 58.7 18 0.00038 27.9 4.1 27 74-100 110-137 (434)
278 PRK06753 hypothetical protein; 58.5 15 0.00032 27.3 3.6 31 78-108 2-32 (373)
279 PRK07608 ubiquinone biosynthes 57.8 14 0.00031 27.6 3.3 32 78-109 7-38 (388)
280 PRK04176 ribulose-1,5-biphosph 57.5 22 0.00047 25.6 4.1 30 79-108 28-57 (257)
281 PF05891 Methyltransf_PK: AdoM 57.4 6.7 0.00015 27.9 1.4 23 75-97 55-77 (218)
282 PRK10854 exopolyphosphatase; P 57.0 8.2 0.00018 30.7 2.0 12 75-86 137-148 (513)
283 TIGR02364 dha_pts dihydroxyace 56.9 16 0.00034 23.6 3.0 39 74-113 60-101 (125)
284 PLN00220 tubulin beta chain; P 56.8 26 0.00057 27.4 4.8 36 66-101 123-163 (447)
285 PF00091 Tubulin: Tubulin/FtsZ 56.6 29 0.00063 24.1 4.6 36 67-102 118-158 (216)
286 PTZ00387 epsilon tubulin; Prov 55.8 29 0.00062 27.5 4.8 36 65-100 123-163 (465)
287 COG1064 AdhP Zn-dependent alco 55.8 8.1 0.00018 29.3 1.7 35 78-114 171-206 (339)
288 TIGR02032 GG-red-SF geranylger 55.7 17 0.00037 25.6 3.4 30 79-108 3-32 (295)
289 PTZ00318 NADH dehydrogenase-li 55.6 17 0.00037 27.9 3.5 32 76-107 10-41 (424)
290 PTZ00383 malate:quinone oxidor 55.5 15 0.00033 29.2 3.3 33 77-109 46-80 (497)
291 TIGR01988 Ubi-OHases Ubiquinon 55.4 17 0.00037 26.9 3.4 31 79-109 2-32 (385)
292 PRK09564 coenzyme A disulfide 55.4 21 0.00045 27.4 3.9 31 78-108 2-34 (444)
293 COG5023 Tubulin [Cytoskeleton] 55.2 17 0.00037 28.2 3.3 35 66-100 123-162 (443)
294 PF14314 Methyltrans_Mon: Viru 55.0 38 0.00082 28.2 5.5 39 62-102 311-349 (675)
295 TIGR01984 UbiH 2-polyprenyl-6- 54.8 18 0.00038 27.0 3.4 30 79-108 2-32 (382)
296 PF12242 Eno-Rase_NADH_b: NAD( 54.7 23 0.0005 21.0 3.2 37 73-109 36-76 (78)
297 PRK05868 hypothetical protein; 54.5 18 0.0004 27.2 3.5 31 78-108 3-33 (372)
298 PRK08849 2-octaprenyl-3-methyl 54.4 16 0.00035 27.4 3.2 30 78-107 5-34 (384)
299 TIGR00689 rpiB_lacA_lacB sugar 54.4 11 0.00024 25.0 2.0 34 82-115 61-94 (144)
300 PRK06617 2-octaprenyl-6-methox 54.4 17 0.00037 27.2 3.3 31 78-108 3-33 (374)
301 TIGR02360 pbenz_hydroxyl 4-hyd 54.3 18 0.00038 27.4 3.4 33 77-109 3-35 (390)
302 TIGR01120 rpiB ribose 5-phosph 54.1 11 0.00024 24.9 2.0 34 82-115 62-95 (143)
303 TIGR03219 salicylate_mono sali 53.5 19 0.00042 27.3 3.5 31 78-108 2-33 (414)
304 KOG2915 tRNA(1-methyladenosine 53.5 50 0.0011 24.7 5.4 59 49-108 76-139 (314)
305 TIGR03439 methyl_EasF probable 53.4 44 0.00096 25.1 5.3 42 64-108 68-113 (319)
306 PRK06370 mercuric reductase; V 53.3 19 0.00041 27.9 3.5 30 79-108 8-37 (463)
307 PRK07251 pyridine nucleotide-d 53.3 19 0.00041 27.7 3.5 30 79-108 6-35 (438)
308 TIGR02734 crtI_fam phytoene de 53.3 15 0.00032 28.8 2.9 31 79-109 1-31 (502)
309 TIGR02053 MerA mercuric reduct 53.3 18 0.0004 28.0 3.4 29 79-107 3-31 (463)
310 PRK08020 ubiF 2-octaprenyl-3-m 53.2 22 0.00048 26.6 3.8 32 77-108 6-37 (391)
311 PRK08850 2-octaprenyl-6-methox 53.1 17 0.00037 27.5 3.2 30 78-107 6-35 (405)
312 cd02189 delta_tubulin The tubu 52.8 33 0.0007 26.9 4.7 36 66-101 119-159 (446)
313 PRK05714 2-octaprenyl-3-methyl 52.7 19 0.00041 27.2 3.3 31 78-108 4-34 (405)
314 KOG3987 Uncharacterized conser 52.2 8.2 0.00018 27.7 1.2 26 73-98 109-135 (288)
315 PF04820 Trp_halogenase: Trypt 52.1 18 0.00039 28.3 3.2 32 78-109 1-35 (454)
316 COG0116 Predicted N6-adenine-s 52.1 24 0.00051 27.3 3.7 36 63-99 180-215 (381)
317 cd08283 FDH_like_1 Glutathione 52.0 40 0.00086 25.4 5.0 42 73-114 182-225 (386)
318 PF06792 UPF0261: Uncharacteri 51.9 41 0.00089 26.2 5.0 45 53-98 72-117 (403)
319 COG4820 EutJ Ethanolamine util 51.8 9.7 0.00021 27.2 1.5 11 76-86 141-151 (277)
320 PRK05571 ribose-5-phosphate is 51.8 13 0.00028 24.8 2.1 34 82-115 64-97 (148)
321 cd02187 beta_tubulin The tubul 51.6 33 0.00073 26.7 4.6 35 67-101 123-162 (425)
322 TIGR01826 CofD_related conserv 51.5 17 0.00038 27.2 2.9 28 79-106 1-32 (310)
323 KOG1331 Predicted methyltransf 51.4 21 0.00046 26.5 3.2 55 50-108 17-74 (293)
324 PRK08013 oxidoreductase; Provi 51.3 21 0.00045 27.0 3.4 30 78-107 5-34 (400)
325 COG0391 Uncharacterized conser 51.2 24 0.00052 26.6 3.6 29 74-102 5-36 (323)
326 KOG4300 Predicted methyltransf 51.0 29 0.00063 24.9 3.7 29 75-107 76-107 (252)
327 PRK13606 LPPG:FO 2-phospho-L-l 51.0 24 0.00051 26.4 3.5 20 78-97 2-23 (303)
328 cd02186 alpha_tubulin The tubu 50.6 33 0.00072 26.8 4.4 35 67-101 125-164 (434)
329 TIGR03143 AhpF_homolog putativ 50.6 20 0.00043 28.8 3.2 31 78-108 6-36 (555)
330 TIGR01320 mal_quin_oxido malat 50.4 22 0.00047 28.1 3.4 30 79-108 3-34 (483)
331 KOG3851 Sulfide:quinone oxidor 50.2 28 0.00062 26.7 3.8 32 75-106 38-71 (446)
332 cd07187 YvcK_like family of mo 50.1 18 0.0004 27.0 2.8 28 79-106 1-32 (308)
333 PRK08243 4-hydroxybenzoate 3-m 49.6 25 0.00054 26.5 3.5 32 77-108 3-34 (392)
334 TIGR02733 desat_CrtD C-3',4' d 49.3 23 0.0005 27.6 3.4 32 78-109 3-34 (492)
335 COG4567 Response regulator con 49.1 84 0.0018 21.5 7.0 66 41-106 15-88 (182)
336 TIGR03140 AhpF alkyl hydropero 49.0 22 0.00047 28.2 3.2 30 77-106 213-242 (515)
337 TIGR01424 gluta_reduc_2 glutat 49.0 26 0.00056 27.1 3.6 30 79-108 5-34 (446)
338 PRK07364 2-octaprenyl-6-methox 48.7 25 0.00054 26.5 3.4 32 77-108 19-50 (415)
339 PRK07494 2-octaprenyl-6-methox 48.5 25 0.00055 26.2 3.4 31 78-108 9-39 (388)
340 PF12831 FAD_oxidored: FAD dep 48.4 17 0.00036 28.1 2.5 30 79-108 2-31 (428)
341 COG1063 Tdh Threonine dehydrog 47.7 23 0.0005 26.6 3.1 39 78-116 171-211 (350)
342 KOG2183 Prolylcarboxypeptidase 47.6 14 0.0003 29.1 1.9 27 75-101 165-192 (492)
343 PRK06116 glutathione reductase 47.5 25 0.00055 27.1 3.4 30 79-108 7-36 (450)
344 KOG2920 Predicted methyltransf 47.5 18 0.00039 26.8 2.4 33 75-108 116-148 (282)
345 PLN00222 tubulin gamma chain; 47.5 41 0.00089 26.5 4.5 34 67-100 126-164 (454)
346 PF03610 EIIA-man: PTS system 47.4 9.7 0.00021 23.7 0.9 47 68-114 52-100 (116)
347 COG1232 HemY Protoporphyrinoge 47.3 31 0.00066 27.2 3.8 30 78-107 2-33 (444)
348 cd07044 CofD_YvcK Family of Co 47.3 21 0.00046 26.7 2.8 24 79-102 1-26 (309)
349 COG2265 TrmA SAM-dependent met 47.2 10 0.00023 29.6 1.2 42 73-115 291-332 (432)
350 PRK06185 hypothetical protein; 46.9 26 0.00056 26.4 3.3 31 78-108 8-38 (407)
351 PRK05976 dihydrolipoamide dehy 46.8 27 0.00058 27.2 3.4 30 79-108 7-36 (472)
352 PRK06126 hypothetical protein; 46.8 27 0.00058 27.7 3.5 32 77-108 8-39 (545)
353 TIGR01989 COQ6 Ubiquinone bios 46.5 27 0.00059 26.9 3.4 29 79-107 3-35 (437)
354 PRK07818 dihydrolipoamide dehy 46.3 28 0.0006 27.1 3.4 29 79-107 7-35 (466)
355 TIGR03706 exo_poly_only exopol 46.1 21 0.00047 26.2 2.7 11 77-87 127-137 (300)
356 TIGR01421 gluta_reduc_1 glutat 45.4 27 0.00059 27.1 3.2 30 79-108 5-34 (450)
357 KOG2614 Kynurenine 3-monooxyge 45.4 29 0.00063 27.1 3.3 32 77-108 3-34 (420)
358 PTZ00335 tubulin alpha chain; 45.3 42 0.00091 26.4 4.3 36 66-101 125-165 (448)
359 PRK08773 2-octaprenyl-3-methyl 45.2 33 0.00072 25.7 3.6 31 78-108 8-38 (392)
360 PRK08010 pyridine nucleotide-d 44.9 31 0.00067 26.5 3.5 30 79-108 6-35 (441)
361 PLN00221 tubulin alpha chain; 44.8 42 0.00091 26.4 4.2 36 65-100 124-164 (450)
362 COG0698 RpiB Ribose 5-phosphat 44.7 20 0.00043 24.1 2.0 34 82-116 64-98 (151)
363 PLN02661 Putative thiazole syn 44.6 44 0.00095 25.6 4.1 32 77-108 93-125 (357)
364 PRK12615 galactose-6-phosphate 44.6 20 0.00044 24.5 2.1 34 82-115 63-96 (171)
365 PRK11728 hydroxyglutarate oxid 44.3 33 0.00071 25.9 3.5 31 79-109 5-37 (393)
366 PRK06292 dihydrolipoamide dehy 44.2 30 0.00066 26.7 3.4 29 79-107 6-34 (460)
367 PRK06115 dihydrolipoamide dehy 44.2 31 0.00068 26.9 3.4 29 79-107 6-34 (466)
368 KOG1501 Arginine N-methyltrans 44.1 22 0.00047 28.4 2.5 31 75-106 66-96 (636)
369 TIGR01423 trypano_reduc trypan 44.1 29 0.00062 27.4 3.2 29 79-107 6-35 (486)
370 COG4076 Predicted RNA methylas 44.1 37 0.0008 24.1 3.4 38 77-116 34-72 (252)
371 PF05971 Methyltransf_10: Prot 44.0 14 0.00031 27.5 1.4 39 76-115 103-143 (299)
372 PLN02546 glutathione reductase 43.7 31 0.00066 27.9 3.4 30 79-108 82-111 (558)
373 TIGR03169 Nterm_to_SelD pyridi 43.6 30 0.00065 25.7 3.2 30 78-107 1-33 (364)
374 PRK12837 3-ketosteroid-delta-1 43.0 41 0.00089 26.7 3.9 36 73-109 4-39 (513)
375 PRK06327 dihydrolipoamide dehy 42.5 35 0.00075 26.7 3.4 29 79-107 7-35 (475)
376 PTZ00215 ribose 5-phosphate is 42.5 23 0.0005 23.7 2.1 34 82-115 67-100 (151)
377 PRK06467 dihydrolipoamide dehy 42.4 34 0.00074 26.7 3.4 30 79-108 7-36 (471)
378 PRK09424 pntA NAD(P) transhydr 41.9 35 0.00075 27.4 3.4 40 76-116 165-206 (509)
379 PRK10611 chemotaxis methyltran 41.9 37 0.0008 25.1 3.3 41 76-116 116-165 (287)
380 PRK06184 hypothetical protein; 41.9 36 0.00078 26.7 3.5 30 78-107 5-34 (502)
381 PRK02399 hypothetical protein; 41.8 74 0.0016 24.9 5.0 45 53-98 74-119 (406)
382 KOG2782 Putative SAM dependent 41.8 33 0.00071 24.9 2.9 37 75-111 43-79 (303)
383 PRK05732 2-octaprenyl-6-methox 41.7 35 0.00077 25.4 3.3 30 78-107 5-37 (395)
384 PLN02463 lycopene beta cyclase 41.5 32 0.0007 26.9 3.1 30 78-107 30-59 (447)
385 cd06060 misato Human Misato sh 41.1 40 0.00086 27.0 3.6 38 64-101 142-183 (493)
386 PF02784 Orn_Arg_deC_N: Pyrido 41.1 14 0.0003 26.2 1.0 12 77-88 197-208 (251)
387 KOG1276 Protoporphyrinogen oxi 40.9 46 0.001 26.4 3.8 32 76-107 11-44 (491)
388 TIGR02730 carot_isom carotene 40.9 35 0.00075 26.7 3.2 32 79-110 3-34 (493)
389 PF01358 PARP_regulatory: Poly 40.8 27 0.00059 26.0 2.5 33 75-107 58-94 (294)
390 TIGR01119 lacB galactose-6-pho 40.6 24 0.00051 24.2 2.0 34 82-115 63-96 (171)
391 KOG1335 Dihydrolipoamide dehyd 40.6 43 0.00093 26.4 3.5 29 79-107 42-70 (506)
392 KOG1447 GTP-specific succinyl- 40.6 34 0.00073 25.6 2.9 33 75-107 308-344 (412)
393 TIGR01292 TRX_reduct thioredox 40.6 40 0.00086 23.9 3.3 30 79-108 3-32 (300)
394 cd06353 PBP1_BmpA_Med_like Per 40.5 41 0.00089 24.0 3.3 33 75-107 57-89 (258)
395 PRK11883 protoporphyrinogen ox 40.3 43 0.00093 25.4 3.6 30 78-107 2-33 (451)
396 TIGR00292 thiazole biosynthesi 40.2 56 0.0012 23.5 4.0 31 79-109 24-54 (254)
397 PTZ00153 lipoamide dehydrogena 40.1 38 0.00083 28.0 3.4 29 79-107 119-147 (659)
398 COG1155 NtpA Archaeal/vacuolar 40.1 35 0.00075 27.7 3.1 29 73-101 247-276 (588)
399 PRK08244 hypothetical protein; 40.0 36 0.00078 26.6 3.2 30 78-107 4-33 (493)
400 PRK06416 dihydrolipoamide dehy 40.0 47 0.001 25.7 3.8 31 79-109 7-37 (462)
401 PRK04965 NADH:flavorubredoxin 39.7 43 0.00092 25.1 3.5 30 78-107 4-35 (377)
402 PF02608 Bmp: Basic membrane p 39.7 33 0.00072 25.2 2.8 33 75-107 61-93 (306)
403 PRK05249 soluble pyridine nucl 39.6 40 0.00087 26.0 3.4 29 79-107 8-36 (461)
404 PRK14694 putative mercuric red 39.4 42 0.00091 26.1 3.5 31 78-108 8-38 (468)
405 KOG2182 Hydrolytic enzymes of 39.4 1.8E+02 0.0039 23.5 6.9 34 67-101 163-197 (514)
406 PRK09754 phenylpropionate diox 39.2 43 0.00093 25.4 3.5 31 77-107 4-36 (396)
407 TIGR01350 lipoamide_DH dihydro 39.2 42 0.00092 25.9 3.5 30 79-108 4-33 (461)
408 PRK08622 galactose-6-phosphate 39.2 25 0.00055 24.1 2.0 33 82-115 63-96 (171)
409 COG1252 Ndh NADH dehydrogenase 39.1 47 0.001 25.9 3.6 32 76-107 3-36 (405)
410 cd07186 CofD_like LPPG:FO 2-ph 38.9 36 0.00077 25.5 2.8 20 79-98 1-22 (303)
411 PRK05257 malate:quinone oxidor 38.9 37 0.00079 27.0 3.1 32 78-109 7-40 (494)
412 PRK07846 mycothione reductase; 38.8 38 0.00081 26.4 3.1 28 79-108 4-31 (451)
413 PRK11445 putative oxidoreducta 38.6 40 0.00086 25.1 3.1 30 79-109 4-33 (351)
414 KOG1562 Spermidine synthase [A 38.5 12 0.00026 28.1 0.3 41 75-116 121-163 (337)
415 KOG2336 Molybdopterin biosynth 38.5 49 0.0011 24.9 3.5 33 77-110 85-117 (422)
416 PRK13748 putative mercuric red 38.4 42 0.00092 26.6 3.4 31 78-108 100-130 (561)
417 PRK08233 hypothetical protein; 38.3 33 0.00072 22.5 2.5 22 85-106 15-36 (182)
418 TIGR02028 ChlP geranylgeranyl 38.2 44 0.00095 25.5 3.4 31 78-108 2-32 (398)
419 PRK10262 thioredoxin reductase 38.1 46 0.001 24.3 3.4 32 76-107 6-37 (321)
420 COG0654 UbiH 2-polyprenyl-6-me 38.0 43 0.00092 25.3 3.3 32 77-108 3-34 (387)
421 COG2159 Predicted metal-depend 37.9 72 0.0016 23.5 4.3 33 75-107 157-200 (293)
422 PRK15317 alkyl hydroperoxide r 37.7 40 0.00087 26.7 3.2 30 77-106 212-241 (517)
423 PTZ00052 thioredoxin reductase 37.6 45 0.00097 26.4 3.4 29 79-107 8-36 (499)
424 KOG3456 NADH:ubiquinone oxidor 37.6 59 0.0013 20.6 3.2 56 47-110 48-104 (120)
425 PRK07333 2-octaprenyl-6-methox 37.5 50 0.0011 24.7 3.5 30 79-108 4-35 (403)
426 PRK13339 malate:quinone oxidor 37.3 42 0.00091 26.8 3.2 33 78-110 8-43 (497)
427 PF01739 CheR: CheR methyltran 37.3 32 0.0007 23.8 2.3 42 75-116 31-82 (196)
428 cd06829 PLPDE_III_CANSDC Type 37.2 18 0.00039 27.1 1.1 12 77-88 189-200 (346)
429 PTZ00058 glutathione reductase 37.1 41 0.0009 27.2 3.2 29 79-107 51-79 (561)
430 PRK06183 mhpA 3-(3-hydroxyphen 37.1 46 0.001 26.4 3.4 32 77-108 11-42 (538)
431 PF11144 DUF2920: Protein of u 37.1 1E+02 0.0022 24.1 5.1 43 66-108 173-216 (403)
432 PRK08132 FAD-dependent oxidore 36.3 47 0.001 26.4 3.4 32 77-108 24-55 (547)
433 TIGR02023 BchP-ChlP geranylger 36.3 48 0.0011 24.9 3.3 30 79-108 3-32 (388)
434 PRK14727 putative mercuric red 36.1 50 0.0011 25.9 3.4 31 78-108 18-48 (479)
435 KOG3924 Putative protein methy 36.0 43 0.00094 26.2 3.0 38 73-110 190-230 (419)
436 COG1077 MreB Actin-like ATPase 35.8 21 0.00045 27.1 1.2 12 75-86 153-164 (342)
437 PLN02507 glutathione reductase 35.8 50 0.0011 26.1 3.4 29 79-107 28-56 (499)
438 PF08557 Lipid_DES: Sphingolip 35.7 15 0.00031 18.9 0.3 10 92-101 21-30 (39)
439 TIGR01118 lacA galactose-6-pho 35.6 26 0.00055 23.2 1.5 32 84-115 63-94 (141)
440 cd06836 PLPDE_III_ODC_DapDC_li 35.2 21 0.00046 27.1 1.2 12 77-88 208-219 (379)
441 PRK08255 salicylyl-CoA 5-hydro 35.1 46 0.001 27.9 3.2 32 78-109 2-35 (765)
442 KOG1663 O-methyltransferase [S 35.0 93 0.002 22.5 4.3 36 74-109 72-108 (237)
443 TIGR01790 carotene-cycl lycope 34.9 51 0.0011 24.6 3.2 29 79-107 2-30 (388)
444 PF12757 DUF3812: Protein of u 34.8 19 0.00041 23.2 0.8 11 75-85 56-66 (126)
445 KOG3988 Protein-tyrosine sulfo 34.5 48 0.001 25.0 2.9 30 73-102 66-98 (378)
446 PLN00093 geranylgeranyl diphos 34.4 54 0.0012 25.7 3.3 32 77-108 40-71 (450)
447 PRK08294 phenol 2-monooxygenas 34.0 57 0.0012 26.8 3.5 32 76-107 32-64 (634)
448 PLN00124 succinyl-CoA ligase [ 33.9 77 0.0017 24.8 4.1 32 75-106 317-352 (422)
449 cd06841 PLPDE_III_MccE_like Ty 33.8 22 0.00049 26.8 1.2 12 77-88 204-215 (379)
450 TIGR01813 flavo_cyto_c flavocy 33.8 58 0.0013 24.9 3.5 31 79-109 2-33 (439)
451 PRK08274 tricarballylate dehyd 33.7 53 0.0012 25.4 3.2 30 79-108 7-36 (466)
452 PRK06834 hypothetical protein; 33.5 55 0.0012 25.8 3.3 31 78-108 5-35 (488)
453 PRK07843 3-ketosteroid-delta-1 33.4 64 0.0014 25.9 3.7 32 77-108 8-39 (557)
454 KOG1352 Vacuolar H+-ATPase V1 33.4 59 0.0013 25.8 3.3 32 73-104 268-300 (618)
455 PRK05354 arginine decarboxylas 33.1 58 0.0012 27.0 3.4 12 77-88 284-295 (634)
456 PLN02697 lycopene epsilon cycl 33.0 53 0.0011 26.4 3.1 30 78-107 110-139 (529)
457 TIGR01047 nspC carboxynorsperm 32.9 25 0.00054 26.8 1.3 13 76-88 192-204 (380)
458 KOG1098 Putative SAM-dependent 32.9 93 0.002 26.1 4.4 46 65-110 34-80 (780)
459 PRK11475 DNA-binding transcrip 32.8 1.7E+02 0.0036 20.3 5.3 26 80-105 46-74 (207)
460 PRK07845 flavoprotein disulfid 32.7 60 0.0013 25.3 3.4 32 77-108 2-33 (466)
461 PF09949 DUF2183: Uncharacteri 32.7 1.2E+02 0.0027 18.6 4.6 39 62-101 54-92 (100)
462 PRK12835 3-ketosteroid-delta-1 32.7 64 0.0014 26.2 3.6 37 73-109 8-44 (584)
463 PF03486 HI0933_like: HI0933-l 32.6 41 0.00089 26.1 2.4 31 79-109 3-33 (409)
464 TIGR03452 mycothione_red mycot 32.6 49 0.0011 25.7 2.9 28 79-108 5-32 (452)
465 PF07101 DUF1363: Protein of u 32.3 21 0.00045 22.2 0.6 29 79-107 6-39 (124)
466 PF00890 FAD_binding_2: FAD bi 32.2 47 0.001 25.1 2.7 32 79-110 2-33 (417)
467 PLN02172 flavin-containing mon 32.2 67 0.0015 25.3 3.6 33 76-108 10-42 (461)
468 cd06830 PLPDE_III_ADC Type III 32.1 24 0.00052 27.2 1.1 12 77-88 225-236 (409)
469 PRK10015 oxidoreductase; Provi 32.1 62 0.0013 25.0 3.3 30 79-108 8-37 (429)
470 TIGR03315 Se_ygfK putative sel 32.1 65 0.0014 28.3 3.7 32 76-107 537-568 (1012)
471 PF01933 UPF0052: Uncharacteri 31.9 22 0.00048 26.5 0.8 18 79-96 1-20 (300)
472 PF00175 NAD_binding_1: Oxidor 31.7 49 0.0011 19.7 2.3 9 91-99 46-54 (109)
473 TIGR01316 gltA glutamate synth 31.7 76 0.0017 24.6 3.8 32 76-107 133-164 (449)
474 PTZ00010 tubulin beta chain; P 31.6 99 0.0022 24.3 4.4 34 67-100 124-162 (445)
475 PRK12613 galactose-6-phosphate 31.6 33 0.00071 22.7 1.5 30 84-114 62-92 (141)
476 cd06831 PLPDE_III_ODC_like_AZI 31.5 26 0.00057 26.9 1.2 11 77-87 204-214 (394)
477 PTZ00367 squalene epoxidase; P 31.4 59 0.0013 26.4 3.2 31 77-107 34-64 (567)
478 PRK07057 sdhA succinate dehydr 31.2 57 0.0012 26.5 3.1 30 79-108 15-44 (591)
479 PRK10100 DNA-binding transcrip 31.1 89 0.0019 21.8 3.7 32 76-107 54-89 (216)
480 PF01266 DAO: FAD dependent ox 30.4 57 0.0012 23.4 2.8 31 79-109 2-32 (358)
481 TIGR01273 speA arginine decarb 30.3 69 0.0015 26.4 3.4 12 77-88 277-288 (624)
482 COG0742 N6-adenine-specific me 30.2 64 0.0014 22.4 2.8 31 76-107 44-74 (187)
483 PRK06481 fumarate reductase fl 30.2 77 0.0017 25.1 3.7 33 77-109 62-94 (506)
484 TIGR01372 soxA sarcosine oxida 30.2 62 0.0013 28.1 3.3 31 77-107 164-194 (985)
485 PLN02439 arginine decarboxylas 30.1 71 0.0015 26.0 3.4 12 77-88 221-232 (559)
486 PRK07233 hypothetical protein; 30.1 68 0.0015 24.1 3.2 32 78-109 1-32 (434)
487 TIGR01812 sdhA_frdA_Gneg succi 30.0 62 0.0014 25.9 3.1 31 79-109 2-32 (566)
488 PF05762 VWA_CoxE: VWA domain 29.8 79 0.0017 22.1 3.3 33 75-107 59-98 (222)
489 KOG4716 Thioredoxin reductase 29.8 82 0.0018 24.6 3.5 29 79-107 22-50 (503)
490 PRK11749 dihydropyrimidine deh 29.8 78 0.0017 24.6 3.6 33 76-108 140-172 (457)
491 PRK12810 gltD glutamate syntha 29.7 87 0.0019 24.5 3.8 33 76-108 143-175 (471)
492 PRK06153 hypothetical protein; 29.6 96 0.0021 24.2 3.9 31 77-107 177-208 (393)
493 PF14881 Tubulin_3: Tubulin do 29.5 85 0.0018 21.5 3.4 40 63-102 64-107 (180)
494 PRK12831 putative oxidoreducta 29.5 88 0.0019 24.5 3.8 33 75-107 139-171 (464)
495 KOG0023 Alcohol dehydrogenase, 29.3 66 0.0014 24.6 2.9 31 77-109 185-215 (360)
496 PRK12842 putative succinate de 29.3 63 0.0014 26.0 3.1 33 77-109 10-42 (574)
497 cd06840 PLPDE_III_Bif_AspK_Dap 29.2 29 0.00064 26.2 1.1 12 77-88 206-217 (368)
498 PRK15411 rcsA colanic acid cap 29.2 1.1E+02 0.0024 21.0 3.9 30 76-105 49-83 (207)
499 cd06843 PLPDE_III_PvsE_like Ty 29.2 29 0.00063 26.2 1.1 13 76-88 204-216 (377)
500 KOG2078 tRNA modification enzy 29.1 26 0.00057 27.7 0.8 38 73-112 247-285 (495)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.95 E-value=4.8e-28 Score=171.97 Aligned_cols=110 Identities=35% Similarity=0.593 Sum_probs=99.5
Q ss_pred cccCcchhhccCchHHHHhcCCchhhhccCCCcccccccCchHHHHHHHHHHhcchhhH-HHHHHhcCCCCCCceEEEec
Q 043449 5 ASREINVVWGRYHLKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITM-KKFLENYKGFEGLKSVVDVG 83 (118)
Q Consensus 5 ~~~~~~~~~~w~~L~~~vr~g~~~f~~~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~-~~~~~~~~~~~~~~~vvDvG 83 (118)
...++..+++|.+|.+++|+|+++|+.++|.++|+|++++|+..+.|+.+|...++... +.+.+.++ |++..+|||||
T Consensus 30 ~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvG 108 (241)
T PF00891_consen 30 FMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVG 108 (241)
T ss_dssp HHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET
T ss_pred HhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEecc
Confidence 34678899999999999999999999999999999999999999999999999998877 77889999 99999999999
Q ss_pred CCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 84 GGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 84 Gg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
||+|+++.+++++||++++|++|+|+|++.++
T Consensus 109 GG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~ 140 (241)
T PF00891_consen 109 GGSGHFAIALARAYPNLRATVFDLPEVIEQAK 140 (241)
T ss_dssp -TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHH
T ss_pred CcchHHHHHHHHHCCCCcceeeccHhhhhccc
Confidence 99999999999999999999999999998764
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.82 E-value=2e-20 Score=137.52 Aligned_cols=115 Identities=50% Similarity=0.753 Sum_probs=108.3
Q ss_pred cccccCcchhhccCchHHHHhcCCchhhhccCCCcccccccCchHHHHHHHHHHhcchhhHHHHHHhcCCCCCCceEEEe
Q 043449 3 LLASREINVVWGRYHLKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDV 82 (118)
Q Consensus 3 ~~~~~~~~~~~~w~~L~~~vr~g~~~f~~~~g~~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDv 82 (118)
++..+++..++.|.+|.++|+.|+.+|..++|+.+|+|...++.....|+++|...+....+.+++.|.+|+...+.|||
T Consensus 105 ~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDv 184 (342)
T KOG3178|consen 105 VLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDV 184 (342)
T ss_pred HHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEc
Confidence 45667889999999999999999999999999889999999999999999999999999888899999889999999999
Q ss_pred cCCCcHHHHHHHHHCCCCcEEEeechHHhhhCCCC
Q 043449 83 GGGIGASLNMIISKYPSIKGINFDLPHVIQDAPAY 117 (118)
Q Consensus 83 GGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~ 117 (118)
|||.|..+..++..||+++++.||+|.|++.++.+
T Consensus 185 GgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~ 219 (342)
T KOG3178|consen 185 GGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL 219 (342)
T ss_pred CCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh
Confidence 99999999999999999999999999999998865
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.53 E-value=3e-14 Score=104.47 Aligned_cols=96 Identities=22% Similarity=0.370 Sum_probs=70.5
Q ss_pred hccCchHHHHhcCCchhhhccCCCcccccccCchHHHHHHHHHHh-cchhhHHHHHHhcCCCCCCceEEEecCCCcHHHH
Q 043449 13 WGRYHLKDAVLEGGIPFNMAYGMNTYEYHGKDPRYNKIFNNGMFS-HSTITMKKFLENYKGFEGLKSVVDVGGGIGASLN 91 (118)
Q Consensus 13 ~~w~~L~~~vr~g~~~f~~~~g~~~~e~~~~~p~~~~~F~~~M~~-~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~ 91 (118)
..|.+|.+++|+ +++|...+ ++.+..++. ..|...|.. ......+.+++..+ +++..+|+|||||+|.+++
T Consensus 94 ~~~~~l~~~~r~-~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~ 165 (306)
T TIGR02716 94 DFYMGLSQAVRG-QKNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISA 165 (306)
T ss_pred HHHHhHHHHhcC-Cccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHH
Confidence 568999999984 44454322 222233333 345555543 33444566778888 8888999999999999999
Q ss_pred HHHHHCCCCcEEEeechHHhhhCCC
Q 043449 92 MIISKYPSIKGINFDLPHVIQDAPA 116 (118)
Q Consensus 92 ~l~~~~P~l~~~v~Dlp~vi~~a~~ 116 (118)
++++++|+++++++|+|++++.+++
T Consensus 166 ~~~~~~p~~~~~~~D~~~~~~~a~~ 190 (306)
T TIGR02716 166 AMLKHFPELDSTILNLPGAIDLVNE 190 (306)
T ss_pred HHHHHCCCCEEEEEecHHHHHHHHH
Confidence 9999999999999999999987653
No 4
>PRK06922 hypothetical protein; Provisional
Probab=98.65 E-value=6.2e-08 Score=77.38 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=61.9
Q ss_pred CCcccccccCchHHHHHHHHHHhcchhh--HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeech-HHh
Q 043449 35 MNTYEYHGKDPRYNKIFNNGMFSHSTIT--MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP-HVI 111 (118)
Q Consensus 35 ~~~~e~~~~~p~~~~~F~~~M~~~~~~~--~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp-~vi 111 (118)
..+|+++..+++..++|...|....... .......++ +....+|+|||||+|.++..+++++|+.+++.+|+. .++
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 4678999999988899988876644332 112233456 667789999999999999999999999999999995 456
Q ss_pred hhCC
Q 043449 112 QDAP 115 (118)
Q Consensus 112 ~~a~ 115 (118)
+.|+
T Consensus 456 e~Ar 459 (677)
T PRK06922 456 DTLK 459 (677)
T ss_pred HHHH
Confidence 6654
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.45 E-value=1.6e-07 Score=58.66 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=36.8
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+|||||+|.++..+++.+|..+++.+|. |.+++.+++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARE 43 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 46899999999999999999999999999998 888877653
No 6
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.40 E-value=5.6e-07 Score=61.62 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=47.3
Q ss_pred HHHH-HHhcchhhHHH-HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 51 FNNG-MFSHSTITMKK-FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 51 F~~~-M~~~~~~~~~~-~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
|.++ |...+...... ++...+ .....+|+|||||+|.++..+++++|+.+++.+|. |..++.++
T Consensus 6 f~~~~~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~ 72 (187)
T PRK08287 6 FLRGEKVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK 72 (187)
T ss_pred hccCCCCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 4443 44444433333 334455 66678999999999999999999999999999999 77777664
No 7
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.34 E-value=2.5e-06 Score=61.14 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=44.2
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+++.++ .....+|+|||||+|.++..+++++|+.+++..|+ |..++.|++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence 34666666 66678999999999999999999999999999999 788877654
No 8
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.19 E-value=5.9e-06 Score=59.08 Aligned_cols=53 Identities=25% Similarity=0.523 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+++.++ ..+..+|+|||||+|.++..+++++|..+++..|+ |..++.+++
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~ 73 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARS 73 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 345666666 66778999999999999999999999999999998 677776653
No 9
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.14 E-value=6.1e-06 Score=52.06 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=38.8
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
+.+.++ .....+|+|+|+|.|.++..+++++|+.+++.+|. +..++.+
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a 59 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLI 59 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHH
Confidence 444455 55567999999999999999999999999999998 5655554
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.08 E-value=1.1e-05 Score=57.02 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=48.3
