BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043452
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 200/413 (48%), Gaps = 47/413 (11%)
Query: 3 KFKNLKALDLSYTGINGS-----LENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLK 57
K +L+ LDLS I+G+ + + G ELK+L + GN I G + + L+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD--VSRCVNLE 200
Query: 58 VFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
+SSN S +P + ++LQ+LD+S N G F S + E +L++ +N
Sbjct: 201 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF---SRAISTCTELKLLNISSNQF 256
Query: 118 EVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHN 175
V LP L+ L L G + FL D L LDLS N G+ P + +
Sbjct: 257 -VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 176 TKLEVLRLTNNSFTGSLQLSNS-KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK 234
+ +NN F+G L + K+ L LD+S N F+G LP++++ + L+ LD+S
Sbjct: 316 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 235 NKFEGSISSSISE--MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP 292
N F G I ++ + L+ L L N F+G++ P L+ C L L LS N G +
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 293 KFMNLTQLG----WLS--------------------LDNNNFSGRISNGFLSSARSLQVL 328
+L++L WL+ LD N+ +G I +G LS+ +L +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWI 492
Query: 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
+SNN+L G+IP WIG +LA+L +S N GNIP +L + +L LD++ N
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 183/388 (47%), Gaps = 29/388 (7%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGP-LPQ-CLKNLTRLKV 58
L K + LK LDLS+ +G L +L+ L+L N GP LP C L+
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 59 FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
+ +N +G +P +++ + L L LS NY G SSLG+ S L L L N LE
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWL--NMLE 452
Query: 119 VE-TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176
E + + L+ L L +L G + L +L + LS+N+L G P W+ +
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE- 511
Query: 177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL--------- 227
L +L+L+NNSF+G++ L LD+++N F G +P M K+
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 228 -VYLDMSKNKFEGSISSSISEMKDLRFLDLSR----------NQFSGELSAPLLTGCFSL 276
VY+ K E + ++ E + +R L+R ++ G ++P S+
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
LD+S+N G + + ++ L L+L +N+ SG I + + R L +LD+S+NKL
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLD 690
Query: 337 GQIPSWIGNFSSLALLTVSKNLLEGNIP 364
G+IP + + L + +S N L G IP
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 18/311 (5%)
Query: 61 ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG-IFYLSSLGNHSNLEFFMLSLVNNTLEV 119
+S++ ++GS+ S SL LDLS N G + L+SLG+ S L+F L++ +NTL+
Sbjct: 81 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF--LNVSSNTLDF 137
Query: 120 --ETENWLPTSQLKVLHLRNCNLNGT--LGFL--QKQHDLKSLDLSHNKLVGSFPAWLLQ 173
+ L + L+VL L +++G +G++ +LK L +S NK+ G +
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VS 194
Query: 174 HNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS 233
LE L +++N+F+ + L HLDIS N +G + +ST + L L++S
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTE-LKLLNIS 252
Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
N+F G I +K L++L L+ N+F+GE+ L C +L LDLS N F G V P
Sbjct: 253 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFS-SLALL 352
F + + L L+L +NNFSG + L R L+VLD+S N+ G++P + N S SL L
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 353 TVSKNLLEGNI 363
+S N G I
Sbjct: 371 DLSSNNFSGPI 381
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 121/371 (32%), Positives = 173/371 (46%), Gaps = 33/371 (8%)
Query: 40 NAIEGPLP-QCLKNLTRLKVFGISSNQLSGSLPSVIASLT-SLQYLDLSDNYFQGIFYLS 97
N G LP L + LKV +S N+ SG LP + +L+ SL LDLS N F G L
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LP 383
Query: 98 SLGNHSNLEFFMLSLVNNTLEVETENWLP-TSQLKVLHLRNCNLNGT----LGFLQKQHD 152
+L + L L NN + L S+L LHL L+GT LG L K D
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212
LK L N L G P L+ T LE L L N TG + S L+ + +S+N
Sbjct: 444 LK---LWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 213 TGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQF----------- 261
TG +P+ + L+ L L +S N F G+I + + + + L +LDL+ N F
Sbjct: 500 TGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 262 SGELSAPLLTGCFSLWLLDLSHNSFCGQVSP--KFMNLT--QLGWLSLDNN-NFSGRISN 316
SG+++A + G +++ + C +F + QL LS N N + R+
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 317 GFLSSA----RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372
G S S+ LD+S N L G IP IG+ L +L + N + G+IP ++ +L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 373 LEILDVSENNL 383
L ILD+S N L
Sbjct: 679 LNILDLSSNKL 689
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 19/121 (15%)
Query: 275 SLWLLDLSHNSFCGQVSPKFMNLTQLG------WLSLDNN--NFSGRISNGFLSSARSLQ 326
SL LDLS NS G V+ LT LG +L++ +N +F G++S G SL+
Sbjct: 98 SLTSLDLSRNSLSGPVT----TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLE 151
Query: 327 VLDISNNKLVGQ-IPSWI--GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
VLD+S N + G + W+ L L +S N + G+ V + LE LDVS NN
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNF 209
Query: 384 S 384
S
Sbjct: 210 S 210
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 LDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGS 69
L+L + I+GS+ ++ + +L+ L L+L N ++G +PQ + LT L +S+N LSG
Sbjct: 658 LNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 70 LPSV 73
+P +
Sbjct: 717 IPEM 720
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSW--IGNFSSLALLTVSKNLLE-- 360
L N++ +G +S GF SA SL LD+S N L G + + +G+ S L L VS N L+
Sbjct: 81 LSNSHINGSVS-GFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 361 GNIPVQLKNLEALEILDVSENNLS 384
G + LK L +LE+LD+S N++S
Sbjct: 139 GKVSGGLK-LNSLEVLDLSANSIS 161
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 200/413 (48%), Gaps = 47/413 (11%)
Query: 3 KFKNLKALDLSYTGINGS-----LENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLK 57
K +L+ LDLS I+G+ + + G ELK+L + GN I G + + L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD--VSRCVNLE 203
Query: 58 VFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
+SSN S +P + ++LQ+LD+S N G F S + E +L++ +N
Sbjct: 204 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF---SRAISTCTELKLLNISSNQF 259
Query: 118 EVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHN 175
V LP L+ L L G + FL D L LDLS N G+ P + +
Sbjct: 260 -VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 176 TKLEVLRLTNNSFTGSLQLSNS-KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK 234
+ +NN F+G L + K+ L LD+S N F+G LP++++ + L+ LD+S
Sbjct: 319 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 235 NKFEGSISSSISE--MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP 292
N F G I ++ + L+ L L N F+G++ P L+ C L L LS N G +
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 293 KFMNLTQLG----WLS--------------------LDNNNFSGRISNGFLSSARSLQVL 328
+L++L WL+ LD N+ +G I +G LS+ +L +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWI 495
Query: 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
+SNN+L G+IP WIG +LA+L +S N GNIP +L + +L LD++ N
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 183/388 (47%), Gaps = 29/388 (7%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGP-LPQ-CLKNLTRLKV 58
L K + LK LDLS+ +G L +L+ L+L N GP LP C L+
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 59 FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
+ +N +G +P +++ + L L LS NY G SSLG+ S L L L N LE
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWL--NMLE 455
Query: 119 VE-TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176
E + + L+ L L +L G + L +L + LS+N+L G P W+ +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE- 514
Query: 177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL--------- 227
L +L+L+NNSF+G++ L LD+++N F G +P M K+
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 228 -VYLDMSKNKFEGSISSSISEMKDLRFLDLSR----------NQFSGELSAPLLTGCFSL 276
VY+ K E + ++ E + +R L+R ++ G ++P S+
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
LD+S+N G + + ++ L L+L +N+ SG I + + R L +LD+S+NKL
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLD 693
Query: 337 GQIPSWIGNFSSLALLTVSKNLLEGNIP 364
G+IP + + L + +S N L G IP
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 18/311 (5%)
Query: 61 ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG-IFYLSSLGNHSNLEFFMLSLVNNTLEV 119
+S++ ++GS+ S SL LDLS N G + L+SLG+ S L+F L++ +NTL+
Sbjct: 84 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF--LNVSSNTLDF 140
Query: 120 --ETENWLPTSQLKVLHLRNCNLNGT--LGFL--QKQHDLKSLDLSHNKLVGSFPAWLLQ 173
+ L + L+VL L +++G +G++ +LK L +S NK+ G +
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VS 197
Query: 174 HNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS 233
LE L +++N+F+ + L HLDIS N +G + +ST + L L++S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTE-LKLLNIS 255
Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
N+F G I +K L++L L+ N+F+GE+ L C +L LDLS N F G V P
Sbjct: 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFS-SLALL 352
F + + L L+L +NNFSG + L R L+VLD+S N+ G++P + N S SL L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 353 TVSKNLLEGNI 363
+S N G I
Sbjct: 374 DLSSNNFSGPI 384
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 121/371 (32%), Positives = 173/371 (46%), Gaps = 33/371 (8%)
