Query 043450
Match_columns 561
No_of_seqs 297 out of 3655
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-28 9E-33 258.9 13.2 194 4-224 264-472 (549)
2 4fcg_A Uncharacterized protein 99.9 5.5E-23 1.9E-27 204.0 10.5 200 328-561 100-309 (328)
3 3rgz_A Protein brassinosteroid 99.8 1.7E-21 5.7E-26 215.7 12.5 207 326-561 436-712 (768)
4 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-22 1.2E-26 196.9 6.1 242 242-561 50-299 (313)
5 4fcg_A Uncharacterized protein 99.8 2.9E-21 9.9E-26 191.5 11.8 197 330-561 79-285 (328)
6 3sfz_A APAF-1, apoptotic pepti 99.8 2.4E-21 8.1E-26 226.6 12.2 188 3-223 255-452 (1249)
7 1ogq_A PGIP-2, polygalacturona 99.8 3.5E-21 1.2E-25 189.7 9.9 203 326-561 70-276 (313)
8 1vt4_I APAF-1 related killer D 99.8 2.8E-21 9.4E-26 208.7 8.4 167 4-217 264-437 (1221)
9 4eco_A Uncharacterized protein 99.8 5.6E-20 1.9E-24 198.9 14.3 275 241-560 248-543 (636)
10 3v47_A TOLL-like receptor 5B a 99.8 1.3E-20 4.3E-25 196.2 8.9 138 240-428 28-171 (455)
11 3o6n_A APL1; leucine-rich repe 99.8 6.4E-20 2.2E-24 186.8 12.9 239 241-561 44-326 (390)
12 4ecn_A Leucine-rich repeat pro 99.8 1.2E-19 4E-24 200.3 15.0 251 240-561 489-784 (876)
13 4eco_A Uncharacterized protein 99.8 1.5E-20 5.3E-25 203.3 7.7 217 324-561 198-465 (636)
14 2z80_A TOLL-like receptor 2, v 99.8 3.3E-20 1.1E-24 186.2 8.2 209 328-561 96-309 (353)
15 1xku_A Decorin; proteoglycan, 99.8 1.7E-19 5.7E-24 179.3 12.4 240 241-561 51-301 (330)
16 3rgz_A Protein brassinosteroid 99.8 5.1E-20 1.8E-24 203.8 9.5 271 241-561 268-546 (768)
17 3oja_B Anopheles plasmodium-re 99.8 1.5E-19 5.2E-24 194.3 12.5 207 324-561 67-332 (597)
18 2ft3_A Biglycan; proteoglycan, 99.8 4.8E-19 1.6E-23 176.1 14.9 195 327-560 97-301 (332)
19 2id5_A Lingo-1, leucine rich r 99.8 1.3E-19 4.4E-24 189.7 10.4 264 240-561 30-328 (477)
20 3zyi_A Leucine-rich repeat-con 99.8 3.9E-19 1.3E-23 184.6 13.4 199 328-561 95-298 (452)
21 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-19 5.5E-24 194.9 10.6 202 328-561 346-553 (606)
22 2z66_A Variable lymphocyte rec 99.8 1.9E-19 6.6E-24 176.9 9.1 231 240-543 26-261 (306)
23 3zyj_A Leucine-rich repeat-con 99.8 5.5E-19 1.9E-23 182.8 12.4 103 328-441 108-213 (440)
24 2id5_A Lingo-1, leucine rich r 99.8 2E-18 6.9E-23 180.6 16.2 195 246-503 15-211 (477)
25 4fmz_A Internalin; leucine ric 99.8 3.9E-18 1.3E-22 170.7 17.3 190 328-561 106-295 (347)
26 3o6n_A APL1; leucine-rich repe 99.8 7.4E-19 2.5E-23 178.9 11.8 208 323-561 60-303 (390)
27 1xku_A Decorin; proteoglycan, 99.8 1.8E-18 6.3E-23 171.8 14.3 245 241-561 75-327 (330)
28 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-18 5.5E-23 187.0 15.0 147 240-438 30-180 (606)
29 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-18 7.2E-23 192.8 16.3 151 240-441 22-180 (844)
30 4fmz_A Internalin; leucine ric 99.8 4.8E-18 1.6E-22 170.0 17.0 191 328-561 151-341 (347)
31 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-18 7.2E-23 182.5 15.1 134 242-432 21-161 (520)
32 3v47_A TOLL-like receptor 5B a 99.8 5.7E-19 1.9E-23 183.6 10.4 202 328-561 125-403 (455)
33 3t6q_A CD180 antigen; protein- 99.8 1.4E-18 4.9E-23 187.5 13.3 273 241-561 277-555 (606)
34 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.6E-23 191.1 12.1 249 240-560 23-303 (680)
35 1z6t_A APAF-1, apoptotic prote 99.8 8.1E-19 2.8E-23 188.6 10.9 184 3-220 255-449 (591)
36 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-18 7.8E-23 171.2 13.2 193 332-561 123-328 (332)
37 4ecn_A Leucine-rich repeat pro 99.8 5.5E-19 1.9E-23 194.9 8.8 247 241-561 447-761 (876)
38 2z66_A Variable lymphocyte rec 99.8 4.3E-19 1.5E-23 174.4 6.9 238 246-561 11-256 (306)
39 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-18 1.4E-22 180.3 14.7 82 241-377 44-128 (520)
40 1ozn_A Reticulon 4 receptor; N 99.8 4E-18 1.4E-22 165.6 13.3 199 331-561 31-233 (285)
41 3oja_B Anopheles plasmodium-re 99.8 4.7E-19 1.6E-23 190.5 6.8 195 326-561 117-353 (597)
42 3t6q_A CD180 antigen; protein- 99.7 4.1E-18 1.4E-22 183.9 12.2 269 243-561 255-531 (606)
43 2z81_A CD282 antigen, TOLL-lik 99.7 4.2E-18 1.4E-22 181.5 11.9 172 241-441 25-202 (549)
44 3zyj_A Leucine-rich repeat-con 99.7 6.3E-18 2.2E-22 174.8 12.0 236 246-561 47-287 (440)
45 1o6v_A Internalin A; bacterial 99.7 2.1E-17 7.1E-22 172.3 15.6 189 328-561 108-317 (466)
46 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.9E-22 164.1 12.8 188 329-561 38-225 (308)
47 1o6v_A Internalin A; bacterial 99.7 3.5E-17 1.2E-21 170.5 16.8 262 240-561 66-339 (466)
48 3zyi_A Leucine-rich repeat-con 99.7 1.3E-17 4.6E-22 173.0 13.4 226 240-542 73-302 (452)
49 3bz5_A Internalin-J, INLJ; leu 99.7 2.9E-17 9.9E-22 170.1 15.3 219 241-558 41-259 (457)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1E-17 3.4E-22 179.0 12.2 126 241-423 51-181 (562)
51 2z63_A TOLL-like receptor 4, v 99.7 9.3E-18 3.2E-22 179.7 11.3 146 240-437 26-175 (570)
52 1p9a_G Platelet glycoprotein I 99.7 3E-17 1E-21 159.6 13.9 197 328-561 6-203 (290)
53 3o53_A Protein LRIM1, AGAP0063 99.7 5.2E-18 1.8E-22 167.4 7.3 195 324-561 50-245 (317)
54 3oja_A Leucine-rich immune mol 99.7 2.5E-18 8.4E-23 179.7 5.2 189 328-558 76-267 (487)
55 3j0a_A TOLL-like receptor 5; m 99.7 2.7E-17 9.1E-22 183.9 13.8 158 247-460 9-171 (844)
56 1wwl_A Monocyte differentiatio 99.7 2.3E-18 7.7E-23 169.6 4.2 198 329-561 92-304 (312)
57 1ozn_A Reticulon 4 receptor; N 99.7 2E-17 6.8E-22 160.7 10.7 182 328-542 52-237 (285)
58 2z62_A TOLL-like receptor 4, v 99.7 3.9E-17 1.3E-21 157.8 12.2 197 332-561 28-232 (276)
59 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 153.6 15.3 87 351-441 26-115 (270)
60 3bz5_A Internalin-J, INLJ; leu 99.7 8.8E-17 3E-21 166.5 13.6 182 328-561 60-241 (457)
61 3oja_A Leucine-rich immune mol 99.7 4.4E-18 1.5E-22 177.8 3.5 194 325-561 51-245 (487)
62 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-16 5.1E-21 169.8 15.4 234 225-561 45-292 (622)
63 2z80_A TOLL-like receptor 2, v 99.7 1E-17 3.4E-22 168.1 5.8 258 242-545 52-316 (353)
64 3o53_A Protein LRIM1, AGAP0063 99.7 3.5E-18 1.2E-22 168.7 1.5 232 241-560 33-269 (317)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 8.8E-17 3E-21 171.7 12.3 152 384-561 350-505 (562)
66 1h6u_A Internalin H; cell adhe 99.7 9.1E-17 3.1E-21 157.7 10.6 178 328-549 59-236 (308)
67 1ziw_A TOLL-like receptor 3; i 99.7 7.9E-17 2.7E-21 176.2 11.1 239 247-561 9-280 (680)
68 2z62_A TOLL-like receptor 4, v 99.7 2.1E-16 7.3E-21 152.6 12.6 186 327-543 47-237 (276)
69 2z63_A TOLL-like receptor 4, v 99.7 4.8E-17 1.6E-21 174.1 8.7 178 361-561 344-526 (570)
70 2z81_A CD282 antigen, TOLL-lik 99.7 1.9E-16 6.5E-21 168.7 11.6 116 328-455 46-166 (549)
71 4glp_A Monocyte differentiatio 99.6 4.6E-16 1.6E-20 152.9 10.2 198 330-561 89-302 (310)
72 2ca6_A RAN GTPase-activating p 99.6 2.5E-17 8.5E-22 167.3 0.6 218 326-561 54-311 (386)
73 3rfs_A Internalin B, repeat mo 99.6 1.8E-16 6E-21 152.8 6.2 184 328-553 59-246 (272)
74 1p9a_G Platelet glycoprotein I 99.6 4.1E-16 1.4E-20 151.5 8.7 176 332-543 31-208 (290)
75 2xwt_C Thyrotropin receptor; s 99.6 2.8E-16 9.7E-21 148.3 7.0 192 332-561 31-234 (239)
76 1wwl_A Monocyte differentiatio 99.6 1E-16 3.6E-21 157.7 3.0 199 334-561 65-282 (312)
77 1h6t_A Internalin B; cell adhe 99.6 2.9E-15 1E-19 145.6 12.5 175 329-547 43-217 (291)
78 2o6q_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 142.7 13.5 179 332-543 37-218 (270)
79 3rfs_A Internalin B, repeat mo 99.6 3E-15 1E-19 144.1 12.1 181 328-543 37-218 (272)
80 3cvr_A Invasion plasmid antige 99.6 4.7E-15 1.6E-19 156.4 13.0 175 332-561 59-238 (571)
81 2ast_B S-phase kinase-associat 99.6 5.8E-16 2E-20 154.1 5.5 206 327-561 63-280 (336)
82 1h6t_A Internalin B; cell adhe 99.6 1.8E-15 6.1E-20 147.1 8.1 175 351-561 34-208 (291)
83 1jl5_A Outer protein YOPM; leu 99.6 7.4E-16 2.5E-20 159.4 5.4 253 241-561 10-265 (454)
84 3m19_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 138.4 11.7 177 332-544 14-193 (251)
85 1z7x_W Ribonuclease inhibitor; 99.6 4.2E-16 1.4E-20 162.2 2.0 34 242-275 3-38 (461)
86 2ast_B S-phase kinase-associat 99.6 1.1E-15 3.7E-20 152.1 4.8 232 243-550 71-314 (336)
87 2xwt_C Thyrotropin receptor; s 99.6 2.4E-15 8.1E-20 141.9 6.4 184 352-561 22-213 (239)
88 1jl5_A Outer protein YOPM; leu 99.6 1.5E-14 5.1E-19 149.6 12.6 251 242-561 131-404 (454)
89 1z7x_W Ribonuclease inhibitor; 99.6 1E-15 3.5E-20 159.3 3.7 283 243-561 86-406 (461)
90 3goz_A Leucine-rich repeat-con 99.5 1.8E-15 6E-20 152.2 4.9 58 364-422 109-178 (362)
91 1m9s_A Internalin B; cell inva 99.5 4.6E-15 1.6E-19 158.2 8.2 175 329-547 40-214 (605)
92 2ca6_A RAN GTPase-activating p 99.5 7.5E-16 2.6E-20 156.4 1.9 216 324-561 24-282 (386)
93 1m9s_A Internalin B; cell inva 99.5 7.2E-15 2.5E-19 156.7 9.0 149 328-504 61-209 (605)
94 3m19_A Variable lymphocyte rec 99.5 1.8E-14 6.3E-19 136.8 10.8 173 364-561 14-187 (251)
95 3g06_A SSPH2 (leucine-rich rep 99.5 2.3E-14 7.8E-19 153.0 11.6 224 223-550 64-305 (622)
96 4glp_A Monocyte differentiatio 99.5 5.1E-15 1.7E-19 145.5 4.2 181 329-544 114-308 (310)
97 4ezg_A Putative uncharacterize 99.5 4.6E-14 1.6E-18 128.7 10.3 107 329-448 41-147 (197)
98 1xeu_A Internalin C; cellular 99.5 2.2E-14 7.6E-19 137.1 7.1 148 328-504 37-184 (263)
99 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.6E-19 157.8 6.9 123 323-458 215-337 (727)
100 4g8a_A TOLL-like receptor 4; l 99.5 1.1E-13 3.7E-18 149.9 11.8 147 240-439 50-201 (635)
101 4ezg_A Putative uncharacterize 99.5 1.8E-13 6.1E-18 124.8 10.6 148 242-449 44-193 (197)
102 2o6s_A Variable lymphocyte rec 99.4 1.2E-13 4.3E-18 127.0 8.3 169 351-553 17-189 (208)
103 3goz_A Leucine-rich repeat-con 99.4 2.7E-14 9.3E-19 143.5 4.0 214 326-561 44-292 (362)
104 1dce_A Protein (RAB geranylger 99.4 2.3E-15 7.9E-20 159.5 -4.6 187 323-560 363-567 (567)
105 3cvr_A Invasion plasmid antige 99.4 1E-13 3.4E-18 146.2 7.6 134 243-450 60-193 (571)
106 4g8a_A TOLL-like receptor 4; l 99.4 1.8E-13 6.2E-18 148.1 9.1 126 333-473 53-182 (635)
107 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.9E-17 125.2 13.2 173 330-547 17-189 (263)
108 2xot_A Amphoterin-induced prot 99.4 7.3E-13 2.5E-17 132.9 10.6 152 335-505 21-176 (361)
109 4ay9_X Follicle-stimulating ho 99.4 2.6E-13 8.8E-18 135.6 6.4 38 520-559 191-229 (350)
110 3ogk_B Coronatine-insensitive 99.4 3E-13 1E-17 145.3 7.2 206 322-560 154-385 (592)
111 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 122.3 10.3 111 326-449 58-171 (229)
112 4ay9_X Follicle-stimulating ho 99.4 4.7E-13 1.6E-17 133.7 8.0 196 328-560 50-253 (350)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4E-17 121.5 10.1 111 328-449 53-165 (220)
114 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.9E-17 121.6 9.7 110 327-449 51-164 (220)
115 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 120.4 8.3 109 328-449 48-160 (208)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 2.8E-12 9.5E-17 119.0 10.1 149 335-504 14-165 (220)
117 2v9t_B SLIT homolog 2 protein 99.3 3.3E-12 1.1E-16 118.5 10.2 148 335-504 14-164 (220)
118 3e6j_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 117.8 11.6 93 351-449 29-124 (229)
119 3ogk_B Coronatine-insensitive 99.3 2.4E-12 8.3E-17 138.2 10.4 205 324-560 184-410 (592)
120 2je0_A Acidic leucine-rich nuc 99.3 1.3E-12 4.3E-17 113.3 6.6 109 329-450 14-126 (149)
121 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.4E-17 114.7 7.5 107 330-449 22-132 (168)
122 2ell_A Acidic leucine-rich nuc 99.3 2.6E-12 8.7E-17 113.8 8.0 102 328-441 45-153 (168)
123 1dce_A Protein (RAB geranylger 99.3 5E-12 1.7E-16 133.9 10.9 72 366-441 443-514 (567)
124 2je0_A Acidic leucine-rich nuc 99.3 1.7E-12 5.9E-17 112.4 5.1 103 327-441 37-146 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.3 3.7E-12 1.3E-16 113.7 6.1 97 333-441 43-146 (176)
126 2xot_A Amphoterin-induced prot 99.3 7.3E-12 2.5E-16 125.6 8.7 157 332-504 39-201 (361)
127 4b8c_D Glucose-repressible alc 99.3 1E-12 3.5E-17 143.6 2.6 116 328-455 243-359 (727)
128 1a9n_A U2A', U2A'; complex (nu 99.3 6.3E-12 2.1E-16 112.2 6.9 107 328-449 15-125 (176)
129 2p1m_B Transport inhibitor res 99.2 1.5E-11 5.3E-16 131.9 8.2 92 322-422 201-300 (594)
130 1w8a_A SLIT protein; signaling 99.2 3.3E-11 1.1E-15 109.1 8.9 102 335-449 11-114 (192)
131 2wfh_A SLIT homolog 2 protein 99.2 6.2E-11 2.1E-15 107.3 10.3 101 335-449 13-114 (193)
132 2p1m_B Transport inhibitor res 99.2 3.2E-12 1.1E-16 137.3 2.0 61 462-539 287-347 (594)
133 1w8a_A SLIT protein; signaling 99.2 8E-11 2.8E-15 106.6 9.3 106 333-450 30-139 (192)
134 2wfh_A SLIT homolog 2 protein 99.1 1.5E-10 5.1E-15 104.8 10.0 105 332-449 31-138 (193)
135 2r9u_A Variable lymphocyte rec 99.1 2.9E-10 9.9E-15 101.0 10.0 100 335-449 15-117 (174)
136 1ds9_A Outer arm dynein; leuci 99.1 1E-12 3.4E-17 119.9 -6.6 102 327-441 43-146 (198)
137 1ds9_A Outer arm dynein; leuci 99.1 1.5E-12 5.3E-17 118.7 -6.2 133 253-441 36-180 (198)
138 3g39_A Variable lymphocyte rec 99.0 6.4E-10 2.2E-14 98.4 10.1 101 334-449 11-114 (170)
139 2o6r_A Variable lymphocyte rec 99.0 2.3E-09 7.9E-14 95.5 10.5 105 332-449 28-136 (177)
140 2o6r_A Variable lymphocyte rec 99.0 2.5E-09 8.6E-14 95.2 10.4 101 334-449 9-112 (177)
141 2r9u_A Variable lymphocyte rec 98.9 1.9E-09 6.6E-14 95.6 7.8 92 332-434 33-127 (174)
142 3g39_A Variable lymphocyte rec 98.8 8.4E-09 2.9E-13 91.1 8.1 81 332-422 30-113 (170)
143 2ifg_A High affinity nerve gro 98.8 1.7E-08 5.8E-13 100.4 9.1 93 352-449 20-115 (347)
144 3sb4_A Hypothetical leucine ri 98.7 1.1E-08 3.9E-13 100.8 7.0 170 363-560 100-328 (329)
145 3sb4_A Hypothetical leucine ri 98.5 3.8E-08 1.3E-12 97.0 3.5 153 386-560 100-304 (329)
146 2ifg_A High affinity nerve gro 98.5 1.6E-07 5.6E-12 93.2 7.2 90 324-423 24-115 (347)
147 2ra8_A Uncharacterized protein 98.4 3.3E-08 1.1E-12 98.2 1.2 44 490-543 277-320 (362)
148 3un9_A NLR family member X1; l 98.4 1.3E-08 4.4E-13 101.9 -2.3 162 331-504 71-251 (372)
149 3un9_A NLR family member X1; l 98.4 1.3E-08 4.6E-13 101.8 -2.4 131 332-474 101-249 (372)
150 4fdw_A Leucine rich hypothetic 98.4 9.5E-07 3.3E-11 89.2 9.5 194 326-560 174-377 (401)
151 2ra8_A Uncharacterized protein 98.3 4.5E-07 1.5E-11 90.0 5.8 193 330-561 105-315 (362)
152 4fdw_A Leucine rich hypothetic 98.2 5.3E-06 1.8E-10 83.7 11.0 191 333-561 158-353 (401)
153 3rw6_A Nuclear RNA export fact 97.9 4.8E-06 1.6E-10 78.3 2.6 79 361-441 167-257 (267)
154 3rw6_A Nuclear RNA export fact 97.8 3.1E-05 1.1E-09 72.8 6.4 82 326-417 164-257 (267)
155 1io0_A Tropomodulin; LRR prote 97.7 2.3E-05 7.8E-10 69.8 4.4 112 321-441 25-157 (185)
156 1io0_A Tropomodulin; LRR prote 97.6 5.9E-05 2E-09 67.1 6.0 89 324-422 57-162 (185)
157 3e4g_A ATP synthase subunit S, 97.5 4.2E-05 1.5E-09 66.6 3.6 85 333-426 62-154 (176)
158 3e4g_A ATP synthase subunit S, 97.4 6.9E-05 2.4E-09 65.3 2.5 60 364-423 61-126 (176)
159 4fs7_A Uncharacterized protein 96.5 0.0022 7.5E-08 64.4 5.3 143 383-558 249-393 (394)
160 4fs7_A Uncharacterized protein 96.2 0.0041 1.4E-07 62.4 5.1 74 362-441 251-326 (394)
161 4gt6_A Cell surface protein; l 95.9 0.04 1.4E-06 55.1 11.1 31 244-275 66-97 (394)
162 2fna_A Conserved hypothetical 95.7 0.068 2.3E-06 52.2 11.4 169 4-215 169-355 (357)
163 3rfe_A Platelet glycoprotein I 95.5 0.02 7E-07 47.1 5.8 34 365-398 32-66 (130)
164 3rfe_A Platelet glycoprotein I 95.4 0.021 7.3E-07 47.0 5.6 53 367-422 11-66 (130)
165 1w5s_A Origin recognition comp 94.9 0.1 3.6E-06 52.2 10.3 169 5-195 179-372 (412)
166 4gt6_A Cell surface protein; l 94.7 0.046 1.6E-06 54.6 6.7 17 525-541 352-368 (394)
167 2qen_A Walker-type ATPase; unk 94.0 0.095 3.2E-06 51.0 7.4 171 4-215 163-347 (350)
168 4h09_A Hypothetical leucine ri 90.8 0.34 1.2E-05 47.8 6.5 100 328-441 236-339 (379)
169 1pgv_A TMD-1, tropomodulin TMD 90.5 0.29 1E-05 43.1 5.0 92 321-421 30-136 (197)
170 1njg_A DNA polymerase III subu 90.2 0.38 1.3E-05 43.6 5.9 75 3-81 154-230 (250)
171 4h09_A Hypothetical leucine ri 90.0 0.86 2.9E-05 44.8 8.6 100 328-441 213-316 (379)
172 1pgv_A TMD-1, tropomodulin TMD 84.6 1.4 4.9E-05 38.7 5.7 90 324-422 62-168 (197)
173 1fnn_A CDC6P, cell division co 83.4 8.5 0.00029 37.5 11.7 196 4-222 158-386 (389)
174 1hqc_A RUVB; extended AAA-ATPa 82.2 1.1 3.8E-05 42.9 4.5 73 5-81 138-213 (324)
175 2v1u_A Cell division control p 78.9 8.2 0.00028 37.5 9.7 165 4-195 166-352 (387)
176 2qby_B CDC6 homolog 3, cell di 75.4 42 0.0014 32.3 13.8 166 4-196 163-341 (384)
177 2chg_A Replication factor C sm 73.8 4.2 0.00014 35.8 5.4 75 3-81 130-206 (226)
178 1sxj_B Activator 1 37 kDa subu 63.9 8.6 0.00029 36.3 5.6 74 4-81 136-212 (323)
179 2qby_A CDC6 homolog 1, cell di 49.5 21 0.00072 34.4 5.8 167 5-194 163-348 (386)
180 3bos_A Putative DNA replicatio 49.2 23 0.00078 31.4 5.6 68 7-78 140-216 (242)
181 1iqp_A RFCS; clamp loader, ext 43.1 36 0.0012 31.8 6.2 74 3-80 138-213 (327)
182 2z4s_A Chromosomal replication 42.0 39 0.0013 33.7 6.4 68 4-75 226-302 (440)
183 1jr3_A DNA polymerase III subu 28.1 78 0.0027 30.2 5.9 72 4-79 148-221 (373)
184 2vda_B Maltoporin; sugar trans 27.0 33 0.0011 18.3 1.5 16 69-84 9-24 (28)
185 2chq_A Replication factor C sm 22.9 1.4E+02 0.0047 27.6 6.4 71 4-78 131-203 (319)
186 1sxj_E Activator 1 40 kDa subu 21.1 1E+02 0.0036 29.1 5.2 72 4-78 163-236 (354)
187 1l8q_A Chromosomal replication 20.8 53 0.0018 30.9 3.0 63 4-72 130-201 (324)
188 1sxj_A Activator 1 95 kDa subu 20.8 1.2E+02 0.004 30.8 5.7 72 6-81 180-255 (516)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=2.6e-28 Score=258.88 Aligned_cols=194 Identities=19% Similarity=0.267 Sum_probs=153.0
Q ss_pred CCcEEEEEcCchHHHhhcC-CcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhhc
Q 043450 4 PGSKIVVTTRNVSVARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNLL 82 (561)
Q Consensus 4 ~GsrIivTTR~~~v~~~~~-~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~L 82 (561)
+||+||||||++.|+..++ ...+|+|++|+.+|||+||+++||.... ++.+++++++|+++|+|+||||+++|+.|
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l 340 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSC 340 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHh
Confidence 7999999999999998876 4468999999999999999999985432 36788899999999999999999999996
Q ss_pred cccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhh-----------hhcccCCCccc
Q 043450 83 CDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFS-----------YCAVFPKDYNM 151 (561)
Q Consensus 83 ~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl-----------~~a~fp~~~~i 151 (561)
+.+. + +|...+....+.. ....+..++.+||++||+ .+|.||+ |||+||+++.+
T Consensus 341 ~~~~----------w-~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i 405 (549)
T 2a5y_B 341 EPKT----------F-EKMAQLNNKLESR--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDI 405 (549)
T ss_dssp CSSS----------H-HHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCE
T ss_pred ccch----------H-HHHHHhHHHhhcc--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCee
Confidence 5431 1 2222233222221 346788999999999999 8999999 99999999988
Q ss_pred CHHHHHHHHHHc--CCCCCCc-chhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHHHhhccce
Q 043450 152 NKRELINLWMAQ--GYLNADE-DEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQFVSRKEC 224 (561)
Q Consensus 152 ~~~~Li~~w~a~--g~~~~~~-~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~~i~~~e~ 224 (561)
+ ++.|+|+ ||+.... ...++++++ ++++|++++|++....+ ... +|+|||++|++|++++.+++
T Consensus 406 ~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~-~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 406 P----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVL-TFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp E----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSC-EEECCHHHHHHHHTTSCTHH
T ss_pred e----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---Cce-EEEeChHHHHHHHHHHHHHH
Confidence 8 8999999 9998765 445677777 99999999999986543 222 39999999999999987764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=5.5e-23 Score=203.96 Aligned_cols=200 Identities=22% Similarity=0.277 Sum_probs=172.4
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+.++.+|++|++++ |.+..+|..++.+++|++|++++|.++.+|..++++++|++|++++|..++.+|..+
T Consensus 100 l~~l~~L~~L~L~~---------n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 100 AFRLSHLQHMTIDA---------AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GGGGTTCSEEEEES---------SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred hhhCCCCCEEECCC---------CCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 56799999999999 778899999999999999999999999999999999999999999998899999887
Q ss_pred cc---------CCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCC
Q 043450 408 GK---------LKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVS 478 (561)
Q Consensus 408 ~~---------l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~ 478 (561)
+. +++|++|++++|. +..+|..++++++|++|+ +.+|.+.+ ....+..+++|+.|++.++..
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~--L~~N~l~~----l~~~l~~l~~L~~L~Ls~n~~-- 241 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLK--IRNSPLSA----LGPAIHHLPKLEELDLRGCTA-- 241 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEE--EESSCCCC----CCGGGGGCTTCCEEECTTCTT--
T ss_pred hhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEE--ccCCCCCc----CchhhccCCCCCEEECcCCcc--
Confidence 65 9999999999998 669999999999999998 77777643 333577788888888876443
Q ss_pred CcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecC-CCCCChhhhcccCCcE
Q 043450 479 HVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYG-GNIFPKWLTLLTNLRD 557 (561)
Q Consensus 479 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~ 557 (561)
....+..+.++++|+.|++++|.+ ...+|..+..+++|+.|++++|. ...+|.++.++++|+.
T Consensus 242 --~~~~p~~~~~l~~L~~L~L~~n~~--------------~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 242 --LRNYPPIFGGRAPLKRLILKDCSN--------------LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp --CCBCCCCTTCCCCCCEEECTTCTT--------------CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred --hhhhHHHhcCCCCCCEEECCCCCc--------------hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 334566788999999999998764 34567778899999999999988 5579999999999999
Q ss_pred EEcC
Q 043450 558 LNLD 561 (561)
Q Consensus 558 L~L~ 561 (561)
++++
T Consensus 306 l~l~ 309 (328)
T 4fcg_A 306 ILVP 309 (328)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9874
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.7e-21 Score=215.72 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=140.5
Q ss_pred HHHhccccccEEeccCCCCCCCCCccccc-ccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCcc
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIR-EIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
..+..+++|++|++++ |.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|+....+
T Consensus 436 ~~l~~l~~L~~L~L~~---------n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWL---------NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp GGGGGCTTCCEEECCS---------SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred HHHhcCCCCCEEECCC---------CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 3456677777777777 3443 56667777777777777777766 56777777777777777777755567
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchh------------------------
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLES------------------------ 459 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~------------------------ 459 (561)
|..++.+++|++|++++|...+.+|..++++++|+.|+ +.+|.+.+..|..+..
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~--Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD--LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE--CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE--CCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 77777777777777777776667777777777777776 5555554443333222
Q ss_pred -------------------------------------------hhccCCCCceEEcCCCCCCCcchhhhccccccccccc
Q 043450 460 -------------------------------------------LKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLR 496 (561)
Q Consensus 460 -------------------------------------------l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~ 496 (561)
+..++.|+.+++++ +...+..+..+.++++|+.
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~----N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY----NMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS----SCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC----CcccccCCHHHhccccCCE
Confidence 12233344444443 2333445556677777777
Q ss_pred EEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhcccCCcEEEcC
Q 043450 497 LGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 497 L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~ 561 (561)
|+|++|.+ .+.+|+.+..+++|+.|++++|.++ .+|..+.++++|+.|+|+
T Consensus 661 L~Ls~N~l--------------~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 661 LNLGHNDI--------------SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp EECCSSCC--------------CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred EeCcCCcc--------------CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 77776653 4457888888899999999999876 788888899999999885
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.6e-22 Score=196.87 Aligned_cols=242 Identities=17% Similarity=0.166 Sum_probs=191.5
Q ss_pred CceEEEEeeecCCC---CCcccccccCceeEEEEcc-CCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCC
Q 043450 242 EKVRHIGLNFQRGA---SFPMSFFEFDRLRSLLIYD-TSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNP 317 (561)
Q Consensus 242 ~~~~~l~l~~~~~~---~~~~~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (561)
..++.+.+..+... .+|..+..+++|++|.+.+ +..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l---------------------------------------- 89 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL---------------------------------------- 89 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE----------------------------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc----------------------------------------
Confidence 57899999998876 5788899999999999985 411
Q ss_pred CcchhHHHHHHhccccccEEeccCCCCCCCCCccccc-ccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecC
Q 043450 318 SLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIR-EIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIR 395 (561)
Q Consensus 318 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 395 (561)
....+..+.++++|++|++++ +.+. .+|..++.+++|++|++++|.++ .+|..++.+++|++|+++
T Consensus 90 ---~~~~p~~l~~l~~L~~L~Ls~---------n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 90 ---VGPIPPAIAKLTQLHYLYITH---------TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp ---ESCCCGGGGGCTTCSEEEEEE---------ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred ---cccCChhHhcCCCCCEEECcC---------CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 112334478899999999999 6676 78888999999999999999988 789999999999999999
Q ss_pred CCCCcCccCcccccCC-CCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCC
Q 043450 396 RCQDLRELPTGIGKLK-NMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGL 474 (561)
Q Consensus 396 ~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~ 474 (561)
+|.....+|..++.++ +|++|++++|...+.+|..++.++ |++|+ +.+|.+.+..+.. +..++.|+.|.+.+.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~--Ls~N~l~~~~~~~---~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD--LSRNMLEGDASVL---FGSDKNTQKIHLAKN 231 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE--CCSSEEEECCGGG---CCTTSCCSEEECCSS
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE--CcCCcccCcCCHH---HhcCCCCCEEECCCC
Confidence 9995558999999998 999999999997678999999887 99998 6677765444433 445566666666553
Q ss_pred CCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhccc
Q 043450 475 SNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLLT 553 (561)
Q Consensus 475 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~ 553 (561)
. ..... ..+..+++|+.|++++|.+ .+.+|..+..+++|+.|++++|.+. .+|.. .+++
T Consensus 232 ~----l~~~~-~~~~~l~~L~~L~Ls~N~l--------------~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~ 291 (313)
T 1ogq_A 232 S----LAFDL-GKVGLSKNLNGLDLRNNRI--------------YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291 (313)
T ss_dssp E----ECCBG-GGCCCCTTCCEEECCSSCC--------------EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred c----eeeec-CcccccCCCCEEECcCCcc--------------cCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence 2 11222 2367789999999998874 3346778888999999999999976 67765 7888
Q ss_pred CCcEEEcC
Q 043450 554 NLRDLNLD 561 (561)
Q Consensus 554 ~L~~L~L~ 561 (561)
+|+.|+++
T Consensus 292 ~L~~l~l~ 299 (313)
T 1ogq_A 292 RFDVSAYA 299 (313)
T ss_dssp GSCGGGTC
T ss_pred ccChHHhc
Confidence 88888764
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.9e-21 Score=191.53 Aligned_cols=197 Identities=22% Similarity=0.271 Sum_probs=168.7
Q ss_pred ccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccccc
Q 043450 330 KLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGK 409 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~ 409 (561)
....+++|++++ +.++.+|..++.+++|++|++++|.++.+|..++++++|++|++++|. +..+|..+++
T Consensus 79 ~~~~l~~L~L~~---------n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALELRS---------VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIAS 148 (328)
T ss_dssp TSTTCCEEEEES---------SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGG
T ss_pred cccceeEEEccC---------CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhc
Confidence 458899999999 788999999999999999999999999999999999999999999998 7799999999
Q ss_pred CCCCCeEEcCCCCCCccCcccccC---------CcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCc
Q 043450 410 LKNMRSLLNGDTSSLKYLPIGISR---------LTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHV 480 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~~i~~---------l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~ 480 (561)
+++|++|++++|...+.+|..++. +++|++|+ +.+|.+. .. ...+..+++|+.|.+.+..- .
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~--L~~n~l~-~l---p~~l~~l~~L~~L~L~~N~l-~-- 219 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR--LEWTGIR-SL---PASIANLQNLKSLKIRNSPL-S-- 219 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE--EEEECCC-CC---CGGGGGCTTCCEEEEESSCC-C--
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE--CcCCCcC-cc---hHhhcCCCCCCEEEccCCCC-C--
Confidence 999999999999889999988765 99999998 6666653 22 34567788888888887542 2
Q ss_pred chhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecC-CCCCChhhhcccCCcEEE
Q 043450 481 DEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYG-GNIFPKWLTLLTNLRDLN 559 (561)
Q Consensus 481 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~ 559 (561)
..+..+..+++|+.|++++|.+ ...+|..+..+++|+.|++++|. ...+|.++.++++|+.|+
T Consensus 220 --~l~~~l~~l~~L~~L~Ls~n~~--------------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 220 --ALGPAIHHLPKLEELDLRGCTA--------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp --CCCGGGGGCTTCCEEECTTCTT--------------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred --cCchhhccCCCCCEEECcCCcc--------------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 2344688999999999998764 33467788999999999999987 557899999999999999
Q ss_pred cC
Q 043450 560 LD 561 (561)
Q Consensus 560 L~ 561 (561)
|+
T Consensus 284 L~ 285 (328)
T 4fcg_A 284 LR 285 (328)
T ss_dssp CT
T ss_pred CC
Confidence 85
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.84 E-value=2.4e-21 Score=226.60 Aligned_cols=188 Identities=22% Similarity=0.321 Sum_probs=149.6
Q ss_pred CCCcEEEEEcCchHHHhh-cCCcceEeCCC-CChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhh
Q 043450 3 LPGSKIVVTTRNVSVARM-MRSTNIISIKP-LPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGN 80 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~~~-~~~~~~~~v~~-L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~ 80 (561)
++|||||||||++.++.. ++...++++++ |+++||++||+..++.. .+++++++++|+++|+|+||||+++|+
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~ 329 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGA 329 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHH
Confidence 689999999999999854 45568999996 99999999999998532 234556799999999999999999999
Q ss_pred hccccccccccCCcchhHHHHHHHhhhhhhh--------hhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcccC
Q 043450 81 LLCDKRTGNLLSSKSIVNEWQRILDSEVWKV--------EEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNMN 152 (561)
Q Consensus 81 ~L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~--------~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i~ 152 (561)
+|+.++ ..|+..+....... ......+..++.+||+.|++ ..|.||+|||+||+++.|+
T Consensus 330 ~l~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~ 396 (1249)
T 3sfz_A 330 LLRDFP-----------NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVP 396 (1249)
T ss_dssp HHHHSS-----------SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEE
T ss_pred HhhcCh-----------hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeC
Confidence 987764 12444443321111 11124578889999999999 7899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHHHhhccc
Q 043450 153 KRELINLWMAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQFVSRKE 223 (561)
Q Consensus 153 ~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~~i~~~e 223 (561)
+..++..|.++ ++.++.++++|++++|++.... +.... |+||++++++++....++
T Consensus 397 ~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~---~~~~~-~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 397 TKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRN---GKSFC-YYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEES---SSSEE-EECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecC---CCceE-EEecHHHHHHHHhhhhHH
Confidence 99999999554 3567889999999999986542 22333 999999999999987765
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.5e-21 Score=189.72 Aligned_cols=203 Identities=20% Similarity=0.253 Sum_probs=168.7
Q ss_pred HHHhccccccEEeccC-CCCCCCCCcccccccCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCcc
Q 043450 326 ELFSKLACLRALVISQ-PSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
..+.++++|++|++++ + +....+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.....+
T Consensus 70 ~~l~~l~~L~~L~L~~~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGIN--------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp GGGGGCTTCSEEEEEEET--------TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred hhHhCCCCCCeeeCCCCC--------cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC
Confidence 4578899999999994 2 445578999999999999999999998 88999999999999999999955589
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCc-CCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcch
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLT-SLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDE 482 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~ 482 (561)
|..++.+++|++|++++|...+.+|..+++++ +|++|+ +.+|.+.+..+..+.. ++ |+.|++.+. ....
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~--L~~N~l~~~~~~~~~~---l~-L~~L~Ls~N----~l~~ 211 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--ISRNRLTGKIPPTFAN---LN-LAFVDLSRN----MLEG 211 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE--CCSSEEEEECCGGGGG---CC-CSEEECCSS----EEEE
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE--CcCCeeeccCChHHhC---Cc-ccEEECcCC----cccC
Confidence 99999999999999999996669999999998 999998 6777765444544444 44 777777652 3344
Q ss_pred hhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhcccCCcEEEcC
Q 043450 483 AERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 483 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~ 561 (561)
..+..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+. .+|.++..+++|+.|+|+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAF---------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECC---------------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred cCCHHHhcCCCCCEEECCCCceee---------------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 566778899999999999887532 2334778899999999999987 799999999999999985
No 8
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.83 E-value=2.8e-21 Score=208.72 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=133.1
Q ss_pred CCcEEEEEcCchHHHhhcCCcceEeCC------CCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHH
Q 043450 4 PGSKIVVTTRNVSVARMMRSTNIISIK------PLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKV 77 (561)
Q Consensus 4 ~GsrIivTTR~~~v~~~~~~~~~~~v~------~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~ 77 (561)
+|||||||||++.++..+....+|+|+ +|+.+||++||++.. +.. ..+++.+| |+|+||||++
T Consensus 264 pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkL 332 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSI 332 (1221)
T ss_dssp SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHH
T ss_pred CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHH
Confidence 799999999999998765545577787 999999999999984 221 12234444 9999999999
Q ss_pred HhhhccccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhh-hhhhhhhcccCCCcccCHHHH
Q 043450 78 TGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMV-KRCFSYCAVFPKDYNMNKREL 156 (561)
Q Consensus 78 ~g~~L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~-k~cfl~~a~fp~~~~i~~~~L 156 (561)
+|+.|+++.. ....|+.. ....+..+++.||+.|++ .. |+||+|||+||+++.|+++.+
T Consensus 333 aGs~Lr~k~~--------s~eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elL 392 (1221)
T 1vt4_I 333 IAESIRDGLA--------TWDNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILL 392 (1221)
T ss_dssp HHHHHHHSCS--------SHHHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHH
T ss_pred HHHHHhCCCC--------CHHHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHH
Confidence 9999877631 35678653 134577889999999999 77 999999999999999999999
Q ss_pred HHHHHHcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHH
Q 043450 157 INLWMAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQ 217 (561)
Q Consensus 157 i~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~ 217 (561)
+.+|+++| ++.++.++++|++++|++.... .. +|+|||++++++.
T Consensus 393 a~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~-----~~-rYrMHDLllELr~ 437 (1221)
T 1vt4_I 393 SLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPK-----ES-TISIPSIYLELKV 437 (1221)
T ss_dssp HHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSS-----SS-EEBCCCHHHHHHH
T ss_pred HHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCC-----CC-EEEehHHHHHHhc
Confidence 99998887 1247789999999999987311 11 3999999998653
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=5.6e-20 Score=198.88 Aligned_cols=275 Identities=12% Similarity=0.116 Sum_probs=153.1
Q ss_pred CCceEEEEeeecC-CCCCcccccccCceeEEEEccCC-CCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 241 GEKVRHIGLNFQR-GASFPMSFFEFDRLRSLLIYDTS-HYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 241 ~~~~~~l~l~~~~-~~~~~~~~~~~~~Lr~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
...++.+.+..+. .+.+|..+.++++|++|.+.++. ... ..++..+..+...........+.+.. ..
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~------~~lp~~~~~L~~~~~l~~L~~L~L~~-----n~ 316 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG------EQLKDDWQALADAPVGEKIQIIYIGY-----NN 316 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH------HHHHHHHHHHHHSGGGGTCCEEECCS-----SC
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc------ccchHHHHhhhccccCCCCCEEECCC-----Cc
Confidence 5678999999887 46788889999999999999883 200 01111111110000000111111111 11
Q ss_pred cchhHHHH--HHhccccccEEeccCCCCCCCCCccccc-ccCccccccCccCEEecCCCCCccccccccCCCC-ccEEec
Q 043450 319 LNSSILRE--LFSKLACLRALVISQPSPIFRPDLNLIR-EIPENVEKLIHLKYLNLSGLRIESLPETLCELYN-LQKLDI 394 (561)
Q Consensus 319 ~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~l 394 (561)
+. .+|. .+..+++|++|++++ |.+. .+| .++.+++|++|++++|.++.+|..++++++ |++|++
T Consensus 317 l~--~ip~~~~l~~l~~L~~L~L~~---------N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 317 LK--TFPVETSLQKMKKLGMLECLY---------NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384 (636)
T ss_dssp CS--SCCCHHHHTTCTTCCEEECCS---------CCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEEC
T ss_pred CC--ccCchhhhccCCCCCEEeCcC---------CcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEc
Confidence 11 1222 566777777777777 5555 666 677777777777777777777777777777 777777
Q ss_pred CCCCCcCccCcccccCC--CCCeEEcCCCCCCccCccccc-------CCcCCcccCceeecCccCCCCccCchhhhccCC
Q 043450 395 RRCQDLRELPTGIGKLK--NMRSLLNGDTSSLKYLPIGIS-------RLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQL 465 (561)
Q Consensus 395 ~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~~i~-------~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~ 465 (561)
++|. +..+|..++.+. +|+.|++++|...+..|..++ .+++|++|+ +.+|.+.. .+ ..-+..++.
