Query 043450
Match_columns 561
No_of_seqs 297 out of 3655
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-54 8E-59 465.7 21.0 428 3-505 287-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.7E-49 1.7E-53 446.9 26.6 380 3-429 322-722 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 3.2E-24 7E-29 210.3 2.1 155 3-169 127-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.2E-19 2.5E-24 207.6 12.4 206 325-561 157-364 (968)
5 PLN00113 leucine-rich repeat r 99.8 3.6E-19 7.7E-24 203.6 11.2 208 323-561 179-388 (968)
6 KOG0444 Cytoskeletal regulator 99.8 6.9E-21 1.5E-25 188.8 -4.1 45 517-561 326-370 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 1.1E-19 2.5E-24 180.3 1.3 262 244-560 9-275 (1255)
8 PLN03210 Resistant to P. syrin 99.7 2E-16 4.3E-21 181.6 12.9 276 241-560 588-900 (1153)
9 KOG0472 Leucine-rich repeat pr 99.7 5.7E-19 1.2E-23 166.9 -8.6 235 244-560 70-304 (565)
10 KOG4194 Membrane glycoprotein 99.6 2.5E-16 5.5E-21 155.7 5.3 205 323-561 140-349 (873)
11 KOG4194 Membrane glycoprotein 99.6 1.2E-16 2.6E-21 158.1 2.3 247 242-561 173-424 (873)
12 KOG0472 Leucine-rich repeat pr 99.6 7E-18 1.5E-22 159.6 -6.5 229 249-561 52-283 (565)
13 KOG0617 Ras suppressor protein 99.6 1.8E-17 4E-22 139.1 -4.0 173 353-553 23-196 (264)
14 PRK15370 E3 ubiquitin-protein 99.4 5.5E-13 1.2E-17 143.8 7.2 134 241-441 198-331 (754)
15 PRK15370 E3 ubiquitin-protein 99.4 1.7E-12 3.6E-17 140.1 9.4 139 243-450 179-317 (754)
16 KOG0617 Ras suppressor protein 99.4 1.8E-14 3.9E-19 121.3 -4.5 130 328-473 52-182 (264)
17 PRK15387 E3 ubiquitin-protein 99.3 1.6E-11 3.5E-16 131.9 14.2 233 241-561 221-453 (788)
18 KOG0618 Serine/threonine phosp 99.2 6.4E-13 1.4E-17 138.8 -3.3 144 244-449 47-190 (1081)
19 KOG0618 Serine/threonine phosp 99.2 1.2E-12 2.7E-17 136.7 -2.3 217 323-561 255-484 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.2 1E-11 2.2E-16 123.8 3.7 217 322-560 71-314 (319)
21 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4.1E-17 128.5 -3.4 159 322-504 88-246 (722)
22 KOG0532 Leucine-rich repeat (L 99.1 2.5E-12 5.3E-17 127.7 -3.4 180 331-549 74-253 (722)
23 PRK15387 E3 ubiquitin-protein 99.1 2.1E-10 4.5E-15 123.4 9.2 48 492-560 382-429 (788)
24 cd00116 LRR_RI Leucine-rich re 99.1 7.4E-11 1.6E-15 117.5 3.4 225 323-561 42-286 (319)
25 KOG4237 Extracellular matrix p 99.0 2.2E-11 4.8E-16 115.9 -1.9 38 239-276 64-102 (498)
26 KOG4658 Apoptotic ATPase [Sign 99.0 1.5E-10 3.2E-15 127.1 3.3 179 331-543 544-730 (889)
27 COG4886 Leucine-rich repeat (L 99.0 2.6E-10 5.5E-15 117.1 3.7 184 328-549 112-296 (394)
28 KOG4237 Extracellular matrix p 98.8 7.4E-11 1.6E-15 112.4 -6.1 112 320-441 79-194 (498)
29 KOG3207 Beta-tubulin folding c 98.8 2.2E-09 4.7E-14 103.9 3.0 212 241-543 120-339 (505)
30 COG4886 Leucine-rich repeat (L 98.7 4.6E-09 9.9E-14 107.9 3.2 157 328-507 135-292 (394)
31 PF14580 LRR_9: Leucine-rich r 98.7 4.4E-09 9.6E-14 92.8 2.5 80 331-422 18-99 (175)
32 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.4E-13 90.3 3.9 102 330-443 40-148 (175)
33 KOG1259 Nischarin, modulator o 98.6 1.9E-08 4E-13 92.9 2.2 138 383-548 280-417 (490)
34 PLN03150 hypothetical protein; 98.6 1.1E-07 2.4E-12 102.5 7.2 106 333-448 419-526 (623)
35 KOG1259 Nischarin, modulator o 98.5 2.2E-08 4.8E-13 92.4 -0.8 105 330-449 282-386 (490)
36 KOG3207 Beta-tubulin folding c 98.5 4.4E-08 9.5E-13 95.1 1.1 207 328-559 117-332 (505)
37 PLN03150 hypothetical protein; 98.3 6.5E-07 1.4E-11 96.6 5.9 93 365-459 419-512 (623)
38 PF13855 LRR_8: Leucine rich r 98.3 5.9E-07 1.3E-11 64.9 3.8 57 365-422 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.3 8.8E-07 1.9E-11 64.0 4.3 58 332-398 1-60 (61)
40 KOG0531 Protein phosphatase 1, 98.2 3.3E-07 7.1E-12 94.4 0.5 174 328-544 91-269 (414)
41 PF12799 LRR_4: Leucine Rich r 98.1 2.6E-06 5.6E-11 56.5 3.6 40 364-404 1-40 (44)
42 KOG0531 Protein phosphatase 1, 98.1 3.6E-07 7.8E-12 94.1 -1.3 189 330-560 70-262 (414)
43 KOG1909 Ran GTPase-activating 98.1 7.6E-07 1.6E-11 84.3 0.7 18 260-277 25-42 (382)
44 PRK15386 type III secretion pr 98.1 7.8E-06 1.7E-10 81.2 6.9 83 328-430 48-133 (426)
45 KOG1859 Leucine-rich repeat pr 98.0 2.7E-07 5.8E-12 95.0 -4.0 123 333-473 165-288 (1096)
46 KOG2120 SCF ubiquitin ligase, 97.9 6E-07 1.3E-11 83.1 -4.2 182 332-541 185-374 (419)
47 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.4E-10 52.7 3.2 41 332-381 1-41 (44)
48 KOG4579 Leucine-rich repeat (L 97.8 1.1E-06 2.3E-11 72.1 -3.1 103 331-441 26-129 (177)
49 KOG1909 Ran GTPase-activating 97.7 8.9E-06 1.9E-10 77.3 0.9 216 323-560 21-277 (382)
50 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 85.6 2.3 134 364-503 122-261 (699)
51 KOG2120 SCF ubiquitin ligase, 97.5 5.5E-06 1.2E-10 76.9 -3.9 175 313-503 191-374 (419)
52 PRK15386 type III secretion pr 97.5 0.00015 3.3E-09 72.2 5.3 67 361-432 49-115 (426)
53 KOG4579 Leucine-rich repeat (L 97.4 2.3E-05 4.9E-10 64.5 -0.6 93 327-430 48-141 (177)
54 KOG3665 ZYG-1-like serine/thre 97.4 0.0002 4.2E-09 77.5 5.2 92 321-423 162-262 (699)
55 KOG1859 Leucine-rich repeat pr 97.2 1.1E-05 2.5E-10 83.4 -6.6 130 238-423 160-291 (1096)
56 COG5238 RNA1 Ran GTPase-activa 96.7 0.0016 3.4E-08 60.2 3.4 197 323-543 22-255 (388)
57 KOG1644 U2-associated snRNP A' 96.6 0.0025 5.4E-08 56.4 4.4 99 331-441 41-146 (233)
58 KOG4341 F-box protein containi 96.6 0.00094 2E-08 65.3 1.5 218 321-558 205-457 (483)
59 KOG1644 U2-associated snRNP A' 96.5 0.0035 7.6E-08 55.5 4.5 107 363-474 41-150 (233)
60 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.2E-08 35.5 1.2 19 366-384 2-20 (22)
61 KOG2982 Uncharacterized conser 96.2 0.0023 4.9E-08 60.0 1.8 202 328-559 67-285 (418)
62 PRK04841 transcriptional regul 96.0 0.045 9.7E-07 62.9 11.5 174 3-220 150-332 (903)
63 KOG2123 Uncharacterized conser 95.9 0.00054 1.2E-08 63.4 -3.6 101 329-441 16-123 (388)
64 KOG2739 Leucine-rich acidic nu 95.8 0.0053 1.2E-07 56.7 2.3 80 361-443 40-124 (260)
65 KOG4341 F-box protein containi 95.7 0.0011 2.3E-08 65.0 -2.7 215 321-560 179-433 (483)
66 COG5238 RNA1 Ran GTPase-activa 95.6 0.014 3.1E-07 54.1 4.0 17 261-277 26-42 (388)
67 KOG2123 Uncharacterized conser 95.4 0.0018 3.9E-08 60.0 -2.2 81 327-417 36-123 (388)
68 PF00560 LRR_1: Leucine Rich R 95.3 0.0086 1.9E-07 32.9 1.0 21 388-409 1-21 (22)
69 KOG2739 Leucine-rich acidic nu 95.2 0.017 3.7E-07 53.4 3.5 112 324-447 35-155 (260)
70 KOG2982 Uncharacterized conser 95.2 0.0074 1.6E-07 56.6 1.0 70 321-398 86-157 (418)
71 PF13504 LRR_7: Leucine rich r 94.3 0.028 6E-07 28.6 1.3 14 366-379 3-16 (17)
72 PRK00080 ruvB Holliday junctio 93.6 0.31 6.7E-06 48.5 8.4 156 5-194 151-310 (328)
73 PF13504 LRR_7: Leucine rich r 93.4 0.038 8.3E-07 28.1 0.8 17 530-546 1-17 (17)
74 KOG1947 Leucine rich repeat pr 93.4 0.027 6E-07 59.3 0.6 111 324-441 206-327 (482)
75 TIGR00635 ruvB Holliday juncti 93.0 0.4 8.7E-06 47.2 8.2 73 5-81 130-204 (305)
76 KOG0473 Leucine-rich repeat pr 92.5 0.0067 1.4E-07 54.9 -4.5 85 328-422 38-122 (326)
77 KOG0473 Leucine-rich repeat pr 91.4 0.0075 1.6E-07 54.6 -5.5 87 353-441 30-117 (326)
78 smart00370 LRR Leucine-rich re 90.6 0.19 4E-06 28.7 1.7 19 364-382 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 90.6 0.19 4E-06 28.7 1.7 19 364-382 2-20 (26)
80 PRK06893 DNA replication initi 89.1 0.97 2.1E-05 42.3 6.2 71 4-78 123-203 (229)
81 KOG1947 Leucine rich repeat pr 88.4 0.14 3.1E-06 53.8 0.1 60 363-422 187-254 (482)
82 KOG3864 Uncharacterized conser 86.4 0.14 3.1E-06 45.6 -1.0 63 358-420 119-185 (221)
83 smart00370 LRR Leucine-rich re 86.4 0.53 1.2E-05 26.8 1.7 21 529-549 1-21 (26)
84 smart00369 LRR_TYP Leucine-ric 86.4 0.53 1.2E-05 26.8 1.7 21 529-549 1-21 (26)
85 PF13306 LRR_5: Leucine rich r 86.0 1.7 3.6E-05 36.2 5.3 56 361-419 32-89 (129)
86 smart00364 LRR_BAC Leucine-ric 83.8 0.59 1.3E-05 26.6 1.0 19 529-547 1-19 (26)
87 PF13306 LRR_5: Leucine rich r 82.6 3.8 8.3E-05 33.9 6.1 77 360-441 8-87 (129)
88 KOG3864 Uncharacterized conser 75.4 0.47 1E-05 42.4 -1.7 87 355-441 92-182 (221)
89 PF01637 Arch_ATPase: Archaeal 75.2 11 0.00023 35.0 7.3 50 25-77 184-233 (234)
90 COG2909 MalT ATP-dependent tra 69.3 35 0.00077 37.8 10.0 172 3-221 158-339 (894)
91 TIGR03015 pepcterm_ATPase puta 67.3 13 0.00027 35.6 6.0 58 25-82 185-242 (269)
92 PRK00411 cdc6 cell division co 66.1 1.6E+02 0.0034 30.0 14.4 168 8-195 176-359 (394)
93 PF13516 LRR_6: Leucine Rich r 64.1 2.1 4.5E-05 23.7 -0.1 12 365-376 3-14 (24)
94 smart00367 LRR_CC Leucine-rich 63.3 5.4 0.00012 22.6 1.5 14 387-400 2-15 (26)
95 smart00365 LRR_SD22 Leucine-ri 62.5 6 0.00013 22.6 1.6 13 364-376 2-14 (26)
96 TIGR03420 DnaA_homol_Hda DnaA 61.9 24 0.00052 32.6 6.6 72 5-80 123-203 (226)
97 KOG4308 LRR-containing protein 58.6 0.11 2.3E-06 54.2 -10.8 196 332-543 87-303 (478)
98 PRK09087 hypothetical protein; 56.0 26 0.00055 32.7 5.6 70 4-77 116-194 (226)
99 PRK08727 hypothetical protein; 55.3 33 0.00072 32.1 6.3 68 4-75 125-201 (233)
100 KOG4308 LRR-containing protein 53.9 0.44 9.6E-06 49.7 -7.2 200 321-541 104-329 (478)
101 smart00368 LRR_RI Leucine rich 44.5 17 0.00036 21.0 1.5 14 364-377 2-15 (28)
102 COG3903 Predicted ATPase [Gene 43.9 11 0.00023 38.0 1.0 175 3-193 115-291 (414)
103 COG3899 Predicted ATPase [Gene 43.5 81 0.0018 35.9 7.9 174 24-221 211-387 (849)
104 PRK08084 DNA replication initi 37.9 94 0.002 29.1 6.4 67 6-76 132-207 (235)
105 PRK06620 hypothetical protein; 36.4 81 0.0018 29.0 5.6 66 3-72 111-183 (214)
106 TIGR01242 26Sp45 26S proteasom 30.6 1.3E+02 0.0027 30.4 6.4 64 4-72 260-328 (364)
107 PRK05642 DNA replication initi 29.9 2.2E+02 0.0049 26.5 7.5 70 4-77 129-207 (234)
108 PRK09112 DNA polymerase III su 28.9 1.1E+02 0.0023 30.8 5.4 68 8-81 175-243 (351)
109 PF00308 Bac_DnaA: Bacterial d 27.8 2.1E+02 0.0045 26.4 6.8 68 4-75 129-205 (219)
110 PRK07471 DNA polymerase III su 27.8 1.8E+02 0.004 29.3 6.8 69 4-80 170-240 (365)
111 PRK05564 DNA polymerase III su 24.6 2.6E+02 0.0057 27.4 7.3 69 3-79 121-191 (313)
112 TIGR00678 holB DNA polymerase 23.3 1.7E+02 0.0036 26.1 5.2 60 4-73 125-186 (188)
113 KOG4062 6-O-methylguanine-DNA 22.0 1.1E+02 0.0023 26.4 3.2 25 57-86 109-133 (178)
114 PF10236 DAP3: Mitochondrial r 20.5 2.6E+02 0.0056 27.5 6.2 61 14-75 246-306 (309)
115 PRK14961 DNA polymerase III su 20.3 1.4E+02 0.003 30.2 4.4 67 4-74 148-216 (363)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-54 Score=465.69 Aligned_cols=428 Identities=30% Similarity=0.460 Sum_probs=327.9
Q ss_pred CCCcEEEEEcCchHHHhh-cCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhh
Q 043450 3 LPGSKIVVTTRNVSVARM-MRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNL 81 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~ 81 (561)
..||||++|||++.|+.. ++++..+++++|.++|||+||++.||..... .++.++++|++||++|+|||||+.++|+.
T Consensus 287 ~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ 365 (889)
T KOG4658|consen 287 ENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGL 365 (889)
T ss_pred cCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 468999999999999998 8888999999999999999999999865332 23459999999999999999999999999
Q ss_pred ccccccccccCCcchhHHHHHHHhhhhhhh----hhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcccCHHHHH
Q 043450 82 LCDKRTGNLLSSKSIVNEWQRILDSEVWKV----EEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELI 157 (561)
Q Consensus 82 L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li 157 (561)
| +.+.+.++|+++.+...+.. .+....++.++++||+.||+ ++|.||+|||.||+|+.|+++.|+
T Consensus 366 m---------a~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 366 L---------ACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred h---------cCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHH
Confidence 5 44556889999988654442 23356888999999999997 899999999999999999999999
Q ss_pred HHHHHcCCCCCCc-chhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHHHhhc-----cceEEEeec-
Q 043450 158 NLWMAQGYLNADE-DEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQFVSR-----KECLWVEIN- 230 (561)
Q Consensus 158 ~~w~a~g~~~~~~-~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~~i~~-----~e~~~~~~~- 230 (561)
.+|+||||+.+.+ ...+++.|.+|+.+|++++|+...... +... +|+|||++++||.++++ ++..+....
T Consensus 435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~-~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~ 511 (889)
T KOG4658|consen 435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKE-TVKMHDVVREMALWIASDFGKQEENQIVSDGV 511 (889)
T ss_pred HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--ccee-EEEeeHHHHHHHHHHhccccccccceEEECCc
Confidence 9999999999854 456899999999999999999886543 3333 39999999999999999 666444432
Q ss_pred CcceeeeeecCCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCC
Q 043450 231 GTKELVINFFGEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGID 310 (561)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (561)
+....+....+..+|++++..+....++.+ ...++|++|.+.++..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~--------------------------------- 557 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSD--------------------------------- 557 (889)
T ss_pred CccccccccchhheeEEEEeccchhhccCC-CCCCccceEEEeecch---------------------------------
Confidence 333334445567899999999988777743 4455899999998710
Q ss_pred CCCCCCCCcchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCcc
Q 043450 311 DESPSNPSLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQ 390 (561)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~ 390 (561)
........+|..++.|++|||++| ..+..+|.+|+.|.+||||+++++.+..+|.++++|+.|.
T Consensus 558 --------~l~~is~~ff~~m~~LrVLDLs~~--------~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 558 --------WLLEISGEFFRSLPLLRVLDLSGN--------SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred --------hhhhcCHHHHhhCcceEEEECCCC--------CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 013344566889999999999986 6789999999999999999999999999999999999999
Q ss_pred EEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCc--
Q 043450 391 KLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRE-- 468 (561)
Q Consensus 391 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~-- 468 (561)
+||+.++..+..+|..+..|++||+|.+.... ...-...++.+.+|++|..+-..... ...+..+...+.|..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s----~~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS----VLLLEDLLGMTRLRSLL 696 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch----hHhHhhhhhhHHHHHHh
Confidence 99999998777777767779999999987654 11111223444444444322222111 111122222222222
Q ss_pred --eEEcCCCCCCCcchhhhcccccccccccEEEEeecCC
Q 043450 469 --CRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVA 505 (561)
Q Consensus 469 --l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 505 (561)
+.+.+ .........+..+.+|+.|.+..+.+.
T Consensus 697 ~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 697 QSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred Hhhhhcc-----cccceeecccccccCcceEEEEcCCCc
Confidence 22222 223445566788888999998877754
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.7e-49 Score=446.86 Aligned_cols=380 Identities=22% Similarity=0.268 Sum_probs=282.8
Q ss_pred CCCcEEEEEcCchHHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhhc
Q 043450 3 LPGSKIVVTTRNVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLL 82 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L 82 (561)
++|||||||||+++++..++++.+|+|+.|++++||+||+++||... .+++++++++++||++|+|+||||+++|++|
T Consensus 322 ~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L 399 (1153)
T PLN03210 322 GSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYL 399 (1153)
T ss_pred CCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 68999999999999998888889999999999999999999999653 3446799999999999999999999999998
Q ss_pred cccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcccCHHHHHHHHHH
Q 043450 83 CDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMA 162 (561)
Q Consensus 83 ~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a 162 (561)
+++. ..+|+.+++..... ...++..++++||++|+++ ..|.||+++||||.+..+ ..+..|.+
T Consensus 400 ~~k~----------~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~-~~k~~Fl~ia~ff~~~~~---~~v~~~l~ 462 (1153)
T PLN03210 400 RGRD----------KEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNK-KDKAIFRHIACLFNGEKV---NDIKLLLA 462 (1153)
T ss_pred cCCC----------HHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCcc-chhhhhheehhhcCCCCH---HHHHHHHH
Confidence 7764 57899998876543 3457889999999999863 479999999999988643 34566777
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHHHhhccce--------EEEeecCcce
Q 043450 163 QGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQFVSRKEC--------LWVEINGTKE 234 (561)
Q Consensus 163 ~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~~i~~~e~--------~~~~~~~~~~ 234 (561)
.+.+.. +..++.|++++|++.... +++|||++++||+++++++. +|...+....