Query: 40 NAIEGPLP-QCLKNLTRLKVFGISSNQLSGSLPSVIASLT-SLQYLDLSDNYFQGIFYLS 97
N G LP L + LKV +S N+ SG LP + +L+ SL LDLS N F G L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LP 386
Query: 98 SLGNHSNLEFFMLSLVNNTLEVETENWLP-TSQLKVLHLRNCNLNGT----LGFLQKQHD 152
+L + L L NN + L S+L LHL L+GT LG L K D
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212
LK L N L G P L+ T LE L L N TG + S L+ + +S+N
Sbjct: 447 LK---LWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 213 TGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQF----------- 261
TG +P+ + L+ L L +S N F G+I + + + + L +LDL+ N F
Sbjct: 503 TGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 262 SGELSAPLLTGCFSLWLLDLSHNSFCGQVSP--KFMNLT--QLGWLSLDNN-NFSGRISN 316
SG+++A + G +++ + C +F + QL LS N N + R+
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 317 GFLSSA----RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372
G S S+ LD+S N L G IP IG+ L +L + N + G+IP ++ +L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 373 LEILDVSENNL 383
L ILD+S N L
Sbjct: 682 LNILDLSSNKL 692
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 19/121 (15%)
Query: 275 SLWLLDLSHNSFCGQVSPKFMNLTQLG------WLSLDNN--NFSGRISNGFLSSARSLQ 326
SL LDLS NS G V+ LT LG +L++ +N +F G++S G SL+
Sbjct: 101 SLTSLDLSRNSLSGPVT----TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLE 154
Query: 327 VLDISNNKLVGQ-IPSWI--GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
VLD+S N + G + W+ L L +S N + G+ V + LE LDVS NN
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNF 212
Query: 384 S 384
S
Sbjct: 213 S 213
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 10 LDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGS 69
L+L + I+GS+ ++ + +L+ L L+L N ++G +PQ + LT L +S+N LSG
Sbjct: 661 LNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 70 LPSV 73
+P +
Sbjct: 720 IPEM 723
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSW--IGNFSSLALLTVSKNLLE-- 360
L N++ +G +S GF SA SL LD+S N L G + + +G+ S L L VS N L+
Sbjct: 84 LSNSHINGSVS-GFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 361 GNIPVQLKNLEALEILDVSENNLS 384
G + LK L +LE+LD+S N++S
Sbjct: 142 GKVSGGLK-LNSLEVLDLSANSIS 164
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 8/211 (3%)
Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM----S 233
L N ++ G L ++++ +++LD+S + P + + L L YL+
Sbjct: 28 LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--IPSSLANLPYLNFLYIGG 85
Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
N G I +I+++ L +L ++ SG + L+ +L LD S+N+ G + P
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
+L L ++ D N SG I + + S ++ + IS N+L G+IP N +LA +
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
+S+N+LEG+ V + + + + +++N+L+
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 126/288 (43%), Gaps = 43/288 (14%)
Query: 124 WLPTSQLKVLHLRNCNLNGTLGFL----QKQHDLKSLDLSHNKLVGSFP-AWLLQHNTKL 178
WLPT+ +C LG L + + + +LDLS L +P L + L
Sbjct: 27 WLPTT--------DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78
Query: 179 EVLRLTN-NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
L + N+ G + + +KL LH+L I+ + +G +P +S I + LV LD S N
Sbjct: 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNAL 137
Query: 238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWL--LDLSHNSFCGQVSPKFM 295
G++ SIS + +L + N+ SG + P G FS + +S N G++ P F
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 296 NLTQLGWLSLDNNNFSGRISNGFLSS----------------------ARSLQVLDISNN 333
NL L ++ L N G S F S +++L LD+ NN
Sbjct: 196 NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254
Query: 334 KLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
++ G +P + L L VS N L G IP Q NL+ ++ + N
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 32/220 (14%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
+AK L L +++T ++G++ + + ++K L+ L+ NA+ G LP + +L L
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 61 ISSNQLSGSLPSVIASLTSL-QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV 119
N++SG++P S + L + +S N G + +NL + L N LE
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT----FANLNLAFVDLSRNMLEG 211
Query: 120 ETENWLPTSQ-LKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
+ + + + +HL +L LG + +L LDL +N++ G+ P L Q
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ----- 266
Query: 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQ 218
L FLH L++S N+ G +PQ
Sbjct: 267 --------------------LKFLHSLNVSFNNLCGEIPQ 286
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRL-KVF 59
L++ K L LD SY ++G+L I L NL+ + +GN I G +P + ++L
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 60 GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG----------------------IFYLS 97
IS N+L+G +P A+L +L ++DLS N +G F L
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 98 SLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLD 157
+G NL L L NN + L +QLK LH N + N G + + +L+ D
Sbjct: 239 KVGLSKNLN--GLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294
Query: 158 LS 159
+S
Sbjct: 295 VS 296
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
KNL LDL I G+L QG+ +LK L LN+ N + G +PQ NL R V ++N
Sbjct: 244 KNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
Query: 65 Q-LSGS-LPSV 73
+ L GS LP+
Sbjct: 302 KCLCGSPLPAC 312
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 166/428 (38%), Gaps = 73/428 (17%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASL 77
SLEN I LK L ELN+ N I+ LP+ NLT L+ +SSN++ + + L
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196
Query: 78 ---------------------------TSLQYLDLSDNY---------FQGI-------F 94
L L L +N+ QG+
Sbjct: 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256
Query: 95 YLSSLGNHSNLEFF----MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ 150
L N NLE F + L N T+E +L ++ L NC N + L
Sbjct: 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316
Query: 151 HDLKSLDLSHN------KLV----GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD 200
+ D S+N +LV G FP L+ + RLT S G S L
Sbjct: 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----SLKRLTFTSNKGGNAFSEVDLP 371
Query: 201 FLHHLDISSN--SFTGRLPQ-NMSTILQKLVYLDMSKNKFEGSI--SSSISEMKDLRFLD 255
L LD+S N SF G Q + TI L YLD+S F G I SS+ ++ L LD
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLS---FNGVITMSSNFLGLEQLEHLD 426
Query: 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS 315
+ + +L LD+SH + F L+ L L + N+F
Sbjct: 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI 375
+ R+L LD+S +L P+ + SSL +L +S N K L +L++
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 376 LDVSENNL 383
LD S N++
Sbjct: 547 LDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 165/428 (38%), Gaps = 73/428 (17%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASL 77
SLEN I LK L ELN+ N I+ LP+ NLT L+ +SSN++ + + L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 78 ---------------------------TSLQYLDLSDNY---------FQGI-------F 94
L L L +N+ QG+
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 95 YLSSLGNHSNLEFF----MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ 150
L N NLE F + L N T+E +L ++ L NC N + L
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 151 HDLKSLDLSHN------KLV----GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD 200
+ D S+N +LV G FP L+ + RLT S G S L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----SLKRLTFTSNKGGNAFSEVDLP 347
Query: 201 FLHHLDISSN--SFTGRLPQ-NMSTILQKLVYLDMSKNKFEGSI--SSSISEMKDLRFLD 255
L LD+S N SF G Q + T L YLD+S F G I SS+ ++ L LD
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTT--SLKYLDLS---FNGVITMSSNFLGLEQLEHLD 402
Query: 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS 315
+ + +L LD+SH + F L+ L L + N+F
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI 375
+ R+L LD+S +L P+ + SSL +L +S N K L +L++
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 376 LDVSENNL 383
LD S N++
Sbjct: 523 LDYSLNHI 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 164/387 (42%), Gaps = 39/387 (10%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASL 77
SLEN I LK L ELN+ N I+ LP+ NLT L+ +SSN++ + + L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN--TLEVETENWLPTSQLKVLHL 135
+ L+LS + G + L+L NN +L V + L+V L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 136 RNCNLNGTLGFLQKQHDLKSLDLSH-----NKLVGSFPAWLLQHNTKLEVLRLTN----- 185
LG + + +L+ D S N + F L + +++ L N
Sbjct: 233 -------VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD-DIIDLFNCLTNV 284
Query: 186 NSFT-GSLQLSNSKLDFLH-----HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
+SF+ S+ + K DF + HL++ + F G+ P + L+ L L + NK G
Sbjct: 285 SSFSLVSVTIERVK-DFSYNFGWQHLELVNCKF-GQFP---TLKLKSLKRLTFTSNK--G 337
Query: 240 SISSSISEMKDLRFLDLSRN--QFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
+ S ++ L FLDLSRN F G S G SL LDLS N +S F+ L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGL 395
Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
QL L ++N S R+L LDIS+ SSL +L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 358 LLEGN-IPVQLKNLEALEILDVSENNL 383
+ N +P L L LD+S+ L
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQL 482
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87
EL+NL L+L +E P +L+ L+V ++SNQL + LTSLQ + L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Query: 88 N 88
N
Sbjct: 528 N 528
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAI-EGPLPQCLKNLTRLKVFGISS 63
+NL LD+S+T + N L +L L + GN+ E LP L L +S
Sbjct: 421 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 64 NQLSGSLPSVIASLTSLQYLDLSDNYFQGI 93