Q ss_pred hcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 57 SHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..++. +..++...+ ......|+|+|||.|....-|++++|....+.+|- |++++.|++
T Consensus 14 eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~ 72 (257)
T COG4106 14 ERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ 72 (257)
T ss_pred hccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH
Confidence 34443 345677777 77889999999999999999999999999999996 888887754
No 11
>PRK04457 spermidine synthase; Provisional
Probab=98.08 E-value=3.7e-06 Score=60.82 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=38.8
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+..+|+|||+|.|.++..+++.+|+.+++++|+ |++++.|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~ 108 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARN 108 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999 999998765
No 12
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.06 E-value=7.7e-06 Score=62.09 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=40.2
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
-+++.++ .....+|+|+|||+|.++..+++++|+.+++..|. +..++.|+
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3555565 43346899999999999999999999999999998 46666554
No 13
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.05 E-value=7.3e-06 Score=56.52 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+.+.++ .....+|+|+|||+|.++..+++..|..+++.+|+ |..++.+++
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 445555 56678999999999999999999999999999998 888776643
No 14
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.6e-05 Score=58.42 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=41.5
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.-+++.++ .....+|+|+|||.|.+++.+++.+|+.+.+..|. ...++.|++
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~ 200 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARK 200 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHH
Confidence 34667777 55556999999999999999999999999999997 445555543
No 15
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.97 E-value=2.3e-06 Score=52.50 Aligned_cols=37 Identities=24% Similarity=0.566 Sum_probs=31.4
Q ss_pred EEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 80 VDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 80 vDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+|||||+|.++..+++++|..+.+..|. |..++.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~ 38 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARE 38 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCC
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999999998 788877765
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.96 E-value=1.1e-05 Score=53.36 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=35.1
Q ss_pred CCceEEEecCCCcHHHHHHH-HHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMII-SKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+..+|+|+|||+|.++..++ +.+|..+++.+|+ |..++.|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~ 46 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK 46 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc
Confidence 45789999999999999999 5689999999998 777776643
No 17
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.96 E-value=1e-05 Score=57.41 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=36.9
Q ss_pred CCCceEEEecCCCcHHHHHHHHH--CCCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISK--YPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
....+|+|||||+|.++..++++ +|+.+++.+|+ |.+++.|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~ 97 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQ 97 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHH
Confidence 34578999999999999999997 58899999999 888877653
No 18
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.94 E-value=2.9e-05 Score=54.33 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=50.6
Q ss_pred cccccccCchHHHHHHHHHHhcchhhHHHHHHhcCC-CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 37 TYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKG-FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 37 ~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.|+.+..++.....+...|..........+++..+. .....+|+|||||+|.++..+++. ..+++.+|. |..++.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 566666665556666666643333333334433331 234689999999999999999886 447888897 7777665
Q ss_pred C
Q 043449 115 P 115 (118)
Q Consensus 115 ~ 115 (118)
+
T Consensus 94 ~ 94 (219)
T TIGR02021 94 R 94 (219)
T ss_pred H
Confidence 4
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.94 E-value=2.5e-05 Score=53.97 Aligned_cols=41 Identities=27% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
...+|+|||||+|..+..++++.|..+++..|. +..++.|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~ 86 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR 86 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH
Confidence 367899999999999999999999999999998 66666554
No 20
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.91 E-value=1.5e-05 Score=55.08 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
...+++|||||+|.++..+++++|+..++.+|+ +..++.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a 56 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAA 56 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHH
Confidence 457899999999999999999999999999998 6666655
No 21
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.90 E-value=2.5e-05 Score=54.50 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=37.7
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
....+|+|||||+|..+..+++..|..+++..|+ |..++.|++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~ 85 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKA 85 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHh
Confidence 3567899999999999999999989999999997 778887764
No 22
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.89 E-value=1.4e-05 Score=57.13 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCceEEEecCCCcHHHHHHHH--HCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIIS--KYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~--~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+|+|||||+|..+..+++ .+|+.+++.+|. |..++.|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~ 100 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRR 100 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHH
Confidence 457899999999999999988 469999999998 888887653
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.88 E-value=2.9e-05 Score=54.55 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=39.8
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~ 115 (118)
.++..++ .....+|+|||||+|.++..+++.. |+.+++.+|+ |..++.++
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3445555 5566899999999999999999886 7789999998 67766554
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.86 E-value=1e-05 Score=54.80 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=35.6
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
...+++|+|+|+|.++..+++++|+.+++..|. |..++.++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK 72 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 468899999999999999999999999999997 66665543
No 25
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.85 E-value=3e-05 Score=53.95 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
...+|+|||||+|..+..+++.+|+.+++..|. |+.++.++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~ 81 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHH
Confidence 467899999999999999999999999999998 66776553
No 26
>PRK06202 hypothetical protein; Provisional
Probab=97.81 E-value=8.8e-05 Score=52.35 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCCceEEEecCCCcHHHHHHHHH----CCCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISK----YPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+..+|+|||||+|.++..+++. .|+.+++..|+ |..++.|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~ 106 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARA 106 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHh
Confidence 45679999999999999888764 46789999998 888877654
No 27
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.79 E-value=4.6e-05 Score=57.17 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=38.5
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+++.++ -....+|+|+|||+|.++..+++++|+.+++..|. +..++.++
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~ 237 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSR 237 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 344454 33346899999999999999999999999999998 55666554
No 28
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.78 E-value=0.00013 Score=52.01 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcch------hhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 48 NKIFNNGMFSHST------ITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 48 ~~~F~~~M~~~~~------~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+.|+++...+.. ..+..+++.++ .....+|+|+|||+|.++..+.+. ..+++..|+ |..++.+++
T Consensus 10 ~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~ 82 (251)
T PRK10258 10 AAAFGRAAAHYEQHAELQRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQ 82 (251)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHh
Confidence 3456555544332 22334555555 445688999999999999888764 468899998 777776653
No 29
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.78 E-value=2.3e-05 Score=53.74 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=33.5
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
..+|+|||||+|.++..+++.+|+.+++.+|. |..++.+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a 82 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFL 82 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHH
Confidence 57899999999999999999999999999998 4455443
No 30
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=1.9e-05 Score=57.72 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=35.5
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+|+|+|+|+|..+++++++.|+.+++..|+ |..++.|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~ 152 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE 152 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH
Confidence 799999999999999999999999999998 777776653
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.75 E-value=5.2e-05 Score=52.49 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+.+++.++ .....+|+|+|||.|..+..++++ ..+++.+|+ |..++.++
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~ 69 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLE 69 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 345666666 555689999999999999999986 468899998 66666554
No 32
>PRK08317 hypothetical protein; Provisional
Probab=97.71 E-value=8.8e-05 Score=51.67 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=38.7
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a 114 (118)
+++.++ .....+|+|+|||+|.++..+++.+ |..+++..|+ |..++.+
T Consensus 11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a 60 (241)
T PRK08317 11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA 60 (241)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence 445555 6667899999999999999999998 7889999998 5555544
No 33
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.69 E-value=0.0001 Score=53.59 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+++.++ .....+|+|||||+|.++..++++.+ +++.+|. |..++.++
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHH
Confidence 34555555 66667899999999999999999987 6777776 66666553
No 34
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.68 E-value=0.00012 Score=55.72 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
....+||||||+|.++..+++++|+..++..|+ +..++.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a 162 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQV 162 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHH
Confidence 456899999999999999999999999999997 5555543
No 35
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.68 E-value=7e-05 Score=51.61 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=37.8
Q ss_pred HhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 68 ENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 68 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
..+. ..+..+++|||+|+|+++++.+..+|+.|++.+|. ++.++..
T Consensus 28 s~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~ 74 (187)
T COG2242 28 SKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELI 74 (187)
T ss_pred HhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHH
Confidence 3344 55678999999999999999999999999999997 5555543
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.68 E-value=3.5e-05 Score=47.48 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=28.8
Q ss_pred EEEecCCCcHHHHHHHHHC---CCCcEEEeec-hHHhhhCC
Q 043449 79 VVDVGGGIGASLNMIISKY---PSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~---P~l~~~v~Dl-p~vi~~a~ 115 (118)
|+|+|||+|..+..+++.+ |+.+.+..|+ |..++.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~ 41 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK 41 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH
Confidence 7999999999999999997 6689999997 67776554
No 37
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.67 E-value=0.00013 Score=52.28 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=33.0
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
...+|+|||||+|.++..+++. ..+++..|+ |..++.|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~ 83 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAK 83 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 4579999999999999999987 467899998 77877664
No 38
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.67 E-value=3.4e-05 Score=57.07 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=36.2
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+|+|+|||+|.++..+++.+|+.+++..|+ |..++.|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~ 175 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI 175 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999999999999 888876653
No 39
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.66 E-value=4.7e-05 Score=55.70 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=36.4
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+|+|||+|.++..+++.+|+.+++..|. |..++.|++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999998 777776653
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.64 E-value=6.2e-05 Score=52.64 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=32.3
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.+|+|||||.|.++..+++.+|+.+++.+|+ |..++.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a 39 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVG 39 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 3799999999999999999999999999998 4554443
No 41
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.63 E-value=0.00014 Score=50.82 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=38.5
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~ 115 (118)
+++.+. .....+|+|||||.|.++..+++..| +.+++.+|+ |..++.++
T Consensus 43 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 93 (239)
T PRK00216 43 TIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGR 93 (239)
T ss_pred HHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Confidence 444444 44567999999999999999999998 789999998 55655543
No 42
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.62 E-value=0.00011 Score=49.50 Aligned_cols=47 Identities=15% Similarity=0.352 Sum_probs=36.6
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.+++.++ ..+..+++|||+|.|.++..++++ ..+++..|. |..++.+
T Consensus 4 ~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~ 51 (169)
T smart00650 4 KIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRL 51 (169)
T ss_pred HHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHH
Confidence 4566666 666789999999999999999998 467888887 4555544
No 43
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.61 E-value=0.0001 Score=53.02 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=36.4
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+|+|||+|.++..+++..|..+++..|. |..++.|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~ 128 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARR 128 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 45899999999999999999999999999998 888877653
No 44
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.59 E-value=9.1e-05 Score=53.01 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+|+|||||+|-++..+++..+..+++..|. +.+++.|++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~ 93 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE 93 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999998 777777654
No 45
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.59 E-value=6.5e-05 Score=57.74 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=37.2
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+..+|+|+|||+|.++..+++++|+.+++..|. |..++.|++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Are 293 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARK 293 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999 888877654
No 46
>PLN02366 spermidine synthase
Probab=97.58 E-value=8.7e-05 Score=54.99 Aligned_cols=42 Identities=29% Similarity=0.265 Sum_probs=34.8
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCC-CcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPS-IKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~ 116 (118)
.+..+|++||||.|..+.++++. |. .++++.|+ |.|++.+++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~ 133 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKK 133 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHH
Confidence 45789999999999999999865 65 57899998 668888766
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.55 E-value=0.00011 Score=51.19 Aligned_cols=39 Identities=26% Similarity=0.512 Sum_probs=33.4
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
..+|+|||||+|.++..+++..|+.+++..|. |..++.+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 74 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA 74 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH
Confidence 47899999999999999999999999999998 4555443
No 48
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.55 E-value=0.00014 Score=50.21 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=36.4
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.+.+.++ .....+|+|||||+|..+..++++ ..+++.+|. |..++.+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a 68 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASV 68 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHH
Confidence 4555555 444679999999999999999985 468899998 6666654
No 49
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.53 E-value=0.00019 Score=51.84 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
...+++.++ .....+|+|||||+|..+..+++.+ ..+++..|+ |..++.++
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~ 92 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAK 92 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHH
Confidence 345666666 7777899999999999999998876 678999998 66666554
No 50
>PLN02244 tocopherol O-methyltransferase
Probab=97.52 E-value=0.0002 Score=53.55 Aligned_cols=40 Identities=35% Similarity=0.471 Sum_probs=33.2
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
....+|+|||||+|.++..+++++ +.+++.+|+ |..++.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a 157 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARA 157 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHH
Confidence 456789999999999999999988 778999998 5555544
No 51
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.52 E-value=7.9e-05 Score=58.60 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=36.3
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+|||||+|.+++.+++++|+.+++..|. |..++.|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~ 180 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS 180 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 35899999999999999999999999999998 777776653
No 52
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.51 E-value=7.8e-05 Score=54.40 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=35.6
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+|+|+|||+|.++..+++..|+.+++..|. |..++.|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999999999998 777766543
No 53
>PRK05785 hypothetical protein; Provisional
Probab=97.50 E-value=0.00015 Score=51.38 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=34.5
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+|||||+|.++..+++++ +.+++..|. |+.++.|++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHh
Confidence 5799999999999999999987 578999998 777777653
No 54
>PRK00811 spermidine synthase; Provisional
Probab=97.49 E-value=0.0001 Score=53.86 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=35.9
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+..+|+|||||.|..+..+++..+.-++++.|+ |.+++.|++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~ 118 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRK 118 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHH
Confidence 3568899999999999999997645567999998 888888765
No 55
>PRK01581 speE spermidine synthase; Validated
Probab=97.48 E-value=0.00014 Score=55.01 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=36.2
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+..+|++||||.|..+.++++..+..++++.|+ |.|++.|++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 3467999999999999999997555568999998 888998875
No 56
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.48 E-value=0.00025 Score=49.06 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCC-CcEEEeec-hHHhhhC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPS-IKGINFDL-PHVIQDA 114 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a 114 (118)
+++... .....+|+|+|||.|..+..+++++|. .+++..|. |..++.+
T Consensus 31 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~ 80 (223)
T TIGR01934 31 AVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVA 80 (223)
T ss_pred HHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 344444 445689999999999999999999998 78999998 5665554
No 57
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.45 E-value=0.00013 Score=51.70 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=35.2
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+|+|+|||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~ 128 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR 128 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 45899999999999999999999999999997 77776554
No 58
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.45 E-value=0.00028 Score=50.97 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~ 115 (118)
.....+|+|||||+|.++..+++.+ |+.+++.+|. |..++.|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~ 115 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA 115 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 4456799999999999999999885 6789999998 77777654
No 59
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.43 E-value=0.0003 Score=50.57 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+..+|+|+|||+|.++..+++..|..+++..|. |..++.++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~ 149 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVAR 149 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999997 56665544
No 60
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.41 E-value=0.00038 Score=48.67 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~ 115 (118)
.+++.++ .....+|+|||||+|.++..+++..+ +.+++..|. |+.++.|+
T Consensus 68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~ 119 (215)
T TIGR00080 68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119 (215)
T ss_pred HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 4555566 66678999999999999999999865 467888886 77777664
No 61
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.40 E-value=0.00025 Score=52.25 Aligned_cols=40 Identities=10% Similarity=0.330 Sum_probs=33.4
Q ss_pred CCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a 114 (118)
...+|||+|||+|..+..|+++.+ ..+.+.+|+ ++.++.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a 104 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKES 104 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHH
Confidence 346899999999999999999988 688999998 4555544
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.39 E-value=0.00034 Score=54.30 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=37.7
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+++.++ .....+|+|||||+|..+..+++.+ +.+++.+|+ |..++.|+
T Consensus 258 l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~ 306 (475)
T PLN02336 258 FVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFAL 306 (475)
T ss_pred HHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHH
Confidence 445555 5566799999999999999998876 779999998 56666553
No 63
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.39 E-value=0.00023 Score=51.20 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=36.4
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.....+|+|+|+|.|.++..++++.+..+.+.+|+ +...+.|+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~ 85 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ 85 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHH
Confidence 44589999999999999999999999999999998 44555554
No 64
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.00036 Score=51.08 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhh
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQD 113 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~ 113 (118)
...+++.+. +....+|+|||||-|.+++-.+++| +++++..++ ++-.+.