T Consensus 463 ~~~~~~----------~~~l~~L~~ksLi~~~~~--------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~v 524 (1153)
T PLN03210 463 NSDLDV----------NIGLKNLVDKSLIHVRED--------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDV 524 (1153)
T ss_pred hcCCCc----------hhChHHHHhcCCEEEcCC--------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHH
Confidence 654432 223889999999976321 29999999999999998763 4444444444
Q ss_pred eeeeecCCceEEEEeeecCCCCCc---ccccccCceeEEEEccCCCCCc------chhhhhhhhhhhhhhHHHhhhccCC
Q 043450 235 LVINFFGEKVRHIGLNFQRGASFP---MSFFEFDRLRSLLIYDTSHYNP------SLFQSMAISSAYSLVNAVLYLVSSP 305 (561)
Q Consensus 235 ~~~~~~~~~~~~l~l~~~~~~~~~---~~~~~~~~Lr~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (561)
+....++..+++++++.+....+. .+|.+|++|+.|.+........ -..++..++..++.++|..++....
T Consensus 525 l~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l 604 (1153)
T PLN03210 525 LEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM 604 (1153)
T ss_pred HHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC
Confidence 455667788999999887765443 5689999999999976521110 0012334566677777777777666
Q ss_pred CCCCCCCCCCCCCcchhHHH---HHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCC-Cccccc
Q 043450 306 GLGIDDESPSNPSLNSSILR---ELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLR-IESLPE 381 (561)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~~lp~ 381 (561)
+..+.+..+....+....+. ..+..+.+|++|+++++ +.++.+|. ++.+++|++|++++|. +..+|.
T Consensus 605 P~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~--------~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 605 PSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS--------KNLKEIPD-LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCcCCccCCcEEECcCccccccccccccCCCCCEEECCCC--------CCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence 66665555544444333332 22456778888888874 44666664 6777888888888776 667888
Q ss_pred cccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcc
Q 043450 382 TLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPI 429 (561)
Q Consensus 382 ~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 429 (561)
+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 88888888888888887777887765 677788887777766665553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.88 E-value=3.2e-24 Score=210.26 Aligned_cols=155 Identities=37% Similarity=0.674 Sum_probs=121.8
Q ss_pred CCCcEEEEEcCchHHHhhcCC-cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhh
Q 043450 3 LPGSKIVVTTRNVSVARMMRS-TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNL 81 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~~~~~~-~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~ 81 (561)
+.||+||||||++.++..+.. ...|+|++|+++||++||++.++... ..+.+..++++++|+++|+|+||||+++|++
T Consensus 127 ~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~ 205 (287)
T PF00931_consen 127 SSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASY 205 (287)
T ss_dssp HSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 469999999999999887765 67999999999999999999998654 2233455678999999999999999999999
Q ss_pred ccccccccccCCcchhHHHHHHHhhhhhhhh---hhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcccCHHHHHH
Q 043450 82 LCDKRTGNLLSSKSIVNEWQRILDSEVWKVE---EIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELIN 158 (561)
Q Consensus 82 L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~ 158 (561)
|+.++ +..+|+.+.+....... .....+..++..||+.|++ .+|+||+|||+||+++.|+++.+++
T Consensus 206 l~~~~---------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~ 274 (287)
T PF00931_consen 206 LRSKS---------TVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIR 274 (287)
T ss_dssp HHHHH---------SSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHH
T ss_pred ccccc---------cccccccccccccccccccccccccccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHH
Confidence 75543 35678887766444432 1346788899999999999 7999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q 043450 159 LWMAQGYLNAD 169 (561)
Q Consensus 159 ~w~a~g~~~~~ 169 (561)
+|+++|++...
T Consensus 275 lW~~e~~i~~~ 285 (287)
T PF00931_consen 275 LWVAEGFISSK 285 (287)
T ss_dssp HHTT-HHTC--
T ss_pred HHHHCCCCccc
Confidence 99999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1.2e-19 Score=207.57 Aligned_cols=206 Identities=19% Similarity=0.195 Sum_probs=115.6
Q ss_pred HHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCcc
Q 043450 325 RELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 325 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
+..+..+.+|++|++++| .....+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+
T Consensus 157 p~~~~~l~~L~~L~L~~n--------~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGN--------VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred ChHHhcCCCCCEEECccC--------cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 333455555555555552 112344555555555555555555544 44555555555555555555544455
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
|..++++++|++|++++|...+.+|..++++++|++|+ +..+.+.+..+.. +..+++|+.|++++. .....
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n----~l~~~ 299 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF--LYQNKLSGPIPPS---IFSLQKLISLDLSDN----SLSGE 299 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE--CcCCeeeccCchh---HhhccCcCEEECcCC----eeccC
Confidence 55555555555555555554445555555555555555 3344333222222 233334444444332 11223
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhcccCCcEEEcC
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~ 561 (561)
.+..+.++++|+.|++++|.+ .+.+|..+..+++|+.|++++|.+. .+|.+++.+++|+.|+|+
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~--------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNF--------------TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred CChhHcCCCCCcEEECCCCcc--------------CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 344455566666666665542 3445677788889999999988865 688888889999998874
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=3.6e-19 Score=203.61 Aligned_cols=208 Identities=20% Similarity=0.219 Sum_probs=164.8
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcC
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLR 401 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~ 401 (561)
..|..+.++++|++|++++| .....+|..++.+++|++|++++|.+. .+|..++++++|++|++++|....
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASN--------QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred cCChhhhhCcCCCeeeccCC--------CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 34556788999999999984 334567888999999999999999977 788899999999999999998666
Q ss_pred ccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcc
Q 043450 402 ELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVD 481 (561)
Q Consensus 402 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~ 481 (561)
.+|..++++++|+.|++++|...+.+|..++++++|++|+ +..|...+..+..+ ..+++|+.|.+.+. ...
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--Ls~n~l~~~~p~~~---~~l~~L~~L~l~~n----~~~ 321 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD--LSDNSLSGEIPELV---IQLQNLEILHLFSN----NFT 321 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE--CcCCeeccCCChhH---cCCCCCcEEECCCC----ccC
Confidence 8899999999999999999987778898999999999998 56666654444443 45556666666543 223
Q ss_pred hhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhcccCCcEEEc
Q 043450 482 EAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLLTNLRDLNL 560 (561)
Q Consensus 482 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L 560 (561)
+..+..+..+++|+.|++++|.+ ...+|..+..+++|+.|++++|.+. .+|.++..+++|+.|++
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l--------------~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKF--------------SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCC--------------cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 34556678889999999997764 3346777888899999999999865 68889988999999887
Q ss_pred C
Q 043450 561 D 561 (561)
Q Consensus 561 ~ 561 (561)
+
T Consensus 388 ~ 388 (968)
T PLN00113 388 F 388 (968)
T ss_pred c
Confidence 4
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=6.9e-21 Score=188.82 Aligned_cols=45 Identities=24% Similarity=0.235 Sum_probs=39.4
Q ss_pred cchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 517 ENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 517 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
...+-+|++++-++.|++|.++.|++.++|+.|--|+.|..|||+
T Consensus 326 N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 326 NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence 346778999999999999999999988999999889999999875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.1e-19 Score=180.28 Aligned_cols=262 Identities=20% Similarity=0.210 Sum_probs=126.2
Q ss_pred eEEEEeeecCC--CCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcch
Q 043450 244 VRHIGLNFQRG--ASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNS 321 (561)
Q Consensus 244 ~~~l~l~~~~~--~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (561)
+|.+.++.+.. ..+|.....|.++++|.+... +...+|..+........+.-.+. ..
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt--------~L~~vPeEL~~lqkLEHLs~~HN-------------~L 67 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT--------KLEQVPEELSRLQKLEHLSMAHN-------------QL 67 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechh--------hhhhChHHHHHHhhhhhhhhhhh-------------hh
Confidence 56666666654 567777777888888887766 22333333332222211111000 01
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCcccc--cccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCC
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLI--REIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQD 399 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 399 (561)
..+..-++.++.||.+++.. |.+ ..+|..|.+|.-|..|+|++|++.+.|..+..-+++-+|+|++|.
T Consensus 68 ~~vhGELs~Lp~LRsv~~R~---------N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~- 137 (1255)
T KOG0444|consen 68 ISVHGELSDLPRLRSVIVRD---------NNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN- 137 (1255)
T ss_pred HhhhhhhccchhhHHHhhhc---------cccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-
Confidence 11122234455555555555 222 234555555555555555555555555555555555555555555
Q ss_pred cCccCcc-cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCC
Q 043450 400 LRELPTG-IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVS 478 (561)
Q Consensus 400 ~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~ 478 (561)
+..+|.. +-+++.|-.|++++|. +..+|+.+.+|..|++|. +++|.. ....+..|++++.|..|.+++. +
T Consensus 138 IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~--Ls~NPL---~hfQLrQLPsmtsL~vLhms~T---q 208 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLK--LSNNPL---NHFQLRQLPSMTSLSVLHMSNT---Q 208 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhh--cCCChh---hHHHHhcCccchhhhhhhcccc---c
Confidence 5555542 3355555555555555 555555555555555555 444432 1222333444444444444332 2
Q ss_pred CcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEE
Q 043450 479 HVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDL 558 (561)
Q Consensus 479 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 558 (561)
.....+|.++..+.+|+.++++.|. ...+|+.+-.+++|+.|++++|.++++--.+....+|++|
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~---------------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENN---------------LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETL 273 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccC---------------CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhh
Confidence 2233444555555555555555554 2334444444455555555544444443333333344433
Q ss_pred Ec
Q 043450 559 NL 560 (561)
Q Consensus 559 ~L 560 (561)
+|
T Consensus 274 Nl 275 (1255)
T KOG0444|consen 274 NL 275 (1255)
T ss_pred cc
Confidence 33
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=2e-16 Score=181.63 Aligned_cols=276 Identities=18% Similarity=0.169 Sum_probs=146.4
Q ss_pred CCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 241 GEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
+.+++.+.+.......+|..+ ...+|+.|.+.++... .++.... .......+. +.....
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~--------~L~~~~~------~l~~Lk~L~-----Ls~~~~- 646 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE--------KLWDGVH------SLTGLRNID-----LRGSKN- 646 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc--------ccccccc------cCCCCCEEE-----CCCCCC-
Confidence 456888888887778888555 5678888887766210 0000000 000000000 000000
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCC-CccccccccCCCCccEEecCCCCC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLR-IESLPETLCELYNLQKLDIRRCQD 399 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~ 399 (561)
...+|. ++.+.+|+.|++++| ..+..+|.+++.+++|++|++++|. ++.+|..+ ++++|+.|++++|..
T Consensus 647 l~~ip~-ls~l~~Le~L~L~~c--------~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 647 LKEIPD-LSMATNLETLKLSDC--------SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred cCcCCc-cccCCcccEEEecCC--------CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 111222 566788888888886 5677888888888888888888875 77888766 688888888888877
Q ss_pred cCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCce-----------------------------eecCccC
Q 043450 400 LRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKF-----------------------------VVGGGVD 450 (561)
Q Consensus 400 ~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~-----------------------------~~~~~~~ 450 (561)
+..+|.. ..+|+.|++++|. +..+|..+ .+++|+.|.+. +.++...
T Consensus 717 L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 717 LKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred ccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 7777642 3456666666665 45555433 22233222210 2222222
Q ss_pred CCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcc------cccCCCcchHHHhh
Q 043450 451 GNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGE------EGRRKNENDEQLLE 524 (561)
Q Consensus 451 ~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------~~~~~n~~~~~~~~ 524 (561)
...|. .+.++++|+.|.+.++.+... ++..+ ++++|+.|++++|........ ...-.+.....+|.
T Consensus 792 ~~lP~---si~~L~~L~~L~Ls~C~~L~~----LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 792 VELPS---SIQNLHKLEHLEIENCINLET----LPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred cccCh---hhhCCCCCCEEECCCCCCcCe----eCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChH
Confidence 22222 234455555566655443322 12222 455666666665431110000 00000011334555
Q ss_pred cCCCCCCCceEEEeecC-CCCCChhhhcccCCcEEEc
Q 043450 525 ALQPPVNVEELWIVYYG-GNIFPKWLTLLTNLRDLNL 560 (561)
Q Consensus 525 ~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~L 560 (561)
++..+++|+.|++++|. +..+|..+.++++|+.|++
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 66666666666666654 5556666666666666554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=5.7e-19 Score=166.91 Aligned_cols=235 Identities=25% Similarity=0.318 Sum_probs=177.6
Q ss_pred eEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhH
Q 043450 244 VRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSI 323 (561)
Q Consensus 244 ~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (561)
+..+.++.+...++|.++.++..+..|.++.+ ....
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n--------------------------------------------~ls~ 105 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHN--------------------------------------------KLSE 105 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccc--------------------------------------------hHhh
Confidence 44556666666777777777777777776665 2345
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCcc
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
+|..+..+..|+.|+.+. |.+.++|++++.+..|..|+..+|++.++|+.++++..|..|++.+|+ +..+
T Consensus 106 lp~~i~s~~~l~~l~~s~---------n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l 175 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSS---------NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKAL 175 (565)
T ss_pred ccHHHhhhhhhhhhhccc---------cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhC
Confidence 666677888888888888 788888888888888999998888888899888888889999998887 7788
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
|+..-.++.|++|++..|- ++.+|+.+|.+.+|.-|+ +..|.+ . .+.+++.+..|..+.++. +.....
T Consensus 176 ~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~Ly--L~~Nki-~----~lPef~gcs~L~Elh~g~----N~i~~l 243 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLY--LRRNKI-R----FLPEFPGCSLLKELHVGE----NQIEML 243 (565)
T ss_pred CHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHH--hhhccc-c----cCCCCCccHHHHHHHhcc----cHHHhh
Confidence 7776678889999888877 888898898888888886 444443 1 122444444444444432 233333
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEc
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNL 560 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L 560 (561)
......++++|..|||..|+ ..++|+.++.+.+|.+||+++|.++.+|..++++ .|+.|-+
T Consensus 244 pae~~~~L~~l~vLDLRdNk---------------lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNK---------------LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred HHHHhcccccceeeeccccc---------------cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence 33344688999999999887 6678889999999999999999999999999888 7777654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=2.5e-16 Score=155.72 Aligned_cols=205 Identities=23% Similarity=0.349 Sum_probs=143.7
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCc
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDL 400 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~ 400 (561)
+-.+.+..+..||+|||+. |.+..+|. ++..-.++++|+|++|+|+.+- ..|..|.+|.+|.|+.|+ +
T Consensus 140 v~se~L~~l~alrslDLSr---------N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-i 209 (873)
T KOG4194|consen 140 VTSEELSALPALRSLDLSR---------NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-I 209 (873)
T ss_pred ccHHHHHhHhhhhhhhhhh---------chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-c
Confidence 3344466778899999998 78888764 3555578999999999988774 457888899999999988 7
Q ss_pred CccCc-ccccCCCCCeEEcCCCCCCccC-cccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCC
Q 043450 401 RELPT-GIGKLKNMRSLLNGDTSSLKYL-PIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVS 478 (561)
Q Consensus 401 ~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~ 478 (561)
+.+|. .|.+|++|+.|+|..|. +..+ -..|..|++|+.|. +..|.+..-....|-.+.++..|. +.. +
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlk--lqrN~I~kL~DG~Fy~l~kme~l~---L~~----N 279 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLK--LQRNDISKLDDGAFYGLEKMEHLN---LET----N 279 (873)
T ss_pred cccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhh--hhhcCcccccCcceeeecccceee---ccc----c
Confidence 77776 56669999999998887 4444 34578888888887 666665433333444444444333 221 3
Q ss_pred CcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChh-hhcccCCcE
Q 043450 479 HVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKW-LTLLTNLRD 557 (561)
Q Consensus 479 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~ 557 (561)
........++.++..|+.|+|++|.|.. .-++++...++|+.|+++.|.+.++|+. +.-|+.|+.
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~r--------------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQR--------------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhhe--------------eecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence 3344455678899999999999887533 2355677778888888888888887643 355666666
Q ss_pred EEcC
Q 043450 558 LNLD 561 (561)
Q Consensus 558 L~L~ 561 (561)
|+|+
T Consensus 346 LnLs 349 (873)
T KOG4194|consen 346 LNLS 349 (873)
T ss_pred hccc
Confidence 6553
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-16 Score=158.06 Aligned_cols=247 Identities=17% Similarity=0.186 Sum_probs=172.3
Q ss_pred CceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 242 EKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 242 ~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
.+++++.+..+.++.+. ..|..+..|-+|.+.++- .
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-------------------------------------------i 209 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-------------------------------------------I 209 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCc-------------------------------------------c
Confidence 35777778777777665 566677777777777661 1
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQ 398 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 398 (561)
...++..|+++++|+.|+|.. |.++.. .-.|..|.+|+.|.|..|+|..+-+. |..|.++++|+|..|+
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnr---------N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNR---------NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred cccCHHHhhhcchhhhhhccc---------cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 334455677788888888887 666554 34467788888888888888776543 6678888888888887
Q ss_pred CcCccC-cccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCC
Q 043450 399 DLRELP-TGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNV 477 (561)
Q Consensus 399 ~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~ 477 (561)
+..+. .++.+|++|++|++++|.+-..-++++...++|++|+ +..|.+..-.+..+..|..|..|. ++.
T Consensus 281 -l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld--Ls~N~i~~l~~~sf~~L~~Le~Ln---Ls~---- 350 (873)
T KOG4194|consen 281 -LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD--LSSNRITRLDEGSFRVLSQLEELN---LSH---- 350 (873)
T ss_pred -hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe--ccccccccCChhHHHHHHHhhhhc---ccc----
Confidence 55554 3677888888888888886555677788888888888 677766555555555555554443 322
Q ss_pred CCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh-hcccCCc
Q 043450 478 SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL-TLLTNLR 556 (561)
Q Consensus 478 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~ 556 (561)
+...-.....|..+++|+.|+|+.|.+++. .+.--..+..+++|++|.+.||.+..+|..- ..|.+|+
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~-----------IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWC-----------IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALE 419 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEE-----------EecchhhhccchhhhheeecCceeeecchhhhccCcccc
Confidence 333344445677888888998887775432 2222334556888999999999888888654 7888888
Q ss_pred EEEcC
Q 043450 557 DLNLD 561 (561)
Q Consensus 557 ~L~L~ 561 (561)
.|||.