QL P+ SL+SLQ L+++ N + +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 129/294 (43%), Gaps = 61/294 (20%)
Query: 26 ICELKNLIELN---LEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
I LKNL LN L N I L LT L+ SSNQ++ P +A+LT+L+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL-HLRNCNLN 141
LD+S N I L+ L +NLE + + NN + T L +L +L +LN
Sbjct: 178 LDISSNKVSDISVLAKL---TNLESLIAT--NNQISDITP-------LGILTNLDELSLN 225
Query: 142 GT----LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
G +G L +L LDL++N++ P L TKL L+L G+ Q+SN
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL------GANQISN- 275
Query: 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257
IS G L L L++++N+ E S IS +K+L +L L
Sbjct: 276 ---------ISP--LAG---------LTALTNLELNENQLEDI--SPISNLKNLTYLTLY 313
Query: 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311
N S LT L+ +N+ VS NLT + WLS +N S
Sbjct: 314 FNNISDISPVSSLTKLQRLFF----YNNKVSDVS-SLANLTNINWLSAGHNQIS 362
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 19/208 (9%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
T L L L NN T L N L L+ L++SSN+ + + T LQ+L + S N
Sbjct: 107 TNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQLSF---SSN 161
Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM 295
+ ++ + L LD+S N+ S LT SL ++ N+ ++P +
Sbjct: 162 QVTDL--KPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGI 215
Query: 296 NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVS 355
LT L LSL+ N G L+S +L LD++NN++ P + + L L +
Sbjct: 216 -LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 356 KNLLEGNIPVQLKNLEALEILDVSENNL 383
N + P L L AL L+++EN L
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL 295
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 129/294 (43%), Gaps = 61/294 (20%)
Query: 26 ICELKNLIELN---LEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
I LKNL LN L N I L LT L+ SSNQ++ P +A+LT+L+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 177
Query: 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL-HLRNCNLN 141
LD+S N I L+ L +NLE + + NN + T L +L +L +LN
Sbjct: 178 LDISSNKVSDISVLAKL---TNLESLIAT--NNQISDITP-------LGILTNLDELSLN 225
Query: 142 GT----LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
G +G L +L LDL++N++ P L TKL L+L G+ Q+SN
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL------GANQISN- 275
Query: 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257
IS G L L L++++N+ E S IS +K+L +L L
Sbjct: 276 ---------ISP--LAG---------LTALTNLELNENQLEDI--SPISNLKNLTYLTLY 313
Query: 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311
N S LT L+ +N+ VS NLT + WLS +N S
Sbjct: 314 FNNISDISPVSSLTKLQRLFF----YNNKVSDVS-SLANLTNINWLSAGHNQIS 362
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 19/208 (9%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
T L L L NN T L N L L+ L++SSN+ + + T LQ+L + S N
Sbjct: 107 TNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQL---NFSSN 161
Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM 295
+ ++ + L LD+S N+ S LT SL ++ N+ ++P +
Sbjct: 162 QVTDL--KPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGI 215
Query: 296 NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVS 355
LT L LSL+ N G L+S +L LD++NN++ P + + L L +
Sbjct: 216 -LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 356 KNLLEGNIPVQLKNLEALEILDVSENNL 383
N + P L L AL L+++EN L
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL 295
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 128/294 (43%), Gaps = 61/294 (20%)
Query: 26 ICELKNLIELN---LEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
I LKNL LN L N I L LT L+ SSNQ++ P +A+LT+L+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL-HLRNCNLN 141
LD+S N I L+ L +NLE + + NN + T L +L +L +LN
Sbjct: 178 LDISSNKVSDISVLAKL---TNLESLIAT--NNQISDITP-------LGILTNLDELSLN 225
Query: 142 GT----LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
G +G L +L LDL++N++ P L TKL L+L G+ Q+SN
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL------GANQISN- 275
Query: 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257
IS G L L L++++N+ E S IS +K+L +L L
Sbjct: 276 ---------ISP--LAG---------LTALTNLELNENQLEDI--SPISNLKNLTYLTLY 313
Query: 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311
N S LT L+ N+ VS NLT + WLS +N S
Sbjct: 314 FNNISDISPVSSLTKLQRLFF----SNNKVSDVS-SLANLTNINWLSAGHNQIS 362
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 19/208 (9%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
T L L L NN T L N L L+ L++SSN+ + + T LQ+L + S N
Sbjct: 107 TNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQLSF---SSN 161
Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM 295
+ ++ + L LD+S N+ S LT SL ++ N+ ++P +
Sbjct: 162 QVTDL--KPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGI 215
Query: 296 NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVS 355
LT L LSL+ N G L+S +L LD++NN++ P + + L L +
Sbjct: 216 -LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 356 KNLLEGNIPVQLKNLEALEILDVSENNL 383
N + P L L AL L+++EN L
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQL 295
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 129/317 (40%), Gaps = 34/317 (10%)
Query: 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
K+LK L+L+Y IN + ++ L NL LNL N + L ++ + N
Sbjct: 290 KDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 65 QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
++ L LQ LDL DN I ++ S+ + + L N L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD--------IFLSGNKLVT----- 395
Query: 125 LPTSQLK--VLHLRNCNLN--GTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
LP L ++HL L L FL + L+ L L+ N+ N LE
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 181 LRLTNN--SFTGSLQLSNSKLDFLHHLDI--SSNSFTGRLPQNMSTILQKLVYLDMSKNK 236
L L N +L + L HL + ++++ LP + + L L L ++ N+
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 237 FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF-CGQVSPKFM 295
++ S +L LD+SRNQ L AP SL +LD++HN F C F+
Sbjct: 516 L--TVLSHNDLPANLEILDISRNQ----LLAPNPDVFVSLSVLDITHNKFICECELSTFI 569
Query: 296 NLTQLGWLSLDNNNFSG 312
N WL+ N +G
Sbjct: 570 N-----WLNHTNVTIAG 581
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 150/356 (42%), Gaps = 71/356 (19%)
Query: 7 LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQL 66
++ LDLS+ G SL ++ LK+L LNL N I + L L+V +S N L
Sbjct: 268 VRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 67 SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLP 126
S L + Y+DL N+ I + +T +L
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAII------------------------QDQTFKFL- 361
Query: 127 TSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN 186
+L+ L LR+ N T+ F+ D+ LS NKLV L + LT N
Sbjct: 362 -EKLQTLDLRD-NALTTIHFIPSIPDIF---LSGNKLV------------TLPKINLTAN 404
Query: 187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG-SISSSI 245
+ LS ++L+ +LDI F R+P LQ L+ +++N+F S +
Sbjct: 405 L----IHLSENRLE---NLDILY--FLLRVPH-----LQILI---LNQNRFSSCSGDQTP 447
Query: 246 SEMKDLRFLDLSRNQ----FSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG 301
SE L L L N + EL + G L +L L+HN F +LT L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 302 WLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
LSL++N + N +L++LDIS N+L+ P F SL++L ++ N
Sbjct: 508 GLSLNSNRLTVLSHNDL---PANLEILDISRNQLLAPNPDV---FVSLSVLDITHN 557
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 125/311 (40%), Gaps = 42/311 (13%)
Query: 8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLS 67
+ LDL I +L +L EL L N + P NL L+ G+ SN+L
Sbjct: 35 RLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 68 GSLPSVIASLTSLQYLDLSDN--------YFQGIFYLSSLGNHSNLEFFML--------S 111
V L++L LD+S+N FQ ++ L SL N ++ S
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 112 LVNNTLEVETENWLPTSQLKVLH------LRNCNLNGTLGF-LQKQHDLKSLDLSHNKLV 164
L TLE +PT L LH LR+ N+N + ++ + LK L++SH +
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTIL 224
+ L + L L +T+ + T L+ L +L L++S N + + +M L
Sbjct: 214 DTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHEL 271
Query: 225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS----------GEL------SAP 268
+L + + + + + LR L++S NQ + G L S P
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 269 LLTGCFSLWLL 279
L C LW+
Sbjct: 332 LACDCRLLWVF 342
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 139/322 (43%), Gaps = 53/322 (16%)
Query: 25 GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
G+ L NL ++N N + P LKNLT+L +++NQ++ P +A+LT+L L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118
Query: 85 LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
L +N I L +L N + LE + SL + + + P + L
Sbjct: 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 178
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF-- 188
L + + N + L K +L+SL ++N++ P +L T L+ L L N
Sbjct: 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 235
Query: 189 TGSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
G+L + L L LD+++N + P N+S + L L
Sbjct: 236 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
L++++N+ E S IS +K+L +L L N S LT L+ +N+
Sbjct: 292 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSD 345
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
VS NLT + WLS +N S
Sbjct: 346 VS-SLANLTNINWLSAGHNQIS 366
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
T L L L NN T L N L L+ L++SSN+ + + T LQ+L
Sbjct: 112 TNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQL-------- 161