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~ 110 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAY 110 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHH
Confidence 345677787 8889999999999999999999999 999988887 444433
No 65
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.38 E-value=0.00028 Score=44.16 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=33.0
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+|+|+|+|+|.++.++++.. ..+++.+|+ |..++.++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~ 40 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELAR 40 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHH
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHH
Confidence 479999999999999999999 888999998 76666554
No 66
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.38 E-value=0.00037 Score=53.09 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=37.8
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+++.++ .....+|+|||||.|.++..+++.+ +.+++..|+ |..++.|+
T Consensus 159 l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~ 207 (383)
T PRK11705 159 ICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQ 207 (383)
T ss_pred HHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 445555 5667899999999999999998876 678999998 66666654
No 67
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.34 E-value=0.00043 Score=47.82 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=37.5
Q ss_pred hcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhCC
Q 043449 69 NYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 69 ~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+ .....+|+|+|+|+|.++..+++.. |..+++.+|. |..++.++
T Consensus 35 ~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 35 KLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 345 5667899999999999999998874 6788999998 77777654
No 68
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.33 E-value=0.0002 Score=51.04 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~ 115 (118)
.....+|+|||||+|.++..++++. |+.+++..|. |..++.|+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~ 89 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVAR 89 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHH
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHH
Confidence 4456799999999999999999875 6789999998 77777764
No 69
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.32 E-value=0.00056 Score=47.46 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=31.0
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhh
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQ 112 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~ 112 (118)
...+||||||.|.++.++++++|+...+..|. +..+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~ 55 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVA 55 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHH
Confidence 35999999999999999999999999999996 44433
No 70
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.32 E-value=0.00034 Score=52.53 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=36.0
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+|+|||||+|.++..+++.+|..+++..|+ |..++.|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~ 155 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999889999998 677776643
No 71
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.31 E-value=0.00057 Score=49.01 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
..+++..+ ..+..+|+|||+|+|.++..++++.+. ++.+|. +..++.+
T Consensus 19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l 67 (253)
T TIGR00755 19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEIL 67 (253)
T ss_pred HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHH
Confidence 44566666 667789999999999999999999975 666665 4444443
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.29 E-value=0.00067 Score=47.20 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~ 115 (118)
+++..+ .....+|+|||||+|..+..+++..+ ..+++.+|. |..++.|+
T Consensus 64 ~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~ 114 (205)
T PRK13944 64 MCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA 114 (205)
T ss_pred HHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 444444 45567999999999999999998875 557888887 66666554
No 73
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.28 E-value=0.00046 Score=48.23 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
....+|+|||||+|.++..++++.+ +++..|+ |..++.|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~ 102 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEAR 102 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHH
Confidence 4467999999999999999998764 4888897 66666654
No 74
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.27 E-value=0.0016 Score=47.19 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=33.6
Q ss_pred CCceEEEecCCCcH----HHHHHHHHCC-----CCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGA----SLNMIISKYP-----SIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~----~~~~l~~~~P-----~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+|+|+|||+|. +++.+++..| +.+++..|+ |.+++.|++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 45689999999996 5667777765 478899998 788888775
No 75
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.27 E-value=0.00037 Score=50.46 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCC---cEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSI---KGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l---~~~v~Dl-p~vi~~a~ 115 (118)
...+|+|||||+|.++..+++..|.. +++..|+ |..++.|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~ 129 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA 129 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH
Confidence 45789999999999999999998864 5789998 66666654
No 76
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.26 E-value=0.00033 Score=47.53 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+..+|+|+|||+|.++..+++..+ +++..|+ |..++.++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~ 58 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELR 58 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHH
Confidence 346899999999999999999887 7888897 77776654
No 77
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.26 E-value=0.00076 Score=47.23 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+++.++ .....+|+|||+|+|.++..+++.. ++.+++.+|. |+.++.++
T Consensus 67 ~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~ 118 (212)
T PRK13942 67 IMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK 118 (212)
T ss_pred HHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 3555566 6777899999999999998888875 4568888886 77776654
No 78
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.26 E-value=0.00066 Score=48.90 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
...+++..+ .....+|+|||||.|.++..++++. .+++.+|+ +..++.+
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l 67 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFL 67 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHH
Confidence 344555555 5566899999999999999999984 46788887 4555544
No 79
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.22 E-value=0.00053 Score=50.08 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=34.9
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
++..++ .....+|+|||||+|..+..+++. ..+++.+|. |..++.+
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~ 158 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENL 158 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 444444 334569999999999999999885 578999998 6666654
No 80
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.22 E-value=0.00037 Score=45.24 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=31.9
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
+++|||+|.|.++..+++.+|..+++.+|. |...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l 38 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEIL 38 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHH
Confidence 589999999999999999999999999996 5555543
No 81
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.21 E-value=0.002 Score=42.17 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=29.0
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHh
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVI 111 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi 111 (118)
....+|+|||||.|.++..+.+... +++..|. |..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~ 57 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMI 57 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHH
Confidence 4578999999999999999966644 8889997 4444
No 82
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.21 E-value=0.00041 Score=45.54 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=32.7
Q ss_pred CCCceEEEecCCCcHHHHHHHHH----CCCCcEEEeec-hHHhhhC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISK----YPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~a 114 (118)
.+..+|||+|+|.|.++..++.. .|+++++..|. ++.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a 69 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESA 69 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHH
Confidence 56789999999999999999982 38899999996 4444443
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.17 E-value=0.00032 Score=50.22 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+|+|||||+|.+++.+++..+. +++..|. |..++.|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~ 160 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARE 160 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHH
Confidence 4679999999999999987776544 6888998 667766543
No 84
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.15 E-value=0.00025 Score=52.26 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=42.1
Q ss_pred HHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 50 IFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 50 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.|..+-+..++..... ++.+. . +..+|+|||||+|.++++.++.-. -+++.+|. |..++.|+
T Consensus 139 AFGTG~H~TT~lcl~~-l~~~~-~-~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLEL-LEKYV-K-PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp SS-SSHCHHHHHHHHH-HHHHS-S-TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHH
T ss_pred cccCCCCHHHHHHHHH-HHHhc-c-CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHH
Confidence 4776666666665543 34444 3 346999999999999999888744 36888887 66666654
No 85
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.14 E-value=0.00038 Score=50.96 Aligned_cols=62 Identities=24% Similarity=0.445 Sum_probs=40.5
Q ss_pred HHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 50 IFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 50 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.|..+....++.... +++.+. . ...+|+|||||+|.++.++++. +.-+++..|. |..++.|+
T Consensus 137 aFgtG~h~tt~l~l~-~l~~~~-~-~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~ 199 (288)
T TIGR00406 137 AFGTGTHPTTSLCLE-WLEDLD-L-KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESAR 199 (288)
T ss_pred cccCCCCHHHHHHHH-HHHhhc-C-CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence 365555444443322 333343 2 3479999999999999988765 4458899998 56666554
No 86
>PHA03411 putative methyltransferase; Provisional
Probab=97.14 E-value=0.00059 Score=49.88 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=35.2
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+|+|||+|.++..++++.+..+++..|+ |..++.+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~ 106 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKR 106 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 46899999999999999999988889999998 777776543
No 87
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.12 E-value=0.00053 Score=49.63 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=36.3
Q ss_pred CceEEEecCCCcHHHHHHHHHCCC------CcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPS------IKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~------l~~~v~Dl-p~vi~~a~~ 116 (118)
..+++||+||+|-.+..|++.-++ -+++|.|. |+.++.+++
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq 148 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ 148 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH
Confidence 478999999999999999999988 78999998 888877654
No 88
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.11 E-value=0.00045 Score=41.12 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=28.5
Q ss_pred EEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 80 VDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 80 vDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+|||+|.|..+..++++ +..+++..|. +..++.++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~ 36 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQAR 36 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH
Confidence 79999999999999999 9999999997 44455543
No 89
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.11 E-value=0.00092 Score=48.76 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..+++..+ .....+|+|||||-|.++..++++| +++++...+
T Consensus 52 ~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 52 DLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITL 93 (273)
T ss_dssp HHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEEC
Confidence 34566666 7778899999999999999999999 788888876
No 90
>PRK03612 spermidine synthase; Provisional
Probab=97.10 E-value=0.00078 Score=53.23 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=36.6
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCC-CcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPS-IKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~ 116 (118)
.+.++|+|||||+|..+.++++ +|. -++++.|+ |++++.+++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELART 339 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHh
Confidence 3568899999999999999996 676 68999998 999998876
No 91
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.07 E-value=0.0015 Score=48.21 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+++.+. -.....+||.++|.|..+.+++++.| +.+++.+|. |+.++.|++
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~ 62 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKD 62 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHH
Confidence 34556554 44557999999999999999999996 789999998 888877653
No 92
>PLN02672 methionine S-methyltransferase
Probab=97.05 E-value=0.00048 Score=58.44 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=35.2
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+|+|||+|+|.+++.+++++|+.+++..|+ |..++.|+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 5899999999999999999999999999998 77777664
No 93
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.04 E-value=0.0022 Score=43.81 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=32.6
Q ss_pred HhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeechH
Q 043449 68 ENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDLPH 109 (118)
Q Consensus 68 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dlp~ 109 (118)
+.+.......+|+|+|+|+|.++..+++++ +..+++..|+-+
T Consensus 25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~ 67 (188)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67 (188)
T ss_pred HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence 334434567899999999999999999887 567788888743
No 94
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.02 E-value=0.0019 Score=48.17 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=28.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
...+|+|||||+|.++..+++..|. +++.+|.-
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S 154 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPS 154 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCC
Confidence 3579999999999999999999876 48999963
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=97.00 E-value=0.001 Score=44.87 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=32.7
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.+..+|+|+|||+|.++..+++. ..+++.+|+ |.+++.+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a 61 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECA 61 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHH
Confidence 34578999999999999999998 578899998 6677665
No 96
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.00082 Score=48.36 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=42.3
Q ss_pred HHHHhcC-CCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 65 KFLENYK-GFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 65 ~~~~~~~-~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+..++ .|-+...++||||..|.++..+++.+-..+.+..|. |..|+.|++
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark 100 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK 100 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence 3444443 266778999999999999999999999999999998 666777764
No 97
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.00 E-value=0.00074 Score=48.96 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=34.9
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+..+|++||||.|.++..+++..+..++++.|+ |.+++.+++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~ 114 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKK 114 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHH
Confidence 3456999999999999999998766677888888 677776654
No 98
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.99 E-value=0.0022 Score=44.89 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=33.1
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeechH
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDLPH 109 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dlp~ 109 (118)
+.+.|..+....+|+|||||+|.++..++++. |..+++..|+-+
T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 33444424556789999999999999999986 456788888643
No 99
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00094 Score=48.98 Aligned_cols=44 Identities=30% Similarity=0.488 Sum_probs=39.4
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPAY 117 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~ 117 (118)
++.++|+=||||.|..+.++++..+--++|+.|+ |.|++.++++
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~ 119 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKY 119 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHh
Confidence 3457999999999999999999999889999998 9999998764
No 100
>PRK04266 fibrillarin; Provisional
Probab=96.96 E-value=0.0026 Score=45.15 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=34.6
Q ss_pred cCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhh
Q 043449 70 YKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQ 112 (118)
Q Consensus 70 ~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~ 112 (118)
++ .....+|+|+|+|+|.++..+++..+.-+++.+|+ |..++
T Consensus 68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~ 110 (226)
T PRK04266 68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR 110 (226)
T ss_pred CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 45 56678999999999999999999998667899998 54443
No 101
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.95 E-value=0.00091 Score=49.75 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=31.6
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+|+|||||+|.++..+++. ..+++..|+ |..++.++
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~ 183 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAE 183 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 468999999999999999986 568999998 56666554
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=96.94 E-value=0.0017 Score=47.99 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCceEEEecCCCc--HHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIG--ASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G--~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+|+|||+|.| +.....++.+|+.+++.+|. |+.++.|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~ 167 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARR 167 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 5689999999988 44444456789999999998 777776654
No 103
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.94 E-value=0.0012 Score=49.22 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=30.9
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+|+|||||.|.++..+++ ++.+++..|. +..++.|+
T Consensus 132 g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar 170 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIAR 170 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHH
Confidence 35899999999999998876 4678899997 66666654
No 104
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.00057 Score=50.44 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=42.3
Q ss_pred HHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 50 IFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 50 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.|..+-+..++.... +++.+. .+..+++|||||+|-++++.++--. -+++..|. |..++.|++
T Consensus 140 AFGTG~HpTT~lcL~-~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 140 AFGTGTHPTTSLCLE-ALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARE 203 (300)
T ss_pred ccCCCCChhHHHHHH-HHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHH
Confidence 466555555554433 344454 2678999999999999999887643 35777777 666665543
No 105
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.91 E-value=0.0026 Score=47.32 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
...+|+|||||+|.++..+++..++ +++.+|.
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDp 152 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDP 152 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcC
Confidence 4579999999999999999988775 6888896
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.89 E-value=0.0013 Score=38.91 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=29.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech-HHhhh
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP-HVIQD 113 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~ 113 (118)
+++|+|+|.|.++..+++ .+..+.+..|+. ..++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~ 36 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALEL 36 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHH
Confidence 589999999999999998 778899999974 44443
No 107
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.89 E-value=0.0027 Score=49.31 Aligned_cols=49 Identities=27% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.+.+++.++ ..+..+|+|||||+|.++..+++... +++..|. |..++.+
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a 75 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKN 75 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHH
Confidence 445666666 44567999999999999999999864 5788886 5555543
No 108
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.87 E-value=0.0017 Score=46.87 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=35.3
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhCCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.....+|+|||||+|..+..+++.. |+.+++..|+ |..++.|++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 4556899999999999988777764 6678999998 777777653
No 109
>PHA03412 putative methyltransferase; Provisional
Probab=96.85 E-value=0.0011 Score=47.42 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=33.6
Q ss_pred CceEEEecCCCcHHHHHHHHHC---CCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKY---PSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~---P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|||+|+|+|.++..++++. +..+++.+|+ |..++.|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~ 94 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKR 94 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHh
Confidence 5799999999999999999885 4568899998 666666653
No 110
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.82 E-value=0.0013 Score=49.13 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=35.8
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+++|||+|+|.+...++.+.++.+++..|+ |..++.|++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~ 156 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQA 156 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Confidence 357899999999999999999999999999998 667776653
No 111
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.80 E-value=0.0039 Score=44.41 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.7
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
...+|+||+|.|.+..++++++|+.-++..+.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi 80 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEI 80 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEE
Confidence 36899999999999999999999999988886
No 112
>PLN02823 spermine synthase
Probab=96.77 E-value=0.0016 Score=48.81 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=36.6
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+.++|+-||||.|..+..+++..+.-++++.|+ |.|++.+++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~ 145 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRK 145 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 467899999999999999998766778999998 889998875
No 113
>PRK00536 speE spermidine synthase; Provisional
Probab=96.76 E-value=0.0014 Score=47.59 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=35.9
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+.++|+=||||.|..+.+++|. |. ++++.|+ +.|++.+++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFIS 112 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHH
Confidence 45789999999999999999987 55 9999998 889988876
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.76 E-value=0.0035 Score=46.78 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCC-CcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPS-IKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~ 115 (118)
+++..+ ..+..+|+|||+|+|.++..+++..+. -+++..|. |+.++.|+
T Consensus 72 ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar 122 (322)
T PRK13943 72 FMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK 122 (322)
T ss_pred HHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 444445 556689999999999999999998874 46777887 66665554
No 115
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.74 E-value=0.0016 Score=47.72 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=33.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeech-HHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP-HVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a 114 (118)
....++|+|+|+|+.+..+++.-|+.+++..|+- ..+..|
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLA 188 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHH
Confidence 3457999999999999999999999999999984 444433
No 116
>PRK14967 putative methyltransferase; Provisional
Probab=96.74 E-value=0.0024 Score=44.87 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=31.7
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.....+|+|+|||+|.++..+++. +..+++..|+ |..++.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a 75 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSA 75 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHH
Confidence 444579999999999999998876 3457899998 5556544
No 117
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.72 E-value=0.0033 Score=46.37 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
..+++..+ .....+|+|||+|.|.++..++++.. +++.+|+ +..++.+
T Consensus 26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l 74 (294)
T PTZ00338 26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAEL 74 (294)
T ss_pred HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHH
Confidence 34555555 55667899999999999999999854 5677776 5555443
No 118
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.70 E-value=0.0027 Score=43.62 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=29.1
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
...+|+|||||+|.++..+++. ...+++..|. |+.++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLAC 52 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHH
Confidence 3468999999999999888765 4566777886 4444443
No 119
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.61 E-value=0.0033 Score=48.49 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
++...+ .....+|+|+|+|+|..+..+++..++.+++.+|. |..++.++
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~ 285 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR 285 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 334444 44567899999999999999999998888999997 66665543
No 120
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.61 E-value=0.002 Score=46.12 Aligned_cols=39 Identities=23% Similarity=0.097 Sum_probs=32.5
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+|||||-|.++..+++.- .+++-.|+ ++.|+.|+.
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ 99 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKL 99 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHH
Confidence 4789999999999999999997 77888887 666776653
No 121
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.53 E-value=0.0024 Score=49.39 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+++..+ .....+|+|+|||+|.++..+++.. .+++..|. |+.++.|+
T Consensus 289 vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~ 336 (443)
T PRK13168 289 ALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERAR 336 (443)
T ss_pred HHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHH
Confidence 334344 3445789999999999999999886 46788887 66776654
No 122
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.48 E-value=0.0045 Score=47.89 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=38.1
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~ 115 (118)
+...++ .....+|+|+|+|+|..+..+++.. |..+++.+|+ +..++.++
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~ 292 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE 292 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 334444 4556789999999999999999986 6789999998 66665543
No 123
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.46 E-value=0.0054 Score=42.59 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=26.1
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
...+|+|+|||.|.++..|.+. .++++.-.|+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEi 44 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEI 44 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEec
Confidence 4689999999999999877774 6887766665
No 124
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.42 E-value=0.0082 Score=41.73 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+++..+ .....+|+|||+|+|..+..+++... +++.+|. |..++.++
T Consensus 70 l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~ 117 (212)
T PRK00312 70 MTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAK 117 (212)
T ss_pred HHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHH
Confidence 344445 55678999999999999987777754 5666775 66655543
No 125
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.39 E-value=0.0087 Score=42.03 Aligned_cols=38 Identities=26% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
...+|+|||||.|.++..+++. ..+++..|. |..++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a 86 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVA 86 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHH
Confidence 4578999999999999998886 456888887 4444443
No 126
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.35 E-value=0.0019 Score=46.43 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=34.8
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+..+|+=||||.|..+.++++..+..++++.|+ |.|++.+++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~ 118 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARK 118 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHH
Confidence 578999999999999999987766778999998 888888765
No 127
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0042 Score=43.08 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+.++|+|+|||+|.++++.+-.-|+ +++.+|. |+.++.+++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~ 86 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARA 86 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHH
Confidence 3568999999999999998777655 5566666 777776654
No 128
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.30 E-value=0.007 Score=44.84 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=31.3
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+|+|+|||+|.++..+++. ..+++..|. |..++.|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHH
Confidence 478999999999999999984 467888887 77776654
No 129
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.22 E-value=0.0081 Score=40.79 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=30.9
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a 114 (118)
...+|+++|+|.|..++.+++..+..++++-|.+++++..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l 84 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELL 84 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHH
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHH
Confidence 4689999999999999999999888899999999877653
No 130
>PRK04148 hypothetical protein; Provisional
Probab=96.22 E-value=0.011 Score=38.77 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=33.1
Q ss_pred HHHhcCCCCCCceEEEecCCCcH-HHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGA-SLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+.+.++ -.+..+++|||.|.|. ++..+.+. ...++..|. |..++.++
T Consensus 8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~ 56 (134)
T PRK04148 8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK 56 (134)
T ss_pred HHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 445554 3345789999999996 77777754 568899997 66666543
No 131
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.12 E-value=0.02 Score=39.75 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
+.+.+..+ .-+..+++|+|||.|..+.-|+++ +..++.+|.-
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s 61 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDIS 61 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESS
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECC
Confidence 45667777 656789999999999999999998 7778888873
No 132
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.07 E-value=0.0076 Score=41.93 Aligned_cols=38 Identities=24% Similarity=0.077 Sum_probs=29.3
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
...+|+|+|||+|.++..+++..+ +++..|+ |.+++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a 83 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVA 83 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHH
Confidence 357899999999999999988754 4888887 4455443
No 133
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.07 E-value=0.019 Score=40.39 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=31.6
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhh
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQD 113 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~ 113 (118)
....+|+|+|||.|..+..|+++ ..++|.+|+ |..++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQ 71 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHH
Confidence 34579999999999999999875 778999998 555554
No 134
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.98 E-value=0.011 Score=41.22 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=29.6
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+|+|+|+|+|.++++.+.+.. .+++.+|. |..++.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHH
Confidence 46899999999999998666654 57888886 66665443
No 135
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.97 E-value=0.019 Score=40.92 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=35.4
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+.++|+|||+|+|.-+..+++..| +.+++-+|. |+.++.|++
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~ 111 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLE 111 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 34578999999999999999998865 678999997 566666543
No 136
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.93 E-value=0.0085 Score=41.32 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=30.4
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
..+|+|+++|+|.++.+++++... +++..|. +..++.+
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~ 88 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTL 88 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHH
Confidence 478999999999999999999764 6788887 5555443
No 137
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.87 E-value=0.032 Score=39.74 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHHHHhcCCC-CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 64 KKFLENYKGF-EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 64 ~~~~~~~~~~-~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
..+++.++ . -+..+++|||||+|.++..++++ +.-+++..|.-.
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~ 108 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGY 108 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCH
Confidence 34555554 3 24578999999999999999986 455788999743
No 138
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.86 E-value=0.014 Score=46.02 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
....+||||||.|.++.++++++|+..++..|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~ 379 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEV 379 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEe
Confidence 368899999999999999999999999988886
No 139
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.75 E-value=0.015 Score=44.78 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=37.7
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
++..++ .....+|+|+|+|+|..+..+++..|+.+++..|. +..++.+
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~ 278 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRV 278 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 344445 44567999999999999999999988778999997 6665544
No 140
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=95.74 E-value=0.0073 Score=43.90 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.+|+|||||.|-++..|++-- ..++..|. +..|+.|++
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~ 129 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANE 129 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHH
Confidence 679999999999999999986 55666776 667776654
No 141
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=95.71 E-value=0.016 Score=40.30 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=23.7
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..+|+|+|+|.|+++..|++.-=.-+.+-.|.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDY 99 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDY 99 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCcccccc
Confidence 34999999999999999998753333344453
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.70 E-value=0.011 Score=45.49 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+..+|+|+|||+|.++..+++... +++..|. |+.++.|++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~ 332 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQ 332 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHH
Confidence 45567899999999999999998753 6788887 777776653
No 143
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.0086 Score=40.14 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=34.0
Q ss_pred HhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc-EEEeec-hHHhhhCCC
Q 043449 68 ENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK-GINFDL-PHVIQDAPA 116 (118)
Q Consensus 68 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-p~vi~~a~~ 116 (118)
+-|+++ +..++.|+|||.|.++ ++-.+|..+ ++.||+ |+.++.+.+
T Consensus 42 ~Tygdi-Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 42 NTYGDI-EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTR 89 (185)
T ss_pred hhhccc-cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhh
Confidence 344423 3578999999999999 556778876 788998 777776543
No 144
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.67 E-value=0.023 Score=39.91 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=35.4
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~ 115 (118)
.+++.++ .....+|+|||+|+|..+.-+++..- .-+++-.|. |.+++.|+
T Consensus 63 ~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~ 114 (209)
T PF01135_consen 63 RMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERAR 114 (209)
T ss_dssp HHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred HHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence 4566777 77789999999999999999988754 345666664 77777664
No 145
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.65 E-value=0.019 Score=36.31 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
.....+||||||.|.+.--|.+. ..++..+|
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD 87 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGID 87 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCccccc
Confidence 45788999999999988777665 44555555
No 146
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=95.63 E-value=0.0098 Score=45.16 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=30.2
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+|+|++||+|.++..++.. ..+++..|. |..++.|+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~ 272 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQ 272 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHH
Confidence 468999999999999999864 457888886 66666554
No 147
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.62 E-value=0.015 Score=41.72 Aligned_cols=40 Identities=15% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeech-HHhhhC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP-HVIQDA 114 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a 114 (118)
...+++++|+|||+|-.+.+|...--.+. -+|+. .+++.|
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a~~lt--GvDiS~nMl~kA 163 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMADRLT--GVDISENMLAKA 163 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHHhhcc--CCchhHHHHHHH
Confidence 34589999999999999999988766554 45653 344444
No 148
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.62 E-value=0.037 Score=39.05 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=31.1
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhh
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQD 113 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~ 113 (118)
....+|+|+|||.|..+..|+++ ..++|.+|+ |..++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQ 74 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHH
Confidence 34579999999999999999874 778999998 454553
No 149
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.50 E-value=0.021 Score=38.66 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=35.5
Q ss_pred HHHHhcCCCC--CCceEEEecCCCcHHHHHHHHHC-CCCcEEEeechHH
Q 043449 65 KFLENYKGFE--GLKSVVDVGGGIGASLNMIISKY-PSIKGINFDLPHV 110 (118)
Q Consensus 65 ~~~~~~~~~~--~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dlp~v 110 (118)
++.+.|+-++ ...+++|+|+++|.++..++++. +..+++.+|+.+.
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4555665233 45899999999999999999998 7888999998654
No 150
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.41 E-value=0.028 Score=41.87 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.++.... +....+|+|+|||+|.++++.+. ...+++..|. |..++.++
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~ 221 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGAR 221 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHH
Confidence 3444445 66677999999999999988655 3677888898 66666543
No 151
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.31 E-value=0.057 Score=38.17 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=35.4
Q ss_pred cccccccCchHHHHHHHHHH----hcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 37 TYEYHGKDPRYNKIFNNGMF----SHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 37 ~~e~~~~~p~~~~~F~~~M~----~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
-++.+.++|+.-..++.+-. .+-......+++.+..-+....|.|.|||.+.++.++.+ ..++.-|||-
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLv 102 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLV 102 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeecc
Confidence 34556788876555554443 333333445555544233457899999999999977642 2456667763
No 152
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.23 E-value=0.028 Score=41.78 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=25.2
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
.++|+|||||.|.++..++++.|.. ++.+|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~-ViGiD 145 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKS-VIGID 145 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCE-EEEEC
Confidence 5799999999999999999997653 55566
No 153
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.20 E-value=0.01 Score=41.78 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=26.8
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..++|||||.|.++..|...||+--.+..++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehh
Confidence 6799999999999999999999976655553
No 154
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.02 E-value=0.028 Score=42.32 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+.++|+|||||+|-++.--+++. ..++..+|--++++.|+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~ 99 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFAR 99 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHH
Confidence 46899999999999999888887 66778888777766554
No 155
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.89 E-value=0.053 Score=39.15 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
+..+++..+ ..+...|+|||.|.|.++..|++.. -+.+++|.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~ 60 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEI 60 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEES
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecC
Confidence 455667677 7778999999999999999999998 44555554
No 156
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=94.83 E-value=0.07 Score=36.79 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=27.5
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
+++|||.|.|.=++-++=.+|++++++.|-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs 80 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVES 80 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeC
Confidence 799999999999999999999999999983
No 157
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.81 E-value=0.059 Score=38.13 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=29.4
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
..+++|||.|.|.=++-++=.+|++++++.|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLle 98 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLE 98 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEc
Confidence 5899999999999999999999999999998
No 158
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=94.77 E-value=0.015 Score=41.57 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=30.4
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
....|+|||||+|.-+.-+... ....+-.|. |++++.|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~ 89 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAV 89 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHH
Confidence 3688999999999877666554 467788897 88887764
No 159
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=94.72 E-value=0.022 Score=39.75 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=34.4
Q ss_pred hcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 69 NYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 69 ~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+ -..+.+++++|||.|.+...|+.+. -+.++.|. |..++.|++
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~ 83 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARE 83 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHH
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHH
Confidence 456 6678899999999999999999886 35788888 777777653
No 160
>PTZ00146 fibrillarin; Provisional
Probab=94.70 E-value=0.083 Score=39.07 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeech
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDLP 108 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dlp 108 (118)
.....+|+|+|+|+|.++..+++... .=+++.+|..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s 166 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS 166 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc
Confidence 45567999999999999999999873 4578888864
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.63 E-value=0.044 Score=41.38 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=29.8
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+|+|+++|+|.++..+++... +++..|. ++.++.|+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHH
Confidence 4699999999999999998874 6777786 66666554
No 162
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.58 E-value=0.095 Score=36.75 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=29.0
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHh
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVI 111 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi 111 (118)
+++.+. ..+..+++|||+|.|....+.+-.++--+++..++ |...
T Consensus 34 il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~ 79 (205)
T PF08123_consen 34 ILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH 79 (205)
T ss_dssp HHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH
T ss_pred HHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH
Confidence 445555 66678999999999999999888876555877775 4443
No 163
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.57 E-value=0.083 Score=38.52 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=34.2
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc-EEEeec-hHHhhh
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK-GINFDL-PHVIQD 113 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-p~vi~~ 113 (118)
+....++| ...+|+|+|+|.|+.+-+....+|++. .++.|. +..++.