T Consensus 420 ~LdL~ 424 (873)
T KOG4194|consen 420 HLDLG 424 (873)
T ss_pred eecCC
Confidence 88873
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=7e-18 Score=159.62 Aligned_cols=229 Identities=23% Similarity=0.260 Sum_probs=185.7
Q ss_pred eeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhHHHHHH
Q 043450 249 LNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSILRELF 328 (561)
Q Consensus 249 l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (561)
+..+....+......+..+.+|.+.++ ....+|..+
T Consensus 52 ls~N~l~~l~~dl~nL~~l~vl~~~~n--------------------------------------------~l~~lp~ai 87 (565)
T KOG0472|consen 52 LSHNDLEVLREDLKNLACLTVLNVHDN--------------------------------------------KLSQLPAAI 87 (565)
T ss_pred hccCchhhccHhhhcccceeEEEeccc--------------------------------------------hhhhCCHHH
Confidence 334444455557778888889988887 134456668
Q ss_pred hccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIG 408 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~ 408 (561)
+++..++.|+++. |.+.++|+.++.+..|+.|+.+.|.+.++|++|+.+..|+.|+..+|. +..+|+.++
T Consensus 88 g~l~~l~~l~vs~---------n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~ 157 (565)
T KOG0472|consen 88 GELEALKSLNVSH---------NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMV 157 (565)
T ss_pred HHHHHHHHhhccc---------chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHH
Confidence 8899999999999 899999999999999999999999999999999999999999999988 999999999
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCC--CceEEcCCCCCCCcchhhhc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLL--RECRVEGLSNVSHVDEAERL 486 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L--~~l~i~~~~~~~~~~~~~~~ 486 (561)
++.+|..|++.+|. +..+|+..-+++.|+.|+ .+.|-. +..|..++.+.+|..| +...+.. .|
T Consensus 158 ~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld--~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~~----------lP- 222 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNK-LKALPENHIAMKRLKHLD--CNSNLL-ETLPPELGGLESLELLYLRRNKIRF----------LP- 222 (565)
T ss_pred HHHHHHHhhccccc-hhhCCHHHHHHHHHHhcc--cchhhh-hcCChhhcchhhhHHHHhhhccccc----------CC-
Confidence 99999999999999 777777766699999997 555544 3445555555554432 2222222 22
Q ss_pred ccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCC-CCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 487 QLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQ-PPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 487 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~-~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
.|.+++.|.+|+++.|. .+.+|...+ .+++|..||+..|.++++|+.+..+.+|..||+|
T Consensus 223 ef~gcs~L~Elh~g~N~---------------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQ---------------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred CCCccHHHHHHHhcccH---------------HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 58899999999999776 666676665 7899999999999999999999999999999986
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-17 Score=139.09 Aligned_cols=173 Identities=24% Similarity=0.280 Sum_probs=112.0
Q ss_pred ccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCccccc
Q 043450 353 IREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGIS 432 (561)
Q Consensus 353 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~ 432 (561)
+.++|. +..+.++..|-|++|+++.+|+.|..|.+|+.|++++|. ++++|..+..+++|++|+++-|. +..+|.+||
T Consensus 23 f~~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred Hhhccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccC
Confidence 334443 334566667777777777777777777777777777776 77777777777777777777666 666777777
Q ss_pred CCcCCcccCceeecCcc-CCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCccc
Q 043450 433 RLTSLRTLEKFVVGGGV-DGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEE 511 (561)
Q Consensus 433 ~l~~L~~L~~~~~~~~~-~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 511 (561)
.++.|++|++. .|+. ....|..|--+.. |+-|.++. .-.+.++..++++++|+.|.+..|.
T Consensus 100 s~p~levldlt--ynnl~e~~lpgnff~m~t---lralyl~d-----ndfe~lp~dvg~lt~lqil~lrdnd-------- 161 (264)
T KOG0617|consen 100 SFPALEVLDLT--YNNLNENSLPGNFFYMTT---LRALYLGD-----NDFEILPPDVGKLTNLQILSLRDND-------- 161 (264)
T ss_pred CCchhhhhhcc--ccccccccCCcchhHHHH---HHHHHhcC-----CCcccCChhhhhhcceeEEeeccCc--------
Confidence 77777777733 3322 1222333333333 33333322 1235566677888888888887665
Q ss_pred ccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhccc
Q 043450 512 GRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLT 553 (561)
Q Consensus 512 ~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~ 553 (561)
.-.+|..++.+.+|+.|.+.||++..+|+.++++.
T Consensus 162 -------ll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 162 -------LLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred -------hhhCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 45567778888888999999998888888776543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=5.5e-13 Score=143.84 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=78.4
Q ss_pred CCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 241 GEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
+..++.+.+..+.++.+|..+. ++|++|.+.++...
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt------------------------------------------ 233 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT------------------------------------------ 233 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc------------------------------------------
Confidence 4567788888888777775443 57888888776210
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCc
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDL 400 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 400 (561)
. +|..+ ..+|+.|++++ |.+..+|..+. .+|++|++++|+++.+|..+. .+|++|++++|. +
T Consensus 234 -s-LP~~l--~~~L~~L~Ls~---------N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-L 295 (754)
T PRK15370 234 -S-IPATL--PDTIQEMELSI---------NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-I 295 (754)
T ss_pred -c-CChhh--hccccEEECcC---------CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-c
Confidence 0 11111 12466666666 55566665543 356667776666666665543 466677776665 5
Q ss_pred CccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccC
Q 043450 401 RELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLE 441 (561)
Q Consensus 401 ~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 441 (561)
..+|..+. ++|+.|++++|. +..+|..+. ++|+.|+
T Consensus 296 t~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~ 331 (754)
T PRK15370 296 RTLPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLE 331 (754)
T ss_pred ccCcccch--hhHHHHHhcCCc-cccCCcccc--ccceecc
Confidence 56665432 356666666665 445554432 4566665
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.7e-12 Score=140.10 Aligned_cols=139 Identities=22% Similarity=0.351 Sum_probs=103.6
Q ss_pred ceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchh
Q 043450 243 KVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSS 322 (561)
Q Consensus 243 ~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (561)
+...+.+...+.+.+|..+ .+.++.|.+.++.. ..
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~L-------------------------------------------ts 213 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNNEL-------------------------------------------KS 213 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCCCC-------------------------------------------Cc
Confidence 3456777777777777544 25788999888722 11
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCc
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
.+.. + ..+|++|++++ |.+..+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++|. +..
T Consensus 214 LP~~-l--~~nL~~L~Ls~---------N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~ 276 (754)
T PRK15370 214 LPEN-L--QGNIKTLYANS---------NQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISC 276 (754)
T ss_pred CChh-h--ccCCCEEECCC---------CccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCc
Confidence 1112 2 25799999999 77888887664 479999999999999998775 589999999987 788
Q ss_pred cCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccC
Q 043450 403 LPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVD 450 (561)
Q Consensus 403 lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~ 450 (561)
+|..+. .+|+.|++++|. +..+|..+. ++|+.|+ +.+|.+.
T Consensus 277 LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~--Ls~N~Lt 317 (754)
T PRK15370 277 LPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLN--VQSNSLT 317 (754)
T ss_pred cccccC--CCCcEEECCCCc-cccCcccch--hhHHHHH--hcCCccc
Confidence 998664 589999999997 777887653 4788887 5566553
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-14 Score=121.26 Aligned_cols=130 Identities=27% Similarity=0.427 Sum_probs=83.4
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCc-CccCcc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDL-RELPTG 406 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~-~~lp~~ 406 (561)
+..+.+|++|++.+ |.++++|.+++.|++|+.|++.-|++..+|..|+.++.|++||+.+|... ..+|..
T Consensus 52 ia~l~nlevln~~n---------nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 52 IAELKNLEVLNLSN---------NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred HHHhhhhhhhhccc---------chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc
Confidence 55666777777776 66777777777777777777777777677777777777777777766533 246666
Q ss_pred cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcC
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEG 473 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~ 473 (561)
+..++.|+.|++++|. ...+|..++++++||.|. +..|.. -....+++.|+.|+.|+|.+
T Consensus 123 ff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~--lrdndl----l~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDND-FEILPPDVGKLTNLQILS--LRDNDL----LSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEe--eccCch----hhCcHHHHHHHHHHHHhccc
Confidence 6666777777777766 566677777777777765 333333 23334445555555555543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=1.6e-11 Score=131.87 Aligned_cols=233 Identities=21% Similarity=0.132 Sum_probs=135.6
Q ss_pred CCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 241 GEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
+..++.+.+..+..+.+|. ..++|++|.+.++..... +..+..+ ....+... .
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsL-----P~lp~sL-----------------~~L~Ls~N--~ 273 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSL-----PVLPPGL-----------------LELSIFSN--P 273 (788)
T ss_pred hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcc-----cCccccc-----------------ceeeccCC--c
Confidence 3467888888888777773 257888888887722100 0000000 00000000 1
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCc
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDL 400 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 400 (561)
...++. -...|+.|++++ |.++.+|.. +++|++|++++|.++.+|... .+|+.|++++|. +
T Consensus 274 L~~Lp~---lp~~L~~L~Ls~---------N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L 334 (788)
T PRK15387 274 LTHLPA---LPSGLCKLWIFG---------NQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-L 334 (788)
T ss_pred hhhhhh---chhhcCEEECcC---------Ccccccccc---ccccceeECCCCccccCCCCc---ccccccccccCc-c
Confidence 112222 235677788888 667777753 467888888888888777533 356677888877 6
Q ss_pred CccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCc
Q 043450 401 RELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHV 480 (561)
Q Consensus 401 ~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~ 480 (561)
..+|.. ..+|+.|++++|. +..+|... .+|+.|+ +..|.+.. .+.. ...|+.|++.+.. .
T Consensus 335 ~~LP~l---p~~Lq~LdLS~N~-Ls~LP~lp---~~L~~L~--Ls~N~L~~-LP~l------~~~L~~LdLs~N~----L 394 (788)
T PRK15387 335 TSLPTL---PSGLQELSVSDNQ-LASLPTLP---SELYKLW--AYNNRLTS-LPAL------PSGLKELIVSGNR----L 394 (788)
T ss_pred cccccc---ccccceEecCCCc-cCCCCCCC---cccceeh--hhcccccc-Cccc------ccccceEEecCCc----c
Confidence 677742 2478888888887 66777543 3455555 44444421 2211 1345556664421 1
Q ss_pred chhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEc
Q 043450 481 DEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNL 560 (561)
Q Consensus 481 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L 560 (561)
. .++. ..++|+.|++++|.+.. +|.. +.+|+.|++++|.++++|..+.++++|+.|+|
T Consensus 395 t-~LP~---l~s~L~~LdLS~N~Lss---------------IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 395 T-SLPV---LPSELKELMVSGNRLTS---------------LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred c-CCCC---cccCCCEEEccCCcCCC---------------CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence 1 1121 12578888888877432 2221 24577788888887778877777888877776
Q ss_pred C
Q 043450 561 D 561 (561)
Q Consensus 561 ~ 561 (561)
+
T Consensus 453 s 453 (788)
T PRK15387 453 E 453 (788)
T ss_pred C
Confidence 4
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=6.4e-13 Score=138.83 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=101.9
Q ss_pred eEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhH
Q 043450 244 VRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSI 323 (561)
Q Consensus 244 ~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (561)
+..+.+.++....+|..+..+.+|+.|.++.+. ...
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~--------------------------------------------i~~ 82 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY--------------------------------------------IRS 82 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhh--------------------------------------------Hhh
Confidence 566667777777777777777777777777661 122
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCcc
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
.|...+.+++|++|.|.+ |.+..+|.++..+++|++|++++|.+..+|..|..++.++.+++++|..+..+
T Consensus 83 vp~s~~~~~~l~~lnL~~---------n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~l 153 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKN---------NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRL 153 (1081)
T ss_pred Cchhhhhhhcchhheecc---------chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhh
Confidence 334567788888888887 77888888888888888888888888888888888888888888887545555
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCcc
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~ 449 (561)
+... .+++++..+...+.++.++++++. .|+ +..|..
T Consensus 154 g~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ld--Lr~N~~ 190 (1081)
T KOG0618|consen 154 GQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLD--LRYNEM 190 (1081)
T ss_pred cccc-----chhhhhhhhhcccchhcchhhhhe--eee--cccchh
Confidence 5422 666666666666677777777666 455 445544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=1.2e-12 Score=136.71 Aligned_cols=217 Identities=19% Similarity=0.209 Sum_probs=117.4
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCc
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
.+|++++.+.+|..++... |.+..+|..+..+.+|++|.+..|.++.+|+...++++|++|||..|. +..
T Consensus 255 ~lp~wi~~~~nle~l~~n~---------N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~ 324 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANH---------NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPS 324 (1081)
T ss_pred cchHHHHhcccceEecccc---------hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccc
Confidence 3446666677777777776 666677776777777777777777777777666667777777777766 666
Q ss_pred cCcccccC-C-CCCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCC
Q 043450 403 LPTGIGKL-K-NMRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSH 479 (561)
Q Consensus 403 lp~~~~~l-~-~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~ 479 (561)
+|+.+-.- . .|+.|+.+.+. +..+|.. =..++.|+.|. +.+|.++ ...+.-+....+|+.|++.. +.
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~Ly--lanN~Lt---d~c~p~l~~~~hLKVLhLsy----Nr 394 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELY--LANNHLT---DSCFPVLVNFKHLKVLHLSY----NR 394 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHH--HhcCccc---ccchhhhccccceeeeeecc----cc
Confidence 66643222 1 24555555554 4444421 12344566665 5555552 23344455555555555543 22
Q ss_pred cchhhhcccccccccccEEEEeecCCCCCcc--------cccCCCcchHHHhhcCCCCCCCceEEEeecCCCC--CChhh
Q 043450 480 VDEAERLQLYNKKNLLRLGLQFGRVADGEGE--------EGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI--FPKWL 549 (561)
Q Consensus 480 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--------~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~--lp~~~ 549 (561)
........+.++..|+.|+|++|++...+.. ....++.....+| .+..++.|+.+|++.|.++. +|.-.
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 2223334567888888888888874332110 0001111122233 44555666666666666432 22221
Q ss_pred hcccCCcEEEcC
Q 043450 550 TLLTNLRDLNLD 561 (561)
Q Consensus 550 ~~l~~L~~L~L~ 561 (561)
.. ++|+.|||+
T Consensus 474 p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 474 PS-PNLKYLDLS 484 (1081)
T ss_pred CC-cccceeecc
Confidence 11 566666653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=1e-11 Score=123.75 Aligned_cols=217 Identities=20% Similarity=0.171 Sum_probs=138.2
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCccccc-ccCccccccCc---cCEEecCCCCCc-----cccccccCC-CCccE
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLIR-EIPENVEKLIH---LKYLNLSGLRIE-----SLPETLCEL-YNLQK 391 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~~~l~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~ 391 (561)
..+...+..+.+|+.|++++| .+. ..+..+..+.+ |++|++++|.+. .+...+..+ ++|+.
T Consensus 71 ~~~~~~l~~~~~L~~L~l~~~---------~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 71 QSLLQGLTKGCGLQELDLSDN---------ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred HHHHHHHHhcCceeEEEccCC---------CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 344556777889999999984 343 34444555554 999999999876 234556677 89999
Q ss_pred EecCCCCCcC----ccCcccccCCCCCeEEcCCCCCCc----cCcccccCCcCCcccCceeecCccCCCCccC-chhhhc
Q 043450 392 LDIRRCQDLR----ELPTGIGKLKNMRSLLNGDTSSLK----YLPIGISRLTSLRTLEKFVVGGGVDGNNTCR-LESLKN 462 (561)
Q Consensus 392 L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~-~~~l~~ 462 (561)
|++++|.... .++..+..+++|++|++++|.... .++..+..+++|+.|+ +.++.+....... ...+..
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~--L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD--LNNNGLTDEGASALAETLAS 219 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe--ccCCccChHHHHHHHHHhcc
Confidence 9999998331 344556777889999999987432 3444555667899988 5555543221111 233455
Q ss_pred cCCCCceEEcCCCCCCCc-chhh-hcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeec
Q 043450 463 LQLLRECRVEGLSNVSHV-DEAE-RLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYY 540 (561)
Q Consensus 463 L~~L~~l~i~~~~~~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~ 540 (561)
+++|+.|++++..- ... .... .........|+.|++++|.+.+. ....+.+.+..+++|+.|++++|
T Consensus 220 ~~~L~~L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~----------~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 220 LKSLEVLNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCNDITDD----------GAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred cCCCCEEecCCCcC-chHHHHHHHHHHhccCCCceEEEccCCCCCcH----------HHHHHHHHHhcCCCccEEECCCC
Confidence 67788888877432 210 0011 01111247899999998876432 24455566666789999999999
Q ss_pred CCCCC-----Chhhhcc-cCCcEEEc
Q 043450 541 GGNIF-----PKWLTLL-TNLRDLNL 560 (561)
Q Consensus 541 ~~~~l-----p~~~~~l-~~L~~L~L 560 (561)
.+..- ...+... ++|+.|++
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 289 KFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred CCcHHHHHHHHHHHhhcCCchhhccc
Confidence 97643 2223344 67777765
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.9e-12 Score=128.48 Aligned_cols=159 Identities=29% Similarity=0.370 Sum_probs=117.7
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcC
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLR 401 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 401 (561)
..+|.-++.+..|..+.|.. |.+..+|+.++.+..|.+|+|+.|++..+|..++.|+ |+.|-+++|+ ++
T Consensus 88 ~elp~~~~~f~~Le~liLy~---------n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~ 156 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYH---------NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LT 156 (722)
T ss_pred ccCchHHHHHHHHHHHHHHh---------ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cc
Confidence 34455566777788888888 8889999999999999999999999999998888766 8899999887 89
Q ss_pred ccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcc
Q 043450 402 ELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVD 481 (561)
Q Consensus 402 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~ 481 (561)
.+|+.++.+..|.+|+.+.|. +..+|..++.+.+|+.|+ ...|.. .....++..|. |..|+++. +.-
T Consensus 157 ~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~--vrRn~l----~~lp~El~~Lp-Li~lDfSc-----Nki 223 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLN--VRRNHL----EDLPEELCSLP-LIRLDFSC-----NKI 223 (722)
T ss_pred cCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHH--Hhhhhh----hhCCHHHhCCc-eeeeeccc-----Cce
Confidence 999999988899999999888 788898899999999987 555554 33445555544 23344432 112
Q ss_pred hhhhcccccccccccEEEEeecC
Q 043450 482 EAERLQLYNKKNLLRLGLQFGRV 504 (561)
Q Consensus 482 ~~~~~~l~~l~~L~~L~l~~~~~ 504 (561)
..++..|.++++|++|-|.+|.+
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eecchhhhhhhhheeeeeccCCC
Confidence 33455566666666666665554
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.5e-12 Score=127.70 Aligned_cols=180 Identities=25% Similarity=0.298 Sum_probs=141.6
Q ss_pred cccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccC
Q 043450 331 LACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKL 410 (561)
Q Consensus 331 l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l 410 (561)
+..-...|++. |.+..+|..++.+..|+.+.|..|.+..+|..+.+|..|.+|||+.|. +..+|..+..|
T Consensus 74 ltdt~~aDlsr---------NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l 143 (722)
T KOG0532|consen 74 LTDTVFADLSR---------NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL 143 (722)
T ss_pred ccchhhhhccc---------cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC
Confidence 33445567777 889999999999999999999999999999999999999999999998 99999999888
Q ss_pred CCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccccc
Q 043450 411 KNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYN 490 (561)
Q Consensus 411 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 490 (561)
+ |+.|-+++|+ ++.+|.+|+.+..|..|+ .+.|.+ ......+..|..|+.|.+.. .....++..+..
T Consensus 144 p-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld--~s~nei----~slpsql~~l~slr~l~vrR-----n~l~~lp~El~~ 210 (722)
T KOG0532|consen 144 P-LKVLIVSNNK-LTSLPEEIGLLPTLAHLD--VSKNEI----QSLPSQLGYLTSLRDLNVRR-----NHLEDLPEELCS 210 (722)
T ss_pred c-ceeEEEecCc-cccCCcccccchhHHHhh--hhhhhh----hhchHHhhhHHHHHHHHHhh-----hhhhhCCHHHhC
Confidence 7 9999898888 899999999888999998 666655 34445555555555544432 122334444554
Q ss_pred ccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh
Q 043450 491 KKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL 549 (561)
Q Consensus 491 l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~ 549 (561)
+ .|..||+++|+ ...+|-.|..+.+|++|-|.+|++..-|..|
T Consensus 211 L-pLi~lDfScNk---------------is~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 211 L-PLIRLDFSCNK---------------ISYLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred C-ceeeeecccCc---------------eeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 4 58888999888 4446777889999999999999988777766
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=2.1e-10 Score=123.45 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=32.1
Q ss_pred cccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEc
Q 043450 492 KNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNL 560 (561)
Q Consensus 492 ~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L 560 (561)
.+|+.|+++.|.+. .+|. .+++|+.|++++|.+..+|... .+|+.|+|
T Consensus 382 ~~L~~LdLs~N~Lt---------------~LP~---l~s~L~~LdLS~N~LssIP~l~---~~L~~L~L 429 (788)
T PRK15387 382 SGLKELIVSGNRLT---------------SLPV---LPSELKELMVSGNRLTSLPMLP---SGLLSLSV 429 (788)
T ss_pred cccceEEecCCccc---------------CCCC---cccCCCEEEccCCcCCCCCcch---hhhhhhhh
Confidence 46788888877643 2232 2367999999999998888643 34455554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=7.4e-11 Score=117.51 Aligned_cols=225 Identities=19% Similarity=0.145 Sum_probs=141.8
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCc-cccccccCCCC---ccEEecCCCC
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYN---LQKLDIRRCQ 398 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~---L~~L~l~~~~ 398 (561)
.+...+...+.++.|+++++.... ....+..++..+..+++|++|++++|.+. ..+..+..+.. |++|++++|+
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 345556677778888888732100 00112334556677889999999999876 45555555555 9999999987
Q ss_pred CcC----ccCcccccC-CCCCeEEcCCCCCCc----cCcccccCCcCCcccCceeecCccCCCC-ccCchhhhccCCCCc
Q 043450 399 DLR----ELPTGIGKL-KNMRSLLNGDTSSLK----YLPIGISRLTSLRTLEKFVVGGGVDGNN-TCRLESLKNLQLLRE 468 (561)
Q Consensus 399 ~~~----~lp~~~~~l-~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~~~~~~~~~~~~~-~~~~~~l~~L~~L~~ 468 (561)
... .+...+..+ ++|+.|++++|.... .++..+..+++|++|+ +.++.+.+.. ......+..++.|+.