Query: 236 KFEGSISS--SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
F ++ ++ + L LD+S N+ S LT SL ++ N+ ++P
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPL 217
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
+ LT L LSL+ N G L+S +L LD++NN++ P + + L L
Sbjct: 218 GI-LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271
Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNL 383
+ N + P L L AL L+++EN L
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQL 299
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 53/322 (16%)
Query: 25 GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
G+ L NL ++N N + P LKNLT+L +++NQ++ P +A+LT+L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 85 LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
L +N I L +L N + LE + SL + + P + L
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT- 189
L + + N + L K +L+SL ++N++ P +L T L+ L L N
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 230
Query: 190 -GSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
G+L + L L LD+++N + P N+S + L L
Sbjct: 231 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
L++++N+ E S IS +K+L +L L N S LT L+ +N+
Sbjct: 287 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSD 340
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
VS NLT + WLS +N S
Sbjct: 341 VS-SLANLTNINWLSAGHNQIS 361
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
T L L L NN T L N L L+ L++SSN+ + + T LQ+L
Sbjct: 107 TNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQL-------- 156
Query: 236 KFEGSISS--SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
F ++ ++ + L LD+S N+ S LT SL ++ N+ ++P
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPL 212
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
+ LT L LSL+ N G L+S +L LD++NN++ P + + L L
Sbjct: 213 GI-LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 266
Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNL 383
+ N + P L L AL L+++EN L
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQL 294
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
L+ L+++KN + + S + LR LDL N+ +LS G +++ + LS+N +
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSG-RISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
+ F + L L L IS R+L +LD+SNN +
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIAN-------- 494
Query: 346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
++++LLEG LE LEILD NNL+
Sbjct: 495 --------INEDLLEG--------LENLEILDFQHNNLA 517
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 57/304 (18%)
Query: 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
K+ NL LDLSY ++ + N L +L L+LE N I+ P+ L+ L+ +
Sbjct: 246 KWTNLTQLDLSYNNLH-DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK 304
Query: 63 SNQLSGSL-----PSV----IASLTSLQYLDLSD--------NYFQGIF---YLSSLGNH 102
S+ P++ L L+YL++ D N F G+ YLS
Sbjct: 305 RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTF 364
Query: 103 SNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK 162
++L+ +L N T + L T L H+ NGT +L + L+ LDL N+
Sbjct: 365 TSLQ----TLTNETFVSLAHSPLLTLNLTKNHISKI-ANGTFSWLGQ---LRILDLGLNE 416
Query: 163 LVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMST 222
+ +L+ + G + L + +L +S++SF +P
Sbjct: 417 IEQ----------------KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF-ALVPSLQRL 459
Query: 223 ILQKLVY--LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280
+L+++ +D+S + F +++L LDLS N + ++ LL G +L +LD
Sbjct: 460 MLRRVALKNVDISPSPFR--------PLRNLTILDLSNNNIAN-INEDLLEGLENLEILD 510
Query: 281 LSHN 284
HN
Sbjct: 511 FQHN 514
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 169/447 (37%), Gaps = 114/447 (25%)
Query: 40 NAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSL 99
N+I P+ + L LKV + N+LS T+L LDL N I +
Sbjct: 59 NSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI-KSNPF 117
Query: 100 GNHSNLEFFMLSLVNNTLE---------VETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ 150
N NL L L +N L +E L ++ K+L LR + L FL
Sbjct: 118 KNQKNL--IKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALR----SEELEFLGNS 171
Query: 151 HDLKSLDLSHNKL----------VGSFPAWLLQH----------------NTKLEVLRLT 184
L+ LDLS N L +G A LL + NT ++ L L
Sbjct: 172 -SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 185 NNSFTGSLQLSNSKLDF--LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
NN + + + S L + L LD+S N+ + + L L YL + N +
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHD-VGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 243 SSISEMKDLRFLDLSR---NQFSGELSAPLLTGCFSLWLLDLSH-------------NSF 286
S + +LR+L L R Q S P + WL L + N+F
Sbjct: 290 RSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTF 349
Query: 287 CGQVSPKFMNLTQ--------------------LGWLSLDNNNFSGRISNGFLSSARSLQ 326
G VS K+++L++ L L+L N+ S +I+NG S L+
Sbjct: 350 TGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHIS-KIANGTFSWLGQLR 408
Query: 327 VLDISNN----KLVGQIPSWIG-----------------NFSSLALLTVSKNLLEGNI-- 363
+LD+ N KL GQ W G + SS AL+ + L+ +
Sbjct: 409 ILDLGLNEIEQKLSGQ--EWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVAL 466
Query: 364 ------PVQLKNLEALEILDVSENNLS 384
P + L L ILD+S NN++
Sbjct: 467 KNVDISPSPFRPLRNLTILDLSNNNIA 493
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 53/322 (16%)
Query: 25 GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
G+ L NL ++N N + P LKNLT+L +++NQ++ P +A+LT+L L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 117
Query: 85 LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
L +N I L +L N + LE + SL + + + P + L
Sbjct: 118 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 177
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT- 189
L + + N + L K +L+SL ++N++ P +L T L+ L L N
Sbjct: 178 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 234
Query: 190 -GSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
G+L + L L LD+++N + P N+S + L L
Sbjct: 235 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
L++++N+ E S IS +K+L +L L N S LT L+ N+
Sbjct: 291 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----ANNKVSD 344
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
VS NLT + WLS +N S
Sbjct: 345 VS-SLANLTNINWLSAGHNQIS 365
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
T L L L NN T L N L L+ L++SSN+ + + T LQ+L
Sbjct: 111 TNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQL-------- 160
Query: 236 KFEGSISS--SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
F ++ ++ + L LD+S N+ S LT SL ++ N+ ++P
Sbjct: 161 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPL 216
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
+ LT L LSL+ N G L+S +L LD++NN++ P + + L L
Sbjct: 217 GI-LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 270
Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNL 383
+ N + P L L AL L+++EN L
Sbjct: 271 LGANQISNISP--LAGLTALTNLELNENQL 298
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 137/322 (42%), Gaps = 53/322 (16%)
Query: 25 GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
G+ L NL ++N N + P LKNLT+L +++NQ++ P +A+LT+L L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 85 LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
L +N I L +L N + LE + SL + + P + L
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT- 189
L + + N + L K +L+SL ++N++ P +L T L+ L L N
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 230
Query: 190 -GSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
G+L + L L LD+++N + P N+S + L L
Sbjct: 231 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
L++++N+ E S IS +K+L +L L N S LT L+ N+
Sbjct: 287 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----SNNKVSD 340
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
VS NLT + WLS +N S
Sbjct: 341 VS-SLANLTNINWLSAGHNQIS 361
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
T L L L NN T L N L L+ L++SSN+ + + T LQ+L
Sbjct: 107 TNLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQL-------- 156
Query: 236 KFEGSISS--SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
F ++ ++ + L LD+S N+ S LT SL ++ N+ ++P
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPL 212
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
+ LT L LSL+ N G L+S +L LD++NN++ P + + L L
Sbjct: 213 GI-LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 266
Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNL 383
+ N + P L L AL L+++EN L
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQL 294
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 2 AKFKNLKALDLSYTGINGSLENQGICE-LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
+ K+L+ LD+S ++ E +G C K+L+ LN+ N + + +CL R+KV
Sbjct: 371 TQMKSLQQLDISQNSVSYD-EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427
Query: 61 ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI 93
+ SN++ S+P + L +LQ L+++ N + +
Sbjct: 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 31/170 (18%)
Query: 194 LSNSKLDFLHHLDISSNSFTGRLPQNMS--TILQKLVYLDMSKNKFEGSISSSISEMKDL 251
L SK+ HLD S+N T + +N T L+ L+ L M++ K I+ ++MK L
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI-LQMNQLKELSKIAEMTTQMKSL 376
Query: 252 RFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311
+ LD+S+N S + + SL L++S N +
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--------------------- 415
Query: 312 GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361
F ++VLD+ +NK + IP + +L L V+ N L+
