BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043450
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 353 IREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKN 412
IR +P ++ L +LK L + + +L + L L++LD+R C LR P G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 413 MRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESL 460
++ L+ D S+L LP+ I RLT LEK + G V N RL SL
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQ---LEKLDLRGCV---NLSRLPSL 296
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 349 DLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIG 408
D + E+P+ ++ L+ L L+ + +LP ++ L L++L IR C +L ELP +
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 409 K---------LKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLES 459
L N++S L + + ++ LP I+ L +L++L+ G L
Sbjct: 172 STDASGEHQGLVNLQS-LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230
Query: 460 LKNLQLLRECRVEGLSNVSHV----DEAERLQLYNKKNLLRLGLQFGRV 504
L+ L LR C L N + +RL L + NLL L L R+
Sbjct: 231 LEELD-LRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 355 EIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMR 414
+ P+ +L HL++ + + LP+T + L+ L + R LR LP I L +R
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLR 153
Query: 415 SL 416
L
Sbjct: 154 EL 155
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 21/119 (17%)
Query: 327 LFSKLACLRALVISQPSPIFRPDLNLIREIPENV-EKLIHLKYLNLSGLRIESLPETLCE 385
+F KL L+ LV+ + N ++ +P+ V +KL +L YLNL+ +++SLP+ + +
Sbjct: 104 VFDKLTNLKELVLVE---------NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154
Query: 386 -LYNLQKLDIRRCQDLRELPTGI----GKLKNMRSLLNGDTSSLKYLPIGI-SRLTSLR 438
L NL +LD+ Q L+ LP G+ +LK++R N LK +P G+ RLTSL+
Sbjct: 155 KLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN----QLKSVPDGVFDRLTSLQ 208
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 360 VEKLIHLKYLNLSGLRIESLPETLCE-LYNLQKLDIRRCQDLRELPTGI-GKLKNMRSLL 417
+++L +L YL L+G +++SLP + + L NL++L + Q L+ LP G+ KL N+ + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNL-TYL 138
Query: 418 NGDTSSLKYLPIGI-SRLTSLRTLE 441
N + L+ LP G+ +LT+L L+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELD 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 379 LPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGI-SRLTSL 437
LP+ EL NL LD+ +CQ + PT L +++ +LN ++ LK +P GI RLTSL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDRLTSL 520
Query: 438 RTL 440
+ +
Sbjct: 521 QKI 523
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 342 PSPIFRPDL--NLIREIPENV-EKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQ 398
PS R +L N ++ +P V +KL L L+LS +I+SLP+ + L KL I
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--FDKLTKLTILYLH 84
Query: 399 D--LRELPTGI-GKLKNMRSLLNGDTSSLKYLPIGI-SRLTSLRTL 440
+ L+ LP G+ KL ++ L DT+ LK +P GI RLTSL+ +
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELA-LDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 12/95 (12%)
Query: 351 NLIREIPENV-EKLIHLKYLNLSGLRIESLPETLCE-LYNLQKLDIRRCQDLRELPTGI- 407
N ++ +P V KL L YLNLS +++SLP + + L L++L + Q L+ LP G+
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVF 120
Query: 408 ---GKLKNMRSLLNGDTSSLKYLPIGI-SRLTSLR 438
+LK++R N LK +P G+ RLTSL+
Sbjct: 121 DKLTQLKDLRLYQN----QLKSVPDGVFDRLTSLQ 151
>pdb|2V2Q|A Chain A, Ispe In Complex With Ligand
pdb|2V2Q|B Chain B, Ispe In Complex With Ligand
pdb|2V2V|A Chain A, Ispe In Complex With Ligand
pdb|2V2V|B Chain B, Ispe In Complex With Ligand
pdb|2V2Z|A Chain A, Ispe In Complex With Adp And Cdpme
pdb|2V2Z|B Chain B, Ispe In Complex With Adp And Cdpme
pdb|2V34|A Chain A, Ispe In Complex With Cytidine And Ligand
pdb|2V34|B Chain B, Ispe In Complex With Cytidine And Ligand
pdb|2V8P|A Chain A, Ispe In Complex With Adp And Cdp
pdb|2V8P|B Chain B, Ispe In Complex With Adp And Cdp
pdb|2VF3|A Chain A, Aquifex Aeolicus Ispe In Complex With Ligand
pdb|2VF3|B Chain B, Aquifex Aeolicus Ispe In Complex With Ligand
Length = 271
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 4 PGSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFER------FAFFGHSSVDREK- 56
PG+ + + N++V +++ N + PL E+E L F G S++ R K
Sbjct: 92 PGAGLGGGSSNLAV--VLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAIGRGKG 149
Query: 57 --LEPIARQIARKCK-GLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEE 113
LEP+ +I+ K +P + TG + R + ++ + + QRI+ EV ++E
Sbjct: 150 EVLEPVETEISGKITLVIPQVSSSTGRVYSSLREEHFVTPEYAEEKIQRIISGEVEEIEN 209