T Consensus 120 ~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~--l~~n~l~~~~~~~l~~~l~~~~~L~~ 197 (319)
T cd00116 120 LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN--LANNGIGDAGIRALAEGLKANCNLEV 197 (319)
T ss_pred cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE--CcCCCCchHHHHHHHHHHHhCCCCCE
Confidence 331 233455666 889999999998442 3444566777888887 5556553211 112234555667888
Q ss_pred eEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcC-CCCCCCceEEEeecCCC----
Q 043450 469 CRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEAL-QPPVNVEELWIVYYGGN---- 543 (561)
Q Consensus 469 l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l-~~~~~L~~L~l~~~~~~---- 543 (561)
|++.++.-...........+..+++|+.|++++|.+.+. ....+...+ .+.++|++|++++|.++
T Consensus 198 L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~----------~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA----------GAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH----------HHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 888765422222233445567788999999998875331 122233322 23578999999999874
Q ss_pred -CCChhhhcccCCcEEEcC
Q 043450 544 -IFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 544 -~lp~~~~~l~~L~~L~L~ 561 (561)
.++..+..+++|+.++++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 268 KDLAEVLAEKESLLELDLR 286 (319)
T ss_pred HHHHHHHhcCCCccEEECC
Confidence 234455677889998875
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=2.2e-11 Score=115.91 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=32.1
Q ss_pred ecCCceEEEEeeecCCCCCc-ccccccCceeEEEEccCC
Q 043450 239 FFGEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTS 276 (561)
Q Consensus 239 ~~~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~ 276 (561)
..+++...|.++.+.++.+| .+|..+++||.|+++++.
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~ 102 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN 102 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccc
Confidence 34667778899999999998 689999999999999883
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=1.5e-10 Score=127.14 Aligned_cols=179 Identities=29% Similarity=0.332 Sum_probs=128.9
Q ss_pred cccccEEeccCCCCCCCCCccc--ccccCcc-ccccCccCEEecCCCC-CccccccccCCCCccEEecCCCCCcCccCcc
Q 043450 331 LACLRALVISQPSPIFRPDLNL--IREIPEN-VEKLIHLKYLNLSGLR-IESLPETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 331 l~~L~~L~l~~~~~~~~~~~~~--~~~lp~~-~~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
.+.|++|-+.. +. +..++.. |-.++.|++|||++|. +.++|.+|++|-+|++|+++++. +..+|.+
T Consensus 544 ~~~L~tLll~~---------n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~ 613 (889)
T KOG4658|consen 544 NPKLRTLLLQR---------NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSG 613 (889)
T ss_pred CCccceEEEee---------cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchH
Confidence 44688888888 43 5555544 6779999999999987 88999999999999999999988 9999999
Q ss_pred cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhc
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 486 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~ 486 (561)
+++|.+|.+|++..+..+..+|..+..|++||+|.++.... ......+.++..|+.|+.+.+...+. ....
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---~~~~~~l~el~~Le~L~~ls~~~~s~------~~~e 684 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---SNDKLLLKELENLEHLENLSITISSV------LLLE 684 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeecccc---ccchhhHHhhhcccchhhheeecchh------HhHh
Confidence 99999999999999988888877677799999998655542 22345577777777777766643221 1111
Q ss_pred ccccccccc----cEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 487 QLYNKKNLL----RLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 487 ~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
.+..+..|. .+.+.++. ....+..+..+.+|+.|.+.++.+.
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~---------------~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCS---------------KRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhhhHHHHHHhHhhhhcccc---------------cceeecccccccCcceEEEEcCCCc
Confidence 122333333 23322211 3344556677888888888888864
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=2.6e-10 Score=117.13 Aligned_cols=184 Identities=28% Similarity=0.315 Sum_probs=142.3
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccC-ccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLI-HLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
+..+..+..|++.+ +.+..+|+..+.+. +|+.|++++|.+..+|..+..+++|+.|++++|. +..+|..
T Consensus 112 ~~~~~~l~~L~l~~---------n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~ 181 (394)
T COG4886 112 LLELTNLTSLDLDN---------NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL 181 (394)
T ss_pred hhcccceeEEecCC---------cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh
Confidence 44557899999999 88999999888885 9999999999999999889999999999999999 9999988
Q ss_pred cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhc
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 486 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~ 486 (561)
.+.+++|+.|++++|. +..+|..++.+..|++|. ..+|.. ...+..+..+..+..+.+.... ....+.
T Consensus 182 ~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~--~~~N~~----~~~~~~~~~~~~l~~l~l~~n~-----~~~~~~ 249 (394)
T COG4886 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELD--LSNNSI----IELLSSLSNLKNLSGLELSNNK-----LEDLPE 249 (394)
T ss_pred hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhh--hcCCcc----eecchhhhhcccccccccCCce-----eeeccc
Confidence 7799999999999998 899998887788899997 555532 2233344444444443322211 111245
Q ss_pred ccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh
Q 043450 487 QLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL 549 (561)
Q Consensus 487 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~ 549 (561)
.+..+.+|+.|+++.|.+.+ ++. +.+..+|+.|+++++.+...+...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~---------------i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS---------------ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceeccccccccc---------------ccc-ccccCccCEEeccCccccccchhh
Confidence 67888889999999887533 233 778899999999999977655444
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=7.4e-11 Score=112.39 Aligned_cols=112 Identities=28% Similarity=0.278 Sum_probs=87.8
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCC-CCCcccccc-ccCCCCccEEecCC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSG-LRIESLPET-LCELYNLQKLDIRR 396 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~-~~l~~lp~~-i~~L~~L~~L~l~~ 396 (561)
...++++.|+.+++||.|||+. |.|+.+ |+.|..++.|..|-+-+ |+|+.+|+. |++|..|+-|.+.-
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~---------N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSK---------NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred cccCChhhccchhhhceecccc---------cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4567788899999999999999 778777 78888888888887766 779999864 78899999999988
Q ss_pred CCCcCccCcccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcccC
Q 043450 397 CQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLE 441 (561)
Q Consensus 397 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~ 441 (561)
|+........+..+++|..|.+.+|. ...++. .+..+.+++++.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHh
Confidence 88444555678888888888888877 566665 456666666665
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.2e-09 Score=103.94 Aligned_cols=212 Identities=19% Similarity=0.140 Sum_probs=136.8
Q ss_pred CCceEEEEeeecCCCCCc--ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 241 GEKVRHIGLNFQRGASFP--MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~--~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.++++.++++++.+...+ .-...++++|.|.++++ .-
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-----------------------------------------L~ 158 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-----------------------------------------LF 158 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhh-----------------------------------------hH
Confidence 456778888888776555 35677899999999887 11
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCcc--ccccCccCEEecCCCCCc--cccccccCCCCccEEec
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPEN--VEKLIHLKYLNLSGLRIE--SLPETLCELYNLQKLDI 394 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~--~~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l 394 (561)
.......++...+++|+.|+|+. |.+....++ -..+.+|+.|.++.|.++ .+-...-.+++|+.|+|
T Consensus 159 ~nw~~v~~i~eqLp~Le~LNls~---------Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 159 HNWFPVLKIAEQLPSLENLNLSS---------NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL 229 (505)
T ss_pred HhHHHHHHHHHhcccchhccccc---------ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh
Confidence 12455667778899999999998 444332222 135789999999999987 44445567789999999
Q ss_pred CCCCCcCccCcccccCCCCCeEEcCCCCCCccCc--ccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEc
Q 043450 395 RRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLP--IGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVE 472 (561)
Q Consensus 395 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~ 472 (561)
..|..+..--....-+..|+.|+|++|. +...+ .-++.++.|+.|+ +..++.. ++
T Consensus 230 ~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln--ls~tgi~--------si------------ 286 (505)
T KOG3207|consen 230 EANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN--LSSTGIA--------SI------------ 286 (505)
T ss_pred hcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh--ccccCcc--------hh------------
Confidence 9986344333344567789999999988 44444 3467888888887 3333321 11
Q ss_pred CCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 473 GLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
.............+++|++|++..|.+.++.. ...+..+++|+.|.+.+|.+.
T Consensus 287 -----~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s-------------l~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 287 -----AEPDVESLDKTHTFPKLEYLNISENNIRDWRS-------------LNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred -----cCCCccchhhhcccccceeeecccCccccccc-------------cchhhccchhhhhhccccccc
Confidence 00011111223456778888888877655421 223445666777777777654
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=4.6e-09 Score=107.87 Aligned_cols=157 Identities=27% Similarity=0.326 Sum_probs=119.2
Q ss_pred Hhcc-ccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcc
Q 043450 328 FSKL-ACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 328 ~~~l-~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
...+ .+|+.|+++. +.+..+|..++.++.|+.|+++.|++..+|...+.+++|+.|++++|. +..+|..
T Consensus 135 ~~~~~~nL~~L~l~~---------N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~ 204 (394)
T COG4886 135 IGLLKSNLKELDLSD---------NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPE 204 (394)
T ss_pred cccchhhcccccccc---------cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchh
Confidence 3344 3899999999 889999888999999999999999999999988899999999999998 9999988
Q ss_pred cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhc
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 486 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~ 486 (561)
+..+..|+.|.+++|. ....+..+.+++++..|. ...+.. ......+..+..++.+++.+..- .. ..
T Consensus 205 ~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~--l~~n~~----~~~~~~~~~l~~l~~L~~s~n~i----~~-i~- 271 (394)
T COG4886 205 IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE--LSNNKL----EDLPESIGNLSNLETLDLSNNQI----SS-IS- 271 (394)
T ss_pred hhhhhhhhhhhhcCCc-ceecchhhhhcccccccc--cCCcee----eeccchhccccccceeccccccc----cc-cc-
Confidence 7788889999999986 566677788888888886 444443 11133344444455555543221 11 11
Q ss_pred ccccccccccEEEEeecCCCC
Q 043450 487 QLYNKKNLLRLGLQFGRVADG 507 (561)
Q Consensus 487 ~l~~l~~L~~L~l~~~~~~~~ 507 (561)
.+..+.+|+.|+++.+.+...
T Consensus 272 ~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 272 SLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccCccCEEeccCcccccc
Confidence 278889999999998875443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=4.4e-09 Score=92.81 Aligned_cols=80 Identities=29% Similarity=0.389 Sum_probs=18.7
Q ss_pred cccccEEeccCCCCCCCCCcccccccCcccc-ccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc-c
Q 043450 331 LACLRALVISQPSPIFRPDLNLIREIPENVE-KLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI-G 408 (561)
Q Consensus 331 l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~-~ 408 (561)
...++.|+|++ +.++.+. .++ .+.+|+.|++++|.|+.++ .+..++.|++|++++|+ ++.+++.+ .
T Consensus 18 ~~~~~~L~L~~---------n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRG---------NQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccc---------ccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHH
Confidence 33455666665 4454442 243 3555666666666655553 35555666666666655 55554433 2
Q ss_pred cCCCCCeEEcCCCC
Q 043450 409 KLKNMRSLLNGDTS 422 (561)
Q Consensus 409 ~l~~L~~L~l~~~~ 422 (561)
.+++|++|++++|.
T Consensus 86 ~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 86 NLPNLQELYLSNNK 99 (175)
T ss_dssp H-TT--EEE-TTS-
T ss_pred hCCcCCEEECcCCc
Confidence 45566666665555
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.1e-08 Score=90.32 Aligned_cols=102 Identities=30% Similarity=0.337 Sum_probs=51.2
Q ss_pred ccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccc-cCCCCccEEecCCCCCcCccCc--c
Q 043450 330 KLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETL-CELYNLQKLDIRRCQDLRELPT--G 406 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~--~ 406 (561)
.+.+|++|++++ |.++.++. +..+++|++|++++|.|+.+++.+ ..+++|+.|++++|+ +..+-. .
T Consensus 40 ~l~~L~~L~Ls~---------N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~ 108 (175)
T PF14580_consen 40 TLDKLEVLDLSN---------NQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEP 108 (175)
T ss_dssp T-TT--EEE-TT---------S--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGG
T ss_pred hhcCCCEEECCC---------CCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHH
Confidence 577899999999 78888864 788999999999999999887655 468999999999998 655543 5
Q ss_pred cccCCCCCeEEcCCCCCCccCc----ccccCCcCCcccCce
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLP----IGISRLTSLRTLEKF 443 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp----~~i~~l~~L~~L~~~ 443 (561)
+..+++|+.|++.+|.. ...+ ..+..+++|+.||..
T Consensus 109 L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 77889999999999984 3333 236788888888843
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.9e-08 Score=92.86 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=87.4
Q ss_pred ccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhc
Q 043450 383 LCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKN 462 (561)
Q Consensus 383 i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~ 462 (561)
+...+.|+++||++|. +..+-+++.-+++++.|++++|. +..+ .++..|++|+.|+ +++|.. ...-+.=.+
T Consensus 280 ~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v-~nLa~L~~L~~LD--LS~N~L----s~~~Gwh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTV-QNLAELPQLQLLD--LSGNLL----AECVGWHLK 350 (490)
T ss_pred cchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeee-hhhhhcccceEee--cccchh----HhhhhhHhh
Confidence 3346778888888877 77777777777888888888877 3333 2366777888877 555544 222222223
Q ss_pred cCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCC
Q 043450 463 LQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGG 542 (561)
Q Consensus 463 L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~ 542 (561)
|.++..|.+.+ ..-...+.+.++-+|..|+++.|++.. .++ ...++++|.|+.|.+.+|++
T Consensus 351 LGNIKtL~La~------N~iE~LSGL~KLYSLvnLDl~~N~Ie~------------lde-V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 351 LGNIKTLKLAQ------NKIETLSGLRKLYSLVNLDLSSNQIEE------------LDE-VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hcCEeeeehhh------hhHhhhhhhHhhhhheeccccccchhh------------HHH-hcccccccHHHHHhhcCCCc
Confidence 34444443322 111112345667788888888887421 222 34788999999999999998
Q ss_pred CCCChh
Q 043450 543 NIFPKW 548 (561)
Q Consensus 543 ~~lp~~ 548 (561)
..+|+.
T Consensus 412 ~~~vdY 417 (490)
T KOG1259|consen 412 AGSVDY 417 (490)
T ss_pred cccchH
Confidence 887754
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.1e-07 Score=102.47 Aligned_cols=106 Identities=24% Similarity=0.358 Sum_probs=86.2
Q ss_pred cccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCccCcccccCC
Q 043450 333 CLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLRELPTGIGKLK 411 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~ 411 (561)
.++.|+|+++ ..-+.+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|..+++++
T Consensus 419 ~v~~L~L~~n--------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQ--------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCC--------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 4778888883 233467888999999999999999987 8888999999999999999986678999999999
Q ss_pred CCCeEEcCCCCCCccCcccccCC-cCCcccCceeecCc
Q 043450 412 NMRSLLNGDTSSLKYLPIGISRL-TSLRTLEKFVVGGG 448 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~~i~~l-~~L~~L~~~~~~~~ 448 (561)
+|+.|++++|...+.+|..++.+ .++..++ +.+|.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~--~~~N~ 526 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFN--FTDNA 526 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEE--ecCCc
Confidence 99999999999888999887654 3445554 44443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=2.2e-08 Score=92.37 Aligned_cols=105 Identities=32% Similarity=0.354 Sum_probs=79.9
Q ss_pred ccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccccc
Q 043450 330 KLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGK 409 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~ 409 (561)
..+.|..+||++ |.+..+.+++.-++.++.|+++.|.|..+-. +..|.+|+.|||++|. +..+...-.+
T Consensus 282 TWq~LtelDLS~---------N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~K 350 (490)
T KOG1259|consen 282 TWQELTELDLSG---------NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLK 350 (490)
T ss_pred hHhhhhhccccc---------cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhh
Confidence 456688888888 8888888888888889999999988876643 7788888899998887 6666555557
Q ss_pred CCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCcc
Q 043450 410 LKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~ 449 (561)
+.|.+.|.++.|. +..+ .++++|.+|..|+ ..+|++
T Consensus 351 LGNIKtL~La~N~-iE~L-SGL~KLYSLvnLD--l~~N~I 386 (490)
T KOG1259|consen 351 LGNIKTLKLAQNK-IETL-SGLRKLYSLVNLD--LSSNQI 386 (490)
T ss_pred hcCEeeeehhhhh-Hhhh-hhhHhhhhheecc--ccccch
Confidence 7788888888876 4444 4677777777777 555544
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.4e-08 Score=95.07 Aligned_cols=207 Identities=17% Similarity=0.116 Sum_probs=132.9
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccC--ccccccCccCEEecCCCCCc---cccccccCCCCccEEecCCCCCcCc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIP--ENVEKLIHLKYLNLSGLRIE---SLPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp--~~~~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
-+++++|+...|.. ..+...+ +....+++++.|||++|-+. .+-+-+..|++|+.|+++.|+....
T Consensus 117 Qsn~kkL~~IsLdn---------~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 117 QSNLKKLREISLDN---------YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hhhHHhhhheeecC---------ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 35788999999998 4454444 35677899999999999765 3445577899999999999983322
Q ss_pred cCc-ccccCCCCCeEEcCCCCCCc-cCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCc
Q 043450 403 LPT-GIGKLKNMRSLLNGDTSSLK-YLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHV 480 (561)
Q Consensus 403 lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~ 480 (561)
... .-..++.|+.|.++.|.... .+-...-.+++|++|. +..|........... -++.|+.|++.+. +..
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~--L~~N~~~~~~~~~~~---i~~~L~~LdLs~N---~li 259 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLY--LEANEIILIKATSTK---ILQTLQELDLSNN---NLI 259 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhh--hhcccccceecchhh---hhhHHhhccccCC---ccc
Confidence 222 23467889999999998432 2222345678899997 545532222222233 3344455555442 222
Q ss_pred chhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCCh--hhhcccCCcEE
Q 043450 481 DEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPK--WLTLLTNLRDL 558 (561)
Q Consensus 481 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L 558 (561)
..........++.|+.|+++.+.+.+...+ ..+..+-...+++|++|++..|.+...+. .+..+++|+.|
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~--------d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEP--------DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred ccccccccccccchhhhhccccCcchhcCC--------CccchhhhcccccceeeecccCccccccccchhhccchhhhh
Confidence 333335678889999999998887654222 22233335568999999999999866552 23445555544
Q ss_pred E
Q 043450 559 N 559 (561)
Q Consensus 559 ~ 559 (561)
.
T Consensus 332 ~ 332 (505)
T KOG3207|consen 332 R 332 (505)
T ss_pred h
Confidence 3
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=6.5e-07 Score=96.60 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=83.3
Q ss_pred ccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCce
Q 043450 365 HLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKF 443 (561)
Q Consensus 365 ~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~ 443 (561)
.++.|+|++|.+. .+|..+++|++|+.|+|++|.....+|..++.+++|+.|++++|...+.+|..++++++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~-- 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN-- 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE--
Confidence 4788999999987 8899999999999999999996678999999999999999999998889999999999999998
Q ss_pred eecCccCCCCccCchh
Q 043450 444 VVGGGVDGNNTCRLES 459 (561)
Q Consensus 444 ~~~~~~~~~~~~~~~~ 459 (561)
+.+|.+.+..|..+..