Sbjct: 416 ------FRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKS 458
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 179/431 (41%), Gaps = 77/431 (17%)
Query: 1 LAKFKNLKALDLSYTGINGS---------------LENQGICELKN----------LIEL 35
K KNL LDLS+ G++ + L N I LK+ L +L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Query: 36 NLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIA---SLTSLQYLDLSDNYFQG 92
L N I+ P C + RL +++ QL SL + + TS++ L LS++
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 93 IFYLSSLG-NHSNLEFFMLSLVNNTLEV---ETENWLPTSQL------KVLHLRNCNLNG 142
+ LG +NL ML L N L V ++ WLP + + HL + +L+G
Sbjct: 237 TSNTTFLGLKWTNLT--MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294
Query: 143 TLGF----LQKQHDLKSLDLSHNKLVGSFP-AWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
L++ +S+ L+ + F WL LE L + +N G +
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL----KCLEHLNMEDNDIPGIKSNMFT 350
Query: 198 KLDFLHHLDISSNSFTG-RLPQN---MSTILQKLVYLDMSKNKFEGSISSSISEMKDLRF 253
L L +L +S NSFT R N +S L L+++KNK S + S + L
Sbjct: 351 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 254 LDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGR 313
LDL N+ EL+ G +++ + LS+N K++ LT R
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYN--------KYLQLT--------------R 447
Query: 314 ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL 373
S + S + L + ++ K V PS +L +L +S N + L+ LE L
Sbjct: 448 NSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506
Query: 374 EILDVSENNLS 384
EILD+ NNL+
Sbjct: 507 EILDLQHNNLA 517
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 54/381 (14%)
Query: 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI- 61
K+ NL LDLSY +N + N L L LE N I+ L L ++ +
Sbjct: 246 KWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 62 ---SSNQLS-GSLPSV----IASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLV 113
+ +S SLP + L L++L++ DN GI + NL++ LSL
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKY--LSLS 361
Query: 114 NN-----TLEVETENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKSLDLSHNKLVGS 166
N+ TL ET L S L +L+L ++ + F H L+ LDL N+ +G
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNE-IGQ 419
Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
LT + G + L + +L ++ NSF + LQ+
Sbjct: 420 ---------------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA------LVPSLQR 458
Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
L+ ++ + S S +++L LDLS N + +L G L +LDL HN+
Sbjct: 459 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNL 516
Query: 287 C---GQVSPK-----FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338
+P L+ L L+L++N F I L+++D+ N L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 575
Query: 339 IPSWIGNFSSLALLTVSKNLL 359
S N SL L + KNL+
Sbjct: 576 PASVFNNQVSLKSLNLQKNLI 596
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 179/431 (41%), Gaps = 77/431 (17%)
Query: 1 LAKFKNLKALDLSYTGINGS---------------LENQGICELKN----------LIEL 35
K KNL LDLS+ G++ + L N I LK+ L +L
Sbjct: 127 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 186
Query: 36 NLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIA---SLTSLQYLDLSDNYFQG 92
L N I+ P C + RL +++ QL SL + + TS++ L LS++
Sbjct: 187 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 246
Query: 93 IFYLSSLG-NHSNLEFFMLSLVNNTLEV---ETENWLPTSQL------KVLHLRNCNLNG 142
+ LG +NL ML L N L V ++ WLP + + HL + +L+G
Sbjct: 247 TSNTTFLGLKWTNLT--MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 304
Query: 143 TLGF----LQKQHDLKSLDLSHNKLVGSFP-AWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
L++ +S+ L+ + F WL LE L + +N G +
Sbjct: 305 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL----KCLEHLNMEDNDIPGIKSNMFT 360
Query: 198 KLDFLHHLDISSNSFTG-RLPQN---MSTILQKLVYLDMSKNKFEGSISSSISEMKDLRF 253
L L +L +S NSFT R N +S L L+++KNK S + S + L
Sbjct: 361 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 419
Query: 254 LDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGR 313
LDL N+ EL+ G +++ + LS+N K++ LT R
Sbjct: 420 LDLGLNEIGQELTGQEWRGLENIFEIYLSYN--------KYLQLT--------------R 457
Query: 314 ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL 373
S + S + L + ++ K V PS +L +L +S N + L+ LE L
Sbjct: 458 NSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 516
Query: 374 EILDVSENNLS 384
EILD+ NNL+
Sbjct: 517 EILDLQHNNLA 527
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 54/381 (14%)
Query: 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI- 61
K+ NL LDLSY +N + N L L LE N I+ L L ++ +
Sbjct: 256 KWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 314
Query: 62 ---SSNQLS-GSLPSV----IASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLV 113
+ +S SLP + L L++L++ DN GI + NL++ LSL
Sbjct: 315 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKY--LSLS 371
Query: 114 NN-----TLEVETENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKSLDLSHNKLVGS 166
N+ TL ET L S L +L+L ++ + F H L+ LDL N+ +G
Sbjct: 372 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNE-IGQ 429
Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
LT + G + L + +L ++ NSF + LQ+
Sbjct: 430 ---------------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA------LVPSLQR 468
Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
L+ ++ + S S +++L LDLS N + +L G L +LDL HN+
Sbjct: 469 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNL 526
Query: 287 C---GQVSPK-----FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338
+P L+ L L+L++N F I L+++D+ N L
Sbjct: 527 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 585
Query: 339 IPSWIGNFSSLALLTVSKNLL 359
S N SL L + KNL+
Sbjct: 586 PASVFNNQVSLKSLNLQKNLI 606
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQ-CLKNLTRLKVFGI 61
K NL L+L++ + SL +L NL EL+L N ++ LP+ LT+LK +
Sbjct: 131 KLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRL 188
Query: 62 SSNQLSGSLPSVIASLTSLQYLDLSDNYFQ----GIFYLSS-LGNHSNL 105
NQL V LTSLQY+ L DN + GI YLS + HS +
Sbjct: 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 237
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 93/226 (41%), Gaps = 46/226 (20%)
Query: 24 QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQY 82
QGI L N+ L L GN + LK LT L ++ NQL SLP+ V LT+L+
Sbjct: 57 QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE 113
Query: 83 LDLSDNYFQ----GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNC 138
L L +N Q G+F +NL + L+L +N L+ LP
Sbjct: 114 LVLVENQLQSLPDGVF-----DKLTNLTY--LNLAHNQLQS-----LPK----------- 150
Query: 139 NLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSK 198
G K +L LDLS+N+L S P + T+L+ LRL N +
Sbjct: 151 ------GVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 199 LDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSS 244
L L ++ + N + P + YL NK G + +S
Sbjct: 204 LTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNS 241
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 20 SLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTS 79
SL N +L NL EL L N ++ LT L ++ NQL V LT+
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 80 LQYLDLSDNYFQ----GIF 94
L LDLS N Q G+F
Sbjct: 159 LTELDLSYNQLQSLPEGVF 177
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 179/431 (41%), Gaps = 77/431 (17%)
Query: 1 LAKFKNLKALDLSYTGINGS---------------LENQGICELKN----------LIEL 35
K KNL LDLS+ G++ + L N I LK+ L +L
Sbjct: 122 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 181
Query: 36 NLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIA---SLTSLQYLDLSDNYFQG 92
L N I+ P C + RL +++ QL SL + + TS++ L LS++
Sbjct: 182 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 241
Query: 93 IFYLSSLG-NHSNLEFFMLSLVNNTLEV---ETENWLPTSQL------KVLHLRNCNLNG 142
+ LG +NL ML L N L V ++ WLP + + HL + +L+G
Sbjct: 242 TSNTTFLGLKWTNLT--MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 299
Query: 143 TLGF----LQKQHDLKSLDLSHNKLVGSFP-AWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
L++ +S+ L+ + F WL LE L + +N G +
Sbjct: 300 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL----KCLEHLNMEDNDIPGIKSNMFT 355
Query: 198 KLDFLHHLDISSNSFTG-RLPQN---MSTILQKLVYLDMSKNKFEGSISSSISEMKDLRF 253
L L +L +S NSFT R N +S L L+++KNK S + S + L
Sbjct: 356 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 414
Query: 254 LDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGR 313
LDL N+ EL+ G +++ + LS+N K++ LT R
Sbjct: 415 LDLGLNEIGQELTGQEWRGLENIFEIYLSYN--------KYLQLT--------------R 452
Query: 314 ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL 373
S + S + L + ++ K V PS +L +L +S N + L+ LE L
Sbjct: 453 NSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 511
Query: 374 EILDVSENNLS 384
EILD+ NNL+
Sbjct: 512 EILDLQHNNLA 522
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 54/381 (14%)
Query: 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI- 61
K+ NL LDLSY +N + N L L LE N I+ L L ++ +
Sbjct: 251 KWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309
Query: 62 ---SSNQLS-GSLPSV----IASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLV 113
+ +S SLP + L L++L++ DN GI + NL++ LSL
Sbjct: 310 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKY--LSLS 366
Query: 114 NN-----TLEVETENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKSLDLSHNKLVGS 166
N+ TL ET L S L +L+L ++ + F H L+ LDL N+ +G
Sbjct: 367 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNE-IGQ 424
Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
LT + G + L + +L ++ NSF + LQ+