T Consensus 385 s~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~--Ls~N~l~~-lp--~~~~~~l~~ 458 (636)
T 4eco_A 385 AHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN--LSNNQISK-FP--KELFSTGSP 458 (636)
T ss_dssp CSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE--CCSSCCCS-CC--THHHHTTCC
T ss_pred cCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE--CcCCccCc-CC--HHHHccCCC
Confidence 7776 557777666544 677777777776666666666 666777776 55555531 11 111234566
Q ss_pred CCceEEcCCCCCCCcchhhh----cccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCC--CCCCCceEEEee
Q 043450 466 LRECRVEGLSNVSHVDEAER----LQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQ--PPVNVEELWIVY 539 (561)
Q Consensus 466 L~~l~i~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~--~~~~L~~L~l~~ 539 (561)
|+.|.+.+..- ........ ..+.++++|+.|++++|.+.. +|..+. .+++|+.|++++
T Consensus 459 L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 459 LSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK---------------LSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCCB---------------CCGGGSTTTCTTCCEEECCS
T ss_pred CCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCCc---------------cChhhhhccCCCcCEEECCC
Confidence 66666654321 11111000 011223378888887776542 333333 445555555555
Q ss_pred cCCCCCChhhhcccCCcEEEc
Q 043450 540 YGGNIFPKWLTLLTNLRDLNL 560 (561)
Q Consensus 540 ~~~~~lp~~~~~l~~L~~L~L 560 (561)
|.+..+|.++.++++|+.|+|
T Consensus 523 N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 523 NSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SCCSSCCCGGGGCSSCCEEEC
T ss_pred CCCCCcChhhhcCCCCCEEEC
Confidence 554445544444555555544
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.3e-20 Score=196.17 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=83.5
Q ss_pred cCCceEEEEeeecCCCCC-cccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASF-PMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+..++.+.+..+.+..+ +..+..+++|++|.+.++...
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---------------------------------------- 67 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---------------------------------------- 67 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT----------------------------------------
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc----------------------------------------
Confidence 457899999999988776 567899999999999887220
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcc-cccc--ccCCCCccEEec
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIES-LPET--LCELYNLQKLDI 394 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l 394 (561)
..+.+..+.++++|++|++++ +.+..+ |..++.+++|++|++++|.++. +|.. ++++++|++|++
T Consensus 68 --~~i~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 68 --LVIRNNTFRGLSSLIILKLDY---------NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp --CEECTTTTTTCTTCCEEECTT---------CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred --ceECcccccccccCCEEeCCC---------CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence 111122345566666666666 444443 4555666666666666666552 3333 556666666666
Q ss_pred CCCCCcCccCcc-cccCCCCCeEEcCCCCCCccCc
Q 043450 395 RRCQDLRELPTG-IGKLKNMRSLLNGDTSSLKYLP 428 (561)
Q Consensus 395 ~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp 428 (561)
++|......|.. ++++++|++|++++|...+..|
T Consensus 137 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 666522222433 5566666666666665433333
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=6.4e-20 Score=186.78 Aligned_cols=239 Identities=17% Similarity=0.152 Sum_probs=140.7
Q ss_pred CCceEEEEeeecCCCCCccc-ccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 241 GEKVRHIGLNFQRGASFPMS-FFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
..+++.+.+..+..+.+|.. +..+++|++|.+.++..
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i------------------------------------------ 81 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI------------------------------------------ 81 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC------------------------------------------
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc------------------------------------------
Confidence 35677788877777777743 56778888888877622
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRC 397 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 397 (561)
....+..+..+++|++|++++ +.+..+| ..++.+++|++|++++|.++.+|.. ++++++|++|++++|
T Consensus 82 -~~~~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 82 -EEIDTYAFAYAHTIQKLYMGF---------NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp -CEECTTTTTTCTTCCEEECCS---------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -cccChhhccCCCCcCEEECCC---------CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 011112244556666666665 4454443 3345566666666666666655544 355666666666665
Q ss_pred CCcCcc-CcccccCCCCCeEEcCCCCCCccCcccccCCc----------------------------------------C
Q 043450 398 QDLREL-PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLT----------------------------------------S 436 (561)
Q Consensus 398 ~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~----------------------------------------~ 436 (561)
. +..+ |..++.+++|++|++++|. +..++ ++.++ +
T Consensus 152 ~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 152 N-LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp C-CCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred c-cCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 5 3333 3345556666666666555 22222 22223 3
Q ss_pred CcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCC
Q 043450 437 LRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKN 516 (561)
Q Consensus 437 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n 516 (561)
|+.|+ +.++.+. .+..+..++.|+.|++++. ......+..+..+++|+.|++++|.+.
T Consensus 228 L~~L~--l~~n~l~-----~~~~l~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~----------- 285 (390)
T 3o6n_A 228 LTILK--LQHNNLT-----DTAWLLNYPGLVEVDLSYN----ELEKIMYHPFVKMQRLERLYISNNRLV----------- 285 (390)
T ss_dssp CCEEE--CCSSCCC-----CCGGGGGCTTCSEEECCSS----CCCEEESGGGTTCSSCCEEECCSSCCC-----------
T ss_pred ccEEE--CCCCCCc-----ccHHHcCCCCccEEECCCC----cCCCcChhHccccccCCEEECCCCcCc-----------
Confidence 33333 2233321 1234555666666666653 223334556777788888888877632
Q ss_pred cchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 517 ENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 517 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
.++..+..+++|+.|++++|.+..+|..+..+++|+.|+|+
T Consensus 286 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 286 ----ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp ----EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred ----ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECC
Confidence 23445567788888888888888888888888888888874
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=1.2e-19 Score=200.28 Aligned_cols=251 Identities=15% Similarity=0.213 Sum_probs=147.8
Q ss_pred cCCceEEEEeeecC-CCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQR-GASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~-~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
...+++.+.+..+. ...+|..+.++++|+.|.+.++..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~----------------------------------------- 527 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG----------------------------------------- 527 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT-----------------------------------------
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC-----------------------------------------
Confidence 35678999998887 577888899999999999988721
Q ss_pred cchhHHHHHHhccc-------cccEEeccCCCCCCCCCcccccccCc--cccccCccCEEecCCCCCccccccccCCCCc
Q 043450 319 LNSSILRELFSKLA-------CLRALVISQPSPIFRPDLNLIREIPE--NVEKLIHLKYLNLSGLRIESLPETLCELYNL 389 (561)
Q Consensus 319 ~~~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L 389 (561)
+....+|..+..+. +|++|++++ |.+..+|. .++.+++|++|++++|.++.+| .++.+++|
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~---------N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGY---------NNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCS---------SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeC---------CcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 11112232233333 666666666 45556665 5666666666666666666665 56666666
Q ss_pred cEEecCCCCCcCccCcccccCCC-CCeEEcCCCCCCccCcccccCCcC--CcccCceeecCccCCCCccCchhh------
Q 043450 390 QKLDIRRCQDLRELPTGIGKLKN-MRSLLNGDTSSLKYLPIGISRLTS--LRTLEKFVVGGGVDGNNTCRLESL------ 460 (561)
Q Consensus 390 ~~L~l~~~~~~~~lp~~~~~l~~-L~~L~l~~~~~~~~lp~~i~~l~~--L~~L~~~~~~~~~~~~~~~~~~~l------ 460 (561)
+.|++++|. +..+|..+..+++ |+.|++++|. +..+|..++.++. |+.|+ +.+|.+.+..+.....+
T Consensus 598 ~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~--Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 598 TDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVD--FSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEE--CCSSCTTTTSSSCSSCTTTCCCC
T ss_pred eEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEE--CcCCcCCCccccchhhhccccCC
Confidence 666666665 4466666666665 6666666665 3455655554433 55555 44444433222211111
Q ss_pred --------------------hccCCCCceEEcCCCCCCCcchhhhc----ccccccccccEEEEeecCCCCCcccccCCC
Q 043450 461 --------------------KNLQLLRECRVEGLSNVSHVDEAERL----QLYNKKNLLRLGLQFGRVADGEGEEGRRKN 516 (561)
Q Consensus 461 --------------------~~L~~L~~l~i~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n 516 (561)
..++.|+.|.+++..- ......... .+.++++|+.|+|+.|.+
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L------------ 740 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKL------------ 740 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCC------------
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCC------------
Confidence 1333444444433211 111000000 011233555666655543
Q ss_pred cchHHHhhcCC--CCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 517 ENDEQLLEALQ--PPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 517 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
..+|..+. .+++|+.|++++|.+..+|.++.++++|+.|+|+
T Consensus 741 ---~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 741 ---TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp ---CCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECC
T ss_pred ---ccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECC
Confidence 24666776 8899999999999988899999999999999884
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1.5e-20 Score=203.27 Aligned_cols=217 Identities=16% Similarity=0.155 Sum_probs=163.8
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccc------------------cCcccc--ccCccCEEecCCCCCc-ccccc
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIRE------------------IPENVE--KLIHLKYLNLSGLRIE-SLPET 382 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~l~-~lp~~ 382 (561)
+|..++++++|++|+|++ |.+.. +|..++ .+++|++|++++|.+. .+|..
T Consensus 198 ip~~l~~l~~L~~L~Ls~---------n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~ 268 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGN---------SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268 (636)
T ss_dssp ECGGGGGCTTCCEEEEES---------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT
T ss_pred CCHHHhcccCCCEEECcC---------CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH
Confidence 566689999999999999 66766 999999 9999999999999965 88999
Q ss_pred ccCCCCccEEecCCCC-CcC-ccCcccccC------CCCCeEEcCCCCCCccCcc--cccCCcCCcccCceeecCccCCC
Q 043450 383 LCELYNLQKLDIRRCQ-DLR-ELPTGIGKL------KNMRSLLNGDTSSLKYLPI--GISRLTSLRTLEKFVVGGGVDGN 452 (561)
Q Consensus 383 i~~L~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~~~~~~~~~~~~ 452 (561)
++++++|++|++++|. ... .+|..++.+ ++|++|++++|. +..+|. .++++++|++|+ +.+|.+.+.
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~--L~~N~l~g~ 345 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLE--CLYNQLEGK 345 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEE--CCSCCCEEE
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEe--CcCCcCccc
Confidence 9999999999999998 444 689988887 999999999998 558998 899999999998 667766444
Q ss_pred CccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccc-cccEEEEeecCCCCCcccc-----------cCCCcchH
Q 043450 453 NTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKN-LLRLGLQFGRVADGEGEEG-----------RRKNENDE 520 (561)
Q Consensus 453 ~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-----------~~~n~~~~ 520 (561)
.+ . +..+++|+.|.+.+.. .. ..+..+.++++ |+.|++++|.+...+.... ...|....
T Consensus 346 ip-~---~~~l~~L~~L~L~~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 346 LP-A---FGSEIKLASLNLAYNQ----IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CC-C---CEEEEEESEEECCSSE----EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hh-h---hCCCCCCCEEECCCCc----cc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence 44 3 4444555555554421 12 44556777777 8888888877653221111 12334445
Q ss_pred HHhhcCC-------CCCCCceEEEeecCCCCCChhh-hcccCCcEEEcC
Q 043450 521 QLLEALQ-------PPVNVEELWIVYYGGNIFPKWL-TLLTNLRDLNLD 561 (561)
Q Consensus 521 ~~~~~l~-------~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~ 561 (561)
.+|..+. .+++|+.|++++|.+..+|..+ ..+++|+.|+|+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 5566666 6678999999999988888776 458888888875
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=186.25 Aligned_cols=209 Identities=17% Similarity=0.150 Sum_probs=102.3
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCcc-ccccCccCEEecCCCCCccccc--cccCCCCccEEecCCCCCcCcc-
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPEN-VEKLIHLKYLNLSGLRIESLPE--TLCELYNLQKLDIRRCQDLREL- 403 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~l- 403 (561)
+.++++|++|++++ |.++.+|.. ++.+++|++|++++|.++.+|. .+.++++|++|++++|..+..+
T Consensus 96 ~~~l~~L~~L~Ls~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 96 FSSLGSLEHLDLSY---------NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp TTTCTTCCEEECCS---------SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCCCCCCCEEECCC---------CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 33444555555554 444444433 4445555555555555544443 3444555555555554323333
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
|..++.+++|++|++++|...+..|..++++++|++|+ +.++.... .+ ......++.|+.|++.+..- ......
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~--l~~n~l~~-~~--~~~~~~~~~L~~L~L~~n~l-~~~~~~ 240 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI--LHMKQHIL-LL--EIFVDVTSSVECLELRDTDL-DTFHFS 240 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE--EECSCSTT-HH--HHHHHHTTTEEEEEEESCBC-TTCCCC
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec--CCCCcccc-ch--hhhhhhcccccEEECCCCcc-cccccc
Confidence 23444455555555555443333344444555555554 33333210 00 00111233333444433211 000000
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh-hcccCCcEEEcC
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL-TLLTNLRDLNLD 561 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~ 561 (561)
..........++.++++.+.+.. .....+|+.+..+++|+.|++++|.+..+|.++ .++++|+.|+|+
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~----------~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITD----------ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp ------CCCCCCEEEEESCBCCH----------HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccccccccchhhccccccccccC----------cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 00011223344444444433211 124467888889999999999999999999886 899999999985
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.7e-19 Score=179.34 Aligned_cols=240 Identities=17% Similarity=0.202 Sum_probs=169.9
Q ss_pred CCceEEEEeeecCCCCCcc-cccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 241 GEKVRHIGLNFQRGASFPM-SFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
...++.+.+..+..+.++. .+..+++|++|.+.++..
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l------------------------------------------ 88 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI------------------------------------------ 88 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC------------------------------------------
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC------------------------------------------
Confidence 4577888888888777764 677888888888887621
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 398 (561)
....+..+..+++|++|++++ |.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.
T Consensus 89 -~~~~~~~~~~l~~L~~L~Ls~---------n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 89 -SKISPGAFAPLVKLERLYLSK---------NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp -CCBCTTTTTTCTTCCEEECCS---------SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred -CeeCHHHhcCCCCCCEEECCC---------CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 112233466788888888888 67778877665 688888998888886654 47888889999998887
Q ss_pred CcC--ccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCC
Q 043450 399 DLR--ELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSN 476 (561)
Q Consensus 399 ~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~ 476 (561)
... ..|..+..+++|++|++++|. +..+|..+. ++|++|+ +.++.+.+.. ...+..+++|+.|++.+..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~--l~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~- 227 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELH--LDGNKITKVD---AASLKGLNNLAKLGLSFNS- 227 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEE--CTTSCCCEEC---TGGGTTCTTCCEEECCSSC-
T ss_pred CCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEE--CCCCcCCccC---HHHhcCCCCCCEEECCCCc-
Confidence 321 456678888889999988887 667777654 7888887 5566553222 3345566667777776532
Q ss_pred CCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh-h-----
Q 043450 477 VSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL-T----- 550 (561)
Q Consensus 477 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~-~----- 550 (561)
.....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|... .
T Consensus 228 ---l~~~~~~~~~~l~~L~~L~L~~N~l~---------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 228 ---ISAVDNGSLANTPHLRELHLNNNKLV---------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp ---CCEECTTTGGGSTTCCEEECCSSCCS---------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred ---CceeChhhccCCCCCCEEECCCCcCc---------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 22333445778888999999887742 45667788888999999999888776433 1
Q ss_pred -cccCCcEEEcC
Q 043450 551 -LLTNLRDLNLD 561 (561)
Q Consensus 551 -~l~~L~~L~L~ 561 (561)
..+.|+.|+++
T Consensus 290 ~~~~~l~~l~l~ 301 (330)
T 1xku_A 290 TKKASYSGVSLF 301 (330)
T ss_dssp TTSCCCSEEECC
T ss_pred cccccccceEee
Confidence 24677777764
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=5.1e-20 Score=203.77 Aligned_cols=271 Identities=18% Similarity=0.185 Sum_probs=179.9
Q ss_pred CCceEEEEeeecCCC-CCccccccc-CceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 241 GEKVRHIGLNFQRGA-SFPMSFFEF-DRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~-~~~~~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
...++.+.+..+... .+|..+... ++|+.|.+.++..... .+..+..... +....+....
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-------~p~~~~~l~~-----------L~~L~L~~n~ 329 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-------VPPFFGSCSL-----------LESLALSSNN 329 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC-------CCGGGGGCTT-----------CCEEECCSSE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc-------cchHHhcCCC-----------ccEEECCCCc
Confidence 456778888777754 566555553 7888888877622100 0000000000 0000011112
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCccccc-ccCccccccC-ccCEEecCCCCCc-cccccccC--CCCccEEe
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIR-EIPENVEKLI-HLKYLNLSGLRIE-SLPETLCE--LYNLQKLD 393 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~~~l~-~L~~L~l~~~~l~-~lp~~i~~--L~~L~~L~ 393 (561)
+...++...+.++++|++|++++ +.+. .+|..+..+. +|++|++++|.+. .+|+.+.. +++|++|+
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~---------n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSF---------NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCS---------SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcC---------CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 22233445577888888888888 5554 6787787776 8888888888876 66776666 77888888
Q ss_pred cCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcC
Q 043450 394 IRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEG 473 (561)
Q Consensus 394 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~ 473 (561)
+++|.....+|..++++++|+.|++++|...+.+|..++++++|+.|+ +.+|.+.+..+. .+..++.|+.|.+.+
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~--L~~n~l~~~~p~---~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK--LWLNMLEGEIPQ---ELMYVKTLETLILDF 475 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE--CCSSCCCSCCCG---GGGGCTTCCEEECCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE--CCCCcccCcCCH---HHcCCCCceEEEecC
Confidence 888885557788888888888888888886667888888888888887 566666544443 344555566666655
Q ss_pred CCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhcc
Q 043450 474 LSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLL 552 (561)
Q Consensus 474 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l 552 (561)
.. ..+..+..+.++++|+.|++++|.+. +.+|.++..+++|+.|++++|.+. .+|..+.++
T Consensus 476 N~----l~~~~p~~l~~l~~L~~L~L~~N~l~--------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 476 ND----LTGEIPSGLSNCTNLNWISLSNNRLT--------------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp SC----CCSCCCGGGGGCTTCCEEECCSSCCC--------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred Cc----ccCcCCHHHhcCCCCCEEEccCCccC--------------CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 32 23345566778888888888877643 335667777888888888888876 678888888
Q ss_pred cCCcEEEcC
Q 043450 553 TNLRDLNLD 561 (561)
Q Consensus 553 ~~L~~L~L~ 561 (561)
++|+.|+|+
T Consensus 538 ~~L~~L~Ls 546 (768)
T 3rgz_A 538 RSLIWLDLN 546 (768)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEECC
Confidence 888888874
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.5e-19 Score=194.29 Aligned_cols=207 Identities=18% Similarity=0.114 Sum_probs=117.0
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcC
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLR 401 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~ 401 (561)
++..+..+++|++|++++ +.+..+|+ .|+.+++|++|+|++|.++.+|+ .++++++|++|++++|. +.
T Consensus 67 p~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~ 136 (597)
T 3oja_B 67 PAALLDSFRQVELLNLND---------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LS 136 (597)
T ss_dssp CTHHHHHCCCCSEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CHHHHccCCCCcEEECCC---------CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CC
Confidence 334455666666666666 44555443 55666666666666666665543 34666666666666665 55
Q ss_pred ccCcc-cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCc-----------------------
Q 043450 402 ELPTG-IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRL----------------------- 457 (561)
Q Consensus 402 ~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~----------------------- 457 (561)
.+|.. ++++++|++|++++|...+..|..++.+++|++|+ +.+|.+.+.....+
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~ 214 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ--LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--CTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCS
T ss_pred CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE--CcCCCCCCcChhhhhhhhhhhcccCccccccCCchhh
Confidence 55544 35666666666666664444444566666666665 34443322111111
Q ss_pred ---------------------------------hhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecC
Q 043450 458 ---------------------------------ESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRV 504 (561)
Q Consensus 458 ---------------------------------~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 504 (561)
..+..++.|+.|++++. ......+..+..+++|+.|+|++|.
T Consensus 215 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~- 289 (597)
T 3oja_B 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN----ELEKIMYHPFVKMQRLERLYISNNR- 289 (597)
T ss_dssp EEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS----CCCEEESGGGTTCSSCCEEECTTSC-
T ss_pred eeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC----ccCCCCHHHhcCccCCCEEECCCCC-
Confidence 11222333333333321 1122223344445555555555444
Q ss_pred CCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 505 ADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 505 ~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
...++..+..+++|+.|++++|.+..+|.++..+++|+.|+|+
T Consensus 290 --------------l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 290 --------------LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp --------------CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECC
T ss_pred --------------CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECC
Confidence 2234556677889999999999988899888889999998875
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=4.8e-19 Score=176.13 Aligned_cols=195 Identities=18% Similarity=0.160 Sum_probs=109.8
Q ss_pred HHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCc--Ccc
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDL--REL 403 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~--~~l 403 (561)
.+.++++|++|++++ |.+..+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|... ...
T Consensus 97 ~~~~l~~L~~L~L~~---------n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 97 AFSPLRKLQKLYISK---------NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp GSTTCTTCCEEECCS---------SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred HhhCcCCCCEEECCC---------CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 355666666777666 55666665554 566677777666666554 3566667777777666621 133
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
|..+..+ +|++|++++|. +..+|..+. ++|++|+ +.+|.+....+..+. .+++|+.|++.+. .....
T Consensus 166 ~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~--l~~n~i~~~~~~~l~---~l~~L~~L~L~~N----~l~~~ 232 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELH--LDHNKIQAIELEDLL---RYSKLYRLGLGHN----QIRMI 232 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCB--CCSSCCCCCCTTSST---TCTTCSCCBCCSS----CCCCC
T ss_pred cccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEE--CCCCcCCccCHHHhc---CCCCCCEEECCCC----cCCcC
Confidence 4455555 66666666666 455665543 5666666 455554333333333 3334444444432 11222
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh-hc------ccCCc
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL-TL------LTNLR 556 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~-~~------l~~L~ 556 (561)
.+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|... .. .++|+
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~---------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS---------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC---------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred ChhHhhCCCCCCEEECCCCcCe---------------ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 2334566677777777766532 34555666777777777777766655322 11 35566
Q ss_pred EEEc
Q 043450 557 DLNL 560 (561)
Q Consensus 557 ~L~L 560 (561)
.|++
T Consensus 298 ~L~l 301 (332)
T 2ft3_A 298 GISL 301 (332)
T ss_dssp EEEC
T ss_pred ceEe
Confidence 6665
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=189.68 Aligned_cols=264 Identities=19% Similarity=0.196 Sum_probs=137.0
Q ss_pred cCCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+..++.+.+..+....++ ..+..+++|++|.+.++..
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i----------------------------------------- 68 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV----------------------------------------- 68 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----------------------------------------
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-----------------------------------------
Confidence 3567888999888887764 5788899999999988722
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCcc-ccccCccCEEecCCCCCccc-cccccCCCCccEEecCC
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPEN-VEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRR 396 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 396 (561)
....+..|.++.+|++|+|++ |.+..+|.. ++.+++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 69 --~~~~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 69 --SAVEPGAFNNLFNLRTLGLRS---------NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp --CEECTTTTTTCTTCCEEECCS---------SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred --CEeChhhhhCCccCCEEECCC---------CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC
Confidence 111122344555666666665 445555433 35555566666665555533 34455555555555555
Q ss_pred CCCcCccCcccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCC
Q 043450 397 CQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLS 475 (561)
Q Consensus 397 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~ 475 (561)
|......|..+..+++|+.|++++|. +..+|. .++++++|+.|+ +.++.+....+..+ ..++.|+.|++.+..
T Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~--l~~n~i~~~~~~~~---~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 138 NDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLR--LRHLNINAIRDYSF---KRLYRLKVLEISHWP 211 (477)
T ss_dssp TTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEE--EESCCCCEECTTCS---CSCTTCCEEEEECCT
T ss_pred CccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEe--CCCCcCcEeChhhc---ccCcccceeeCCCCc
Confidence 55222223345555555555555554 333332 345555555554 33333322111112 122222222222211
Q ss_pred CC--------------------CCcchhhhcccccccccccEEEEeecCCCCCccc----------ccCCCcchHHHhhc
Q 043450 476 NV--------------------SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEE----------GRRKNENDEQLLEA 525 (561)
Q Consensus 476 ~~--------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~~~n~~~~~~~~~ 525 (561)
.. +.........+..+++|+.|+|++|.+....... ....|......+..
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 00 0011111123445555666666555432211100 00112223334566
Q ss_pred CCCCCCCceEEEeecCCCCCChh-hhcccCCcEEEcC
Q 043450 526 LQPPVNVEELWIVYYGGNIFPKW-LTLLTNLRDLNLD 561 (561)
Q Consensus 526 l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L~ 561 (561)
+..+++|+.|++++|.+..+|.. +..+++|+.|+|+
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 77788888888888888777754 4778888888874
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=3.9e-19 Score=184.56 Aligned_cols=199 Identities=23% Similarity=0.278 Sum_probs=110.2
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT 405 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~ 405 (561)
|.++.+|++|+|++ |.+..++ ..+..+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|.
T Consensus 95 ~~~l~~L~~L~Ls~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 164 (452)
T 3zyi_A 95 FRHLHHLEVLQLGR---------NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPS 164 (452)
T ss_dssp TTTCTTCCEEECCS---------SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECT
T ss_pred cCCCCCCCEEECCC---------CccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCH
Confidence 45566666666666 4455443 4456666666666666666655543 5556666666666665 444443
Q ss_pred -ccccCCCCCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 406 -GIGKLKNMRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 406 -~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
.+.++++|+.|++++|..++.+|.. +..+++|+.|+ +.+|.+.. +..+..+.+|+.|++++. .....
T Consensus 165 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~--L~~n~l~~-----~~~~~~l~~L~~L~Ls~N----~l~~~ 233 (452)
T 3zyi_A 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN--LGMCNIKD-----MPNLTPLVGLEELEMSGN----HFPEI 233 (452)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE--CTTSCCSS-----CCCCTTCTTCCEEECTTS----CCSEE
T ss_pred hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE--CCCCcccc-----cccccccccccEEECcCC----cCccc
Confidence 4556666666666665555555543 55666666665 44444321 223444555555555442 22333
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChh-hhcccCCcEEEcC
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKW-LTLLTNLRDLNLD 561 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L~ 561 (561)
.+..|.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..+|.. +..+++|+.|+|+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSL--------------IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCE--------------ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred CcccccCccCCCEEEeCCCcCce--------------ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 34455666666666666554321 1234455566666666666666655543 3556666666653
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=1.6e-19 Score=194.89 Aligned_cols=202 Identities=17% Similarity=0.053 Sum_probs=155.5
Q ss_pred HhccccccEEeccCCCCCCCCCccccccc---CccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccC
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREI---PENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
+..+++|++|++++ +.+..+ |..++.+++|++|++++|.+..+|..+..+++|++|++++|......|
T Consensus 346 ~~~l~~L~~L~ls~---------n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 346 KVALPSLSYLDLSR---------NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp CCCCTTCCEEECCS---------SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred hccCCCCCEEECcC---------CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC
Confidence 45678888888888 556555 677888899999999999988888888899999999999988444445
Q ss_pred -cccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCC-CccCchhhhccCCCCceEEcCCCCCCCcch
Q 043450 405 -TGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGN-NTCRLESLKNLQLLRECRVEGLSNVSHVDE 482 (561)
Q Consensus 405 -~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~-~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~ 482 (561)
..+..+++|++|++++|......|..++++++|++|+ +.++.+.+. .+. .+..++.|+.|++++. ....
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n----~l~~ 487 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK--MAGNSFKDNTLSN---VFANTTNLTFLDLSKC----QLEQ 487 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE--CTTCEEGGGEECS---CCTTCTTCCEEECTTS----CCCE
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE--CCCCcCCCcchHH---hhccCCCCCEEECCCC----cCCc
Confidence 4788899999999999987677788888999999997 666655321 232 3455666777777654 2334
Q ss_pred hhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhccc-CCcEEEcC
Q 043450 483 AERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLT-NLRDLNLD 561 (561)
Q Consensus 483 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~L~ 561 (561)
..+..+.++++|+.|++++|.+. ...|..+..+++|+.|++++|.++.+|.++..++ +|+.|+|+
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLL--------------FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCS--------------CEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECC
T ss_pred cChhhhcccccCCEEECCCCcCC--------------CcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEcc
Confidence 45566788899999999988743 2346778888999999999999888998888887 59998874
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.9e-19 Score=176.87 Aligned_cols=231 Identities=16% Similarity=0.137 Sum_probs=172.9
Q ss_pred cCCceEEEEeeecCCCCCccc-ccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASFPMS-FFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~~~-~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
....++.+.+..+..+.++.. +.++++|+.|.+.++.. .
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l----------------------------------------~ 65 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL----------------------------------------S 65 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC----------------------------------------C
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc----------------------------------------C
Confidence 346889999999888888754 68899999999988721 0
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccc--cccCCCCccEEecCC
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPE--TLCELYNLQKLDIRR 396 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~ 396 (561)
.....+..+..+.+|++|++++ +.+..+|..+..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 66 -~~~~~~~~~~~~~~L~~L~Ls~---------n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 66 -FKGCCSQSDFGTTSLKYLDLSF---------NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp -EEEEEEHHHHSCSCCCEEECCS---------CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred -cccCcccccccccccCEEECCC---------CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence 0011122345689999999999 7788888889999999999999999987764 688999999999999
Q ss_pred CCCcCccCcccccCCCCCeEEcCCCCCCc-cCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCC
Q 043450 397 CQDLRELPTGIGKLKNMRSLLNGDTSSLK-YLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLS 475 (561)
Q Consensus 397 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~ 475 (561)
|......|..+..+++|++|++++|...+ .+|..++.+++|++|+ +.++.+.+..+ ..+..++.|+.|.+.+..
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~--Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD--LSQCQLEQLSP---TAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE--CTTSCCCEECT---TTTTTCTTCCEEECTTSC
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE--CCCCCcCCcCH---HHhcCCCCCCEEECCCCc
Confidence 98555566778899999999999998544 4788899999999998 66666643333 334556667777776533
Q ss_pred CCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCC-CCCceEEEeecCCC
Q 043450 476 NVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPP-VNVEELWIVYYGGN 543 (561)
Q Consensus 476 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 543 (561)
........+..+++|+.|++++|.+... .+..+..+ ++|+.|++++|++.
T Consensus 211 ----l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 211 ----FFSLDTFPYKCLNSLQVLDYSLNHIMTS--------------KKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ----CSBCCSGGGTTCTTCCEEECTTSCCCBC--------------SSSSCCCCCTTCCEEECTTCCEE
T ss_pred ----cCccChhhccCcccCCEeECCCCCCccc--------------CHHHHHhhhccCCEEEccCCCee
Confidence 2222333577889999999998875332 34556666 48999999999864
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=5.5e-19 Score=182.78 Aligned_cols=103 Identities=29% Similarity=0.409 Sum_probs=46.9
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT 405 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~ 405 (561)
|.++.+|++|+|++ |.++.+|. .+..+++|++|++++|.++.+|. .+.++++|++|++++|..+..+|.
T Consensus 108 ~~~l~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 108 FNGLANLNTLELFD---------NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp GTTCSSCCEEECCS---------SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ccCCccCCEEECCC---------CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 34444455555544 34444433 24444455555555554444432 344445555555544443444433
Q ss_pred -ccccCCCCCeEEcCCCCCCccCcccccCCcCCcccC
Q 043450 406 -GIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLE 441 (561)
Q Consensus 406 -~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 441 (561)
.+.++++|++|++++|. +..+| .+..+++|+.|+
T Consensus 179 ~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELD 213 (440)
T ss_dssp TTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEE
T ss_pred chhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEE
Confidence 34444455555554444 33444 244444444444
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=180.62 Aligned_cols=195 Identities=22% Similarity=0.242 Sum_probs=148.3
Q ss_pred EEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhHHH
Q 043450 246 HIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSILR 325 (561)
Q Consensus 246 ~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (561)
.+.........+|..+ .++++.|.+.++.. ....+
T Consensus 15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l-------------------------------------------~~~~~ 49 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRI-------------------------------------------KTLNQ 49 (477)
T ss_dssp EEECCSCCCSSCCSCC--CTTCSEEECCSSCC-------------------------------------------CEECT
T ss_pred EEEeCCCCcCcCCCCC--CCCCcEEECCCCcc-------------------------------------------ceECH
Confidence 3444455566777544 36899999988722 12223
Q ss_pred HHHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCcc
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~l 403 (561)
..|.++++|++|+|++ +.+..+ |..++.+++|++|+|++|.++.+|.. +.++++|++|++++|......
T Consensus 50 ~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 50 DEFASFPHLEELELNE---------NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp TTTTTCTTCCEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred hHccCCCCCCEEECCC---------CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence 3477899999999999 777776 77899999999999999999988865 789999999999999944455
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
|..+..+++|++|++++|......|..++.+++|+.|+ +.++.+.... ...+..++.|+.|.+.+.. ....
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~----i~~~ 191 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT--LEKCNLTSIP---TEALSHLHGLIVLRLRHLN----INAI 191 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE--EESCCCSSCC---HHHHTTCTTCCEEEEESCC----CCEE
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEE--CCCCcCcccC---hhHhcccCCCcEEeCCCCc----CcEe
Confidence 77899999999999999996566677899999999998 7777663322 2346677788888887643 2233
Q ss_pred hhcccccccccccEEEEeec
Q 043450 484 ERLQLYNKKNLLRLGLQFGR 503 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~ 503 (561)
....+..+++|+.|++++|.
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCT
T ss_pred ChhhcccCcccceeeCCCCc
Confidence 44567788888888888765
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=3.9e-18 Score=170.69 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=119.2
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+++|++|++++ +.+..+|. +..+++|++|++++|.....++.+..+++|++|++++|. +..++. +
T Consensus 106 ~~~l~~L~~L~l~~---------n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~ 173 (347)
T 4fmz_A 106 LQNLTNLRELYLNE---------DNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-I 173 (347)
T ss_dssp GTTCTTCSEEECTT---------SCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred HcCCCcCCEEECcC---------CcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-h
Confidence 45566666666666 45555554 566666666666666533333336666666666666665 444444 6
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
..+++|+.|++++|. +..++. +..+++|+.|+ +.++.... +..+..++.|+.|.+.+..- ... +.
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~--l~~n~l~~-----~~~~~~~~~L~~L~l~~n~l-~~~----~~- 238 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFT--AYVNQITD-----ITPVANMTRLNSLKIGNNKI-TDL----SP- 238 (347)
T ss_dssp GGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEE--CCSSCCCC-----CGGGGGCTTCCEEECCSSCC-CCC----GG-
T ss_pred ccCCCCCEEEccCCc-cccccc-ccCCCccceee--cccCCCCC-----CchhhcCCcCCEEEccCCcc-CCC----cc-
Confidence 666677777776666 444443 56666666665 33443321 12255666666666665432 111 11
Q ss_pred cccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 488 LYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
+..+++|+.|++++|.+.. .+.+..+++|+.|++++|.+..+| .+..+++|+.|+|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~----------------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD----------------INAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLN 295 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC----------------CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred hhcCCCCCEEECCCCccCC----------------ChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECc
Confidence 6677788888888776432 135678889999999999988875 57899999999875
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=7.4e-19 Score=178.89 Aligned_cols=208 Identities=17% Similarity=0.195 Sum_probs=150.1
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCc
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDL 400 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~ 400 (561)
.++..+..+++|++|++++ +.+..+|. .++.+++|++|++++|.++.+| ..++++++|++|++++|. +
T Consensus 60 l~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 129 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLND---------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-L 129 (390)
T ss_dssp ECTHHHHHCCCCSEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred CChhHhcccccCcEEECCC---------CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-c
Confidence 4455678899999999999 77877764 7899999999999999999775 458999999999999998 7
Q ss_pred CccCcc-cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccC---------------
Q 043450 401 RELPTG-IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQ--------------- 464 (561)
Q Consensus 401 ~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~--------------- 464 (561)
..+|.. ++.+++|++|++++|......|..++.+++|++|+ +.++.+.... +..+++|+
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ--LSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE--CCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECC
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE--CCCCcCCccc---cccccccceeecccccccccCCC
Confidence 888876 58999999999999995555566799999999998 6666654322 22222221
Q ss_pred -CCCceEEcCCCCC-----------------CCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcC
Q 043450 465 -LLRECRVEGLSNV-----------------SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEAL 526 (561)
Q Consensus 465 -~L~~l~i~~~~~~-----------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l 526 (561)
.|+.+.+.+..-. +.... ...+..+++|+.|++++|.+ ....+..+
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l--------------~~~~~~~~ 268 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL--------------EKIMYHPF 268 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCC--------------CEEESGGG
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcC--------------CCcChhHc
Confidence 1222222211100 00000 12355666777777776653 22346677
Q ss_pred CCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 527 QPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 527 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
..+++|+.|++++|.+..+|..+..+++|+.|+|+
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred cccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence 88889999999999988888777888999999875
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.8e-18 Score=171.79 Aligned_cols=245 Identities=14% Similarity=0.104 Sum_probs=139.5
Q ss_pred CCceEEEEeeecCCCCC-cccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 241 GEKVRHIGLNFQRGASF-PMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
...++.+.+..+....+ +..+..+++|++|.+.++... .
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------------------------~- 114 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK---------------------------------------E- 114 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS---------------------------------------B-
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC---------------------------------------c-
Confidence 34567777777666555 456667777777777666110 0
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCc---cccccccCCCCccEEecC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIE---SLPETLCELYNLQKLDIR 395 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~ 395 (561)
++. .-.++|++|++++ +.+..++. .+..+++|++|++++|.+. ..|..+.++++|++|+++
T Consensus 115 ----l~~--~~~~~L~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 115 ----LPE--KMPKTLQELRVHE---------NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp ----CCS--SCCTTCCEEECCS---------SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred ----cCh--hhcccccEEECCC---------CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 000 0114677777777 55655543 3566777777777777764 335566777777777777
Q ss_pred CCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCC
Q 043450 396 RCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLS 475 (561)
Q Consensus 396 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~ 475 (561)
+|. +..+|..+. ++|++|++++|......|..++.+++|+.|+ +.++.+.+..+ ..+..++.|+.|++++..
T Consensus 180 ~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 180 DTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLG--LSFNSISAVDN---GSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEE--CCSSCCCEECT---TTGGGSTTCCEEECCSSC
T ss_pred CCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEE--CCCCcCceeCh---hhccCCCCCCEEECCCCc
Confidence 776 666666443 6777777777764444456677777777776 45554432222 234445556666665432
Q ss_pred CCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC---CCChhhhcc
Q 043450 476 NVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN---IFPKWLTLL 552 (561)
Q Consensus 476 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~---~lp~~~~~l 552 (561)
- . ..+..+..+++|+.|++++|.+....... .. ........+.|+.|++++|++. ..|..+..+
T Consensus 252 l-~----~lp~~l~~l~~L~~L~l~~N~i~~~~~~~-------f~-~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 252 L-V----KVPGGLADHKYIQVVYLHNNNISAIGSND-------FC-PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp C-S----SCCTTTTTCSSCCEEECCSSCCCCCCTTS-------SS-CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred C-c----cCChhhccCCCcCEEECCCCcCCccChhh-------cC-CcccccccccccceEeecCcccccccCccccccc
Confidence 1 1 23344666777777777777654331110 00 0000112356777777777754 234555666
Q ss_pred cCCcEEEcC
Q 043450 553 TNLRDLNLD 561 (561)
Q Consensus 553 ~~L~~L~L~ 561 (561)
++|+.++|+
T Consensus 319 ~~l~~l~L~ 327 (330)
T 1xku_A 319 YVRAAVQLG 327 (330)
T ss_dssp CCGGGEEC-
T ss_pred cceeEEEec
Confidence 777777664
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=1.6e-18 Score=187.02 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=111.3
Q ss_pred cCCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+..++.+.+..+....++ ..+.++++|++|.+.++..
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----------------------------------------- 68 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI----------------------------------------- 68 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----------------------------------------
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc-----------------------------------------
Confidence 3467888888888877666 3778888888888887721
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcccc-ccccCCCCccEEecCC
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRR 396 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~ 396 (561)
....+..|.++++|++|++++ |.+..+ |..|+.+++|++|++++|.++.+| ..++++++|++|++++
T Consensus 69 --~~i~~~~~~~l~~L~~L~Ls~---------n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 69 --ETIEDKAWHGLHHLSNLILTG---------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp --CEECTTTTTTCTTCCEEECTT---------CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred --cccCHHHhhchhhcCEeECCC---------CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 122334467888899999988 667766 777888889999999998888766 6688889999999998
Q ss_pred CCCcC-ccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCc
Q 043450 397 CQDLR-ELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLR 438 (561)
Q Consensus 397 ~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 438 (561)
|.... .+|..++++++|++|++++|...+..|..++.+++|+
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 88333 5788888899999999988885555555666666655
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=192.84 Aligned_cols=151 Identities=21% Similarity=0.219 Sum_probs=101.2
Q ss_pred cCCceEEEEeeecCCCCC-cccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASF-PMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+..++.+.+..+.+..+ +..+..+++|++|.+.++..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~----------------------------------------- 60 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT----------------------------------------- 60 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----------------------------------------
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-----------------------------------------
Confidence 567899999999988766 47889999999999988721
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcc-cccc--ccCCCCccEEec
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIES-LPET--LCELYNLQKLDI 394 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l 394 (561)
...+.+..|.++++|++|+|++ |.+..+ |..|+.+++|++|+|++|.+.. +|.. ++++++|++|++
T Consensus 61 -~~~i~~~~f~~L~~L~~L~Ls~---------N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 61 -PLTIDKEAFRNLPNLRILDLGS---------SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp -CCEECTTTTSSCTTCCEEECTT---------CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred -ccccCHHHhcCCCCCCEEECCC---------CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 1122234466777777777777 555554 6667777777777777777663 4544 677777777777
Q ss_pred CCCCCcCccC-cccccCCCCCeEEcCCCCCCccCcccccCC--cCCcccC
Q 043450 395 RRCQDLRELP-TGIGKLKNMRSLLNGDTSSLKYLPIGISRL--TSLRTLE 441 (561)
Q Consensus 395 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l--~~L~~L~ 441 (561)
++|......| ..++++++|++|++++|......|..++.+ ++|+.|+
T Consensus 131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 7776333222 457777777777777776544455555444 4455554
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=4.8e-18 Score=170.04 Aligned_cols=191 Identities=19% Similarity=0.288 Sum_probs=148.4
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+++|++|++++ +.+..++. ++.+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +
T Consensus 151 ~~~l~~L~~L~l~~---------~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~ 217 (347)
T 4fmz_A 151 LSNMTGLNYLTVTE---------SKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP-V 217 (347)
T ss_dssp GTTCTTCCEEECCS---------SCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-G
T ss_pred hhhCCCCcEEEecC---------CCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCch-h
Confidence 66788888888888 55666655 7788889999999998887776 8888999999999887 666655 7
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
..+++|++|++++|. +..+|. +..+++|++|+ +.++.+.. +..+..+++|+.|.+.+.. +... ..
T Consensus 218 ~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~--l~~n~l~~-----~~~~~~l~~L~~L~l~~n~-l~~~-----~~ 282 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLE--IGTNQISD-----INAVKDLTKLKMLNVGSNQ-ISDI-----SV 282 (347)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE--CCSSCCCC-----CGGGTTCTTCCEEECCSSC-CCCC-----GG
T ss_pred hcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEE--CCCCccCC-----ChhHhcCCCcCEEEccCCc-cCCC-----hh
Confidence 888999999999988 566665 88889999987 55665422 3456777788888887653 2221 34
Q ss_pred cccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 488 LYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
+..+++|+.|++++|.+ ....++.+..+++|+.|++++|.+..+|. +..+++|+.|+++
T Consensus 283 ~~~l~~L~~L~L~~n~l--------------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQL--------------GNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFA 341 (347)
T ss_dssp GGGCTTCSEEECCSSCC--------------CGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSS
T ss_pred hcCCCCCCEEECcCCcC--------------CCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehh
Confidence 77889999999998764 33445667788999999999999988876 8899999999985
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=182.54 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=92.5
Q ss_pred CceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 242 EKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 242 ~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
..++.+.+..+....++ ..+..+++|++|.+.++..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------------------------------------------- 57 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI------------------------------------------- 57 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-------------------------------------------
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc-------------------------------------------
Confidence 67788888887776665 4677788888888877621
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcc--ccccccCCCCccEEecCCCC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIES--LPETLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~ 398 (561)
....+..+.++++|++|++++ |.++.+|.. .+++|++|++++|.++. +|..++++++|++|++++|.
T Consensus 58 ~~~~~~~~~~l~~L~~L~Ls~---------N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 58 QYLDISVFKFNQELEYLDLSH---------NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CEEEGGGGTTCTTCCEEECCS---------SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred CCcChHHhhcccCCCEEecCC---------CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 122334467788888888888 677777766 67888888888888774 56778888888888888877
Q ss_pred CcCccCcccccCCCC--CeEEcCCCCC--CccCccccc
Q 043450 399 DLRELPTGIGKLKNM--RSLLNGDTSS--LKYLPIGIS 432 (561)
Q Consensus 399 ~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~lp~~i~ 432 (561)
+.. ..+..+++| +.|++++|.. .+..|..++
T Consensus 127 -l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 127 -LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp -CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred -cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 433 245556666 7777766654 334444333
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=5.7e-19 Score=183.64 Aligned_cols=202 Identities=17% Similarity=0.194 Sum_probs=135.1
Q ss_pred HhccccccEEeccCCCCCCCCCccccccc-Ccc-ccccCccCEEecCCCCCccc-ccccc--------------------
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREI-PEN-VEKLIHLKYLNLSGLRIESL-PETLC-------------------- 384 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~-~~~l~~L~~L~l~~~~l~~l-p~~i~-------------------- 384 (561)
+..+++|++|++++ |.+..+ |.. ++.+++|++|++++|.++.+ |..+.