T Consensus 497 Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 497 LNGNSLSGRVPAALGG 512 (623)
T ss_pred CcCCcccccCChHHhh
Confidence 7788887777765543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5.9e-07 Score=64.94 Aligned_cols=57 Identities=28% Similarity=0.505 Sum_probs=32.3
Q ss_pred ccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCC
Q 043450 365 HLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTS 422 (561)
Q Consensus 365 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 422 (561)
+|++|++++|+++.+|+ .+.++++|++|++++|. +..+|+ .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666655553 34556666666666555 444433 45566666666666554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=8.8e-07 Score=64.01 Aligned_cols=58 Identities=33% Similarity=0.488 Sum_probs=51.9
Q ss_pred ccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCC
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 398 (561)
++|++|++++ |.+..+|. .|..+++|++|++++|.++.+|+ .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~---------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN---------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS---------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC---------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4689999999 88999984 67899999999999999998874 68999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=3.3e-07 Score=94.41 Aligned_cols=174 Identities=26% Similarity=0.283 Sum_probs=115.2
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+++|..|++.. |.++.+...+..+.+|++|++++|.|+.+. .+..++.|+.|++++|. +..++. +
T Consensus 91 l~~~~~l~~l~l~~---------n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD---------NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-L 158 (414)
T ss_pred cccccceeeeeccc---------cchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-C
Confidence 56789999999999 888888776788999999999999998874 47788889999999998 777764 5
Q ss_pred ccCCCCCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCccCCCCccCchhhhccCCC--CceEEcCCCCCCCcchhh
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLL--RECRVEGLSNVSHVDEAE 484 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L--~~l~i~~~~~~~~~~~~~ 484 (561)
..+++|+.+++++|. +..+... ...+.+++.+. +.++.... ...+..+..+..+ ....+..+..
T Consensus 159 ~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~--l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~-------- 225 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNR-IVDIENDELSELISLEELD--LGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG-------- 225 (414)
T ss_pred ccchhhhcccCCcch-hhhhhhhhhhhccchHHHh--ccCCchhc--ccchHHHHHHHHhhcccccceeccC--------
Confidence 668899999999998 4555432 46777787775 44444321 1112222222211 2122222111
Q ss_pred hccccccc--ccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC
Q 043450 485 RLQLYNKK--NLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI 544 (561)
Q Consensus 485 ~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 544 (561)
+..+. +|+.++++.|.+.. +++.+..++++..|++..+.+..
T Consensus 226 ---l~~~~~~~L~~l~l~~n~i~~---------------~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 226 ---LNELVMLHLRELYLSGNRISR---------------SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ---cccchhHHHHHHhcccCcccc---------------ccccccccccccccchhhccccc
Confidence 11111 47888888777422 22556677778888887777543
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.6e-06 Score=56.46 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=26.1
Q ss_pred CccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccC
Q 043450 364 IHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 364 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
++|++|++++|+|+.+|+.+++|++|++|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 35677777777777777667777777777777776 55544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=3.6e-07 Score=94.11 Aligned_cols=189 Identities=30% Similarity=0.366 Sum_probs=128.5
Q ss_pred ccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccccc
Q 043450 330 KLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGK 409 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~ 409 (561)
.+..++.+.+.. +.+...-..++.+++|.+|++.+|.|+.+...+..+.+|++|++++|. ++.+. .+..
T Consensus 70 ~l~~l~~l~l~~---------n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQ---------NLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLST 138 (414)
T ss_pred HhHhHHhhccch---------hhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhh
Confidence 456666666777 777775555788999999999999999887668899999999999998 77775 3778
Q ss_pred CCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchh--hhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 410 LKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLES--LKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~--l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
++.|+.|++++|. +..++ ++..+++|+.++ +..+.+.. +.. +..+..++.+.+.+... .....
T Consensus 139 l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~--l~~n~i~~-----ie~~~~~~~~~l~~l~l~~n~i------~~i~~ 203 (414)
T KOG0531|consen 139 LTLLKELNLSGNL-ISDIS-GLESLKSLKLLD--LSYNRIVD-----IENDELSELISLEELDLGGNSI------REIEG 203 (414)
T ss_pred ccchhhheeccCc-chhcc-CCccchhhhccc--CCcchhhh-----hhhhhhhhccchHHHhccCCch------hcccc
Confidence 8889999999998 55553 566788898888 55554421 222 35555555544443221 11112
Q ss_pred cccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCC--CCceEEEeecCCCCCChhhhcccCCcEEEc
Q 043450 488 LYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPV--NVEELWIVYYGGNIFPKWLTLLTNLRDLNL 560 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~--~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L 560 (561)
+..+..+..+++..|.+.. .+.+..+. +|+.+++.+|++...|..+..+.++..|++
T Consensus 204 ~~~~~~l~~~~l~~n~i~~----------------~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISK----------------LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL 262 (414)
T ss_pred hHHHHHHHHhhccccccee----------------ccCcccchhHHHHHHhcccCccccccccccccccccccch
Confidence 2333444444555554322 11222333 389999999999887666777788777765
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=7.6e-07 Score=84.33 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=12.9
Q ss_pred cccccCceeEEEEccCCC
Q 043450 260 SFFEFDRLRSLLIYDTSH 277 (561)
Q Consensus 260 ~~~~~~~Lr~L~~~~~~~ 277 (561)
....+..+..+.++++++
T Consensus 25 ~~~~~~s~~~l~lsgnt~ 42 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTF 42 (382)
T ss_pred HhcccCceEEEeccCCch
Confidence 445677788888888843
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=7.8e-06 Score=81.24 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=54.5
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCC-CccccccccCCCCccEEecCCCCCcCccCcc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLR-IESLPETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
+..+.+++.|++++ +.++.+|. + ..+|+.|.+++|. ++.+|..+. .+|+.|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~---------c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKD---------CDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCC---------CCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 44568888888888 45666662 2 2368888888765 677776553 58888888888667777754
Q ss_pred cccCCCCCeEEcCCCC--CCccCccc
Q 043450 407 IGKLKNMRSLLNGDTS--SLKYLPIG 430 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~--~~~~lp~~ 430 (561)
|+.|.+..+. .+..+|.+
T Consensus 114 ------Le~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 114 ------VRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred ------cceEEeCCCCCcccccCcch
Confidence 4555554433 24555543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=2.7e-07 Score=95.04 Aligned_cols=123 Identities=28% Similarity=0.286 Sum_probs=71.4
Q ss_pred cccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCc-ccccCC
Q 043450 333 CLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPT-GIGKLK 411 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~ 411 (561)
.|.+.+.++ |.+..+-.++.-++.|+.|+|++|+++..- .+..|++|++|||++|. +..+|. ....+
T Consensus 165 ~L~~a~fsy---------N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc- 232 (1096)
T KOG1859|consen 165 KLATASFSY---------NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC- 232 (1096)
T ss_pred hHhhhhcch---------hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-
Confidence 455555555 556666666666677777777777766553 56667777777777776 666665 22222
Q ss_pred CCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcC
Q 043450 412 NMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEG 473 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~ 473 (561)
+|+.|.+.+|. +..+ .+|.+|++|+.|+ ++.|.+.+ .+.+.-|..|..|+.|.+.|
T Consensus 233 ~L~~L~lrnN~-l~tL-~gie~LksL~~LD--lsyNll~~--hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 233 KLQLLNLRNNA-LTTL-RGIENLKSLYGLD--LSYNLLSE--HSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hheeeeecccH-HHhh-hhHHhhhhhhccc--hhHhhhhc--chhhhHHHHHHHHHHHhhcC
Confidence 37777777766 5554 3567777777776 44444321 22333344444444444433
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6e-07 Score=83.10 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=118.0
Q ss_pred ccccEEeccCCCCCCCCCccccc--ccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCccCc--c
Q 043450 332 ACLRALVISQPSPIFRPDLNLIR--EIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLRELPT--G 406 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~ 406 (561)
..|++|||+. ..++ .+-.-++.+.+|+.|.+.|+++. .+-..|.+-.+|+.||++.|..+++.-. -
T Consensus 185 sRlq~lDLS~---------s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSN---------SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcch---------hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence 3588999998 5554 23344577789999999999987 6667788899999999999987765532 4
Q ss_pred cccCCCCCeEEcCCCCCCccCcc-cccC-CcCCcccCceeecCccCCCCccCchhh-hccCCCCceEEcCCCCCCCcchh
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPI-GISR-LTSLRTLEKFVVGGGVDGNNTCRLESL-KNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~-~i~~-l~~L~~L~~~~~~~~~~~~~~~~~~~l-~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
+.+++.|..|+++.|......-. .+.+ -.+|..|++.....++. .+.+.-| ....+|..|+++.+-.+. ..
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~---~sh~~tL~~rcp~l~~LDLSD~v~l~---~~ 329 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ---KSHLSTLVRRCPNLVHLDLSDSVMLK---ND 329 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh---hhHHHHHHHhCCceeeeccccccccC---ch
Confidence 67889999999999985433211 1111 23566676332222221 1123333 235566666766543322 24
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecC
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYG 541 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 541 (561)
....|.+++.|+.|.++.|- ....+..-.+...|.|.+|++.|+-
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY-------------~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCY-------------DIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHHhcchheeeehhhhc-------------CCChHHeeeeccCcceEEEEecccc
Confidence 45567888889999888654 2222333346677889999988875
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.6e-05 Score=52.69 Aligned_cols=41 Identities=32% Similarity=0.449 Sum_probs=35.4
Q ss_pred ccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPE 381 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~ 381 (561)
++|++|++++ |.++.+|+.+++|++|++|++++|.++.+|+
T Consensus 1 ~~L~~L~l~~---------N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN---------NQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETS---------SS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccC---------CCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4799999999 8899999989999999999999999987753
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=1.1e-06 Score=72.10 Aligned_cols=103 Identities=19% Similarity=0.194 Sum_probs=76.6
Q ss_pred cccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCC-CCccEEecCCCCCcCccCccccc
Q 043450 331 LACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCEL-YNLQKLDIRRCQDLRELPTGIGK 409 (561)
Q Consensus 331 l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L-~~L~~L~l~~~~~~~~lp~~~~~ 409 (561)
-+.+..++|+.|.. -.+...+..+....+|...+|++|.+..+|+.+... +.+++|++++|. +.++|..+..
T Consensus 26 akE~h~ldLssc~l------m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aa 98 (177)
T KOG4579|consen 26 AKELHFLDLSSCQL------MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAA 98 (177)
T ss_pred HHHhhhcccccchh------hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhh
Confidence 44566777877431 112233344556678888899999998888877644 588999999888 8889988889
Q ss_pred CCCCCeEEcCCCCCCccCcccccCCcCCcccC
Q 043450 410 LKNMRSLLNGDTSSLKYLPIGISRLTSLRTLE 441 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 441 (561)
++.|+.|+++.|. +...|..|..|.+|-.|+
T Consensus 99 m~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 99 MPALRSLNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hHHhhhcccccCc-cccchHHHHHHHhHHHhc
Confidence 9999999998888 677788787777777775
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.74 E-value=8.9e-06 Score=77.26 Aligned_cols=216 Identities=19% Similarity=0.113 Sum_probs=136.6
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCccccc-----ccCccccccCccCEEecCCCC---C-cccccc-------ccCC
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIR-----EIPENVEKLIHLKYLNLSGLR---I-ESLPET-------LCEL 386 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~---l-~~lp~~-------i~~L 386 (561)
........+..+..+++++ |.++ .+-+.+.+.+.|+..+++.-- + .++|+. +-..
T Consensus 21 ~v~~~~~~~~s~~~l~lsg---------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSG---------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred hHHHHhcccCceEEEeccC---------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC
Confidence 3445567889999999999 5554 234456667789988887642 2 256543 4456
Q ss_pred CCccEEecCCCCCcCccCc----ccccCCCCCeEEcCCCCCCccCc--------------ccccCCcCCcccCceeecCc
Q 043450 387 YNLQKLDIRRCQDLRELPT----GIGKLKNMRSLLNGDTSSLKYLP--------------IGISRLTSLRTLEKFVVGGG 448 (561)
Q Consensus 387 ~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~lp--------------~~i~~l~~L~~L~~~~~~~~ 448 (561)
++|++||||.|-.-...++ -+.++..|++|.+.+|. ++..- .-++.-+.|+++. ..+|.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i--~~rNr 168 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFI--CGRNR 168 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEE--eeccc
Confidence 7999999999974444444 35678899999999997 43221 1234556777774 33333
Q ss_pred cCCCCccC-chhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCC
Q 043450 449 VDGNNTCR-LESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQ 527 (561)
Q Consensus 449 ~~~~~~~~-~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~ 527 (561)
........ -.-++..+.|..+.+....-...-.......+..+++|+.|+|..|..+.. -...+-..++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----------gs~~LakaL~ 238 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----------GSVALAKALS 238 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----------HHHHHHHHhc
Confidence 32111111 222344556666666543322222246667788999999999997764321 1334556677
Q ss_pred CCCCCceEEEeecCCCC-----CChhh-hcccCCcEEEc
Q 043450 528 PPVNVEELWIVYYGGNI-----FPKWL-TLLTNLRDLNL 560 (561)
Q Consensus 528 ~~~~L~~L~l~~~~~~~-----lp~~~-~~l~~L~~L~L 560 (561)
..++|+.|+++.|.++. +-..+ ...++|+.|.|
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceecc
Confidence 77899999999998653 22223 35788888876
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.7e-05 Score=85.64 Aligned_cols=134 Identities=25% Similarity=0.170 Sum_probs=68.3
Q ss_pred CccCEEecCCCC-Cc-cccccccC-CCCccEEecCCCCCc-CccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcc
Q 043450 364 IHLKYLNLSGLR-IE-SLPETLCE-LYNLQKLDIRRCQDL-RELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRT 439 (561)
Q Consensus 364 ~~L~~L~l~~~~-l~-~lp~~i~~-L~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 439 (561)
.+|++|+++|.. +. .-|..++. |++|+.|.+++-... .++-.-..++++|..||+++++ +..+ .+|++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 345555555543 21 33334442 466666666552211 1222234466677777777766 4444 56777777777
Q ss_pred cCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCc--chhhhcccccccccccEEEEeec
Q 043450 440 LEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHV--DEAERLQLYNKKNLLRLGLQFGR 503 (561)
Q Consensus 440 L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~ 503 (561)
|. ..+-.+ .....+..|=.|++|+.|+++.-...... -......-..+++|+.||.+++.
T Consensus 200 L~--mrnLe~--e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LS--MRNLEF--ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred Hh--ccCCCC--CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 75 222222 11234555666667777777654432221 11112233456777777777554
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=5.5e-06 Score=76.87 Aligned_cols=175 Identities=18% Similarity=0.170 Sum_probs=119.1
Q ss_pred CCCCCCcchhHHHHHHhccccccEEeccCCCCCCCCCcccccc-cCccccccCccCEEecCCCC-Ccccc--ccccCCCC
Q 043450 313 SPSNPSLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIRE-IPENVEKLIHLKYLNLSGLR-IESLP--ETLCELYN 388 (561)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-lp~~~~~l~~L~~L~l~~~~-l~~lp--~~i~~L~~ 388 (561)
.+++..+..+.+...++.+.+|+.|.+.+ +.+.. +-..+.+-.+|+.|+++.|. +++.. --+.+++.
T Consensus 191 DLS~s~it~stl~~iLs~C~kLk~lSlEg---------~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 191 DLSNSVITVSTLHGILSQCSKLKNLSLEG---------LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hcchhheeHHHHHHHHHHHHhhhhccccc---------cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 34556666778888899999999999999 44432 23456667889999999987 77432 34678999
Q ss_pred ccEEecCCCCCcCccCc-ccccC-CCCCeEEcCCCCCC---ccCcccccCCcCCcccCceeecCccCCCCccCchhhhcc
Q 043450 389 LQKLDIRRCQDLRELPT-GIGKL-KNMRSLLNGDTSSL---KYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNL 463 (561)
Q Consensus 389 L~~L~l~~~~~~~~lp~-~~~~l-~~L~~L~l~~~~~~---~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L 463 (561)
|+.|++++|...+..-. .+... ++|..|++++|... ..+.--..++++|..|+ ++.+... .+..+.++-++
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD--LSD~v~l--~~~~~~~~~kf 337 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD--LSDSVML--KNDCFQEFFKF 337 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec--ccccccc--CchHHHHHHhc
Confidence 99999999985544322 22232 47899999988621 11111235788999999 5554332 24567778888
Q ss_pred CCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeec
Q 043450 464 QLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGR 503 (561)
Q Consensus 464 ~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 503 (561)
..|+.+.++.|-.+ .......+...+.|.+|++.++-
T Consensus 338 ~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chheeeehhhhcCC---ChHHeeeeccCcceEEEEecccc
Confidence 88888877766432 22333456788999999997653
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00015 Score=72.22 Aligned_cols=67 Identities=27% Similarity=0.391 Sum_probs=51.6
Q ss_pred cccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCccccc
Q 043450 361 EKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGIS 432 (561)
Q Consensus 361 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~ 432 (561)
..+.+++.|++++|.++.+|. + ..+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|.++.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccc
Confidence 345788899999998888882 2 2479999999988888888755 35899999998866778886543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.44 E-value=2.3e-05 Score=64.48 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=80.9
Q ss_pred HHhccccccEEeccCCCCCCCCCcccccccCccccc-cCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCc
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREIPENVEK-LIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPT 405 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~-l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~ 405 (561)
...+...|...+|++ |.++.+|+.+.. .+.++.|++++|.|..+|..+..++.|+.|+++.|+ +...|.
T Consensus 48 ~l~~~~el~~i~ls~---------N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~ 117 (177)
T KOG4579|consen 48 MLSKGYELTKISLSD---------NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPR 117 (177)
T ss_pred HHhCCceEEEEeccc---------chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchH
Confidence 356777889999999 899999998854 458999999999999999999999999999999998 888888
Q ss_pred ccccCCCCCeEEcCCCCCCccCccc
Q 043450 406 GIGKLKNMRSLLNGDTSSLKYLPIG 430 (561)
Q Consensus 406 ~~~~l~~L~~L~l~~~~~~~~lp~~ 430 (561)
-|..|.+|-.|+..+|. ...+|-.
T Consensus 118 vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 118 VIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHHHhHHHhcCCCCc-cccCcHH
Confidence 88889999999988877 5666644
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=0.0002 Score=77.54 Aligned_cols=92 Identities=26% Similarity=0.276 Sum_probs=70.9
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccc--ccccCCCCccEEecCCCC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLP--ETLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 398 (561)
...+...+..+++|+.||+++ ..++.+ ..+++|++|+.|.+.+-.++..+ ..+.+|++|++||+|..+
T Consensus 162 ~~dF~~lc~sFpNL~sLDIS~---------TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 162 NDDFSQLCASFPNLRSLDISG---------TNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred chhHHHHhhccCccceeecCC---------CCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 344666788999999999999 667766 55899999999999998877433 568899999999999866
Q ss_pred CcCccCc-------ccccCCCCCeEEcCCCCC
Q 043450 399 DLRELPT-------GIGKLKNMRSLLNGDTSS 423 (561)
Q Consensus 399 ~~~~lp~-------~~~~l~~L~~L~l~~~~~ 423 (561)
... -+. .-..||+||.||.+++..
T Consensus 232 ~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 232 NND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 332 221 123589999999998764
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=1.1e-05 Score=83.39 Aligned_cols=130 Identities=20% Similarity=0.194 Sum_probs=97.3
Q ss_pred eecCCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCC
Q 043450 238 NFFGEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNP 317 (561)
Q Consensus 238 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (561)
...+.++..+++..+....+..++.-++.+++|.++++..
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~---------------------------------------- 199 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF---------------------------------------- 199 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh----------------------------------------
Confidence 3445666777777777777777777788889988888711
Q ss_pred CcchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCC
Q 043450 318 SLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRC 397 (561)
Q Consensus 318 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 397 (561)
.... .+..+.+|+.|||++ |.+..+|.--..-.+|..|.+++|.++++ ..|.+|++|+.||+++|
T Consensus 200 ----~~v~-~Lr~l~~LkhLDlsy---------N~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 200 ----TKVD-NLRRLPKLKHLDLSY---------NCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred ----hhhH-HHHhccccccccccc---------chhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHh
Confidence 1122 467899999999999 88888875322224599999999999887 46889999999999998
Q ss_pred CCcCccCc--ccccCCCCCeEEcCCCCC
Q 043450 398 QDLRELPT--GIGKLKNMRSLLNGDTSS 423 (561)
Q Consensus 398 ~~~~~lp~--~~~~l~~L~~L~l~~~~~ 423 (561)
- +....+ -++.|..|+.|+|.+|..