Sbjct: 425 ---------------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA------LVPSLQR 463
Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
L+ ++ + S S +++L LDLS N + +L G L +LDL HN+
Sbjct: 464 LMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNL 521
Query: 287 C---GQVSPK-----FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338
+P L+ L L+L++N F I L+++D+ N L
Sbjct: 522 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 580
Query: 339 IPSWIGNFSSLALLTVSKNLL 359
S N SL L + KNL+
Sbjct: 581 PASVFNNQVSLKSLNLQKNLI 601
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 126/315 (40%), Gaps = 61/315 (19%)
Query: 34 ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLS--GSLPSVIASLTSLQYLDLSDNYFQ 91
L LE N ++ LT+L +SSN LS G TSL+YLDLS F
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FN 88
Query: 92 GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF--LQK 149
G+ +SS N+L QL+ L ++ NL F
Sbjct: 89 GVITMSS------------------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 150 QHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS 209
+L LD+SH +F + + LEVL++ NSF +
Sbjct: 125 LRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENF----------------- 166
Query: 210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
LP ++ T L+ L +LD+S+ + E ++ + + L+ L++S N F + P
Sbjct: 167 ------LP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
Query: 270 LTGCF-SLWLLDLSHNSFCGQVSPKFMNL-TQLGWLSLDNNNFSGRISN-GFLSSARSLQ 326
C SL +LD S N + + + L +L+L N+F+ + FL + +
Sbjct: 220 --KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 277
Query: 327 VLDISNNKLVGQIPS 341
L + ++ PS
Sbjct: 278 QLLVEVERMECATPS 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 198 KLDFLHHLDISSN--SFTGRLPQ-NMSTILQKLVYLDMSKNKFEGSI--SSSISEMKDLR 252
KL L L +SSN SF G Q + T L YLD+S F G I SS+ ++ L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTT--SLKYLDLS---FNGVITMSSNFLGLEQLE 104
Query: 253 FLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG 312
LD + + +L LD+SH + F L+ L L + N+F
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164
Query: 313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372
+ R+L LD+S +L P+ + SSL +L +S N K L +
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224
Query: 373 LEILDVSENNL 383
L++LD S N++
Sbjct: 225 LQVLDYSLNHI 235
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 5 KNLKALDLSYT----GINGSLENQGICELKNLIELNLEGNAI-EGPLPQCLKNLTRLKVF 59
+NL LD+S+T NG L +L L + GN+ E LP L L
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 60 GISSNQLSGSLPSVIASLTSLQYLDLSDNYF 90
+S QL P+ SL+SLQ L++S N F
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCL--------------- 50
+L+ LD+S +N ++ ++++ LNL N + G + +CL
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM 463
Query: 51 ---KNLTRLKVF---GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ----GIFYLSS-L 99
K++T L+ ++SNQL V LTSLQY+ L DN + GI YLS +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 523
Query: 100 GNHSNL 105
HS +
Sbjct: 524 NKHSGV 529
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF-SLWLLDLSHNS 285
+L+ ++N F S+ S +K L+ L L RN L+T SL LD+S NS
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 286 FCGQVSPKFMNLTQ-LGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIG 344
+ + + L+L +N +G + F ++VLD+ NN+++ IP +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMS-IPKDVT 470
Query: 345 NFSSLALLTVSKNLLEG 361
+ +L L V+ N L+
Sbjct: 471 HLQALQELNVASNQLKS 487
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 24 QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83
+GI L NLI L L+ N I P LKNLT++ +S N L S IA L S++ L
Sbjct: 63 EGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 118
Query: 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSL 112
DL+ + L+ L SNL+ L L
Sbjct: 119 DLTSTQITDVTPLAGL---SNLQVLYLDL 144
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 32 LIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ 91
L L L GN++ LP +KNL+ L+V +S N+L+ SLP+ + S L+Y DN
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 92 GIFYLSSLGNHSNLEFFMLSLVNNTLE 118
+ + GN NL+F L + N LE
Sbjct: 307 TLPW--EFGNLCNLQF--LGVEGNPLE 329
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 146/340 (42%), Gaps = 57/340 (16%)
Query: 24 QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83
+G+C++ ++ +NL+ + + TR++ +++ L+G LPS I + SL+ L
Sbjct: 248 EGLCDM-SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKL 305
Query: 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT 143
L+ N F + +++ S + ++ ++R +L GT
Sbjct: 306 VLNANSFDQLCQINAASFPSLRDLYIKG----------------------NMRKLDL-GT 342
Query: 144 LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK-LEVLRLTNNSFTGSLQLSNSKLDFL 202
L+K +L+ LDLSH+ + S L N + L+ L L+ N G + + L
Sbjct: 343 -RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQL 401
Query: 203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS 262
LD++ + P + L L L++S + S ++ ++DLR L+L N F
Sbjct: 402 ELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 263 -------------GELSAPLLTGCFSLWL-------------LDLSHNSFCGQVSPKFMN 296
G L +L+ C L + LDLSHNS G +
Sbjct: 462 DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSH 521
Query: 297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQ-VLDISNNKL 335
L L +L++ +NN RI L A S Q ++++S+N L
Sbjct: 522 LKGL-YLNMASNNI--RIIPPHLLPALSQQSIINLSHNPL 558
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 53/238 (22%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
L K +NL+ LDLS++ I S C L+ LKNL L+
Sbjct: 345 LEKLENLQKLDLSHSDIEAS----DCCNLQ-------------------LKNLRHLQYLN 381
Query: 61 ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
+S N+ G L+ LD++ +L HS + L
Sbjct: 382 LSYNEPLGLEDQAFKECPQLELLDVA------FTHLHVKAPHSPFQNLHL---------- 425
Query: 121 TENWLPTSQLKVLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLV-GSFPAW-LLQHNTK 177
L+VL+L +C L+ + L DL+ L+L N GS LLQ
Sbjct: 426 ---------LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGS 476
Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
LE+L L++ + Q + L ++HLD+S NS TG +S + K +YL+M+ N
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL--KGLYLNMASN 532
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 24 QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83
+G+ L NLI L L+ N I P LKNLT++ +S N L S IA L S++ L
Sbjct: 57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112
Query: 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSL 112
DL+ + L+ L SNL+ L L
Sbjct: 113 DLTSTQITDVTPLAGL---SNLQVLYLDL 138
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87
+L NL EL L+ N ++ P+ +LT+L + N+L V LTSL+ L L +
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 88 NYFQGIFYLSSLGNHSNL-EFFMLSLVNNTLEVETENWLPT-SQLKVLHLR----NCNLN 141
N + + G L E L L NN L+ E + +LK+L L+ +C N
Sbjct: 167 NQLKRV----PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222
Query: 142 GTL---GFLQKQHD 152
G + +L+K+ D
Sbjct: 223 GIIYMAKWLKKKAD 236
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 31/221 (14%)
Query: 34 ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG- 92
+L+L+ N + + LT+L++ ++ N+L + L +L+ L ++DN Q
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 93 -IFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQH 151
I L N + L L +QLK L R
Sbjct: 101 PIGVFDQLVNLAELR------------------LDRNQLKSLPPR---------VFDSLT 133
Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
L L L +N+L S P + T L+ LRL NN + + KL L L + +N
Sbjct: 134 KLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLR 252
R+P+ L+KL L + +N ++ + + I K L+
Sbjct: 193 LK-RVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 73/206 (35%), Gaps = 52/206 (25%)
Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG-------------SLQLSNSK 198
D K LDL NKL S P+ TKL +L L +N +L ++++K
Sbjct: 38 DTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 199 LDFL-----------HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISE 247
L L L + N LP + L KL YL + N+ + +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 248 MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307
+ L+ L L NQ + G F LT+L L LDN
Sbjct: 156 LTSLKELRLYNNQLKR-----VPEGAFD--------------------KLTELKTLKLDN 190
Query: 308 NNFSGRISNGFLSSARSLQVLDISNN 333
N R+ G S L++L + N
Sbjct: 191 NQLK-RVPEGAFDSLEKLKMLQLQEN 215
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 177/442 (40%), Gaps = 91/442 (20%)
Query: 7 LKALDLSYTGIN--GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
+K+LDLS+ I G + + L+ LI + N IEG +L L+ +S N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSDN 84
Query: 65 QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
LS S L+SL+YL+L N +Q + S N +NL+ + V E+ ++
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 125 -----LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
L ++K L LRN + +L ++ H L +L LS + + A +L LE
Sbjct: 145 AGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHL-TLHLSESAFLLEIFADILSSVRYLE 202
Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSN----SFTGRL--PQNMSTILQKLVY-LDM 232
LR TN Q S +D ++SS +F G + ++ + +L+ L Y L++
Sbjct: 203 -LRDTN---LARFQFSPLPVD-----EVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253
Query: 233 SKNKFEG-----------SISSSISEMKDLR--------------FLDLSR--------N 259
S+ +F+ S S +SE+ + F DLS
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 260 QFSGELSAPLLTGCF------SLWLLDLSH---------NSFCGQVSPKFMNLTQLGWLS 304
+ + E S L C SL LDLS NS C P L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV------ 367