T Consensus 125 ~~~l~~L~~L~L~~---------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 125 FKPLTSLEMLVLRD---------NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp TTTCTTCCEEECCS---------SBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred ccCcccCCEEECCC---------CccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 55666777777776 555554 433 56667777777777766533 33333
Q ss_pred --------------CCCCccEEecCCCCCcCccCccccc---------------------------------------CC
Q 043450 385 --------------ELYNLQKLDIRRCQDLRELPTGIGK---------------------------------------LK 411 (561)
Q Consensus 385 --------------~L~~L~~L~l~~~~~~~~lp~~~~~---------------------------------------l~ 411 (561)
.+++|++|++++|......|..+.. .+
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence 3356777777777633333332221 25
Q ss_pred CCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccc
Q 043450 412 NMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 491 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l 491 (561)
+|+.|++++|......|..++++++|++|+ +.++.+.+..+. .+..++.|+.|++++. ......+..+.++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l 346 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLT--LAQNEINKIDDN---AFWGLTHLLKLNLSQN----FLGSIDSRMFENL 346 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEE--CTTSCCCEECTT---TTTTCTTCCEEECCSS----CCCEECGGGGTTC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEE--CCCCcccccChh---HhcCcccCCEEECCCC----ccCCcChhHhcCc
Confidence 788888888876666677788889999988 666666433333 3445666777777653 2334445667888
Q ss_pred cccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh-hcccCCcEEEcC
Q 043450 492 KNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL-TLLTNLRDLNLD 561 (561)
Q Consensus 492 ~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~ 561 (561)
++|+.|++++|.+. ...+..+..+++|++|++++|.+..+|..+ ..+++|+.|+|+
T Consensus 347 ~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 347 DKLEVLDLSYNHIR--------------ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TTCCEEECCSSCCC--------------EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ccCCEEECCCCccc--------------ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 99999999988742 223667888999999999999988887654 889999999885
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=1.4e-18 Score=187.45 Aligned_cols=273 Identities=19% Similarity=0.162 Sum_probs=191.4
Q ss_pred CCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 241 GEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
...++.+.+..+....+|..+..+++|++|.+.++............ ..... .+.+. .....
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------l~~L~------~L~l~-----~n~~~ 338 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-------FPSLT------HLSIK-----GNTKR 338 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-------CTTCS------EEECC-----SCSSC
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc-------cCcCC------EEECC-----CCCcc
Confidence 46789999999999999988999999999999988332110000000 00000 00000 00111
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCccccccc---CccccccCccCEEecCCCCCccc-cccccCCCCccEEecCC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREI---PENVEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRR 396 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~ 396 (561)
....+..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSH---------DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCS---------SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred cccchhhhhccCcCCEEECCC---------CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 112223356788888888888 555554 56678889999999999988754 66788899999999999
Q ss_pred CCCcCccCc-ccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCC
Q 043450 397 CQDLRELPT-GIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLS 475 (561)
Q Consensus 397 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~ 475 (561)
|......|. .+..+++|+.|++++|......|..++.+++|++|+ +.+|.+.+........+..++.|+.|++++..
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN--LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE--CTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE--CCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 884444444 478889999999999986666677788899999998 66666533222233456777778888887643
Q ss_pred CCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCC-hhhhcccC
Q 043450 476 NVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFP-KWLTLLTN 554 (561)
Q Consensus 476 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~l~~ 554 (561)
.....+..+.++++|+.|++++|.+ ....++.+..+++| .|++++|.++.+| ..+..+++
T Consensus 488 ----l~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 488 ----LSSIDQHAFTSLKMMNHVDLSHNRL--------------TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp ----CCEECTTTTTTCTTCCEEECCSSCC--------------CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred ----cCccChhhhccccCCCEEECCCCcc--------------CcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 3344456788899999999998764 44567788899999 9999999988765 45689999
Q ss_pred CcEEEcC
Q 043450 555 LRDLNLD 561 (561)
Q Consensus 555 L~~L~L~ 561 (561)
|+.|+|+
T Consensus 549 L~~L~l~ 555 (606)
T 3t6q_A 549 QRTINLR 555 (606)
T ss_dssp SSEEECT
T ss_pred CCEEeCC
Confidence 9999985
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=1e-18 Score=191.13 Aligned_cols=249 Identities=18% Similarity=0.216 Sum_probs=164.4
Q ss_pred cCCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+.+++++.+..+....++ ..+.++++|++|.+.++..
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----------------------------------------- 61 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI----------------------------------------- 61 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC-----------------------------------------
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc-----------------------------------------
Confidence 3478999999999887777 4688999999999988722
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCcccc-ccccCCCCccEEecCC
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRR 396 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~ 396 (561)
....+..+.++++|++|++++ +.+..+|. .|+.+++|++|++++|.+..+| ..++++++|++|++++
T Consensus 62 --~~~~~~~~~~l~~L~~L~L~~---------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 130 (680)
T 1ziw_A 62 --SKLEPELCQKLPMLKVLNLQH---------NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130 (680)
T ss_dssp --CCCCTTHHHHCTTCCEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS
T ss_pred --CccCHHHHhcccCcCEEECCC---------CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC
Confidence 122344577899999999998 77888876 5889999999999999988776 5689999999999999
Q ss_pred CCCcCccCcccccCCCCCeEEcCCCCCCccCccccc--CCcCCcccCceeecCccCCCCccCchhhhcc-----------
Q 043450 397 CQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGIS--RLTSLRTLEKFVVGGGVDGNNTCRLESLKNL----------- 463 (561)
Q Consensus 397 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~--~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L----------- 463 (561)
|......|..++++++|++|++++|...+..|..++ .+++|++|+ +.++.+.+..+..+..+.+|
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE--LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE--CTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE--CCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 985555566788999999999999884443344343 557888887 55665554444444444433
Q ss_pred -------------CCCCceEEcCCCCCCCcchhhhcccccccc--cccEEEEeecCCCCCcccccCCCcchHHHhhcCCC
Q 043450 464 -------------QLLRECRVEGLSNVSHVDEAERLQLYNKKN--LLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQP 528 (561)
Q Consensus 464 -------------~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~ 528 (561)
+.|+.|.+.+. ......+..+.++.. |+.|++++|.+.. ..+..+..
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n----~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~--------------~~~~~~~~ 270 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNS----QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV--------------VGNDSFAW 270 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTS----CCCEECTTTTGGGGGSCCCEEECTTSCCCE--------------ECTTTTTT
T ss_pred hhhHHHHHHHhhhccccEEEccCC----cccccChhHhhccCcCCCCEEECCCCCcCc--------------cCcccccC
Confidence 23444444432 112223334444443 7777777665321 12334455
Q ss_pred CCCCceEEEeecCCCC-CChhhhcccCCcEEEc
Q 043450 529 PVNVEELWIVYYGGNI-FPKWLTLLTNLRDLNL 560 (561)
Q Consensus 529 ~~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~L 560 (561)
+++|++|++++|.+.. .|.++..+++|+.|+|
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp CTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred cccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 5555555555555432 2334444444444443
No 35
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.76 E-value=8.1e-19 Score=188.58 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=140.5
Q ss_pred CCCcEEEEEcCchHHHhhcCCcceEeC---CCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHh
Q 043450 3 LPGSKIVVTTRNVSVARMMRSTNIISI---KPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTG 79 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~~~~~~~~~~~v---~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g 79 (561)
++||+||||||++.++..+. ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|
T Consensus 255 ~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a 328 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIG 328 (591)
T ss_dssp CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHH
Confidence 57999999999999887654 345555 5899999999999998632 12234568999999999999999999
Q ss_pred hhccccccccccCCcchhHHHHHHHhhhhhhh--------hhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCccc
Q 043450 80 NLLCDKRTGNLLSSKSIVNEWQRILDSEVWKV--------EEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYNM 151 (561)
Q Consensus 80 ~~L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~--------~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~i 151 (561)
++++.++ ..|...+....... ......+..++..||+.|++ ..|.||+++|+||+|+.+
T Consensus 329 ~~l~~~~-----------~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i 395 (591)
T 1z6t_A 329 ALLRDFP-----------NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKV 395 (591)
T ss_dssp HHHHHST-----------TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCE
T ss_pred HHHhcCc-----------hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCcc
Confidence 9986653 24655544322111 11224567789999999999 789999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEecHHHHHHHHHhh
Q 043450 152 NKRELINLWMAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKMHDIVHDFAQFVS 220 (561)
Q Consensus 152 ~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~mhdlv~~~~~~i~ 220 (561)
+...+...|.++ .+.+..++..|++++|++....+ ... +|+||++++++++...
T Consensus 396 ~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~~---~~~-~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 396 PTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRNG---KSF-RYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEET---TEE-EEECCHHHHHHHHHHT
T ss_pred CHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecCC---Ccc-EEEEcHHHHHHHHhhh
Confidence 999999999543 23467789999999999854322 222 3999999999998874
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=2.3e-18 Score=171.23 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=135.9
Q ss_pred ccccEEeccCCCCCCCCCcccccccCcc-ccccCccCEEecCCCCCc---cccccccCCCCccEEecCCCCCcCccCccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPEN-VEKLIHLKYLNLSGLRIE---SLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
.+|++|++++ +.+..+|.. +..+++|++|++++|.++ ..|..+..+ +|++|++++|. +..+|..+
T Consensus 123 ~~L~~L~l~~---------n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~ 191 (332)
T 2ft3_A 123 SSLVELRIHD---------NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDL 191 (332)
T ss_dssp TTCCEEECCS---------SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSS
T ss_pred ccCCEEECCC---------CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccc
Confidence 6788889988 677777654 688889999999988876 345667777 88899998887 77788765
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
. ++|++|++++|......|..++.+++|++|+ +.+|.+.+..+. .+..++.|+.|++.+..- . ..+..
T Consensus 192 ~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~--L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l-~----~lp~~ 259 (332)
T 2ft3_A 192 P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLG--LGHNQIRMIENG---SLSFLPTLRELHLDNNKL-S----RVPAG 259 (332)
T ss_dssp C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB--CCSSCCCCCCTT---GGGGCTTCCEEECCSSCC-C----BCCTT
T ss_pred c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEE--CCCCcCCcCChh---HhhCCCCCCEEECCCCcC-e----ecChh
Confidence 4 6888899988885444456788888888888 666666433332 345566677777765321 1 34455
Q ss_pred cccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCC------CCCCCceEEEeecCCC---CCChhhhcccCCcEE
Q 043450 488 LYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQ------PPVNVEELWIVYYGGN---IFPKWLTLLTNLRDL 558 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~------~~~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L 558 (561)
+..+++|+.|++++|.+.... +..+. ..++|+.|++++|++. ..|..+..+++|+.|
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~--------------~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVG--------------VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCC--------------TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred hhcCccCCEEECCCCCCCccC--------------hhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 778888999999888764432 11222 2467888999888865 345667788888888
Q ss_pred EcC
Q 043450 559 NLD 561 (561)
Q Consensus 559 ~L~ 561 (561)
+|+
T Consensus 326 ~l~ 328 (332)
T 2ft3_A 326 QFG 328 (332)
T ss_dssp EC-
T ss_pred hcc
Confidence 874
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=5.5e-19 Score=194.92 Aligned_cols=247 Identities=12% Similarity=0.125 Sum_probs=181.0
Q ss_pred CCceEEEEeeecCCCC------------------Cccccc--ccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhh
Q 043450 241 GEKVRHIGLNFQRGAS------------------FPMSFF--EFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLY 300 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~------------------~~~~~~--~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (561)
..+++.+.+..+.... +|..+. ++++|+.|.+.++..
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l----------------------- 503 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN----------------------- 503 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-----------------------
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-----------------------
Confidence 4678999999999877 887776 999999999998721
Q ss_pred hccCCCCCCCCCCCCCCCcchhHHHHHHhccccccEEeccCCCCCCCCCccc-cc--ccCccccccC-------ccCEEe
Q 043450 301 LVSSPGLGIDDESPSNPSLNSSILRELFSKLACLRALVISQPSPIFRPDLNL-IR--EIPENVEKLI-------HLKYLN 370 (561)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~--~lp~~~~~l~-------~L~~L~ 370 (561)
...+|..+.++++|++|++++ |. +. .+|..++.+. +|++|+
T Consensus 504 --------------------~~~iP~~l~~L~~L~~L~Ls~---------N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 504 --------------------MTQLPDFLYDLPELQSLNIAC---------NRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp --------------------CCSCCGGGGGCSSCCEEECTT---------CTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred --------------------CccChHHHhCCCCCCEEECcC---------CCCcccccchHHHHhhhhcccccCCccEEE
Confidence 112334578999999999999 54 65 4888787776 999999
Q ss_pred cCCCCCccccc--cccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcC-CcccCceeecC
Q 043450 371 LSGLRIESLPE--TLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTS-LRTLEKFVVGG 447 (561)
Q Consensus 371 l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~-L~~L~~~~~~~ 447 (561)
+++|.++.+|. .++++++|++|++++|. +..+| .++.+++|+.|++++|. +..+|..++++++ |+.|+ +.+|
T Consensus 555 Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~--Ls~N 629 (876)
T 4ecn_A 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLG--FSHN 629 (876)
T ss_dssp CCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEE--CCSS
T ss_pred eeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEE--CcCC
Confidence 99999999999 99999999999999998 66999 89999999999999999 5599999999999 99998 6677
Q ss_pred ccCCCCccCchhhhccCCCCceEEcCCCCC-------------------------CCcchhhhcccccccccccEEEEee
Q 043450 448 GVDGNNTCRLESLKNLQLLRECRVEGLSNV-------------------------SHVDEAERLQLYNKKNLLRLGLQFG 502 (561)
Q Consensus 448 ~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~-------------------------~~~~~~~~~~l~~l~~L~~L~l~~~ 502 (561)
.+. ..+..+..+. .+.|+.|.+++..-. +.........+..+++|+.|+|++|
T Consensus 630 ~L~-~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTC-SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccc-cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence 654 3443333221 122444444332110 0001111111224455555555555
Q ss_pred cCCCCCcccccCCCcchHHHhhcCC--------CCCCCceEEEeecCCCCCChhhh--cccCCcEEEcC
Q 043450 503 RVADGEGEEGRRKNENDEQLLEALQ--------PPVNVEELWIVYYGGNIFPKWLT--LLTNLRDLNLD 561 (561)
Q Consensus 503 ~~~~~~~~~~~~~n~~~~~~~~~l~--------~~~~L~~L~l~~~~~~~lp~~~~--~l~~L~~L~L~ 561 (561)
.+. .+|..+. ++++|+.|++++|.+..+|..+. .+++|+.|+|+
T Consensus 708 ~L~---------------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 708 LMT---------------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp CCS---------------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECC
T ss_pred cCC---------------ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeC
Confidence 432 3343332 23489999999999999999887 99999999985
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=4.3e-19 Score=174.37 Aligned_cols=238 Identities=18% Similarity=0.124 Sum_probs=181.3
Q ss_pred EEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhHHH
Q 043450 246 HIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSILR 325 (561)
Q Consensus 246 ~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (561)
.+.......+.+|..+ .++++.|.+.++.. ..+.+
T Consensus 11 ~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l-------------------------------------------~~i~~ 45 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKL-------------------------------------------QSLPH 45 (306)
T ss_dssp EEECCSSCCSSCCSCC--CTTCCEEECCSSCC-------------------------------------------CCCCT
T ss_pred EEEcCCCCcccCCCCC--CCCCCEEECCCCcc-------------------------------------------CccCH
Confidence 4555555667777544 36899999988722 11223
Q ss_pred HHHhccccccEEeccCCCCCCCCCccccccc---CccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCc
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIREI---PENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
..+.++++|++|++++ +.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|++++|. +..
T Consensus 46 ~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~ 115 (306)
T 2z66_A 46 GVFDKLTQLTKLSLSS---------NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQ 115 (306)
T ss_dssp TTTTTCTTCSEEECCS---------SCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EES
T ss_pred hHhhccccCCEEECCC---------CccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccc
Confidence 3467899999999999 666544 667778999999999999999999999999999999999998 666
Q ss_pred cCc--ccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCC-CCccCchhhhccCCCCceEEcCCCCCCC
Q 043450 403 LPT--GIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDG-NNTCRLESLKNLQLLRECRVEGLSNVSH 479 (561)
Q Consensus 403 lp~--~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~-~~~~~~~~l~~L~~L~~l~i~~~~~~~~ 479 (561)
+|. .+..+++|++|++++|......|..++.+++|++|+ +.++.+.+ ..+ ..+..+++|+.|++++. .
T Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n----~ 186 (306)
T 2z66_A 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK--MAGNSFQENFLP---DIFTELRNLTFLDLSQC----Q 186 (306)
T ss_dssp STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE--CTTCEEGGGEEC---SCCTTCTTCCEEECTTS----C
T ss_pred cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE--CCCCccccccch---hHHhhCcCCCEEECCCC----C
Confidence 654 789999999999999996666777789999999998 66665532 123 33455667777777653 2
Q ss_pred cchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC-CChhhhcc-cCCcE
Q 043450 480 VDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI-FPKWLTLL-TNLRD 557 (561)
Q Consensus 480 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~~l-~~L~~ 557 (561)
.....+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.. .|..+..+ ++|+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSL--------------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBC--------------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCcc--------------ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 3344456788899999999998875432 12346778999999999999765 56677787 49999
Q ss_pred EEcC
Q 043450 558 LNLD 561 (561)
Q Consensus 558 L~L~ 561 (561)
|+|+
T Consensus 253 L~L~ 256 (306)
T 2z66_A 253 LNLT 256 (306)
T ss_dssp EECT
T ss_pred EEcc
Confidence 9985
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=180.34 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=66.0
Q ss_pred CCceEEEEeeecCCCCC-cccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 241 GEKVRHIGLNFQRGASF-PMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
...++.+.+..+....+ |..+..+++|++|.+.++..
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l------------------------------------------ 81 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL------------------------------------------ 81 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC------------------------------------------
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCce------------------------------------------
Confidence 46899999999998777 56889999999999998822
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcccccc--cCccccccCccCEEecCCCCCc
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIRE--IPENVEKLIHLKYLNLSGLRIE 377 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~l~ 377 (561)
.. ++.. .+.+|++|++++ |.+.. +|..++.+++|++|++++|.++
T Consensus 82 -~~-lp~~--~l~~L~~L~L~~---------N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 82 -VK-ISCH--PTVNLKHLDLSF---------NAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp -CE-EECC--CCCCCSEEECCS---------SCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred -ee-cCcc--ccCCccEEeccC---------CccccccchhhhccCCcceEEEecCcccc
Confidence 01 1111 689999999999 66765 5788999999999999998765
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=4e-18 Score=165.62 Aligned_cols=199 Identities=19% Similarity=0.207 Sum_probs=157.1
Q ss_pred cccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCccc-cccccCCCCccEEecCCCCCcCcc-Cccc
Q 043450 331 LACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRRCQDLREL-PTGI 407 (561)
Q Consensus 331 l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~~ 407 (561)
..+|++|++++ +.++.+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+
T Consensus 31 ~~~l~~L~l~~---------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHG---------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTT---------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeC---------CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 46899999999 7788776 4588999999999999999876 678999999999999999756666 6789
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
..+++|++|++++|......|..++++++|++|+ +.++.+....+.. +..+++|+.|++.+. .........
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~l~~n----~l~~~~~~~ 172 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY--LQDNALQALPDDT---FRDLGNLTHLFLHGN----RISSVPERA 172 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTT---TTTCTTCCEEECCSS----CCCEECTTT
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE--CCCCcccccCHhH---hccCCCccEEECCCC----cccccCHHH
Confidence 9999999999999995555567789999999998 6677664333322 455666777777653 222333445
Q ss_pred cccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCCh-hhhcccCCcEEEcC
Q 043450 488 LYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPK-WLTLLTNLRDLNLD 561 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~ 561 (561)
+.++++|+.|++++|.+. ...+..+..+++|+.|++++|.+..+|. .+..+++|+.|+|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVA--------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TTTCTTCCEEECCSSCCC--------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred hcCccccCEEECCCCccc--------------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 788999999999988743 2236678889999999999999888875 47899999999985
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.7e-19 Score=190.46 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=130.1
Q ss_pred HHHhccccccEEeccCCCCCCCCCcccccccCccc-cccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCcc
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIREIPENV-EKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~-~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
..|..+++|++|+|++ |.+..+|..+ +.+++|++|++++|.+..+| ..++++++|++|++++|. +..+
T Consensus 117 ~~~~~l~~L~~L~L~~---------n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 186 (597)
T 3oja_B 117 HVFQNVPLLTVLVLER---------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV 186 (597)
T ss_dssp TTTTTCTTCCEEECCS---------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBC
T ss_pred HHHcCCCCCCEEEeeC---------CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCc
Confidence 3456677777777777 6666776653 67777777777777777554 357777777777777776 4444
Q ss_pred CcccccCCC----------------------------------------CCeEEcCCCCCCccCcccccCCcCCcccCce
Q 043450 404 PTGIGKLKN----------------------------------------MRSLLNGDTSSLKYLPIGISRLTSLRTLEKF 443 (561)
Q Consensus 404 p~~~~~l~~----------------------------------------L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~ 443 (561)
| ++.+++ |+.|++++|. +.. |..++.+++|+.|+
T Consensus 187 ~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~-~~~l~~l~~L~~L~-- 260 (597)
T 3oja_B 187 D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTD-TAWLLNYPGLVEVD-- 260 (597)
T ss_dssp C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCC-CGGGGGCTTCSEEE--
T ss_pred C--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCC-ChhhccCCCCCEEE--
Confidence 3 222333 3333333333 112 24567778888887
Q ss_pred eecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHh
Q 043450 444 VVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLL 523 (561)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~ 523 (561)
+.+|.+.+..+ ..+..++.|+.|.+.+..- ...+..+..+++|+.|+|++|.+. .+|
T Consensus 261 Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l-----~~l~~~~~~l~~L~~L~Ls~N~l~---------------~i~ 317 (597)
T 3oja_B 261 LSYNELEKIMY---HPFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDLSHNHLL---------------HVE 317 (597)
T ss_dssp CCSSCCCEEES---GGGTTCSSCCEEECTTSCC-----CEEECSSSCCTTCCEEECCSSCCC---------------CCG
T ss_pred CCCCccCCCCH---HHhcCccCCCEEECCCCCC-----CCCCcccccCCCCcEEECCCCCCC---------------ccC
Confidence 66666543333 3455667777777766321 123455677899999999998753 345
Q ss_pred hcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 524 EALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 524 ~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
..+..+++|+.|++++|.+..+| +..+++|+.|+|+
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLS 353 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECC
T ss_pred cccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEee
Confidence 56677899999999999998876 6788999999985
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=4.1e-18 Score=183.89 Aligned_cols=269 Identities=19% Similarity=0.108 Sum_probs=158.6
Q ss_pred ceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcch
Q 043450 243 KVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNS 321 (561)
Q Consensus 243 ~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (561)
.++.+.+..+....++ ..+..+++|+.|.+.++... .++..+..... +....+.... ..
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~lp~~l~~l~~-----------L~~L~l~~n~-l~ 314 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--------ELPSGLVGLST-----------LKKLVLSANK-FE 314 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--------CCCSSCCSCTT-----------CCEEECTTCC-CS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--------CCChhhccccc-----------CCEEECccCC-cC
Confidence 7899999999887777 45889999999999988321 00000000000 0000000000 11
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCccccc-ccCc-cccccCccCEEecCCCCCccc---cccccCCCCccEEecCC
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLIR-EIPE-NVEKLIHLKYLNLSGLRIESL---PETLCELYNLQKLDIRR 396 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~-~~~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~ 396 (561)
...+..+..+++|++|++++ +.+. .+|. .++.+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~---------n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKG---------NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCS---------CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred cCchhhhhccCcCCEEECCC---------CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence 22233456666777777776 3332 4443 366677777777777776644 45667777777777777
Q ss_pred CCCcCccCcccccCCCCCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCC
Q 043450 397 CQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLS 475 (561)
Q Consensus 397 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~ 475 (561)
|......|..++.+++|++|++++|......|.. ++++++|++|+ +.++...+..+.. +..++.|+.|.+.+..
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN--LSHSLLDISSEQL---FDGLPALQHLNLQGNH 460 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE--CTTCCCBTTCTTT---TTTCTTCCEEECTTCB
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE--CCCCccCCcCHHH---HhCCCCCCEEECCCCC
Confidence 7643444556777777777777777644444433 66777777776 5555543333333 3344555556655432
Q ss_pred CCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC-CChhhhcccC
Q 043450 476 NVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI-FPKWLTLLTN 554 (561)
Q Consensus 476 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~~l~~ 554 (561)
- ..........+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+.. .|.++.++++
T Consensus 461 l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 461 F-PKGNIQKTNSLQTLGRLEILVLSFCDLS--------------SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp C-GGGEECSSCGGGGCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred C-CccccccchhhccCCCccEEECCCCccC--------------ccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 1 0000011234667777777877766532 2335677788889999998888764 4667788888
Q ss_pred CcEEEcC
Q 043450 555 LRDLNLD 561 (561)
Q Consensus 555 L~~L~L~ 561 (561)
| .|+|+
T Consensus 526 L-~L~L~ 531 (606)
T 3t6q_A 526 I-YLNLA 531 (606)
T ss_dssp C-EEECC
T ss_pred c-EEECc
Confidence 8 88774
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=4.2e-18 Score=181.49 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=82.3
Q ss_pred CCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 241 GEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
...++.+.+..+....++ ..+..+++|++|.+.++....... ..+.... ....+. +....
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-------~~~~~l~------~L~~L~-----Ls~n~- 85 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-------DAFYSLG------SLEHLD-----LSDNH- 85 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-------TTTTTCT------TCCEEE-----CTTSC-
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-------hhccccc------cCCEEE-----CCCCc-
Confidence 357888888888876664 567888889998888873210000 0000000 000000 00000
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcccccc--cCccccccCccCEEecCCCC-Ccccc-ccccCCCCccEEecC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIRE--IPENVEKLIHLKYLNLSGLR-IESLP-ETLCELYNLQKLDIR 395 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--lp~~~~~l~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~ 395 (561)
.....+..+.++++|++|++++ |.+.. .|..++.+++|++|++++|. +..+| ..++++++|++|+++
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMG---------NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTT---------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred cCccCHHHhccCCCCcEEECCC---------CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 0122333345555555555555 34442 23445555555555555555 44444 345555555555555
Q ss_pred CCCCcCccCcccccCCCCCeEEcCCCCCCccCcccc-cCCcCCcccC
Q 043450 396 RCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGI-SRLTSLRTLE 441 (561)
Q Consensus 396 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~ 441 (561)
+|......|..++.+++|++|+++.|. ...+|..+ +.+++|++|+
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEE
T ss_pred CCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEE
Confidence 555333345455544444444444443 22233221 2345555554
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=174.82 Aligned_cols=236 Identities=20% Similarity=0.262 Sum_probs=185.7
Q ss_pred EEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhHHH
Q 043450 246 HIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSILR 325 (561)
Q Consensus 246 ~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (561)
.+.........+|..+. ++++.|.+.++.. ....+
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i-------------------------------------------~~~~~ 81 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQI-------------------------------------------QIIKV 81 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCC-------------------------------------------CEECT
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcC-------------------------------------------CeeCH
Confidence 45555555677775443 6889999888722 11222
Q ss_pred HHHhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCcc
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~l 403 (561)
..|.++++|++|+|++ |.+..++ ..|..+++|++|+|++|.++.+|. .+..+++|++|++++|. +..+
T Consensus 82 ~~~~~l~~L~~L~Ls~---------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~ 151 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSR---------NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESI 151 (440)
T ss_dssp TTTSSCSSCCEEECCS---------SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEE
T ss_pred HHhhCCCCCCEEECCC---------CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-cccc
Confidence 3477899999999999 7777775 668899999999999999998876 58999999999999998 6777
Q ss_pred Cc-ccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcc
Q 043450 404 PT-GIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVD 481 (561)
Q Consensus 404 p~-~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~ 481 (561)
|. .+..+++|++|++++|..+..+|. .+.++++|++|+ +.+|.+. .+..+..+++|+.|++++. ...
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~--L~~n~l~-----~~~~~~~l~~L~~L~Ls~N----~l~ 220 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN--LAMCNLR-----EIPNLTPLIKLDELDLSGN----HLS 220 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE--CTTSCCS-----SCCCCTTCSSCCEEECTTS----CCC
T ss_pred CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec--CCCCcCc-----cccccCCCcccCEEECCCC----ccC
Confidence 65 788999999999999887888876 588999999998 6666653 2335677788888888764 334
Q ss_pred hhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChh-hhcccCCcEEEc
Q 043450 482 EAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKW-LTLLTNLRDLNL 560 (561)
Q Consensus 482 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L 560 (561)
...+..|.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.+|.. +..+++|+.|+|
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQV--------------IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCE--------------ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred ccChhhhccCccCCEEECCCCceeE--------------EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 4556778999999999999887532 2355678899999999999999888765 488999999998
Q ss_pred C
Q 043450 561 D 561 (561)
Q Consensus 561 ~ 561 (561)
+
T Consensus 287 ~ 287 (440)
T 3zyj_A 287 H 287 (440)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=2.1e-17 Score=172.27 Aligned_cols=189 Identities=23% Similarity=0.307 Sum_probs=106.0
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCC---------------------
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCEL--------------------- 386 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L--------------------- 386 (561)
+..+++|++|++++ +.+..+|. ++.+++|++|++++|.+..+|. ++.+
T Consensus 108 ~~~l~~L~~L~L~~---------n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l 176 (466)
T 1o6v_A 108 LANLTNLTGLTLFN---------NQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANL 176 (466)
T ss_dssp GTTCTTCCEEECCS---------SCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred hcCCCCCCEEECCC---------CCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccC
Confidence 66778888888887 56666665 7778888888888887766543 4444
Q ss_pred CCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCC
Q 043450 387 YNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLL 466 (561)
Q Consensus 387 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L 466 (561)
++|++|++++|. +..++ .+..+++|++|++++|. +..++. ++.+++|+.|+ +.++... .+..+..+++|
T Consensus 177 ~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~--l~~n~l~-----~~~~l~~l~~L 245 (466)
T 1o6v_A 177 TTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELS--LNGNQLK-----DIGTLASLTNL 245 (466)
T ss_dssp TTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEE--CCSSCCC-----CCGGGGGCTTC
T ss_pred CCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCCCCEEE--CCCCCcc-----cchhhhcCCCC
Confidence 444444444444 33332 24444445555554444 222221 44444555554 3333321 12334444555
Q ss_pred CceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCC
Q 043450 467 RECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFP 546 (561)
Q Consensus 467 ~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp 546 (561)
+.|++.+..- .. .. .+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+..+|
T Consensus 246 ~~L~l~~n~l-~~---~~--~~~~l~~L~~L~l~~n~l~~---------------~~~-~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 246 TDLDLANNQI-SN---LA--PLSGLTKLTELKLGANQISN---------------ISP-LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp SEEECCSSCC-CC---CG--GGTTCTTCSEEECCSSCCCC---------------CGG-GTTCTTCSEEECCSSCCSCCG
T ss_pred CEEECCCCcc-cc---ch--hhhcCCCCCEEECCCCccCc---------------ccc-ccCCCccCeEEcCCCcccCch
Confidence 5555544321 11 11 14555666666666555322 122 567788888888888877766
Q ss_pred hhhhcccCCcEEEcC
Q 043450 547 KWLTLLTNLRDLNLD 561 (561)
Q Consensus 547 ~~~~~l~~L~~L~L~ 561 (561)
. +..+++|+.|+|+
T Consensus 304 ~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 304 P-ISNLKNLTYLTLY 317 (466)
T ss_dssp G-GGGCTTCSEEECC
T ss_pred h-hcCCCCCCEEECc
Confidence 5 6788888888875
No 46
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.1e-17 Score=164.09 Aligned_cols=188 Identities=20% Similarity=0.187 Sum_probs=143.8
Q ss_pred hccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIG 408 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~ 408 (561)
..+.+|++|++++ +.+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .+.
T Consensus 38 ~~l~~L~~L~l~~---------~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~ 104 (308)
T 1h6u_A 38 ADLDGITTLSAFG---------TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIA 104 (308)
T ss_dssp HHHHTCCEEECTT---------SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGT
T ss_pred HHcCCcCEEEeeC---------CCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhc
Confidence 4578899999998 6677776 57888999999999999888877 8899999999999988 77776 588
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 488 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l 488 (561)
.+++|++|++++|. +..+|. ++.+++|++|+ +.++.+.+ +..+..++.|+.|.+.+..- .. .+. +
T Consensus 105 ~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~--l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l-~~----~~~-l 169 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLY--LDLNQITN-----ISPLAGLTNLQYLSIGNAQV-SD----LTP-L 169 (308)
T ss_dssp TCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEE--CCSSCCCC-----CGGGGGCTTCCEEECCSSCC-CC----CGG-G
T ss_pred CCCCCCEEECCCCC-CCCchh-hcCCCCCCEEE--CCCCccCc-----CccccCCCCccEEEccCCcC-CC----Chh-h
Confidence 89999999999988 566664 88889999987 56665532 22366777788888776432 22 111 7
Q ss_pred ccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 489 YNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 489 ~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
..+++|+.|++++|.+... + .+..+++|+.|++++|.+..+|. +..+++|+.|+|+
T Consensus 170 ~~l~~L~~L~l~~n~l~~~---------------~-~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDI---------------S-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225 (308)
T ss_dssp TTCTTCCEEECCSSCCCCC---------------G-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred cCCCCCCEEECCCCccCcC---------------h-hhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEcc
Confidence 7888999999988875432 1 15677888999998888887774 7888888888874
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=3.5e-17 Score=170.54 Aligned_cols=262 Identities=18% Similarity=0.243 Sum_probs=177.0
Q ss_pred cCCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 240 FGEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
....++.+.+..+....++. +..+++|+.|.+.++....... + ... .....+.+... .+
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-----~----~~l------~~L~~L~L~~n-----~l 124 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-----L----ANL------TNLTGLTLFNN-----QI 124 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-----G----TTC------TTCCEEECCSS-----CC
T ss_pred hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-----h----cCC------CCCCEEECCCC-----CC
Confidence 34567778887777777664 7777888888877763321110 0 000 00000011111 10
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcc------------cccccCccccccCccCEEecCCCCCccccccccCCC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLN------------LIREIPENVEKLIHLKYLNLSGLRIESLPETLCELY 387 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~ 387 (561)
. .. +. +..+++|++|++++|.....+... .+..++ .++.+++|++|++++|.++.++ .+..++
T Consensus 125 ~-~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~ 199 (466)
T 1o6v_A 125 T-DI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLT 199 (466)
T ss_dssp C-CC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred C-CC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh-hhccCC
Confidence 0 11 11 788999999999984321111100 011112 2677889999999999988875 488999
Q ss_pred CccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCC
Q 043450 388 NLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLR 467 (561)
Q Consensus 388 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~ 467 (561)
+|++|++++|. +..++. ++.+++|+.|++++|. +..++ .++.+++|++|+ +.++...+.. .+..++.|+
T Consensus 200 ~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~--l~~n~l~~~~-----~~~~l~~L~ 268 (466)
T 1o6v_A 200 NLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLD--LANNQISNLA-----PLSGLTKLT 268 (466)
T ss_dssp TCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEE--CCSSCCCCCG-----GGTTCTTCS
T ss_pred CCCEEEecCCc-cccccc-ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEE--CCCCccccch-----hhhcCCCCC
Confidence 99999999998 666654 7889999999999998 56664 588999999998 6666653322 266777788
Q ss_pred ceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCCh
Q 043450 468 ECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPK 547 (561)
Q Consensus 468 ~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~ 547 (561)
.|.+.+..- .. . +. +..+++|+.|++++|.+... + .+..+++|+.|++++|.+..++.
T Consensus 269 ~L~l~~n~l-~~---~-~~-~~~l~~L~~L~L~~n~l~~~---------------~-~~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 269 ELKLGANQI-SN---I-SP-LAGLTALTNLELNENQLEDI---------------S-PISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp EEECCSSCC-CC---C-GG-GTTCTTCSEEECCSSCCSCC---------------G-GGGGCTTCSEEECCSSCCSCCGG
T ss_pred EEECCCCcc-Cc---c-cc-ccCCCccCeEEcCCCcccCc---------------h-hhcCCCCCCEEECcCCcCCCchh
Confidence 888876432 21 1 11 77899999999998875432 1 26778999999999999887765
Q ss_pred hhhcccCCcEEEcC
Q 043450 548 WLTLLTNLRDLNLD 561 (561)
Q Consensus 548 ~~~~l~~L~~L~L~ 561 (561)
+..+++|+.|+++
T Consensus 327 -~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 327 -VSSLTKLQRLFFY 339 (466)
T ss_dssp -GGGCTTCCEEECC
T ss_pred -hccCccCCEeECC
Confidence 7899999999985
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.3e-17 Score=172.98 Aligned_cols=226 Identities=23% Similarity=0.255 Sum_probs=180.2
Q ss_pred cCCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+..++.+.+..+.+..++ ..+..+++|+.|.+.++..
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----------------------------------------- 111 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI----------------------------------------- 111 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-----------------------------------------
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc-----------------------------------------
Confidence 3568899999999887764 6788999999999998722
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCcc-ccccCccCEEecCCCCCccccc-cccCCCCccEEecCC
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPEN-VEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRR 396 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~ 396 (561)
..+.+..|.++.+|++|+|++ |.+..+|.. +..+++|++|++++|.++.+|. .+.++++|+.|++++
T Consensus 112 --~~~~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 112 --RQIEVGAFNGLASLNTLELFD---------NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp --CEECTTTTTTCTTCCEEECCS---------SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred --CCcChhhccCcccCCEEECCC---------CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 122334477899999999999 778888765 7889999999999999998875 688999999999999
Q ss_pred CCCcCccCc-ccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCC
Q 043450 397 CQDLRELPT-GIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLS 475 (561)
Q Consensus 397 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~ 475 (561)
|..+..+|. .+..+++|++|++++|. +..+| .+..+++|+.|+ +.+|.+.+..+ ..+..+++|+.|.+.+.
T Consensus 181 ~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~--Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n- 252 (452)
T 3zyi_A 181 LKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELE--MSGNHFPEIRP---GSFHGLSSLKKLWVMNS- 252 (452)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEE--CTTSCCSEECG---GGGTTCTTCCEEECTTS-
T ss_pred CCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEE--CcCCcCcccCc---ccccCccCCCEEEeCCC-
Confidence 888888876 58899999999999998 67776 588999999998 77777644333 34556667777777653
Q ss_pred CCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCC
Q 043450 476 NVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGG 542 (561)
Q Consensus 476 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~ 542 (561)
......+..+.++++|+.|+|++|.+... .++.+..+++|+.|++++|++
T Consensus 253 ---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 253 ---QVSLIERNAFDGLASLVELNLAHNNLSSL--------------PHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ---CCCEECTTTTTTCTTCCEEECCSSCCSCC--------------CTTSSTTCTTCCEEECCSSCE
T ss_pred ---cCceECHHHhcCCCCCCEEECCCCcCCcc--------------ChHHhccccCCCEEEccCCCc
Confidence 33444556788999999999999886432 234567889999999999984
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=2.9e-17 Score=170.10 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=132.2
Q ss_pred CCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 241 GEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
...++.+.+..+....+| .+..+++|++|.+.++....
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~----------------------------------------- 78 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT----------------------------------------- 78 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-----------------------------------------
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-----------------------------------------
Confidence 456788888888877776 67888899999888872200
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCc
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDL 400 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 400 (561)
++ +..+++|++|++++ |.++.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|. +
T Consensus 79 ---~~--~~~l~~L~~L~Ls~---------N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l 139 (457)
T 3bz5_A 79 ---LD--LSQNTNLTYLACDS---------NKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-L 139 (457)
T ss_dssp ---CC--CTTCTTCSEEECCS---------SCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-C
T ss_pred ---Ec--cccCCCCCEEECcC---------CCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-c
Confidence 01 45566777777777 5555554 666777777777777776664 6677777777777766 5
Q ss_pred CccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCc
Q 043450 401 RELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHV 480 (561)
Q Consensus 401 ~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~ 480 (561)
..+| ++.+++|+.|++++|..++.+ .++.+++|++|+ +.++.+.+. + +..++.|+.|.+.+..- ...
T Consensus 140 ~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~--ls~n~l~~l-~-----l~~l~~L~~L~l~~N~l-~~~ 206 (457)
T 3bz5_A 140 TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD--CSFNKITEL-D-----VSQNKLLNRLNCDTNNI-TKL 206 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE--CCSSCCCCC-C-----CTTCTTCCEEECCSSCC-SCC
T ss_pred ceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE--CCCCcccee-c-----cccCCCCCEEECcCCcC-Cee
Confidence 5554 566777777777777555555 356667777776 445544321 1 34445555555543221 111
Q ss_pred chhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEE
Q 043450 481 DEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDL 558 (561)
Q Consensus 481 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 558 (561)
.+..+++|+.|++++|.+.. +| +..+++|+.|++++|.+..+| +..+++|+.|
T Consensus 207 ------~l~~l~~L~~L~Ls~N~l~~---------------ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L 259 (457)
T 3bz5_A 207 ------DLNQNIQLTFLDCSSNKLTE---------------ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTL 259 (457)
T ss_dssp ------CCTTCTTCSEEECCSSCCSC---------------CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ------ccccCCCCCEEECcCCcccc---------------cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEE
Confidence 25566666667666665321 22 455566666666666655554 2334444433
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=1e-17 Score=178.98 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=90.0
Q ss_pred CCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 241 GEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
+..++.+.+..+.+..++ ..+..+++|++|.+.++..
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l------------------------------------------ 88 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI------------------------------------------ 88 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC------------------------------------------
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC------------------------------------------
Confidence 367888888888877776 5778888888888887721
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccc--cccccCCCCccEEecCCC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESL--PETLCELYNLQKLDIRRC 397 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~ 397 (561)
....+..|.++++|++|++++ |.++.+|.. .+++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 89 -~~~~~~~~~~l~~L~~L~Ls~---------N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 89 -RSLDFHVFLFNQDLEYLDVSH---------NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp -CEECTTTTTTCTTCCEEECTT---------SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred -CcCCHHHhCCCCCCCEEECCC---------CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 122234467788888888888 677777776 688888888888887765 367888888888888887
Q ss_pred CCcCccCcccccCCCC--CeEEcCCCCC
Q 043450 398 QDLRELPTGIGKLKNM--RSLLNGDTSS 423 (561)
Q Consensus 398 ~~~~~lp~~~~~l~~L--~~L~l~~~~~ 423 (561)
. +.. ..+..+++| +.|++++|..
T Consensus 157 ~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 157 K-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp B-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred c-ccc--CchhhhhhceeeEEEeecccc
Confidence 7 433 234455555 7777777664
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=9.3e-18 Score=179.68 Aligned_cols=146 Identities=19% Similarity=0.258 Sum_probs=110.5
Q ss_pred cCCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+..++.+.+..+....++ .++..+++|++|.+.++..
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----------------------------------------- 64 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----------------------------------------- 64 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-----------------------------------------
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC-----------------------------------------
Confidence 3567899999998887765 5788899999999988721
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCccccc-cccCCCCccEEecCC
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRR 396 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~ 396 (561)
....+..|.++.+|++|++++ +.+..+| ..|+.+++|++|++++|.++.+|. .++++++|++|++++
T Consensus 65 --~~i~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 65 --QTIEDGAYQSLSHLSTLILTG---------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (570)
T ss_dssp --CEECTTTTTTCTTCCEEECTT---------CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred --CccCcccccCchhCCEEeCcC---------CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC
Confidence 122233467788888888888 6676665 567888888888888888887765 588888888888888
Q ss_pred CCCcC-ccCcccccCCCCCeEEcCCCCCCccCcccccCCcCC
Q 043450 397 CQDLR-ELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSL 437 (561)
Q Consensus 397 ~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L 437 (561)
|.... .+|..++++++|++|++++|......|..++.+++|
T Consensus 134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred CccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 87333 368888888888888888887544445667777777
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=3e-17 Score=159.55 Aligned_cols=197 Identities=20% Similarity=0.170 Sum_probs=148.3
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccc-cccccCCCCccEEecCCCCCcCccCcc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
+..+.+++.+++++ +.++.+|..+. +++++|++++|.++.+ |..+..+++|++|++++|. +..+|..
T Consensus 6 ~~~l~~l~~l~~~~---------~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDK---------RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD 73 (290)
T ss_dssp EECSTTCCEEECTT---------SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC
T ss_pred ccccCCccEEECCC---------CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC
Confidence 45678888999988 77888887665 6889999999998866 4668889999999999987 7777664
Q ss_pred cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhc
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 486 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~ 486 (561)
+.+++|++|++++|. +..+|..+..+++|++|+ +.+|.+....+.. +..+++|+.|.+.+.. .....+.