T Consensus 265 l-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 265 L-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred h-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6 444322 367788899999999873
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.65 E-value=0.0016 Score=60.22 Aligned_cols=197 Identities=20% Similarity=0.184 Sum_probs=114.3
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCccccc-----ccCccccccCccCEEecCCCC---Cc-ccc-------ccccCC
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIR-----EIPENVEKLIHLKYLNLSGLR---IE-SLP-------ETLCEL 386 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~---l~-~lp-------~~i~~L 386 (561)
.+.. +..+..+..++|++ |-++ .+...|.+-++|+..+++.-. .. ++| +.+-+|
T Consensus 22 v~ee-l~~~d~~~evdLSG---------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc 91 (388)
T COG5238 22 VVEE-LEMMDELVEVDLSG---------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC 91 (388)
T ss_pred HHHH-HHhhcceeEEeccC---------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC
Confidence 3444 34589999999999 5554 344556667889999888643 11 444 346689
Q ss_pred CCccEEecCCCCCcCccCcc----cccCCCCCeEEcCCCCCCccCccc-c-------------cCCcCCcccCceeec-C
Q 043450 387 YNLQKLDIRRCQDLRELPTG----IGKLKNMRSLLNGDTSSLKYLPIG-I-------------SRLTSLRTLEKFVVG-G 447 (561)
Q Consensus 387 ~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~~~~~~~lp~~-i-------------~~l~~L~~L~~~~~~-~ 447 (561)
++|++.+||.|-.-.+.|+. |.+-+.|.||.+++|. ++.+..+ | .+-+.|++. .++ |
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~v---icgrN 167 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVV---ICGRN 167 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEE---Eeccc
Confidence 99999999999866677764 5567889999999987 5544311 2 233455555 333 3
Q ss_pred ccCC-CCccCchhhhccCCCCceEEcCCCC-CCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhc
Q 043450 448 GVDG-NNTCRLESLKNLQLLRECRVEGLSN-VSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEA 525 (561)
Q Consensus 448 ~~~~-~~~~~~~~l~~L~~L~~l~i~~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~ 525 (561)
.+.. ........+.+=..|..+.+....- -..........+..+.+|+.|+|..|..+.. -...+-..
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~----------gS~~La~a 237 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE----------GSRYLADA 237 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh----------hHHHHHHH
Confidence 2210 0000111122223444444432110 0112233344556778888888887653321 12233344
Q ss_pred CCCCCCCceEEEeecCCC
Q 043450 526 LQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 526 l~~~~~L~~L~l~~~~~~ 543 (561)
++.-+.|+.|.+..|-++
T Consensus 238 l~~W~~lrEL~lnDClls 255 (388)
T COG5238 238 LCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hcccchhhhccccchhhc
Confidence 455566888888888754
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.64 E-value=0.0025 Score=56.38 Aligned_cols=99 Identities=24% Similarity=0.277 Sum_probs=61.6
Q ss_pred cccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccC-CCCccEEecCCCCCcCccCc--cc
Q 043450 331 LACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCE-LYNLQKLDIRRCQDLRELPT--GI 407 (561)
Q Consensus 331 l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~-L~~L~~L~l~~~~~~~~lp~--~~ 407 (561)
+.....+||+. |.+..++. +..++.|.+|.+.+|+|+.+-+.+.. +++|+.|.+.+|. ++++-+ .+
T Consensus 41 ~d~~d~iDLtd---------Ndl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pL 109 (233)
T KOG1644|consen 41 LDQFDAIDLTD---------NDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPL 109 (233)
T ss_pred ccccceecccc---------cchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchh
Confidence 34566677777 66665543 56677778888888887776555554 4667778777776 555532 35
Q ss_pred ccCCCCCeEEcCCCCCCccCc----ccccCCcCCcccC
Q 043450 408 GKLKNMRSLLNGDTSSLKYLP----IGISRLTSLRTLE 441 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp----~~i~~l~~L~~L~ 441 (561)
..+++|+.|.+-+|.. ...+ .-+..+++|++|+
T Consensus 110 a~~p~L~~Ltll~Npv-~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPV-EHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred ccCCccceeeecCCch-hcccCceeEEEEecCcceEee
Confidence 5666777777666652 2211 1245666677666
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.56 E-value=0.00094 Score=65.34 Aligned_cols=218 Identities=19% Similarity=0.127 Sum_probs=122.3
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCcc-------------------c----cccCccCEEecCCCC-C
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPEN-------------------V----EKLIHLKYLNLSGLR-I 376 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~-------------------~----~~l~~L~~L~l~~~~-l 376 (561)
...+.....++++|++|+++.|..+.. +.++.+-.. + +...-+..+++..|. +
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~---~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISG---NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhc---CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 344555667788888888888754322 111111000 0 011123445544554 3
Q ss_pred cc--ccccccCCCCccEEecCCCCCcCccCc-c-cccCCCCCeEEcCCCCCCccCccc-c-cCCcCCcccCceeecCccC
Q 043450 377 ES--LPETLCELYNLQKLDIRRCQDLRELPT-G-IGKLKNMRSLLNGDTSSLKYLPIG-I-SRLTSLRTLEKFVVGGGVD 450 (561)
Q Consensus 377 ~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~-~-~~~l~~L~~L~l~~~~~~~~lp~~-i-~~l~~L~~L~~~~~~~~~~ 450 (561)
+. +-..-..+..||.|+.++|..+...+- . ..+..+|+.|.++.|+..+..-.. + .+.+.|+.+++-.++....
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 31 111123467889999999886554432 1 235678999999998865443211 1 4566788887444443332
Q ss_pred CCCccCchhh-hccCCCCceEEcCCCCCCCcch-hhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCC
Q 043450 451 GNNTCRLESL-KNLQLLRECRVEGLSNVSHVDE-AERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQP 528 (561)
Q Consensus 451 ~~~~~~~~~l-~~L~~L~~l~i~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~ 528 (561)
+ .+..+ .+.+.|+.+.++.++...+.+. .+...-..+..|+.|.|+.+. ...+..++.+..
T Consensus 362 ~----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p-------------~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 362 G----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP-------------LITDATLEHLSI 424 (483)
T ss_pred h----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC-------------CchHHHHHHHhh
Confidence 1 23333 2356677777766554433211 112223456788888888665 457778888888
Q ss_pred CCCCceEEEeecCCC-C--CChhhhcccCCcEE
Q 043450 529 PVNVEELWIVYYGGN-I--FPKWLTLLTNLRDL 558 (561)
Q Consensus 529 ~~~L~~L~l~~~~~~-~--lp~~~~~l~~L~~L 558 (561)
+++|+.+++.++... + +-..-.++|+++..
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 999999999888732 2 11122466666543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.50 E-value=0.0035 Score=55.49 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=73.5
Q ss_pred cCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccccc-CCCCCeEEcCCCCCCccCcc--cccCCcCCcc
Q 043450 363 LIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGK-LKNMRSLLNGDTSSLKYLPI--GISRLTSLRT 439 (561)
Q Consensus 363 l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~ 439 (561)
+.+...+||+.|.+..++ .+..+..|.+|.+++|+ +..+-+.+.. +++|..|.+.+|+ +..+-+ .+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 346778999999977664 46788999999999998 7777555554 5679999999887 444422 2456777887
Q ss_pred cCceeecCccCCCCccCchhhhccCCCCceEEcCC
Q 043450 440 LEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGL 474 (561)
Q Consensus 440 L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~ 474 (561)
|. +.+|..........--+-.+++|+.|++.++
T Consensus 118 Lt--ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LT--LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ee--ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 76 5566554444444444556666666666554
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.31 E-value=0.002 Score=35.45 Aligned_cols=19 Identities=42% Similarity=0.849 Sum_probs=10.4
Q ss_pred cCEEecCCCCCcccccccc
Q 043450 366 LKYLNLSGLRIESLPETLC 384 (561)
Q Consensus 366 L~~L~l~~~~l~~lp~~i~ 384 (561)
|++|++++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555444
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.0023 Score=59.97 Aligned_cols=202 Identities=20% Similarity=0.099 Sum_probs=102.2
Q ss_pred HhccccccEEeccCCCCCCCCCccccccc---CccccccCccCEEecCCCCCccccccc-cCCCCccEEecCCCCCcC-c
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREI---PENVEKLIHLKYLNLSGLRIESLPETL-CELYNLQKLDIRRCQDLR-E 402 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~-~ 402 (561)
-.....++.|||.+ |.+... -.-+.+|++|++|+|+.|.+..-..+. -.+.+|++|-|.+...-. .
T Consensus 67 ~~~~~~v~elDL~~---------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~ 137 (418)
T KOG2982|consen 67 GSSVTDVKELDLTG---------NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQ 137 (418)
T ss_pred HHHhhhhhhhhccc---------chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhh
Confidence 34577788888888 555433 233467888889999888765332222 356788888888766332 2
Q ss_pred cCcccccCCCCCeEEcCCCCCCccCc---ccccCC-cCCcccCceeecCccCCCCccCchhhhc-cCCCCceEEcCCCCC
Q 043450 403 LPTGIGKLKNMRSLLNGDTSSLKYLP---IGISRL-TSLRTLEKFVVGGGVDGNNTCRLESLKN-LQLLRECRVEGLSNV 477 (561)
Q Consensus 403 lp~~~~~l~~L~~L~l~~~~~~~~lp---~~i~~l-~~L~~L~~~~~~~~~~~~~~~~~~~l~~-L~~L~~l~i~~~~~~ 477 (561)
....+..++.++.|.++.|+ +..+- ..+... +.+++|. ..++.. ........+.. .+++..+.+..+.-
T Consensus 138 ~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh--~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~Pl- 211 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLH--QLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGPL- 211 (418)
T ss_pred hhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhh--cCCcHH--HHHHHHHhHHhhcccchheeeecCcc-
Confidence 33455667777777777764 21110 111111 1344443 222211 00111112221 12233222322210
Q ss_pred CCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC-C----C--hhhh
Q 043450 478 SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI-F----P--KWLT 550 (561)
Q Consensus 478 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~-l----p--~~~~ 550 (561)
...........++.+--|+|+.+++.++ .-.+.+..+++|..|.+.++++.. + + --|+
T Consensus 212 --K~~s~ek~se~~p~~~~LnL~~~~idsw-------------asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 212 --KTESSEKGSEPFPSLSCLNLGANNIDSW-------------ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred --cchhhcccCCCCCcchhhhhcccccccH-------------HHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 0111112233445555667776665443 123345667788888888877532 1 1 1236
Q ss_pred cccCCcEEE
Q 043450 551 LLTNLRDLN 559 (561)
Q Consensus 551 ~l~~L~~L~ 559 (561)
+|++++.|+
T Consensus 277 RL~~v~vLN 285 (418)
T KOG2982|consen 277 RLTKVQVLN 285 (418)
T ss_pred eccceEEec
Confidence 788887775
No 62
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.01 E-value=0.045 Score=62.86 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=101.2
Q ss_pred CCCcEEEEEcCchHHH--hhcC-CcceEeCC----CCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhH
Q 043450 3 LPGSKIVVTTRNVSVA--RMMR-STNIISIK----PLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAA 75 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~--~~~~-~~~~~~v~----~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal 75 (561)
.++-++|||||...-. .... .+...++. +++.+|+.++|...... .. -.+.+.++.+.|+|.|+++
T Consensus 150 ~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~---~~----~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 150 PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS---PI----EAAESSRLCDDVEGWATAL 222 (903)
T ss_pred CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC---CC----CHHHHHHHHHHhCChHHHH
Confidence 3566888999984211 1111 13355666 99999999999765421 11 1234788999999999999
Q ss_pred HHHhhhccccccccccCCcchhHHHHHHHhhhhhhhhh-hcccccchhh-hcccCCCCChhhhhhhhhhcccCCCcccCH
Q 043450 76 KVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEE-IKQGLLAPLL-LSYNDLPSNSMVKRCFSYCAVFPKDYNMNK 153 (561)
Q Consensus 76 ~~~g~~L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~~ 153 (561)
..++..+.+.... . ....|. +.. ....+...+. -.++.||+ ..++.+...|+++ . ++
T Consensus 223 ~l~~~~~~~~~~~----~--~~~~~~---------~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~-~--~~- 281 (903)
T PRK04841 223 QLIALSARQNNSS----L--HDSARR---------LAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLR-S--MN- 281 (903)
T ss_pred HHHHHHHhhCCCc----h--hhhhHh---------hcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhcccc-c--CC-
Confidence 9998775432210 0 000010 000 0111222222 23778998 7899999999986 3 33
Q ss_pred HHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHHHhh
Q 043450 154 RELINLWMAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQFVS 220 (561)
Q Consensus 154 ~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~~i~ 220 (561)
..+...- ... ..+...++.|...+++.....+. + . +|+.|++++++.+...
T Consensus 282 ~~l~~~l-----~~~-------~~~~~~L~~l~~~~l~~~~~~~~-~--~-~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 282 DALIVRV-----TGE-------ENGQMRLEELERQGLFIQRMDDS-G--E-WFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHH-----cCC-------CcHHHHHHHHHHCCCeeEeecCC-C--C-EEehhHHHHHHHHHHH
Confidence 2222211 111 12466789999999865322111 1 1 3889999999988764
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.00054 Score=63.36 Aligned_cols=101 Identities=24% Similarity=0.255 Sum_probs=62.9
Q ss_pred hccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCc--c
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPT--G 406 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~ 406 (561)
+.+.+.+.|+.-+| .+..+.- +.+|+.|+.|.|+-|+|+++ ..+..+++|+.|.|+.|. +..+-+ -
T Consensus 16 sdl~~vkKLNcwg~---------~L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~Y 83 (388)
T KOG2123|consen 16 SDLENVKKLNCWGC---------GLDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEY 83 (388)
T ss_pred hHHHHhhhhcccCC---------CccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 34556666666663 3333321 34677777777777777766 346777777777777766 555543 3
Q ss_pred cccCCCCCeEEcCCCCCCccCccc-----ccCCcCCcccC
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIG-----ISRLTSLRTLE 441 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~-----i~~l~~L~~L~ 441 (561)
+.++++|+.|.|..|...+.-+.. +.-|++|+.|+
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 567777777777777655544322 34566666665
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0053 Score=56.66 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=55.3
Q ss_pred cccCccCEEecCCCCCccccccccCCCCccEEecCCC--CCcCccCcccccCCCCCeEEcCCCCCCccCcccc---cCCc
Q 043450 361 EKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRC--QDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGI---SRLT 435 (561)
Q Consensus 361 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i---~~l~ 435 (561)
-.+..|+.|.+.++.++++ ..+..|++|+.|+++.| +....++....++++|++|++++|.+ +. +.++ ..+.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccchhhhhc
Confidence 3455677777777776544 23556889999999999 65566766667779999999999983 32 3333 4555
Q ss_pred CCcccCce
Q 043450 436 SLRTLEKF 443 (561)
Q Consensus 436 ~L~~L~~~ 443 (561)
+|..|+++
T Consensus 117 nL~~Ldl~ 124 (260)
T KOG2739|consen 117 NLKSLDLF 124 (260)
T ss_pred chhhhhcc
Confidence 66666643
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.74 E-value=0.0011 Score=64.99 Aligned_cols=215 Identities=20% Similarity=0.117 Sum_probs=109.9
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCccccccc-Ccc-ccccCccCEEecCCCC-Ccc--ccccccCCCCccEEecC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREI-PEN-VEKLIHLKYLNLSGLR-IES--LPETLCELYNLQKLDIR 395 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~-~~~l~~L~~L~l~~~~-l~~--lp~~i~~L~~L~~L~l~ 395 (561)
...+.++-..+.+|+.|++..|. .++.. -.. ....++|+||++++|. |+. +-.-..+++.++.+-++
T Consensus 179 d~s~~sla~~C~~l~~l~L~~c~--------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k 250 (483)
T KOG4341|consen 179 DSSLLSLARYCRKLRHLNLHSCS--------SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK 250 (483)
T ss_pred HHHHHHHHHhcchhhhhhhcccc--------hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc
Confidence 34455555678899999999874 33322 121 2346899999999997 542 32334556666676666
Q ss_pred CCCCcCccCccc------------------------------ccCCCCCeEEcCCCCCCccCccc--ccCCcCCcccCce
Q 043450 396 RCQDLRELPTGI------------------------------GKLKNMRSLLNGDTSSLKYLPIG--ISRLTSLRTLEKF 443 (561)
Q Consensus 396 ~~~~~~~lp~~~------------------------------~~l~~L~~L~l~~~~~~~~lp~~--i~~l~~L~~L~~~ 443 (561)
+|.-.. +. .+ ..+..|+.|+.++|......+-. ..+..+|++|.+.
T Consensus 251 GC~e~~-le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~ 328 (483)
T KOG4341|consen 251 GCLELE-LE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS 328 (483)
T ss_pred cccccc-HH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc
Confidence 654111 10 01 12334455555555433222211 2344566666532
Q ss_pred eecCccCCCCccCchhhhc-cCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHH
Q 043450 444 VVGGGVDGNNTCRLESLKN-LQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQL 522 (561)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~-L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~ 522 (561)
.+..-. ...+..+.. ...|+.+++.++..... ..+...-.+++.|+.|.++.+.....+ -...+
T Consensus 329 ~c~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sls~~C~~lr~lslshce~itD~---------gi~~l 393 (483)
T KOG4341|consen 329 GCQQFS----DRGFTMLGRNCPHLERLDLEECGLITD--GTLASLSRNCPRLRVLSLSHCELITDE---------GIRHL 393 (483)
T ss_pred ccchhh----hhhhhhhhcCChhhhhhcccccceehh--hhHhhhccCCchhccCChhhhhhhhhh---------hhhhh
Confidence 222211 112222322 33455555544433221 122222346788888888866522210 01112
Q ss_pred hhcCCCCCCCceEEEeecCCCC--CChhhhcccCCcEEEc
Q 043450 523 LEALQPPVNVEELWIVYYGGNI--FPKWLTLLTNLRDLNL 560 (561)
Q Consensus 523 ~~~l~~~~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~L 560 (561)
-..-+.+..|..|.+++++... .-..+..+++|+.++|
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 2233567789999999998532 2234467888887664
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.55 E-value=0.014 Score=54.06 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=11.9
Q ss_pred ccccCceeEEEEccCCC
Q 043450 261 FFEFDRLRSLLIYDTSH 277 (561)
Q Consensus 261 ~~~~~~Lr~L~~~~~~~ 277 (561)
+..+..+..+.++++++
T Consensus 26 l~~~d~~~evdLSGNti 42 (388)
T COG5238 26 LEMMDELVEVDLSGNTI 42 (388)
T ss_pred HHhhcceeEEeccCCcc
Confidence 34467788888888843
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0018 Score=60.04 Aligned_cols=81 Identities=28% Similarity=0.281 Sum_probs=66.7
Q ss_pred HHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccc--ccccCCCCccEEecCCCCCcCccC
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLP--ETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
.+.+|+.|++|.|+- |.|..+-+ +..+++|+.|+|+.|.|..+- ..+.+|++|++|.|..|+....-+
T Consensus 36 ic~kMp~lEVLsLSv---------NkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSV---------NKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHHhcccceeEEeec---------cccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 356899999999999 88888744 788999999999999988664 457899999999999988666555
Q ss_pred cc-----cccCCCCCeEE
Q 043450 405 TG-----IGKLKNMRSLL 417 (561)
Q Consensus 405 ~~-----~~~l~~L~~L~ 417 (561)
.. +.-|++|+.||
T Consensus 106 ~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 106 QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHHHHHHHHcccchhcc
Confidence 43 56789999986
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0086 Score=32.86 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=12.4
Q ss_pred CccEEecCCCCCcCccCccccc
Q 043450 388 NLQKLDIRRCQDLRELPTGIGK 409 (561)
Q Consensus 388 ~L~~L~l~~~~~~~~lp~~~~~ 409 (561)
+|++||+++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 36666666664 5566665443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.24 E-value=0.017 Score=53.38 Aligned_cols=112 Identities=26% Similarity=0.266 Sum_probs=74.6
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCC--CCc-cccccccCCCCccEEecCCCCCc
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGL--RIE-SLPETLCELYNLQKLDIRRCQDL 400 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~ 400 (561)
+......+..|..|.+.++.. ..+.. +..|++|++|.++.| ++. .++..+-++++|++|++++|+ +
T Consensus 35 ~~gl~d~~~~le~ls~~n~gl------tt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i 103 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGL------TTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-I 103 (260)
T ss_pred cccccccccchhhhhhhccce------eeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-c
Confidence 334445566677777666321 22333 445789999999999 554 677667778999999999998 5
Q ss_pred CccC--cccccCCCCCeEEcCCCCCCccCc----ccccCCcCCcccCceeecC
Q 043450 401 RELP--TGIGKLKNMRSLLNGDTSSLKYLP----IGISRLTSLRTLEKFVVGG 447 (561)
Q Consensus 401 ~~lp--~~~~~l~~L~~L~l~~~~~~~~lp----~~i~~l~~L~~L~~~~~~~ 447 (561)
..+- ..+..+.+|..|++++|.... +- ..+.-+++|..|+.+.+..