Query: 114 I 114
+
Sbjct: 210 V 210
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 346 FRPDLNLIREIPENV-EKLIHLKYLNLSGLRIESLPETLCE-LYNLQKLDIRRCQDLREL 403
FR + IP N+ + +L +L L IE +P L + L NL+ ++ LR++
Sbjct: 128 FRFTTRRLTHIPANLLTDMRNLSHLELRA-NIEEMPSHLFDDLENLESIEFGS-NKLRQM 185
Query: 404 PTGI-GKLKNMRSLLNGDTSSLKYLPIGI-SRLTSLRTL 440
P GI GK+ ++ L N ++ LK +P GI RLTSL+ +
Sbjct: 186 PRGIFGKMPKLKQL-NLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|2P14|A Chain A, Crystal Structure Of Small Subunit (r.bspd6i2) Of The
Heterodimeric Restriction Endonuclease R.bspd6i
Length = 192
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 244 VRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAI 288
RHIG N + P++ +F +L + L D H+NP+ + + I
Sbjct: 118 ARHIGFNKESEPVIPLTVDQFKKLVTQLKGDGEHFNPNKLKEILI 162
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 360 VEKLIHLKYLNLSGLRIESLP--ETLCELYNLQKLDIRRCQ 398
EK +LK+LNLSG +I+ L E L +L NL+ LD+ C+
Sbjct: 89 AEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 129
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 360 VEKLIHLKYLNLSGLRIESLPETLCE-LYNLQKLDIRRCQDLRELPTGI-GKLKNMRSLL 417
+++L +L YL L+G +++SLP + + L NL++L + Q L+ LP G+ KL N+ + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNL-TYL 138
Query: 418 NGDTSSLKYLPIGI-SRLTSLRTLE 441
+ L+ LP G+ +LT+L L+
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLD 163
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 327 LFSKLACLRALVI------SQPSPIFRPDLNL---------IREIPENV-EKLIHLKYLN 370
+F KL L+ LV+ S P +F NL ++ +P+ V +KL +L L+
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Query: 371 LSGLRIESLPETLCE-LYNLQKLDIRRCQDLRELPTGI 407
L +++SLPE + + L L++L + Q L+ +P G+
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQ-LKSVPDGV 200
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 7 KIVVTTRNVSVA-RMMRSTNIISIKP-LPEDEFWSLFERFAFFGHSSVDREKLEPIARQI 64
+I++TTR+ SV +M +++ ++ L ++ + F ++ +E L A I
Sbjct: 259 QILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV-----NMKKEDLPAEAHSI 313
Query: 65 ARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVN-EWQRILDSEVWKVEEIKQGLLAPLL 123
++CKG PL + G LL D + + N +++RI S + E + + + +
Sbjct: 314 IKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVE 373
Query: 124 LSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLW 160
+ D +K ++ ++ KD + + L LW
Sbjct: 374 MLRED------IKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 360 VEKLIHLKYLNLSGLRIESLP--ETLCELYNLQKLDIRRCQ 398
EK +L +LNLSG +I+ L E L +L NL+ LD+ C+
Sbjct: 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 351 NLIREIPENVEKLIHLKYLNLSGLRIESLPE 381
N + E+P +E+L HL +L L +++S+P
Sbjct: 122 NKLTELPRGIERLTHLTHLALDQNQLKSIPH 152
>pdb|3OQ0|A Chain A, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|B Chain B, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|C Chain C, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|D Chain D, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|E Chain E, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|F Chain F, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|G Chain G, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|H Chain H, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|I Chain I, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
pdb|3OQ0|J Chain J, Crystal Structure Of Motif N Of Saccharomyces Cerevisiae
Dbf4
Length = 151
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 8 IVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARK 67
IV+T R+V +++ T+I+S + WS + F + VD + L K
Sbjct: 73 IVITRRSVENIYLLKDTDILSRAKKNYXKVWSYEKAARFLKNLDVDLDHLS--------K 124
Query: 68 CKGLPLAAKVTGNLLCDKR 86
K LAA NLL +++
Sbjct: 125 TKSASLAAPTLSNLLHNEK 143
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 54 REKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVN-EWQRILDSEVWKVE 112
+E L A I ++CKG PL + G LL D + + N +++RI S + E
Sbjct: 310 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYE 369
Query: 113 EIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLW 160
+ + + + + D +K ++ ++ KD + + L LW
Sbjct: 370 ALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKVLCVLW 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,591,116
Number of Sequences: 62578
Number of extensions: 543788
Number of successful extensions: 1062
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 39
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)