T Consensus 25 l~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 25 LRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL 73 (274)
T ss_pred HHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence 33334423 357899999999999999999999664 678886 444443
No 164
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.54 E-value=0.069 Score=41.38 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=33.6
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhhC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a 114 (118)
.....+|+|+|+|+|..+..+++.. +.-+++..|+ +..++.+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~ 278 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLV 278 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHH
Confidence 4556789999999999999999886 5678999997 5555544
No 165
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=94.42 E-value=0.037 Score=41.88 Aligned_cols=37 Identities=8% Similarity=0.163 Sum_probs=29.3
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+|+|++||+|.++..+++... +++..|. +..++.++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHH
Confidence 4699999999999999998865 6777776 56665554
No 166
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.071 Score=37.56 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+++..+ .+...+|++||+|+|..+.-+++--- +++-.|+ +...+.|+
T Consensus 63 ~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~ 111 (209)
T COG2518 63 RMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQAR 111 (209)
T ss_pred HHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHH
Confidence 4566666 77889999999999999988887766 6555554 56665554
No 167
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.32 E-value=0.07 Score=37.44 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=25.9
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
+|+.||.|+|.-+..+++++|+++--=-|.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~ 57 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDP 57 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCC
Confidence 599999999999999999999997644443
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.28 E-value=0.12 Score=40.35 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=39.0
Q ss_pred cccccccCchHHHHHHHHHHhcchhhHHHHHHhcCCC---CCCceEEEecCCCcHHHHHHHHHC----CCCcEEEeec
Q 043449 37 TYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGF---EGLKSVVDVGGGIGASLNMIISKY----PSIKGINFDL 107 (118)
Q Consensus 37 ~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~---~~~~~vvDvGGg~G~~~~~l~~~~----P~l~~~v~Dl 107 (118)
.||.+++||..-+.+.+|+.. ++.+....- .+...|+|||+|+|-++...+++- -..++...+-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk 222 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK 222 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 477788888877777776522 222222201 135789999999999987776654 3456665554
No 169
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=94.25 E-value=0.15 Score=37.07 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
...+++..+ -.....|+.||.|.|++...|+++...+.++=.|
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD 61 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID 61 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC
Confidence 455666666 5557899999999999999999999887777776
No 170
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.07 E-value=0.088 Score=40.88 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=32.8
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~ 115 (118)
.....+|+|+|+|+|..+..+++..+ .-+++..|+ +..++.++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 292 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR 292 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence 33457899999999999999888764 457899997 55555443
No 171
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=94.04 E-value=0.084 Score=40.85 Aligned_cols=46 Identities=9% Similarity=-0.038 Sum_probs=34.8
Q ss_pred HhcCCCCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhC
Q 043449 68 ENYKGFEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDA 114 (118)
Q Consensus 68 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a 114 (118)
..++ .....+|+|+|+|+|..+..+++..+ .-+++..|. +..++.+
T Consensus 246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~ 293 (434)
T PRK14901 246 PLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKL 293 (434)
T ss_pred HHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence 3344 44567899999999999999999864 468899997 5555544
No 172
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=93.73 E-value=0.087 Score=39.01 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCC--CcEEEeec-hHHhhhC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPS--IKGINFDL-PHVIQDA 114 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~--l~~~v~Dl-p~vi~~a 114 (118)
....+||||.||+|.+....++.+|. .++.+.|. |.-++..
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g 177 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKG 177 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHH
Confidence 35689999999999999999999998 67888887 5445443
No 173
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.59 E-value=0.1 Score=37.64 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=34.1
Q ss_pred ceEEEecCCCcHHHHHHHHHCCC--CcEEEeec-hHHhhhCCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPS--IKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~--l~~~v~Dl-p~vi~~a~~ 116 (118)
.+|+.||||.|...--+++-+|+ ++....|- |..++..++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~ 115 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKK 115 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHh
Confidence 38999999999999999999999 88888886 667766544
No 174
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=93.58 E-value=0.076 Score=37.21 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=33.7
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~ 115 (118)
.+.++|++||.+.|.-++.++++.| +.+++-.|. |+..+.|+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~ 87 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR 87 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH
Confidence 3578999999999999999999987 578888887 55555543
No 175
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=93.54 E-value=0.14 Score=36.96 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=32.6
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCC-CcEEEeec-hHHhhhC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPS-IKGINFDL-PHVIQDA 114 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a 114 (118)
-....+|+|+|+|+|..+..+++..++ -+++..|. +..++.+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~ 112 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVL 112 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHH
Confidence 345578999999999999999988753 57888887 5555443
No 176
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.54 E-value=0.15 Score=39.19 Aligned_cols=41 Identities=39% Similarity=0.680 Sum_probs=34.4
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCC-cEEEeec-hHHhhhCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSI-KGINFDL-PHVIQDAP 115 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dl-p~vi~~a~ 115 (118)
.+..+++-+|||.|--+.+++ +||+. +.+..|| |.+|+.++
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhh
Confidence 356889999999999888876 57865 6899998 99999886
No 177
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=93.42 E-value=0.082 Score=40.63 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=30.4
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+..+|+|+|+|+|.++++.+.. ...+++.+|+ |..++.|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~ 260 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIAR 260 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence 4578999999999998876643 4457899997 66666554
No 178
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.27 E-value=0.059 Score=37.77 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=30.3
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
|+|||+-+|.+.+.|+++...-+++..|. |.-++.|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A 37 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKA 37 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999999999997 5555544
No 179
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=93.22 E-value=0.1 Score=37.60 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=29.6
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+.++|||+|+|..++.++..|.++ |.-|. +..++.|++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~V--IatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKEV--IATDVSEAMLKVAKK 73 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhhh--eeecCCHHHHHHhhc
Confidence 34599999999998888888876654 55565 666776655
No 180
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=93.11 E-value=0.096 Score=40.06 Aligned_cols=39 Identities=18% Similarity=0.032 Sum_probs=32.8
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.+|+|+++|+|.+++.+++..+..+++..|. |..++.++
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~ 98 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK 98 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 5799999999999999999888667899997 66666554
No 181
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.82 E-value=0.11 Score=42.79 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=32.6
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
...+|+|+|+|+|.+++.+++. ..-+++..|. +..++.|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~ 579 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAER 579 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Confidence 3579999999999999999986 3346899998 666766653
No 182
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.68 E-value=0.35 Score=36.01 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+++.+. ......+||.=.|.|..+.+++++.|+.+++.+|. |..++.++
T Consensus 10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak 61 (305)
T TIGR00006 10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK 61 (305)
T ss_pred HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 34555555 45567899999999999999999998889999998 77777664
No 183
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.49 E-value=0.12 Score=40.74 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=20.9
Q ss_pred CCceEEEecCCCcHHHHHHHHHC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKY 97 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~ 97 (118)
..++++|||||.|+++..++++.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~ 139 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN 139 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC
Confidence 56899999999999999999884
No 184
>PLN02476 O-methyltransferase
Probab=92.39 E-value=0.18 Score=37.05 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+.++|++||.++|..++.+++.-| +-+.+-+|. |+..+.|++
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~ 161 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKR 161 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 45679999999999999999999876 567788887 555665543
No 185
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.29 E-value=0.66 Score=31.57 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=31.3
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhh
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQD 113 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~ 113 (118)
+...||-+|+|-=+....+...+++++.+-.|+|+|++.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~ 116 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIAL 116 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHH
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHH
Confidence 355899999999999999999989999999999999875
No 186
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.08 E-value=0.5 Score=35.29 Aligned_cols=52 Identities=27% Similarity=0.279 Sum_probs=38.2
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+++.+. -.....+||.==|.|-.+.+++++.|+.+.+.+|+ |.+++.|++
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~ 62 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKE 62 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHC
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHH
Confidence 45566665 55678999999999999999999999999999999 888866643
No 187
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.98 E-value=0.77 Score=33.92 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
...+.+.-+ ......|+.||.|+|.+...++++-..+=++-.|
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D 89 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID 89 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC
Confidence 445666666 6778899999999999999999997666555555
No 188
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.94 E-value=0.53 Score=34.17 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=46.3
Q ss_pred HHHHHHhcchhh----HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHH-HCCCCcEEEeec-hHHhhhCC
Q 043449 51 FNNGMFSHSTIT----MKKFLENYKGFEGLKSVVDVGGGIGASLNMIIS-KYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 51 F~~~M~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~-~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+...|...++.. +..+....+ .+...+|+|.|-|+|.++..|+. ..|.-+++.+|. ++-.+.|+
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~ 136 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHH
Confidence 444476666643 334555555 77889999999999999999997 568788888886 55555544
No 189
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=90.76 E-value=0.3 Score=33.29 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc---------EEEeec-hHHhhhCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK---------GINFDL-PHVIQDAP 115 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~---------~~v~Dl-p~vi~~a~ 115 (118)
..++..-. |.+...|+|-=||+|+++++-+...++.. ++..|. +..++.|+
T Consensus 18 ~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~ 78 (179)
T PF01170_consen 18 AALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR 78 (179)
T ss_dssp HHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH
Confidence 34455555 77778999999999999999888777776 778886 66665543
No 190
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=90.34 E-value=0.58 Score=32.20 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=30.0
Q ss_pred hhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHC
Q 043449 61 ITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKY 97 (118)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~ 97 (118)
..+..++...+ |++.--|+.+|-|+|.+..+++++-
T Consensus 35 ~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~g 70 (194)
T COG3963 35 ILARKMASVID-PESGLPVLELGPGTGVITKAILSRG 70 (194)
T ss_pred HHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcC
Confidence 34566777888 8888899999999999999988763
No 191
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=90.32 E-value=0.37 Score=34.20 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 116 (118)
.++.++++.||.+.|.-++.++..-| +-+.|-.|+ |+-.+.|++
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~ 102 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE 102 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHH
Confidence 45789999999999999999999999 788888887 666666554
No 192
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=90.17 E-value=0.66 Score=35.24 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=29.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHh
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVI 111 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi 111 (118)
...++||||+++|.++..++++ +.+++-.|.-++-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~ 245 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA 245 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC
Confidence 5679999999999999999998 5589999965543
No 193
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=89.99 E-value=0.47 Score=34.61 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEE
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGI 103 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~ 103 (118)
+..+++|||.|.|.....++..+.++-+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aT 122 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYAT 122 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEee
Confidence 35789999999999999999999887554
No 194
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.74 E-value=1.2 Score=32.31 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHC-----CCCcEEEeechH
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKY-----PSIKGINFDLPH 109 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~-----P~l~~~v~Dlp~ 109 (118)
+.+...+|+.|+|.|.++..+.+.. +..+.++.|+-.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5677899999999999999999999 567889999743
No 195
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=89.64 E-value=0.27 Score=38.91 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=29.6
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCC--------CcEEEeec-hHHhhh
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPS--------IKGINFDL-PHVIQD 113 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~--------l~~~v~Dl-p~vi~~ 113 (118)
...+|+|.+||+|.++.+++++.+. +..+.+|. |..++.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHH
Confidence 4568999999999999999988763 34577776 444443
No 196
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.62 E-value=0.76 Score=32.25 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=33.8
Q ss_pred HhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeechHHh
Q 043449 68 ENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDLPHVI 111 (118)
Q Consensus 68 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dlp~vi 111 (118)
+.|.-+....+|+|+|...|+.+.-..++- |+-.+...|+-++.
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~ 106 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE 106 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc
Confidence 344424567899999999999998766665 99888888876554
No 197
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=89.47 E-value=0.78 Score=32.40 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=32.8
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.....+|++.|||.|..+..|+++ ..+++.+|+ |..|+.+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQA 75 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHH
Confidence 345678999999999999999987 578999999 5556554
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=88.78 E-value=0.76 Score=32.11 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhh
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQ 112 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~ 112 (118)
....+|+|.-+|.|.+++.+++..+..+++..|+ |..++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~ 139 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE 139 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH
Confidence 4568999999999999999999888888999998 66554
No 199
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=88.53 E-value=4 Score=27.47 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 48 NKIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 48 ~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
...|.+-|+..... .....+...+.+ .-|+++|=|.|..=-.+.+.+|+-++.|||+.
T Consensus 4 LDsfi~RmtaQR~~-L~~a~~~v~~~~--G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 4 LDSFIRRMTAQRDC-LNWAAAQVAGLP--GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCCC--CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 34566666654432 222333333233 66999999999999999999999999999973
No 200
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=87.66 E-value=1.1 Score=32.88 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=25.7
Q ss_pred CCceEEEecCCC---cHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGI---GASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~---G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
+...++|||+|. |..-.-..+..|+.|++=.|. |-|+.+++
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~r 112 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHAR 112 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHH
Confidence 688999999984 455555566789999999998 77777765
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=87.36 E-value=0.42 Score=32.37 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=25.2
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDA 114 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a 114 (118)
.+|+|+-||.|-.++++++.++++-++=.| |.-++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid-~~~~~~a 37 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDID-PERLECA 37 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES--HHHHHHH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECC-HHHHHHH
Confidence 369999999999999999998765444333 5444443
No 202
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.23 E-value=1.8 Score=32.69 Aligned_cols=86 Identities=26% Similarity=0.262 Sum_probs=58.2
Q ss_pred hhhccCchHHHHhcCCchhhhccCC-Ccccccc-cCchHHHHHHHHHHhcch---hhHHHHHHhcCCCCCCceEEEe---
Q 043449 11 VVWGRYHLKDAVLEGGIPFNMAYGM-NTYEYHG-KDPRYNKIFNNGMFSHST---ITMKKFLENYKGFEGLKSVVDV--- 82 (118)
Q Consensus 11 ~~~~w~~L~~~vr~g~~~f~~~~g~-~~~e~~~-~~p~~~~~F~~~M~~~~~---~~~~~~~~~~~~~~~~~~vvDv--- 82 (118)
+|.-...|+++||-...+|-..+.. ++.|.+. +||++.+...+....... .......+.|.+|-+...|||.
T Consensus 68 hyeil~sltdtvrpeddpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~irryggfygptcvvdfal~ 147 (500)
T COG4883 68 HYEILTSLTDTVRPEDDPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGFYGPTCVVDFALV 147 (500)
T ss_pred HHHHHHhhhcccCCCCCchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCccCCceEEEEEec
Confidence 5667788999998777788776653 4556544 677776654444444433 3334556678778889999995
Q ss_pred cCCCcHHHHHHHHH
Q 043449 83 GGGIGASLNMIISK 96 (118)
Q Consensus 83 GGg~G~~~~~l~~~ 96 (118)
-|++-.....++++
T Consensus 148 pgstsnvvnrilk~ 161 (500)
T COG4883 148 PGSTSNVVNRILKK 161 (500)
T ss_pred CCchHHHHHHHHHh
Confidence 46677777777776
No 203
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=87.18 E-value=2.9 Score=30.24 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHhcchhhHH----HHHHhcCCCCCCceEEEecCCCcHHHHHHHHH-CCCCcEEEeec
Q 043449 50 IFNNGMFSHSTITMK----KFLENYKGFEGLKSVVDVGGGIGASLNMIISK-YPSIKGINFDL 107 (118)
Q Consensus 50 ~F~~~M~~~~~~~~~----~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl 107 (118)
.|...|...++...+ .++...+ .....+||+.|-|+|.++..|++. .|.=++.-||.
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~ 73 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF 73 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc
Confidence 466666666665433 3555566 777899999999999999999975 58888888886
No 204
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.17 E-value=2.6 Score=29.71 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeechHH
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDLPHV 110 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dlp~v 110 (118)
..+.+.|.-+.+..+|+|+|...|..+.-+++.- +..+++..|+-++
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~ 81 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM 81 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc
Confidence 3556666546778999999999999999777765 4456888887443
No 205
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.14 E-value=1 Score=31.45 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=29.6
Q ss_pred CceEEEecCCCcHHHHHHHHHC-CCCcEEEeec-hHHhhh
Q 043449 76 LKSVVDVGGGIGASLNMIISKY-PSIKGINFDL-PHVIQD 113 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~ 113 (118)
...+++||+|+|..+..+++.. |+.-...-|+ |..++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~ 83 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA 83 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH
Confidence 5779999999999999988875 6666777787 555443
No 206
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.80 E-value=0.41 Score=34.04 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=28.8
Q ss_pred CCCceEEEecCCCcHHHHHHHHHC--CCCcEEEeec-hHHhhhCCC
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKY--PSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~--P~l~~~v~Dl-p~vi~~a~~ 116 (118)
....+++|||+|+|.++..+..-- |..-.+-.|+ |++++.+++
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~ 126 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKK 126 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHH
Confidence 345789999999999998877432 2222244554 777776543
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=86.27 E-value=1.4 Score=36.37 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=25.0
Q ss_pred HHHHHHhcCCC-CCCceEEEecCCCcHHHHHHHHH
Q 043449 63 MKKFLENYKGF-EGLKSVVDVGGGIGASLNMIISK 96 (118)
Q Consensus 63 ~~~~~~~~~~~-~~~~~vvDvGGg~G~~~~~l~~~ 96 (118)
+..++..-. | .+...++|-.||+|+++++.+..
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~ 211 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMM 211 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHH
Confidence 445555555 7 45689999999999999987653
No 208
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=86.01 E-value=1.2 Score=33.28 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.0
Q ss_pred CceEEEecCCCcHHHHHHHHHC
Q 043449 76 LKSVVDVGGGIGASLNMIISKY 97 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~ 97 (118)
..+||-||||.|.-..+++..+
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~ 108 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAF 108 (315)
T ss_pred CceEEEECCChHHHHHHHHHHH
Confidence 3689999999999888888777
No 209
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.97 E-value=1.2 Score=31.85 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=23.7
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCC--------cEEEeech
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSI--------KGINFDLP 108 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l--------~~~v~Dlp 108 (118)
.-+||++|+|+|.++..+++..... +.++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 4789999999999999998875543 56666643
No 210
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=85.83 E-value=1.1 Score=34.19 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcH----HHHHHHHHC---CCCcEEEeechH
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGA----SLNMIISKY---PSIKGINFDLPH 109 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~----~~~~l~~~~---P~l~~~v~Dlp~ 109 (118)
...|++.+. -.+.-+|||+|-|.|. +..+|+++. |++|.|..+.|.
T Consensus 99 NqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~ 151 (374)
T PF03514_consen 99 NQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPN 151 (374)
T ss_pred hHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCC
Confidence 346788877 5567899999999996 666677664 889999999864
No 211
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.69 E-value=1.2 Score=31.81 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=29.0
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
...+.|||+-++.+.+.+.+.+|..+++.-|.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV 48 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEV 48 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeec
Confidence 34499999999999999999999999998885
No 212
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=85.50 E-value=0.99 Score=32.57 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=34.2
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCC-CCcEEEeec-hHHhhhCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYP-SIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~ 115 (118)
..+.++|++||.+.|.-++.+++..| +.+++-+|. |+..+.|+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar 121 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL 121 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence 34578999999999999999999874 678888887 55555554
No 213
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=85.20 E-value=1.6 Score=33.44 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=18.0
Q ss_pred CCCCceEEEecCCCcHHHHHHHHH
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISK 96 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~ 96 (118)
|. .+.|||||+|+|.++.-.+++
T Consensus 176 F~-~kiVlDVGaGSGILS~FAaqA 198 (517)
T KOG1500|consen 176 FQ-DKIVLDVGAGSGILSFFAAQA 198 (517)
T ss_pred cC-CcEEEEecCCccHHHHHHHHh
Confidence 54 578999999999988765554
No 214
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=85.04 E-value=2.4 Score=32.71 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCceEEEecCCCcHHHH--------HHHHH-------CCCCcEEEeechH
Q 043449 75 GLKSVVDVGGGIGASLN--------MIISK-------YPSIKGINFDLPH 109 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~--------~l~~~-------~P~l~~~v~Dlp~ 109 (118)
+.-+|+|+|||+|..+. ++.++ -|.+++..=|||.
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~ 112 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPS 112 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Confidence 45689999999996543 33333 3568888889984
No 215
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=84.33 E-value=2.6 Score=31.07 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=32.4
Q ss_pred ccccccCchHHHHHHHHHHh----cchhhHHHHHHhcCCCCCCceEEEecCCCcHHHH
Q 043449 38 YEYHGKDPRYNKIFNNGMFS----HSTITMKKFLENYKGFEGLKSVVDVGGGIGASLN 91 (118)
Q Consensus 38 ~e~~~~~p~~~~~F~~~M~~----~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~ 91 (118)
++.+.+||..-..|+.+... +-......+++.+..-+...+|-|+|||.+.++.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence 34456777665555554433 2222334455544412456789999999999886
No 216
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=83.99 E-value=1.5 Score=31.69 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=32.3
Q ss_pred CC-CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhC
Q 043449 73 FE-GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDA 114 (118)
Q Consensus 73 ~~-~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a 114 (118)
|. +...+|.+|+|+| +...++..+....+++-|+|.+++.-
T Consensus 83 ~~~~~~~vlELGsGtg-lvG~~aa~~~~~~v~ltD~~~~~~~L 124 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTG-LVGILAALLLGAEVVLTDLPKVVENL 124 (248)
T ss_pred ccccceeEEEecCCcc-HHHHHHHHHhcceeccCCchhhHHHH
Confidence 44 3567999999999 66666667788899999999887653
No 217
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.46 E-value=3.3 Score=30.94 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc-EEEeec-hHHhhhCCC
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK-GINFDL-PHVIQDAPA 116 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-p~vi~~a~~ 116 (118)
..+++.+. .......||.==|.|-.+.+|++++|.+. .+.+|+ |..++.|++
T Consensus 13 ~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~ 66 (314)
T COG0275 13 NEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE 66 (314)
T ss_pred HHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH
Confidence 34555555 55668999998899999999999999887 899998 888888764
No 218
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=83.15 E-value=4.1 Score=29.04 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.8
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhh
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQD 113 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~ 113 (118)
...+|++.|||.|..+.-|++. ..+++.+|+ |..|+.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLS 80 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHH
Confidence 4579999999999999999886 778999998 555554
No 219
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=82.95 E-value=1.3 Score=35.33 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=32.1
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAPA 116 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 116 (118)
.+....++||-||+|.++.++++..-.+-++ .+.|+.++.|+.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~~ViGv-Ei~~~aV~dA~~ 423 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVKRVIGV-EISPDAVEDAEK 423 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccccceeee-ecChhhcchhhh
Confidence 5566899999999999999998876665544 333777666653
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=82.49 E-value=2 Score=31.42 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCCCceEEEecCCCcHHHHHHHHH-------CCCCcEEEeec-hHHh
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISK-------YPSIKGINFDL-PHVI 111 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~-------~P~l~~~v~Dl-p~vi 111 (118)
-....+|+|-.||+|.++.++.+. .+..+...+|. |..+
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~ 90 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV 90 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH
Confidence 445678999999999999998874 47778888887 4433
No 221
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.41 E-value=1.8 Score=32.45 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=36.8
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHC--CCCcEEEeechHHhhh
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKY--PSIKGINFDLPHVIQD 113 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~--P~l~~~v~Dlp~vi~~ 113 (118)
+.+...||-+|||.-.+...++..+ +.++.+=+|.|++++.
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~r 127 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVER 127 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHH
Confidence 4467899999999999999999999 8889999999999875
No 222
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.99 E-value=6.2 Score=30.25 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=31.1
Q ss_pred CchHHHHHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHC
Q 043449 44 DPRYNKIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKY 97 (118)
Q Consensus 44 ~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~ 97 (118)
-|+..+.|......+- .+.|-+ .. -.....+|.+|.|+|+++.-+++..
T Consensus 51 Apels~lFGella~~~---~~~wq~-~g-~p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 51 APELSQLFGELLAEQF---LQLWQE-LG-RPAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred chhHHHHHHHHHHHHH---HHHHHH-hc-CCCCceEEEeCCCcChHHHHHHHHH
Confidence 4777777876553321 122211 22 2335679999999999998887764
No 223
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=81.92 E-value=1.8 Score=33.58 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=26.8
Q ss_pred ceEEEecCC-CcHHHH-HHHHHCCCCcEEEeechHH
Q 043449 77 KSVVDVGGG-IGASLN-MIISKYPSIKGINFDLPHV 110 (118)
Q Consensus 77 ~~vvDvGGg-~G~~~~-~l~~~~P~l~~~v~Dlp~v 110 (118)
.-||-|||| +|..+. .|+++.|..+++|+|.-.+
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 458889998 788666 6777789999999996543
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=80.40 E-value=1.7 Score=33.25 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=31.1
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCC-cEEEeec-hHHhhhC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSI-KGINFDL-PHVIQDA 114 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dl-p~vi~~a 114 (118)
-+|+|.-+|+|..+++.+++-++. +++..|+ |..++.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i 85 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESI 85 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999987665 5788887 6666554
No 225
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=79.92 E-value=1.5 Score=32.98 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=26.7
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCc-EEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIK-GINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-p~vi~~a~ 115 (118)
...+|+|+|||.|..+.-..++ +++ .+..|+ +..|+.|+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~ 102 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEAR 102 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHH
Confidence 5689999999999998887776 443 577887 44555543
No 226
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=78.72 E-value=7.1 Score=28.16 Aligned_cols=59 Identities=24% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 55 MFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 55 M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
|..+-+......++.. ..+.++|+.||=|-|.....+.++.|..+.|+.--|+|.++-+
T Consensus 83 Mm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr 141 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR 141 (271)
T ss_pred hhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH
Confidence 4444443334444433 3567999999999999999999999999999999999988754
No 227
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.49 E-value=2.8 Score=32.51 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=25.8
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|.+...|||||.|.|+++.-+.-.| ++++...|-
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIeg 184 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEG 184 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEecc
Confidence 7788999999999999987665554 455555553
No 228
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=78.11 E-value=7.4 Score=28.88 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCC--CCcEEEeechHH
Q 043449 49 KIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYP--SIKGINFDLPHV 110 (118)
Q Consensus 49 ~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P--~l~~~v~Dlp~v 110 (118)
......+..........+.+.+..++...+|+=+|||.=.+..++.+.+| +-++++.|-|+.
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqf 309 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELGDFSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQF 309 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchh
Confidence 33444444443333344555443377778899999999999999999987 567888887764
No 229
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=77.62 E-value=3.2 Score=30.21 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=29.4
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
.++.+.|||||.|++...+.... -=+.+..|. -.+++.++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~ 112 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCR 112 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhh
Confidence 57899999999999999998886 224677775 34444443
No 230
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=75.71 E-value=16 Score=26.83 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=52.4
Q ss_pred cccccccCchHHHHHHHHHHhcchhh------HHHHHH-hcCC---CC--CCceEEEecCCCcH----HHHHHHHHCCC-
Q 043449 37 TYEYHGKDPRYNKIFNNGMFSHSTIT------MKKFLE-NYKG---FE--GLKSVVDVGGGIGA----SLNMIISKYPS- 99 (118)
Q Consensus 37 ~~e~~~~~p~~~~~F~~~M~~~~~~~------~~~~~~-~~~~---~~--~~~~vvDvGGg~G~----~~~~l~~~~P~- 99 (118)
++..+..+++..+.|-.+|+.--+.. ...+.+ ..|. .. +.-+|--.||++|. +++.+.+..|.