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~--l~~N~l~~l~~~~---~~~l~~L~~L~L~~N~----l~~~~~~ 142 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD--VSFNRLTSLPLGA---LRGLGELQELYLKGNE----LKTLPPG 142 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE--CCSSCCCCCCSST---TTTCTTCCEEECTTSC----CCCCCTT
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE--CCCCcCcccCHHH---HcCCCCCCEEECCCCC----CCccChh
Confidence 788899999999887 678888888888999887 6667664433333 4455566666666532 2233344
Q ss_pred ccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 487 QLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 487 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
.+..+++|+.|+|+.|.+... .+..+..+++|+.|++++|.+..+|.++..+++|+.|+|+
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l--------------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTEL--------------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCC--------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred hcccccCCCEEECCCCcCCcc--------------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 567888999999988875432 1234567888999999999988899888888888888874
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=5.2e-18 Score=167.42 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=134.4
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCcc
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
.+..+..+++|++|++++ |.+...++ +..+++|++|++++|.++.+|. +++|++|++++|. +..+
T Consensus 50 ~~~~~~~l~~L~~L~Ls~---------n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~ 114 (317)
T 3o53_A 50 SAADLAPFTKLELLNLSS---------NVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN-ISRV 114 (317)
T ss_dssp CHHHHTTCTTCCEEECTT---------SCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC-CSEE
T ss_pred CHHHhhCCCcCCEEECCC---------CcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCc-cCCc
Confidence 445678889999999998 66766665 8888899999999998877663 3788888888887 6666
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhh-hccCCCCceEEcCCCCCCCcch
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESL-KNLQLLRECRVEGLSNVSHVDE 482 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l-~~L~~L~~l~i~~~~~~~~~~~ 482 (561)
|. ..+++|++|++++|......|..++.+++|++|+ +.+|.+.... ...+ ..++.|+.|.+++..- ..
T Consensus 115 ~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l-~~--- 183 (317)
T 3o53_A 115 SC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD--LKLNEIDTVN---FAELAASSDTLEHLNLQYNFI-YD--- 183 (317)
T ss_dssp EE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE--CTTSCCCEEE---GGGGGGGTTTCCEEECTTSCC-CE---
T ss_pred Cc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEE--CCCCCCCccc---HHHHhhccCcCCEEECCCCcC-cc---
Confidence 54 3467788888888874444455677888888887 5566553222 2222 3456677777765431 11
Q ss_pred hhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 483 AERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 483 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
. .....+++|+.|++++|.+. .++..+..+++|+.|++++|.+..+|..+..+++|+.|+|+
T Consensus 184 ~--~~~~~l~~L~~L~Ls~N~l~---------------~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 184 V--KGQVVFAKLKTLDLSSNKLA---------------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp E--ECCCCCTTCCEEECCSSCCC---------------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred c--ccccccccCCEEECCCCcCC---------------cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence 1 12334778888888877642 23444667778888888888877788777778888888774
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.5e-18 Score=179.73 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=104.8
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+++|++|++++ |.++.+|. .++|++|++++|.+..+|.. .+++|++|++++|......|..+
T Consensus 76 l~~l~~L~~L~Ls~---------N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~ 140 (487)
T 3oja_A 76 LESLSTLRTLDLNN---------NYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDE 140 (487)
T ss_dssp CTTCTTCCEEECCS---------SEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCG
T ss_pred cccCCCCCEEEecC---------CcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhh
Confidence 45566666666666 55555443 25666666666666655442 35666667776666333334556
Q ss_pred ccCCCCCeEEcCCCCCCccCccccc-CCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGIS-RLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 486 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~-~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~ 486 (561)
+.+++|++|++++|...+..|..+. .+++|++|+ +.+|.+.+. .....++.|+.|++++.. ... .+.
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~--Ls~N~l~~~-----~~~~~l~~L~~L~Ls~N~----l~~-~~~ 208 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN--LQYNFIYDV-----KGQVVFAKLKTLDLSSNK----LAF-MGP 208 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE--CTTSCCCEE-----ECCCCCTTCCEEECCSSC----CCE-ECG
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe--cCCCccccc-----cccccCCCCCEEECCCCC----CCC-CCH
Confidence 6666677777766664444555554 566666666 445544221 112234555555554422 111 222
Q ss_pred ccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC--CCChhhhcccCCcEE
Q 043450 487 QLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN--IFPKWLTLLTNLRDL 558 (561)
Q Consensus 487 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L 558 (561)
.+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|.++..+++|+.|
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~---------------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLV---------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp GGGGGTTCSEEECTTSCCC---------------EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred hHcCCCCccEEEecCCcCc---------------ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 3556666666666665531 24555566666666666666655 455566555555544
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=183.94 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=122.7
Q ss_pred EEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhHHHH
Q 043450 247 IGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSILRE 326 (561)
Q Consensus 247 l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (561)
.....++.+.+|. -.++++.|.++++.. ....+.
T Consensus 9 ~dcs~~~L~~vP~---lp~~l~~LdLs~N~i-------------------------------------------~~i~~~ 42 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ---VLNTTERLLLSFNYI-------------------------------------------RTVTAS 42 (844)
T ss_dssp EEESCCCSSCCCS---SCTTCCEEEEESCCC-------------------------------------------CEECSS
T ss_pred EEccCCCCCCCCC---CCCCcCEEECCCCcC-------------------------------------------CccChh
Confidence 3344555677774 458999999998822 122233
Q ss_pred HHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCccc-cccccCCCCccEEecCCCCCcCccC
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
.+.++.+|++|++++| +.+..+ |..|+.+++|++|+|++|.+..+ |..++++++|++|++++|.....+|
T Consensus 43 ~~~~l~~L~~LdLs~n--------~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQ--------YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114 (844)
T ss_dssp SCSSCCSCSEEEECTT--------CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCS
T ss_pred HCcccccCeEEeCCCC--------CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccc
Confidence 4778999999999994 356666 77899999999999999999865 7889999999999999998555566
Q ss_pred cc--cccCCCCCeEEcCCCCCCccCc-ccccCCcCCcccCceeecCccCCCCccCchhh
Q 043450 405 TG--IGKLKNMRSLLNGDTSSLKYLP-IGISRLTSLRTLEKFVVGGGVDGNNTCRLESL 460 (561)
Q Consensus 405 ~~--~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l 460 (561)
.. ++++++|++|++++|...+..| ..++++++|++|+ +.+|.+.+..+..+..+
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~--Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID--FSSNQIFLVCEHELEPL 171 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE--EESSCCCCCCSGGGHHH
T ss_pred cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE--CCCCcCCeeCHHHcccc
Confidence 65 8999999999999998544433 5789999999998 77777765555555554
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=2.3e-18 Score=169.60 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=153.7
Q ss_pred hccccccEEeccCCCCCCCCCccccc-ccCccc--cccCccCEEecCCCCCccccccccCC-----CCccEEecCCCCCc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIR-EIPENV--EKLIHLKYLNLSGLRIESLPETLCEL-----YNLQKLDIRRCQDL 400 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~--~~l~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~ 400 (561)
..+.+|++|++++ +.+. .+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|. +
T Consensus 92 ~~l~~L~~L~L~~---------n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l 161 (312)
T 1wwl_A 92 LGISGLQELTLEN---------LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-S 161 (312)
T ss_dssp HTTSCCCEEEEEE---------EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-C
T ss_pred cCcCCccEEEccC---------CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-C
Confidence 3689999999999 6676 678876 89999999999999999888888887 999999999999 5
Q ss_pred CccC-cccccCCCCCeEEcCCCCCCcc--Ccccc--cCCcCCcccCceeecCccCCCCccCc-hhhhccCCCCceEEcCC
Q 043450 401 RELP-TGIGKLKNMRSLLNGDTSSLKY--LPIGI--SRLTSLRTLEKFVVGGGVDGNNTCRL-ESLKNLQLLRECRVEGL 474 (561)
Q Consensus 401 ~~lp-~~~~~l~~L~~L~l~~~~~~~~--lp~~i--~~l~~L~~L~~~~~~~~~~~~~~~~~-~~l~~L~~L~~l~i~~~ 474 (561)
..+| ..++.+++|++|++++|...+. +|..+ +.+++|++|+ +.+|.+... +... .-...+++|+.|++++.
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~--L~~N~l~~~-~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA--LRNAGMETP-SGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEE--CTTSCCCCH-HHHHHHHHHTTCCCSEEECTTS
T ss_pred ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEE--CCCCcCcch-HHHHHHHHhcCCCCCEEECCCC
Confidence 5554 7899999999999999986554 34455 8999999998 666665211 1111 12245678888888764
Q ss_pred CCCCCcchhh-hcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhccc
Q 043450 475 SNVSHVDEAE-RLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLT 553 (561)
Q Consensus 475 ~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~ 553 (561)
.- .... ...+..+++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|. +..++
T Consensus 239 ~l----~~~~~~~~~~~l~~L~~L~Ls~N~l~---------------~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~ 296 (312)
T 1wwl_A 239 SL----RDAAGAPSCDWPSQLNSLNLSFTGLK---------------QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELP 296 (312)
T ss_dssp CC----CSSCCCSCCCCCTTCCEEECTTSCCS---------------SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSC
T ss_pred cC----CcccchhhhhhcCCCCEEECCCCccC---------------hhhhhcc--CCceEEECCCCCCCCChh-HhhCC
Confidence 32 1212 234566799999999988753 3455554 889999999999998987 88999
Q ss_pred CCcEEEcC
Q 043450 554 NLRDLNLD 561 (561)
Q Consensus 554 ~L~~L~L~ 561 (561)
+|+.|+|+
T Consensus 297 ~L~~L~L~ 304 (312)
T 1wwl_A 297 QVGNLSLK 304 (312)
T ss_dssp EEEEEECT
T ss_pred CCCEEecc
Confidence 99999985
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=2e-17 Score=160.66 Aligned_cols=182 Identities=22% Similarity=0.220 Sum_probs=106.6
Q ss_pred HhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCC-Cccc-cccccCCCCccEEecCCCCCcCccC
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLR-IESL-PETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
+..+.+|++|++++ +.++.+ |..++.+++|++|++++|. +..+ |..+..+++|++|++++|......|
T Consensus 52 ~~~~~~L~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 122 (285)
T 1ozn_A 52 FRACRNLTILWLHS---------NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122 (285)
T ss_dssp TTTCTTCCEEECCS---------SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cccCCCCCEEECCC---------CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH
Confidence 45666777777776 555555 5556667777777777775 6655 4556677777777777766333334
Q ss_pred cccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 405 TGIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 405 ~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
..+..+++|++|++++|. +..+|. .++.+++|++|+ +.++.+....+. .+..++.|+.|.+.+. .....
T Consensus 123 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~---~~~~l~~L~~L~l~~n----~l~~~ 192 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLF--LHGNRISSVPER---AFRGLHSLDRLLLHQN----RVAHV 192 (285)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE--CCSSCCCEECTT---TTTTCTTCCEEECCSS----CCCEE
T ss_pred hHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEE--CCCCcccccCHH---HhcCccccCEEECCCC----ccccc
Confidence 556667777777777766 334443 366677777776 445544221111 2334455555555442 22233
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCC
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGG 542 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~ 542 (561)
.+..+..+++|+.|++++|.+... .++.+..+++|+.|++++|++
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSAL--------------PTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCC--------------CHHHHTTCTTCCEEECCSSCE
T ss_pred CHhHccCcccccEeeCCCCcCCcC--------------CHHHcccCcccCEEeccCCCc
Confidence 345566677777777776664322 123455667777777777764
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=3.9e-17 Score=157.79 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=117.1
Q ss_pred ccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccC-cccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELP-TGIG 408 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~~~ 408 (561)
.+|++|++++ +.++.++. .+..+++|++|++++|.++.+|. .+.++++|++|++++|. +..++ ..+.
T Consensus 28 ~~l~~L~ls~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSF---------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS 97 (276)
T ss_dssp TTCCEEECTT---------CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT
T ss_pred CCccEEECCC---------CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhc
Confidence 3577777777 56666654 56777777777777777776553 56777777777777776 44443 5677
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 488 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l 488 (561)
++++|++|++++|......+..++++++|++|+ +.+|.+.... ....+..+++|+.|++.+.. .....+..+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~--l~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~ 169 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELN--VAHNLIQSFK--LPEYFSNLTNLEHLDLSSNK----IQSIYCTDL 169 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE--CCSSCCCCCC--CCGGGGGCTTCCEEECCSSC----CCEECGGGG
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEE--CcCCccceec--CchhhccCCCCCEEECCCCC----CCcCCHHHh
Confidence 777777777777763333333567777777776 5555542211 12344555566666665432 122223344
Q ss_pred ccccccc----cEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh-hcccCCcEEEcC
Q 043450 489 YNKKNLL----RLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL-TLLTNLRDLNLD 561 (561)
Q Consensus 489 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~L~ 561 (561)
..+.+|+ .|++++|.+. .++.......+|+.|++++|.++.+|..+ .++++|+.|+|+
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~---------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMN---------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCC---------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred hhhhhccccceeeecCCCccc---------------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 4555555 5666665532 22223333346777777777776666554 667777777764
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.3e-16 Score=153.55 Aligned_cols=87 Identities=32% Similarity=0.520 Sum_probs=38.1
Q ss_pred ccccccCccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCcc-cccCCCCCeEEcCCCCCCccCc
Q 043450 351 NLIREIPENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPTG-IGKLKNMRSLLNGDTSSLKYLP 428 (561)
Q Consensus 351 ~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~lp 428 (561)
+.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..+|.. +..+++|++|++++|. +..+|
T Consensus 26 ~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~ 101 (270)
T 2o6q_A 26 KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALP 101 (270)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCC
T ss_pred CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCC
Confidence 44444444332 344445555544444432 34444555555554444 3344332 2444445555554444 22332
Q ss_pred c-cccCCcCCcccC
Q 043450 429 I-GISRLTSLRTLE 441 (561)
Q Consensus 429 ~-~i~~l~~L~~L~ 441 (561)
. .++.+++|++|+
T Consensus 102 ~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 102 IGVFDQLVNLAELR 115 (270)
T ss_dssp TTTTTTCSSCCEEE
T ss_pred HhHcccccCCCEEE
Confidence 2 234444444444
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=8.8e-17 Score=166.45 Aligned_cols=182 Identities=18% Similarity=0.136 Sum_probs=149.1
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+++|++|++++ +.++.+| ++.+++|++|++++|.++.+| ++++++|++|++++|. +..+| +
T Consensus 60 l~~l~~L~~L~Ls~---------n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~ 123 (457)
T 3bz5_A 60 IEKLTGLTKLICTS---------NNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--V 123 (457)
T ss_dssp GGGCTTCSEEECCS---------SCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--C
T ss_pred hcccCCCCEEEccC---------CcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--C
Confidence 67899999999999 7788776 889999999999999999885 8999999999999998 77776 8
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
+.+++|++|++++|. +..+| ++++++|++|+ +..+...+.. .+..++.|+.|++++..- .. . .
T Consensus 124 ~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~--l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l-~~----l--~ 186 (457)
T 3bz5_A 124 SQNPLLTYLNCARNT-LTEID--VSHNTQLTELD--CHLNKKITKL-----DVTPQTQLTTLDCSFNKI-TE----L--D 186 (457)
T ss_dssp TTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEE--CTTCSCCCCC-----CCTTCTTCCEEECCSSCC-CC----C--C
T ss_pred CCCCcCCEEECCCCc-cceec--cccCCcCCEEE--CCCCCccccc-----ccccCCcCCEEECCCCcc-ce----e--c
Confidence 999999999999998 55564 88999999998 5555443222 355677777888766431 22 1 2
Q ss_pred cccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 488 LYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
+..+++|+.|++++|.+... .+..+++|+.|++++|.+..+| +..+++|+.|+|+
T Consensus 187 l~~l~~L~~L~l~~N~l~~~-----------------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL-----------------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCS 241 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-----------------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECC
T ss_pred cccCCCCCEEECcCCcCCee-----------------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEee
Confidence 77889999999998875431 3778899999999999999988 7899999999985
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=4.4e-18 Score=177.81 Aligned_cols=194 Identities=14% Similarity=0.122 Sum_probs=153.8
Q ss_pred HHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccC
Q 043450 325 RELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 325 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
+..+..+++|++|+|++ |.+...++ ++.+++|++|++++|.++.+|.. ++|++|++++|. +..+|
T Consensus 51 ~~~~~~l~~L~~L~Ls~---------N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~-l~~~~ 115 (487)
T 3oja_A 51 AADLAPFTKLELLNLSS---------NVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNN-ISRVS 115 (487)
T ss_dssp GGGGTTCTTCCEEECTT---------SCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSC-CCCEE
T ss_pred HHHHhCCCCCCEEEeeC---------CCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCc-CCCCC
Confidence 34578899999999999 67776665 89999999999999999887743 899999999998 66665
Q ss_pred cccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhh-ccCCCCceEEcCCCCCCCcchh
Q 043450 405 TGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLK-NLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 405 ~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~-~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
. ..+++|+.|++++|...+..|..++++++|++|+ +.+|.+.+..+ ..+. .++.|+.|++++..- . ..
T Consensus 116 ~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~---~~l~~~l~~L~~L~Ls~N~l-~---~~ 184 (487)
T 3oja_A 116 C--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD--LKLNEIDTVNF---AELAASSDTLEHLNLQYNFI-Y---DV 184 (487)
T ss_dssp E--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE--CTTSCCCEEEG---GGGGGGTTTCCEEECTTSCC-C---EE
T ss_pred c--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE--CCCCCCCCcCh---HHHhhhCCcccEEecCCCcc-c---cc
Confidence 4 3578999999999996666677899999999998 67777643333 3333 567788888876432 1 11
Q ss_pred hhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 484 ERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 484 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
..+..+++|+.|+|++|.+. .++..+..+++|+.|++++|.+..+|.++..+++|+.|+|+
T Consensus 185 --~~~~~l~~L~~L~Ls~N~l~---------------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSNKLA---------------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp --ECCCCCTTCCEEECCSSCCC---------------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred --cccccCCCCCEEECCCCCCC---------------CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence 23446899999999988743 34556778899999999999999999999999999999985
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=1.5e-16 Score=169.84 Aligned_cols=234 Identities=23% Similarity=0.179 Sum_probs=148.1
Q ss_pred EEEeecCcceeeeeecCCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccC
Q 043450 225 LWVEINGTKELVINFFGEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSS 304 (561)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (561)
+.........++.. ...+++.+.+..+.++.+|. .+++|++|.+.++..
T Consensus 45 L~ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l--------------------------- 93 (622)
T 3g06_A 45 LNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL--------------------------- 93 (622)
T ss_dssp EECCSSCCSCCCSC-CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC---------------------------
T ss_pred EEecCCCcCccChh-hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC---------------------------
Confidence 34444444333322 23677888888887777774 567888888877721
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccccccc
Q 043450 305 PGLGIDDESPSNPSLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLC 384 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~ 384 (561)
.. ++. .+.+|++|++++ |.+..+|. .+++|++|++++|.++.+|..
T Consensus 94 ------------~~-----lp~---~l~~L~~L~Ls~---------N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~-- 139 (622)
T 3g06_A 94 ------------TS-----LPV---LPPGLLELSIFS---------NPLTHLPA---LPSGLCKLWIFGNQLTSLPVL-- 139 (622)
T ss_dssp ------------SC-----CCC---CCTTCCEEEECS---------CCCCCCCC---CCTTCCEEECCSSCCSCCCCC--
T ss_pred ------------Cc-----CCC---CCCCCCEEECcC---------CcCCCCCC---CCCCcCEEECCCCCCCcCCCC--
Confidence 00 111 567888889988 67777776 467888888888888888764
Q ss_pred CCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhcc-
Q 043450 385 ELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNL- 463 (561)
Q Consensus 385 ~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L- 463 (561)
+++|++|++++|. +..+|.. +.+|+.|++++|. +..+| ..+++|+.|+ +.+|.+.+ .+..+.+|..|
T Consensus 140 -l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~--Ls~N~l~~-l~~~~~~L~~L~ 207 (622)
T 3g06_A 140 -PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLP---MLPSGLQELS--VSDNQLAS-LPTLPSELYKLW 207 (622)
T ss_dssp -CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCC---CCCTTCCEEE--CCSSCCSC-CCCCCTTCCEEE
T ss_pred -CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCC-CCCCc---ccCCCCcEEE--CCCCCCCC-CCCccchhhEEE
Confidence 4788888888887 6677653 3456666666665 44555 3345666665 44444322 11222222221
Q ss_pred -------------CCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCC
Q 043450 464 -------------QLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPV 530 (561)
Q Consensus 464 -------------~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~ 530 (561)
++|+.|.+++.. +.. ++ ..+++|+.|++++|.+. .+|. .++
T Consensus 208 L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~----lp---~~l~~L~~L~Ls~N~L~---------------~lp~---~~~ 261 (622)
T 3g06_A 208 AYNNRLTSLPALPSGLKELIVSGNR-LTS----LP---VLPSELKELMVSGNRLT---------------SLPM---LPS 261 (622)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSC-CSC----CC---CCCTTCCEEECCSSCCS---------------CCCC---CCT
T ss_pred CcCCcccccCCCCCCCCEEEccCCc-cCc----CC---CCCCcCcEEECCCCCCC---------------cCCc---ccc
Confidence 344445544321 111 11 34466777777766643 2333 568
Q ss_pred CCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 531 NVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 531 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
+|+.|++++|.++.+|.++.++++|+.|+|+
T Consensus 262 ~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred cCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 8999999999999999999999999999985
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1e-17 Score=168.09 Aligned_cols=258 Identities=15% Similarity=0.149 Sum_probs=175.7
Q ss_pred CceEEEEeeecCCCCCcc-cccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcc
Q 043450 242 EKVRHIGLNFQRGASFPM-SFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLN 320 (561)
Q Consensus 242 ~~~~~l~l~~~~~~~~~~-~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (561)
..++.+.+..+..+.++. .+.++++|++|.+.++......... +.... ....+. +.... .
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~------~L~~L~-----Ls~n~-l 112 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-------FSSLG------SLEHLD-----LSYNY-L 112 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-------TTTCT------TCCEEE-----CCSSC-C
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-------cCCCC------CCCEEE-----CCCCc-C
Confidence 466777777776666653 5667777777777666221100000 00000 000000 00011 1
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCcccccccCc--cccccCccCEEecCCCC-Cccc-cccccCCCCccEEecCC
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPE--NVEKLIHLKYLNLSGLR-IESL-PETLCELYNLQKLDIRR 396 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~-l~~l-p~~i~~L~~L~~L~l~~ 396 (561)
....+..+.++++|++|++++ |.+..+|. .+..+++|++|++++|. +..+ |..++++++|++|++++
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~---------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLG---------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTT---------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CcCCHhHhCCCccCCEEECCC---------CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 234455688999999999999 77888887 68899999999999995 7766 46799999999999999
Q ss_pred CCCcCccCcccccCCCCCeEEcCCCCCCccCcccc-cCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCC
Q 043450 397 CQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGI-SRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLS 475 (561)
Q Consensus 397 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~ 475 (561)
|......|..++.+++|++|++++|. +..+|..+ +.+++|+.|+ +.++.+.+.....+........++.+.+..+.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~--L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLE--LRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEE--EESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEE--CCCCccccccccccccccccchhhcccccccc
Confidence 99444558899999999999999998 57777654 5689999998 77887765555555555556667777776654
Q ss_pred CCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhc-CCCCCCCceEEEeecCCCCC
Q 043450 476 NVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEA-LQPPVNVEELWIVYYGGNIF 545 (561)
Q Consensus 476 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~-l~~~~~L~~L~l~~~~~~~l 545 (561)
-........+..+..+++|+.|++++|.+. .+|.. +..+++|++|++++|++..-
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~---------------~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLK---------------SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCC---------------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCC---------------ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 222222345566788999999999998754 34444 47899999999999997643
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=3.5e-18 Score=168.69 Aligned_cols=232 Identities=11% Similarity=0.075 Sum_probs=177.2
Q ss_pred CCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCc
Q 043450 241 GEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSL 319 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (561)
..+++.+.+..+....++ ..+..+++|+.|.+.++..
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------------------------------------ 70 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL------------------------------------------ 70 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC------------------------------------------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC------------------------------------------
Confidence 346888999988887776 5788999999999998822
Q ss_pred chhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCC
Q 043450 320 NSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQD 399 (561)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 399 (561)
. ...+ +..+++|++|++++ |.++.+|. .++|++|++++|.++.+|.. .+++|++|++++|.
T Consensus 71 ~-~~~~--~~~l~~L~~L~Ls~---------n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~- 131 (317)
T 3o53_A 71 Y-ETLD--LESLSTLRTLDLNN---------NYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK- 131 (317)
T ss_dssp E-EEEE--ETTCTTCCEEECCS---------SEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-
T ss_pred C-cchh--hhhcCCCCEEECcC---------CccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-
Confidence 0 1111 67899999999999 77877653 48999999999999987654 47899999999998
Q ss_pred cCcc-CcccccCCCCCeEEcCCCCCCccCcccc-cCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCC
Q 043450 400 LREL-PTGIGKLKNMRSLLNGDTSSLKYLPIGI-SRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNV 477 (561)
Q Consensus 400 ~~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~ 477 (561)
+..+ |..++.+++|++|++++|......|..+ +.+++|++|+ +.+|.+... .....++.|+.|++++..
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~--L~~N~l~~~-----~~~~~l~~L~~L~Ls~N~-- 202 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN--LQYNFIYDV-----KGQVVFAKLKTLDLSSNK-- 202 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE--CTTSCCCEE-----ECCCCCTTCCEEECCSSC--
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE--CCCCcCccc-----ccccccccCCEEECCCCc--
Confidence 5555 5578899999999999998555455555 4789999998 666665322 223346777888877643
Q ss_pred CCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC--CCChhhhcccCC
Q 043450 478 SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN--IFPKWLTLLTNL 555 (561)
Q Consensus 478 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L 555 (561)
.. ..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|.++..+++|
T Consensus 203 --l~-~l~~~~~~l~~L~~L~L~~N~l~---------------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 203 --LA-FMGPEFQSAAGVTWISLRNNKLV---------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp --CC-EECGGGGGGTTCSEEECTTSCCC---------------EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred --CC-cchhhhcccCcccEEECcCCccc---------------chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 12 23334788999999999988742 45777888999999999999987 678888888888
Q ss_pred cEEEc
Q 043450 556 RDLNL 560 (561)
Q Consensus 556 ~~L~L 560 (561)
+.|++
T Consensus 265 ~~l~l 269 (317)
T 3o53_A 265 QTVAK 269 (317)
T ss_dssp HHHHH
T ss_pred eEEEC
Confidence 77654
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=8.8e-17 Score=171.66 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=100.0
Q ss_pred cCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCcc---CcccccCCcCCcccCceeecCccCCCCccCchhh
Q 043450 384 CELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKY---LPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESL 460 (561)
Q Consensus 384 ~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~---lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l 460 (561)
+.+++|++|++++|.....+|..++.+++|+.|++++|. +.. +|..++++++|++|+ +.+|.+.+..+.. .+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~--l~~N~l~~~~~~~--~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD--VSLNSLNSHAYDR--TC 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE--CTTSCCBSCCSSC--CC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE--CCCCcCCCccChh--hh
Confidence 566777777777777444467777777777777777776 443 334567777777776 5555553322211 23
Q ss_pred hccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeec
Q 043450 461 KNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYY 540 (561)
Q Consensus 461 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~ 540 (561)
..++.|+.|.+++.. ..+..+..+. ++|+.|++++|.+ ..+|..+..+++|+.|++++|
T Consensus 425 ~~l~~L~~L~l~~n~----l~~~~~~~l~--~~L~~L~L~~N~l---------------~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 425 AWAESILVLNLSSNM----LTGSVFRCLP--PKVKVLDLHNNRI---------------MSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CCCTTCCEEECCSSC----CCGGGGSSCC--TTCSEEECCSSCC---------------CCCCTTTTSSCCCSEEECCSS
T ss_pred cCcccCCEEECCCCC----CCcchhhhhc--CcCCEEECCCCcC---------------cccChhhcCCCCCCEEECCCC
Confidence 344555556655432 2222222222 5788888887763 245666778899999999999
Q ss_pred CCCCCChh-hhcccCCcEEEcC
Q 043450 541 GGNIFPKW-LTLLTNLRDLNLD 561 (561)
Q Consensus 541 ~~~~lp~~-~~~l~~L~~L~L~ 561 (561)
.++.+|.. +..+++|+.|+|+
T Consensus 484 ~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 484 QLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCCCCCTTSTTTCTTCCCEECC
T ss_pred CCCCCCHHHHhcCCCCCEEEec
Confidence 99999987 7899999999875
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=9.1e-17 Score=157.65 Aligned_cols=178 Identities=20% Similarity=0.290 Sum_probs=142.6
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+++|++|++++ +.+..++. +..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|. +
T Consensus 59 ~~~l~~L~~L~L~~---------n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l 125 (308)
T 1h6u_A 59 VQYLNNLIGLELKD---------NQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-L 125 (308)
T ss_dssp GGGCTTCCEEECCS---------SCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-G
T ss_pred hhccCCCCEEEccC---------CcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCchh-h
Confidence 67799999999999 77888887 899999999999999998886 68999999999999998 777775 8
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
..+++|++|++++|. +..+|. ++.+++|+.|+ +.++.+.. +..+..+++|+.|.+.+..- ... . .
T Consensus 126 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~--l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l-~~~---~--~ 190 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLS--IGNAQVSD-----LTPLANLSKLTTLKADDNKI-SDI---S--P 190 (308)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEE--CCSSCCCC-----CGGGTTCTTCCEEECCSSCC-CCC---G--G
T ss_pred cCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEE--ccCCcCCC-----ChhhcCCCCCCEEECCCCcc-CcC---h--h
Confidence 999999999999998 566665 88999999998 66666532 22367778888888876432 221 1 2
Q ss_pred cccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhh
Q 043450 488 LYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWL 549 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~ 549 (561)
+..+++|+.|++++|.+... + .+..+++|+.|++++|++...|..+
T Consensus 191 l~~l~~L~~L~L~~N~l~~~---------------~-~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDV---------------S-PLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBC---------------G-GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred hcCCCCCCEEEccCCccCcc---------------c-cccCCCCCCEEEccCCeeecCCeee
Confidence 78889999999998875432 2 3678899999999999987766543
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=7.9e-17 Score=176.22 Aligned_cols=239 Identities=17% Similarity=0.157 Sum_probs=170.0
Q ss_pred EEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhHHHH
Q 043450 247 IGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSILRE 326 (561)
Q Consensus 247 l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (561)
+.........+|..+. +++++|.+.++.. ....+.
T Consensus 9 ~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l-------------------------------------------~~~~~~ 43 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP--TNITVLNLTHNQL-------------------------------------------RRLPAA 43 (680)
T ss_dssp EECCSSCCSSCCSCSC--TTCSEEECCSSCC-------------------------------------------CCCCGG
T ss_pred eECCCCCccccccccC--CCCcEEECCCCCC-------------------------------------------CCcCHH
Confidence 4455555677775443 7899999998722 122334
Q ss_pred HHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccC
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
.+.++++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|+ .++++++|++|++++|. +..+|
T Consensus 44 ~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~ 113 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGF---------NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIK 113 (680)
T ss_dssp GGGGGTTCSEEECCS---------SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC
T ss_pred HHhCCCcCcEEECCC---------CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccC
Confidence 478899999999999 667666 6678999999999999999999987 59999999999999998 56665
Q ss_pred -cccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchh
Q 043450 405 -TGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEA 483 (561)
Q Consensus 405 -~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~ 483 (561)
..++++++|++|++++|...+..|..++++++|++|+ +.++.+.+..+..+. ...++.|+.|++.+.. ....
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~----l~~~ 186 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL--LSNNKIQALKSEELD-IFANSSLKKLELSSNQ----IKEF 186 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE--CCSSCCCCBCHHHHG-GGTTCEESEEECTTCC----CCCB
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEE--ccCCcccccCHHHhh-ccccccccEEECCCCc----cccc
Confidence 6799999999999999996666777889999999998 666665332222221 1234566777776532 1222
Q ss_pred hhcccccccc---------------------------cccEEEEeecCCCCCcccccCCCcchHHHhhcCCCC--CCCce
Q 043450 484 ERLQLYNKKN---------------------------LLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPP--VNVEE 534 (561)
Q Consensus 484 ~~~~l~~l~~---------------------------L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~--~~L~~ 534 (561)
.+..+..+.+ |+.|++++|.+ ....+..+..+ ++|+.
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l--------------~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL--------------STTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC--------------CEECTTTTGGGGGSCCCE
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc--------------cccChhHhhccCcCCCCE
Confidence 2333444444 45555554432 22234455554 45999
Q ss_pred EEEeecCCCCC-ChhhhcccCCcEEEcC
Q 043450 535 LWIVYYGGNIF-PKWLTLLTNLRDLNLD 561 (561)
Q Consensus 535 L~l~~~~~~~l-p~~~~~l~~L~~L~L~ 561 (561)
|++++|.+..+ |.++..+++|+.|+|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCCcCccCcccccCcccccEeeCC
Confidence 99999997764 5678999999999985
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2.1e-16 Score=152.59 Aligned_cols=186 Identities=23% Similarity=0.272 Sum_probs=140.1
Q ss_pred HHhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCccC
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
.+.++.+|++|++++ +.+..++. .+..+++|++|++++|.++.++ ..+.++++|++|++++|. +..++
T Consensus 47 ~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 116 (276)
T 2z62_A 47 SFFSFPELQVLDLSR---------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLE 116 (276)
T ss_dssp TTTTCTTCSEEECTT---------CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCST
T ss_pred HhccccCCcEEECCC---------CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccC
Confidence 467789999999999 66777754 6788999999999999998765 568999999999999998 55555
Q ss_pred c-ccccCCCCCeEEcCCCCCCc-cCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCC-ceEEcCCCCCCCcc
Q 043450 405 T-GIGKLKNMRSLLNGDTSSLK-YLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLR-ECRVEGLSNVSHVD 481 (561)
Q Consensus 405 ~-~~~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~-~l~i~~~~~~~~~~ 481 (561)
. .++.+++|++|++++|.... .+|..++++++|++|+ +.+|.+.+..+..+..+.+|+.|. .+++++.. ..
T Consensus 117 ~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~----l~ 190 (276)
T 2z62_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD--LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP----MN 190 (276)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE--CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC----CC
T ss_pred chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE--CCCCCCCcCCHHHhhhhhhccccceeeecCCCc----cc
Confidence 4 78899999999999998433 3688899999999998 677776555555677777777665 45655422 22
Q ss_pred hhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 482 EAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 482 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
...+ ......+|+.|++++|.+... .+..+..+++|+.|++++|++.
T Consensus 191 ~~~~-~~~~~~~L~~L~L~~n~l~~~--------------~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 191 FIQP-GAFKEIRLKELALDTNQLKSV--------------PDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EECT-TSSCSCCEEEEECCSSCCSCC--------------CTTTTTTCCSCCEEECCSSCBC
T ss_pred ccCc-cccCCCcccEEECCCCceeec--------------CHhHhcccccccEEEccCCccc
Confidence 2222 233344899999998875432 1334678899999999999865
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=4.8e-17 Score=174.12 Aligned_cols=178 Identities=16% Similarity=0.090 Sum_probs=87.8
Q ss_pred cccCccCEEecCCCCCccc---cccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCc-ccccCCcC
Q 043450 361 EKLIHLKYLNLSGLRIESL---PETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLP-IGISRLTS 436 (561)
Q Consensus 361 ~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~ 436 (561)
..+++|++|++++|.++.. |..+..+++|++|++++|. +..+|..+..+++|++|++++|......| ..++++++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 4455566666666655433 4455556666666666655 44444445556666666666555333222 23555556
Q ss_pred CcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCC
Q 043450 437 LRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKN 516 (561)
Q Consensus 437 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n 516 (561)
|++|+ +.++...+..+. .+..++.|+.|.+.+..- .....+..+..+++|+.|++++|.+.
T Consensus 423 L~~L~--l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l---~~~~~p~~~~~l~~L~~L~l~~n~l~----------- 483 (570)
T 2z63_A 423 LIYLD--ISHTHTRVAFNG---IFNGLSSLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLE----------- 483 (570)
T ss_dssp CCEEE--CTTSCCEECCTT---TTTTCTTCCEEECTTCEE---GGGEECSCCTTCTTCCEEECTTSCCC-----------
T ss_pred CCEEe--CcCCcccccchh---hhhcCCcCcEEECcCCcC---ccccchhhhhcccCCCEEECCCCccc-----------
Confidence 66555 334433222222 223334444444433210 01223344555566666666655421
Q ss_pred cchHHHhhcCCCCCCCceEEEeecCCCCCCh-hhhcccCCcEEEcC
Q 043450 517 ENDEQLLEALQPPVNVEELWIVYYGGNIFPK-WLTLLTNLRDLNLD 561 (561)
Q Consensus 517 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~ 561 (561)
...|..+..+++|+.|++++|.+..+|. .+.++++|+.|+|+
T Consensus 484 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 484 ---QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp ---EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ---cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 1224445555666666666666554443 34556666666553
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=1.9e-16 Score=168.69 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=78.1
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcC--cc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLR--EL 403 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~l 403 (561)
+.++++|++|++++ +.+..++ ..++.+++|++|++++|.++.+|+. ++++++|++|++++|. +. ..
T Consensus 46 ~~~l~~L~~L~Ls~---------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 115 (549)
T 2z81_A 46 LRACANLQVLILKS---------SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGV 115 (549)
T ss_dssp TSSCTTCCEEECTT---------SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCS
T ss_pred hhcCCcccEEECCC---------CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccch
Confidence 56677777777777 5565554 5567777777777777777766544 7777777777777776 44 34
Q ss_pred CcccccCCCCCeEEcCCCCCCccCc-ccccCCcCCcccCceeecCccCCCCcc
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLP-IGISRLTSLRTLEKFVVGGGVDGNNTC 455 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~ 455 (561)
|..++++++|++|++++|...+.+| ..++++++|++|+ +.++.+.+..+.
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~ 166 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE--IKALSLRNYQSQ 166 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE--EEETTCCEECTT
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeee--ccCCcccccChh
Confidence 5667777777777777776556665 3577777777776 555555433333
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=152.94 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=146.0
Q ss_pred ccccccEEeccCCCCCCCCCccccc-ccCccc--cccCccCEEecCCCCCcc-cc----ccccCCCCccEEecCCCCCcC
Q 043450 330 KLACLRALVISQPSPIFRPDLNLIR-EIPENV--EKLIHLKYLNLSGLRIES-LP----ETLCELYNLQKLDIRRCQDLR 401 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~--~~l~~L~~L~l~~~~l~~-lp----~~i~~L~~L~~L~l~~~~~~~ 401 (561)
.+.+|++|++++ +.+. ..|..+ +.+++|++|++++|.+.. .| ..+..+++|++|++++|....
T Consensus 89 ~~~~L~~L~l~~---------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 89 AYSRLKELTLED---------LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HHSCCCEEEEES---------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred ccCceeEEEeeC---------CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence 456799999999 5554 556666 889999999999999874 23 345679999999999999544
Q ss_pred ccCcccccCCCCCeEEcCCCCCCcc--Cc--ccccCCcCCcccCceeecCccCCCCccCchh-hhccCCCCceEEcCCCC
Q 043450 402 ELPTGIGKLKNMRSLLNGDTSSLKY--LP--IGISRLTSLRTLEKFVVGGGVDGNNTCRLES-LKNLQLLRECRVEGLSN 476 (561)
Q Consensus 402 ~lp~~~~~l~~L~~L~l~~~~~~~~--lp--~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l~i~~~~~ 476 (561)
..|..++.+++|++|++++|...+. +| ..++.+++|++|+ +.+|.+.. .+..... +..++.|+.|++++..
T Consensus 160 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~--Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~- 235 (310)
T 4glp_A 160 FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA--LRNTGMET-PTGVCAALAAAGVQPHSLDLSHNS- 235 (310)
T ss_dssp CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB--CCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSC-
T ss_pred hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE--CCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCC-
Confidence 4557899999999999999985432 32 3347899999998 66666521 1111111 3667888888887643
Q ss_pred CCCcchhhhcccccc---cccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhccc
Q 043450 477 VSHVDEAERLQLYNK---KNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLT 553 (561)
Q Consensus 477 ~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~ 553 (561)
.....+..+..+ ++|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|. +..++
T Consensus 236 ---l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~---------------~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~ 294 (310)
T 4glp_A 236 ---LRATVNPSAPRCMWSSALNSLNLSFAGLE---------------QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELP 294 (310)
T ss_dssp ---CCCCCCSCCSSCCCCTTCCCEECCSSCCC---------------SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCC
T ss_pred ---CCccchhhHHhccCcCcCCEEECCCCCCC---------------chhhhhc--CCCCEEECCCCcCCCCch-hhhCC
Confidence 223333344444 79999999998854 3455553 799999999999988876 68899
Q ss_pred CCcEEEcC
Q 043450 554 NLRDLNLD 561 (561)
Q Consensus 554 ~L~~L~L~ 561 (561)
+|+.|+|+
T Consensus 295 ~L~~L~L~ 302 (310)
T 4glp_A 295 EVDNLTLD 302 (310)
T ss_dssp CCSCEECS
T ss_pred CccEEECc
Confidence 99999985
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=2.5e-17 Score=167.33 Aligned_cols=218 Identities=18% Similarity=0.174 Sum_probs=130.6
Q ss_pred HHHhccccccEEeccCCCCCCCCCcccc-cccCcc-------ccccCccCEEecCCCCCcc-----ccccccCCCCccEE
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLI-REIPEN-------VEKLIHLKYLNLSGLRIES-----LPETLCELYNLQKL 392 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~lp~~-------~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L 392 (561)
..+..+++|++|+|++|.. +.+ ..+|.. +..+++|++|+|++|.+.. +|..+..+++|++|
T Consensus 54 ~~l~~~~~L~~L~Ls~~~~------~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 127 (386)
T 2ca6_A 54 ENIASKKDLEIAEFSDIFT------GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 127 (386)
T ss_dssp HTTTTCTTCCEEECCSCCT------TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEE
T ss_pred HHHHhCCCccEEeCccccc------CccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEE
Confidence 3355677888888877421 111 122333 3567788888888887764 67777778888888
Q ss_pred ecCCCCCcC----ccCcccccC---------CCCCeEEcCCCCCC-ccCc---ccccCCcCCcccCceeecCccCCCC-c
Q 043450 393 DIRRCQDLR----ELPTGIGKL---------KNMRSLLNGDTSSL-KYLP---IGISRLTSLRTLEKFVVGGGVDGNN-T 454 (561)
Q Consensus 393 ~l~~~~~~~----~lp~~~~~l---------~~L~~L~l~~~~~~-~~lp---~~i~~l~~L~~L~~~~~~~~~~~~~-~ 454 (561)
++++|.... .++..+..+ ++|++|++++|... ..+| ..+..+++|++|+ +.+|.+.... .
T Consensus 128 ~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~--L~~n~l~~~g~~ 205 (386)
T 2ca6_A 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK--MVQNGIRPEGIE 205 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE--CCSSCCCHHHHH
T ss_pred ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE--CcCCCCCHhHHH
Confidence 888877321 223333344 78888888887743 3444 3566777788776 4455441000 0
Q ss_pred cCch-hhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcC--CCCCC
Q 043450 455 CRLE-SLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEAL--QPPVN 531 (561)
Q Consensus 455 ~~~~-~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l--~~~~~ 531 (561)
..+. .+..++.|+.|.+++..-.......++..+..+++|+.|+|++|.+... ....++..+ .++++
T Consensus 206 ~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~----------~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR----------GAAAVVDAFSKLENIG 275 (386)
T ss_dssp HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH----------HHHHHHHHHHTCSSCC
T ss_pred HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh----------hHHHHHHHHhhccCCC
Confidence 0122 4556666777777653210000134455667778888888887764321 123355665 34778
Q ss_pred CceEEEeecCCCC-----CChhh-hcccCCcEEEcC
Q 043450 532 VEELWIVYYGGNI-----FPKWL-TLLTNLRDLNLD 561 (561)
Q Consensus 532 L~~L~l~~~~~~~-----lp~~~-~~l~~L~~L~L~ 561 (561)
|+.|++++|.+.. +|..+ .++++|+.|+|+
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 8888888888765 77777 567888888764
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.8e-16 Score=152.78 Aligned_cols=184 Identities=21% Similarity=0.227 Sum_probs=128.6
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc-
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT- 405 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~- 405 (561)
+..+++|++|++++ +.+..++ .++.+++|++|++++|.++.+|+. ++++++|++|++++|. +..+|.
T Consensus 59 l~~l~~L~~L~l~~---------n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 127 (272)
T 3rfs_A 59 IQYLPNVRYLALGG---------NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDG 127 (272)
T ss_dssp GGGCTTCCEEECTT---------SCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT
T ss_pred cccCCCCcEEECCC---------CCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHH
Confidence 56788899999998 6666654 578889999999999998877654 6889999999999988 556654
Q ss_pred ccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhh
Q 043450 406 GIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAE 484 (561)
Q Consensus 406 ~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~ 484 (561)
.++.+++|++|++++|. +..+|. .++.+++|++|+ +.+|.+.+..+.. +..++.|+.|.+.+.. .....