T Consensus 104 ~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 104 KDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 4321 135677888899999988433 21 1245677888887555443
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.0074 Score=56.65 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=51.6
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCc--cccccccCCCCccEEecCCCC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIE--SLPETLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~ 398 (561)
++..-.++.+++.|++|+++.|+.. ..|..+| -.+.+|++|-|.|+.+. ..-..+..++.++.|.++.|.
T Consensus 86 WseI~~ile~lP~l~~LNls~N~L~-----s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCNSLS-----SDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHHHHHhcCccceEeeccCCcCC-----CccccCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 4556667789999999999994321 2344444 34678999999999864 556667788888888888774
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.31 E-value=0.028 Score=28.60 Aligned_cols=14 Identities=50% Similarity=0.672 Sum_probs=4.8
Q ss_pred cCEEecCCCCCccc
Q 043450 366 LKYLNLSGLRIESL 379 (561)
Q Consensus 366 L~~L~l~~~~l~~l 379 (561)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.56 E-value=0.31 Score=48.55 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=85.1
Q ss_pred CcEEEEEcCchHHHhhcC--CcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhhc
Q 043450 5 GSKIVVTTRNVSVARMMR--STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLL 82 (561)
Q Consensus 5 GsrIivTTR~~~v~~~~~--~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L 82 (561)
.+-|..|||...+...+. ...++++++++.++..+++.+.+-..+... -.+.+..|++.|+|.|=.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 445667777654443321 145799999999999999998875332222 23458899999999995444333321
Q ss_pred cccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhh-hhcccCCCcccCHHHHHHHHH
Q 043450 83 CDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFS-YCAVFPKDYNMNKRELINLWM 161 (561)
Q Consensus 83 ~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl-~~a~fp~~~~i~~~~Li~~w~ 161 (561)
..|-.......-. ...-......+...|..|++ ..+..+. ....|..+ .+..+.+...+
T Consensus 227 ---------------~~~a~~~~~~~I~-~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~~~~~~-~~~~~~~a~~l- 286 (328)
T PRK00080 227 ---------------RDFAQVKGDGVIT-KEIADKALDMLGVDELGLDE--MDRKYLRTIIEKFGGG-PVGLDTLAAAL- 286 (328)
T ss_pred ---------------HHHHHHcCCCCCC-HHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHHHcCCC-ceeHHHHHHHH-
Confidence 1121111000000 00111222335677788887 5666664 55556544 24444433222
Q ss_pred HcCCCCCCcchhHHHHHHHHHH-HHHhcCCcccc
Q 043450 162 AQGYLNADEDEEMEMIGEEYFN-ILATRSFFQEF 194 (561)
Q Consensus 162 a~g~~~~~~~~~~~~~~~~~l~-~L~~~~ll~~~ 194 (561)
... ...+++.+. .|++.+|++..
T Consensus 287 -----g~~-----~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 287 -----GEE-----RDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred -----CCC-----cchHHHHhhHHHHHcCCcccC
Confidence 111 223444455 89999999643
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.36 E-value=0.038 Score=28.06 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=10.1
Q ss_pred CCCceEEEeecCCCCCC
Q 043450 530 VNVEELWIVYYGGNIFP 546 (561)
Q Consensus 530 ~~L~~L~l~~~~~~~lp 546 (561)
++|+.|++++|.+..+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46888888888877766
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.35 E-value=0.027 Score=59.30 Aligned_cols=111 Identities=25% Similarity=0.241 Sum_probs=63.3
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCccccccc----CccccccCccCEEecCCCC-Cccc-ccccc-CCCCccEEecCC
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIREI----PENVEKLIHLKYLNLSGLR-IESL-PETLC-ELYNLQKLDIRR 396 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l----p~~~~~l~~L~~L~l~~~~-l~~l-p~~i~-~L~~L~~L~l~~ 396 (561)
.......+..|+.|++++|. ..+... +.....+.+|+.|+++++. ++.. -..+. .+++|++|.+.+
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~ 278 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCC-------LLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSN 278 (482)
T ss_pred HHHHHhhCchhheecccCcc-------cccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCC
Confidence 34445678888888888631 111111 1122345788888888887 5522 22233 377888888887
Q ss_pred CCCcC--ccCcccccCCCCCeEEcCCCCCCcc--CcccccCCcCCcccC
Q 043450 397 CQDLR--ELPTGIGKLKNMRSLLNGDTSSLKY--LPIGISRLTSLRTLE 441 (561)
Q Consensus 397 ~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~i~~l~~L~~L~ 441 (561)
|..++ .+-.....+++|++|++++|..+.. +.....++++|+.|.
T Consensus 279 c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 279 CSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred CCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 77432 2223345677788888888875422 222233455555544
No 75
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.99 E-value=0.4 Score=47.16 Aligned_cols=73 Identities=21% Similarity=0.115 Sum_probs=49.2
Q ss_pred CcEEEEEcCchHHHhhc--CCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhh
Q 043450 5 GSKIVVTTRNVSVARMM--RSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNL 81 (561)
Q Consensus 5 GsrIivTTR~~~v~~~~--~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~ 81 (561)
.+-|.+|||...+...+ ....++++++++.++..+++.+.+-..... --.+....|++.|+|.|-.+..++..
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45566778775554332 124578999999999999999887432221 12345788999999999655544443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.52 E-value=0.0067 Score=54.88 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=66.6
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..++...+||++. +.+..+-..++.++.|..|+++.+.+.-+|..++.+..+..+++..|. ....|.++
T Consensus 38 i~~~kr~tvld~~s---------~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 38 IASFKRVTVLDLSS---------NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hhccceeeeehhhh---------hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 45677788888887 666666677777888888888888888888888888888888877766 77888888
Q ss_pred ccCCCCCeEEcCCCC
Q 043450 408 GKLKNMRSLLNGDTS 422 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~ 422 (561)
+.++.++++++-++.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 888888888777665
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.42 E-value=0.0075 Score=54.57 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=75.5
Q ss_pred ccccC-ccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccc
Q 043450 353 IREIP-ENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGI 431 (561)
Q Consensus 353 ~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i 431 (561)
+.++| ..|.....-+.||++.|++..+-..++.++.|..||++.|. +..+|..++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44444 33566788999999999998888889999999999999988 89999999999999999887776 88999999
Q ss_pred cCCcCCcccC
Q 043450 432 SRLTSLRTLE 441 (561)
Q Consensus 432 ~~l~~L~~L~ 441 (561)
++++.++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999999987
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.63 E-value=0.19 Score=28.71 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=10.2
Q ss_pred CccCEEecCCCCCcccccc
Q 043450 364 IHLKYLNLSGLRIESLPET 382 (561)
Q Consensus 364 ~~L~~L~l~~~~l~~lp~~ 382 (561)
++|++|+|++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.63 E-value=0.19 Score=28.71 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=10.2
Q ss_pred CccCEEecCCCCCcccccc
Q 043450 364 IHLKYLNLSGLRIESLPET 382 (561)
Q Consensus 364 ~~L~~L~l~~~~l~~lp~~ 382 (561)
++|++|+|++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 80
>PRK06893 DNA replication initiation factor; Validated
Probab=89.12 E-value=0.97 Score=42.33 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=49.9
Q ss_pred CCcEEEEEcCc----------hHHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChh
Q 043450 4 PGSKIVVTTRN----------VSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPL 73 (561)
Q Consensus 4 ~GsrIivTTR~----------~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPL 73 (561)
.|+.|||||.+ .++...+....++++++++.++.++++.+.++..+-.. -+++..-+++++.|-.=
T Consensus 123 ~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l----~~~v~~~L~~~~~~d~r 198 (229)
T PRK06893 123 QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL----SDEVANFLLKRLDRDMH 198 (229)
T ss_pred cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHH
Confidence 36666555444 46666677778999999999999999999987443222 23457788888887665
Q ss_pred hHHHH
Q 043450 74 AAKVT 78 (561)
Q Consensus 74 al~~~ 78 (561)
++..+
T Consensus 199 ~l~~~ 203 (229)
T PRK06893 199 TLFDA 203 (229)
T ss_pred HHHHH
Confidence 55433
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.43 E-value=0.14 Score=53.80 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=34.2
Q ss_pred cCccCEEecCCCC-Ccc--ccccccCCCCccEEecCCC-CCcCccC----cccccCCCCCeEEcCCCC
Q 043450 363 LIHLKYLNLSGLR-IES--LPETLCELYNLQKLDIRRC-QDLRELP----TGIGKLKNMRSLLNGDTS 422 (561)
Q Consensus 363 l~~L~~L~l~~~~-l~~--lp~~i~~L~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~L~l~~~~ 422 (561)
.+.|+.|.+.++. +.. +-+....+++|+.|++++| ......+ .....+++|+.|+++.+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 5677777777775 443 3345566778888888763 2222222 122334566666666655
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.42 E-value=0.14 Score=45.58 Aligned_cols=63 Identities=30% Similarity=0.353 Sum_probs=36.5
Q ss_pred ccccccCccCEEecCCCC-Cc-ccccccc-CCCCccEEecCCCCCcCccC-cccccCCCCCeEEcCC
Q 043450 358 ENVEKLIHLKYLNLSGLR-IE-SLPETLC-ELYNLQKLDIRRCQDLRELP-TGIGKLKNMRSLLNGD 420 (561)
Q Consensus 358 ~~~~~l~~L~~L~l~~~~-l~-~lp~~i~-~L~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~ 420 (561)
+.+..++.++.|.+.+|. +. .--+-++ -.++|+.|++++|+.+++-- ..+.++++|+.|.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 345566667777777775 43 1112233 23677788888777665442 2455666666666544
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.37 E-value=0.53 Score=26.77 Aligned_cols=21 Identities=19% Similarity=0.015 Sum_probs=17.6
Q ss_pred CCCCceEEEeecCCCCCChhh
Q 043450 529 PVNVEELWIVYYGGNIFPKWL 549 (561)
Q Consensus 529 ~~~L~~L~l~~~~~~~lp~~~ 549 (561)
+++|+.|++++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998764
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.37 E-value=0.53 Score=26.77 Aligned_cols=21 Identities=19% Similarity=0.015 Sum_probs=17.6
Q ss_pred CCCCceEEEeecCCCCCChhh
Q 043450 529 PVNVEELWIVYYGGNIFPKWL 549 (561)
Q Consensus 529 ~~~L~~L~l~~~~~~~lp~~~ 549 (561)
+++|+.|++++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998764
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.00 E-value=1.7 Score=36.20 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=20.8
Q ss_pred cccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcC
Q 043450 361 EKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNG 419 (561)
Q Consensus 361 ~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~ 419 (561)
..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.. . +..++. .+..+++|+.+.+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTECEEEET
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccccccccccccccC
Confidence 34444555555443 443332 234444555555543 1 333332 23334555555554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.83 E-value=0.59 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.7
Q ss_pred CCCCceEEEeecCCCCCCh
Q 043450 529 PVNVEELWIVYYGGNIFPK 547 (561)
Q Consensus 529 ~~~L~~L~l~~~~~~~lp~ 547 (561)
+++|+.|++++|.++.+|+
T Consensus 1 P~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 1 PPSLKELNVSNNQLTSLPE 19 (26)
T ss_pred CcccceeecCCCccccCcc
Confidence 4679999999999999996
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.61 E-value=3.8 Score=33.95 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=41.5
Q ss_pred ccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCCCCccCcc-cccCCcC
Q 043450 360 VEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTSSLKYLPI-GISRLTS 436 (561)
Q Consensus 360 ~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~ 436 (561)
|....+|+.+.+.. .++.++. .+..+++|+.+.+..+ +..++. .+.++.+++.+.+.+ . +..++. .+..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-c-cccccccccccccc
Confidence 45566788888774 4666654 4667778888888763 666655 466676888888865 2 344443 3556777
Q ss_pred CcccC
Q 043450 437 LRTLE 441 (561)
Q Consensus 437 L~~L~ 441 (561)
|+.+.
T Consensus 83 l~~i~ 87 (129)
T PF13306_consen 83 LKNID 87 (129)
T ss_dssp ECEEE
T ss_pred ccccc
Confidence 77775
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.40 E-value=0.47 Score=42.41 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=52.2
Q ss_pred ccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCccC-cccc-cCCCCCeEEcCCCCCCccCc-cc
Q 043450 355 EIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLRELP-TGIG-KLKNMRSLLNGDTSSLKYLP-IG 430 (561)
Q Consensus 355 ~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~~~-~l~~L~~L~l~~~~~~~~lp-~~ 430 (561)
.+|.....-..++.++.+++.|. +--..+.+++.++.|.+.+|..+...- +.++ -.++|+.|++++|..++.-- ..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 34433233356888999998876 334567788888888888887554321 1122 34578888888777554321 22
Q ss_pred ccCCcCCcccC
Q 043450 431 ISRLTSLRTLE 441 (561)
Q Consensus 431 i~~l~~L~~L~ 441 (561)
+..+++|+.|.
T Consensus 172 L~~lknLr~L~ 182 (221)
T KOG3864|consen 172 LLKLKNLRRLH 182 (221)
T ss_pred HHHhhhhHHHH
Confidence 44555555554
No 89
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=75.23 E-value=11 Score=34.96 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=30.4
Q ss_pred ceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHH
Q 043450 25 NIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKV 77 (561)
Q Consensus 25 ~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~ 77 (561)
..+.+++++.+++++++...+-.. ... +.-.+..++|.+.+||.|..|.-
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence 469999999999999998875322 111 11234468999999999988753
No 90
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.28 E-value=35 Score=37.75 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=99.9
Q ss_pred CCCcEEEEEcCchHHHhh--cC-CcceEeCC----CCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhH
Q 043450 3 LPGSKIVVTTRNVSVARM--MR-STNIISIK----PLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAA 75 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~~~--~~-~~~~~~v~----~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal 75 (561)
-+|=..|||||.+--..- +. .+...++. .++.+|+-++|.... ....+..+ ++.+.++.+|=+-|+
T Consensus 158 P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~----~~~L~~~teGW~~al 230 (894)
T COG2909 158 PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SLPLDAAD----LKALYDRTEGWAAAL 230 (894)
T ss_pred CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CCCCChHH----HHHHHhhcccHHHHH
Confidence 457789999999732211 11 12233332 468899999997654 12222223 678888889999999
Q ss_pred HHHhhhccccccccccCCcchhHHHHHHHh---hhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcccC
Q 043450 76 KVTGNLLCDKRTGNLLSSKSIVNEWQRILD---SEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMN 152 (561)
Q Consensus 76 ~~~g~~L~~~~~~~~l~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~ 152 (561)
..++=.+++... .+.--..+. +..++. ...--++.||+ ++|..++-+|+++.=
T Consensus 231 ~L~aLa~~~~~~---------~~q~~~~LsG~~~~l~dY---------L~eeVld~Lp~--~l~~FLl~~svl~~f---- 286 (894)
T COG2909 231 QLIALALRNNTS---------AEQSLRGLSGAASHLSDY---------LVEEVLDRLPP--ELRDFLLQTSVLSRF---- 286 (894)
T ss_pred HHHHHHccCCCc---------HHHHhhhccchHHHHHHH---------HHHHHHhcCCH--HHHHHHHHHHhHHHh----
Confidence 888866542211 111111111 000010 01123678998 788888888887431
Q ss_pred HHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHHHhhc
Q 043450 153 KRELINLWMAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQFVSR 221 (561)
Q Consensus 153 ~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~~i~~ 221 (561)
.+.|+....+ ++.+..++++|.+++++...-++... +|+.|.++.+|-+.--.
T Consensus 287 ~~eL~~~Ltg------------~~ng~amLe~L~~~gLFl~~Ldd~~~----WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 287 NDELCNALTG------------EENGQAMLEELERRGLFLQRLDDEGQ----WFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred hHHHHHHHhc------------CCcHHHHHHHHHhCCCceeeecCCCc----eeehhHHHHHHHHhhhc
Confidence 2344433322 23366789999999987643333322 39999999999875443
No 91
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=67.30 E-value=13 Score=35.64 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=42.2
Q ss_pred ceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhhc
Q 043450 25 NIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLL 82 (561)
Q Consensus 25 ~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L 82 (561)
..+++++++.+|..+++...+-.........--.+..+.|++.|+|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4689999999999999887653222111111224678899999999999999988774
No 92
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=66.12 E-value=1.6e+02 Score=29.97 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=85.6
Q ss_pred EEEEcCchHHHhhcC-------CcceEeCCCCChhhhHHHHHHHhcCC--CCCCCCCCHHHHHHHHHHHcCCChhhHHHH
Q 043450 8 IVVTTRNVSVARMMR-------STNIISIKPLPEDEFWSLFERFAFFG--HSSVDREKLEPIARQIARKCKGLPLAAKVT 78 (561)
Q Consensus 8 IivTTR~~~v~~~~~-------~~~~~~v~~L~~~~a~~Lf~~~a~~~--~~~~~~~~~~~~~~~iv~~c~GlPLal~~~ 78 (561)
||.++.+..+..... ....+.++|++.++..+++...+-.+ ....+.+.++.+++.+....|..+.|+.++
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll 255 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLL 255 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666766654433221 12478999999999999998775221 112233444555555555567788888877
Q ss_pred hhhc--cccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCC--CcccCHH
Q 043450 79 GNLL--CDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPK--DYNMNKR 154 (561)
Q Consensus 79 g~~L--~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~--~~~i~~~ 154 (561)
-.+. +... ....-+.+..+.+.+... .....-.+..|+. ..|..+..++..-. ...+...
T Consensus 256 ~~a~~~a~~~----~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~~~~ 319 (394)
T PRK00411 256 RRAGLIAERE----GSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEVTTG 319 (394)
T ss_pred HHHHHHHHHc----CCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcccHH
Confidence 5432 1111 011123444444443321 1123445778887 43443333332211 1234444
Q ss_pred HHHHH--HHHcCC-CCCCcchhHHHHHHHHHHHHHhcCCccccc
Q 043450 155 ELINL--WMAQGY-LNADEDEEMEMIGEEYFNILATRSFFQEFE 195 (561)
Q Consensus 155 ~Li~~--w~a~g~-~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 195 (561)
++... .+++.+ +.+.. ......++..|.+.+++....
T Consensus 320 ~i~~~y~~l~~~~~~~~~~----~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 320 EVYEEYKELCEELGYEPRT----HTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred HHHHHHHHHHHHcCCCcCc----HHHHHHHHHHHHhcCCeEEEE
Confidence 44432 222211 11111 122355899999999998654
No 93
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=64.08 E-value=2.1 Score=23.72 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=4.7
Q ss_pred ccCEEecCCCCC
Q 043450 365 HLKYLNLSGLRI 376 (561)
Q Consensus 365 ~L~~L~l~~~~l 376 (561)
+|++|++++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444444
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.33 E-value=5.4 Score=22.59 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=7.9
Q ss_pred CCccEEecCCCCCc
Q 043450 387 YNLQKLDIRRCQDL 400 (561)
Q Consensus 387 ~~L~~L~l~~~~~~ 400 (561)
++|+.|++++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45666666666543
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.51 E-value=6 Score=22.63 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=6.2
Q ss_pred CccCEEecCCCCC
Q 043450 364 IHLKYLNLSGLRI 376 (561)
Q Consensus 364 ~~L~~L~l~~~~l 376 (561)
++|+.|+++.|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3444455555444
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=61.91 E-value=24 Score=32.65 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=46.7
Q ss_pred CcEEEEEcCch---------HHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhH
Q 043450 5 GSKIVVTTRNV---------SVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAA 75 (561)
Q Consensus 5 GsrIivTTR~~---------~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal 75 (561)
+.+||+||+.. .+...+.....+++++++.++-..++...+-..... --++....+++.+.|.|..+
T Consensus 123 ~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L 198 (226)
T TIGR03420 123 GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSL 198 (226)
T ss_pred CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHH
Confidence 45889998753 222233334689999999999999998765221111 12345677778889888777
Q ss_pred HHHhh
Q 043450 76 KVTGN 80 (561)
Q Consensus 76 ~~~g~ 80 (561)
.-+-.