T Consensus 46 y~~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~ 125 (268)
T COG1352 46 YLNLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKL 125 (268)
T ss_pred HHHHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccc
Confidence 56667778888888888887643321 111111 1110 11 35689999999996 77778888874
Q ss_pred ----CcEEEeec-hHHhhhCCC
Q 043449 100 ----IKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 100 ----l~~~v~Dl-p~vi~~a~~ 116 (118)
.+++.-|+ ..+++.|++
T Consensus 126 ~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 126 AGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred cCCceEEEEEECCHHHHHHHhc
Confidence 66788887 778888875
No 231
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.98 E-value=2.8 Score=32.32 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=29.3
Q ss_pred hcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc-EEEeec
Q 043449 69 NYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK-GINFDL 107 (118)
Q Consensus 69 ~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl 107 (118)
..++|+ ..+|+|||-|.|+-+.++-.-+|+++ +++++.
T Consensus 108 ~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~ 146 (484)
T COG5459 108 RVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEA 146 (484)
T ss_pred hCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhcc
Confidence 334344 46699999999999999999999997 455543
No 232
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=74.87 E-value=7.6 Score=24.53 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=31.1
Q ss_pred HhcCCCCCCceEEEecCCCcH-HHHHHHHHCCCCc-EEEeechHHhhhC
Q 043449 68 ENYKGFEGLKSVVDVGGGIGA-SLNMIISKYPSIK-GINFDLPHVIQDA 114 (118)
Q Consensus 68 ~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~-~~v~Dlp~vi~~a 114 (118)
+.++.-.+.-.++|+-||+=. .+..+...++++. .+..++|-+++..
T Consensus 52 ~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~~~~~visG~nlpmlle~~ 100 (122)
T cd00006 52 AELDSGEGVLILTDLFGGSPNNAAARLSMEHPPVEVIAGVNLPMLLEAA 100 (122)
T ss_pred HHhCCCCcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEccCHHHHHHHH
Confidence 334423456779999444444 5566666667776 5889999988764
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.64 E-value=5.5 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=25.0
Q ss_pred HHHHhcCCCC-CCceEEEecCCCcHHHHHHHHH
Q 043449 65 KFLENYKGFE-GLKSVVDVGGGIGASLNMIISK 96 (118)
Q Consensus 65 ~~~~~~~~~~-~~~~vvDvGGg~G~~~~~l~~~ 96 (118)
..++.|+ .. ....++|||.++|-+..-++++
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHc
Confidence 3455666 43 6789999999999999999988
No 234
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=74.03 E-value=3 Score=33.16 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=16.0
Q ss_pred HHHHhcCCCCCCceEEEecCCCc
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIG 87 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G 87 (118)
.+...++ +.+...++|||||+=
T Consensus 120 Gv~~~~~-~~~~~lv~DIGGGSt 141 (492)
T COG0248 120 GVASTLP-RKGDGLVIDIGGGST 141 (492)
T ss_pred HHHhcCC-CCCCEEEEEecCCeE
Confidence 3455566 566789999999863
No 235
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=73.97 E-value=8.6 Score=29.45 Aligned_cols=37 Identities=22% Similarity=0.501 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCCceEEEecCCCc-----HHHHHHHHHCCCCc
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIG-----ASLNMIISKYPSIK 101 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G-----~~~~~l~~~~P~l~ 101 (118)
..++..|.+.++..+..+|||+| .++..+...||...
T Consensus 91 ~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 91 KAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred HHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 34566775778899999999998 46666788898764
No 236
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=71.83 E-value=5.6 Score=28.99 Aligned_cols=44 Identities=18% Similarity=0.093 Sum_probs=33.8
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCCCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAPAYP 118 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ 118 (118)
+..+|+|..+|-|..+++-+++--..-.++.--|.|++.|+-+|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP 177 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP 177 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC
Confidence 46789999999999999999986633334444588888887654
No 237
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=71.36 E-value=7.6 Score=30.20 Aligned_cols=86 Identities=26% Similarity=0.270 Sum_probs=56.7
Q ss_pred hhhccCchHHHHhcCCchhhhccCCC-cccccc-cCchHHHHHHHHHHhc---chhhHHHHHHhcCCCCCCceEEEec--
Q 043449 11 VVWGRYHLKDAVLEGGIPFNMAYGMN-TYEYHG-KDPRYNKIFNNGMFSH---STITMKKFLENYKGFEGLKSVVDVG-- 83 (118)
Q Consensus 11 ~~~~w~~L~~~vr~g~~~f~~~~g~~-~~e~~~-~~p~~~~~F~~~M~~~---~~~~~~~~~~~~~~~~~~~~vvDvG-- 83 (118)
+|.....|+++||--..+|-..+..+ +-|.+. +||++++.-.+.+... .........+.|.+|-+...|||..
T Consensus 67 HyeiL~~LT~tvrPeDDPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~RrygGFYGpTcVvDFAli 146 (499)
T PF09959_consen 67 HYEILKSLTDTVRPEDDPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYGGFYGPTCVVDFALI 146 (499)
T ss_pred HHHHHHHHhcccCCCCCchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhcCccCCceeeeeeec
Confidence 56677889999987778887766543 455544 6887765444444443 3333445677788898999999965
Q ss_pred -CCCcHHHHHHHHH
Q 043449 84 -GGIGASLNMIISK 96 (118)
Q Consensus 84 -Gg~G~~~~~l~~~ 96 (118)
|++-.....+++.
T Consensus 147 PGSTsNVVN~IL~~ 160 (499)
T PF09959_consen 147 PGSTSNVVNQILKK 160 (499)
T ss_pred CCchHHHHHHHHHh
Confidence 4555555566654
No 238
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=71.24 E-value=18 Score=27.21 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=36.9
Q ss_pred HHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 51 FNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 51 F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
+.+............+...+.......+|+=+|||.-.+-..|.+.+|++ ++.|-|.
T Consensus 267 ~~~~~~~~~~~i~~~i~~~~~~~~~~d~IiL~GGGA~ll~~~lk~~f~~~--~~~~~p~ 323 (344)
T PRK13917 267 FYKEQDSVIDEVMSGFEIAVGNINSFDRVIVTGGGANIFFDSLSHWYSDV--EKADESQ 323 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHHHcCCe--EEcCChH
Confidence 33344444443334444444335567788889999988888899999976 5666554
No 239
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=71.23 E-value=13 Score=23.38 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCceEEEecCCCcHH-HHHHHHHCCCCcE-EEeechHHhhhC
Q 043449 75 GLKSVVDVGGGIGAS-LNMIISKYPSIKG-INFDLPHVIQDA 114 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~-~~~l~~~~P~l~~-~v~Dlp~vi~~a 114 (118)
+.-.++|+=||+-.. +..+..++|++++ +...+|-+++.+
T Consensus 60 ~vivltDl~GGSp~n~a~~~~~~~~~~~vIsG~NLpmlle~~ 101 (116)
T TIGR00824 60 EVLFLVDIFGGSPYNAAARIIVDKPHMDVIAGVNLPLLLETL 101 (116)
T ss_pred CEEEEEeCCCCCHHHHHHHHHhhcCCEEEEEecCHHHHHHHH
Confidence 456789996666654 4456678899874 888999988764
No 240
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=69.92 E-value=8.7 Score=26.29 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=25.2
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHh
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVI 111 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi 111 (118)
..+++|+=+|+|.++.+.+.+--. +++.+|. +..+
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~ 78 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAI 78 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHH
T ss_pred CCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHH
Confidence 588999999999999998888533 5777776 4443
No 241
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.63 E-value=7.7 Score=26.36 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=24.6
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
....++||+|.|.|....+.++.. -.+.+.++|-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELN 104 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELN 104 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceecc
Confidence 345899999999999888776654 3345666653
No 242
>PRK06847 hypothetical protein; Provisional
Probab=69.42 E-value=8.3 Score=28.66 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=27.1
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
...|+=||||.+-++.++.-+.-+++++|+|.-
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 456888999998888887777778999999863
No 243
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=69.31 E-value=5.2 Score=30.07 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCCceEEEecCCCcHHHHHHH--------HHC--------CCCcEEEeechH
Q 043449 73 FEGLKSVVDVGGGIGASLNMII--------SKY--------PSIKGINFDLPH 109 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~--------~~~--------P~l~~~v~Dlp~ 109 (118)
..+.-+|+|+||++|..+..+. +++ |.++++.=|||.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~ 66 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPS 66 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TT
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC
Confidence 4566789999999998766543 233 345678888885
No 244
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=69.14 E-value=14 Score=28.18 Aligned_cols=38 Identities=29% Similarity=0.656 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCCc
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSIK 101 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 101 (118)
...++..|.+.++..+.++|||+|. ++..+...||+..
T Consensus 80 r~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 80 RKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred HHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 3456777767788999999998873 3444666788654
No 245
>PRK10742 putative methyltransferase; Provisional
Probab=68.27 E-value=18 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHhcCCCCCC--ceEEEecCCCcHHHHHHHHHCCCCcEEEeechHH
Q 043449 64 KKFLENYKGFEGL--KSVVDVGGGIGASLNMIISKYPSIKGINFDLPHV 110 (118)
Q Consensus 64 ~~~~~~~~~~~~~--~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~v 110 (118)
+.++++.. ..+. .+|+|.=.|.|..+..++.+ +.+++.+|.-.+
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~ 121 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPV 121 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHH
Confidence 45777776 5543 49999999999999999988 777888887443
No 246
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=68.12 E-value=7.9 Score=28.15 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=25.8
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
...+|+|||||--=++.-.....|..+.+..|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DI 137 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDI 137 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEES
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeC
Confidence 478999999999988888888888888888887
No 247
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=67.96 E-value=15 Score=27.23 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=27.0
Q ss_pred HHHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSI 100 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 100 (118)
..++..|.+..+..+.++|||+|. ++..+...||+.
T Consensus 81 ~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 81 KEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred HHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 345666756678899999999884 667788889853
No 248
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=67.59 E-value=17 Score=26.32 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=29.0
Q ss_pred CCceEEEecCCCcHHHHHHHHHCC-CCcEEEeechHHhhh
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYP-SIKGINFDLPHVIQD 113 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~ 113 (118)
+...||.+|+|-=+-...+. .| +++..-.|+|+|++.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~ 118 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAF 118 (260)
T ss_pred CCcEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHH
Confidence 45679999998877777663 33 588899999999874
No 249
>PRK06475 salicylate hydroxylase; Provisional
Probab=67.26 E-value=8.1 Score=29.24 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=28.3
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.+|+=||||.+-++.+++-+..+++++++|.-+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 467889999999999988888899999999643
No 250
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=67.03 E-value=6.7 Score=26.21 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=26.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.||=||||.+.+..+..-+.++.+.+++|.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 367799999999999888899999988863
No 251
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=66.67 E-value=10 Score=25.35 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=24.5
Q ss_pred CCceEEEecCCCcH--------------HHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGA--------------SLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~--------------~~~~l~~~~P~l~~~v~Dl 107 (118)
....++|+||+.=+ -.+....+.|+++++++|.
T Consensus 35 ~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd~ 81 (153)
T PF00549_consen 35 GPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVDI 81 (153)
T ss_dssp TEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEEE
T ss_pred CceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEEe
Confidence 45789999998662 3344556679999999984
No 252
>PRK08163 salicylate hydroxylase; Provisional
Probab=66.14 E-value=8.7 Score=28.81 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=27.9
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||.+-++.+++-+..+++++|+|.-
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQA 36 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeC
Confidence 46888999999999998888889999999963
No 253
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=64.77 E-value=14 Score=22.17 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=18.9
Q ss_pred EEEecCCCcHHHHHHHHHCCC-CcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPS-IKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl 107 (118)
++|+|+|.|... .+.+..+. ...+..|.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~ 80 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDL 80 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeC
Confidence 999999999977 44444443 35555665
No 254
>PRK07236 hypothetical protein; Provisional
Probab=64.52 E-value=10 Score=28.55 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=26.7
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||.+-++.++.-+..+++++|+|.-
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 56888999998888887777778999999963
No 255
>PRK09273 hypothetical protein; Provisional
Probab=64.51 E-value=5.1 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.4
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcE-EEeechHHhhhC
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKG-INFDLPHVIQDA 114 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~-~v~Dlp~vi~~a 114 (118)
..=++||+|.=..-.+.++|++++ .+.| |.....+
T Consensus 66 ~GIliCGTGiG~siAANK~pGIraalc~d-~~sA~la 101 (211)
T PRK09273 66 FVVTGCGTGQGAMLALNSFPGVVCGYCID-PTDAYLF 101 (211)
T ss_pred EEEEEcCcHHHHHHHHhcCCCeEEEEeCC-HHHHHHH
Confidence 444788999999999999999997 5555 5544443
No 256
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=64.09 E-value=11 Score=29.10 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=24.6
Q ss_pred ceEEEecCCCcHHHH--HHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLN--MIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~--~l~~~~P~l~~~v~Dlp 108 (118)
.+||=||||.|-+.. .+++..|+.+++++|.-
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 368889999886554 46667889999999863
No 257
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=64.06 E-value=16 Score=28.57 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=26.1
Q ss_pred HHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCC
Q 043449 67 LENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSI 100 (118)
Q Consensus 67 ~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 100 (118)
++..|.+.++..+-.+|||+|. ++..|...||+.
T Consensus 124 ~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~ 162 (431)
T cd02188 124 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKK 162 (431)
T ss_pred HhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcc
Confidence 3445556788899999999984 666788889975
No 258
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=62.84 E-value=24 Score=28.79 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=35.5
Q ss_pred cccccccCchHHHHHHHHHHhcchhhHHHHHHhcCCCCC--CceEEEecCCCcHHHHHHHHHC
Q 043449 37 TYEYHGKDPRYNKIFNNGMFSHSTITMKKFLENYKGFEG--LKSVVDVGGGIGASLNMIISKY 97 (118)
Q Consensus 37 ~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~--~~~vvDvGGg~G~~~~~l~~~~ 97 (118)
.||.+++||-.-..+.+|. ..++.+..++-+. ..+|.-+|||.|-+..+.+++-
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa 389 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAA 389 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHH
Confidence 4667778886555565543 3345554442332 5678889999999998887764
No 259
>PRK09126 hypothetical protein; Provisional
Probab=62.13 E-value=11 Score=28.25 Aligned_cols=31 Identities=16% Similarity=0.025 Sum_probs=26.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||.+-++.++.-+..+++++|+|.-
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3677999999888887777779999999964
No 260
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=61.74 E-value=7.1 Score=30.96 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=10.4
Q ss_pred CCCCceEEEecCCC
Q 043449 73 FEGLKSVVDVGGGI 86 (118)
Q Consensus 73 ~~~~~~vvDvGGg~ 86 (118)
..+...|+|||||+
T Consensus 130 ~~~~~lviDIGGGS 143 (496)
T PRK11031 130 GADQRLVVDIGGAS 143 (496)
T ss_pred CCCCEEEEEecCCe
Confidence 33346899999986
No 261
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=61.64 E-value=5.3 Score=26.37 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=22.7
Q ss_pred ecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+.||+|.=..-.+.++|++|+.+.-=|.....++
T Consensus 62 liCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar 95 (140)
T PF02502_consen 62 LICGTGIGMSIAANKVPGIRAALCSDPYSAKMAR 95 (140)
T ss_dssp EEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHH
T ss_pred EEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHH
Confidence 5567888888889999999986555566555544
No 262
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=60.82 E-value=12 Score=29.07 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=27.1
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
+||=||||.|-+..++..+....+++++|..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5778999999999998888889999999864
No 263
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=60.24 E-value=13 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=25.9
Q ss_pred CCCceEEEecCCC-cHHHH-HHHHHCCCCcEEEeec
Q 043449 74 EGLKSVVDVGGGI-GASLN-MIISKYPSIKGINFDL 107 (118)
Q Consensus 74 ~~~~~vvDvGGg~-G~~~~-~l~~~~P~l~~~v~Dl 107 (118)
++..+|+=||+|. |.++. .|++++|++.+.+++-
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek 53 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEK 53 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeec
Confidence 3456899999995 55554 4777799999988885
No 264
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=60.09 E-value=8.9 Score=21.68 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=16.7
Q ss_pred ecCCCcHHHHH-HHHHCCCCcEEEeechH
Q 043449 82 VGGGIGASLNM-IISKYPSIKGINFDLPH 109 (118)
Q Consensus 82 vGGg~G~~~~~-l~~~~P~l~~~v~Dlp~ 109 (118)
||||.+-++.+ .+++. +.+++|+|.-+
T Consensus 2 iGaG~sGl~aA~~L~~~-g~~v~v~E~~~ 29 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKA-GYRVTVFEKND 29 (68)
T ss_dssp ES-SHHHHHHHHHHHHT-TSEEEEEESSS
T ss_pred EeeCHHHHHHHHHHHHC-CCcEEEEecCc
Confidence 78885554444 44444 77999998643
No 265
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=59.98 E-value=43 Score=24.75 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.1
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
...+|+=+|||.-.+...+.++||+.+.++.|-|.
T Consensus 273 ~~~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 273 SIQNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred cccEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcH
Confidence 46678889999888888899999998876666554
No 266
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=59.94 E-value=3.5 Score=32.66 Aligned_cols=72 Identities=18% Similarity=0.328 Sum_probs=43.3
Q ss_pred cCchHHHHHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCCC
Q 043449 43 KDPRYNKIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPAY 117 (118)
Q Consensus 43 ~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~ 117 (118)
+.|+....++..|.+.-...........+ -.....|| |=|.|.+..-+....|.-+.+...+ |++++.|++|
T Consensus 266 r~~~l~s~~h~~m~~g~aL~~n~~~~~~~-~~~~~lvv--g~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~ 338 (482)
T KOG2352|consen 266 RKPELASQYHQMMIGGLALIMNRPPQKLD-TGGKQLVV--GLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQY 338 (482)
T ss_pred cCcccCcchhhhhhccceeccccCchhcc-ccCcEEEE--ecCCCccccceeeecCccceeEEEEChhHhhccHhh
Confidence 34556667888887655543222222222 22334444 4445888888888889766544444 9999988764
No 267
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=59.86 E-value=6.3 Score=29.78 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDA 114 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a 114 (118)
.+.+..+ ..+. .|+|+=||.|.++..+++....+-++=.. ++.++.|
T Consensus 188 ~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~-~~av~~A 234 (352)
T PF05958_consen 188 QALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIV-EEAVEDA 234 (352)
T ss_dssp HHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES--HHHHHHH
T ss_pred HHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCC-HHHHHHH
Confidence 3344444 3333 79999999999999999988765544222 5555544
No 268
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.78 E-value=12 Score=29.49 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=28.9
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechHH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPHV 110 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~v 110 (118)
..+|=||+|.|-++.++.-+--.++++|++....
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 3477799999999999999989999999986543
No 269
>PRK07045 putative monooxygenase; Reviewed
Probab=59.67 E-value=13 Score=27.87 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=28.0
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
..|+=||||.+-++.+++-+..+++++|+|.-+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 458889999999999888888899999999643
No 270
>PRK07538 hypothetical protein; Provisional
Probab=59.39 E-value=13 Score=28.24 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.2
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.|+=||||.+-++.++.-+.-+++++|+|.-+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 46779999999888877777789999999743
No 271
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=59.26 E-value=10 Score=27.42 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=23.8
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.|+=||||.+-++.+++-+.-.++++++|.-+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 37779999888888877777788999999743
No 272
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=59.15 E-value=14 Score=30.70 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=29.2
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
....|+=||||.+-++.+++-+...++++|+|.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 346788899999999999888888999999997
No 273
>PHA01634 hypothetical protein
Probab=58.98 E-value=10 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.8
Q ss_pred CCceEEEecCCCcHHHHHHHHH
Q 043449 75 GLKSVVDVGGGIGASLNMIISK 96 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~ 96 (118)
..++|+|||++.|.-++-++-+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~ 49 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR 49 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc
Confidence 3589999999999998887765
No 274
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=58.83 E-value=24 Score=24.97 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=20.7
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKY 97 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~ 97 (118)
+-..++|+|.|.|+|-.+++-+++-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG 101 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG 101 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh
Confidence 4457899999999999998877763
No 275
>PRK07588 hypothetical protein; Provisional
Probab=58.81 E-value=13 Score=27.90 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=25.1
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.|+=||||.+-++.++.-+...++++++|.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 477799999988888777777899999985
No 276
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=58.81 E-value=9.7 Score=27.60 Aligned_cols=13 Identities=38% Similarity=0.711 Sum_probs=10.4
Q ss_pred CCCceEEEecCCC
Q 043449 74 EGLKSVVDVGGGI 86 (118)
Q Consensus 74 ~~~~~vvDvGGg~ 86 (118)
.+...++|||||+
T Consensus 111 ~~~~lviDIGGGS 123 (285)
T PF02541_consen 111 DKNGLVIDIGGGS 123 (285)
T ss_dssp TSSEEEEEEESSE
T ss_pred cCCEEEEEECCCc
Confidence 3567899999984
No 277
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=58.66 E-value=18 Score=27.85 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=18.2
Q ss_pred CCCceEEEecCCCc-HHHHHHHHHCCCC
Q 043449 74 EGLKSVVDVGGGIG-ASLNMIISKYPSI 100 (118)
Q Consensus 74 ~~~~~vvDvGGg~G-~~~~~l~~~~P~l 100 (118)
.....+|=+||+.| .++.-+..+||++
T Consensus 110 ~~~~pwI~~GgSY~G~Laaw~r~kyP~~ 137 (434)
T PF05577_consen 110 APNSPWIVFGGSYGGALAAWFRLKYPHL 137 (434)
T ss_dssp GCC--EEEEEETHHHHHHHHHHHH-TTT
T ss_pred CCCCCEEEECCcchhHHHHHHHhhCCCe
Confidence 34567888999954 5666688999997
No 278
>PRK06753 hypothetical protein; Provisional
Probab=58.51 E-value=15 Score=27.30 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=25.5
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||.+-++.++.-+..+++++|+|.-
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 4777999998888887777778999999864
No 279
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=57.76 E-value=14 Score=27.55 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=27.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.|+=||||.+-++.++.-+..+++++|+|...
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 47889999998888888888899999999643
No 280
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=57.49 E-value=22 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=25.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||..-++.++.-+.++++++++|..
T Consensus 28 VvIVGgGpAGl~AA~~la~~G~~V~liEk~ 57 (257)
T PRK04176 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERK 57 (257)
T ss_pred EEEECccHHHHHHHHHHHhCCCeEEEEecC
Confidence 666999999888888888899999999864
No 281
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=57.41 E-value=6.7 Score=27.89 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=17.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKY 97 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~ 97 (118)
+..+.+|.|+|.|..+..++..+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~ 77 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV 77 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC
T ss_pred CcceEEecccccchhHHHHHHHh
Confidence 46899999999999999886554
No 282
>PRK10854 exopolyphosphatase; Provisional
Probab=57.02 E-value=8.2 Score=30.70 Aligned_cols=12 Identities=58% Similarity=1.049 Sum_probs=9.7
Q ss_pred CCceEEEecCCC
Q 043449 75 GLKSVVDVGGGI 86 (118)
Q Consensus 75 ~~~~vvDvGGg~ 86 (118)
+...|+|||||+
T Consensus 137 ~~~lvvDIGGGS 148 (513)
T PRK10854 137 GRKLVIDIGGGS 148 (513)
T ss_pred CCeEEEEeCCCe
Confidence 346899999985
No 283
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=56.94 E-value=16 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=25.4
Q ss_pred CCCceEEEecCCCcH--HHHHHHHHCCCC-cEEEeechHHhhh
Q 043449 74 EGLKSVVDVGGGIGA--SLNMIISKYPSI-KGINFDLPHVIQD 113 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~--~~~~l~~~~P~l-~~~v~Dlp~vi~~ 113 (118)
.+.-.++|+||..=. .+..+++. |+. +++..|+|-|...
T Consensus 60 dgVlvl~DLGgs~~n~e~a~~~l~~-~~~~~v~g~nlPlvega 101 (125)
T TIGR02364 60 DGVLIFYDLGSAVMNAEMAVELLED-EDRDKVHLVDAPLVEGA 101 (125)
T ss_pred CCEEEEEcCCCcHhHHHHHHHHhcc-ccccEEEEechhHHHHH
Confidence 346789999554422 46666653 444 5799999987653
No 284
>PLN00220 tubulin beta chain; Provisional
Probab=56.83 E-value=26 Score=27.44 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=26.5
Q ss_pred HHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCCc
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSIK 101 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 101 (118)
.++..|.+.++..+-.+|||+|. ++..|...||+.-
T Consensus 123 ~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~ 163 (447)
T PLN00220 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (447)
T ss_pred HHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccc
Confidence 45566657788999999999865 4446778898763
No 285
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=56.62 E-value=29 Score=24.12 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=25.3
Q ss_pred HHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCCcE
Q 043449 67 LENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSIKG 102 (118)
Q Consensus 67 ~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~~ 102 (118)
++..+....+-.+.-+|||+|+ ++..+.+.||+...
T Consensus 118 ~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~ 158 (216)
T PF00091_consen 118 IEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPI 158 (216)
T ss_dssp HHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEE
T ss_pred hccccccccceecccccceeccccccccchhhhccccccce
Confidence 3334545567788899999886 55567777888764
No 286
>PTZ00387 epsilon tubulin; Provisional
Probab=55.80 E-value=29 Score=27.50 Aligned_cols=36 Identities=22% Similarity=0.560 Sum_probs=26.8
Q ss_pred HHHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSI 100 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 100 (118)
..++..|.+.++..+-.+|||+|. ++..+...||..
T Consensus 123 ~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~ 163 (465)
T PTZ00387 123 RQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHV 163 (465)
T ss_pred HHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccC
Confidence 345666656778899999999983 555677788875
No 287
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=55.79 E-value=8.1 Score=29.30 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeechH-HhhhC
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLPH-VIQDA 114 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a 114 (118)
.|+-+| |.|++++.++++.- .+++.+|..+ -.+.|
T Consensus 171 ~I~G~G-GlGh~avQ~Aka~g-a~Via~~~~~~K~e~a 206 (339)
T COG1064 171 AVVGAG-GLGHMAVQYAKAMG-AEVIAITRSEEKLELA 206 (339)
T ss_pred EEECCc-HHHHHHHHHHHHcC-CeEEEEeCChHHHHHH
Confidence 455566 89999999999887 9999999843 34443
No 288
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=55.69 E-value=17 Score=25.63 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=24.4
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||.+-++.++.-+...++++|+|.-
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 667999988887777777778999999964
No 289
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=55.62 E-value=17 Score=27.94 Aligned_cols=32 Identities=13% Similarity=-0.035 Sum_probs=22.6
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..+||=||||.+.+..+-.-..++.++|++|.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~ 41 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISP 41 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcC
Confidence 46789999998887654332334678899883
No 290
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=55.53 E-value=15 Score=29.22 Aligned_cols=33 Identities=27% Similarity=0.191 Sum_probs=24.4
Q ss_pred ceEEEecCC-CcHHHH-HHHHHCCCCcEEEeechH
Q 043449 77 KSVVDVGGG-IGASLN-MIISKYPSIKGINFDLPH 109 (118)
Q Consensus 77 ~~vvDvGGg-~G~~~~-~l~~~~P~l~~~v~Dlp~ 109 (118)
.-||=|||| .|..+. .|++..|..+++|+|...