T Consensus 128 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~---~~~l~~L~~L~L~~N~----l~~~~ 197 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELD--LSYNQLQSLPEGV---FDKLTQLKDLRLYQNQ----LKSVP 197 (272)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTT---TTTCTTCCEEECCSSC----CSCCC
T ss_pred HhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEE--CCCCCcCccCHHH---hcCCccCCEEECCCCc----CCccC
Confidence 47888999999999987 455554 468889999987 6666664333322 3455566666665532 22333
Q ss_pred hcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhccc
Q 043450 485 RLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLLT 553 (561)
Q Consensus 485 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~ 553 (561)
+..+..+++|+.|+++.|.+ .+.+++|+.|++.+|.+. .+|.+++.++
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~---------------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPW---------------------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCB---------------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHhCCcCCCEEEccCCCc---------------------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 44567788888888887753 134556777776666643 4666665443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=4.1e-16 Score=151.48 Aligned_cols=176 Identities=20% Similarity=0.109 Sum_probs=134.6
Q ss_pred ccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccC
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKL 410 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l 410 (561)
..+++|++++ |.+..+ |..+..+++|++|++++|.++.+|.. +.+++|++|++++|. +..+|..+..+
T Consensus 31 ~~l~~L~L~~---------N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l 99 (290)
T 1p9a_G 31 KDTTILHLSE---------NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTL 99 (290)
T ss_dssp TTCCEEECTT---------SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTC
T ss_pred CCCCEEEcCC---------CcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccC
Confidence 5789999998 667766 46688899999999999999888765 788999999999988 78899888899
Q ss_pred CCCCeEEcCCCCCCccCc-ccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccc
Q 043450 411 KNMRSLLNGDTSSLKYLP-IGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLY 489 (561)
Q Consensus 411 ~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~ 489 (561)
++|++|++++|. +..+| ..++.+++|++|+ +.+|.+....+.. +..+++|+.|.+.+. .........+.
T Consensus 100 ~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~--L~~N~l~~~~~~~---~~~l~~L~~L~L~~N----~l~~l~~~~~~ 169 (290)
T 1p9a_G 100 PALTVLDVSFNR-LTSLPLGALRGLGELQELY--LKGNELKTLPPGL---LTPTPKLEKLSLANN----NLTELPAGLLN 169 (290)
T ss_dssp TTCCEEECCSSC-CCCCCSSTTTTCTTCCEEE--CTTSCCCCCCTTT---TTTCTTCCEEECTTS----CCSCCCTTTTT
T ss_pred CCCCEEECCCCc-CcccCHHHHcCCCCCCEEE--CCCCCCCccChhh---cccccCCCEEECCCC----cCCccCHHHhc
Confidence 999999999998 55555 5688999999997 6677664433333 345566666776553 22233334567
Q ss_pred cccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 490 NKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 490 ~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
++++|+.|+++.|.+. .+|..+...++|+.|++++|++.
T Consensus 170 ~l~~L~~L~L~~N~l~---------------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY---------------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECCSSCCC---------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCCCEEECCCCcCC---------------ccChhhcccccCCeEEeCCCCcc
Confidence 8899999999988743 35666777788999999999864
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=2.8e-16 Score=148.25 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=145.8
Q ss_pred ccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCC-Cccccc-cccCCCCccEEecCC-CCCcCccCc-c
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLR-IESLPE-TLCELYNLQKLDIRR-CQDLRELPT-G 406 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~l~~-~~~~~~lp~-~ 406 (561)
.+|++|++++ +.++.+|. .++.+++|++|++++|. ++.+|+ .+.++++|++|++++ |. ++.+|. .
T Consensus 31 ~~l~~L~l~~---------n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIE---------THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDA 100 (239)
T ss_dssp TTCCEEEEES---------CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTS
T ss_pred CcccEEEEeC---------CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHH
Confidence 3799999999 77888876 68899999999999997 988875 689999999999998 66 777764 6
Q ss_pred cccCCCCCeEEcCCCCCCccCcccccCCcCCc---ccCceeecC-ccCCCCccCchhhhccCCCC-ceEEcCCCCCCCcc
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLR---TLEKFVVGG-GVDGNNTCRLESLKNLQLLR-ECRVEGLSNVSHVD 481 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~---~L~~~~~~~-~~~~~~~~~~~~l~~L~~L~-~l~i~~~~~~~~~~ 481 (561)
+..+++|++|++++|. +..+|. ++.+++|+ +|+ +.+| .+....+.. +..++.|+ .+.+.+.. ..
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~--l~~N~~l~~i~~~~---~~~l~~L~~~L~l~~n~----l~ 169 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILE--ITDNPYMTSIPVNA---FQGLCNETLTLKLYNNG----FT 169 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEE--EESCTTCCEECTTT---TTTTBSSEEEEECCSCC----CC
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEE--CCCCcchhhcCccc---ccchhcceeEEEcCCCC----Cc
Confidence 8899999999999998 666887 88888888 887 6666 543322222 44556666 66665422 22
Q ss_pred hhhhcccccccccccEEEEeec-CCCCCcccccCCCcchHHHhhcCCCC-CCCceEEEeecCCCCCChhhhcccCCcEEE
Q 043450 482 EAERLQLYNKKNLLRLGLQFGR-VADGEGEEGRRKNENDEQLLEALQPP-VNVEELWIVYYGGNIFPKWLTLLTNLRDLN 559 (561)
Q Consensus 482 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~n~~~~~~~~~l~~~-~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 559 (561)
......+.. .+|+.|++++|. +.. ..+..+..+ ++|+.|++++|.+..+|.. .+++|+.|+
T Consensus 170 ~i~~~~~~~-~~L~~L~L~~n~~l~~--------------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~ 232 (239)
T 2xwt_C 170 SVQGYAFNG-TKLDAVYLNKNKYLTV--------------IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELI 232 (239)
T ss_dssp EECTTTTTT-CEEEEEECTTCTTCCE--------------ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEE
T ss_pred ccCHhhcCC-CCCCEEEcCCCCCccc--------------CCHHHhhccccCCcEEECCCCccccCChh--HhccCceee
Confidence 222223344 789999999873 422 123457778 9999999999999999976 788999998
Q ss_pred cC
Q 043450 560 LD 561 (561)
Q Consensus 560 L~ 561 (561)
++
T Consensus 233 l~ 234 (239)
T 2xwt_C 233 AR 234 (239)
T ss_dssp CT
T ss_pred cc
Confidence 74
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1e-16 Score=157.66 Aligned_cols=199 Identities=18% Similarity=0.243 Sum_probs=150.6
Q ss_pred ccEEeccCCCCCCCCCcccccc--cCcccc-------ccCccCEEecCCCCCc-cccccc--cCCCCccEEecCCCCCcC
Q 043450 334 LRALVISQPSPIFRPDLNLIRE--IPENVE-------KLIHLKYLNLSGLRIE-SLPETL--CELYNLQKLDIRRCQDLR 401 (561)
Q Consensus 334 L~~L~l~~~~~~~~~~~~~~~~--lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~i--~~L~~L~~L~l~~~~~~~ 401 (561)
|++|++++ +.+.. +|..+. .+++|++|++++|.++ .+|..+ +.+++|++|++++|. +.
T Consensus 65 L~~L~L~~---------n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 134 (312)
T 1wwl_A 65 IKSLSLKR---------LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WA 134 (312)
T ss_dssp HHHCCCCE---------EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CS
T ss_pred Hhhccccc---------ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Cc
Confidence 88888888 66643 566555 6899999999999998 788876 899999999999998 66
Q ss_pred ccCcccccC-----CCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhh--hccCCCCceEEcCC
Q 043450 402 ELPTGIGKL-----KNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESL--KNLQLLRECRVEGL 474 (561)
Q Consensus 402 ~lp~~~~~l-----~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l--~~L~~L~~l~i~~~ 474 (561)
.+|..++.+ ++|++|++++|...+..|..++++++|++|+ +.+|...+..+ .+..+ ..+++|+.|.+.+.
T Consensus 135 ~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~-~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD--LSDNPELGERG-LISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE--CCSCTTCHHHH-HHHHSCTTSCTTCCEEECTTS
T ss_pred chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE--CCCCCcCcchH-HHHHHHhccCCCCCEEECCCC
Confidence 668888887 9999999999995555557899999999998 66665422100 12223 66778888888765
Q ss_pred CCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccC
Q 043450 475 SNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTN 554 (561)
Q Consensus 475 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~ 554 (561)
. +..........+.++++|+.|++++|.+.... ....+..+++|+.|++++|.++.+|.++. ++
T Consensus 212 ~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 212 G-METPSGVCSALAAARVQLQGLDLSHNSLRDAA-------------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp C-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred c-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc-------------chhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 3 22222333344567899999999998864421 01344567899999999999999999877 89
Q ss_pred CcEEEcC
Q 043450 555 LRDLNLD 561 (561)
Q Consensus 555 L~~L~L~ 561 (561)
|+.|+|+
T Consensus 276 L~~L~Ls 282 (312)
T 1wwl_A 276 LSVLDLS 282 (312)
T ss_dssp EEEEECC
T ss_pred ceEEECC
Confidence 9999985
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=2.9e-15 Score=145.58 Aligned_cols=175 Identities=21% Similarity=0.258 Sum_probs=141.3
Q ss_pred hccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIG 408 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~ 408 (561)
..+.+|++|++++ +.+..+|. ++.+++|++|++++|.++.+|+ +.++++|++|++++|. +..+|. ++
T Consensus 43 ~~l~~L~~L~l~~---------~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~ 109 (291)
T 1h6t_A 43 NELNSIDQIIANN---------SDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LK 109 (291)
T ss_dssp HHHHTCCEEECTT---------SCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GT
T ss_pred hhcCcccEEEccC---------CCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hc
Confidence 4688899999999 67777765 8889999999999999998887 9999999999999998 777765 89
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 488 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l 488 (561)
.+++|++|++++|. +..++ .++.+++|+.|+ +.+|.+.. +..+..+++|+.|++.+..- .. ..+ +
T Consensus 110 ~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~--l~~n~l~~-----~~~l~~l~~L~~L~L~~N~l-~~---~~~--l 174 (291)
T 1h6t_A 110 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLY--LGNNKITD-----ITVLSRLTKLDTLSLEDNQI-SD---IVP--L 174 (291)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEE--CCSSCCCC-----CGGGGGCTTCSEEECCSSCC-CC---CGG--G
T ss_pred cCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEE--ccCCcCCc-----chhhccCCCCCEEEccCCcc-cc---chh--h
Confidence 99999999999998 56664 688999999998 66666532 35677888888888876432 22 222 7
Q ss_pred ccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCCh
Q 043450 489 YNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPK 547 (561)
Q Consensus 489 ~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~ 547 (561)
..+++|+.|++++|.+.. ++ .+..+++|+.|++++|++...|.
T Consensus 175 ~~l~~L~~L~L~~N~i~~---------------l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD---------------LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TTCTTCCEEECCSSCCCB---------------CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred cCCCccCEEECCCCcCCC---------------Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 889999999999887532 22 47788999999999998766554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=4.6e-15 Score=142.68 Aligned_cols=179 Identities=20% Similarity=0.199 Sum_probs=136.3
Q ss_pred ccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc-ccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT-GIG 408 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~~~ 408 (561)
.+|+.|++++ +.+..+|. .+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+.
T Consensus 37 ~~l~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDLQS---------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFD 106 (270)
T ss_dssp TTCSEEECCS---------SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCCEEECcC---------CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcc
Confidence 5699999999 77888765 688999999999999999988876 4789999999999998 667765 568
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 488 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l 488 (561)
.+++|++|++++|......|..++.+++|++|+ +.++.+....+.. +..++.|+.|.+.+.. .....+..+
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~----l~~~~~~~~ 177 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS--LGYNELQSLPKGV---FDKLTSLKELRLYNNQ----LKRVPEGAF 177 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTT---TTTCTTCCEEECCSSC----CSCCCTTTT
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEE--CCCCcCCccCHhH---ccCCcccceeEecCCc----CcEeChhHh
Confidence 899999999999985444445579999999998 6677664333322 4556667777776532 223333457
Q ss_pred ccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 489 YNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 489 ~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
.++++|+.|++++|.+... .+..+..+++|+.|++++|++.
T Consensus 178 ~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRV--------------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCSCC--------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCcCEEECCCCcCCcC--------------CHHHhccccCCCEEEecCCCee
Confidence 7889999999998875432 1234677889999999999853
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=3e-15 Score=144.12 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=137.9
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCc-c
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPT-G 406 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~ 406 (561)
...+.+|+.|++++ +.+..++. ++.+++|++|++++|.++.++ .++.+++|++|++++|. +..+|. .
T Consensus 37 ~~~l~~L~~L~l~~---------~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~ 104 (272)
T 3rfs_A 37 QNELNSIDQIIANN---------SDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGV 104 (272)
T ss_dssp HHHHTTCCEEECTT---------SCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccccceeeeeeCC---------CCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhH
Confidence 35688999999999 66777654 888999999999999998875 78999999999999998 666655 5
Q ss_pred cccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhc
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERL 486 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~ 486 (561)
++.+++|++|++++|......|..++.+++|++|+ +.+|.+.+..+.. +..++.|+.|.+.+.. .....+.
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~ 175 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN--LAHNQLQSLPKGV---FDKLTNLTELDLSYNQ----LQSLPEG 175 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTT---TTTCTTCCEEECCSSC----CCCCCTT
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE--CCCCccCccCHHH---hccCccCCEEECCCCC----cCccCHH
Confidence 78999999999999994443344479999999998 6677664333322 4556667777776542 2233344
Q ss_pred ccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 487 QLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 487 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
.+..+++|+.|+++.|.+... .+..+..+++|+.|++++|++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSV--------------PDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCC--------------CTTTTTTCTTCCEEECCSSCBC
T ss_pred HhcCCccCCEEECCCCcCCcc--------------CHHHHhCCcCCCEEEccCCCcc
Confidence 567889999999998875432 2345678899999999999854
No 80
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=4.7e-15 Score=156.37 Aligned_cols=175 Identities=15% Similarity=0.084 Sum_probs=136.8
Q ss_pred ccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccCC
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLK 411 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~ 411 (561)
.+|++|++++ +.++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|. +..+|. +..
T Consensus 59 ~~L~~L~Ls~---------n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~-- 120 (571)
T 3cvr_A 59 NQFSELQLNR---------LNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA-- 120 (571)
T ss_dssp TTCSEEECCS---------SCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--
T ss_pred CCccEEEeCC---------CCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--
Confidence 3899999999 77888988774 79999999999999999 568999999999998 777998 665
Q ss_pred CCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccc
Q 043450 412 NMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 491 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l 491 (561)
+|++|++++|. +..+|. .+++|++|+ +.+|.+.+ .+. .+++|+.|.+++..- .. ++. +.
T Consensus 121 ~L~~L~Ls~N~-l~~lp~---~l~~L~~L~--Ls~N~l~~-lp~------~l~~L~~L~Ls~N~L-~~----lp~-l~-- 179 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTMLPE---LPALLEYIN--ADNNQLTM-LPE------LPTSLEVLSVRNNQL-TF----LPE-LP-- 179 (571)
T ss_dssp TCCEEECCSSC-CSCCCC---CCTTCCEEE--CCSSCCSC-CCC------CCTTCCEEECCSSCC-SC----CCC-CC--
T ss_pred CCCEEECCCCc-CCCCCC---cCccccEEe--CCCCccCc-CCC------cCCCcCEEECCCCCC-CC----cch-hh--
Confidence 99999999998 666887 689999998 66776643 222 356777777765431 21 233 43
Q ss_pred cccccEEEEeecCCCCCcccccCCCcchHHHhhcCC-----CCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 492 KNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQ-----PPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 492 ~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
++|+.|+|++|.+... |. +. .++.|+.|++++|.++.+|.++.++++|+.|+|+
T Consensus 180 ~~L~~L~Ls~N~L~~l---------------p~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 180 ESLEALDVSTNLLESL---------------PA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp TTCCEEECCSSCCSSC---------------CC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred CCCCEEECcCCCCCch---------------hh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 8999999999986532 32 22 2233499999999999999999889999999985
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=5.8e-16 Score=154.05 Aligned_cols=206 Identities=16% Similarity=0.141 Sum_probs=137.7
Q ss_pred HHhcc--ccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCc-c-ccccccCCCCccEEecCCCCCcCc
Q 043450 327 LFSKL--ACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIE-S-LPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 327 ~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~-lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
.+..+ .++++|++++ +.+...+..+..+++|++|++++|.+. . +|..+..+++|++|++++|.....
T Consensus 63 ~~~~~~~~~l~~L~l~~---------n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~ 133 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPR---------SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 133 (336)
T ss_dssp HHHHHHHTTCSEEECTT---------CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH
T ss_pred HHHhhhhccceEEEcCC---------ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH
Confidence 34455 7788888888 667666666777888888888888876 2 777788888888888888874446
Q ss_pred cCcccccCCCCCeEEcCCCCCCc--cCcccccCCcCCcccCceeecC-ccCCCCccCchhhhccC-CCCceEEcCCC-CC
Q 043450 403 LPTGIGKLKNMRSLLNGDTSSLK--YLPIGISRLTSLRTLEKFVVGG-GVDGNNTCRLESLKNLQ-LLRECRVEGLS-NV 477 (561)
Q Consensus 403 lp~~~~~l~~L~~L~l~~~~~~~--~lp~~i~~l~~L~~L~~~~~~~-~~~~~~~~~~~~l~~L~-~L~~l~i~~~~-~~ 477 (561)
.|..++.+++|++|++++|..+. .+|..++++++|++|+ +.++ .+.. ......+..++ +|+.|.+.++. .+
T Consensus 134 ~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~--l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN--LSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE--CCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc--CCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccC
Confidence 67778888888888888884344 3666677788888887 4444 3311 00123355666 77777776643 11
Q ss_pred CCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCCh---hhhcccC
Q 043450 478 SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPK---WLTLLTN 554 (561)
Q Consensus 478 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~---~~~~l~~ 554 (561)
. ....+..+..+++|+.|++++|.. .....+..+..+++|+.|++++|.. ..|. .+.++++
T Consensus 210 ~--~~~l~~~~~~~~~L~~L~l~~~~~-------------l~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 210 Q--KSDLSTLVRRCPNLVHLDLSDSVM-------------LKNDCFQEFFQLNYLQHLSLSRCYD-IIPETLLELGEIPT 273 (336)
T ss_dssp C--HHHHHHHHHHCTTCSEEECTTCTT-------------CCGGGGGGGGGCTTCCEEECTTCTT-CCGGGGGGGGGCTT
T ss_pred C--HHHHHHHHhhCCCCCEEeCCCCCc-------------CCHHHHHHHhCCCCCCEeeCCCCCC-CCHHHHHHHhcCCC
Confidence 1 144455567788888888887651 1233455666778888888888861 2233 4567888
Q ss_pred CcEEEcC
Q 043450 555 LRDLNLD 561 (561)
Q Consensus 555 L~~L~L~ 561 (561)
|+.|+|+
T Consensus 274 L~~L~l~ 280 (336)
T 2ast_B 274 LKTLQVF 280 (336)
T ss_dssp CCEEECT
T ss_pred CCEEecc
Confidence 8888774
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1.8e-15 Score=147.12 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=141.1
Q ss_pred ccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCccc
Q 043450 351 NLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIG 430 (561)
Q Consensus 351 ~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 430 (561)
+.+..+. .+..+++|++|++++|.++.+|. +..+++|++|++++|. +..++. +..+++|++|++++|. +..+| .
T Consensus 34 ~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~ 107 (291)
T 1h6t_A 34 KSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-S 107 (291)
T ss_dssp SCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-G
T ss_pred CCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-h
Confidence 4444432 25678999999999999998864 8999999999999998 777876 9999999999999998 66665 4
Q ss_pred ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcc
Q 043450 431 ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGE 510 (561)
Q Consensus 431 i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 510 (561)
++.+++|++|+ +.+|.+.. +..+..+++|+.|.+++..- ... ..+..+++|+.|++++|.+...
T Consensus 108 l~~l~~L~~L~--L~~n~i~~-----~~~l~~l~~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~L~~N~l~~~--- 171 (291)
T 1h6t_A 108 LKDLKKLKSLS--LEHNGISD-----INGLVHLPQLESLYLGNNKI-TDI-----TVLSRLTKLDTLSLEDNQISDI--- 171 (291)
T ss_dssp GTTCTTCCEEE--CTTSCCCC-----CGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCC---
T ss_pred hccCCCCCEEE--CCCCcCCC-----ChhhcCCCCCCEEEccCCcC-Ccc-----hhhccCCCCCEEEccCCccccc---
Confidence 99999999998 66666532 35677888888888876432 221 4578999999999999885432
Q ss_pred cccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEEcC
Q 043450 511 EGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 511 ~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 561 (561)
+. +..+++|+.|++++|.++.+|. +..+++|+.|+|+
T Consensus 172 ------------~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 172 ------------VP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF 208 (291)
T ss_dssp ------------GG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEE
T ss_pred ------------hh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECc
Confidence 22 7789999999999999998874 8999999999974
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=7.4e-16 Score=159.36 Aligned_cols=253 Identities=19% Similarity=0.110 Sum_probs=106.8
Q ss_pred CCceEEEEeeecCCCCCcccccccCceeEEEEccCCCC--CcchhhhhhhhhhhhhhHHHhhhc-cCCCCCCCCCCCCCC
Q 043450 241 GEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHY--NPSLFQSMAISSAYSLVNAVLYLV-SSPGLGIDDESPSNP 317 (561)
Q Consensus 241 ~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 317 (561)
...++.+.+..+..+.+|.++.++++|++|.+.++... .+..+.... .+.......+.. ....+.+....+.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~---~L~~l~l~~c~~~~l~~L~l~~~~l~-- 84 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR---EMAVSRLRDCLDRQAHELELNNLGLS-- 84 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCH---HHHHHHHHHHHHHTCSEEECTTSCCS--
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccch---hcchhhhhhhhccCCCEEEecCCccc--
Confidence 35678888888888899988999999999988876210 000000000 000000000000 0000000000000
Q ss_pred CcchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCC
Q 043450 318 SLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRC 397 (561)
Q Consensus 318 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 397 (561)
. +|. -.++|++|++++ +.++.+|.. +.+|++|++++|.++.+|.. .++|++|++++|
T Consensus 85 ~-----lp~---~~~~L~~L~l~~---------n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 85 S-----LPE---LPPHLESLVASC---------NSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN 141 (454)
T ss_dssp C-----CCS---CCTTCSEEECCS---------SCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred c-----CCC---CcCCCCEEEccC---------CcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCC
Confidence 0 000 123455555555 444445432 24566666666655554431 145666666666
Q ss_pred CCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCC
Q 043450 398 QDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNV 477 (561)
Q Consensus 398 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~ 477 (561)
. +..+| .++.+++|++|++++|. +..+|..+ .+|++|+ +.++.+.+ +..+..++.|+.|.+.+..-
T Consensus 142 ~-l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~--L~~n~l~~-----l~~~~~l~~L~~L~l~~N~l- 207 (454)
T 1jl5_A 142 Q-LEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIA--AGNNQLEE-----LPELQNLPFLTAIYADNNSL- 207 (454)
T ss_dssp C-CSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEE--CCSSCCSS-----CCCCTTCTTCCEEECCSSCC-
T ss_pred C-CCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEE--CcCCcCCc-----CccccCCCCCCEEECCCCcC-
Confidence 5 44565 36666666666666665 44455433 3555555 44444322 11244455555555544221
Q ss_pred CCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChhhhcccCCcE
Q 043450 478 SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRD 557 (561)
Q Consensus 478 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 557 (561)
.. .+. ...+|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|.. +++|+.
T Consensus 208 ~~----l~~---~~~~L~~L~l~~n~l~---------------~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~ 261 (454)
T 1jl5_A 208 KK----LPD---LPLSLESIVAGNNILE---------------ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEA 261 (454)
T ss_dssp SS----CCC---CCTTCCEEECCSSCCS---------------SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCE
T ss_pred Cc----CCC---CcCcccEEECcCCcCC---------------ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCE
Confidence 11 111 1135666666655532 344 377888889999988888777753 356666
Q ss_pred EEcC
Q 043450 558 LNLD 561 (561)
Q Consensus 558 L~L~ 561 (561)
|+++
T Consensus 262 L~l~ 265 (454)
T 1jl5_A 262 LNVR 265 (454)
T ss_dssp EECC
T ss_pred EECC
Confidence 6653
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.1e-14 Score=138.36 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=129.0
Q ss_pred ccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCcc-Cccccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLREL-PTGIGK 409 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~ 409 (561)
...+++++++ +.++.+|..+. .++++|++++|.+..++ ..++++++|++|++++|. +..+ |..+..
T Consensus 14 ~~~~~l~~~~---------~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 81 (251)
T 3m19_A 14 EGKKEVDCQG---------KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDD 81 (251)
T ss_dssp GGGTEEECTT---------CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred CCCeEEecCC---------CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhcc
Confidence 4577888888 77888888765 58999999999988665 468899999999999988 5554 446788
Q ss_pred CCCCCeEEcCCCCCCccCc-ccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccc
Q 043450 410 LKNMRSLLNGDTSSLKYLP-IGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 488 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l 488 (561)
+++|++|++++|.. ..+| ..++.+++|++|+ +.+|.+....+.. +..++.|+.|.+.+. ......+..+
T Consensus 82 l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~--L~~N~l~~~~~~~---~~~l~~L~~L~Ls~N----~l~~~~~~~~ 151 (251)
T 3m19_A 82 LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLY--LGGNQLKSLPSGV---FDRLTKLKELRLNTN----QLQSIPAGAF 151 (251)
T ss_dssp CTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTT---TTTCTTCCEEECCSS----CCCCCCTTTT
T ss_pred CCcCCEEECCCCcc-cccChhHhcccCCCCEEE--cCCCcCCCcChhH---hccCCcccEEECcCC----cCCccCHHHc
Confidence 99999999999884 4454 5578899999998 6677664333322 345566666666553 2223333457
Q ss_pred ccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC
Q 043450 489 YNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI 544 (561)
Q Consensus 489 ~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 544 (561)
..+++|+.|+|++|.+... .+..+..+++|+.|++++|++..
T Consensus 152 ~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSV--------------PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCTTCCEEECCSSCCSCC--------------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCcCCCEEECCCCcCCcc--------------CHHHHhCCCCCCEEEeeCCceeC
Confidence 7888999999998875432 23457778899999999998653
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=4.2e-16 Score=162.20 Aligned_cols=34 Identities=3% Similarity=0.025 Sum_probs=22.2
Q ss_pred CceEEEEeeecCCCCCc--ccccccCceeEEEEccC
Q 043450 242 EKVRHIGLNFQRGASFP--MSFFEFDRLRSLLIYDT 275 (561)
Q Consensus 242 ~~~~~l~l~~~~~~~~~--~~~~~~~~Lr~L~~~~~ 275 (561)
..++.+.+..+.....+ ..+..+++|++|.+.++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~ 38 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC 38 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC
Confidence 35667777766654433 22566788888888877
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.1e-15 Score=152.11 Aligned_cols=232 Identities=18% Similarity=0.146 Sum_probs=165.0
Q ss_pred ceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchh
Q 043450 243 KVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSS 322 (561)
Q Consensus 243 ~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (561)
.++.+.+..+.....+..+..+++|+.|.+.++ .+...
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~------------------------------------------~l~~~ 108 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS------------------------------------------VIEVS 108 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTC------------------------------------------EECHH
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCC------------------------------------------CcCHH
Confidence 455566655555444445667899999999887 12233
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCccccc-ccCccccccCccCEEecCCC-CCc--cccccccCCCCccEEecCCCC
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIR-EIPENVEKLIHLKYLNLSGL-RIE--SLPETLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~lp~~~~~l~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~l~~~~ 398 (561)
.++..+..+++|++|++++ +.+. ..|..++.+++|++|++++| .++ .+|..+.++++|++|++++|.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~---------~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEG---------LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp HHHHHHTTBCCCSEEECTT---------CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred HHHHHHhhCCCCCEEeCcC---------cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 3667788999999999999 4454 56777888999999999999 577 478778999999999999993
Q ss_pred CcCc--cCcccccCC-CCCeEEcCCCC-CC--ccCcccccCCcCCcccCceeecCc-cCCCCccCchhhhccCCCCceEE
Q 043450 399 DLRE--LPTGIGKLK-NMRSLLNGDTS-SL--KYLPIGISRLTSLRTLEKFVVGGG-VDGNNTCRLESLKNLQLLRECRV 471 (561)
Q Consensus 399 ~~~~--lp~~~~~l~-~L~~L~l~~~~-~~--~~lp~~i~~l~~L~~L~~~~~~~~-~~~~~~~~~~~l~~L~~L~~l~i 471 (561)
.+.. +|..+..++ +|++|++++|. .+ ..+|..++++++|+.|+ +.++. .. ...+..+..+++|+.|++
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~--l~~~~~l~---~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD--LSDSVMLK---NDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE--CTTCTTCC---GGGGGGGGGCTTCCEEEC
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe--CCCCCcCC---HHHHHHHhCCCCCCEeeC
Confidence 3654 677788999 99999999995 12 55677788899999998 55554 21 233556677788888888
Q ss_pred cCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC-CChhhh
Q 043450 472 EGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI-FPKWLT 550 (561)
Q Consensus 472 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~ 550 (561)
.++... .......+.++++|+.|++++| +.+. ....+. .+|..|++++|.++. .|.+++
T Consensus 255 ~~~~~~---~~~~~~~l~~~~~L~~L~l~~~-i~~~----------~~~~l~------~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDI---IPETLLELGEIPTLKTLQVFGI-VPDG----------TLQLLK------EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTC---CGGGGGGGGGCTTCCEEECTTS-SCTT----------CHHHHH------HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCC---CHHHHHHHhcCCCCCEEeccCc-cCHH----------HHHHHH------hhCcceEEecccCccccCCccc
Confidence 876522 2222245778999999999977 3221 122222 236667788888664 565553
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=2.4e-15 Score=141.92 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=138.7
Q ss_pred cccccCccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCC-CCCCccCc
Q 043450 352 LIREIPENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGD-TSSLKYLP 428 (561)
Q Consensus 352 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~-~~~~~~lp 428 (561)
.++.+|. +. .+|++|++++|.++.+|+ .+.++++|++|++++|..++.+|. .+.++++|++|++++ |. +..+|
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYID 97 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEEC
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcC
Confidence 3777787 54 489999999999998876 688999999999999975777775 789999999999998 66 66666
Q ss_pred -ccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccc-cEEEEeecCCC
Q 043450 429 -IGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLL-RLGLQFGRVAD 506 (561)
Q Consensus 429 -~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~ 506 (561)
..++.+++|++|+ +.++.+.+ .+. +..+.+|+.|+.+++.+.. ......+..+.++++|+ .|++++|.+.
T Consensus 98 ~~~f~~l~~L~~L~--l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~---~l~~i~~~~~~~l~~L~~~L~l~~n~l~- 169 (239)
T 2xwt_C 98 PDALKELPLLKFLG--IFNTGLKM-FPD-LTKVYSTDIFFILEITDNP---YMTSIPVNAFQGLCNETLTLKLYNNGFT- 169 (239)
T ss_dssp TTSEECCTTCCEEE--EEEECCCS-CCC-CTTCCBCCSEEEEEEESCT---TCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred HHHhCCCCCCCEEe--CCCCCCcc-ccc-cccccccccccEEECCCCc---chhhcCcccccchhcceeEEEcCCCCCc-
Confidence 4688999999998 66666543 232 4444444444478887642 22333444588899999 9999988743
Q ss_pred CCcccccCCCcchHHHhhcCCCCCCCceEEEeecC-CCCCCh-hhhcc-cCCcEEEcC
Q 043450 507 GEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYG-GNIFPK-WLTLL-TNLRDLNLD 561 (561)
Q Consensus 507 ~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~-~~~~l-~~L~~L~L~ 561 (561)
.++......++|+.|++++|+ +..+|. .+..+ ++|+.|+|+
T Consensus 170 --------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 170 --------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp --------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred --------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 233333334789999999995 887764 56888 999999985
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=1.5e-14 Score=149.57 Aligned_cols=251 Identities=19% Similarity=0.186 Sum_probs=114.4
Q ss_pred CceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcch
Q 043450 242 EKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNS 321 (561)
Q Consensus 242 ~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (561)
..++.+.+..+....+| .+..+++|++|.+.++.... ++.... ....+.+.. ..+..
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--------lp~~~~---------~L~~L~L~~-----n~l~~ 187 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK--------LPDLPP---------SLEFIAAGN-----NQLEE 187 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC--------CCCCCT---------TCCEEECCS-----SCCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc--------cCCCcc---------cccEEECcC-----CcCCc
Confidence 57788888888877777 68888888888888773210 000000 000000000 00000
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcC
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLR 401 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~ 401 (561)
++ .+.++++|++|++++ |.+..+|... .+|++|++++|.++.+|. ++.+++|++|++++|. +.
T Consensus 188 --l~-~~~~l~~L~~L~l~~---------N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~ 250 (454)
T 1jl5_A 188 --LP-ELQNLPFLTAIYADN---------NSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LK 250 (454)
T ss_dssp --CC-CCTTCTTCCEEECCS---------SCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CS
T ss_pred --Cc-cccCCCCCCEEECCC---------CcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CC
Confidence 11 144555566666655 4444444322 355666666666555553 5566666666666655 44
Q ss_pred ccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcc
Q 043450 402 ELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVD 481 (561)
Q Consensus 402 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~ 481 (561)
.+|.. +++|+.|++++|. +..+|.. +++|+.|+ +.+|.+.+. +... ..|+.|.+.+..- .
T Consensus 251 ~l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~--ls~N~l~~l-~~~~------~~L~~L~l~~N~l-~--- 310 (454)
T 1jl5_A 251 TLPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFLD--VSENIFSGL-SELP------PNLYYLNASSNEI-R--- 310 (454)
T ss_dssp SCCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEE--CCSSCCSEE-SCCC------TTCCEEECCSSCC-S---
T ss_pred ccccc---ccccCEEECCCCc-ccccCcc---cCcCCEEE--CcCCccCcc-cCcC------CcCCEEECcCCcC-C---
Confidence 45542 2556666666655 3445442 24555555 334433210 0000 2233333322110 0
Q ss_pred hhhhcccccc-cccccEEEEeecCCCCCcc-----c-ccCCCcchHHHhhcCCCCCCCceEEEeecCCCC---CChhhhc
Q 043450 482 EAERLQLYNK-KNLLRLGLQFGRVADGEGE-----E-GRRKNENDEQLLEALQPPVNVEELWIVYYGGNI---FPKWLTL 551 (561)
Q Consensus 482 ~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~-----~-~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~---lp~~~~~ 551 (561)
.+..+ ++|+.|++++|.+...+.. . ....|. ...+|. .+++|+.|++++|.+.. +|.++..
T Consensus 311 -----~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 311 -----SLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp -----EECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred -----cccCCcCcCCEEECCCCccccccccCCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 01111 3455555555543321100 0 000111 122343 35788888888888654 6677777
Q ss_pred c-------------cCCcEEEcC
Q 043450 552 L-------------TNLRDLNLD 561 (561)
Q Consensus 552 l-------------~~L~~L~L~ 561 (561)
+ ++|+.|+|+
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp EECCC------------------
T ss_pred hhhcccccccccccCcCCEEECC
Confidence 7 778888774
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1e-15 Score=159.25 Aligned_cols=283 Identities=17% Similarity=0.151 Sum_probs=171.5
Q ss_pred ceEEEEeeecCCC-----CCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCC
Q 043450 243 KVRHIGLNFQRGA-----SFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNP 317 (561)
Q Consensus 243 ~~~~l~l~~~~~~-----~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (561)
+++.+.+..+... .++..+..+++|+.|.+.++.. .......+...+.. .......+.+..... .
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i---~~~~~~~l~~~l~~-----~~~~L~~L~L~~n~l--~ 155 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL---GDAGLQLLCEGLLD-----PQCRLEKLQLEYCSL--S 155 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC---HHHHHHHHHHHHTS-----TTCCCCEEECTTSCC--B
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC---chHHHHHHHHHHhc-----CCCcceEEECCCCCC--C
Confidence 5778888887765 3456678889999999988732 11111111110000 000001111111100 1
Q ss_pred CcchhHHHHHHhccccccEEeccCCCCCCCCCccccccc-Ccccc-----ccCccCEEecCCCCCcc-----ccccccCC
Q 043450 318 SLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREI-PENVE-----KLIHLKYLNLSGLRIES-----LPETLCEL 386 (561)
Q Consensus 318 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~-----~l~~L~~L~l~~~~l~~-----lp~~i~~L 386 (561)
......++..+..+++|++|++++ +.+... +..+. .+++|++|++++|.++. +|..+..+
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~---------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSN---------NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCS---------SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcC---------CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 111234566677889999999998 555432 22222 25689999999998874 57778888
Q ss_pred CCccEEecCCCCCcCcc------CcccccCCCCCeEEcCCCCCCcc-----CcccccCCcCCcccCceeecCccCCCCcc
Q 043450 387 YNLQKLDIRRCQDLREL------PTGIGKLKNMRSLLNGDTSSLKY-----LPIGISRLTSLRTLEKFVVGGGVDGNNTC 455 (561)
Q Consensus 387 ~~L~~L~l~~~~~~~~l------p~~~~~l~~L~~L~l~~~~~~~~-----lp~~i~~l~~L~~L~~~~~~~~~~~~~~~ 455 (561)
++|++|++++|. +... +..+..+++|++|++++|. ++. +|..+.++++|++|+ +.+|.+...
T Consensus 227 ~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~--Ls~n~i~~~--- 299 (461)
T 1z7x_W 227 ASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELS--LAGNELGDE--- 299 (461)
T ss_dssp TTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEE--CTTCCCHHH---
T ss_pred CCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEE--CCCCCCchH---
Confidence 999999999987 4332 2223357889999999987 444 677777888899887 555544211
Q ss_pred Cchhhhc-----cCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCC-CC
Q 043450 456 RLESLKN-----LQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQ-PP 529 (561)
Q Consensus 456 ~~~~l~~-----L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~-~~ 529 (561)
....+.. .+.|+.|.+.++.-.......++..+..+++|+.|++++|.+.+. ....+.+.+. +.
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~----------~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA----------GVRELCQGLGQPG 369 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH----------HHHHHHHHHTSTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc----------cHHHHHHHHcCCC
Confidence 1122222 246777887765422222233555667788999999988764211 1222333343 26
Q ss_pred CCCceEEEeecCCC-----CCChhhhcccCCcEEEcC
Q 043450 530 VNVEELWIVYYGGN-----IFPKWLTLLTNLRDLNLD 561 (561)
Q Consensus 530 ~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~ 561 (561)
++|+.|++++|.+. .+|..+..+++|+.|+|+
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 78888888888876 577788888888888875
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.8e-15 Score=152.18 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=25.6
Q ss_pred CccCEEecCCCCCccccc-c----ccC-CCCccEEecCCCCCcC-----ccCcccccCC-CCCeEEcCCCC
Q 043450 364 IHLKYLNLSGLRIESLPE-T----LCE-LYNLQKLDIRRCQDLR-----ELPTGIGKLK-NMRSLLNGDTS 422 (561)
Q Consensus 364 ~~L~~L~l~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~~~-----~lp~~~~~l~-~L~~L~l~~~~ 422 (561)
++|++|++++|.++..+. . +.. .++|++|++++|. ++ .++..+..++ +|++|++++|.
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 455555555555443321 1 222 1355555555554 22 2233333333 55555555554
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=4.6e-15 Score=158.17 Aligned_cols=175 Identities=20% Similarity=0.264 Sum_probs=137.3
Q ss_pred hccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIG 408 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~ 408 (561)
..+.+|+.|++++ +.+..+| .++.+++|++|+|++|.+..+|+ +..+++|+.|+|++|. +..+| .+.
T Consensus 40 ~~L~~L~~L~l~~---------n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 40 NELNSIDQIIANN---------SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLK 106 (605)
T ss_dssp HHHTTCCCCBCTT---------CCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TST
T ss_pred hcCCCCCEEECcC---------CCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhc
Confidence 5688899999998 6777776 48889999999999999998877 8999999999999998 77776 688
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQL 488 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l 488 (561)
.+++|+.|++++|. +..+| .++.+++|+.|+ +.+|.+.. +..+..|+.|+.|++++..- ....+ +
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~--Ls~N~l~~-----l~~l~~l~~L~~L~Ls~N~l----~~~~~--l 171 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLY--LGNNKITD-----ITVLSRLTKLDTLSLEDNQI----SDIVP--L 171 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEE--CCSSCCCC-----CGGGGSCTTCSEEECCSSCC----CCCGG--G
T ss_pred cCCCCCEEEecCCC-CCCCc-cccCCCccCEEE--CCCCccCC-----chhhcccCCCCEEECcCCcC----CCchh--h
Confidence 99999999999998 55554 588999999998 66666532 35677788888888876432 22222 7
Q ss_pred ccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCCh
Q 043450 489 YNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPK 547 (561)
Q Consensus 489 ~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~ 547 (561)
..+++|+.|+|+.|.+.. + +.+..+++|+.|++++|.+...|.
T Consensus 172 ~~l~~L~~L~Ls~N~i~~---------------l-~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISD---------------L-RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TTCTTCCEEECCSSCCCB---------------C-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred ccCCCCCEEECcCCCCCC---------------C-hHHccCCCCCEEEccCCcCcCCcc
Confidence 888999999999887532 1 347788999999999998766553
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=7.5e-16 Score=156.40 Aligned_cols=216 Identities=16% Similarity=0.126 Sum_probs=156.2
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccc-----cCccccccCccCEEecCCCCCc----cccccc-------cCCC
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIRE-----IPENVEKLIHLKYLNLSGLRIE----SLPETL-------CELY 387 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~i-------~~L~ 387 (561)
+...+..+++|++|++++ +.+.. ++..+..+++|++|++++|.+. .+|..+ ..++
T Consensus 24 l~~~l~~~~~L~~L~L~~---------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSG---------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp TSHHHHHCSCCCEEECTT---------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHhcCCCccEEECCC---------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 345577889999999999 55543 4455778999999999997543 445554 7899
Q ss_pred CccEEecCCCCCcC----ccCcccccCCCCCeEEcCCCCCCcc----CcccccCC---------cCCcccCceeecCccC
Q 043450 388 NLQKLDIRRCQDLR----ELPTGIGKLKNMRSLLNGDTSSLKY----LPIGISRL---------TSLRTLEKFVVGGGVD 450 (561)
Q Consensus 388 ~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----lp~~i~~l---------~~L~~L~~~~~~~~~~ 450 (561)
+|++|++++|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|+ +.+|.+.
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~--L~~n~l~ 172 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII--CGRNRLE 172 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE--CCSSCCT
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE--CCCCCCC
Confidence 99999999998443 3788899999999999999985322 33334444 8999998 6666553
Q ss_pred -CCCccCchhhhccCCCCceEEcCCCCCCC--cchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCC
Q 043450 451 -GNNTCRLESLKNLQLLRECRVEGLSNVSH--VDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQ 527 (561)
Q Consensus 451 -~~~~~~~~~l~~L~~L~~l~i~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~ 527 (561)
...+.....+..++.|+.|.+.++.- .. .....+..+..+++|+.|+|++|.+.. .....++..+.
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----------~g~~~l~~~l~ 241 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----------LGSSALAIALK 241 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----------HHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCC-CHhHHHHHHHHHhhcCCCccEEECcCCCCCc----------HHHHHHHHHHc
Confidence 11121123566788888888877532 21 111334478899999999999887421 01366788899
Q ss_pred CCCCCceEEEeecCCCC-----CChhhhc--ccCCcEEEcC
Q 043450 528 PPVNVEELWIVYYGGNI-----FPKWLTL--LTNLRDLNLD 561 (561)
Q Consensus 528 ~~~~L~~L~l~~~~~~~-----lp~~~~~--l~~L~~L~L~ 561 (561)
.+++|+.|++++|.+.. +|.++.. +++|+.|+|+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 99999999999999764 4667744 9999999985
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=7.2e-15 Score=156.65 Aligned_cols=149 Identities=24% Similarity=0.295 Sum_probs=85.6
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+++|+.|+|++ |.+..+|+ ++.+++|++|+|++|.+..+| .+..+++|+.|+|++|. +..+| .+
T Consensus 61 l~~l~~L~~L~Ls~---------N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l 127 (605)
T 1m9s_A 61 IQYLPNVTKLFLNG---------NKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GL 127 (605)
T ss_dssp GGGCTTCCEEECTT---------SCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GG
T ss_pred HccCCCCCEEEeeC---------CCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCc-cc
Confidence 55666666666666 55555554 666666666666666666554 46666666666666666 44443 36
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
..+++|+.|++++|. +..+ ..++.+++|+.|+ +.+|.+.+..+ +..++.|+.|.+++..- .. . ..