T Consensus 199 ~~~l~ 203 (226)
T TIGR03420 199 MALLD 203 (226)
T ss_pred HHHHH
Confidence 55543
No 97
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=58.63 E-value=0.11 Score=54.15 Aligned_cols=196 Identities=23% Similarity=0.140 Sum_probs=105.0
Q ss_pred ccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcc-----ccccccCC-CCccEEecCCCCCcC----
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIES-----LPETLCEL-YNLQKLDIRRCQDLR---- 401 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L-~~L~~L~l~~~~~~~---- 401 (561)
..+..|.|.+|..-. .....+-..+..+.+|..|++++|.+.. +-..+... ..|++|++..|....
T Consensus 87 ~~l~~L~L~~~~l~~----~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~ 162 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGD----RGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA 162 (478)
T ss_pred hhHHHhhhhhCcccc----chHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH
Confidence 337778888742111 1122233445667889999999998751 22233333 567778888876222
Q ss_pred ccCcccccCCCCCeEEcCCCCCCc----cCccc----ccCCcCCcccCceeecCccCCCCcc-CchhhhccCC-CCceEE
Q 043450 402 ELPTGIGKLKNMRSLLNGDTSSLK----YLPIG----ISRLTSLRTLEKFVVGGGVDGNNTC-RLESLKNLQL-LRECRV 471 (561)
Q Consensus 402 ~lp~~~~~l~~L~~L~l~~~~~~~----~lp~~----i~~l~~L~~L~~~~~~~~~~~~~~~-~~~~l~~L~~-L~~l~i 471 (561)
.+...+.....++.++++.|.... .++.. +....++++|+ +.++..+..... .-..+...+. +..+++
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~--L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLK--LSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHh--hhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 234455566778888888877421 12222 33466788887 444433211100 1111223333 233333
Q ss_pred cCCCCCCCcchhhhcccccc-cccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 472 EGLSNVSHVDEAERLQLYNK-KNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 472 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
................+... ..++.++++.|.+.+.. ...+.+.+..+++++.|.+++|.+.
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~----------~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG----------VRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc----------hHHHHHHHhhhHHHHHhhcccCccc
Confidence 32111111122333344444 67788888888765542 4556666777778888888888753
No 98
>PRK09087 hypothetical protein; Validated
Probab=55.99 E-value=26 Score=32.68 Aligned_cols=70 Identities=9% Similarity=0.104 Sum_probs=49.9
Q ss_pred CCcEEEEEcCc---------hHHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhh
Q 043450 4 PGSKIVVTTRN---------VSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLA 74 (561)
Q Consensus 4 ~GsrIivTTR~---------~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLa 74 (561)
.|..||+|++. .++.-.+.+..++++++++.++-.+++.+.+-... . .--+++..-|++++.|-.-+
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~-~---~l~~ev~~~La~~~~r~~~~ 191 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ-L---YVDPHVVYYLVSRMERSLFA 191 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHhhhhHHH
Confidence 47789999873 34444556678999999999999999998874321 1 12245677788888887766
Q ss_pred HHH
Q 043450 75 AKV 77 (561)
Q Consensus 75 l~~ 77 (561)
+..
T Consensus 192 l~~ 194 (226)
T PRK09087 192 AQT 194 (226)
T ss_pred HHH
Confidence 654
No 99
>PRK08727 hypothetical protein; Validated
Probab=55.32 E-value=33 Score=32.06 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=45.9
Q ss_pred CCcEEEEEcCch---------HHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhh
Q 043450 4 PGSKIVVTTRNV---------SVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLA 74 (561)
Q Consensus 4 ~GsrIivTTR~~---------~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLa 74 (561)
.|..||+||+.. ++...+....++++++++.++-.+++.++|...+-.. -++....++++|+|-.-+
T Consensus 125 ~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l----~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 125 AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL----DEAAIDWLLTHGERELAG 200 (233)
T ss_pred cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHHH
Confidence 467799999852 3333334456999999999999999998775322212 234567788888765533
Q ss_pred H
Q 043450 75 A 75 (561)
Q Consensus 75 l 75 (561)
+
T Consensus 201 ~ 201 (233)
T PRK08727 201 L 201 (233)
T ss_pred H
Confidence 3
No 100
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=53.88 E-value=0.44 Score=49.66 Aligned_cols=200 Identities=21% Similarity=0.163 Sum_probs=122.1
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccc-----cCcccccc-CccCEEecCCCCCc-----cccccccCCCCc
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIRE-----IPENVEKL-IHLKYLNLSGLRIE-----SLPETLCELYNL 389 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----lp~~~~~l-~~L~~L~l~~~~l~-----~lp~~i~~L~~L 389 (561)
...+-..+.....|..|++++ |.+.. +-+.+-.. ..|++|++..|.++ .+...+.....+
T Consensus 104 ~~~l~~~l~t~~~L~~L~l~~---------n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l 174 (478)
T KOG4308|consen 104 AEELAQALKTLPTLGQLDLSG---------NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHL 174 (478)
T ss_pred HHHHHHHhcccccHhHhhccc---------CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccch
Confidence 345566677888999999999 44442 11222222 56788888888865 345667778999
Q ss_pred cEEecCCCCCcC----ccCcccc----cCCCCCeEEcCCCCCCc----cCcccccCCcC-CcccCceeecCccCCC-Ccc
Q 043450 390 QKLDIRRCQDLR----ELPTGIG----KLKNMRSLLNGDTSSLK----YLPIGISRLTS-LRTLEKFVVGGGVDGN-NTC 455 (561)
Q Consensus 390 ~~L~l~~~~~~~----~lp~~~~----~l~~L~~L~l~~~~~~~----~lp~~i~~l~~-L~~L~~~~~~~~~~~~-~~~ 455 (561)
+.+|++.|.... .++..+. ...++++|++.+|.... .+-..+...+. +..|+ ...|..... ...
T Consensus 175 ~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~--l~~n~l~d~g~~~ 252 (478)
T KOG4308|consen 175 TELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD--LASNKLGDVGVEK 252 (478)
T ss_pred hHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH--HHhcCcchHHHHH
Confidence 999999988431 2233344 46789999999988431 11122344444 55566 555554211 011
Q ss_pred Cchhhhcc-CCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCce
Q 043450 456 RLESLKNL-QLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEE 534 (561)
Q Consensus 456 ~~~~l~~L-~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~ 534 (561)
....+..+ ..++.+.+..++-...........+..+++++.|.++.|.+.+. ....+.+.+.....+..
T Consensus 253 L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~----------~~~~~~~~l~~~~~~~~ 322 (478)
T KOG4308|consen 253 LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY----------GVELLLEALERKTPLLH 322 (478)
T ss_pred HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH----------HHHHHHHHhhhcccchh
Confidence 11222333 34466666666655555566677788889999999998876432 24445555555556677
Q ss_pred EEEeecC
Q 043450 535 LWIVYYG 541 (561)
Q Consensus 535 L~l~~~~ 541 (561)
+.+.+++
T Consensus 323 ~~l~~~~ 329 (478)
T KOG4308|consen 323 LVLGGTG 329 (478)
T ss_pred hhccccC
Confidence 7776555
No 101
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.53 E-value=17 Score=21.04 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=8.1
Q ss_pred CccCEEecCCCCCc
Q 043450 364 IHLKYLNLSGLRIE 377 (561)
Q Consensus 364 ~~L~~L~l~~~~l~ 377 (561)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666553
No 102
>COG3903 Predicted ATPase [General function prediction only]
Probab=43.90 E-value=11 Score=37.97 Aligned_cols=175 Identities=18% Similarity=0.166 Sum_probs=100.6
Q ss_pred CCCcEEEEEcCchHHHhhcCCcceEeCCCCChh-hhHHHHHHHhcCCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHhh
Q 043450 3 LPGSKIVVTTRNVSVARMMRSTNIISIKPLPED-EFWSLFERFAFFGHS-SVDREKLEPIARQIARKCKGLPLAAKVTGN 80 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~~~~~~~~~~~v~~L~~~-~a~~Lf~~~a~~~~~-~~~~~~~~~~~~~iv~~c~GlPLal~~~g~ 80 (561)
.+.-.|+.|+|..-.. ..+.++.+++|..- ++.++|...|.-... ..-...-...+..|.++-.|.|++|...++
T Consensus 115 ~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaa 191 (414)
T COG3903 115 CPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAA 191 (414)
T ss_pred chhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHH
Confidence 4455677777765433 34778999999875 799999876642211 111123345678899999999999999888
Q ss_pred hccccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcccCHHHHHHHH
Q 043450 81 LLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLW 160 (561)
Q Consensus 81 ~L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w 160 (561)
..+.-.-..+.. .--+.|+..... ...-....+.....+..||--|.. ..+-.|--++.|...+... ...|
T Consensus 192 rv~sl~~~~i~~--~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtg--we~~~~~rLa~~~g~f~~~----l~~~ 262 (414)
T COG3903 192 RVRSLSPDEIAA--GLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTG--WERALFGRLAVFVGGFDLG----LALA 262 (414)
T ss_pred HHHhcCHHHHHH--HHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhh--HHHHHhcchhhhhhhhccc----HHHH
Confidence 754432111000 111223222222 111112456677889999999988 5677888888886665332 3445
Q ss_pred HHcCCCCCCcchhHHHHHHHHHHHHHhcCCccc
Q 043450 161 MAQGYLNADEDEEMEMIGEEYFNILATRSFFQE 193 (561)
Q Consensus 161 ~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 193 (561)
.+.|-..... ......-+..++++++...
T Consensus 263 ~a~g~~~~~~----~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 263 VAAGADVDVP----RYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred HhcCCccccc----hHHHHHHHHHHhhccchhh
Confidence 5544322111 1112223556677777654
No 103
>COG3899 Predicted ATPase [General function prediction only]
Probab=43.48 E-value=81 Score=35.92 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=101.1
Q ss_pred cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhhccccccccccCCcchhHHHHHH
Q 043450 24 TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLLCDKRTGNLLSSKSIVNEWQRI 103 (561)
Q Consensus 24 ~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~~l~~~~~~~~w~~~ 103 (561)
...+.+.||+..|...|...... ... ....+..+.|+++..|.|+-+.-+-..+.... ++....+...|..-
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~-~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~---~i~f~~~~~~w~~~ 282 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLG-CTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEG---LLVFNFDTGAWQCS 282 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhC-Ccc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCC---eeEecCCCcceecc
Confidence 46999999999999999977652 211 23445689999999999999988877765542 12223333334322
Q ss_pred HhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcccCHHHHHHHHHHcCCCCCCcchhHHHHHHHHHH
Q 043450 104 LDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMNKRELINLWMAQGYLNADEDEEMEMIGEEYFN 183 (561)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~ 183 (561)
..+.. .. .....+...+..-.+.||+ ..|+..-..||+-.. ++..-|...+.. .....+...++
T Consensus 283 ~~~i~-~~-~~~~~vv~~l~~rl~kL~~--~t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~ 346 (849)
T COG3899 283 IASLG-IL-ATTDAVVEFLAARLQKLPG--TTREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLD 346 (849)
T ss_pred HHhcC-Cc-hhhHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHH
Confidence 21110 00 1112233345666788988 789999999998654 455555555532 12344555566
Q ss_pred HHHhcCCcccccCCCCCCceeeE---EecHHHHHHHHHhhc
Q 043450 184 ILATRSFFQEFEKDDDDDDILRC---KMHDIVHDFAQFVSR 221 (561)
Q Consensus 184 ~L~~~~ll~~~~~~~~~~~~~~~---~mhdlv~~~~~~i~~ 221 (561)
.|....++...+....+...... -.||.+++-+.....
T Consensus 347 al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 347 ALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 66665555432211111111101 357887777765443
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=37.95 E-value=94 Score=29.05 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=46.2
Q ss_pred cEEEEEcCch---------HHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHH
Q 043450 6 SKIVVTTRNV---------SVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAK 76 (561)
Q Consensus 6 srIivTTR~~---------~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~ 76 (561)
.+||+||+.. ++.-.+.+..++++++++.++-.+++.++|-..+ . .--+++..-+++++.|---++.
T Consensus 132 ~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 132 TRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-F---ELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred CeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhhcCCHHHHH
Confidence 3799998754 3444455668999999999999999988664221 1 1224567788888887654443
No 105
>PRK06620 hypothetical protein; Validated
Probab=36.40 E-value=81 Score=29.04 Aligned_cols=66 Identities=9% Similarity=-0.006 Sum_probs=43.7
Q ss_pred CCCcEEEEEcCch-------HHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCCh
Q 043450 3 LPGSKIVVTTRNV-------SVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLP 72 (561)
Q Consensus 3 ~~GsrIivTTR~~-------~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlP 72 (561)
..|..||+|++.. ++...+.+..++++++++.++-.+++.+.+-.. .. .--+++..-|++++.|--
T Consensus 111 e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l---~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 111 EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SV---TISRQIIDFLLVNLPREY 183 (214)
T ss_pred hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHccCCH
Confidence 3577899998743 233334456799999999999888888776321 11 122456777777777654
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=30.56 E-value=1.3e+02 Score=30.39 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=41.6
Q ss_pred CCcEEEEEcCchHHH-----hhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCCh
Q 043450 4 PGSKIVVTTRNVSVA-----RMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLP 72 (561)
Q Consensus 4 ~GsrIivTTR~~~v~-----~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlP 72 (561)
.+.+||.||...+.. .....+..++++..+.++..++|..++...... +..+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 466788888754332 212235689999999999999999887533211 1123 356677777754
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=29.90 E-value=2.2e+02 Score=26.49 Aligned_cols=70 Identities=7% Similarity=0.073 Sum_probs=46.2
Q ss_pred CCcEEEEEcCchH---------HHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhh
Q 043450 4 PGSKIVVTTRNVS---------VARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLA 74 (561)
Q Consensus 4 ~GsrIivTTR~~~---------v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLa 74 (561)
.|.+||+||+... +.-.+.+..++++++++.++-.+++..++....-.. -+++..-+++++.|-.=+
T Consensus 129 ~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l----~~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 129 SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL----TDEVGHFILTRGTRSMSA 204 (234)
T ss_pred cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhcCCCHHH
Confidence 5778999987532 112233457899999999999999987765322111 145677788888876544
Q ss_pred HHH
Q 043450 75 AKV 77 (561)
Q Consensus 75 l~~ 77 (561)
+..
T Consensus 205 l~~ 207 (234)
T PRK05642 205 LFD 207 (234)
T ss_pred HHH
Confidence 433
No 108
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=28.86 E-value=1.1e+02 Score=30.79 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=43.5
Q ss_pred EEEEcCchHHHhhcCC-cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhh
Q 043450 8 IVVTTRNVSVARMMRS-TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNL 81 (561)
Q Consensus 8 IivTTR~~~v~~~~~~-~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~ 81 (561)
|++|++-..+...+.+ -..+++.+++.++..+.+...... . . --.+....+++.++|.|.....+...
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~----~-~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q----G-SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c----C-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4444444444433322 259999999999999999874311 1 1 11334678999999999866555543
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=27.78 E-value=2.1e+02 Score=26.42 Aligned_cols=68 Identities=10% Similarity=0.164 Sum_probs=40.5
Q ss_pred CCcEEEEEcCch---------HHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhh
Q 043450 4 PGSKIVVTTRNV---------SVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLA 74 (561)
Q Consensus 4 ~GsrIivTTR~~---------~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLa 74 (561)
.|-+||+|++.. ++...+.+..++++++++.++-.+++.+.|-..... --++++.-+++++.+-.=.
T Consensus 129 ~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~ 204 (219)
T PF00308_consen 129 SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRE 204 (219)
T ss_dssp TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHH
T ss_pred hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHH
Confidence 477899998553 333344556799999999999999999988532222 2234566677766654433
Q ss_pred H
Q 043450 75 A 75 (561)
Q Consensus 75 l 75 (561)
|
T Consensus 205 L 205 (219)
T PF00308_consen 205 L 205 (219)
T ss_dssp H
T ss_pred H
Confidence 3
No 110
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=27.76 E-value=1.8e+02 Score=29.31 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=45.7
Q ss_pred CCcEEEEEcCch-HHHhhcCC-cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhh
Q 043450 4 PGSKIVVTTRNV-SVARMMRS-TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGN 80 (561)
Q Consensus 4 ~GsrIivTTR~~-~v~~~~~~-~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~ 80 (561)
++..+|++|.+. .+...+.+ -..+.+.+++.++..+++..... . .. ..-...+++.++|.|.....+..
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~----~~-~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D----LP-DDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c----CC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 356677777765 44333332 35899999999999999977531 1 11 11126789999999986655543
No 111
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=24.60 E-value=2.6e+02 Score=27.37 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=45.6
Q ss_pred CCCcEEEEEcCchHH-HhhcCC-cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHh
Q 043450 3 LPGSKIVVTTRNVSV-ARMMRS-TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTG 79 (561)
Q Consensus 3 ~~GsrIivTTR~~~v-~~~~~~-~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g 79 (561)
.+++.+|++|.+.+. ...+.+ ..++++.++++++..+.+.... . .. -++.+.+++.+|+|.|..+....
T Consensus 121 p~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~---~~----~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 121 PKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-N---DI----KEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred CCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-c---CC----CHHHHHHHHHHcCCCHHHHHHHh
Confidence 467889988876543 222221 3589999999999988775543 1 11 12236788999999997665443
No 112
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=23.32 E-value=1.7e+02 Score=26.06 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=40.8
Q ss_pred CCcEEEEEcCch-HHHhhcCC-cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChh
Q 043450 4 PGSKIVVTTRNV-SVARMMRS-TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPL 73 (561)
Q Consensus 4 ~GsrIivTTR~~-~v~~~~~~-~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPL 73 (561)
+.+.+|++|++. .+...+.. ..++++.+++.++..+.+... + .+ ++.+..+++.++|.|.
T Consensus 125 ~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g----i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 125 PNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G----IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred CCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----CC----HHHHHHHHHHcCCCcc
Confidence 456677766653 33333221 359999999999998888775 1 11 3458899999999884
No 113
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=21.97 E-value=1.1e+02 Score=26.43 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCChhhHHHHhhhccccc
Q 043450 57 LEPIARQIARKCKGLPLAAKVTGNLLCDKR 86 (561)
Q Consensus 57 ~~~~~~~iv~~c~GlPLal~~~g~~L~~~~ 86 (561)
+.++|+.| |.|-|.+.+|++.++++
T Consensus 109 Y~~iA~~i-----G~PsaaRaVg~A~~~n~ 133 (178)
T KOG4062|consen 109 YGQIARRI-----GNPSAARAVGSAMAHNN 133 (178)
T ss_pred HHHHHHHh-----CCcHHHHHHHHHHccCC
Confidence 44444444 79999999999977665
No 114
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=20.45 E-value=2.6e+02 Score=27.46 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=38.0
Q ss_pred chHHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhH
Q 043450 14 NVSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAA 75 (561)
Q Consensus 14 ~~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal 75 (561)
+..+++.+..-..++|++++.+|+..++..++-.+--.. ...-+...++..--.+|.|--+
T Consensus 246 d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 246 DPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred cHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 333444333334899999999999999987763221111 1233445666777778988544
No 115
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.28 E-value=1.4e+02 Score=30.15 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=42.3
Q ss_pred CCcEEEEEcCc-hHHHhhcCC-cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhh
Q 043450 4 PGSKIVVTTRN-VSVARMMRS-TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLA 74 (561)
Q Consensus 4 ~GsrIivTTR~-~~v~~~~~~-~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLa 74 (561)
+..++|++|.+ ..+...+.+ ...+++++++.++..+.+...+-..+... -++.+..|++.++|.|-.
T Consensus 148 ~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 148 QHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred CCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 34566666654 344433321 35899999999999988877663222111 223467789999998743
Done!