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 348889999 676555 455556889999999854
No 291
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=55.40 E-value=17 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=25.3
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|+=||||.+-++.++.-+...++++|+|.-.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 5669999988888877777789999999743
No 292
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=55.37 E-value=21 Score=27.39 Aligned_cols=31 Identities=6% Similarity=0.098 Sum_probs=23.8
Q ss_pred eEEEecCCCcHHHHH--HHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNM--IISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~--l~~~~P~l~~~v~Dlp 108 (118)
+||=||||.+.+..+ +++..|+.+++++|.-
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~ 34 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKT 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECC
Confidence 578899999876655 4566688899999854
No 293
>COG5023 Tubulin [Cytoskeleton]
Probab=55.18 E-value=17 Score=28.19 Aligned_cols=35 Identities=26% Similarity=0.553 Sum_probs=27.1
Q ss_pred HHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCC
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSI 100 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 100 (118)
.++..|.+.++...=-+|||+|. ++.+|...||.-
T Consensus 123 eAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK 162 (443)
T COG5023 123 EADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKK 162 (443)
T ss_pred HhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchh
Confidence 45667777888888899999986 566788888874
No 294
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=54.97 E-value=38 Score=28.24 Aligned_cols=39 Identities=18% Similarity=0.435 Sum_probs=28.3
Q ss_pred hHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcE
Q 043449 62 TMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKG 102 (118)
Q Consensus 62 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~ 102 (118)
-...++..+. -. .+-.+-+|=|+|.++..+++.||..|+
T Consensus 311 KlRsIL~~~~-i~-~~d~l~~GDGSGGita~lLR~~p~sr~ 349 (675)
T PF14314_consen 311 KLRSILKNLN-IK-YRDALCGGDGSGGITACLLRMNPTSRG 349 (675)
T ss_pred hHHHHHHhcC-CC-cceeEEEecCchHHHHHHHHhCcccce
Confidence 3455666555 22 244566777999999999999999997
No 295
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=54.79 E-value=18 Score=26.95 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=25.0
Q ss_pred EEEecCCCcHHHHHHHHHCCC-CcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPS-IKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dlp 108 (118)
|+=||||.+-++.++.-+... ++++++|..
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEAN 32 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCC
Confidence 667999998888887777777 999999974
No 296
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=54.65 E-value=23 Score=21.04 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=19.8
Q ss_pred CCCCceEEEecCCCcH-HHHHHHHHCC-CCc--EEEeechH
Q 043449 73 FEGLKSVVDVGGGIGA-SLNMIISKYP-SIK--GINFDLPH 109 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~-~~~~l~~~~P-~l~--~~v~Dlp~ 109 (118)
.+..++|+-||+++|. ++.+++.+|- +.. +|-||.|.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk~~ 76 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEKPP 76 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-----
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeeccCC
Confidence 5567889999999997 5556777762 222 47777654
No 297
>PRK05868 hypothetical protein; Validated
Probab=54.47 E-value=18 Score=27.19 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=25.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||.+-++.++.-+..+++++|+|.-
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERH 33 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Confidence 5777999999888887777778999999963
No 298
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=54.43 E-value=16 Score=27.43 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=25.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.|+=||||.+-++.+++-+.-.++++++|.
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 478899999988888777777899999995
No 299
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=54.40 E-value=11 Score=25.03 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=24.1
Q ss_pred ecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+.||+|.=..-.+.++|.+|+.+.-=|.....++
T Consensus 61 liCGtGiG~siaANK~~GIraa~~~d~~~A~~ar 94 (144)
T TIGR00689 61 LICGTGIGMSIAANKFKGIRAALCVDEYTAALAR 94 (144)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 5578888888889999999974443355555444
No 300
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=54.40 E-value=17 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=26.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||.+-++.+++-+..+++++|+|..
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 3777999999999888888889999999964
No 301
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=54.33 E-value=18 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=27.5
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
..|+=||||.+-++.++.-+...++++|+|.-+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 357889999999888887777899999999743
No 302
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=54.12 E-value=11 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=23.8
Q ss_pred ecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+.||+|.=..-.+.++|.+|+.+.-=|.....++
T Consensus 62 liCGtGiG~siaANK~~GIraa~~~d~~~A~~ar 95 (143)
T TIGR01120 62 LICGTGIGMSIAANKFAGIRAALCSEPYMAQMSR 95 (143)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 5567888778888999999974443355554443
No 303
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=53.48 E-value=19 Score=27.28 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=24.1
Q ss_pred eEEEecCCCcHHHHHHHHH-CCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISK-YPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dlp 108 (118)
+|+=||||.+-++.+++-+ .++++++|+|.-
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~ 33 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAA 33 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecC
Confidence 4777999998888776544 566899999974
No 304
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=53.47 E-value=50 Score=24.68 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=43.1
Q ss_pred HHHHHHHHhcchhh----HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeech
Q 043449 49 KIFNNGMFSHSTIT----MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDLP 108 (118)
Q Consensus 49 ~~F~~~M~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dlp 108 (118)
+.+..+|-..++.. +..++...+ .....+||.-|-|+|.++.+|+++- |.=+..-||.-
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH 139 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH 139 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec
Confidence 34667776666543 334555556 6667899999999999999999987 66677777753
No 305
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=53.41 E-value=44 Score=25.09 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHC----CCCcEEEeech
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISKY----PSIKGINFDLP 108 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~----P~l~~~v~Dlp 108 (118)
..+++.++ ....|||+|+|.|.-..-|+++. ...+.+-+|+-
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS 113 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence 34555443 34589999999999766666655 34567888864
No 306
>PRK06370 mercuric reductase; Validated
Probab=53.34 E-value=19 Score=27.93 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=25.8
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.|-+..++..+.-..+++++|..
T Consensus 8 vvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 8 AIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 777999999999998888778999999853
No 307
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=53.34 E-value=19 Score=27.68 Aligned_cols=30 Identities=10% Similarity=-0.054 Sum_probs=25.3
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.|-+..+..-+....+++++|..
T Consensus 6 vvVIG~GpaG~~aA~~l~~~g~~V~liE~~ 35 (438)
T PRK07251 6 LIVIGFGKAGKTLAAKLASAGKKVALVEES 35 (438)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEecC
Confidence 777999998888887777788999999864
No 308
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=53.28 E-value=15 Score=28.76 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=24.1
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
||-||+|.|-++.+..-+.-..+++|++.-.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~ 31 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD 31 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4669999999888876666788888887543
No 309
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=53.26 E-value=18 Score=27.95 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=25.6
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
||=||||.|-+..++..+.-+.+++++|.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~g~~v~lie~ 31 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAELGASVAMVER 31 (463)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 67799999999999888888999999985
No 310
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=53.24 E-value=22 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=25.7
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||.+-++.++.-+..+++++++|..
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 34677999998888887777778999999963
No 311
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=53.08 E-value=17 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.7
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.|+=||||.+-++.+++-+.-+++++|+|.
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred CEEEECccHHHHHHHHHHHhCCCEEEEEcC
Confidence 488899999888888777777899999997
No 312
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=52.80 E-value=33 Score=26.94 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=27.1
Q ss_pred HHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCCc
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSIK 101 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 101 (118)
.++..|.+..+..+-.+|||+|. ++..|...||...
T Consensus 119 ~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~ 159 (446)
T cd02189 119 EVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESL 159 (446)
T ss_pred HHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccc
Confidence 35566767788899999999984 5556777888753
No 313
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=52.69 E-value=19 Score=27.20 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=26.2
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||.+-++.+++-+...++++|+|..
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4778999999888887777778999999974
No 314
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=52.17 E-value=8.2 Score=27.71 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=19.9
Q ss_pred CC-CCceEEEecCCCcHHHHHHHHHCC
Q 043449 73 FE-GLKSVVDVGGGIGASLNMIISKYP 98 (118)
Q Consensus 73 ~~-~~~~vvDvGGg~G~~~~~l~~~~P 98 (118)
|. +..+++|+|.|.|.....++..+.
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~fe 135 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFE 135 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHH
Confidence 64 468999999999998877655443
No 315
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=52.11 E-value=18 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=20.2
Q ss_pred eEEEecCCCc-HHHH-HHHHHCCC-CcEEEeechH
Q 043449 78 SVVDVGGGIG-ASLN-MIISKYPS-IKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg~G-~~~~-~l~~~~P~-l~~~v~Dlp~ 109 (118)
.||=||||+- .++. .|++..|. ++++|++.|.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 3677999964 4433 36677777 9999998764
No 316
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=52.09 E-value=24 Score=27.31 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCC
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPS 99 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~ 99 (118)
+.+++..-. |.....++|==||+|+++++.+-..++
T Consensus 180 AaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~n 215 (381)
T COG0116 180 AAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAAN 215 (381)
T ss_pred HHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccc
Confidence 334555445 877789999999999999998888764
No 317
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=52.01 E-value=40 Score=25.39 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=29.5
Q ss_pred CCCCceEEEecCCC-cHHHHHHHHHCCCCcEEEeec-hHHhhhC
Q 043449 73 FEGLKSVVDVGGGI-GASLNMIISKYPSIKGINFDL-PHVIQDA 114 (118)
Q Consensus 73 ~~~~~~vvDvGGg~-G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 114 (118)
.....+|+.+|+|. |..+..++++...-++++.|. ++..+.+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~ 225 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA 225 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 44457788888877 889999999987545666654 4444443
No 318
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=51.92 E-value=41 Score=26.24 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=27.7
Q ss_pred HHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHH-HHHHHCC
Q 043449 53 NGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLN-MIISKYP 98 (118)
Q Consensus 53 ~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~-~l~~~~P 98 (118)
++|...+......+.+.|+ -.+..=|+-+||+.|+... +..+..|
T Consensus 72 ~ai~~M~~ga~~~v~~l~~-~g~i~Gvi~~GGs~GT~lat~aMr~LP 117 (403)
T PF06792_consen 72 EAIEAMARGAARFVSDLYD-EGKIDGVIGIGGSGGTALATAAMRALP 117 (403)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccEEEEecCCccHHHHHHHHHhCC
Confidence 3444444444444556666 5566779999999998554 4555554
No 319
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=51.79 E-value=9.7 Score=27.22 Aligned_cols=11 Identities=55% Similarity=0.882 Sum_probs=9.1
Q ss_pred CceEEEecCCC
Q 043449 76 LKSVVDVGGGI 86 (118)
Q Consensus 76 ~~~vvDvGGg~ 86 (118)
..-|||||||+
T Consensus 141 dg~VVDiGGGT 151 (277)
T COG4820 141 DGGVVDIGGGT 151 (277)
T ss_pred CCcEEEeCCCc
Confidence 46799999985
No 320
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=51.77 E-value=13 Score=24.79 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=24.3
Q ss_pred ecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+-||+|.=..-.+.++|.+|+.+.-=|.....++
T Consensus 64 liCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar 97 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIRAALCHDTYSAHLAR 97 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 3467888777888999999975554466655554
No 321
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=51.57 E-value=33 Score=26.67 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=25.5
Q ss_pred HHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCCc
Q 043449 67 LENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSIK 101 (118)
Q Consensus 67 ~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 101 (118)
++..|.+.++..+-.+|||+|. ++..|...||+.-
T Consensus 123 ~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 162 (425)
T cd02187 123 AESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 162 (425)
T ss_pred hccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcc
Confidence 4455556678899999999984 3456778898763
No 322
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=51.53 E-value=17 Score=27.20 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEecCCCcH--HHHHHHHHCCCCcE--EEee
Q 043449 79 VVDVGGGIGA--SLNMIISKYPSIKG--INFD 106 (118)
Q Consensus 79 vvDvGGg~G~--~~~~l~~~~P~l~~--~v~D 106 (118)
||=+|||+|. ++.+|.+...++.+ ++.|
T Consensus 1 vV~igGGtGl~~ll~gLk~~~~~ltaIVtv~D 32 (310)
T TIGR01826 1 VVAIGGGTGLSVLLRGLKELDSRITAIVTVAD 32 (310)
T ss_pred CEEEeCcchHHHHHHHHHhcCCCcEEEEECCc
Confidence 4668998886 56667766677764 5555
No 323
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=51.39 E-value=21 Score=26.54 Aligned_cols=55 Identities=22% Similarity=0.119 Sum_probs=32.4
Q ss_pred HHHHHHHhcchh---hHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 50 IFNNGMFSHSTI---TMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 50 ~F~~~M~~~~~~---~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.+...|..++.. ..+.+....+..+....++|+|||.|.+. ..+|.+-.+-.|+-
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~----~~~p~~~~ig~D~c 74 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYL----GVNPLCLIIGCDLC 74 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccC----cCCCcceeeecchh
Confidence 444444443332 23333333331234578999999999876 34577777777763
No 324
>PRK08013 oxidoreductase; Provisional
Probab=51.31 E-value=21 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=25.8
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.|+=||||..-++.+++-+..+++++|+|.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 477899999888888777778999999996
No 325
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=51.24 E-value=24 Score=26.64 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=19.6
Q ss_pred CCCceEEEecCCCcH--HHHHHHHHCC-CCcE
Q 043449 74 EGLKSVVDVGGGIGA--SLNMIISKYP-SIKG 102 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~--~~~~l~~~~P-~l~~ 102 (118)
....+|+=||||+|. ++..+.+.-| ++.+
T Consensus 5 ~~~~kvvvlgGGtGl~~lL~gLk~~~~~~iTa 36 (323)
T COG0391 5 AKKPKVVVLGGGTGLPKLLSGLKRLLPSEITA 36 (323)
T ss_pred ccCceEEEEcCCCCHHHHHHHHHhhcCceEEE
Confidence 345678889999987 5566666554 5554
No 326
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=51.04 E-value=29 Score=24.95 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=21.1
Q ss_pred CCceEEEecCCCcHHHHHHHHHC---CCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKY---PSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~---P~l~~~v~Dl 107 (118)
.-..|+.||||+|..- +-| |..++|..|-
T Consensus 76 ~K~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDp 107 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANF----KFYPWKPINSVTCLDP 107 (252)
T ss_pred CccceEEecccCCCCc----ccccCCCCceEEEeCC
Confidence 4567899999999864 344 4556788885
No 327
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=50.97 E-value=24 Score=26.43 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=13.4
Q ss_pred eEEEecCCCcH--HHHHHHHHC
Q 043449 78 SVVDVGGGIGA--SLNMIISKY 97 (118)
Q Consensus 78 ~vvDvGGg~G~--~~~~l~~~~ 97 (118)
+||=+|||+|. ++..+++..
T Consensus 2 ~iv~lgGGtG~~~lL~GL~~~~ 23 (303)
T PRK13606 2 MITVLSGGTGTAKLLRGLKAVL 23 (303)
T ss_pred eEEEEeCccCHHHHHHHHHhcc
Confidence 46778888776 566666663
No 328
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=50.57 E-value=33 Score=26.78 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=25.5
Q ss_pred HHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCCc
Q 043449 67 LENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSIK 101 (118)
Q Consensus 67 ~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 101 (118)
++..|.+.++..+-.+|||+|. ++..|...||...
T Consensus 125 ~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~ 164 (434)
T cd02186 125 ADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKS 164 (434)
T ss_pred HhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccc
Confidence 4445556778889999999875 4556788898543
No 329
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=50.57 E-value=20 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.5
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
-||=||||.+-+..++.-+....+++++|..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~ 36 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD 36 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 3777999999988887666678899999964
No 330
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=50.40 E-value=22 Score=28.11 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=22.3
Q ss_pred EEEecCC-CcH-HHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGG-IGA-SLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg-~G~-~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=|||| .|. .+.+|++.+|+.+++|+|..
T Consensus 3 VvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~ 34 (483)
T TIGR01320 3 VVLIGAGIMSATLGVLLRELEPNWSITLIERL 34 (483)
T ss_pred EEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 5668998 454 44456666799999999984
No 331
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=50.16 E-value=28 Score=26.75 Aligned_cols=32 Identities=25% Similarity=0.077 Sum_probs=23.6
Q ss_pred CCceEEEecCCCcHHHHH--HHHHCCCCcEEEee
Q 043449 75 GLKSVVDVGGGIGASLNM--IISKYPSIKGINFD 106 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~--l~~~~P~l~~~v~D 106 (118)
..-.|+-||||+|-.+.+ +.++.|.=++.+.|
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve 71 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE 71 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence 345678899999986655 77888887766555
No 332
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=50.07 E-value=18 Score=27.02 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=17.3
Q ss_pred EEEecCCCcH--HHHHHHHHCCCCcE--EEee
Q 043449 79 VVDVGGGIGA--SLNMIISKYPSIKG--INFD 106 (118)
Q Consensus 79 vvDvGGg~G~--~~~~l~~~~P~l~~--~v~D 106 (118)
||=+|||+|. ++.+|++...++.+ ++.|
T Consensus 1 iV~igGGtGl~~ll~gLk~~~~~itaIVtv~D 32 (308)
T cd07187 1 IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTD 32 (308)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCC
Confidence 4567888876 55566666666664 4444
No 333
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=49.65 E-value=25 Score=26.53 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=26.4
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||.+-++.++.-+..+++++|+|.-
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~ 34 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 35788999998888887777779999999964
No 334
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=49.25 E-value=23 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=25.9
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.||=||+|.|-++.+..-+.-..+++|++.-.
T Consensus 3 dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 47779999998888877777788999988643
No 335
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=49.11 E-value=84 Score=21.49 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=39.7
Q ss_pred cccCchHHHHHHHHHHhcchh-----hHHHHHHhcCCCCCCceEEE--ecCCCcHHHH-HHHHHCCCCcEEEee
Q 043449 41 HGKDPRYNKIFNNGMFSHSTI-----TMKKFLENYKGFEGLKSVVD--VGGGIGASLN-MIISKYPSIKGINFD 106 (118)
Q Consensus 41 ~~~~p~~~~~F~~~M~~~~~~-----~~~~~~~~~~~~~~~~~vvD--vGGg~G~~~~-~l~~~~P~l~~~v~D 106 (118)
+..|+.+.+...++|....-. .....+.........--||| +|+|+|-..+ ++.++.++.+.+|+-
T Consensus 15 vdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 15 VDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred ecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 456777888888998864221 11111111111223345777 5888997655 577888999987653
No 336
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=49.03 E-value=22 Score=28.20 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=26.2
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
..|+=||||.+-++.++.-+..+++++++|
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 458889999999999998888999998886
No 337
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=48.95 E-value=26 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=26.5
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||.|-+..++..+.-..+++++|.+
T Consensus 5 vvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 5 LFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 677999999999999998889999999864
No 338
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=48.69 E-value=25 Score=26.52 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=26.6
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||.+-++.++.-+.-+.+++|+|.-
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 50 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQ 50 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecC
Confidence 45888999998888887777778999999974
No 339
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=48.51 E-value=25 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=25.2
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||..-++.++.-+.-+++++++|.-
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4777999988888777666678999999974
No 340
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=48.37 E-value=17 Score=28.11 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=22.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.+-.+.++..+--.+++++++.-
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKG 31 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 677999999999999999999999888853
No 341
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=47.65 E-value=23 Score=26.59 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=33.6
Q ss_pred eEEEecCC-CcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 78 SVVDVGGG-IGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 78 ~vvDvGGg-~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
+|+=+|.| .|.++.++++.+.-.++++.|+ |.-++.|++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 78888888 6999999999999999999998 777777755
No 342
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=47.62 E-value=14 Score=29.12 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=22.2
Q ss_pred CCceEEEecCCCcHHHHH-HHHHCCCCc
Q 043449 75 GLKSVVDVGGGIGASLNM-IISKYPSIK 101 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~-l~~~~P~l~ 101 (118)
+..-|+-+||+.|-++.+ +.-+|||+-
T Consensus 165 ~~~pvIafGGSYGGMLaAWfRlKYPHiv 192 (492)
T KOG2183|consen 165 EASPVIAFGGSYGGMLAAWFRLKYPHIV 192 (492)
T ss_pred ccCcEEEecCchhhHHHHHHHhcChhhh
Confidence 456788899999987777 888999973
No 343
>PRK06116 glutathione reductase; Validated
Probab=47.48 E-value=25 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.6
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||.|-+..++..+--..+++++|..
T Consensus 7 vvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 7 LIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 777999999888888887778999999964
No 344
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=47.47 E-value=18 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=24.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..++|+|+|||.|--.+-...+.- .++..+|.-
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~n 148 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFN 148 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecc
Confidence 358999999999988776555533 667777763
No 345
>PLN00222 tubulin gamma chain; Provisional
Probab=47.47 E-value=41 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=25.7
Q ss_pred HHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCC
Q 043449 67 LENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSI 100 (118)
Q Consensus 67 ~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 100 (118)
++..|.+.++..+-.+|||+|. ++..|...||..
T Consensus 126 ~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~ 164 (454)
T PLN00222 126 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKK 164 (454)
T ss_pred HHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCc
Confidence 3455656778889999999874 566678889875
No 346
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=47.40 E-value=9.7 Score=23.74 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=29.3
Q ss_pred HhcCCCCCCceEEEecCCCcHHHH-HHHHHCCCCc-EEEeechHHhhhC
Q 043449 68 ENYKGFEGLKSVVDVGGGIGASLN-MIISKYPSIK-GINFDLPHVIQDA 114 (118)
Q Consensus 68 ~~~~~~~~~~~vvDvGGg~G~~~~-~l~~~~P~l~-~~v~Dlp~vi~~a 114 (118)
+.++.-.+.-.++|++||+-.... .....+|.++ ....++|-+++.+
T Consensus 52 ~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G~Nlpmlle~~ 100 (116)
T PF03610_consen 52 EELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISGVNLPMLLEAL 100 (116)
T ss_dssp HHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES--HHHHHHHH
T ss_pred HhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEecccHHHHHHHH
Confidence 444413346679999998766444 4555666765 5788899887753
No 347
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=47.34 E-value=31 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=24.1
Q ss_pred eEEEecCCCcHHHH--HHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLN--MIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~--~l~~~~P~l~~~v~Dl 107 (118)
+++=||||.=-++. .|.+++|++..+|||-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~ 33 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEA 33 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEec
Confidence 57789999655444 4899999999999985
No 348
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=47.25 E-value=21 Score=26.69 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=15.4
Q ss_pred EEEecCCCcH--HHHHHHHHCCCCcE
Q 043449 79 VVDVGGGIGA--SLNMIISKYPSIKG 102 (118)
Q Consensus 79 vvDvGGg~G~--~~~~l~~~~P~l~~ 102 (118)
||=+|||+|. ++.+|++.-.++.+
T Consensus 1 iv~igGGtGl~~ll~gLk~~~~~lta 26 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEFPVEITA 26 (309)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEE
Confidence 4568888886 55566655556654
No 349
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=47.21 E-value=10 Score=29.62 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
..+..+|+|+=||.|.++..++++.-.+.++=.. |+.++.|+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~-~~aV~~A~ 332 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEIS-PEAVEAAQ 332 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhcccCCEEEEEecC-HHHHHHHH
Confidence 3455789999999999999999766555554333 55555544
No 350
>PRK06185 hypothetical protein; Provisional
Probab=46.88 E-value=26 Score=26.38 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=25.1
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||..-++.++.-+..+++++++|.-
T Consensus 8 dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 8 DCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 4777999988877777766678999999973
No 351
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=46.79 E-value=27 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.8
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.|-+..++..+.-..+++++|..
T Consensus 7 vvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 7 LVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 777999999988888888788999999964
No 352
>PRK06126 hypothetical protein; Provisional
Probab=46.79 E-value=27 Score=27.69 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=27.1
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||.+-++.++.-+.-.++++|+|..
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~ 39 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERK 39 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45888999999888887777789999999964
No 353
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=46.45 E-value=27 Score=26.86 Aligned_cols=29 Identities=28% Similarity=0.180 Sum_probs=22.9
Q ss_pred EEEecCCCcHHHHHHHHHC----CCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKY----PSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~----P~l~~~v~Dl 107 (118)
|+=||||..-++.++.-+. .+++++|+|.
T Consensus 3 V~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 3 VVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred EEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 6779999887777765554 5889999997
No 354
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.33 E-value=28 Score=27.08 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.0
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||.|-+..++..+--..+++++|.
T Consensus 7 vvIIG~GpaG~~AA~~aa~~G~~V~lie~ 35 (466)
T PRK07818 7 VVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35 (466)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 77799999998888887777899999985
No 355
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=46.13 E-value=21 Score=26.16 Aligned_cols=11 Identities=55% Similarity=0.857 Sum_probs=9.2
Q ss_pred ceEEEecCCCc
Q 043449 77 KSVVDVGGGIG 87 (118)
Q Consensus 77 ~~vvDvGGg~G 87 (118)
..++|||||+=
T Consensus 127 ~~v~DiGGGSt 137 (300)
T TIGR03706 127 GLVVDIGGGST 137 (300)
T ss_pred cEEEEecCCeE
Confidence 59999999853
No 356
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=45.38 E-value=27 Score=27.09 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||.|-+..++..+--..+++++|..
T Consensus 5 vvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 5 YLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 677999999998888888888999999864
No 357
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=45.37 E-value=29 Score=27.14 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=28.4
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.+|+=||||.+-++.|+.-+--..+++|++.-
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~ 34 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESR 34 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeec
Confidence 56888999999999999998899999999863
No 358
>PTZ00335 tubulin alpha chain; Provisional
Probab=45.33 E-value=42 Score=26.39 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=25.8
Q ss_pred HHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCCc
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSIK 101 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 101 (118)
.++..|.+.++..+-.+|||+|. ++..|...||...
T Consensus 125 ~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~ 165 (448)
T PTZ00335 125 LADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKS 165 (448)
T ss_pred hHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccc
Confidence 34555656778889999999876 4455778888753
No 359
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=45.22 E-value=33 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=25.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||..-++.++.-+.-+++++++|.-
T Consensus 8 dV~IvGaG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 8 DAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 4677999998888887777778999999973
No 360
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=44.92 E-value=31 Score=26.52 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=23.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.+-+..++.-+--.++++++|..
T Consensus 6 vvVIGgGpaGl~aA~~la~~g~~V~lie~~ 35 (441)
T PRK08010 6 AVIIGFGKAGKTLAVTLAKAGWRVALIEQS 35 (441)
T ss_pred EEEECCCHhHHHHHHHHHHCCCeEEEEcCC
Confidence 777999998888877666567889999963
No 361
>PLN00221 tubulin alpha chain; Provisional
Probab=44.84 E-value=42 Score=26.41 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=26.7
Q ss_pred HHHHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCC
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSI 100 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 100 (118)
..++..|.+.++..+-.+|||+|. ++..|...||..