Query: 305 LDNNNFSGRISNG-FLSSARSLQVLDISNNKLVGQIPS--WIGNFSSLALLTVSKNLLEG 361
L N+ G L + ++L LDIS N S W L L + +++
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427
Query: 362 NIPVQLKNLEALEILDVSENNL 383
IP + LE+LDVS NNL
Sbjct: 428 CIP------QTLEVLDVSNNNL 443
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 122/339 (35%), Gaps = 58/339 (17%)
Query: 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLP-SVIASLTSLQYLDLS 86
E+ L + NL+G + G K LT L++ + N + P S ++ LDL+
Sbjct: 106 EVLTLTQCNLDGAVLSGNF---FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF 146
N + I L N F +L L + TL+ E WL + G
Sbjct: 163 FNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC--------------GN 207
Query: 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQH--NTKLEVLRLTNNSFTGSLQLSNSKLDFLHH 204
K + +LDLS N S TK++ L L+N+ GS +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS------SFGHTNF 261
Query: 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQ---- 260
D + +F G + T D+SK+K + S S DL L L++N+
Sbjct: 262 KDPDNFTFKGLEASGVKTC-------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 261 -------------------FSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG 301
F G + + + L +LDLS+N F+ L L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Query: 302 WLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP 340
L+LD N + +G SLQ + + N P
Sbjct: 375 ELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288
Y+D+S N +S S ++DL+FL + + + G SL +L L +N F
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNG-FLSSARSLQVLDISNNKLVGQIPS 341
+ F L L L+L N G + +G F SL++L + +N + P+
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 114 NNTLEVETENWLPTSQLKVLHLRNCNLNGTL---GFLQKQHDLKSLDLSHNKLVGSFPAW 170
N L++ET + + L+VL L CNL+G + F + L+ L L N + PA
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 171 LLQHNTKLEVLRLTNN 186
+ + VL LT N
Sbjct: 149 FFLNMRRFHVLDLTFN 164
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 177/442 (40%), Gaps = 91/442 (20%)
Query: 7 LKALDLSYTGIN--GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
+K+LDLS+ I G + + L+ LI + N IEG +L L+ +S N
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSDN 110
Query: 65 QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
LS S L+SL+YL+L N +Q + S N +NL+ + V E+ ++
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 170
Query: 125 -----LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
L ++K L LRN + +L ++ H L +L LS + + A +L LE
Sbjct: 171 AGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHL-TLHLSESAFLLEIFADILSSVRYLE 228
Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSN----SFTGRL--PQNMSTILQKLVY-LDM 232
LR TN Q S +D ++SS +F G + ++ + +L+ L Y L++
Sbjct: 229 -LRDTN---LARFQFSPLPVD-----EVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 279
Query: 233 SKNKFEG-----------SISSSISEMKDLR--------------FLDLSR--------N 259
S+ +F+ S S +SE+ + F DLS
Sbjct: 280 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 339
Query: 260 QFSGELSAPLLTGCF------SLWLLDLSH---------NSFCGQVSPKFMNLTQLGWLS 304
+ + E S L C SL LDLS NS C P L
Sbjct: 340 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV------ 393
Query: 305 LDNNNFSGRISNG-FLSSARSLQVLDISNNKLVGQIPS--WIGNFSSLALLTVSKNLLEG 361
L N+ G L + ++L LDIS N S W L L + +++
Sbjct: 394 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT 453
Query: 362 NIPVQLKNLEALEILDVSENNL 383
IP + LE+LDVS NNL
Sbjct: 454 CIP------QTLEVLDVSNNNL 469
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 147/365 (40%), Gaps = 73/365 (20%)
Query: 50 LKNLTRLKVFGISSNQLSG-----SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNH-S 103
L LT L S ++G L +I + ++ LDLS N + YL+ N +
Sbjct: 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQN--TNLTYLACDSNKLT 98
Query: 104 NLEFFMLSLVNNTLEVETENW--LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHN 161
NL+ L+ + L +T L SQ +L NC N L +D+SHN
Sbjct: 99 NLDVTPLTKLT-YLNCDTNKLTKLDVSQNPLLTYLNCARNT----------LTEIDVSHN 147
Query: 162 KLVGSFPAWLLQHNTKLEVLRLT-----NNSFTGSLQLSNSKLDFLHHLDISSNSFTG-R 215
+ L + TKL+V T + SF +L S+ L+ L+ +N+ T
Sbjct: 148 TQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD 207
Query: 216 LPQNMS----------------TILQKLVYLDMSKNKFEGSISSSISEM-------KDLR 252
L QN+ T L +L Y D S N S++S++ DL
Sbjct: 208 LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL 267
Query: 253 FLDLSRNQ----FSGELSAPLLTGCFSLWLLDLSHNS-----FCGQVSPKFMNLTQ---L 300
+DL+ N F E GC + LD++HN+ C ++L+Q L
Sbjct: 268 EIDLTHNTQLIYFQAE-------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320
Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLD--ISNNKLVGQIPSWIGNFSSLA-LLTVSKN 357
+L L+N + + + +SL ++ I + VG+IP+ NF + +T+ K
Sbjct: 321 VYLYLNNTELT-ELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKE 379
Query: 358 LLEGN 362
L N
Sbjct: 380 TLTNN 384
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 130/309 (42%), Gaps = 47/309 (15%)
Query: 4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
F L+ LDL+ T + S G+ L L +L L N E N L I
Sbjct: 277 FSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334
Query: 64 NQLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLS-SLGNHSNLEFFMLSLVNNTLEVET 121
N L + + +L +L+ LDLS + + + L N S+L+ LS N L ++T
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS-YNEPLSLKT 393
Query: 122 ENWLPTSQLKVLHLRNCNLN--GTLGFLQKQHDLKSLDLSHN-------KLVGSFPAWLL 172
E + QL++L L L Q H LK L+LSH+ +L PA L
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA--L 451
Query: 173 QH----------------NT-----KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
QH N+ +LE+L L+ + Q + + L ++H+D+S N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
T + +S + K +YL+++ N + S + + R ++L +N PL
Sbjct: 512 LTSSSIEALSHL--KGIYLNLASNHISIILPSLLPILSQQRTINLRQN--------PLDC 561
Query: 272 GCFSLWLLD 280
C +++ L+
Sbjct: 562 TCSNIYFLE 570
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 14/189 (7%)
Query: 202 LHHLDISSNSFTGRLPQNMS--TILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRN 259
L LD+++ + LP + + L+KLV +S NKFE S S L L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLV---LSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 260 QFSGELSAPLLTGCFSLWLLDLSHN----SFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS 315
EL L +L LDLSH+ S C + + NL+ L L+L N +
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEPLSLKT 393
Query: 316 NGFLSSARSLQVLDISNNKL-VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALE 374
F L++LD++ +L V S N L +L +S +LL+ + L AL+
Sbjct: 394 EAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 375 ILDVSENNL 383
L++ N+
Sbjct: 453 HLNLQGNHF 461
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 24/192 (12%)
Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212
L+ LDL+ L P+ L+ +T L+ L L+ N F Q+S S L HL I N+
Sbjct: 280 LQELDLTATHL-SELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 213 TGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS--EMKDLRFLDLSRNQFSGELSAPLL 270
L L+ L LD+S + E S ++ + L+ L+LS N+ L
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAF 396
Query: 271 TGCFSLWLLDLSHNSF-CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
C L LLDL+ F NL L L+L S +LD
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL------------------SHSLLD 438
Query: 330 ISNNKLVGQIPS 341
IS+ +L +P+
Sbjct: 439 ISSEQLFDGLPA 450
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
K +L L+LS + SL N +L L EL L N ++ LT+LK +
Sbjct: 74 KLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 63 SNQLSGSLPSVIASLTSLQYLDLSDNYFQ----GIFYLSS-LGNHSNL 105
NQL V LTSLQY+ L DN + GI YLS + HS +
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 180
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 20 SLENQGICELKNLIELNLEGNAIEGPLPQCLKN-LTRLKVFGISSNQLSGSLP-SVIASL 77
SL N EL +L +L L GN ++ LP + N LT L +S+NQL SLP V L
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKL 99
Query: 78 TSLQYLDLSDNYFQ----GIF 94
T L+ L L+ N Q G+F
Sbjct: 100 TQLKELALNTNQLQSLPDGVF 120
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 118/291 (40%), Gaps = 64/291 (21%)
Query: 52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY--FQGIFYLSSLGNHSNLEFFM 109
+L LK ++ N+ GS+ +L SL YLDLS N F G S LG +S
Sbjct: 321 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS---LRH 375
Query: 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHN--KLVGSF 167
L L N + + N+ +G + QH LD H+ K V F
Sbjct: 376 LDLSFNGAIIMSANF-------------------MGLEELQH----LDFQHSTLKRVTEF 412
Query: 168 PAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
A+L LE L + S+T N+K+DF F G L L
Sbjct: 413 SAFL-----SLEKLLYLDISYT------NTKIDF-------DGIFLG---------LTSL 445
Query: 228 VYLDMSKNKF-EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
L M+ N F + ++S+ + +L FLDLS+ Q ++S + L LL++SHN+
Sbjct: 446 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNL 504
Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS-ARSLQVLDISNNKLV 336
S + L L L N S G L +SL +++NN +
Sbjct: 505 LFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFPKSLAFFNLTNNSVA 553
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 25 GICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQL-SGSLPSVIASLTSLQY 82
G+ L+NL+ + + ++E P+ Q L LK ++ N + S LP+ ++LT+L +
Sbjct: 97 GLTSLENLVAVETKLASLESFPIGQ----LITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 152
Query: 83 LDLSDNYFQGI 93
+DLS NY Q I
Sbjct: 153 VDLSYNYIQTI 163
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 79/188 (42%), Gaps = 16/188 (8%)
Query: 7 LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLP-QCLKNLTRLKVFGISSNQ 65