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~--Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~i-~~----l-~~ 192 (605)
T 1m9s_A 128 VHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLS--LEDNQISDIVP-----LAGLTKLQNLYLSKNHI-SD----L-RA 192 (605)
T ss_dssp GGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEE--CCSSCCCCCGG-----GTTCTTCCEEECCSSCC-CB----C-GG
T ss_pred cCCCccCEEECCCCc-cCCc-hhhcccCCCCEEE--CcCCcCCCchh-----hccCCCCCEEECcCCCC-CC----C-hH
Confidence 666666666666666 3444 3566666666665 44554422211 44555555555554321 11 1 23
Q ss_pred cccccccccEEEEeecC
Q 043450 488 LYNKKNLLRLGLQFGRV 504 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~ 504 (561)
+..+++|+.|+|+.|.+
T Consensus 193 l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GTTCTTCSEEECCSEEE
T ss_pred HccCCCCCEEEccCCcC
Confidence 55666666666666654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=1.8e-14 Score=136.82 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=134.3
Q ss_pred CccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCce
Q 043450 364 IHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKF 443 (561)
Q Consensus 364 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~ 443 (561)
...++++++++.++.+|..+. ++|+.|++++|......|..+.++++|++|++++|......|..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-- 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG-- 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE--
Confidence 568899999999999998876 7999999999994444455799999999999999995555555689999999998
Q ss_pred eecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHh
Q 043450 444 VVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLL 523 (561)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~ 523 (561)
+.+|.+....+.. +..+++|+.|.+.+. ......+..+.++++|+.|+|++|.+... .+
T Consensus 90 L~~n~l~~~~~~~---~~~l~~L~~L~L~~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~ 148 (251)
T 3m19_A 90 LANNQLASLPLGV---FDHLTQLDKLYLGGN----QLKSLPSGVFDRLTKLKELRLNTNQLQSI--------------PA 148 (251)
T ss_dssp CTTSCCCCCCTTT---TTTCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--------------CT
T ss_pred CCCCcccccChhH---hcccCCCCEEEcCCC----cCCCcChhHhccCCcccEEECcCCcCCcc--------------CH
Confidence 6777765444333 345566777777653 22233344578899999999999885432 23
Q ss_pred hcCCCCCCCceEEEeecCCCCCCh-hhhcccCCcEEEcC
Q 043450 524 EALQPPVNVEELWIVYYGGNIFPK-WLTLLTNLRDLNLD 561 (561)
Q Consensus 524 ~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~ 561 (561)
..+..+++|+.|++++|.+..+|. .+..+++|+.|+|+
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 357889999999999999988776 56899999999985
No 95
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.53 E-value=2.3e-14 Score=153.02 Aligned_cols=224 Identities=22% Similarity=0.179 Sum_probs=143.9
Q ss_pred ceEEEeecCcceeeeeecCCceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhc
Q 043450 223 ECLWVEINGTKELVINFFGEKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLV 302 (561)
Q Consensus 223 e~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (561)
..+....+....++. ...+++.+.+..+.++.+|. .+++|++|.+.++...
T Consensus 64 ~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~------------------------ 114 (622)
T 3g06_A 64 TTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT------------------------ 114 (622)
T ss_dssp SEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC------------------------
T ss_pred cEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC------------------------
Confidence 345555555444433 56789999999999988885 7899999999988220
Q ss_pred cCCCCCCCCCCCCCCCcchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccccc
Q 043450 303 SSPGLGIDDESPSNPSLNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPET 382 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~ 382 (561)
. ++ ..+.+|+.|++++ |.+..+|.. +++|++|++++|.++.+|..
T Consensus 115 ---------------~-----l~---~~l~~L~~L~L~~---------N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~ 159 (622)
T 3g06_A 115 ---------------H-----LP---ALPSGLCKLWIFG---------NQLTSLPVL---PPGLQELSVSDNQLASLPAL 159 (622)
T ss_dssp ---------------C-----CC---CCCTTCCEEECCS---------SCCSCCCCC---CTTCCEEECCSSCCSCCCCC
T ss_pred ---------------C-----CC---CCCCCcCEEECCC---------CCCCcCCCC---CCCCCEEECcCCcCCCcCCc
Confidence 0 00 1457788888888 667777764 37788888888887776653
Q ss_pred ccCC-----------------CCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceee
Q 043450 383 LCEL-----------------YNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVV 445 (561)
Q Consensus 383 i~~L-----------------~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~ 445 (561)
+.+| ++|+.|++++|. +..+|.. +++|+.|++++|. +..+|.. +++|+.|+ +.
T Consensus 160 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~-l~~l~~~---~~~L~~L~--Ls 229 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELI--VS 229 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCCCC---CTTCCEEE--CC
T ss_pred cCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCc-ccccCCC---CCCCCEEE--cc
Confidence 3221 555556666555 4455532 3456666666555 4455532 36677776 55
Q ss_pred cCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhc
Q 043450 446 GGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEA 525 (561)
Q Consensus 446 ~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~ 525 (561)
+|.+.+ .+ ..+++|+.|++++.. +.. ++. .+++|+.|+|++|.+. .+|..
T Consensus 230 ~N~L~~-lp------~~l~~L~~L~Ls~N~-L~~----lp~---~~~~L~~L~Ls~N~L~---------------~lp~~ 279 (622)
T 3g06_A 230 GNRLTS-LP------VLPSELKELMVSGNR-LTS----LPM---LPSGLLSLSVYRNQLT---------------RLPES 279 (622)
T ss_dssp SSCCSC-CC------CCCTTCCEEECCSSC-CSC----CCC---CCTTCCEEECCSSCCC---------------SCCGG
T ss_pred CCccCc-CC------CCCCcCcEEECCCCC-CCc----CCc---ccccCcEEeCCCCCCC---------------cCCHH
Confidence 555432 11 334567777776532 121 222 5678999999988743 45777
Q ss_pred CCCCCCCceEEEeecCCCC-CChhhh
Q 043450 526 LQPPVNVEELWIVYYGGNI-FPKWLT 550 (561)
Q Consensus 526 l~~~~~L~~L~l~~~~~~~-lp~~~~ 550 (561)
+..+++|+.|++++|.++. .|..+.
T Consensus 280 l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp GGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred HhhccccCEEEecCCCCCCcCHHHHH
Confidence 8899999999999999763 344444
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=5.1e-15 Score=145.46 Aligned_cols=181 Identities=13% Similarity=-0.007 Sum_probs=133.8
Q ss_pred hccccccEEeccCCCCCCCCCccccccc-C----ccccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIREI-P----ENVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p----~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
..+.+|++|++++ |.+... | ..+..+++|++|++++|.+..+| ..++.+++|++|++++|+....
T Consensus 114 ~~~~~L~~L~Ls~---------n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 184 (310)
T 4glp_A 114 ATGLALSSLRLRN---------VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGE 184 (310)
T ss_dssp CCCBCCSSCEEES---------CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHH
T ss_pred ccCCCCCEEEeec---------ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccc
Confidence 6788999999999 555542 2 23456899999999999998665 6788999999999999984331
Q ss_pred --cC--cccccCCCCCeEEcCCCCCCccCccc----ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCC
Q 043450 403 --LP--TGIGKLKNMRSLLNGDTSSLKYLPIG----ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGL 474 (561)
Q Consensus 403 --lp--~~~~~l~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~ 474 (561)
+| ..++.+++|++|++++|. +..+|.. ++.+++|++|+ +.+|.+.+..|..+..+..++.|+.|++++.
T Consensus 185 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~--Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 185 RGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLD--LSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp HHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEE--CTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred hhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEE--CCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 33 234789999999999998 5655543 47889999998 7788776665666666666678888888664
Q ss_pred CCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC
Q 043450 475 SNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI 544 (561)
Q Consensus 475 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 544 (561)
.- . ..+..+. ++|+.|+|++|.+... + .+..+++|+.|++++|+++.
T Consensus 262 ~l-~----~lp~~~~--~~L~~L~Ls~N~l~~~---------------~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 262 GL-E----QVPKGLP--AKLRVLDLSSNRLNRA---------------P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-C----SCCSCCC--SCCSCEECCSCCCCSC---------------C-CTTSCCCCSCEECSSTTTSC
T ss_pred CC-C----chhhhhc--CCCCEEECCCCcCCCC---------------c-hhhhCCCccEEECcCCCCCC
Confidence 32 1 2233333 7999999999986432 2 24677999999999998753
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=4.6e-14 Score=128.72 Aligned_cols=107 Identities=13% Similarity=0.223 Sum_probs=83.3
Q ss_pred hccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIG 408 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~ 408 (561)
..+.+|+.|++++ +.+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++
T Consensus 41 ~~l~~L~~L~l~~---------n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLAN---------INVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEES---------SCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccC---------CCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhc
Confidence 4577788888888 6777777 5788888888888888776654 678888888888888884444677788
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGG 448 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~ 448 (561)
.+++|++|++++|......|..++++++|++|+ +.+|.
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~--L~~n~ 147 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSID--LSYNG 147 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE--CCSCT
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE--ccCCC
Confidence 888888888888886556677788888888887 44443
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2.2e-14 Score=137.10 Aligned_cols=148 Identities=19% Similarity=0.218 Sum_probs=82.1
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+.+|++|++++ +.+..+| .++.+++|++|++++|.++.+|+ +.++++|++|++++|. +..+|...
T Consensus 37 ~~~l~~L~~L~l~~---------n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~ 104 (263)
T 1xeu_A 37 QKELSGVQNFNGDN---------SNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIP 104 (263)
T ss_dssp HHHHTTCSEEECTT---------SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCC
T ss_pred hhhcCcCcEEECcC---------CCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccc
Confidence 34566666666666 4555555 45666666666666666666655 6666666666666665 55555422
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
. ++|++|++++|. +..+| .++++++|+.|+ +.+|.+.+ +..+..++.|+.|++.+..- . .. ..
T Consensus 105 ~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~--Ls~N~i~~-----~~~l~~l~~L~~L~L~~N~i-~---~~--~~ 167 (263)
T 1xeu_A 105 S--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILS--IRNNKLKS-----IVMLGFLSKLEVLDLHGNEI-T---NT--GG 167 (263)
T ss_dssp C--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEE--CTTSCCCB-----CGGGGGCTTCCEEECTTSCC-C---BC--TT
T ss_pred c--CcccEEEccCCc-cCCCh-hhcCcccccEEE--CCCCcCCC-----ChHHccCCCCCEEECCCCcC-c---ch--HH
Confidence 2 666666666665 44443 466666666665 44444321 12344555555555544221 1 11 33
Q ss_pred cccccccccEEEEeecC
Q 043450 488 LYNKKNLLRLGLQFGRV 504 (561)
Q Consensus 488 l~~l~~L~~L~l~~~~~ 504 (561)
+..+++|+.|++++|.+
T Consensus 168 l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp STTCCCCCEEEEEEEEE
T ss_pred hccCCCCCEEeCCCCcc
Confidence 55556666666665553
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=1.6e-14 Score=157.75 Aligned_cols=123 Identities=25% Similarity=0.285 Sum_probs=102.0
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCc
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
.++..+..+..|++|+|++ |.+..+|..+..+++|++|+|++|.|+.+|..|++|++|++|+|++|. +..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~---------n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~ 284 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSN---------LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTS 284 (727)
T ss_dssp -------CCCCCCEEECTT---------SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSS
T ss_pred cChhhhccCCCCcEEECCC---------CCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCc
Confidence 4566788899999999999 778889988889999999999999999999999999999999999998 778
Q ss_pred cCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCch
Q 043450 403 LPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLE 458 (561)
Q Consensus 403 lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 458 (561)
+|..++++++|++|+|++|. ++.+|.+|+++++|++|+ +.+|.+.+..+..+.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~--L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG--VEGNPLEKQFLKILT 337 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE--CTTSCCCSHHHHHHH
T ss_pred cChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe--CCCCccCCCChHHHh
Confidence 99999999999999999997 678999999999999998 777777555444443
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=1.1e-13 Score=149.86 Aligned_cols=147 Identities=19% Similarity=0.269 Sum_probs=105.5
Q ss_pred cCCceEEEEeeecCCCCCc-ccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCC
Q 043450 240 FGEKVRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPS 318 (561)
Q Consensus 240 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (561)
.+..++.+.+..+.++.++ .+|.++++|++|.+.++..
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i----------------------------------------- 88 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI----------------------------------------- 88 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-----------------------------------------
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-----------------------------------------
Confidence 3567888888888877776 4678888888888887621
Q ss_pred cchhHHHHHHhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCccccc-cccCCCCccEEecCC
Q 043450 319 LNSSILRELFSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRR 396 (561)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~ 396 (561)
..+.+..|.++++|++|+|++ |.++.+|. .|..+++|++|++++|.++.+|+ .|++|++|++|++++
T Consensus 89 --~~i~~~~f~~L~~L~~L~Ls~---------N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 89 --QTIEDGAYQSLSHLSTLILTG---------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp --CEECTTTTTTCTTCCEEECTT---------CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred --CCcChhHhcCCCCCCEEEccC---------CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence 122334467788888888888 67777764 46778888888888888887765 478888888888888
Q ss_pred CCCcC--ccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcc
Q 043450 397 CQDLR--ELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRT 439 (561)
Q Consensus 397 ~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 439 (561)
|. +. .+|..++.+++|++|++++|...+..|..++.+.+++.
T Consensus 158 N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 158 NL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp SC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred Cc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 87 43 35677788888888888888744444555655555544
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.8e-13 Score=124.82 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=96.8
Q ss_pred CceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcch
Q 043450 242 EKVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNS 321 (561)
Q Consensus 242 ~~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (561)
..++.+.+..+.+..++ .+..+++|++|.+.++..
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-------------------------------------------- 78 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-------------------------------------------- 78 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC--------------------------------------------
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC--------------------------------------------
Confidence 45667777777766666 567777777777776611
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCcccccc-cCccccccCccCEEecCCCCCc-cccccccCCCCccEEecCCCCC
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLIRE-IPENVEKLIHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQD 399 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~ 399 (561)
..+ ..+..+++|++|++++ +.+.. .|..++.+++|++|++++|.++ ..|..++.+++|++|++++|..
T Consensus 79 ~~~-~~l~~l~~L~~L~l~~---------n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 79 TNY-NPISGLSNLERLRIMG---------KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148 (197)
T ss_dssp SCC-GGGTTCTTCCEEEEEC---------TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred Ccc-hhhhcCCCCCEEEeEC---------CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence 000 1255677777777777 45554 4666777777777777777776 3566677777777777777765
Q ss_pred cCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCcc
Q 043450 400 LRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 400 ~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~ 449 (561)
++.+| .+..+++|++|++++|. +..+| .+..+++|++|+ +.+|.+
T Consensus 149 i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~--l~~N~i 193 (197)
T 4ezg_A 149 ITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLY--AFSQTI 193 (197)
T ss_dssp CCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEE--ECBC--
T ss_pred ccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEE--eeCccc
Confidence 66666 47777777777777776 45555 566777777776 444443
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=1.2e-13 Score=127.05 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=86.2
Q ss_pred ccccccCccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCCCCccCc
Q 043450 351 NLIREIPENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTSSLKYLP 428 (561)
Q Consensus 351 ~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp 428 (561)
+.+..+|..+ .++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 92 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLP 92 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred CCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CCccC
Confidence 4455555433 23566666666666555433 4556666666666655 444443 24556666666666665 33333
Q ss_pred cc-ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCC
Q 043450 429 IG-ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADG 507 (561)
Q Consensus 429 ~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 507 (561)
.. ++.+++|++|+ +.+|.+.+..+.. +..+++|+.|++.+.. ........+..+++|+.|+++.|.+
T Consensus 93 ~~~~~~l~~L~~L~--L~~N~l~~~~~~~---~~~l~~L~~L~l~~N~----l~~~~~~~~~~l~~L~~L~l~~N~~--- 160 (208)
T 2o6s_A 93 NGVFDKLTQLKELA--LNTNQLQSLPDGV---FDKLTQLKDLRLYQNQ----LKSVPDGVFDRLTSLQYIWLHDNPW--- 160 (208)
T ss_dssp TTTTTTCTTCCEEE--CCSSCCCCCCTTT---TTTCTTCCEEECCSSC----CSCCCTTTTTTCTTCCEEECCSCCB---
T ss_pred HhHhcCccCCCEEE--cCCCcCcccCHhH---hccCCcCCEEECCCCc----cceeCHHHhccCCCccEEEecCCCe---
Confidence 32 45566666665 4444442222211 2333444444444321 1122223355667777777776642
Q ss_pred CcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC-CCChhhhccc
Q 043450 508 EGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN-IFPKWLTLLT 553 (561)
Q Consensus 508 ~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~ 553 (561)
.+.+++|+.|+++.|.+. .+|.+++.++
T Consensus 161 ------------------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 161 ------------------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------------------CCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------------------ecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 234556666666666644 5666665443
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=2.7e-14 Score=143.47 Aligned_cols=214 Identities=12% Similarity=0.124 Sum_probs=102.8
Q ss_pred HHHhccc-cccEEeccCCCCCCCCCccccccc-Ccccccc-----CccCEEecCCCCCcccc-cc----ccCC-CCccEE
Q 043450 326 ELFSKLA-CLRALVISQPSPIFRPDLNLIREI-PENVEKL-----IHLKYLNLSGLRIESLP-ET----LCEL-YNLQKL 392 (561)
Q Consensus 326 ~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~l~~lp-~~----i~~L-~~L~~L 392 (561)
..+..++ +|++|++++ |.++.. +..+..+ ++|++|++++|.++..+ .. +..+ ++|++|
T Consensus 44 ~~l~~~~~~L~~L~Ls~---------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 114 (362)
T 3goz_A 44 QAFANTPASVTSLNLSG---------NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL 114 (362)
T ss_dssp HHHHTCCTTCCEEECCS---------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHhCCCceeEEECcC---------CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEE
Confidence 3344555 566666665 444433 3333433 56666666666655332 22 3333 566666
Q ss_pred ecCCCCCcCccCc-cc----cc-CCCCCeEEcCCCCCCc----cCcccccCCc-CCcccCceeecCccCCCCccCch-hh
Q 043450 393 DIRRCQDLRELPT-GI----GK-LKNMRSLLNGDTSSLK----YLPIGISRLT-SLRTLEKFVVGGGVDGNNTCRLE-SL 460 (561)
Q Consensus 393 ~l~~~~~~~~lp~-~~----~~-l~~L~~L~l~~~~~~~----~lp~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~-~l 460 (561)
++++|. +...+. .+ .. .++|++|++++|.... .++..+..++ +|++|+ +.+|.+....+..+. .+
T Consensus 115 ~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~--Ls~n~l~~~~~~~l~~~l 191 (362)
T 3goz_A 115 DLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN--LRGNNLASKNCAELAKFL 191 (362)
T ss_dssp ECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE--CTTSCGGGSCHHHHHHHH
T ss_pred ECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee--ecCCCCchhhHHHHHHHH
Confidence 666665 333322 22 22 2466666666665321 2333334443 666665 444444322222222 22
Q ss_pred hcc-CCCCceEEcCCCCCCCcchhhhccccc-ccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEe
Q 043450 461 KNL-QLLRECRVEGLSNVSHVDEAERLQLYN-KKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIV 538 (561)
Q Consensus 461 ~~L-~~L~~l~i~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~ 538 (561)
... +.|+.|++++..-.......++..+.. .++|+.|+|++|.+.+. ....+...+..+++|+.|+++
T Consensus 192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----------~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP----------SLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC----------CHHHHHHTTTTTTTCSEEEEE
T ss_pred HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH----------HHHHHHHHHhcCCCccEEEec
Confidence 333 356666665433111111123333443 24677777776665432 133444555666777777777
Q ss_pred ecCCCCCC--------hhhhcccCCcEEEcC
Q 043450 539 YYGGNIFP--------KWLTLLTNLRDLNLD 561 (561)
Q Consensus 539 ~~~~~~lp--------~~~~~l~~L~~L~L~ 561 (561)
+|.+..++ ..+.++++|+.|+|+
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 77633332 223455666666653
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=2.3e-15 Score=159.49 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=111.4
Q ss_pred HHHHHHhccccccEEeccCCCCCC-----CCCcccccccCccccccCccCEEe-cCCCCCccccc------cccC--CCC
Q 043450 323 ILRELFSKLACLRALVISQPSPIF-----RPDLNLIREIPENVEKLIHLKYLN-LSGLRIESLPE------TLCE--LYN 388 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~lp~~~~~l~~L~~L~-l~~~~l~~lp~------~i~~--L~~ 388 (561)
.+|..++.+++|+.|+++++..+. ....+..+..|..++.+++|+.|+ ++.+.+..++. .+.. ...
T Consensus 363 ~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~ 442 (567)
T 1dce_A 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442 (567)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccC
Confidence 455556666667766665421000 000012333455566666666666 44443332221 1111 124
Q ss_pred ccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCc
Q 043450 389 LQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRE 468 (561)
Q Consensus 389 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 468 (561)
|+.|++++|. +..+|. ++.+++|+.|++++|. +..+|..++++++|++|+ +.+|.+.+
T Consensus 443 L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~--Ls~N~l~~----------------- 500 (567)
T 1dce_A 443 VRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQ--ASDNALEN----------------- 500 (567)
T ss_dssp CSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEE--CCSSCCCC-----------------
T ss_pred ceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEE--CCCCCCCC-----------------
Confidence 6777777776 666765 7777777777777776 456777777777777776 44443311
Q ss_pred eEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChh
Q 043450 469 CRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKW 548 (561)
Q Consensus 469 l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~ 548 (561)
++ .+.++++|+.|+|++|.+.... .|..+..+++|+.|++++|.++.+|+.
T Consensus 501 ---------------lp-~l~~l~~L~~L~Ls~N~l~~~~-------------~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 501 ---------------VD-GVANLPRLQELLLCNNRLQQSA-------------AIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp ---------------CG-GGTTCSSCCEEECCSSCCCSSS-------------TTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ---------------Cc-ccCCCCCCcEEECCCCCCCCCC-------------CcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 11 3556677888888877643210 166788889999999999998777654
Q ss_pred h----hcccCCcEEEc
Q 043450 549 L----TLLTNLRDLNL 560 (561)
Q Consensus 549 ~----~~l~~L~~L~L 560 (561)
+ ..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 4 45899999985
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1e-13 Score=146.22 Aligned_cols=134 Identities=24% Similarity=0.290 Sum_probs=100.5
Q ss_pred ceEEEEeeecCCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchh
Q 043450 243 KVRHIGLNFQRGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSS 322 (561)
Q Consensus 243 ~~~~l~l~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (561)
+++.+.+..+..+.+|..+ +++|++|.+.++.. .
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l-------------------------------------------~- 93 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-------------------------------------------I- 93 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC-------------------------------------------S-
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC-------------------------------------------c-
Confidence 5677788877777777544 37888888888722 0
Q ss_pred HHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCc
Q 043450 323 ILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
.+| ..+.+|++|++++ |.++.+|. ++. +|++|++++|.++.+|. .+++|++|++++|. ++.
T Consensus 94 ~ip---~~l~~L~~L~Ls~---------N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~ 154 (571)
T 3cvr_A 94 SLP---ELPASLEYLDACD---------NRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTM 154 (571)
T ss_dssp CCC---CCCTTCCEEECCS---------SCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSC
T ss_pred ccc---cccCCCCEEEccC---------CCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCc
Confidence 111 2367888999988 67777877 655 88999999998888887 67889999999888 677
Q ss_pred cCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccC
Q 043450 403 LPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVD 450 (561)
Q Consensus 403 lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~ 450 (561)
+|. .+++|+.|++++|. +..+|. ++ ++|+.|+ +.+|.+.
T Consensus 155 lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~--Ls~N~L~ 193 (571)
T 3cvr_A 155 LPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALD--VSTNLLE 193 (571)
T ss_dssp CCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEE--CCSSCCS
T ss_pred CCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEE--CcCCCCC
Confidence 886 57788999998888 566887 65 7888887 5566553
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.42 E-value=1.8e-13 Score=148.12 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=73.6
Q ss_pred cccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc-cccc
Q 043450 333 CLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT-GIGK 409 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~ 409 (561)
++++|+|++ |.++.+|+ .|..+++|++|+|++|.|+.+|+ .|.+|++|++|+|++|+ ++.+|. .+.+
T Consensus 53 ~~~~LdLs~---------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSF---------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTT---------SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT
T ss_pred CCCEEEeeC---------CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC
Confidence 466777776 66666653 46667777777777777666654 46667777777777766 555554 4566
Q ss_pred CCCCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcC
Q 043450 410 LKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEG 473 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~ 473 (561)
+++|++|++++|. +..+|. .|+++++|++|+ +.+|.+.... ....+..++.|+.|.+.+
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~--Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELN--VAHNLIQSFK--LPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEE--CCSSCCCCCC--CCGGGGGCTTCCEEECCS
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeec--cccCccccCC--CchhhccchhhhhhcccC
Confidence 6777777777666 444443 366667777766 4444432111 112233444455555543
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.1e-12 Score=125.16 Aligned_cols=173 Identities=18% Similarity=0.122 Sum_probs=138.2
Q ss_pred ccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccccc
Q 043450 330 KLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGK 409 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~ 409 (561)
.+..+..++++. +.++.++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..
T Consensus 17 ~l~~l~~l~l~~---------~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNLGK---------QSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKD 83 (263)
T ss_dssp HHHHHHHHHHTC---------SCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTT
T ss_pred HHHHHHHHHhcC---------CCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hcc
Confidence 466677778888 7788877 5889999999999999999988 78999999999999998 888887 999
Q ss_pred CCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccc
Q 043450 410 LKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLY 489 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~ 489 (561)
+++|++|++++|. +..+|.... ++|++|+ +.+|.+.+ +..+..++.|+.|++++..- .. . ..+.
T Consensus 84 l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~--L~~N~l~~-----~~~l~~l~~L~~L~Ls~N~i-~~---~--~~l~ 147 (263)
T 1xeu_A 84 LTKLEELSVNRNR-LKNLNGIPS--ACLSRLF--LDNNELRD-----TDSLIHLKNLEILSIRNNKL-KS---I--VMLG 147 (263)
T ss_dssp CSSCCEEECCSSC-CSCCTTCCC--SSCCEEE--CCSSCCSB-----SGGGTTCTTCCEEECTTSCC-CB---C--GGGG
T ss_pred CCCCCEEECCCCc-cCCcCcccc--CcccEEE--ccCCccCC-----ChhhcCcccccEEECCCCcC-CC---C--hHHc
Confidence 9999999999998 666775433 8999998 66666532 34577788888888876431 22 1 2578
Q ss_pred cccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCCh
Q 043450 490 NKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPK 547 (561)
Q Consensus 490 ~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~ 547 (561)
.+++|+.|++++|.+... ..+..+++|+.|++++|.+...|.
T Consensus 148 ~l~~L~~L~L~~N~i~~~----------------~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT----------------GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GCTTCCEEECTTSCCCBC----------------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred cCCCCCEEECCCCcCcch----------------HHhccCCCCCEEeCCCCcccCCcc
Confidence 899999999999985431 567889999999999999766553
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=7.3e-13 Score=132.86 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=98.0
Q ss_pred cEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccccc-cc-CCCCccEEecCCCCCcCccC-cccccCC
Q 043450 335 RALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPET-LC-ELYNLQKLDIRRCQDLRELP-TGIGKLK 411 (561)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~-~L~~L~~L~l~~~~~~~~lp-~~~~~l~ 411 (561)
+++++++ +.++.+|..+. ..+++|+|++|.++.+|.. +. ++++|++|+|++|. +..+| ..+..++
T Consensus 21 ~~l~c~~---------~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSK---------QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVP 88 (361)
T ss_dssp TEEECCS---------SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred CEEEeCC---------CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCC
Confidence 5778887 77888887665 4688999999999887755 44 88999999999988 66665 4688899
Q ss_pred CCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhccccc
Q 043450 412 NMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYN 490 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 490 (561)
+|++|++++|. +..+|. .+..+++|++|+ +.+|.+....+.. +..++.|+.|.+.+.. +..........+..
T Consensus 89 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~--L~~N~i~~~~~~~---~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 89 NLRYLDLSSNH-LHTLDEFLFSDLQALEVLL--LYNNHIVVVDRNA---FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNK 161 (361)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEE--CCSSCCCEECTTT---TTTCTTCCEEECCSSC-CCSCCGGGTC----
T ss_pred CCCEEECCCCc-CCcCCHHHhCCCcCCCEEE--CCCCcccEECHHH---hCCcccCCEEECCCCc-CCeeCHHHhcCccc
Confidence 99999999988 455544 578888899887 5666553322222 3334444444444321 11111111111145
Q ss_pred ccccccEEEEeecCC
Q 043450 491 KKNLLRLGLQFGRVA 505 (561)
Q Consensus 491 l~~L~~L~l~~~~~~ 505 (561)
+++|+.|+|++|.+.
T Consensus 162 l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 162 LPKLMLLDLSSNKLK 176 (361)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCcCCEEECCCCCCC
Confidence 666777777666643
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=2.6e-13 Score=135.60 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHh-hcCCCCCCCceEEEeecCCCCCChhhhcccCCcEEE
Q 043450 520 EQLL-EALQPPVNVEELWIVYYGGNIFPKWLTLLTNLRDLN 559 (561)
Q Consensus 520 ~~~~-~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 559 (561)
..++ +.+..+++|+.|++++|.++.+|.+. +.+|++|.
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~ 229 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLR 229 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEE
T ss_pred cCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhh
Confidence 3344 35688899999999999999998753 44555444
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=3e-13 Score=145.30 Aligned_cols=206 Identities=13% Similarity=0.008 Sum_probs=136.2
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCcccccc-----cCccccccCccCEEecCCCCCc-----cccccccCCCCccE
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLIRE-----IPENVEKLIHLKYLNLSGLRIE-----SLPETLCELYNLQK 391 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~ 391 (561)
..++....++++|++|+|++| .+.. ++.....+++|++|++++|.++ .++..+.++++|++
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~---------~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEES---------SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTC---------EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHhhCCCCCEEECccc---------cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 345555668889999999884 3322 2333456788999999988875 45566778899999
Q ss_pred EecCCCCCcCccCcccccCCCCCeEEcCCCCCC---ccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCc
Q 043450 392 LDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSL---KYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRE 468 (561)
Q Consensus 392 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 468 (561)
|++++|. +..+|..+..+++|++|+++.+... ...+..++.+++|+.|+ +... .....+ ..+..+++|+.
T Consensus 225 L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~--l~~~-~~~~l~---~~~~~~~~L~~ 297 (592)
T 3ogk_B 225 VKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG--LSYM-GPNEMP---ILFPFAAQIRK 297 (592)
T ss_dssp EECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE--ETTC-CTTTGG---GGGGGGGGCCE
T ss_pred EeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC--cccc-chhHHH---HHHhhcCCCcE
Confidence 9999987 6678888888999999998754422 23445667777888775 3222 111112 23445667778
Q ss_pred eEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEee---------
Q 043450 469 CRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVY--------- 539 (561)
Q Consensus 469 l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~--------- 539 (561)
|+++++. + ........+..+++|+.|+++ +. .....++.....+++|++|++++
T Consensus 298 L~Ls~~~-l--~~~~~~~~~~~~~~L~~L~L~-~~-------------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 298 LDLLYAL-L--ETEDHCTLIQKCPNLEVLETR-NV-------------IGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp EEETTCC-C--CHHHHHHHHTTCTTCCEEEEE-GG-------------GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred EecCCCc-C--CHHHHHHHHHhCcCCCEEecc-Cc-------------cCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 8887654 2 123333446788999999998 32 12334444445678899999994
Q ss_pred -c-CCCC--CChhhhcccCCcEEEc
Q 043450 540 -Y-GGNI--FPKWLTLLTNLRDLNL 560 (561)
Q Consensus 540 -~-~~~~--lp~~~~~l~~L~~L~L 560 (561)
+ .++. ++.....+++|+.|+|
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEe
Confidence 3 3321 3333467999999987
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=1.2e-12 Score=122.29 Aligned_cols=111 Identities=28% Similarity=0.447 Sum_probs=85.4
Q ss_pred HHHhccccccEEeccCCCCCCCCCcccccccCcc-ccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCcc
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIREIPEN-VEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~l 403 (561)
..+..+.+|++|+|++ |.++.+|.. +..+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+
T Consensus 58 ~~~~~l~~L~~L~L~~---------N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~l 127 (229)
T 3e6j_A 58 GVFDSLINLKELYLGS---------NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTEL 127 (229)
T ss_dssp TTTTTCTTCCEEECCS---------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSC
T ss_pred HHhhCccCCcEEECCC---------CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-cccc
Confidence 3466788888888888 677777654 57788888888888888877654 5788888888888887 7788
Q ss_pred CcccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCcc
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~ 449 (561)
|..+..+++|++|++++|. +..+|. .+..+++|+.|+ +.+|.+
T Consensus 128 p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~--l~~N~~ 171 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAY--LFGNPW 171 (229)
T ss_dssp CTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE--CTTSCB
T ss_pred CcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEE--eeCCCc
Confidence 8888888888888888887 555553 477788888886 556655
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=4.7e-13 Score=133.73 Aligned_cols=196 Identities=18% Similarity=0.103 Sum_probs=93.2
Q ss_pred HhccccccEEeccCCCCCCCCCcccc-cccCc-cccccCccCE-EecCCCCCcccc-ccccCCCCccEEecCCCCCcCcc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLI-REIPE-NVEKLIHLKY-LNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLREL 403 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~lp~-~~~~l~~L~~-L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~l 403 (561)
|.++++|++|+|++ |.+ +.+|. .|..++++.+ +.+.+|+++.+| ..+..+++|++|++++|. +..+
T Consensus 50 f~~l~~L~~L~Ls~---------N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~ 119 (350)
T 4ay9_X 50 FSGFGDLEKIEISQ---------NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHL 119 (350)
T ss_dssp STTCTTCCEEEEEC---------CTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSC
T ss_pred HcCCCCCCEEECcC---------CCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccC
Confidence 45556666666665 333 33332 3445555443 344445555553 335556666666666655 4444
Q ss_pred Cc-ccccCCCCCeEEcCCCCCCccCccc-ccCCc-CCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCc
Q 043450 404 PT-GIGKLKNMRSLLNGDTSSLKYLPIG-ISRLT-SLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHV 480 (561)
Q Consensus 404 p~-~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~-~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~ 480 (561)
|. .+....++..|++.++..+..+|.. +..+. .++.|+ +.+|.+....+..+ . ..+|..+.+... +..
T Consensus 120 ~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~--L~~N~i~~i~~~~f-~---~~~L~~l~l~~~---n~l 190 (350)
T 4ay9_X 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW--LNKNGIQEIHNSAF-N---GTQLDELNLSDN---NNL 190 (350)
T ss_dssp CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE--CCSSCCCEECTTSS-T---TEEEEEEECTTC---TTC
T ss_pred Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhc--cccccccCCChhhc-c---ccchhHHhhccC---Ccc
Confidence 33 3334445555555554444544432 33332 344444 33443321111111 1 112222333221 111
Q ss_pred chhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecC-CCCCChhhhcccCCcEEE
Q 043450 481 DEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYG-GNIFPKWLTLLTNLRDLN 559 (561)
Q Consensus 481 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~ 559 (561)
.......|.++++|+.|++++|++... |. ..+.+|+.|.+.++. ...+| .+.+|++|+.++
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~~l---------------p~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~ 252 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIHSL---------------PS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEAS 252 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCCCC---------------CS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEE
T ss_pred cCCCHHHhccCcccchhhcCCCCcCcc---------------Ch--hhhccchHhhhccCCCcCcCC-CchhCcChhhCc
Confidence 222223466777778888877764332 22 124556666655444 55666 366777777776
Q ss_pred c
Q 043450 560 L 560 (561)
Q Consensus 560 L 560 (561)
+
T Consensus 253 l 253 (350)
T 4ay9_X 253 L 253 (350)
T ss_dssp C
T ss_pred C
Confidence 5
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=121.51 Aligned_cols=111 Identities=25% Similarity=0.239 Sum_probs=85.5
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCc-cccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPE-NVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT 405 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~ 405 (561)
+..+.+|++|++++ |.++.++. .+..+++|++|++++|.++.+|+ .+..+++|++|++++|......|.
T Consensus 53 ~~~l~~L~~L~L~~---------N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 53 FKKLPQLRKINFSN---------NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp GGGCTTCCEEECCS---------SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred hccCCCCCEEECCC---------CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence 56788888888888 67777754 67888888888888888887765 478888888888888883333466
Q ss_pred ccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCcc
Q 043450 406 GIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 406 ~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~ 449 (561)
.+..+++|++|++++|...+..|..++.+++|++|+ +.+|.+
T Consensus 124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~l 165 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN--LLANPF 165 (220)
T ss_dssp SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE--CCSCCE
T ss_pred HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE--ecCcCC
Confidence 788888888888888885454477788888888887 556655
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=1.1e-12 Score=121.59 Aligned_cols=110 Identities=27% Similarity=0.365 Sum_probs=79.2
Q ss_pred HHhccccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCcc-
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLREL- 403 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~l- 403 (561)
.|..+.+|++|+|++ |.+..+ |..|..+++|++|+|++|.++.+|.. +..+++|++|+|++|. +..+
T Consensus 51 ~~~~l~~L~~L~Ls~---------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~ 120 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSN---------NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLR 120 (220)
T ss_dssp SSTTCTTCCEEECCS---------SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred HhhCCCCCCEEECCC---------CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeC
Confidence 356677888888887 666666 66677888888888888888877765 4678888888888887 4444
Q ss_pred CcccccCCCCCeEEcCCCCCCccCc-ccccCCcCCcccCceeecCcc
Q 043450 404 PTGIGKLKNMRSLLNGDTSSLKYLP-IGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~ 449 (561)
|..+..+++|++|++++|. +..+| ..+..+++|++|+ +.+|.+
T Consensus 121 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~--L~~N~~ 164 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMH--LAQNPF 164 (220)
T ss_dssp TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE--CCSSCE
T ss_pred HHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEE--eCCCCc
Confidence 5567788888888888887 44444 3477777888776 555544
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.2e-12 Score=120.36 Aligned_cols=109 Identities=33% Similarity=0.496 Sum_probs=64.4
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCcc-ccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPEN-VEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT 405 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~ 405 (561)
+..+.+|++|++++ +.++.+|.. +..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|.
T Consensus 48 ~~~l~~L~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 117 (208)
T 2o6s_A 48 FDELTSLTQLYLGG---------NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPD 117 (208)
T ss_dssp TTTCTTCSEEECCS---------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred hcccccCcEEECCC---------CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCH
Confidence 44566666666666 555555543 35666666666666666655543 4566666666666665 444444
Q ss_pred -ccccCCCCCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCcc
Q 043450 406 -GIGKLKNMRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 406 -~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~ 449 (561)
.+..+++|++|++++|. +..+|.. ++.+++|+.|+ +.+|.+
T Consensus 118 ~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~--l~~N~~ 160 (208)
T 2o6s_A 118 GVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW--LHDNPW 160 (208)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE--CCSCCB
T ss_pred hHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEE--ecCCCe
Confidence 35666666666666665 3344433 56666666665 444443
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=118.99 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=101.4
Q ss_pred cEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccc--cccCCCCccEEecCCCCCcCccCc-ccccCC
Q 043450 335 RALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPE--TLCELYNLQKLDIRRCQDLRELPT-GIGKLK 411 (561)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~ 411 (561)
+.+++++ +.++.+|..+. ..+++|++++|.++.+++ .+..+++|++|++++|. +..+|. .+..++
T Consensus 14 ~~l~~s~---------n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~ 81 (220)
T 2v70_A 14 TTVDCSN---------QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGAS 81 (220)
T ss_dssp TEEECCS---------SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred CEeEeCC---------CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCC
Confidence 4778887 77888887664 356788888888887743 37888888888888887 666654 688888
Q ss_pred CCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccc
Q 043450 412 NMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 491 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l 491 (561)
+|++|++++|......|..++.+++|++|+ +.+|.+.+..+..+. .+++|+.|++.+. ......+..+..+
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N----~l~~~~~~~~~~l 152 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLM--LRSNRITCVGNDSFI---GLSSVRLLSLYDN----QITTVAPGAFDTL 152 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEE--CTTSCCCCBCTTSST---TCTTCSEEECTTS----CCCCBCTTTTTTC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEE--CCCCcCCeECHhHcC---CCccCCEEECCCC----cCCEECHHHhcCC
Confidence 888888888884444444578888888887 666666444343333 4444555555442 2223334556677
Q ss_pred cccccEEEEeecC
Q 043450 492 KNLLRLGLQFGRV 504 (561)
Q Consensus 492 ~~L~~L~l~~~~~ 504 (561)
++|+.|++++|.+
T Consensus 153 ~~L~~L~L~~N~l 165 (220)
T 2v70_A 153 HSLSTLNLLANPF 165 (220)
T ss_dssp TTCCEEECCSCCE
T ss_pred CCCCEEEecCcCC
Confidence 7788888877764
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=3.3e-12 Score=118.51 Aligned_cols=148 Identities=17% Similarity=0.233 Sum_probs=93.7
Q ss_pred cEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCcc-CcccccCCC
Q 043450 335 RALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLREL-PTGIGKLKN 412 (561)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~l-p~~~~~l~~ 412 (561)
+.+++++ +.++.+|..+. ++|++|++++|.++.+|+ .+..+++|++|++++|. +..+ |..+..+++
T Consensus 14 ~~v~c~~---------~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 14 NIVDCRG---------KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRS 81 (220)
T ss_dssp TEEECTT---------SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSS
T ss_pred CEEEcCC---------CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcC
Confidence 4566666 66777777654 578888888888877664 57778888888888877 4444 667788888
Q ss_pred CCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcccccc
Q 043450 413 MRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQLYNK 491 (561)
Q Consensus 413 L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l 491 (561)
|++|++++|. +..+|.. ++.+++|++|+ +.+|.+.+..+..+ ..++.|+.|++.+. ......+..+..+
T Consensus 82 L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~--L~~N~l~~~~~~~~---~~l~~L~~L~L~~N----~l~~~~~~~~~~l 151 (220)
T 2v9t_B 82 LNSLVLYGNK-ITELPKSLFEGLFSLQLLL--LNANKINCLRVDAF---QDLHNLNLLSLYDN----KLQTIAKGTFSPL 151 (220)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTTT---TTCTTCCEEECCSS----CCSCCCTTTTTTC
T ss_pred CCEEECCCCc-CCccCHhHccCCCCCCEEE--CCCCCCCEeCHHHc---CCCCCCCEEECCCC----cCCEECHHHHhCC
Confidence 8888888877 5566654 47778888877 55665543333323 33344444444432 1122222345566
Q ss_pred cccccEEEEeecC
Q 043450 492 KNLLRLGLQFGRV 504 (561)
Q Consensus 492 ~~L~~L~l~~~~~ 504 (561)
++|+.|++++|.+
T Consensus 152 ~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 152 RAIQTMHLAQNPF 164 (220)
T ss_dssp TTCCEEECCSSCE
T ss_pred CCCCEEEeCCCCc
Confidence 6677777766653
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=5.5e-12 Score=117.78 Aligned_cols=93 Identities=26% Similarity=0.360 Sum_probs=52.8
Q ss_pred ccccccCccccccCccCEEecCCCCCccc-cccccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCCCCccCc
Q 043450 351 NLIREIPENVEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTSSLKYLP 428 (561)
Q Consensus 351 ~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp 428 (561)
+.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|
T Consensus 29 ~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~ 104 (229)
T 3e6j_A 29 KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLP 104 (229)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccC
Confidence 55566665443 5666666666666644 4445666666666666665 455543 34566666666666665 33443
Q ss_pred cc-ccCCcCCcccCceeecCcc
Q 043450 429 IG-ISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 429 ~~-i~~l~~L~~L~~~~~~~~~ 449 (561)
.. ++.+++|++|+ +.+|.+
T Consensus 105 ~~~~~~l~~L~~L~--Ls~N~l 124 (229)
T 3e6j_A 105 SAVFDRLVHLKELF--MCCNKL 124 (229)
T ss_dssp TTTTTTCTTCCEEE--CCSSCC
T ss_pred hhHhCcchhhCeEe--ccCCcc
Confidence 33 45666666665 444443
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=2.4e-12 Score=138.17 Aligned_cols=205 Identities=16% Similarity=0.077 Sum_probs=150.3
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCccccc-----ccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCC
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIR-----EIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 398 (561)
++.....+++|++|++++ +.+. .++..+..+++|++|++++|.+..+|..+..+++|+.|+++++.
T Consensus 184 l~~~~~~~~~L~~L~L~~---------n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYM---------TEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp HHHHHHHCCCCCEEECTT---------CCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCC
T ss_pred HHHHHhcCCCccEEEeec---------cCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccc
Confidence 566678899999999998 4443 45555678899999999999999999999999999999998644
Q ss_pred Cc---CccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCc-hhhhccCCCCceEEcCC
Q 043450 399 DL---RELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRL-ESLKNLQLLRECRVEGL 474 (561)
Q Consensus 399 ~~---~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~-~~l~~L~~L~~l~i~~~ 474 (561)
.. ...+..+..+++|+.|+++++. ...+|..+..+++|+.|+ +.++... ...+ .-+..+++|+.|.+..