T Consensus 124 ~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~ 164 (450)
T PLN00221 124 KLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (450)
T ss_pred HHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccc
Confidence 345666767788999999999976 444577788865
No 362
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=44.73 E-value=20 Score=24.09 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=24.1
Q ss_pred ecCCCcHHHHHHHHHCCCCcE-EEeechHHhhhCCC
Q 043449 82 VGGGIGASLNMIISKYPSIKG-INFDLPHVIQDAPA 116 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~-~v~Dlp~vi~~a~~ 116 (118)
+.||+|.=..-.+.++|.+|+ .+.| |.....+++
T Consensus 64 liCGTGiG~~iaANKv~GiraAl~~D-~~sA~~ar~ 98 (151)
T COG0698 64 LICGTGIGMSIAANKVPGIRAALVSD-PTSAKLARE 98 (151)
T ss_pred EEecCChhHHHHhhccCCeEEEEecC-HHHHHHHHh
Confidence 567788777778899999997 4455 555555543
No 363
>PLN02661 Putative thiazole synthesis
Probab=44.60 E-value=44 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=23.5
Q ss_pred ceEEEecCCCcHHHHHHHH-HCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIIS-KYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~-~~P~l~~~v~Dlp 108 (118)
..|+-||||..-+..++.- +.|+++++++|.-
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~ 125 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS 125 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 3578899987666666544 4789999999863
No 364
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=44.56 E-value=20 Score=24.53 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=23.8
Q ss_pred ecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+-||+|.=..-.+.++|.+|+.+.-=|.....++
T Consensus 63 liCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar 96 (171)
T PRK12615 63 CICGTGVGINNAVNKVPGIRSALVRDMTTALYAK 96 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Confidence 4567888777788999999974443355555544
No 365
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=44.30 E-value=33 Score=25.87 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=22.9
Q ss_pred EEEecCCC-cH-HHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGI-GA-SLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~-G~-~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|+=||||. |. .+..|++++|..+++|+|...
T Consensus 5 VvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 5 FVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 66699984 43 344567778999999999854
No 366
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=44.25 E-value=30 Score=26.66 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=24.8
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
||=||||.+-+..++.-+....+++++|.
T Consensus 6 vvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 6 VIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 77799999888888877777889999986
No 367
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.19 E-value=31 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=25.6
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||.|-+..++..+.-..+++++|.
T Consensus 6 vvVIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 6 VVIIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 67799999999999888888899999985
No 368
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=44.13 E-value=22 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=23.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
+...|+|||.|+|.++...+++-.+- ++..+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~-vtA~E 96 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADS-VTACE 96 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCe-EEeeh
Confidence 45789999999999999988887443 44333
No 369
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=44.11 E-value=29 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.3
Q ss_pred EEEecCCCcHHHHHHHHHCC-CCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYP-SIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl 107 (118)
|+=||||.|-+..++..+-. ..++++.|.
T Consensus 6 viVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 6 LVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 67799999999888777765 789988885
No 370
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=44.06 E-value=37 Score=24.10 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=24.7
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
.++-|+|.|+|-++.-.+++ .=|++..++ |....-|++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~e 72 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEE 72 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhh
Confidence 56889999999988765555 345555444 555544443
No 371
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=43.99 E-value=14 Score=27.52 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=21.5
Q ss_pred CceEEEecCCCcHH-HHHHHHHCCCCcEEEeec-hHHhhhCC
Q 043449 76 LKSVVDVGGGIGAS-LNMIISKYPSIKGINFDL-PHVIQDAP 115 (118)
Q Consensus 76 ~~~vvDvGGg~G~~-~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 115 (118)
..+++|||.|.-.. .+--++.| +.+++.-|. |..++.|+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~ 143 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESAR 143 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHH
Confidence 56899999887654 33333444 788887776 55555543
No 372
>PLN02546 glutathione reductase
Probab=43.68 E-value=31 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=25.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||.|-+..++..+.-..+++++|.|
T Consensus 82 vvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 111 (558)
T PLN02546 82 LFTIGAGSGGVRASRFASNFGASAAVCELP 111 (558)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 777999999998888888889999999853
No 373
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=43.64 E-value=30 Score=25.67 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEecCCCcHHHHH--HHHH-CCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNM--IISK-YPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~--l~~~-~P~l~~~v~Dl 107 (118)
+||=||||.+....+ +.++ .|+.+++++|.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~ 33 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINP 33 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECC
Confidence 377799998865543 3222 57888999985
No 374
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=43.02 E-value=41 Score=26.66 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=27.5
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|....-||=||+| .-++.++..+-..++++|+|...
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~ 39 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATD 39 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCC
Confidence 4333457779999 88888888888889999998643
No 375
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=42.54 E-value=35 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=26.3
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||.+-+..++..+.-.++++++|.
T Consensus 7 viIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 7 VVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 77799999999999988888999999996
No 376
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=42.51 E-value=23 Score=23.71 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=23.7
Q ss_pred ecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+-||+|.=..-.+.++|++|+.+.--|.....++
T Consensus 67 liCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar 100 (151)
T PTZ00215 67 LVCGSGIGISIAANKVKGIRCALCHDHYTARMSR 100 (151)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 4467888778888999999975444455554443
No 377
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.40 E-value=34 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=24.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.|-+..+...+--..+++++|..
T Consensus 7 vvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 36 (471)
T PRK06467 7 VVVLGAGPAGYSAAFRAADLGLETVCVERY 36 (471)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 777999998888887777778999999963
No 378
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=41.93 E-value=35 Score=27.42 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=31.3
Q ss_pred CceEEEecCC-CcHHHHHHHHHCCCCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGG-IGASLNMIISKYPSIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg-~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 116 (118)
..+|+=+|+| .|..++..++..-. +++++|. |+..+.+++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 4678888887 78899999998875 7999997 777766543
No 379
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=41.89 E-value=37 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=29.3
Q ss_pred CceEEEecCCCcH----HHHHHHHHCC----CCcEEEeec-hHHhhhCCC
Q 043449 76 LKSVVDVGGGIGA----SLNMIISKYP----SIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 76 ~~~vvDvGGg~G~----~~~~l~~~~P----~l~~~v~Dl-p~vi~~a~~ 116 (118)
.-+|...||++|. +++.+.+..+ +++++.-|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 3689999999997 4444555433 356788887 778888764
No 380
>PRK06184 hypothetical protein; Provisional
Probab=41.87 E-value=36 Score=26.70 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=25.3
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.|+=||||..-++.++.-+.-.++++|+|.
T Consensus 5 dVlIVGaGpaGl~~A~~La~~Gi~v~viE~ 34 (502)
T PRK06184 5 DVLIVGAGPTGLTLAIELARRGVSFRLIEK 34 (502)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 477799998888888777777899999997
No 381
>PRK02399 hypothetical protein; Provisional
Probab=41.83 E-value=74 Score=24.90 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=26.2
Q ss_pred HHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHH-HHHHHCC
Q 043449 53 NGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLN-MIISKYP 98 (118)
Q Consensus 53 ~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~-~l~~~~P 98 (118)
++|..++......+.+.|. -.+..=|+-+||+.|+.+. ...+..|
T Consensus 74 ~ai~~M~~ga~~~v~~L~~-~g~i~gviglGGs~GT~lat~aMr~LP 119 (406)
T PRK02399 74 SAMAAMAEGAAAFVRELYE-RGDVAGVIGLGGSGGTALATPAMRALP 119 (406)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccEEEEecCcchHHHHHHHHHhCC
Confidence 3444444433333334555 4457779999999998554 4555544
No 382
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=41.82 E-value=33 Score=24.92 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeechHHh
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPHVI 111 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi 111 (118)
...+.+|.-=|.|--...|++++|+++..+.|+-++.
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A 79 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVA 79 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHH
Confidence 4688999998999999999999999999889985553
No 383
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=41.75 E-value=35 Score=25.42 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=23.7
Q ss_pred eEEEecCCCcHHHHHHHHHCC---CCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYP---SIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P---~l~~~v~Dl 107 (118)
.|+=||||.+-++.++.-+.- ..+++|+|.
T Consensus 5 dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 5 DVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 477799998877777665553 899999998
No 384
>PLN02463 lycopene beta cyclase
Probab=41.55 E-value=32 Score=26.92 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=24.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.|+=||||...++.+..-+..+++++++|.
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~ 59 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDP 59 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEecc
Confidence 477799998888887666667999999986
No 385
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=41.13 E-value=40 Score=26.98 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCceEEEecCCCcHHHHHHHHH----CCCCc
Q 043449 64 KKFLENYKGFEGLKSVVDVGGGIGASLNMIISK----YPSIK 101 (118)
Q Consensus 64 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~----~P~l~ 101 (118)
...++..|.+.++..+.|++||.|-++..+++. ||+-.
T Consensus 142 R~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~ 183 (493)
T cd06060 142 RFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKAS 183 (493)
T ss_pred HHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcCccc
Confidence 345677776788999999999998887765554 77754
No 386
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=41.13 E-value=14 Score=26.22 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=8.9
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-.++|||||-|.
T Consensus 197 l~~idiGGG~~~ 208 (251)
T PF02784_consen 197 LEFIDIGGGFGV 208 (251)
T ss_dssp -SEEEEESSB-S
T ss_pred ccEEEeeCCCCC
Confidence 679999999775
No 387
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=40.91 E-value=46 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=25.2
Q ss_pred CceEEEecCCCcHHHH--HHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLN--MIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~--~l~~~~P~l~~~v~Dl 107 (118)
..+|+-||||.--++. .|++++|++..++++-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea 44 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEA 44 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEec
Confidence 4678889999766554 4889999999888874
No 388
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=40.90 E-value=35 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=25.8
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechHH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPHV 110 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~v 110 (118)
||=||+|.|-++.+..-+.-..+++|++.-..
T Consensus 3 vvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 34 (493)
T TIGR02730 3 AIVIGSGIGGLVTATQLAVKGAKVLVLERYLI 34 (493)
T ss_pred EEEECCcHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 67799999999998877777888888876443
No 389
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=40.84 E-value=27 Score=25.98 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=27.1
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCc----EEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIK----GINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~----~~v~Dl 107 (118)
+...||=+|.+.|.-..-|.+.||+++ .++.|-
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp 94 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDP 94 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEES
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECC
Confidence 457899999999999999999999977 899995
No 390
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=40.57 E-value=24 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=23.5
Q ss_pred ecCCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
+-||+|.=..-.+.++|.+|+.+.-=|.....++
T Consensus 63 liCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar 96 (171)
T TIGR01119 63 CICGTGVGINNAVNKVPGVRSALVRDMTSALYAK 96 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Confidence 4467888777788999999974443355555544
No 391
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=40.57 E-value=43 Score=26.42 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
||-||||.|-+..++..+--.++-+..|-
T Consensus 42 vvvIG~GpGGyvAAikAaQlGlkTacvEk 70 (506)
T KOG1335|consen 42 VVVIGGGPGGYVAAIKAAQLGLKTACVEK 70 (506)
T ss_pred EEEECCCCchHHHHHHHHHhcceeEEEec
Confidence 88899999999999999988888655553
No 392
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=40.56 E-value=34 Score=25.58 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=26.2
Q ss_pred CCceEEEecCCCcH----HHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGA----SLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~----~~~~l~~~~P~l~~~v~Dl 107 (118)
+...++|||||.-. -+..++.+-|.+++++...
T Consensus 308 ePANFLDvGGgV~EdqV~~Af~ilTaDPkVk~iLvNi 344 (412)
T KOG1447|consen 308 EPANFLDVGGGVKEDQVYQAFKILTADPKVKAILVNI 344 (412)
T ss_pred CCcceeeccCcccHHHHHHHhhhhccCCceeEEEEeh
Confidence 46789999999764 3556888899999988774
No 393
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=40.56 E-value=40 Score=23.87 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=22.1
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||.+-+..+..-+--..+++++|..
T Consensus 3 vvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 32 (300)
T TIGR01292 3 VIIIGAGPAGLTAAIYAARANLKTLIIEGM 32 (300)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence 677999988777765544457888999863
No 394
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=40.46 E-value=41 Score=24.02 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
+...|+..|.........++++||+.+++++|-
T Consensus 57 g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 57 GYDLIFGTSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred CCCEEEECchhhhHHHHHHHHHCCCCEEEECCC
Confidence 355677788888889999999999999988874
No 395
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=40.27 E-value=43 Score=25.43 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=19.6
Q ss_pred eEEEecCCCcHHHHH-HHHHC-CCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNM-IISKY-PSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~-l~~~~-P~l~~~v~Dl 107 (118)
+|+=||||..-++.+ .+++. ++.+++|++-
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa 33 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEA 33 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 577799995444443 44443 6678888874
No 396
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=40.18 E-value=56 Score=23.48 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=24.3
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|+=||||..-++.++.-+...++++++|...
T Consensus 24 VvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 24 VIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 7779999887777776666689999998743
No 397
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=40.07 E-value=38 Score=28.04 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=25.8
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||.|-+..++..+--.++++++|.
T Consensus 119 viVIG~G~gG~~aA~~aa~~G~kV~lie~ 147 (659)
T PTZ00153 119 VGIIGCGVGGHAAAINAMERGLKVIIFTG 147 (659)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 77799999999999988888999999884
No 398
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=40.06 E-value=35 Score=27.72 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=25.5
Q ss_pred CCCCceEEEecCC-CcHHHHHHHHHCCCCc
Q 043449 73 FEGLKSVVDVGGG-IGASLNMIISKYPSIK 101 (118)
Q Consensus 73 ~~~~~~vvDvGGg-~G~~~~~l~~~~P~l~ 101 (118)
|+....||-|||| .|.-...++..||+|+
T Consensus 247 ~sdadiVVyigCGERGNEmtevL~eFPeL~ 276 (588)
T COG1155 247 LADGDIVIYVGCGERGNEMTEVLQEFPELK 276 (588)
T ss_pred hccCCEEEEEecCCccchHHHHHHhCcccc
Confidence 6678889999998 6888899999999985
No 399
>PRK08244 hypothetical protein; Provisional
Probab=40.01 E-value=36 Score=26.59 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=24.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.|+=||||..-++.++.-+...++++|+|.
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr 33 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVKTCVIER 33 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 367799998888777776777899999996
No 400
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.96 E-value=47 Score=25.66 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.5
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
||=||||.+-+..+...+--..+++++|...
T Consensus 7 vvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 7 VIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 7779999988887766666688999998643
No 401
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=39.70 E-value=43 Score=25.13 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=23.3
Q ss_pred eEEEecCCCcHHH--HHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASL--NMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~--~~l~~~~P~l~~~v~Dl 107 (118)
.||=||||.+.+. ..+.+..|+.++++++.
T Consensus 4 ~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~ 35 (377)
T PRK04965 4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITA 35 (377)
T ss_pred CEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC
Confidence 5888999988655 44777789999988874
No 402
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=39.69 E-value=33 Score=25.15 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=27.1
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
+...|+-.|......+..+++.||+.+++++|-
T Consensus 61 g~dlIi~~g~~~~~~~~~vA~~yPd~~F~~~d~ 93 (306)
T PF02608_consen 61 GYDLIIGHGFEYSDALQEVAKEYPDTKFIIIDG 93 (306)
T ss_dssp T-SEEEEESGGGHHHHHHHHTC-TTSEEEEESS
T ss_pred CCCEEEEccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 456788888899999999999999999998884
No 403
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=39.59 E-value=40 Score=26.00 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=23.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||.+-+..++.-+.-..+++++|.
T Consensus 8 vvVIGaGpaG~~aA~~la~~G~~v~liE~ 36 (461)
T PRK05249 8 LVVIGSGPAGEGAAMQAAKLGKRVAVIER 36 (461)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 77799998888777766666889999996
No 404
>PRK14694 putative mercuric reductase; Provisional
Probab=39.44 E-value=42 Score=26.13 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=25.2
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
-|+=||||.|-+..++.-+.-..+++++|..
T Consensus 8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 8 HIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 3777999998888887777668899999964
No 405
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=39.39 E-value=1.8e+02 Score=23.52 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=27.2
Q ss_pred HHhcCCCCCCceEEEecCC-CcHHHHHHHHHCCCCc
Q 043449 67 LENYKGFEGLKSVVDVGGG-IGASLNMIISKYPSIK 101 (118)
Q Consensus 67 ~~~~~~~~~~~~vvDvGGg-~G~~~~~l~~~~P~l~ 101 (118)
-..+. ++.....|-.||+ +|.++.=+.++||++.
T Consensus 163 n~k~n-~~~~~~WitFGgSYsGsLsAW~R~~yPel~ 197 (514)
T KOG2182|consen 163 NAKFN-FSDDSKWITFGGSYSGSLSAWFREKYPELT 197 (514)
T ss_pred HhhcC-CCCCCCeEEECCCchhHHHHHHHHhCchhh
Confidence 33455 6666688889998 7899999999999985
No 406
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=39.22 E-value=43 Score=25.36 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=22.8
Q ss_pred ceEEEecCCCcHHHH--HHHHHCCCCcEEEeec
Q 043449 77 KSVVDVGGGIGASLN--MIISKYPSIKGINFDL 107 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~--~l~~~~P~l~~~v~Dl 107 (118)
.+||=||||.+-+.. .|++..++.+++++|-
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~ 36 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSD 36 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 568889999776554 4666778888888763
No 407
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=39.19 E-value=42 Score=25.85 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=23.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.+-+..+..-+--..+++++|.+
T Consensus 4 vvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 4 VVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 677999987777776666668899999863
No 408
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=39.16 E-value=25 Score=24.05 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=23.3
Q ss_pred ecCCCcHHHHHHHHHCCCCcE-EEeechHHhhhCC
Q 043449 82 VGGGIGASLNMIISKYPSIKG-INFDLPHVIQDAP 115 (118)
Q Consensus 82 vGGg~G~~~~~l~~~~P~l~~-~v~Dlp~vi~~a~ 115 (118)
+-||+|.=..-.+.++|.+|+ .+.| |.....++
T Consensus 63 liCGTGiG~siaANKv~GIRAA~~~d-~~sA~~aR 96 (171)
T PRK08622 63 CICGTGVGISNAVNKVPGIRSALVRD-MTSALYAK 96 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEeCC-HHHHHHHH
Confidence 446788877788899999997 5555 55555444
No 409
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=39.13 E-value=47 Score=25.92 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=22.5
Q ss_pred CceEEEecCCCcHHHHHH--HHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMI--ISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l--~~~~P~l~~~v~Dl 107 (118)
..+||=||||.|.+..+. .++.|+.++|+.|.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~ 36 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDR 36 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeC
Confidence 367899999999876553 33223577899884
No 410
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=38.87 E-value=36 Score=25.51 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=12.5
Q ss_pred EEEecCCCcH--HHHHHHHHCC
Q 043449 79 VVDVGGGIGA--SLNMIISKYP 98 (118)
Q Consensus 79 vvDvGGg~G~--~~~~l~~~~P 98 (118)
||=+|||+|. ++..+++..|
T Consensus 1 Iv~lgGGtG~~~lL~GL~~~~~ 22 (303)
T cd07186 1 IVVLSGGTGGAKLLRGLKRVLD 22 (303)
T ss_pred CEEEeCCccHHHHHHHHHhCCC
Confidence 3457777776 5566666554
No 411
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=38.86 E-value=37 Score=26.97 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=22.9
Q ss_pred eEEEecCC-CcHH-HHHHHHHCCCCcEEEeechH
Q 043449 78 SVVDVGGG-IGAS-LNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg-~G~~-~~~l~~~~P~l~~~v~Dlp~ 109 (118)
-||=|||| .|.. +..|++..|..+++|+|...
T Consensus 7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 47779998 4443 33455667999999999754
No 412
>PRK07846 mycothione reductase; Reviewed
Probab=38.77 E-value=38 Score=26.36 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=21.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||.|-+..++.+. ..++.+.|..
T Consensus 4 ~vVIG~G~~g~~aa~~~~--G~~V~lie~~ 31 (451)
T PRK07846 4 LIIIGTGSGNSILDERFA--DKRIAIVEKG 31 (451)
T ss_pred EEEECCCHHHHHHHHHHC--CCeEEEEeCC
Confidence 667999999888877643 7888888753
No 413
>PRK11445 putative oxidoreductase; Provisional
Probab=38.65 E-value=40 Score=25.10 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=22.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|+=||||.+-.+.++.-+.- ++++++|..+
T Consensus 4 V~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 4 VAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred EEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 67799998777666655555 8999999754
No 414
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=38.52 E-value=12 Score=28.13 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=30.7
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCc-EEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIK-GINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-p~vi~~a~~ 116 (118)
+...++-||||.|-+...+.++ +.+- ..+.|. ..|++..++
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~ 163 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQ 163 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHH
Confidence 5688999999999999998887 7775 566665 455655544
No 415
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=38.47 E-value=49 Score=24.92 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.8
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechHH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPHV 110 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~v 110 (118)
.-||-|| |.|......+.+.---|.++||.-.|
T Consensus 85 VAiVGvG-GVGSV~AeMLTRCGIGkLlLfDYDkV 117 (422)
T KOG2336|consen 85 VAIVGVG-GVGSVTAEMLTRCGIGKLLLFDYDKV 117 (422)
T ss_pred eEEEecC-chhHHHHHHHHhcCcceEEEeecchh
Confidence 4578887 69999999999998889999997554
No 416
>PRK13748 putative mercuric reductase; Provisional
Probab=38.43 E-value=42 Score=26.64 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=25.8
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
-||=||||.|-+..++..+.-..++.++|..
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3777999999988888777778899999864
No 417
>PRK08233 hypothetical protein; Provisional
Probab=38.33 E-value=33 Score=22.50 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=16.9
Q ss_pred CCcHHHHHHHHHCCCCcEEEee
Q 043449 85 GIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 85 g~G~~~~~l~~~~P~l~~~v~D 106 (118)
|-.+++..|+++.+..+++.+|
T Consensus 15 GKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 15 GKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred CHHHHHHHHHhhCCCCceEEEC
Confidence 4446889999999887776665
No 418
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=38.23 E-value=44 Score=25.46 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=24.6
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||..-.+.+..-+-..++++++|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecC
Confidence 4677999988888887777778999998863
No 419
>PRK10262 thioredoxin reductase; Provisional
Probab=38.10 E-value=46 Score=24.26 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=22.3
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
...|+=||||.+-+..++.-+.-..+.+++|.
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~ 37 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITG 37 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence 45688899998887777644333567777764
No 420
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=38.01 E-value=43 Score=25.31 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=26.4
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||..-++.+++-+.-.++++|+|.-
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 35788999988888887777777999999973
No 421
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=37.87 E-value=72 Score=23.51 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=25.9
Q ss_pred CCceEEEecCCCc-----------HHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIG-----------ASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G-----------~~~~~l~~~~P~l~~~v~Dl 107 (118)
+...++..|.+.+ .+...++++||++++|+--.
T Consensus 157 gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~ 200 (293)
T COG2159 157 GVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHM 200 (293)
T ss_pred CCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEec
Confidence 3566778888666 68889999999999877543
No 422
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=37.66 E-value=40 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=25.7
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEee
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFD 106 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 106 (118)
..||=||||.+-++.++.-+...++++++|
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~ 241 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVA 241 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 458889999999999988888889988876
No 423
>PTZ00052 thioredoxin reductase; Provisional
Probab=37.59 E-value=45 Score=26.37 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||.+-+..++..+.-..+++++|.
T Consensus 8 viVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 8 LVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 77799999999999888888999999994
No 424
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=37.58 E-value=59 Score=20.61 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcchhhHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc-EEEeechHH
Q 043449 47 YNKIFNNGMFSHSTITMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK-GINFDLPHV 110 (118)
Q Consensus 47 ~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dlp~v 110 (118)
+..+|..+|.......+-.+++..|--+=..+||-.-||+|.++ +-+ .|.+|.|..
T Consensus 48 r~~rf~~~kk~vn~n~~m~LI~e~Pp~e~d~RVV~CdGg~~aLG--------HPkvyInLDk~~~ 104 (120)
T KOG3456|consen 48 RGNRFVKWKKDVNENSAMELISEVPPIEVDGRVVACDGGTPALG--------HPKVYINLDKPGP 104 (120)
T ss_pred hHHHHHhhhhhcCccchhhhhhcCChhhccceEEEecCCCCCCC--------CCeEEEEcCCCCC
Confidence 45689999988877554445554441222477888888888765 444 378888764
No 425
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=37.48 E-value=50 Score=24.74 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=21.4
Q ss_pred EEEecCCCcHHHHHHHHH--CCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISK--YPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~--~P~l~~~v~Dlp 108 (118)
|+=||||.+-++.++.-+ .|+++++++|.-
T Consensus 4 v~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~ 35 (403)
T PRK07333 4 VVIAGGGYVGLALAVALKQAAPHLPVTVVDAA 35 (403)
T ss_pred EEEECccHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 666999987665554333 367999999973
No 426
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=37.30 E-value=42 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=22.8
Q ss_pred eEEEecCC-CcHHHH-HHHHHCCCCcEEEeec-hHH
Q 043449 78 SVVDVGGG-IGASLN-MIISKYPSIKGINFDL-PHV 110 (118)
Q Consensus 78 ~vvDvGGg-~G~~~~-~l~~~~P~l~~~v~Dl-p~v 110 (118)
-||=|||| .|.-+. .|.+..|..+++|++. ..+
T Consensus 8 DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred CEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 37789999 454444 4555558999999998 533
No 427
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=37.28 E-value=32 Score=23.84 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=26.1
Q ss_pred CCceEEEecCCCcH----HHHHHHHH---CC--CCcEEEeec-hHHhhhCCC
Q 043449 75 GLKSVVDVGGGIGA----SLNMIISK---YP--SIKGINFDL-PHVIQDAPA 116 (118)
Q Consensus 75 ~~~~vvDvGGg~G~----~~~~l~~~---~P--~l~~~v~Dl-p~vi~~a~~ 116 (118)
+.-+|...||++|. +++.+.+. .. ..+++.-|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 45789999999997 33334441 12 356677787 778877753
No 428
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=37.19 E-value=18 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.3
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-.++|||||-|.
T Consensus 189 ~~~lDiGGGf~v 200 (346)
T cd06829 189 LKWLNLGGGHHI 200 (346)
T ss_pred CcEEEcCCCcCC
Confidence 569999999875
No 429
>PTZ00058 glutathione reductase; Provisional
Probab=37.15 E-value=41 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.1
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
||=||||.|.+..++..+.-..+++++|.
T Consensus 51 vvVIG~G~aG~~aA~~aa~~G~~ValIEk 79 (561)
T PTZ00058 51 LIVIGGGSGGMAAARRAARNKAKVALVEK 79 (561)
T ss_pred EEEECcCHHHHHHHHHHHHcCCeEEEEec
Confidence 77799999998888888877899988885
No 430
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=37.07 E-value=46 Score=26.39 Aligned_cols=32 Identities=16% Similarity=0.015 Sum_probs=25.2
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||..-++.++.-+..+++++|+|.-
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~ 42 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERW 42 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 45788999988877776666668999999864
No 431
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=37.07 E-value=1e+02 Score=24.15 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHhcCCCCCCceEEEecCCCcHHHHHHHHHC-CCCcEEEeech
Q 043449 66 FLENYKGFEGLKSVVDVGGGIGASLNMIISKY-PSIKGINFDLP 108 (118)
Q Consensus 66 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dlp 108 (118)
+...++.+...-.++=+||++|.++..|+.+. |.+--.|.|-.
T Consensus 173 l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns 216 (403)
T PF11144_consen 173 LKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNS 216 (403)
T ss_pred HHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecC
Confidence 44455534443456668999999999887775 88766777743
No 432
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=36.30 E-value=47 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.076 Sum_probs=26.0
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..|+=||||..-++.++.-+...++++|+|.-
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~ 55 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDD 55 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 45888999988888887766678999999964
No 433
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=36.26 E-value=48 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=23.5
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||..-.+.+..-+..+++++++|.-
T Consensus 3 VvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 3 VAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 677999987777776666668999999863
No 434
>PRK14727 putative mercuric reductase; Provisional
Probab=36.06 E-value=50 Score=25.85 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=26.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.||-||+|.|-+..+..-+.-..+++++|..