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~--Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~- 327 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLD--LLYALLE---TEDHCTLIQKCPNLEVLETRN- 327 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEE--ETTCCCC---HHHHHHHHTTCTTCCEEEEEG-
T ss_pred cccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEe--cCCCcCC---HHHHHHHHHhCcCCCEEeccC-
Confidence 23 3445578889999999999865 677888889999999998 5555431 1122 2256778888888862
Q ss_pred CCCCCcchhhhcccccccccccEEEEe-----------ecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 475 SNVSHVDEAERLQLYNKKNLLRLGLQF-----------GRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 475 ~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
..........+..+++|+.|+++. +.+ ....+......+++|++|++.++.++
T Consensus 328 ---~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 328 ---VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV-------------SQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp ---GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-------------CHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred ---ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc-------------CHHHHHHHHhhCccCeEEEeecCCcc
Confidence 122344445557789999999993 221 13334433455799999999888765
Q ss_pred C-CChhhh-cccCCcEEEc
Q 043450 544 I-FPKWLT-LLTNLRDLNL 560 (561)
Q Consensus 544 ~-lp~~~~-~l~~L~~L~L 560 (561)
. .+..+. .+++|+.|+|
T Consensus 392 ~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHhhCCCCcEEEE
Confidence 2 344554 4999999987
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.3e-12 Score=113.30 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=92.2
Q ss_pred hccccccEEeccCCCCCCCCCccccc--ccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcc
Q 043450 329 SKLACLRALVISQPSPIFRPDLNLIR--EIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 329 ~~l~~L~~L~l~~~~~~~~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
....+|+.|++++ +.+. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..
T Consensus 14 ~~~~~l~~L~l~~---------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 14 RTPSDVKELVLDN---------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp CCGGGCSEEECTT---------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CCCccCeEEEccC---------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 3467899999999 6676 7888889999999999999999887 77999999999999999944448888
Q ss_pred cccCCCCCeEEcCCCCCCccCc--ccccCCcCCcccCceeecCccC
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLP--IGISRLTSLRTLEKFVVGGGVD 450 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~~~~~~~~~~ 450 (561)
++.+++|++|++++|. +..+| ..++.+++|++|+ +.+|.+.
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~--l~~N~l~ 126 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLD--LFNCEVT 126 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEE--CTTCGGG
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEe--CcCCccc
Confidence 8889999999999998 55554 7789999999998 6666653
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=1.9e-12 Score=114.69 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=90.4
Q ss_pred ccccccEEeccCCCCCCCCCccccc--ccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 330 KLACLRALVISQPSPIFRPDLNLIR--EIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
...+|++|++++ +.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+
T Consensus 22 ~~~~L~~L~l~~---------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDN---------CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCS---------CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCC---------CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 457899999999 6676 8888889999999999999999887 789999999999999998444478878
Q ss_pred ccCCCCCeEEcCCCCCCccCc--ccccCCcCCcccCceeecCcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLP--IGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~~~~~~~~~ 449 (561)
+.+++|++|++++|. +..+| ..++.+++|++|+ +.+|.+
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~--l~~N~l 132 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLD--LFNCEV 132 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEE--CCSSGG
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEE--eeCCcC
Confidence 889999999999998 66665 6788889999887 555554
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.6e-12 Score=113.83 Aligned_cols=102 Identities=25% Similarity=0.247 Sum_probs=62.3
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcc-ccccccCCCCccEEecCCCCCcCccC--
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIES-LPETLCELYNLQKLDIRRCQDLRELP-- 404 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~lp-- 404 (561)
+..+++|++|++++ |.+..+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|. +..+|
T Consensus 45 ~~~l~~L~~L~l~~---------n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 113 (168)
T 2ell_A 45 TAEFVNLEFLSLIN---------VGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTL 113 (168)
T ss_dssp CGGGGGCCEEEEES---------SCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGG
T ss_pred HHhCCCCCEEeCcC---------CCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhH
Confidence 34556666666666 445544 455666666666666666664 55555556666666666665 55554
Q ss_pred cccccCCCCCeEEcCCCCCCccCcc----cccCCcCCcccC
Q 043450 405 TGIGKLKNMRSLLNGDTSSLKYLPI----GISRLTSLRTLE 441 (561)
Q Consensus 405 ~~~~~l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~ 441 (561)
..+..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 114 ~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEET
T ss_pred HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEec
Confidence 456666666666666666 444444 556666666666
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=5e-12 Score=133.90 Aligned_cols=72 Identities=26% Similarity=0.449 Sum_probs=35.3
Q ss_pred cCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCcccccCCcCCcccC
Q 043450 366 LKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLE 441 (561)
Q Consensus 366 L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 441 (561)
|++|++++|.++.+|. ++.+++|+.|++++|. +..+|..++.+++|+.|++++|. +..+| .++++++|++|+
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELL 514 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEE
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEE
Confidence 4455555555544443 4455555555555544 44445455555555555555544 33344 444555555554
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=1.7e-12 Score=112.41 Aligned_cols=103 Identities=26% Similarity=0.264 Sum_probs=90.1
Q ss_pred HHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcc-ccccccCCCCccEEecCCCCCcCccC-
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIES-LPETLCELYNLQKLDIRRCQDLRELP- 404 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~lp- 404 (561)
.+..+++|++|++++ |.+..+ ..++.+++|++|++++|.++. +|..++.+++|++|++++|. +..+|
T Consensus 37 ~~~~l~~L~~L~l~~---------n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~ 105 (149)
T 2je0_A 37 LTDEFEELEFLSTIN---------VGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLST 105 (149)
T ss_dssp CCTTCTTCCEEECTT---------SCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHH
T ss_pred HHhhcCCCcEEECcC---------CCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHH
Confidence 357789999999999 667777 678999999999999999987 88888889999999999998 77765
Q ss_pred -cccccCCCCCeEEcCCCCCCccCcc----cccCCcCCcccC
Q 043450 405 -TGIGKLKNMRSLLNGDTSSLKYLPI----GISRLTSLRTLE 441 (561)
Q Consensus 405 -~~~~~l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~ 441 (561)
..++.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 106 ~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp HGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred HHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 789999999999999998 566665 688999999987
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=3.7e-12 Score=113.70 Aligned_cols=97 Identities=26% Similarity=0.261 Sum_probs=59.7
Q ss_pred cccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccc-cCCCCccEEecCCCCCcCccCc--cccc
Q 043450 333 CLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETL-CELYNLQKLDIRRCQDLRELPT--GIGK 409 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~--~~~~ 409 (561)
+|++|++++ |.++.+ +.++.+++|++|++++|.++.+|+.+ +.+++|++|++++|. +..+|. .++.
T Consensus 43 ~L~~L~Ls~---------N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~ 111 (176)
T 1a9n_A 43 QFDAIDFSD---------NEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLAS 111 (176)
T ss_dssp CCSEEECCS---------SCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGG
T ss_pred CCCEEECCC---------CCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhc
Confidence 666666666 455555 44566666666666666666665443 666666666666665 555655 5666
Q ss_pred CCCCCeEEcCCCCCCccCccc----ccCCcCCcccC
Q 043450 410 LKNMRSLLNGDTSSLKYLPIG----ISRLTSLRTLE 441 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L~ 441 (561)
+++|++|++++|. +..+|.. ++.+++|+.|+
T Consensus 112 l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 112 LKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred CCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeC
Confidence 6666666666666 4455543 56666666665
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=7.3e-12 Score=125.56 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=115.8
Q ss_pred ccccEEeccCCCCCCCCCcccccccCcc-cc-ccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCccCc-cc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPEN-VE-KLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLRELPT-GI 407 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~~ 407 (561)
..+++|+|++ |.++.++.. +. .+++|++|+|++|.|+.+| ..+.++++|++|+|++|. +..+|. .+
T Consensus 39 ~~l~~L~Ls~---------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 39 SYTALLDLSH---------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp TTCSEEECCS---------SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred CCCCEEECCC---------CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHh
Confidence 4588999999 778888655 44 8999999999999999876 468999999999999998 677655 68
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCCCCcchhhhcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNVSHVDEAERLQ 487 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~~~~~~~~~~~ 487 (561)
..+++|+.|++++|......|..++.+++|+.|+ +.+|.+.......+..+..++.|+.|++.+.. ........
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~--L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~----l~~l~~~~ 182 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY--LSQNQISRFPVELIKDGNKLPKLMLLDLSSNK----LKKLPLTD 182 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE--CCSSCCCSCCGGGTC----CTTCCEEECCSSC----CCCCCHHH
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEE--CCCCcCCeeCHHHhcCcccCCcCCEEECCCCC----CCccCHHH
Confidence 8999999999999995555577889999999998 77777654444444444667778888876532 22222334
Q ss_pred cccccc--cccEEEEeecC
Q 043450 488 LYNKKN--LLRLGLQFGRV 504 (561)
Q Consensus 488 l~~l~~--L~~L~l~~~~~ 504 (561)
+..++. |+.|+|++|.+
T Consensus 183 ~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHSCHHHHTTEECCSSCE
T ss_pred hhhccHhhcceEEecCCCc
Confidence 555555 48899988764
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1e-12 Score=143.58 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=95.9
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCccc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTGI 407 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~~ 407 (561)
+..+.+|++|+|++ |.+..+|..|+.|++|++|+|++|.|+.+|..|++|++|++|+|++|. ++.+|..|
T Consensus 243 ~~~l~~L~~L~Ls~---------N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~ 312 (727)
T 4b8c_D 243 IFKYDFLTRLYLNG---------NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEF 312 (727)
T ss_dssp GGGCCSCSCCBCTT---------SCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSST
T ss_pred hcCCCCCCEEEeeC---------CcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhh
Confidence 44789999999999 788899999999999999999999999999999999999999999998 78999999
Q ss_pred ccCCCCCeEEcCCCCCCccCcccccCCcCC-cccCceeecCccCCCCcc
Q 043450 408 GKLKNMRSLLNGDTSSLKYLPIGISRLTSL-RTLEKFVVGGGVDGNNTC 455 (561)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L-~~L~~~~~~~~~~~~~~~ 455 (561)
+.+++|++|++++|...+.+|..++.+... ..|+ +.+|.+.+..+.
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~--l~~N~l~~~~p~ 359 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY--LRDNRPEIPLPH 359 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH--HHHCCCCCCCCC
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh--hccCcccCcCcc
Confidence 999999999999999766777666544221 1222 455555444444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=6.3e-12 Score=112.23 Aligned_cols=107 Identities=20% Similarity=0.249 Sum_probs=89.1
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccCccccccC-ccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLI-HLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
+..+.+|+.|++++ +.+..+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|. +..+|+.
T Consensus 15 ~~~~~~L~~L~l~~---------n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~ 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRG---------YKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEG 82 (176)
T ss_dssp EECTTSCEEEECTT---------SCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSC
T ss_pred cCCcCCceEEEeeC---------CCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcc
Confidence 45678899999999 67777765 55555 999999999999887 678999999999999998 7788765
Q ss_pred c-ccCCCCCeEEcCCCCCCccCcc--cccCCcCCcccCceeecCcc
Q 043450 407 I-GKLKNMRSLLNGDTSSLKYLPI--GISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 407 ~-~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~~~~~~~~~ 449 (561)
+ +.+++|++|++++|. ++.+|. .++.+++|+.|+ +.+|.+
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~--l~~N~i 125 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLC--ILRNPV 125 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEE--CCSSGG
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEE--ecCCCC
Confidence 5 899999999999998 677886 788888899887 556554
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.20 E-value=1.5e-11 Score=131.92 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=47.9
Q ss_pred hHHHHHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCC-------CccccccccCCCCccEE-e
Q 043450 322 SILRELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLR-------IESLPETLCELYNLQKL-D 393 (561)
Q Consensus 322 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~-------l~~lp~~i~~L~~L~~L-~ 393 (561)
..+......+++|++|++++| ..++.+|..+..+++|++|++..+. +..++..+.++++|+.| .
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~--------~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~ 272 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRA--------VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTT--------SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred HHHHHHHHhCCCCcEEecCCC--------CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC
Confidence 344555556677777777764 2344455556666666666644432 23344445555555555 3
Q ss_pred cCCCCCcCccCcccccCCCCCeEEcCCCC
Q 043450 394 IRRCQDLRELPTGIGKLKNMRSLLNGDTS 422 (561)
Q Consensus 394 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 422 (561)
+.+.. ...+|..+..+++|++|++++|.
T Consensus 273 ~~~~~-~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 273 FWDAV-PAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp CBTCC-GGGGGGGHHHHTTCCEEECTTCC
T ss_pred Ccccc-hhhHHHHHHhhCCCCEEEccCCC
Confidence 33322 23344444445555555555555
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=3.3e-11 Score=109.14 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=68.6
Q ss_pred cEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccccc--ccCCCCccEEecCCCCCcCccCcccccCCC
Q 043450 335 RALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPET--LCELYNLQKLDIRRCQDLRELPTGIGKLKN 412 (561)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~ 412 (561)
+++++++ +.++.+|..+.. +|++|++++|.++.+|+. ++.+++|++|++++|......|..++.+++
T Consensus 11 ~~l~~s~---------~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTG---------RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTT---------SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCC---------CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 5677777 667777766543 777777777777766653 677777777777777733333667777777
Q ss_pred CCeEEcCCCCCCccCcccccCCcCCcccCceeecCcc
Q 043450 413 MRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 413 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~ 449 (561)
|++|++++|...+..|..++.+++|++|+ +.+|.+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--L~~N~l 114 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLN--LYDNQI 114 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEE--CCSSCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEE--CCCCcC
Confidence 77777777774444444467777777776 555554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=6.2e-11 Score=107.34 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=73.9
Q ss_pred cEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccC-cccccCCCC
Q 043450 335 RALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELP-TGIGKLKNM 413 (561)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~l~~L 413 (561)
+++++++ +.++.+|..+. .+|++|++++|.++.+|..+..+++|++|++++|. +..++ ..+..+++|
T Consensus 13 ~~l~~~~---------~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSN---------KGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTT---------SCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CEEEcCC---------CCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCC
Confidence 4677777 67777776654 57888888888888888788888888888888887 55554 467888888
Q ss_pred CeEEcCCCCCCccCcccccCCcCCcccCceeecCcc
Q 043450 414 RSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 414 ~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~ 449 (561)
++|++++|......|..++.+++|++|+ +.+|.+
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~--L~~N~l 114 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLS--LHGNDI 114 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEE--CCSSCC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEE--CCCCCC
Confidence 8888888874443344577888888887 555554
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.19 E-value=3.2e-12 Score=137.32 Aligned_cols=61 Identities=16% Similarity=-0.035 Sum_probs=32.9
Q ss_pred ccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEee
Q 043450 462 NLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVY 539 (561)
Q Consensus 462 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~ 539 (561)
.+++|+.|++.++. +. .......+..+++|+.|+++.|. ....+......+++|+.|++.+
T Consensus 287 ~~~~L~~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~--------------~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI--------------EDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HHTTCCEEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG--------------HHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhCCCCEEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc--------------CHHHHHHHHHhCCCCCEEEEec
Confidence 45666666666544 22 22233335567777777777542 1222222223467788888854
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=8e-11 Score=106.56 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=92.8
Q ss_pred cccEEeccCCCCCCCCCcccccccCcc--ccccCccCEEecCCCCCccc-cccccCCCCccEEecCCCCCcCccC-cccc
Q 043450 333 CLRALVISQPSPIFRPDLNLIREIPEN--VEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRRCQDLRELP-TGIG 408 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~lp~~--~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp-~~~~ 408 (561)
+|++|++++ |.++.+|.. ++.+++|++|++++|.++.+ |..++++++|++|++++|. +..+| ..+.
T Consensus 30 ~l~~L~l~~---------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 99 (192)
T 1w8a_A 30 HTTELLLND---------NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFL 99 (192)
T ss_dssp TCSEEECCS---------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSST
T ss_pred CCCEEECCC---------CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhc
Confidence 799999999 788888764 89999999999999999976 6789999999999999999 66655 4589
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecCccC
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGGGVD 450 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~ 450 (561)
.+++|++|++++|...+..|..++.+++|++|+ +.+|.+.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~ 139 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN--LASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE--CTTCCBC
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE--eCCCCcc
Confidence 999999999999996667788899999999998 6677664
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.5e-10 Score=104.83 Aligned_cols=105 Identities=22% Similarity=0.362 Sum_probs=91.6
Q ss_pred ccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCccC-ccccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLRELP-TGIGK 409 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~ 409 (561)
.+|++|++++ |.++.+|..+..+++|++|++++|.++.++ ..|.++++|++|+|++|. +..+| ..+..
T Consensus 31 ~~l~~L~L~~---------n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~ 100 (193)
T 2wfh_A 31 RDVTELYLDG---------NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDG 100 (193)
T ss_dssp TTCCEEECCS---------SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTT
T ss_pred CCCCEEECCC---------CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCC
Confidence 4799999999 889999999999999999999999999886 468999999999999999 66665 47999
Q ss_pred CCCCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCcc
Q 043450 410 LKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 410 l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~ 449 (561)
+++|++|++++|. +..+|. .+..+++|+.|+ +.+|.+
T Consensus 101 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~--L~~N~~ 138 (193)
T 2wfh_A 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLA--IGANPL 138 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE--CCSSCE
T ss_pred CCCCCEEECCCCC-CCeeChhhhhcCccccEEE--eCCCCe
Confidence 9999999999998 666766 478899999997 666655
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=2.9e-10 Score=101.00 Aligned_cols=100 Identities=26% Similarity=0.362 Sum_probs=85.8
Q ss_pred cEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccc-cccccCCCCccEEecCCCCCcCccCcc-cccCCC
Q 043450 335 RALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRRCQDLRELPTG-IGKLKN 412 (561)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~l~~ 412 (561)
+.+++++ +.++.+|..+. ++|++|++++|.++.+ |..++++++|++|+|++|. +..+|.. +..+++
T Consensus 15 ~~l~~~~---------n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQN---------IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCS---------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cEEEeCC---------CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcch
Confidence 6788888 78899998775 8999999999999977 5678999999999999998 7888775 589999
Q ss_pred CCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCcc
Q 043450 413 MRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 413 L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~ 449 (561)
|++|++++|. +..+|.. ++.+++|++|+ +.+|.+
T Consensus 83 L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~--L~~N~~ 117 (174)
T 2r9u_A 83 LTQLDLNDNH-LKSIPRGAFDNLKSLTHIY--LYNNPW 117 (174)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCSEEE--CCSSCB
T ss_pred hhEEECCCCc-cceeCHHHhccccCCCEEE--eCCCCc
Confidence 9999999998 6677765 88999999998 667765
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=1e-12 Score=119.91 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=50.0
Q ss_pred HHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCcc
Q 043450 327 LFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPTG 406 (561)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 406 (561)
.+..+++|++|++++ |.+..+| .++.+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .
T Consensus 43 ~~~~l~~L~~L~ls~---------n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLALST---------NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G 110 (198)
T ss_dssp HHHHTTTCSEEECSE---------EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H
T ss_pred HHhcCCCCCEEECCC---------CCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c
Confidence 344455555555555 4444444 4455555555555555555555444444555555555554 44444 3
Q ss_pred cccCCCCCeEEcCCCCCCccCcc--cccCCcCCcccC
Q 043450 407 IGKLKNMRSLLNGDTSSLKYLPI--GISRLTSLRTLE 441 (561)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~ 441 (561)
++.+++|++|++++|. +..+|. .++.+++|++|+
T Consensus 111 ~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 4455555555555554 333322 344444555444
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=1.5e-12 Score=118.65 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=108.8
Q ss_pred CCCCCcccccccCceeEEEEccCCCCCcchhhhhhhhhhhhhhHHHhhhccCCCCCCCCCCCCCCCcchhHHHHHHhccc
Q 043450 253 RGASFPMSFFEFDRLRSLLIYDTSHYNPSLFQSMAISSAYSLVNAVLYLVSSPGLGIDDESPSNPSLNSSILRELFSKLA 332 (561)
Q Consensus 253 ~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 332 (561)
..+.++..+..+++|+.|.+.++.. ..++ .+..++
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l--------------------------------------------~~l~-~~~~l~ 70 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNI--------------------------------------------EKIS-SLSGME 70 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEE--------------------------------------------SCCC-CHHHHT
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCC--------------------------------------------cccc-ccccCC
Confidence 4566666888999999999988721 0012 367889
Q ss_pred cccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCc--ccccC
Q 043450 333 CLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPT--GIGKL 410 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~~~~l 410 (561)
+|++|++++ |.+..+|..+..+++|++|++++|.++.+| .++.+++|++|++++|. +..+|. .+..+
T Consensus 71 ~L~~L~l~~---------n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l 139 (198)
T 1ds9_A 71 NLRILSLGR---------NLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAAL 139 (198)
T ss_dssp TCCEEEEEE---------EEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTT
T ss_pred CCCEEECCC---------CCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcC
Confidence 999999999 888899988888999999999999999887 68999999999999998 777664 78999
Q ss_pred CCCCeEEcCCCCCCccCccc----------ccCCcCCcccC
Q 043450 411 KNMRSLLNGDTSSLKYLPIG----------ISRLTSLRTLE 441 (561)
Q Consensus 411 ~~L~~L~l~~~~~~~~lp~~----------i~~l~~L~~L~ 441 (561)
++|++|++++|......|.. +..+++|+.|+
T Consensus 140 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999854444432 67788888776
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=6.4e-10 Score=98.37 Aligned_cols=101 Identities=26% Similarity=0.359 Sum_probs=86.4
Q ss_pred ccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCccc-cccccCCCCccEEecCCCCCcCccCcc-cccCC
Q 043450 334 LRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESL-PETLCELYNLQKLDIRRCQDLRELPTG-IGKLK 411 (561)
Q Consensus 334 L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-~~~l~ 411 (561)
.+++++++ +.++.+|..+. ++|++|++++|.++.+ |..+.++++|++|+|++|. +..+|.. +..++
T Consensus 11 ~~~l~~s~---------n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSG---------KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTT---------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCEEEeCC---------CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCC
Confidence 57899998 88999998774 8999999999999987 5668999999999999998 7777764 68999
Q ss_pred CCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCcc
Q 043450 412 NMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~ 449 (561)
+|++|++++|. +..+|. .++++++|++|+ +.+|.+
T Consensus 79 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~--L~~N~~ 114 (170)
T 3g39_A 79 QLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW--LLNNPW 114 (170)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEE--CCSSCB
T ss_pred CCCEEECCCCc-cCEeCHHHhcCCCCCCEEE--eCCCCC
Confidence 99999999998 566665 489999999998 667766
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=2.3e-09 Score=95.49 Aligned_cols=105 Identities=30% Similarity=0.430 Sum_probs=75.4
Q ss_pred ccccEEeccCCCCCCCCCcccccccCcc-ccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc-ccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREIPEN-VEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT-GIG 408 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~~~ 408 (561)
.+|++|++++ +.++.+|.. ++.+++|++|++++|.++.+|+. +..+++|++|++++|. ++.+|. .+.
T Consensus 28 ~~l~~L~l~~---------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 97 (177)
T 2o6r_A 28 SSATRLELES---------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFD 97 (177)
T ss_dssp TTCSEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEEeCC---------CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhh
Confidence 5678888887 666666654 47778888888888888777654 5778888888888877 556654 357
Q ss_pred cCCCCCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCcc
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~ 449 (561)
.+++|++|++++|. +..+|.. +..+++|++|+ +.+|.+
T Consensus 98 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~--l~~N~~ 136 (177)
T 2o6r_A 98 KLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIW--LHTNPW 136 (177)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE--CCSSCB
T ss_pred CCcccCEEECcCCc-ceEeCHHHhcCCcccCEEE--ecCCCe
Confidence 78888888888877 4556654 46777888776 556655
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=2.5e-09 Score=95.25 Aligned_cols=101 Identities=23% Similarity=0.350 Sum_probs=81.0
Q ss_pred ccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc-ccccCC
Q 043450 334 LRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT-GIGKLK 411 (561)
Q Consensus 334 L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~ 411 (561)
.+.+++++ +.++.+|..+. ++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .++.++
T Consensus 9 ~~~l~~~~---------~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 9 GTEIRCNS---------KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLT 76 (177)
T ss_dssp TTEEECCS---------SCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCEEEecC---------CCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCC
Confidence 46778887 77888886554 6899999999999988764 6889999999999998 677765 468999
Q ss_pred CCCeEEcCCCCCCccCcc-cccCCcCCcccCceeecCcc
Q 043450 412 NMRSLLNGDTSSLKYLPI-GISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 412 ~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~ 449 (561)
+|+.|++++|. +..+|. .++.+++|++|+ +.+|.+
T Consensus 77 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~--l~~N~l 112 (177)
T 2o6r_A 77 KLTILYLHENK-LQSLPNGVFDKLTQLKELA--LDTNQL 112 (177)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEE--CCSSCC
T ss_pred ccCEEECCCCC-ccccCHHHhhCCcccCEEE--CcCCcc
Confidence 99999999998 555555 468889999987 556655
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=1.9e-09 Score=95.62 Aligned_cols=92 Identities=21% Similarity=0.366 Sum_probs=78.9
Q ss_pred ccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCcc-cc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPTG-IG 408 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-~~ 408 (561)
.+|++|++++ |.+..+ |..++.+++|++|+|++|+++.+|.. +.++++|++|+|++|. +..+|.. +.
T Consensus 33 ~~L~~L~Ls~---------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 102 (174)
T 2r9u_A 33 TDKQRLWLNN---------NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFD 102 (174)
T ss_dssp TTCSEEECCS---------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEEeCC---------CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhc
Confidence 6799999999 788888 56789999999999999999999876 5899999999999998 7788775 89
Q ss_pred cCCCCCeEEcCCCCCCccCcccccCC
Q 043450 409 KLKNMRSLLNGDTSSLKYLPIGISRL 434 (561)
Q Consensus 409 ~l~~L~~L~l~~~~~~~~lp~~i~~l 434 (561)
.+++|++|++++|. +...|..+..+
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred cccCCCEEEeCCCC-cccccccHHHH
Confidence 99999999999998 55555544433
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=8.4e-09 Score=91.13 Aligned_cols=81 Identities=22% Similarity=0.405 Sum_probs=73.0
Q ss_pred ccccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCCCcccccc-ccCCCCccEEecCCCCCcCccCc-ccc
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQDLRELPT-GIG 408 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~~~ 408 (561)
.+|++|++++ |.+..+ |..+..+++|++|+|++|+++.+|+. +.++++|++|+|++|. +..+|. .+.
T Consensus 30 ~~l~~L~L~~---------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~ 99 (170)
T 3g39_A 30 TTTQVLYLYD---------NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFD 99 (170)
T ss_dssp TTCSEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred CCCcEEEcCC---------CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhc
Confidence 6799999999 888888 56689999999999999999988876 5899999999999998 777776 589
Q ss_pred cCCCCCeEEcCCCC
Q 043450 409 KLKNMRSLLNGDTS 422 (561)
Q Consensus 409 ~l~~L~~L~l~~~~ 422 (561)
.+++|++|++++|.
T Consensus 100 ~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 100 NLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEEeCCCC
Confidence 99999999999998
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=1.7e-08 Score=100.37 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=57.8
Q ss_pred cccccCccccccCccCEEecCC-CCCcccc-ccccCCCCccEEecCCCCCcCccC-cccccCCCCCeEEcCCCCCCccCc
Q 043450 352 LIREIPENVEKLIHLKYLNLSG-LRIESLP-ETLCELYNLQKLDIRRCQDLRELP-TGIGKLKNMRSLLNGDTSSLKYLP 428 (561)
Q Consensus 352 ~~~~lp~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp 428 (561)
.+..+|. ++.+++|++|+|++ |.++.+| ..|++|++|+.|+|++|. +..+| ..|+++++|+.|+|++|. +..+|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeC
Confidence 5666776 77777777777775 6676665 456677777777777776 44443 356677777777777766 45555
Q ss_pred ccccCCcCCcccCceeecCcc
Q 043450 429 IGISRLTSLRTLEKFVVGGGV 449 (561)
Q Consensus 429 ~~i~~l~~L~~L~~~~~~~~~ 449 (561)
..+.....|+.|+ +.+|.+
T Consensus 97 ~~~~~~~~L~~l~--l~~N~~ 115 (347)
T 2ifg_A 97 WKTVQGLSLQELV--LSGNPL 115 (347)
T ss_dssp STTTCSCCCCEEE--CCSSCC
T ss_pred HHHcccCCceEEE--eeCCCc
Confidence 5433322366665 444444
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=1.1e-08 Score=100.83 Aligned_cols=170 Identities=14% Similarity=0.073 Sum_probs=96.9
Q ss_pred cCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCCC-----------------
Q 043450 363 LIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTSS----------------- 423 (561)
Q Consensus 363 l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~----------------- 423 (561)
+.+|+.|++.. .++.+++ .|.+|++|+.|++.+|. +..++. .+..+.++..+.......
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77888888877 7776664 47778888888888776 444433 455555555554433110
Q ss_pred Cc---------cCcccc----------------------------cCCcCCcccCceeecCccCCCCccCchhhhccCCC
Q 043450 424 LK---------YLPIGI----------------------------SRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLL 466 (561)
Q Consensus 424 ~~---------~lp~~i----------------------------~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L 466 (561)
+. .+|..+ ..+++|+.++ +..+.........|. .+..|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~--L~~n~i~~I~~~aF~---~~~~L 252 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLD--ISKTNATTIPDFTFA---QKKYL 252 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEE--CTTBCCCEECTTTTT---TCTTC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEE--CCCCCcceecHhhhh---CCCCC
Confidence 00 000000 0145666665 333333222233333 33344
Q ss_pred CceEEcCCCCCCCcchhhhcccccccccc-cEEEEeecCCCCCcccccCCCcchHHH-hhcCCCCCCCceEEEeecCCCC
Q 043450 467 RECRVEGLSNVSHVDEAERLQLYNKKNLL-RLGLQFGRVADGEGEEGRRKNENDEQL-LEALQPPVNVEELWIVYYGGNI 544 (561)
Q Consensus 467 ~~l~i~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~n~~~~~~-~~~l~~~~~L~~L~l~~~~~~~ 544 (561)
+.+.+.. + ........|.++.+|+ .+++.. . ...+ ...|..+++|+.|++.++.+..
T Consensus 253 ~~l~l~~--n---i~~I~~~aF~~~~~L~~~l~l~~-~---------------l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 253 LKIKLPH--N---LKTIGQRVFSNCGRLAGTLELPA-S---------------VTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CEEECCT--T---CCEECTTTTTTCTTCCEEEEECT-T---------------CCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CEEECCc--c---cceehHHHhhCChhccEEEEEcc-c---------------ceEEchhhhhCCccCCEEEeCCCccCc
Confidence 4444432 1 2233445577788888 888864 2 1122 3567889999999999988887
Q ss_pred CCh-hhhcccCCcEEEc
Q 043450 545 FPK-WLTLLTNLRDLNL 560 (561)
Q Consensus 545 lp~-~~~~l~~L~~L~L 560 (561)
++. .+.++++|+.|..
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 776 4588999998864
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=3.8e-08 Score=96.99 Aligned_cols=153 Identities=10% Similarity=0.042 Sum_probs=91.0
Q ss_pred CCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCCCCccCcccccCCcCCcccCceeecC--ccCCCCccCch----
Q 043450 386 LYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTSSLKYLPIGISRLTSLRTLEKFVVGG--GVDGNNTCRLE---- 458 (561)
Q Consensus 386 L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~--~~~~~~~~~~~---- 458 (561)
+++|+.|++.+ . +..+++ .|.++++|+.+++.+|.....-+..|..+.++..+..-.... .........+.
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 99999999998 4 788865 688999999999999884333334455555555543111000 00000000010
Q ss_pred ------------------------------------------hhh-ccCCCCceEEcCCCCCCCcchhhhcccccccccc
Q 043450 459 ------------------------------------------SLK-NLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLL 495 (561)
Q Consensus 459 ------------------------------------------~l~-~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~ 495 (561)
.+. .+..|+.+.+... .........|.++.+|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n----~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT----NATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB----CCCEECTTTTTTCTTCC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC----CcceecHhhhhCCCCCC
Confidence 000 1455665655431 12333445677888888
Q ss_pred cEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCc-eEEEeecCCCCCC-hhhhcccCCcEEEc
Q 043450 496 RLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVE-ELWIVYYGGNIFP-KWLTLLTNLRDLNL 560 (561)
Q Consensus 496 ~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~-~L~l~~~~~~~lp-~~~~~l~~L~~L~L 560 (561)
.|++..| +. .--...|..+++|+ .+++.+ .+..++ ..+.+|++|+.|+|
T Consensus 254 ~l~l~~n-i~--------------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 254 KIKLPHN-LK--------------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp EEECCTT-CC--------------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred EEECCcc-cc--------------eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 8888754 11 11134577888898 999988 555554 55688899998887
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=1.6e-07 Score=93.17 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=75.4
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcC
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLR 401 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~ 401 (561)
+|. +..+.+|++|+|+++ |.++.+| ..|+.|++|++|+|++|.|+.+|+ .|.+|++|+.|+|++|. +.
T Consensus 24 ip~-l~~~~~L~~L~l~~~--------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~ 93 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQ--------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LE 93 (347)
T ss_dssp TTT-SCSCSCCSEEECCSC--------SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CS
T ss_pred cCC-CCCCCCeeEEEccCC--------CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cc
Confidence 444 788899999999942 6788887 568999999999999999997764 68999999999999998 78
Q ss_pred ccCcccccCCCCCeEEcCCCCC
Q 043450 402 ELPTGIGKLKNMRSLLNGDTSS 423 (561)
Q Consensus 402 ~lp~~~~~l~~L~~L~l~~~~~ 423 (561)
.+|..+....+|+.|++.+|..
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSCC
T ss_pred eeCHHHcccCCceEEEeeCCCc
Confidence 8887655444599999999873
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=3.3e-08 Score=98.19 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=25.1
Q ss_pred cccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCC
Q 043450 490 NKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGN 543 (561)
Q Consensus 490 ~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 543 (561)
.+++|+.|+|+.|.+.+. -...++..+.++++|+.|++++|.++
T Consensus 277 ~~~~L~~LdLs~n~L~d~----------G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDE----------GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHH----------HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChH----------HHHHHHhhcccCCcceEEECCCCcCC
Confidence 456777777776653211 12234444455677777777777643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=1.3e-08 Score=101.91 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=94.9
Q ss_pred cccccEEeccCCCCCCCCCccccccc-----Ccccc-ccCccCEEecCCCCCcc--ccccccCCCCccEEecCCCCCcCc
Q 043450 331 LACLRALVISQPSPIFRPDLNLIREI-----PENVE-KLIHLKYLNLSGLRIES--LPETLCELYNLQKLDIRRCQDLRE 402 (561)
Q Consensus 331 l~~L~~L~l~~~~~~~~~~~~~~~~l-----p~~~~-~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~ 402 (561)
+..|+.|++++ +.+... ...+. ..++|++|+|++|.+.. +..-...+++|+.|+|++|. ++.
T Consensus 71 ~~~L~~L~Ls~---------n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAG---------VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGP 140 (372)
T ss_dssp HTTCCEEECTT---------SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCH
T ss_pred HhhCCEEEecC---------CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCH
Confidence 57799999999 445432 22222 22689999999999863 22333456789999999998 543
Q ss_pred c-Cccc-----ccCCCCCeEEcCCCCCCc----cCcccccCCcCCcccCceeecCccCCCCcc-CchhhhccCCCCceEE
Q 043450 403 L-PTGI-----GKLKNMRSLLNGDTSSLK----YLPIGISRLTSLRTLEKFVVGGGVDGNNTC-RLESLKNLQLLRECRV 471 (561)
Q Consensus 403 l-p~~~-----~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~-~~~~l~~L~~L~~l~i 471 (561)
. ...+ ...++|+.|++++|.... .++..+..+++|++|+ +.+|.+...... ....+...+.|+.|++
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~--Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS--LLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEE--CTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEe--CCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 2 2222 245789999999998322 2445556778888887 555554211100 0223344555666666
Q ss_pred cCCCCCCCcchhhhcccccccccccEEEEeecC
Q 043450 472 EGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRV 504 (561)
Q Consensus 472 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 504 (561)
+++.-.......+...+...++|+.|+|++|.+
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 553211111112333344556677777766654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=1.3e-08 Score=101.76 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=71.4
Q ss_pred ccccEEeccCCCCCCCCCccccccc--CccccccCccCEEecCCCCCccc-ccc----c-cCCCCccEEecCCCCCcCc-
Q 043450 332 ACLRALVISQPSPIFRPDLNLIREI--PENVEKLIHLKYLNLSGLRIESL-PET----L-CELYNLQKLDIRRCQDLRE- 402 (561)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~l--p~~~~~l~~L~~L~l~~~~l~~l-p~~----i-~~L~~L~~L~l~~~~~~~~- 402 (561)
.+|++|+|++ |.++.. ..-...+++|++|+|++|.++.. ... + ...++|++|+|++|. ++.
T Consensus 101 ~~L~~L~Ls~---------n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~ 170 (372)
T 3un9_A 101 HALDEVNLAS---------CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAA 170 (372)
T ss_dssp SCEEEEECTT---------CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHH
T ss_pred CCceEEEecC---------CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChH
Confidence 5777777777 334321 11123355677777777776522 122 2 235677777777776 432
Q ss_pred ----cCcccccCCCCCeEEcCCCCCCc----cCcccccCCcCCcccCceeecCccCCCCccC-chhhhccCCCCceEEcC
Q 043450 403 ----LPTGIGKLKNMRSLLNGDTSSLK----YLPIGISRLTSLRTLEKFVVGGGVDGNNTCR-LESLKNLQLLRECRVEG 473 (561)
Q Consensus 403 ----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~-~~~l~~L~~L~~l~i~~ 473 (561)
++..+...++|++|++++|.... .++..+...++|++|+ +.+|.+....... ...+...+.|+.|++++
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~--Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN--VAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE--CCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE--CCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 44445667777777777776321 2344455666777776 5555442111111 12244456667676665
Q ss_pred C
Q 043450 474 L 474 (561)
Q Consensus 474 ~ 474 (561)
.
T Consensus 249 N 249 (372)
T 3un9_A 249 N 249 (372)
T ss_dssp S
T ss_pred C
Confidence 3
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=9.5e-07 Score=89.17 Aligned_cols=194 Identities=9% Similarity=0.106 Sum_probs=117.6
Q ss_pred HHHhccccccEEeccCCCCCCCCCcccccccCccccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCccC
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIREIPENVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLRELP 404 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp 404 (561)
..|.++.+|+.+++.. +.++.+|.......+|+.+.+..+ ++.++ ..|.++++|+.+++..+ +..++
T Consensus 174 ~aF~~c~~L~~l~l~~---------n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~ 241 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSK---------TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIG 241 (401)
T ss_dssp STTTTCTTCCEEECTT---------SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEEC
T ss_pred HHhhCcccCCeeecCC---------CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcc
Confidence 3467778888888877 667777655444577888888744 66665 34677788888888763 56665
Q ss_pred c-ccccCCCCCeEEcCCCCCCccCc-ccccCCcCCcccCceeecCccC-----CCCccCchhhhccCCCCceEEcCCCCC
Q 043450 405 T-GIGKLKNMRSLLNGDTSSLKYLP-IGISRLTSLRTLEKFVVGGGVD-----GNNTCRLESLKNLQLLRECRVEGLSNV 477 (561)
Q Consensus 405 ~-~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~-----~~~~~~~~~l~~L~~L~~l~i~~~~~~ 477 (561)
. .+.+ .+|+.+.+..+ +..++ ..|.++++|+.+. +.++... ......+..+.+ |+.+.+..
T Consensus 242 ~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~--l~~~~~~~~~~~~I~~~aF~~c~~---L~~l~l~~---- 309 (401)
T 4fdw_A 242 QEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVT--TYGSTFNDDPEAMIHPYCLEGCPK---LARFEIPE---- 309 (401)
T ss_dssp TTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEE--EESSCCCCCTTCEECTTTTTTCTT---CCEECCCT----
T ss_pred cccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEE--eCCccccCCcccEECHHHhhCCcc---CCeEEeCC----
Confidence 4 3444 67888877432 44553 4577888888886 4443321 112233444444 44433321
Q ss_pred CCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCChh-hhccc-CC
Q 043450 478 SHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFPKW-LTLLT-NL 555 (561)
Q Consensus 478 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~-~L 555 (561)
.........|.++.+|+.+++..+ +. .--...|..+ +|+.+.+.++....++.. +..++ ++
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~--------------~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN-VT--------------QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT-CC--------------EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc-cc--------------EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 122333456788889999988533 11 1113457777 899999999886665533 34553 56
Q ss_pred cEEEc
Q 043450 556 RDLNL 560 (561)
Q Consensus 556 ~~L~L 560 (561)
+.|.+
T Consensus 373 ~~l~v 377 (401)
T 4fdw_A 373 TVIRV 377 (401)
T ss_dssp CEEEE
T ss_pred cEEEe
Confidence 66654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=4.5e-07 Score=89.98 Aligned_cols=193 Identities=19% Similarity=0.140 Sum_probs=104.8
Q ss_pred ccccccEEeccCCCCCCCCCc-ccccccCccccccCccCEEecCCCCCc----------cccccccCCCCccEEecCCCC
Q 043450 330 KLACLRALVISQPSPIFRPDL-NLIREIPENVEKLIHLKYLNLSGLRIE----------SLPETLCELYNLQKLDIRRCQ 398 (561)
Q Consensus 330 ~l~~L~~L~l~~~~~~~~~~~-~~~~~lp~~~~~l~~L~~L~l~~~~l~----------~lp~~i~~L~~L~~L~l~~~~ 398 (561)
....++.|.+..+. +..... ..+..+..++..+++|+.|.+...... .++..+..+++|+.|++++|.
T Consensus 105 ~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 105 KLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp TGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred CchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 34567788887642 100000 012234555677889999988654321 244445667788888887764
Q ss_pred CcCccCcccccCCCCCeEEcCCCCCCccCcccc--cCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCC
Q 043450 399 DLRELPTGIGKLKNMRSLLNGDTSSLKYLPIGI--SRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSN 476 (561)
Q Consensus 399 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~i--~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~ 476 (561)
.+ .+|. + .+++|++|++..|.........+ ..+++|+.|++....+...+ ...+..+..+
T Consensus 184 ~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~--~~~~~~l~~~------------- 245 (362)
T 2ra8_A 184 NL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF--DGDMNVFRPL------------- 245 (362)
T ss_dssp TC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC--CSCGGGTGGG-------------
T ss_pred Cc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc--chhHHHHHHH-------------
Confidence 22 3443 3 36777777776665222111222 25667777663322221100 0001111100
Q ss_pred CCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCC-----CChhhhc
Q 043450 477 VSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNI-----FPKWLTL 551 (561)
Q Consensus 477 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~ 551 (561)
.....+++|+.|.|++|.+.+. ..........+++|+.|+|+.|.+.. ++..+..