T Consensus 18 dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~ 48 (479)
T PRK14727 18 HVAIIGSGSAAFAAAIKAAEHGARVTIIEGA 48 (479)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4888999999998888877778899888864
No 435
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=36.05 E-value=43 Score=26.15 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCc---EEEeechHH
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIK---GINFDLPHV 110 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~---~~v~Dlp~v 110 (118)
......++|+|+|.|.....++.---.-+ +-+.|-|.-
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~ 230 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQ 230 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHH
Confidence 44567899999999998776654433222 445555543
No 436
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=35.85 E-value=21 Score=27.13 Aligned_cols=12 Identities=50% Similarity=0.750 Sum_probs=9.9
Q ss_pred CCceEEEecCCC
Q 043449 75 GLKSVVDVGGGI 86 (118)
Q Consensus 75 ~~~~vvDvGGg~ 86 (118)
...-|||||||+
T Consensus 153 ~G~mvvDIGgGT 164 (342)
T COG1077 153 TGSMVVDIGGGT 164 (342)
T ss_pred CCCEEEEeCCCc
Confidence 347899999996
No 437
>PLN02507 glutathione reductase
Probab=35.84 E-value=50 Score=26.12 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=25.4
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||.|-+..++..+.-.+++.++|.
T Consensus 28 vvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 28 LFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 77799999988888888888899999985
No 438
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=35.66 E-value=15 Score=18.91 Aligned_cols=10 Identities=50% Similarity=0.697 Sum_probs=5.6
Q ss_pred HHHHHCCCCc
Q 043449 92 MIISKYPSIK 101 (118)
Q Consensus 92 ~l~~~~P~l~ 101 (118)
+++++||+++
T Consensus 21 ~IL~k~PeIk 30 (39)
T PF08557_consen 21 EILKKHPEIK 30 (39)
T ss_pred HHHHhChHHH
Confidence 4556666554
No 439
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=35.56 E-value=26 Score=23.23 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHCCCCcEEEeechHHhhhCC
Q 043449 84 GGIGASLNMIISKYPSIKGINFDLPHVIQDAP 115 (118)
Q Consensus 84 Gg~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 115 (118)
||+|.=..-.+.++|++|+.+.-=+...+.++
T Consensus 63 CGtGiG~siaANK~~GIRAA~~~d~~~A~~ar 94 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMIAAEVSDERSAYMTR 94 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHH
Confidence 45666666677999999975444455555443
No 440
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=35.22 E-value=21 Score=27.11 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=10.3
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-.++|||||-|.
T Consensus 208 ~~~IDiGGGf~v 219 (379)
T cd06836 208 ITRIDIGGGLPV 219 (379)
T ss_pred CcEEEeCCcccc
Confidence 679999999973
No 441
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.14 E-value=46 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=23.4
Q ss_pred eEEEecCCCcHHHHHH--HHHCCCCcEEEeechH
Q 043449 78 SVVDVGGGIGASLNMI--ISKYPSIKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l--~~~~P~l~~~v~Dlp~ 109 (118)
+|+=||||.+-++.++ .++.|+++++|+|.-.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 4677999987766665 3444689999999643
No 442
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.95 E-value=93 Score=22.51 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCceEEEecCCCcHHHHHHHHHCCCC-cEEEeechH
Q 043449 74 EGLKSVVDVGGGIGASLNMIISKYPSI-KGINFDLPH 109 (118)
Q Consensus 74 ~~~~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dlp~ 109 (118)
-+.++++|||.=+|.-+.+++.+-|.= +.+-+|.+.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~ 108 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA 108 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh
Confidence 357899999999999999999999883 457777643
No 443
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=34.92 E-value=51 Score=24.62 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=21.3
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
|+=||||..-++.+..-+...++++++|.
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~ 30 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEP 30 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEcc
Confidence 56689988777766555556888888884
No 444
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=34.83 E-value=19 Score=23.24 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=9.0
Q ss_pred CCceEEEecCC
Q 043449 75 GLKSVVDVGGG 85 (118)
Q Consensus 75 ~~~~vvDvGGg 85 (118)
...-.||||||
T Consensus 56 ~~~gkV~lGGG 66 (126)
T PF12757_consen 56 ENAGKVNLGGG 66 (126)
T ss_pred cCCCeeeCCCC
Confidence 45679999998
No 445
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.46 E-value=48 Score=24.96 Aligned_cols=30 Identities=13% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCCceEEEecC--CCcH-HHHHHHHHCCCCcE
Q 043449 73 FEGLKSVVDVGG--GIGA-SLNMIISKYPSIKG 102 (118)
Q Consensus 73 ~~~~~~vvDvGG--g~G~-~~~~l~~~~P~l~~ 102 (118)
+++..-++=||| -+|+ +..+++.+||++||
T Consensus 66 y~~~mplIFiGGVPRSGTTLMRAmLDAHPdVRC 98 (378)
T KOG3988|consen 66 YNRTMPLIFIGGVPRSGTTLMRAMLDAHPDVRC 98 (378)
T ss_pred hcccCceEEEcCCCCCchHHHHHHHhcCCCccc
Confidence 556666888998 3454 67789999999997
No 446
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=34.40 E-value=54 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=25.6
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
-.|+=||||..-.+.++.-+...++++++|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 34788999988888887777778999999863
No 447
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=33.97 E-value=57 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.033 Sum_probs=25.1
Q ss_pred CceEEEecCCCcHHHHHHHHHC-CCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKY-PSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl 107 (118)
...|+=||||..-++.++.-+. ++++++|+|.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 3458889999887777766665 7999999995
No 448
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=33.87 E-value=77 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCceEEEecCCCcH----HHHHHHHHCCCCcEEEee
Q 043449 75 GLKSVVDVGGGIGA----SLNMIISKYPSIKGINFD 106 (118)
Q Consensus 75 ~~~~vvDvGGg~G~----~~~~l~~~~P~l~~~v~D 106 (118)
+..-++|||||.-. -+..+..+.|++++++.+
T Consensus 317 ~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliN 352 (422)
T PLN00124 317 SPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVN 352 (422)
T ss_pred CcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 46789999998665 345567778999988764
No 449
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=33.83 E-value=22 Score=26.83 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=10.2
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-.++|||||-|.
T Consensus 204 ~~~idiGGG~~~ 215 (379)
T cd06841 204 LEYLDLGGGFPA 215 (379)
T ss_pred CCEEEeCCCcCc
Confidence 579999999865
No 450
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=33.81 E-value=58 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=23.1
Q ss_pred EEEecCCCcHHHHHHHHHCCC-CcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPS-IKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dlp~ 109 (118)
||=||||..-++.++..+-.. .+++|+|.-.
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~ 33 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKMP 33 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcCCccEEEEecCC
Confidence 566999977777777666667 8898888643
No 451
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=33.72 E-value=53 Score=25.40 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=24.1
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||..-++.++..+-..++++|+|.-
T Consensus 7 VvVVG~G~aGl~AA~~aa~~G~~V~vlEk~ 36 (466)
T PRK08274 7 VLVIGGGNAALCAALAAREAGASVLLLEAA 36 (466)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 777999987777777777778899998864
No 452
>PRK06834 hypothetical protein; Provisional
Probab=33.51 E-value=55 Score=25.81 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=25.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.|+=||||..-++.++.-+...++++|+|.-
T Consensus 5 dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~ 35 (488)
T PRK06834 5 AVVIAGGGPTGLMLAGELALAGVDVAIVERR 35 (488)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4778999988777777666678999999964
No 453
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=33.42 E-value=64 Score=25.93 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=25.6
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
.-||=||+|.+-++.++..+--.++++|+|.-
T Consensus 8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~ 39 (557)
T PRK07843 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKA 39 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34788999988888887666678999998863
No 454
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=33.36 E-value=59 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCCCceEEEecCC-CcHHHHHHHHHCCCCcEEE
Q 043449 73 FEGLKSVVDVGGG-IGASLNMIISKYPSIKGIN 104 (118)
Q Consensus 73 ~~~~~~vvDvGGg-~G~~~~~l~~~~P~l~~~v 104 (118)
+++...|+-|||| .|.-..+++..||+|..-+
T Consensus 268 YSNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev 300 (618)
T KOG1352|consen 268 YSNSDAIIYVGCGERGNEMSEVLMDFPELTMEV 300 (618)
T ss_pred ccCCCeEEEEcccccchhHHHHHHhChhhEEec
Confidence 4566789999998 7999999999999998633
No 455
>PRK05354 arginine decarboxylase; Provisional
Probab=33.15 E-value=58 Score=26.96 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=10.2
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-..+|||||-|.
T Consensus 284 l~~LDIGGGlgV 295 (634)
T PRK05354 284 IQYLDVGGGLGV 295 (634)
T ss_pred CCEEEeCCCcCc
Confidence 579999999874
No 456
>PLN02697 lycopene epsilon cyclase
Probab=32.95 E-value=53 Score=26.44 Aligned_cols=30 Identities=13% Similarity=-0.059 Sum_probs=25.2
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
-|+=||||..-++.+..-+.+.++++++|.
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~ 139 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGP 139 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEecC
Confidence 467799999989888877788999988874
No 457
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=32.90 E-value=25 Score=26.81 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=10.7
Q ss_pred CceEEEecCCCcH
Q 043449 76 LKSVVDVGGGIGA 88 (118)
Q Consensus 76 ~~~vvDvGGg~G~ 88 (118)
.-.++|||||-|.
T Consensus 192 ~~~~iDiGGGfgv 204 (380)
T TIGR01047 192 QMDWVNFGGGHHI 204 (380)
T ss_pred CCCEEEeCCCcCC
Confidence 3679999999865
No 458
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=32.87 E-value=93 Score=26.07 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc-EEEeechHH
Q 043449 65 KFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK-GINFDLPHV 110 (118)
Q Consensus 65 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dlp~v 110 (118)
.+-+.|.-+.....|+|+|+..|..+.-.++..|--+ ++..||-++
T Consensus 34 Qln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 34 QLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred HHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 3445566235678899999999999999999999555 577887554
No 459
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=32.77 E-value=1.7e+02 Score=20.29 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=18.0
Q ss_pred EEe--cCCCcH-HHHHHHHHCCCCcEEEe
Q 043449 80 VDV--GGGIGA-SLNMIISKYPSIKGINF 105 (118)
Q Consensus 80 vDv--GGg~G~-~~~~l~~~~P~l~~~v~ 105 (118)
+|+ .+..|. +...+.+.+|+++++++
T Consensus 46 ~d~~mp~~~Gl~~~~~l~~~~p~~~iIvl 74 (207)
T PRK11475 46 SAMRSERREGLSCLTELAIKFPRMRRLVI 74 (207)
T ss_pred cccCCCCCCHHHHHHHHHHHCCCCCEEEE
Confidence 476 344565 55567788999998665
No 460
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=32.73 E-value=60 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.1
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..||=||||.|.+..+...+.-..+++++|..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~ 33 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD 33 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 35788999998888887666667888888854
No 461
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=32.73 E-value=1.2e+02 Score=18.64 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=28.5
Q ss_pred hHHHHHHhcCCCCCCceEEEecCCCcHHHHHHHHHCCCCc
Q 043449 62 TMKKFLENYKGFEGLKSVVDVGGGIGASLNMIISKYPSIK 101 (118)
Q Consensus 62 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~ 101 (118)
....+++.|+ -.++-.|=|=|-..=..=.+++++||+--
T Consensus 54 ~i~~i~~~fP-~~kfiLIGDsgq~DpeiY~~ia~~~P~~i 92 (100)
T PF09949_consen 54 NIERILRDFP-ERKFILIGDSGQHDPEIYAEIARRFPGRI 92 (100)
T ss_pred HHHHHHHHCC-CCcEEEEeeCCCcCHHHHHHHHHHCCCCE
Confidence 3556777787 55566666777777777888999999853
No 462
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=32.68 E-value=64 Score=26.17 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|....-||=||+|..-++.++..+-..++++|++.-.
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~ 44 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSA 44 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4444457889999998988888888889999988543
No 463
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=32.61 E-value=41 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=21.1
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|+=||||.--+..|+..+...++++|+|.-+
T Consensus 3 viIIGgGaAGl~aA~~aa~~g~~V~vlE~~~ 33 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITAAEKGARVLVLERNK 33 (409)
T ss_dssp EEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 6679999888888888888899999999743
No 464
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=32.61 E-value=49 Score=25.72 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=21.6
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||+|.|.+..+..+. +.++.+.|..
T Consensus 5 ~vvIG~G~~g~~aa~~~~--g~~V~lie~~ 32 (452)
T TIGR03452 5 LIIIGTGSGNSIPDPRFA--DKRIAIVEKG 32 (452)
T ss_pred EEEECCCHHHHHHHHHHC--CCeEEEEeCC
Confidence 677999998888776553 8888888853
No 465
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=32.27 E-value=21 Score=22.22 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=17.5
Q ss_pred EEEecCCCcHHHHHHHHH-CCCCcE----EEeec
Q 043449 79 VVDVGGGIGASLNMIISK-YPSIKG----INFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~-~P~l~~----~v~Dl 107 (118)
=+|||+|.|....+-.+. -++-.. +..||
T Consensus 6 NIDIGcG~GNTmda~fRsct~htSyYy~S~~~Dl 39 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTSYYYLSTNHDL 39 (124)
T ss_pred ccccccCCCcchhhhhhccccccceEEEeecccc
Confidence 379999999866554333 344332 55555
No 466
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=32.23 E-value=47 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=23.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechHH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPHV 110 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~v 110 (118)
||=||||..-+..++..+-..++++|++--..
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 56799999888888887778889999986543
No 467
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=32.16 E-value=67 Score=25.25 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=25.3
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..+|+=||+|..-++.+..-+--.+++++|+.-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~ 42 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFERE 42 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecC
Confidence 467999999988777775555557899999864
No 468
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=32.10 E-value=24 Score=27.15 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=10.4
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-.++|||||-|.
T Consensus 225 l~~iDiGGGf~v 236 (409)
T cd06830 225 LRYLDIGGGLGV 236 (409)
T ss_pred CcEEEcCCCccc
Confidence 679999999875
No 469
>PRK10015 oxidoreductase; Provisional
Probab=32.10 E-value=62 Score=25.01 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=23.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
|+=||||..-.+.++.-+...++++++|..
T Consensus 8 ViIVGgGpAG~~aA~~LA~~G~~VlliEr~ 37 (429)
T PRK10015 8 AIVVGAGVAGSVAALVMARAGLDVLVIERG 37 (429)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 777999977777776666678999999864
No 470
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=32.09 E-value=65 Score=28.26 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=25.9
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..+|+=||||.+-++.+..-+.-+.+++|+|.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek 568 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEK 568 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 35789999999888877666666889999985
No 471
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=31.85 E-value=22 Score=26.46 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=9.8
Q ss_pred EEEecCCCcH--HHHHHHHH
Q 043449 79 VVDVGGGIGA--SLNMIISK 96 (118)
Q Consensus 79 vvDvGGg~G~--~~~~l~~~ 96 (118)
||=+|||+|. ++.++++.
T Consensus 1 Ivvl~GGtG~~~ll~gL~~~ 20 (300)
T PF01933_consen 1 IVVLGGGTGLSKLLRGLKRV 20 (300)
T ss_dssp EEEEE-SCHHHHHHHHHTTS
T ss_pred CEEEeCcccHHHHHHHHHHh
Confidence 4667888886 33444444
No 472
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=31.69 E-value=49 Score=19.65 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=4.7
Q ss_pred HHHHHHCCC
Q 043449 91 NMIISKYPS 99 (118)
Q Consensus 91 ~~l~~~~P~ 99 (118)
..+.+.+|+
T Consensus 46 ~~~~~~~~~ 54 (109)
T PF00175_consen 46 EALAQEYPN 54 (109)
T ss_dssp HHHHHHSTT
T ss_pred HHHHhhccc
Confidence 445555555
No 473
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=31.67 E-value=76 Score=24.65 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=23.9
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..+|+=||||.+.+..+..-+-.+.+++++|.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~ 164 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEA 164 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 46799999997776665544445788999985
No 474
>PTZ00010 tubulin beta chain; Provisional
Probab=31.58 E-value=99 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=24.7
Q ss_pred HHhcCCCCCCceEEEecCCCcH-----HHHHHHHHCCCC
Q 043449 67 LENYKGFEGLKSVVDVGGGIGA-----SLNMIISKYPSI 100 (118)
Q Consensus 67 ~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 100 (118)
++..|.+.++..+-.+|||+|. ++..|...||..
T Consensus 124 ~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~ 162 (445)
T PTZ00010 124 AESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDR 162 (445)
T ss_pred hhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCcc
Confidence 4445556778899999999974 445677888864
No 475
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=31.56 E-value=33 Score=22.72 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHCCCCcE-EEeechHHhhhC
Q 043449 84 GGIGASLNMIISKYPSIKG-INFDLPHVIQDA 114 (118)
Q Consensus 84 Gg~G~~~~~l~~~~P~l~~-~v~Dlp~vi~~a 114 (118)
||+|.=..-.+.++|.+|+ ++.| +.....+
T Consensus 62 CGtGiG~siaANKv~GIRaA~~~d-~~~A~~a 92 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMVAAEVSD-ERSAYMT 92 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECC-HHHHHHH
Confidence 4577666667899999997 4455 4444443
No 476
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=31.50 E-value=26 Score=26.88 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=9.4
Q ss_pred ceEEEecCCCc
Q 043449 77 KSVVDVGGGIG 87 (118)
Q Consensus 77 ~~vvDvGGg~G 87 (118)
-.++|||||-|
T Consensus 204 l~~ldiGGGf~ 214 (394)
T cd06831 204 MNMLDIGGGFT 214 (394)
T ss_pred CCEEEeCCCcC
Confidence 57999999974
No 477
>PTZ00367 squalene epoxidase; Provisional
Probab=31.44 E-value=59 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=26.2
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..|+=||||.+-.+.+++-+..+.+++|+|.
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 3578899999988888877778899999986
No 478
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.21 E-value=57 Score=26.48 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=23.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
||=||||..-+..++..+...++++|++-.
T Consensus 15 VlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 15 VVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 777999977777777777778899988863
No 479
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=31.05 E-value=89 Score=21.82 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=22.8
Q ss_pred CceEEEec--CCCcHHHH--HHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVG--GGIGASLN--MIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvG--Gg~G~~~~--~l~~~~P~l~~~v~Dl 107 (118)
.-.++|+. |..|.-.. .+.+.+|+++++++--
T Consensus 54 DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~ 89 (216)
T PRK10100 54 SIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNT 89 (216)
T ss_pred CEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEEC
Confidence 46799997 45777553 4677899999877653
No 480
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=30.38 E-value=57 Score=23.45 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=23.7
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
|+=||||.--.+.+..-+.+..+++++|...
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 5669999776666655555899999999763
No 481
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=30.28 E-value=69 Score=26.45 Aligned_cols=12 Identities=58% Similarity=1.085 Sum_probs=10.3
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-.++|||||-|.
T Consensus 277 l~~LDIGGGlgV 288 (624)
T TIGR01273 277 ITYVDVGGGLGV 288 (624)
T ss_pred CCEEEeCCCcCC
Confidence 679999999873
No 482
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=30.25 E-value=64 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=25.0
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..+++|+=+|+|.++.+-+.+.-. +++..|.
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~ 74 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAA-RVVFVEK 74 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCc-eEEEEec
Confidence 589999999999999999988543 4566664
No 483
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=30.18 E-value=77 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.9
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.-||=||||..-++.++..+...++++|++.-.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 347789999888888888888889999988644
No 484
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=30.18 E-value=62 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=27.8
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
..|+=||||..-++.++..+-+.++++++|-
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~ 194 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDE 194 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 4688899999999999988889999999985
No 485
>PLN02439 arginine decarboxylase
Probab=30.14 E-value=71 Score=26.01 Aligned_cols=12 Identities=50% Similarity=1.140 Sum_probs=10.2
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-..+|||||-|.
T Consensus 221 l~~lDIGGGlgV 232 (559)
T PLN02439 221 MRVIDIGGGLGI 232 (559)
T ss_pred CcEEEecCCccc
Confidence 579999999873
No 486
>PRK07233 hypothetical protein; Provisional
Probab=30.07 E-value=68 Score=24.12 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=21.0
Q ss_pred eEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 78 SVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 78 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
+|+=||||.+-++.+..-+.-+.+++|+|.-.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 36779999766666633333467888887543
No 487
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=29.97 E-value=62 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=23.8
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
||=||||..-++.++..+-..++++|++-..
T Consensus 2 VlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 2 VVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 5668999877777777776788988888643
No 488
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=29.84 E-value=79 Score=22.11 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=24.7
Q ss_pred CCceEEEecCCCcH-------HHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGA-------SLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~-------~~~~l~~~~P~l~~~v~Dl 107 (118)
..-.+||+.|+--. ++.++.+.++.+++++|+-
T Consensus 59 ~lvvl~DvSGSM~~~s~~~l~~~~~l~~~~~~~~~f~F~~ 98 (222)
T PF05762_consen 59 RLVVLCDVSGSMAGYSEFMLAFLYALQRQFRRVRVFVFST 98 (222)
T ss_pred cEEEEEeCCCChHHHHHHHHHHHHHHHHhCCCEEEEEEee
Confidence 35679999998544 4556777888888888883
No 489
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.82 E-value=82 Score=24.58 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=22.9
Q ss_pred EEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 79 VVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 79 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
++-||||+|-++.+=-.+-=..++.++|.
T Consensus 22 LIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 22 LIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred EEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 55699999999988666666677888875
No 490
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=29.77 E-value=78 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=24.0
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..+|+=||||.+-+..+..-+-...+++++|..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~ 172 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEAR 172 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Confidence 467999999977666665444456889999864
No 491
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=29.70 E-value=87 Score=24.48 Aligned_cols=33 Identities=21% Similarity=0.043 Sum_probs=25.5
Q ss_pred CceEEEecCCCcHHHHHHHHHCCCCcEEEeech
Q 043449 76 LKSVVDVGGGIGASLNMIISKYPSIKGINFDLP 108 (118)
Q Consensus 76 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp 108 (118)
..+|+=||||...+..+..-+....+++++|..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecC
Confidence 457999999977777766556668899999864
No 492
>PRK06153 hypothetical protein; Provisional
Probab=29.60 E-value=96 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=24.7
Q ss_pred ceEEEecC-CCcHHHHHHHHHCCCCcEEEeec
Q 043449 77 KSVVDVGG-GIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 77 ~~vvDvGG-g~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
.+|+=||+ |.|......+.+.+=-+.+++|-
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 35666665 69999999999988888999994
No 493
>PF14881 Tubulin_3: Tubulin domain
Probab=29.53 E-value=85 Score=21.46 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCCceEEEecCCCcHHHHH----HHHHCCCCcE
Q 043449 63 MKKFLENYKGFEGLKSVVDVGGGIGASLNM----IISKYPSIKG 102 (118)
Q Consensus 63 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~----l~~~~P~l~~ 102 (118)
....++..|.+.++..++|+-+|-|.++.. |...||+...
T Consensus 64 lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i 107 (180)
T PF14881_consen 64 LRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPI 107 (180)
T ss_pred HHHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCce
Confidence 345677788678899999997777776655 5556888774
No 494
>PRK12831 putative oxidoreductase; Provisional
Probab=29.51 E-value=88 Score=24.51 Aligned_cols=33 Identities=15% Similarity=-0.055 Sum_probs=24.0
Q ss_pred CCceEEEecCCCcHHHHHHHHHCCCCcEEEeec
Q 043449 75 GLKSVVDVGGGIGASLNMIISKYPSIKGINFDL 107 (118)
Q Consensus 75 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 107 (118)
....|+=||||...++.+..-+--+.+++++|.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999997766666444445788999985
No 495
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.30 E-value=66 Score=24.61 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=25.1
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.-|+-+|| -|+++..++++. ..|++++|..+
T Consensus 185 vgI~GlGG-LGh~aVq~AKAM-G~rV~vis~~~ 215 (360)
T KOG0023|consen 185 VGIVGLGG-LGHMAVQYAKAM-GMRVTVISTSS 215 (360)
T ss_pred EEEecCcc-cchHHHHHHHHh-CcEEEEEeCCc
Confidence 34666776 999999999997 57899998763
No 496
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=29.29 E-value=63 Score=26.01 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=26.1
Q ss_pred ceEEEecCCCcHHHHHHHHHCCCCcEEEeechH
Q 043449 77 KSVVDVGGGIGASLNMIISKYPSIKGINFDLPH 109 (118)
Q Consensus 77 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dlp~ 109 (118)
.-||=||+|..-++.++..+-..++++|+|.-.
T Consensus 10 ~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~ 42 (574)
T PRK12842 10 CDVLVIGSGAGGLSAAITARKLGLDVVVLEKEP 42 (574)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 347789999988888887777788999988643
No 497
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=29.22 E-value=29 Score=26.24 Aligned_cols=12 Identities=42% Similarity=1.027 Sum_probs=10.2
Q ss_pred ceEEEecCCCcH
Q 043449 77 KSVVDVGGGIGA 88 (118)
Q Consensus 77 ~~vvDvGGg~G~ 88 (118)
-.++|||||-|.
T Consensus 206 ~~~idiGGGf~~ 217 (368)
T cd06840 206 VRILNVGGGLGI 217 (368)
T ss_pred CCEEEecCcccC
Confidence 579999999865
No 498
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=29.17 E-value=1.1e+02 Score=21.04 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=21.6
Q ss_pred CceEEE----ecCCCc-HHHHHHHHHCCCCcEEEe
Q 043449 76 LKSVVD----VGGGIG-ASLNMIISKYPSIKGINF 105 (118)
Q Consensus 76 ~~~vvD----vGGg~G-~~~~~l~~~~P~l~~~v~ 105 (118)
.-.++| +-+..| ..+..+.+.+|+++.+++
T Consensus 49 DlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivl 83 (207)
T PRK15411 49 SVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVF 83 (207)
T ss_pred CEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEE
Confidence 467899 544333 366778888999998777
No 499
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=29.16 E-value=29 Score=26.20 Aligned_cols=13 Identities=62% Similarity=0.956 Sum_probs=10.6
Q ss_pred CceEEEecCCCcH
Q 043449 76 LKSVVDVGGGIGA 88 (118)
Q Consensus 76 ~~~vvDvGGg~G~ 88 (118)
.-.++|||||-|.
T Consensus 204 ~~~~idiGGGf~~ 216 (377)
T cd06843 204 DLDVVNVGGGIGV 216 (377)
T ss_pred CCcEEEecCcccc
Confidence 3679999999865
No 500
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=29.14 E-value=26 Score=27.71 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCCCceEEEecCCCcHHHHHHHHHCCCCcEEEeec-hHHhh
Q 043449 73 FEGLKSVVDVGGGIGASLNMIISKYPSIKGINFDL-PHVIQ 112 (118)
Q Consensus 73 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-p~vi~ 112 (118)
|.....|+|+=+|.|-+++-.+++. ++++..|| |+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik 285 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIK 285 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHH
Confidence 4456789999999999999988886 99999998 77665
Done!