T Consensus 246 ---------l~~~~~p~Lr~L~L~~~~i~~~-----------~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 246 ---------FSKDRFPNLKWLGIVDAEEQNV-----------VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305 (362)
T ss_dssp ---------SCTTTCTTCCEEEEESCTTHHH-----------HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHH
T ss_pred ---------HhcCCCCCcCEEeCCCCCCchH-----------HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhccc
Confidence 0113468999999987763210 11112222457899999999988653 4555578
Q ss_pred ccCCcEEEcC
Q 043450 552 LTNLRDLNLD 561 (561)
Q Consensus 552 l~~L~~L~L~ 561 (561)
+++|+.|+|+
T Consensus 306 l~~L~~L~L~ 315 (362)
T 2ra8_A 306 IKHLKFINMK 315 (362)
T ss_dssp HTTCSEEECC
T ss_pred CCcceEEECC
Confidence 8999999985
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=5.3e-06 Score=83.71 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=119.1
Q ss_pred cccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCc-ccccC
Q 043450 333 CLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPT-GIGKL 410 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l 410 (561)
+|+.+.+.. .++.++ ..|..+.+|+.+++..|.++.+|.......+|+.+.+..+ +..++. .+.++
T Consensus 158 ~L~~i~lp~----------~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~ 225 (401)
T 4fdw_A 158 TVQEIVFPS----------TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKT 225 (401)
T ss_dssp CCCEEECCT----------TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC
T ss_pred CceEEEeCC----------CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCC
Confidence 577777764 345553 4567788899999988888888876555788888888753 666654 67788
Q ss_pred CCCCeEEcCCCCCCccCccc-ccCCcCCcccCceeecCccCCCCccCchhhhccCCCCceEEcCCCCC-CCcchhhhccc
Q 043450 411 KNMRSLLNGDTSSLKYLPIG-ISRLTSLRTLEKFVVGGGVDGNNTCRLESLKNLQLLRECRVEGLSNV-SHVDEAERLQL 488 (561)
Q Consensus 411 ~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~i~~~~~~-~~~~~~~~~~l 488 (561)
++|+.+.+..+ +..++.. |.+ ++|+.+. + .+.........+ ..++.|+.+.+.+.... ..........|
T Consensus 226 ~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~--l-p~~i~~I~~~aF---~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 226 SQLKTIEIPEN--VSTIGQEAFRE-SGITTVK--L-PNGVTNIASRAF---YYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTCCCEECCTT--CCEECTTTTTT-CCCSEEE--E-ETTCCEECTTTT---TTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred CCCCEEecCCC--ccCcccccccc-CCccEEE--e-CCCccEEChhHh---hCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 88998888764 4555544 444 6777775 3 222222222233 34455555555432110 11112344567
Q ss_pred ccccccccEEEEeecCCCCCcccccCCCcchHHHhhcCCCCCCCceEEEeecCCCCCC-hhhhcccCCcEEEcC
Q 043450 489 YNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQLLEALQPPVNVEELWIVYYGGNIFP-KWLTLLTNLRDLNLD 561 (561)
Q Consensus 489 ~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~ 561 (561)
.++.+|+.+++.. .+.. --...|..+++|+.+.+..+ +..++ ..+.++ +|+.|+++
T Consensus 297 ~~c~~L~~l~l~~-~i~~--------------I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRI--------------LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp TTCTTCCEECCCT-TCCE--------------ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred hCCccCCeEEeCC-ceEE--------------EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 8888888888872 2111 11335677889999999655 44444 345677 88888764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=4.8e-06 Score=78.32 Aligned_cols=79 Identities=24% Similarity=0.250 Sum_probs=51.1
Q ss_pred cccCccCEEecCCCCCccc---cccccCCCCccEEecCCCCCcCccCcccccCC--CCCeEEcCCCCCCccCcc------
Q 043450 361 EKLIHLKYLNLSGLRIESL---PETLCELYNLQKLDIRRCQDLRELPTGIGKLK--NMRSLLNGDTSSLKYLPI------ 429 (561)
Q Consensus 361 ~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~------ 429 (561)
..+++|++|+|++|.|+.+ |..+..+++|+.|+|++|. +..+. .+..+. +|+.|++++|...+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3466777777777776643 3455677777777777776 55542 244444 777778877775554542
Q ss_pred -cccCCcCCcccC
Q 043450 430 -GISRLTSLRTLE 441 (561)
Q Consensus 430 -~i~~l~~L~~L~ 441 (561)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 256677777776
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=3.1e-05 Score=72.75 Aligned_cols=82 Identities=22% Similarity=0.193 Sum_probs=64.7
Q ss_pred HHHhccccccEEeccCCCCCCCCCccccccc---CccccccCccCEEecCCCCCccccccccCCC--CccEEecCCCCCc
Q 043450 326 ELFSKLACLRALVISQPSPIFRPDLNLIREI---PENVEKLIHLKYLNLSGLRIESLPETLCELY--NLQKLDIRRCQDL 400 (561)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~ 400 (561)
-....+++|+.|+|++ |.+..+ |..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|...
T Consensus 164 i~~~~l~~L~~L~Ls~---------N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 164 IIEENIPELLSLNLSN---------NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHCTTCCEEECTT---------SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHhhCCCCCEEECCC---------CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 3346789999999999 666654 46677899999999999999876 3355555 9999999999955
Q ss_pred CccCc-------ccccCCCCCeEE
Q 043450 401 RELPT-------GIGKLKNMRSLL 417 (561)
Q Consensus 401 ~~lp~-------~~~~l~~L~~L~ 417 (561)
..+|. .+..+++|+.||
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 55652 367899999996
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=2.3e-05 Score=69.82 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCccccc-----ccCccccccCccCEEecCCCCCc-----cccccccCCCCcc
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIR-----EIPENVEKLIHLKYLNLSGLRIE-----SLPETLCELYNLQ 390 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~ 390 (561)
...+...+.....|+.|+|++|. .++ .+...+...++|++|+|++|.+. .+...+...++|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~--------~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIM--------NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCT--------TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHhcCCCCCEEEecCCC--------CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC
Confidence 44566677888999999999830 443 34455666788999999999876 2455566778899
Q ss_pred EEecCCCCCcCc-----cCcccccCCCCCeEEc--CCCCCCcc----CcccccCCcCCcccC
Q 043450 391 KLDIRRCQDLRE-----LPTGIGKLKNMRSLLN--GDTSSLKY----LPIGISRLTSLRTLE 441 (561)
Q Consensus 391 ~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----lp~~i~~l~~L~~L~ 441 (561)
+|+|++|. ++. +...+...++|++|++ ++|..... +...+...++|+.|+
T Consensus 97 ~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 97 SLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp EEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred EEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEe
Confidence 99999987 543 4556677788999998 66763221 223344456666666
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=5.9e-05 Score=67.10 Aligned_cols=89 Identities=19% Similarity=0.130 Sum_probs=68.8
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccc-----cCccccccCccCEEecCCCCCcc-----ccccccCCCCccEEe
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIRE-----IPENVEKLIHLKYLNLSGLRIES-----LPETLCELYNLQKLD 393 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~ 393 (561)
+...+....+|++|+|++ |.++. +...+...++|++|+|++|.|.. +...+...+.|++|+
T Consensus 57 l~~~L~~~~~L~~L~Ls~---------n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~ 127 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVG---------TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR 127 (185)
T ss_dssp HHHHHTTCCSCCEEECTT---------SCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEE
T ss_pred HHHHHHhCCCcCEEECcC---------CCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEE
Confidence 444566788999999999 55543 44555666899999999999873 567788889999999
Q ss_pred c--CCCCCcCc-----cCcccccCCCCCeEEcCCCC
Q 043450 394 I--RRCQDLRE-----LPTGIGKLKNMRSLLNGDTS 422 (561)
Q Consensus 394 l--~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~ 422 (561)
| ++|. ++. +...+...++|++|++++|.
T Consensus 128 L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 128 IDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred ecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 9 7787 443 34456667899999999987
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=4.2e-05 Score=66.62 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=55.2
Q ss_pred cccEEeccCCCCCCCCCccccccc-CccccccCccCEEecCCCC-Cc-cccccccCC----CCccEEecCCCCCcCcc-C
Q 043450 333 CLRALVISQPSPIFRPDLNLIREI-PENVEKLIHLKYLNLSGLR-IE-SLPETLCEL----YNLQKLDIRRCQDLREL-P 404 (561)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-l~-~lp~~i~~L----~~L~~L~l~~~~~~~~l-p 404 (561)
.|+.||+++|. ++.. -..+..+++|++|+|++|. |+ .--..++.+ ++|++|++++|..++.- -
T Consensus 62 ~L~~LDLs~~~---------Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC---------IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC---------CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC---------ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 58888888853 3221 1335667888888888886 66 223445554 36888888888766532 1
Q ss_pred cccccCCCCCeEEcCCCCCCcc
Q 043450 405 TGIGKLKNMRSLLNGDTSSLKY 426 (561)
Q Consensus 405 ~~~~~l~~L~~L~l~~~~~~~~ 426 (561)
..+..+++|++|++++|..++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 2456778888888888875543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.35 E-value=6.9e-05 Score=65.28 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=37.4
Q ss_pred CccCEEecCCCCCc-cccccccCCCCccEEecCCCCCcCcc-CcccccC----CCCCeEEcCCCCC
Q 043450 364 IHLKYLNLSGLRIE-SLPETLCELYNLQKLDIRRCQDLREL-PTGIGKL----KNMRSLLNGDTSS 423 (561)
Q Consensus 364 ~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~L~l~~~~~ 423 (561)
.+|+.||+++|.|+ .--..+.++++|++|+|++|..++.- -..+..+ ++|++|++++|..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 46888888888766 22345677788888888887655432 1123333 2567777766653
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.50 E-value=0.0022 Score=64.38 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=68.2
Q ss_pred ccCCCCccEEecCCCCCcCccCcccccCCCCCeEEcCCCCCCccCc-ccccCCcCCcccCceeecCccCCCCccCchhhh
Q 043450 383 LCELYNLQKLDIRRCQDLRELPTGIGKLKNMRSLLNGDTSSLKYLP-IGISRLTSLRTLEKFVVGGGVDGNNTCRLESLK 461 (561)
Q Consensus 383 i~~L~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~l~ 461 (561)
+..+..|+.+.+..+. ...-...+..+..++.+...... +| ..+..+.+|+.+. +.. +........+....
T Consensus 249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~--l~~-~i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVK--LLD-SVKFIGEEAFESCT 320 (394)
T ss_dssp TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEE--ECT-TCCEECTTTTTTCT
T ss_pred ccccccceeEEcCCCc-ceeeccccccccccceeccCcee----eccccccccccccccc--ccc-ccceechhhhcCCC
Confidence 4455566666655432 21122244555556555544322 22 2345556666654 221 11111122333333
Q ss_pred ccCCCCceEEcCCCCCCCcchhhhcccccccccccEEEEeecCCCCCcccccCCCcchHHH-hhcCCCCCCCceEEEeec
Q 043450 462 NLQLLRECRVEGLSNVSHVDEAERLQLYNKKNLLRLGLQFGRVADGEGEEGRRKNENDEQL-LEALQPPVNVEELWIVYY 540 (561)
Q Consensus 462 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~~-~~~l~~~~~L~~L~l~~~ 540 (561)
+ |+.+.+. ..........|.++.+|+.+++..+ + ..+ ...|..+++|+++++..+
T Consensus 321 ~---L~~i~lp-----~~v~~I~~~aF~~c~~L~~i~lp~~-l---------------~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 321 S---LVSIDLP-----YLVEEIGKRSFRGCTSLSNINFPLS-L---------------RKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T---CCEECCC-----TTCCEECTTTTTTCTTCCEECCCTT-C---------------CEECTTTBTTCTTCCEEEEEGG
T ss_pred C---CCEEEeC-----CcccEEhHHhccCCCCCCEEEECcc-c---------------cEehHHHhhCCCCCCEEEECCC
Confidence 3 3333331 1122233345777788888777532 1 111 235677788888888655
Q ss_pred CCCCCChhhhcccCCcEE
Q 043450 541 GGNIFPKWLTLLTNLRDL 558 (561)
Q Consensus 541 ~~~~lp~~~~~l~~L~~L 558 (561)
- ..+...+.++++|+.+
T Consensus 377 ~-~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 L-EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp G-GGGGGGBCTTCEEEEE
T ss_pred C-EEhhheecCCCCCcEE
Confidence 3 2334445667777654
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.16 E-value=0.0041 Score=62.36 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=31.2
Q ss_pred ccCccCEEecCCCCCccccccccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcc
Q 043450 362 KLIHLKYLNLSGLRIESLPETLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRT 439 (561)
Q Consensus 362 ~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~ 439 (561)
....|+.+.+..+...--...+..+..++.+...... +|. .+..+.+|+.+.+..+ +..++. .|.++++|+.
T Consensus 251 ~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCcceeeccccccccccceeccCcee----eccccccccccccccccccc--cceechhhhcCCCCCCE
Confidence 3444555555443322222334445555555444321 111 3444555555555432 233322 2445555555
Q ss_pred cC
Q 043450 440 LE 441 (561)
Q Consensus 440 L~ 441 (561)
++
T Consensus 325 i~ 326 (394)
T 4fs7_A 325 ID 326 (394)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.92 E-value=0.04 Score=55.06 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=17.8
Q ss_pred eEEEEeeecCCCCCc-ccccccCceeEEEEccC
Q 043450 244 VRHIGLNFQRGASFP-MSFFEFDRLRSLLIYDT 275 (561)
Q Consensus 244 ~~~l~l~~~~~~~~~-~~~~~~~~Lr~L~~~~~ 275 (561)
++.+.+.. .++.+. .+|.++.+|+.+.+..+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGG
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCC
Confidence 44444432 233333 56778888888877654
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.66 E-value=0.068 Score=52.24 Aligned_cols=169 Identities=10% Similarity=0.047 Sum_probs=93.9
Q ss_pred CCcEEEEEcCchHHHhhc----------C--CcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCC
Q 043450 4 PGSKIVVTTRNVSVARMM----------R--STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGL 71 (561)
Q Consensus 4 ~GsrIivTTR~~~v~~~~----------~--~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~Gl 71 (561)
++.++|+|+|.......+ . ....+++.||+.+|+.+++...+-... ...+. ..+|++.|+|.
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~----~~~i~~~t~G~ 242 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD--IDFKD----YEVVYEKIGGI 242 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT--CCCCC----HHHHHHHHCSC
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC--CCCCc----HHHHHHHhCCC
Confidence 467899999987643221 1 125899999999999999987531101 11123 27899999999
Q ss_pred hhhHHHHhhhccccccccccCCcchhHHHH-HHHhhhhhhhhhhcccccchhh-hcc--cCCCCChhhhhhhhhhcccCC
Q 043450 72 PLAAKVTGNLLCDKRTGNLLSSKSIVNEWQ-RILDSEVWKVEEIKQGLLAPLL-LSY--NDLPSNSMVKRCFSYCAVFPK 147 (561)
Q Consensus 72 PLal~~~g~~L~~~~~~~~l~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~l~-~Sy--~~L~~~~~~k~cfl~~a~fp~ 147 (561)
|+++..++..+.... ....|- ...+... ..+...+. ..+ ..+++ ..+..+..+|+
T Consensus 243 P~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~--~~~~~l~~la~--- 301 (357)
T 2fna_A 243 PGWLTYFGFIYLDNK---------NLDFAINQTLEYAK-------KLILKEFENFLHGREIARK--RYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHHHHHHHHHHC---------CHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHH--HHHHHHHHHTT---
T ss_pred HHHHHHHHHHHcccc---------chHHHHHHHHHHHH-------HHHHHHHHHHhhccccccH--HHHHHHHHHHc---
Confidence 999999987643211 011121 1111100 00001111 111 14666 67888888887
Q ss_pred CcccCHHHHHHHHH-HcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEe-cHHHHHH
Q 043450 148 DYNMNKRELINLWM-AQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKM-HDIVHDF 215 (561)
Q Consensus 148 ~~~i~~~~Li~~w~-a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~m-hdlv~~~ 215 (561)
+. +...+..... ..|. ... ......+++.|.+.+++.... + .|++ |+++++.
T Consensus 302 g~--~~~~l~~~~~~~~g~--~~~----~~~~~~~L~~L~~~gli~~~~-~-------~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGI--EIS----DSEIYNYLTQLTKHSWIIKEG-E-------KYCPSEPLISLA 355 (357)
T ss_dssp CB--CHHHHHHHHHHHHCS--CCC----HHHHHHHHHHHHHTTSEEESS-S-------CEEESSHHHHHH
T ss_pred CC--CHHHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhCCCEEecC-C-------EEEecCHHHHHh
Confidence 22 3344432221 1121 000 123466899999999997642 1 1665 6777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.51 E-value=0.02 Score=47.10 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=16.8
Q ss_pred ccCEEecCCCCCcccccc-ccCCCCccEEecCCCC
Q 043450 365 HLKYLNLSGLRIESLPET-LCELYNLQKLDIRRCQ 398 (561)
Q Consensus 365 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 398 (561)
+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555555555555432 3444555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.40 E-value=0.021 Score=46.97 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=44.8
Q ss_pred CEEecCCCCCc--cccccccCCCCccEEecCCCCCcCccCc-ccccCCCCCeEEcCCCC
Q 043450 367 KYLNLSGLRIE--SLPETLCELYNLQKLDIRRCQDLRELPT-GIGKLKNMRSLLNGDTS 422 (561)
Q Consensus 367 ~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 422 (561)
..++.+++.++ .+|..+. .+|++|+|++|. ++.+|. .+..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888898888 8987654 579999999998 888876 46789999999999986
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.93 E-value=0.1 Score=52.16 Aligned_cols=169 Identities=9% Similarity=-0.009 Sum_probs=90.0
Q ss_pred CcEEEEEcCchHHHhhcC---------CcceEeCCCCChhhhHHHHHHH---hcCCCCCCCCCCHHHHHHHHHHHcC---
Q 043450 5 GSKIVVTTRNVSVARMMR---------STNIISIKPLPEDEFWSLFERF---AFFGHSSVDREKLEPIARQIARKCK--- 69 (561)
Q Consensus 5 GsrIivTTR~~~v~~~~~---------~~~~~~v~~L~~~~a~~Lf~~~---a~~~~~~~~~~~~~~~~~~iv~~c~--- 69 (561)
.-.||+|||+..+...+. ....+++++++.++++++|... ++... .--.+....|++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-----VWEPRHLELISDVYGEDK 253 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-----SCCHHHHHHHHHHHCGGG
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-----CCChHHHHHHHHHHHHhc
Confidence 344888888765432221 1223999999999999999754 33211 112456788999999
Q ss_pred ---CChhhHHHHhhh-c--cccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhc
Q 043450 70 ---GLPLAAKVTGNL-L--CDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCA 143 (561)
Q Consensus 70 ---GlPLal~~~g~~-L--~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a 143 (561)
|.|..+..+... . +.... ...-+.+.+..+..... . ...+.-++..|++ ..+.++..+|
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~----~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~--~~~~~l~aia 318 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMG----RDSLSEDLVRKAVSENE-------A--ASIQTHELEALSI--HELIILRLIA 318 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTT----CSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCH--HHHHHHHHHH
Confidence 999655544432 1 10000 00111223332222110 0 2334557788988 7788888888
Q ss_pred ccC--CCcccCHHHHHHHHHHc--CCCCCCcchhHHHHHHHHHHHHHhcCCccccc
Q 043450 144 VFP--KDYNMNKRELINLWMAQ--GYLNADEDEEMEMIGEEYFNILATRSFFQEFE 195 (561)
Q Consensus 144 ~fp--~~~~i~~~~Li~~w~a~--g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 195 (561)
.+. .+..+...++...+... ....... . .......+++.|.+.+++....
T Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 319 EATLGGMEWINAGLLRQRYEDASLTMYNVKP-R-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHHHHHSCCCC-C-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHhhcCCCC-C-CHHHHHHHHHHHHhCCCEEeec
Confidence 753 22335555554444211 0111000 0 0123456799999999997654
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.66 E-value=0.046 Score=54.58 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=9.8
Q ss_pred cCCCCCCCceEEEeecC
Q 043450 525 ALQPPVNVEELWIVYYG 541 (561)
Q Consensus 525 ~l~~~~~L~~L~l~~~~ 541 (561)
.|..+.+|+.+++.++.
T Consensus 352 aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECCce
Confidence 45556666666665543
No 167
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.05 E-value=0.095 Score=51.04 Aligned_cols=171 Identities=16% Similarity=0.089 Sum_probs=93.7
Q ss_pred CCcEEEEEcCchHHHhhc------------CCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCC
Q 043450 4 PGSKIVVTTRNVSVARMM------------RSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGL 71 (561)
Q Consensus 4 ~GsrIivTTR~~~v~~~~------------~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~Gl 71 (561)
++.++|+|++...+...+ .....+++.||+.+|+.+++....-..... --.+.+.+|++.|+|.
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~----~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD----VPENEIEEAVELLDGI 238 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCC
Confidence 467899999886542221 112479999999999999997753211111 1134678999999999
Q ss_pred hhhHHHHhhhccccccccccCCcchhHHH-HHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcc
Q 043450 72 PLAAKVTGNLLCDKRTGNLLSSKSIVNEW-QRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYN 150 (561)
Q Consensus 72 PLal~~~g~~L~~~~~~~~l~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~ 150 (561)
|+++..++..+.... ....+ ....+.....+ ...+. .+.+ . ++ ..+..+..+|+ +.
T Consensus 239 P~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~l~---~l~~-~-~~--~~~~~l~~la~---g~- 295 (350)
T 2qen_A 239 PGWLVVFGVEYLRNG---------DFGRAMKRTLEVAKGLI---MGELE---ELRR-R-SP--RYVDILRAIAL---GY- 295 (350)
T ss_dssp HHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHH---HHHHH---HHHH-H-CH--HHHHHHHHHHT---TC-
T ss_pred HHHHHHHHHHHhccc---------cHhHHHHHHHHHHHHHH---HHHHH---HHHh-C-Ch--hHHHHHHHHHh---CC-
Confidence 999999987532210 00111 11111100000 00010 1111 1 44 67888888887 21
Q ss_pred cCHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccCCCCCCceeeEEe-cHHHHHH
Q 043450 151 MNKRELINLWMAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEKDDDDDDILRCKM-HDIVHDF 215 (561)
Q Consensus 151 i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~m-hdlv~~~ 215 (561)
.....+........ . ... ......+++.|.+.+++.... + .|++ |.++++.
T Consensus 296 ~~~~~l~~~~~~~~-~-~~~----~~~~~~~l~~L~~~gli~~~~-~-------~y~~~~p~~~~~ 347 (350)
T 2qen_A 296 NRWSLIRDYLAVKG-T-KIP----EPRLYALLENLKKMNWIVEED-N-------TYKIADPVVATV 347 (350)
T ss_dssp CSHHHHHHHHHHTT-C-CCC----HHHHHHHHHHHHHTTSEEEET-T-------EEEESSHHHHHH
T ss_pred CCHHHHHHHHHHHh-C-CCC----HHHHHHHHHHHHhCCCEEecC-C-------EEEEecHHHHHH
Confidence 34445544432211 0 111 223467899999999997641 1 2665 5666554
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.80 E-value=0.34 Score=47.78 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=67.8
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCccccc-cccCCCCccEEecCCCCCcCccCc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLPE-TLCELYNLQKLDIRRCQDLRELPT 405 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~ 405 (561)
+..+..|+.+.+.. + ++.+. ..+....+|+.+.+..+ ++.++. .+.++.+|+.+.+.++. ++.++.
T Consensus 236 f~~~~~L~~i~lp~---------~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~ 303 (379)
T 4h09_A 236 FYGMKALDEIAIPK---------N-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEP 303 (379)
T ss_dssp TTTCSSCCEEEECT---------T-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECT
T ss_pred ccCCccceEEEcCC---------C-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccc-cceehh
Confidence 55677788887765 2 44443 34566777888887543 555553 46778888888887765 666654
Q ss_pred -ccccCCCCCeEEcCCCCCCccCcc-cccCCcCCcccC
Q 043450 406 -GIGKLKNMRSLLNGDTSSLKYLPI-GISRLTSLRTLE 441 (561)
Q Consensus 406 -~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~ 441 (561)
.+.++.+|+.+.+..+ +..++. .|.++++|+.+.
T Consensus 304 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCC
T ss_pred hhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEE
Confidence 6778888888888643 455543 467788888776
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.48 E-value=0.29 Score=43.12 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=54.5
Q ss_pred hhHHHHHHhccccccEEeccCCCCCCCCCccccc-----ccCccccccCccCEEecCCCCCc-----cccccccCCCCcc
Q 043450 321 SSILRELFSKLACLRALVISQPSPIFRPDLNLIR-----EIPENVEKLIHLKYLNLSGLRIE-----SLPETLCELYNLQ 390 (561)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~ 390 (561)
...+......-..|+.|+|+++ +.++ .+-+.+..-++|+.|+|++|.|. .+-..+..-+.|+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~n--------n~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNM--------KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLR 101 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTC--------CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCC
T ss_pred HHHHHHHHhcCCCccEEECCCC--------CCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccC
Confidence 3445555666778888888862 1333 23344455577888888888875 2334455567788
Q ss_pred EEecCCCCCcCc-----cCcccccCCCCCeEEcCCC
Q 043450 391 KLDIRRCQDLRE-----LPTGIGKLKNMRSLLNGDT 421 (561)
Q Consensus 391 ~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~ 421 (561)
+|+|++|. ++. +-+.+..-+.|+.|++++|
T Consensus 102 ~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 102 VLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp EEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred eEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 88888776 331 1122333345777777654
No 170
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.18 E-value=0.38 Score=43.57 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCchHHH-hhc-CCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhh
Q 043450 3 LPGSKIVVTTRNVSVA-RMM-RSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGN 80 (561)
Q Consensus 3 ~~GsrIivTTR~~~v~-~~~-~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~ 80 (561)
..+.++|+||+..... ..+ .....+++++++.++..+++...+....... -.+..+.++++|+|.|..+..+..
T Consensus 154 ~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 154 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3577888888765321 111 1135899999999999999988774322111 134578899999999998887765
Q ss_pred h
Q 043450 81 L 81 (561)
Q Consensus 81 ~ 81 (561)
.
T Consensus 230 ~ 230 (250)
T 1njg_A 230 Q 230 (250)
T ss_dssp H
T ss_pred H
Confidence 4
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.97 E-value=0.86 Score=44.83 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=64.0
Q ss_pred HhccccccEEeccCCCCCCCCCcccccccC-ccccccCccCEEecCCCCCcccc-ccccCCCCccEEecCCCCCcCccCc
Q 043450 328 FSKLACLRALVISQPSPIFRPDLNLIREIP-ENVEKLIHLKYLNLSGLRIESLP-ETLCELYNLQKLDIRRCQDLRELPT 405 (561)
Q Consensus 328 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~ 405 (561)
+.....|+.+.+.. .+..++ ..+.....|+.+.+..+ ++.++ ..+.++.+|+.+.+..+ +..++.
T Consensus 213 f~~~~~l~~i~~~~----------~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~ 279 (379)
T 4h09_A 213 FSYGKNLKKITITS----------GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPY 279 (379)
T ss_dssp TTTCSSCSEEECCT----------TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECT
T ss_pred cccccccceeeecc----------ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccc
Confidence 44566677776654 233332 33556677888887665 55554 34667788888888642 556654
Q ss_pred -ccccCCCCCeEEcCCCCCCccCc-ccccCCcCCcccC
Q 043450 406 -GIGKLKNMRSLLNGDTSSLKYLP-IGISRLTSLRTLE 441 (561)
Q Consensus 406 -~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~ 441 (561)
.+..+.+|+.+.+.++. +..++ ..|.++.+|+.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp TTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccc-cceehhhhhcCCCCCCEEE
Confidence 56777888888887665 45554 3467778888775
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.58 E-value=1.4 Score=38.67 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=62.1
Q ss_pred HHHHHhccccccEEeccCCCCCCCCCcccccc-----cCccccccCccCEEecCCCCCc-----cccccccCCCCccEEe
Q 043450 324 LRELFSKLACLRALVISQPSPIFRPDLNLIRE-----IPENVEKLIHLKYLNLSGLRIE-----SLPETLCELYNLQKLD 393 (561)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~ 393 (561)
+-..+..-..|+.|+|++ +.++. +-+.+..-+.|++|+|++|.|. .+-+.+..-+.|+.|+
T Consensus 62 la~aL~~N~~L~~L~L~~---------n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~ 132 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLAN---------TAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFK 132 (197)
T ss_dssp HHHHHTTCSCCCEEECTT---------SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEE
T ss_pred HHHHHhhCCCcCEEEccC---------CCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEE
Confidence 444566778899999999 55542 3344555688999999999986 2445566667899999
Q ss_pred cCCCCC--cC-----ccCcccccCCCCCeEEcCCCC
Q 043450 394 IRRCQD--LR-----ELPTGIGKLKNMRSLLNGDTS 422 (561)
Q Consensus 394 l~~~~~--~~-----~lp~~~~~l~~L~~L~l~~~~ 422 (561)
|++|.. +. .+-+.+..-+.|+.|+++.+.
T Consensus 133 L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 133 ADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 997642 22 122334455778888887655
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.41 E-value=8.5 Score=37.48 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=98.7
Q ss_pred CCcEEEEEcCchHHHhhcCC-------cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHc--------
Q 043450 4 PGSKIVVTTRNVSVARMMRS-------TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKC-------- 68 (561)
Q Consensus 4 ~GsrIivTTR~~~v~~~~~~-------~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c-------- 68 (561)
.+..||+||++..+...+.. ...++++|++.++..+++...+-..... ..--.+....+++++
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCT
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCC
Confidence 46678888887654433321 2379999999999999998765210000 011234577888999
Q ss_pred -CCChhhH-HHHhhhcc--ccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcc
Q 043450 69 -KGLPLAA-KVTGNLLC--DKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAV 144 (561)
Q Consensus 69 -~GlPLal-~~~g~~L~--~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~ 144 (561)
+|.|-.+ .++-.+.. .... ...-+.+....+.... ....+.-.+..|+. ..+.++..++.
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~~~----~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~--~~~~~L~~l~~ 299 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQNG----RKHIAPEDVRKSSKEV----------LFGISEEVLIGLPL--HEKLFLLAIVR 299 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTT----CSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCH--HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhC----CCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCH--HHHHHHHHHHH
Confidence 7876443 33332211 0000 0011122222222211 11223334566776 56666666665
Q ss_pred cC---CCcccCHHHHHHHHHH----cCCCCCCcchhHHHHHHHHHHHHHhcCCcccccC----CCCCCcee---eEEecH
Q 043450 145 FP---KDYNMNKRELINLWMA----QGYLNADEDEEMEMIGEEYFNILATRSFFQEFEK----DDDDDDIL---RCKMHD 210 (561)
Q Consensus 145 fp---~~~~i~~~~Li~~w~a----~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~----~~~~~~~~---~~~mhd 210 (561)
+. .+..+....+...+.. .|. .... ......+++.|.+.+++..... +..+.... .+..++
T Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~----~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~ 374 (389)
T 1fnn_A 300 SLKISHTPYITFGDAEESYKIVCEEYGE-RPRV----HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLD 374 (389)
T ss_dssp HHHHHCSSCEEHHHHHHHHHHHHHHTTC-CCCC----HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHH
T ss_pred HHhhccCCCccHHHHHHHHHHHHHHcCC-CCCC----HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHH
Confidence 43 2213455555544433 221 1111 1234567899999999987554 11122111 123457
Q ss_pred HHHHHHHHhhcc
Q 043450 211 IVHDFAQFVSRK 222 (561)
Q Consensus 211 lv~~~~~~i~~~ 222 (561)
+...+...+..+
T Consensus 375 v~~~~~~~~~~~ 386 (389)
T 1fnn_A 375 TLEAVITKLIKE 386 (389)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666665543
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.20 E-value=1.1 Score=42.87 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=47.6
Q ss_pred CcEEEEEcCchH-HHhhc--CCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhhh
Q 043450 5 GSKIVVTTRNVS-VARMM--RSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGNL 81 (561)
Q Consensus 5 GsrIivTTR~~~-v~~~~--~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~~ 81 (561)
+.++|.||.... +...+ ....++++++++.+|..+++...+...... --.+....++++|+|.|-.+..+...
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR----ITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 346676665432 11111 113589999999999999998877432211 12355788999999999877666544
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.93 E-value=8.2 Score=37.50 Aligned_cols=165 Identities=12% Similarity=0.020 Sum_probs=87.9
Q ss_pred CCcEEEEEcCchH--------HHhhcCCcceEeCCCCChhhhHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHHcC---
Q 043450 4 PGSKIVVTTRNVS--------VARMMRSTNIISIKPLPEDEFWSLFERFA---FFGHSSVDREKLEPIARQIARKCK--- 69 (561)
Q Consensus 4 ~GsrIivTTR~~~--------v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a---~~~~~~~~~~~~~~~~~~iv~~c~--- 69 (561)
.+..+|+||+... +...+. ...+++++++.++..+++...+ +... ..+ ++ ..+.++++++
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~-~~---~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPG-VLD-PD---VVPLCAALAAREH 239 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBC-SS---HHHHHHHHHHSSS
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCC-HH---HHHHHHHHHHHhc
Confidence 4567888887753 222221 2489999999999999998774 3221 122 22 3567777887
Q ss_pred CCh-hhHHHHhhhcc--ccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccC
Q 043450 70 GLP-LAAKVTGNLLC--DKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFP 146 (561)
Q Consensus 70 GlP-Lal~~~g~~L~--~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp 146 (561)
|.| .|+.++..+.. ... -...-+.+.++.+...... ..+.-++..+++ ..+..+..++...
T Consensus 240 G~~r~~~~~l~~a~~~a~~~----~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~--~~~~~l~a~~~~~ 303 (387)
T 2v1u_A 240 GDARRALDLLRVAGEIAERR----REERVRREHVYSARAEIER----------DRVSEVVRTLPL--HAKLVLLSIMMLE 303 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHT----TCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCH--HHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHHHHc----CCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 999 44444433321 100 0011234555555443211 124456778887 5566666566332
Q ss_pred CC-cccCHHHHHHHH----HHcCCCCCCcchhHHHHHHHHHHHHHhcCCccccc
Q 043450 147 KD-YNMNKRELINLW----MAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFE 195 (561)
Q Consensus 147 ~~-~~i~~~~Li~~w----~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 195 (561)
.+ ..+....+.+.. ...| ..+. .......+++.|...+++....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 304 DGGRPASTGEIYERYKELTSTLG-LEHV----TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp SSSCCEEHHHHHHHHHHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCCcHHHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEEe
Confidence 22 234444333332 2223 1111 1234567889999999998754
No 176
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.36 E-value=42 Score=32.31 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=86.9
Q ss_pred CCcEEEEEcCchHHH----hhc--CCcceEeCCCCChhhhHHHHHHHhc---CCCCCCCCCCHHHHHHHHHHHcC---CC
Q 043450 4 PGSKIVVTTRNVSVA----RMM--RSTNIISIKPLPEDEFWSLFERFAF---FGHSSVDREKLEPIARQIARKCK---GL 71 (561)
Q Consensus 4 ~GsrIivTTR~~~v~----~~~--~~~~~~~v~~L~~~~a~~Lf~~~a~---~~~~~~~~~~~~~~~~~iv~~c~---Gl 71 (561)
.+.+||+||+..... ..+ .....+++++++.++..++|...+- ... ..+ .+..+.++++|+ |.
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~----~~~~~~i~~~~~~~~G~ 237 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG-TYD----DEILSYIAAISAKEHGD 237 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT-SCC----SHHHHHHHHHHHTTCCC
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC-CcC----HHHHHHHHHHHHhccCC
Confidence 467899999875321 111 1123899999999999999998742 211 111 234667788887 87
Q ss_pred hh-hHHHHhhhccccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCCCcc
Q 043450 72 PL-AAKVTGNLLCDKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYN 150 (561)
Q Consensus 72 PL-al~~~g~~L~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~~~~ 150 (561)
|- |+.++-.+...-. ....-+.+.++.+...... ..+.-++..|++ ..|..+..++....+-.
T Consensus 238 ~r~a~~~l~~a~~~a~----~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~--~~~~~l~al~~~~~~~~ 301 (384)
T 2qby_B 238 ARKAVNLLFRAAQLAS----GGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPF--HYKLALRSLIESEDVMS 301 (384)
T ss_dssp HHHHHHHHHHHHHHTT----SSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCH--HHHHHHHHHHTCCBHHH
T ss_pred HHHHHHHHHHHHHHhc----CCCccCHHHHHHHHHHHhc----------chHHHHHHcCCH--HHHHHHHHHHHhcccCh
Confidence 76 4444433321100 0012235555555543211 224556778877 55666655655111001
Q ss_pred cCHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHhcCCcccccC
Q 043450 151 MNKRELINLWMAQGYLNADEDEEMEMIGEEYFNILATRSFFQEFEK 196 (561)
Q Consensus 151 i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 196 (561)
+. +.....-...| ..... ......+++.|...+++.....
T Consensus 302 ~~-~~~~~~~~~~g-~~~~~----~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 302 AH-KMYTDLCNKFK-QKPLS----YRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HH-HHHHHHHHHTT-CCCCC----HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HH-HHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhCCCEEEEec
Confidence 10 11111111222 11111 2334567899999999987543
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.77 E-value=4.2 Score=35.83 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=48.9
Q ss_pred CCCcEEEEEcCchHH-Hhhc-CCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhh
Q 043450 3 LPGSKIVVTTRNVSV-ARMM-RSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGN 80 (561)
Q Consensus 3 ~~GsrIivTTR~~~v-~~~~-~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~ 80 (561)
..+.++|+||+.... ...+ ..-..+++++++.++..+++...+....... -++....+++.++|.|..+..+..
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356788888876532 1111 1123899999999999999988764212111 134567888999999986655443
Q ss_pred h
Q 043450 81 L 81 (561)
Q Consensus 81 ~ 81 (561)
.
T Consensus 206 ~ 206 (226)
T 2chg_A 206 G 206 (226)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.85 E-value=8.6 Score=36.29 Aligned_cols=74 Identities=7% Similarity=0.053 Sum_probs=48.0
Q ss_pred CCcEEEEEcCchH-HHhhc-CCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChh-hHHHHhh
Q 043450 4 PGSKIVVTTRNVS-VARMM-RSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPL-AAKVTGN 80 (561)
Q Consensus 4 ~GsrIivTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPL-al~~~g~ 80 (561)
++.++|+||+... +...+ ....++++++++.++..+++...+...+... -++....+++.|+|.|. |+..+..
T Consensus 136 ~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5678888887642 21111 1124899999999999999988763211111 13457789999999994 4555544
Q ss_pred h
Q 043450 81 L 81 (561)
Q Consensus 81 ~ 81 (561)
.
T Consensus 212 ~ 212 (323)
T 1sxj_B 212 T 212 (323)
T ss_dssp H
T ss_pred H
Confidence 3
No 179
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=49.50 E-value=21 Score=34.44 Aligned_cols=167 Identities=10% Similarity=0.018 Sum_probs=84.3
Q ss_pred CcEEEEEcCchHHHhhcCC-------cceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcC---CChhh
Q 043450 5 GSKIVVTTRNVSVARMMRS-------TNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCK---GLPLA 74 (561)
Q Consensus 5 GsrIivTTR~~~v~~~~~~-------~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~---GlPLa 74 (561)
+..+|+||++......+.. ...+++++++.++..+++...+-.... ...--.+..+.+++.++ |.|-.
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~ 240 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARR 240 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHH
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHH
Confidence 5567888887654332211 248999999999999999876421000 01122445677777777 99874
Q ss_pred -HHHHhhhcc--ccccccccCCcchhHHHHHHHhhhhhhhhhhcccccchhhhcccCCCCChhhhhhhhhhcccCC-C-c
Q 043450 75 -AKVTGNLLC--DKRTGNLLSSKSIVNEWQRILDSEVWKVEEIKQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPK-D-Y 149 (561)
Q Consensus 75 -l~~~g~~L~--~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~Sy~~L~~~~~~k~cfl~~a~fp~-~-~ 149 (561)
+.++..+.. ... -...-+.+.++.+...... ..+.-.+..+++ ..+..+..++...+ + .
T Consensus 241 ~~~ll~~a~~~a~~~----~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~--~~~~il~ai~~~~~~g~~ 304 (386)
T 2qby_A 241 ALDLLRVSGEIAERM----KDTKVKEEYVYMAKEEIER----------DRVRDIILTLPF--HSKLVLMAVVSISSEENV 304 (386)
T ss_dssp HHHHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHHH----------HHHHHHHHTSCH--HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhc----CCCccCHHHHHHHHHHHhh----------chHHHHHHcCCH--HHHHHHHHHHHHHhcCCC
Confidence 443333211 000 0011233444444332211 124455667776 55666666664322 2 1
Q ss_pred ccCHHHHHHHHH----HcCCCCCCcchhHHHHHHHHHHHHHhcCCcccc
Q 043450 150 NMNKRELINLWM----AQGYLNADEDEEMEMIGEEYFNILATRSFFQEF 194 (561)
Q Consensus 150 ~i~~~~Li~~w~----a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 194 (561)
.+....+.+.+. ..| +.+.. ......+++.|...+++...
T Consensus 305 ~~~~~~l~~~~~~~~~~~g-~~~~~----~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 305 VSTTGAVYETYLNICKKLG-VEAVT----QRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CEEHHHHHHHHHHHHHHHT-CCCCC----HHHHHHHHHHHHHHTSEEEE
T ss_pred ceeHHHHHHHHHHHHHhcC-CCCCC----HHHHHHHHHHHHhCCCEEEE
Confidence 123333322211 112 11111 12345678999999999764
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=49.16 E-value=23 Score=31.40 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=44.5
Q ss_pred EEEEEcCc---------hHHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHH
Q 043450 7 KIVVTTRN---------VSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKV 77 (561)
Q Consensus 7 rIivTTR~---------~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~ 77 (561)
+||+||+. ..+...+....++++++++.++..+++...+-.... .--.+....+++.++|.+-.+..
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHH
Confidence 47777763 223323322368999999999999999887642211 11234577888999998766544
Q ss_pred H
Q 043450 78 T 78 (561)
Q Consensus 78 ~ 78 (561)
+
T Consensus 216 ~ 216 (242)
T 3bos_A 216 V 216 (242)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=43.06 E-value=36 Score=31.83 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=47.8
Q ss_pred CCCcEEEEEcCchHH-HhhcC-CcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHhh
Q 043450 3 LPGSKIVVTTRNVSV-ARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTGN 80 (561)
Q Consensus 3 ~~GsrIivTTR~~~v-~~~~~-~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g~ 80 (561)
.++.++|+||....- ...+. ....+++++++.++..+++...+...+... -.+....+++.++|.|-.+..+..
T Consensus 138 ~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 138 SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp TTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEE----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 356788888876431 11110 123799999999999999988764322111 134567888999999986554433
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=41.98 E-value=39 Score=33.70 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=46.1
Q ss_pred CCcEEEEEcCc---------hHHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhh
Q 043450 4 PGSKIVVTTRN---------VSVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLA 74 (561)
Q Consensus 4 ~GsrIivTTR~---------~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLa 74 (561)
.|..||+||.+ ..+...+....++++++++.++-.+++...+-......+ + +....|++.++|.+-.
T Consensus 226 ~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~-~---e~l~~la~~~~gn~R~ 301 (440)
T 2z4s_A 226 SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP-E---EVLNFVAENVDDNLRR 301 (440)
T ss_dssp TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC-T---THHHHHHHHCCSCHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHhcCCCHHH
Confidence 57889999886 233333444578999999999999999887632111122 2 2366788889988754
Q ss_pred H
Q 043450 75 A 75 (561)
Q Consensus 75 l 75 (561)
+
T Consensus 302 l 302 (440)
T 2z4s_A 302 L 302 (440)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=28.05 E-value=78 Score=30.17 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=45.7
Q ss_pred CCcEEEEEcCchH-HHhhcC-CcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHh
Q 043450 4 PGSKIVVTTRNVS-VARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVTG 79 (561)
Q Consensus 4 ~GsrIivTTR~~~-v~~~~~-~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~g 79 (561)
++..+|++|.+.. +...+. ....+++.+++.++..+++...+-..+... -.+....+++.++|.|..+..+.
T Consensus 148 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 148 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 3566777776432 222111 135899999999999999987652111111 13446789999999998776554
No 184
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=27.02 E-value=33 Score=18.26 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=12.7
Q ss_pred CCChhhHHHHhhhccc
Q 043450 69 KGLPLAAKVTGNLLCD 84 (561)
Q Consensus 69 ~GlPLal~~~g~~L~~ 84 (561)
.-+|||..+.++.+..
T Consensus 9 rklplavav~agv~~a 24 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCTHHHHHHHHTTCC
T ss_pred ccCchHHHHHHHHhHh
Confidence 4599999999988544
No 185
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.86 E-value=1.4e+02 Score=27.55 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=45.5
Q ss_pred CCcEEEEEcCchH-HHhhcC-CcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHH
Q 043450 4 PGSKIVVTTRNVS-VARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVT 78 (561)
Q Consensus 4 ~GsrIivTTR~~~-v~~~~~-~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~ 78 (561)
++.++|+||.... +...+. ...++++.+++.++..+++...+-..+... -.+....+++.++|.+-.+..+
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 4677888776543 222111 124899999999999999988764322211 1334677888999988765433
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.11 E-value=1e+02 Score=29.06 Aligned_cols=72 Identities=8% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCcEEEEEcCch-HHHhhcC-CcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCChhhHHHH
Q 043450 4 PGSKIVVTTRNV-SVARMMR-STNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLPLAAKVT 78 (561)
Q Consensus 4 ~GsrIivTTR~~-~v~~~~~-~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlPLal~~~ 78 (561)
++.++|+||.+. .+...+. .-..+++++++.++..+.+...+-..+...+. ++....|++.++|.+-.+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 467788887763 2222221 12589999999999999998776321111110 234678889999988555433
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=20.81 E-value=53 Score=30.85 Aligned_cols=63 Identities=3% Similarity=0.006 Sum_probs=40.7
Q ss_pred CCcEEEEEcCch---------HHHhhcCCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCCCh
Q 043450 4 PGSKIVVTTRNV---------SVARMMRSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKGLP 72 (561)
Q Consensus 4 ~GsrIivTTR~~---------~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~GlP 72 (561)
.|.+||+||.+. .+...+....++++++ +.++-.+++...+....... -++....+++++ |..
T Consensus 130 ~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l----~~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 130 LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL----RKEVIDYLLENT-KNV 201 (324)
T ss_dssp TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHC-SSH
T ss_pred CCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHhC-CCH
Confidence 466788887532 3333344446899999 99999999988774222111 134567788888 654
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.78 E-value=1.2e+02 Score=30.82 Aligned_cols=72 Identities=10% Similarity=0.155 Sum_probs=44.3
Q ss_pred cEEEEEcCchH--HHhhc-CCcceEeCCCCChhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHhhh
Q 043450 6 SKIVVTTRNVS--VARMM-RSTNIISIKPLPEDEFWSLFERFAFFGHSSVDREKLEPIARQIARKCKG-LPLAAKVTGNL 81 (561)
Q Consensus 6 srIivTTR~~~--v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~iv~~c~G-lPLal~~~g~~ 81 (561)
..||+++.+.. ....+ .....+++++++.++..+.+...+.......+ + +....|++.++| ++-|+..+...
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~-~---~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-P---NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-T---THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44666655432 11111 22358999999999999999877643222222 2 236788899999 66667666543
Done!