L+ LDLS+ G + + L+ L L+ + + ++ +L +L IS
Sbjct: 373 LRHLDLSFNG--AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Query: 66 LSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL 125
+ LTSL L ++ N F+ + N +NL F LS ++E +W
Sbjct: 431 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS----KCQLEQISWG 486
Query: 126 PTSQLKVLHLRNCNLNGTLGFLQKQH-----DLKSLDLSHNKLVGSFPAWLLQHNTK-LE 179
L L L N + N L FL H L +LD S N++ S +LQH K L
Sbjct: 487 VFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETS--KGILQHFPKSLA 543
Query: 180 VLRLTNNS 187
LTNNS
Sbjct: 544 FFNLTNNS 551
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 39/237 (16%)
Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN--SFTGSLQLSNSKLDFLHHLDISSN 210
LKSL L+ NK SF L L L L+ N SF+G S+ + L HLD+S
Sbjct: 325 LKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS-- 379
Query: 211 SFTGRLPQNMSTI-LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
F G + + + + L++L +LD F+ S ++E FL L +
Sbjct: 380 -FNGAIIMSANFMGLEELQHLD-----FQHSTLKRVTEFS--AFLSLEK----------- 420
Query: 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
L LD+S+ + F+ LT L L + N+F + ++ +L LD
Sbjct: 421 ------LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 474
Query: 330 ISNNKLVGQIPSWIGNFSS---LALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
+S +L QI SW G F + L LL +S N L L +L LD S N +
Sbjct: 475 LSKCQL-EQI-SW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 118/291 (40%), Gaps = 64/291 (21%)
Query: 52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY--FQGIFYLSSLGNHSNLEFFM 109
+L LK ++ N+ GS+ +L SL YLDLS N F G S LG +S
Sbjct: 326 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS---LRH 380
Query: 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHN--KLVGSF 167
L L N + + N+ +G + QH LD H+ K V F
Sbjct: 381 LDLSFNGAIIMSANF-------------------MGLEELQH----LDFQHSTLKRVTEF 417
Query: 168 PAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
A+L LE L + S+T N+K+DF F G L L
Sbjct: 418 SAFL-----SLEKLLYLDISYT------NTKIDF-------DGIFLG---------LTSL 450
Query: 228 VYLDMSKNKF-EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
L M+ N F + ++S+ + +L FLDLS+ Q ++S + L LL++SHN+
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNL 509
Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS-ARSLQVLDISNNKLV 336
S + L L L N S G L +SL +++NN +
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 25 GICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQL-SGSLPSVIASLTSLQY 82
G+ L+NL+ + + ++E P+ Q L LK ++ N + S LP+ ++LT+L +
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQ----LITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 83 LDLSDNYFQGI 93
+DLS NY Q I
Sbjct: 158 VDLSYNYIQTI 168
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 7 LKALDLSYTG-INGSLENQGICELKNLIELNLEGNAIEGPLP-QCLKNLTRLKVFGISSN 64
L+ LDLS+ G I S G+ EL++L + + + ++ +L +L IS
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHL---DFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Query: 65 QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
+ LTSL L ++ N F+ + N +NL F LS ++E +W
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS----KCQLEQISW 490
Query: 125 LPTSQLKVLHLRNCNLNGTLGFLQKQH-----DLKSLDLSHNKLVGSFPAWLLQHNTK-L 178
L L L N + N L FL H L +LD S N++ S +LQH K L
Sbjct: 491 GVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETS--KGILQHFPKSL 547
Query: 179 EVLRLTNNS 187
LTNNS
Sbjct: 548 AFFNLTNNS 556
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 39/237 (16%)
Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN--SFTGSLQLSNSKLDFLHHLDISSN 210
LKSL L+ NK SF L L L L+ N SF+G S+ + L HLD+S
Sbjct: 330 LKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS-- 384
Query: 211 SFTGRLPQNMSTI-LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
F G + + + + L++L +LD F+ S ++E FL L +
Sbjct: 385 -FNGAIIMSANFMGLEELQHLD-----FQHSTLKRVTEFS--AFLSLEK----------- 425
Query: 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
L LD+S+ + F+ LT L L + N+F + ++ +L LD
Sbjct: 426 ------LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 330 ISNNKLVGQIPSWIGNFSS---LALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
+S +L QI SW G F + L LL +S N L L +L LD S N +
Sbjct: 480 LSKCQL-EQI-SW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 31 NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYF 90
N+ EL+L GN + L T+L++ +SSN L +L + SL++L+ LDL++NY
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92
Query: 91 Q 91
Q
Sbjct: 93 Q 93
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 54/265 (20%)
Query: 51 KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
+N R K+ ++ + L +L S+ S +++ LDLS N
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS------------------- 47
Query: 111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK----LVGS 166
++ + P ++L++L+L + L TL L+ L++LDL++N LVG
Sbjct: 48 -------QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGP 99
Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
L N + + + ++ L+N+K+ L LD S +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS--------------R 145
Query: 227 LVYLDMSKNKFEGSISSSISEMKD-LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN- 284
+ YLD+ N+ + + ++ D L L+L N F ++ ++ L LDLS N
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFA--KLKTLDLSSNK 202
Query: 285 -SFCGQVSPKFMNLTQLGWLSLDNN 308
+F G P+F + + W+SL NN
Sbjct: 203 LAFMG---PEFQSAAGVTWISLRNN 224
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326
PLLT +L L N F N +L LS+ NNN RI + + SLQ
Sbjct: 122 VPLLT------VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 174
Query: 327 VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG-NIPVQLKNLEALEILDVSENNL 383
L +S+N+L S I SL VS NLL IP+ A+E LD S N++
Sbjct: 175 NLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAIPI------AVEELDASHNSI 223
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212
+KSLDLS+N+ + LQ L+ L LT+N + S S L L HLD+S N +
Sbjct: 28 VKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-Y 85
Query: 213 TGRLPQNMSTILQKLVYLDMSKNKF----EGSISSSISEMKDLR------FLDLSRNQFS 262
L + L L +L++ N + E S+ S +++++ LR F + R F+
Sbjct: 86 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 263 G 263
G
Sbjct: 146 G 146
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 31 NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYF 90
N+ EL+L GN + L T+L++ +SSN L +L + SL++L+ LDL++NY
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92
Query: 91 QGIF 94
Q +
Sbjct: 93 QELL 96
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 54/267 (20%)
Query: 51 KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
+N R K+ ++ + L +L S+ S +++ LDLS N
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS------------------- 47
Query: 111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK----LVGS 166
++ + P ++L++L+L + L TL L+ L++LDL++N LVG
Sbjct: 48 -------QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGP 99
Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
L N + + + ++ L+N+K+ L LD S +
Sbjct: 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRS--------------R 145
Query: 227 LVYLDMSKNKFEGSISSSISEMKD-LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN- 284
+ YLD+ N+ + + ++ D L L+L N F ++ ++ L LDLS N
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFA--KLKTLDLSSNK 202
Query: 285 -SFCGQVSPKFMNLTQLGWLSLDNNNF 310
+F G P+F + + W+SL NN
Sbjct: 203 LAFMG---PEFQSAAGVTWISLRNNKL 226
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE 264
LD+S N+ + + T L L L +S N S + + +LR+LDLS N
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT- 102
Query: 265 LSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG----RISNGFLS 320
L L + +L +L L +N F ++ QL L L N S I +G +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG--N 160
Query: 321 SARSLQVLDISNNKL-------VGQIPSWIGN 345
L +LD+S+NKL + ++P+W+ N
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 156 LDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGR 215
LDLSHN L W T L L L++N + + L +LD+SSN
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HT 102
Query: 216 LPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS 262
L + + + LQ L L + N ++ +M L+ L LS+NQ S
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLT 78
SLEN I LK L ELN+ N I+ S LP ++LT
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQ-----------------------SFKLPEYFSNLT 150
Query: 79 SLQYLDLSDNYFQGIF 94
+L++LDLS N Q I+
Sbjct: 151 NLEHLDLSSNKIQSIY 166
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 20 SLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTS 79
S+ + L +L L L N + P ++L RL + +N LS +A L +
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 80 LQYLDLSDN 88
LQYL L+DN
Sbjct: 226 LQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 20 SLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTS 79
S+ + L +L L L N + P ++L RL + +N LS +A L +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 80 LQYLDLSDN 88
LQYL L+DN
Sbjct: 227 LQYLRLNDN 235
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLT 78
SLEN I LK L ELN+ N I+ S LP ++LT
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQ-----------------------SFKLPEYFSNLT 151
Query: 79 SLQYLDLSDNYFQGIF 94
+L++LDLS N Q I+
Sbjct: 152 NLEHLDLSSNKIQSIY 167
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLT 78
SLEN I LK L ELN+ N I+ S LP ++LT
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQ-----------------------SFKLPEYFSNLT 149
Query: 79 SLQYLDLSDNYFQGIF 94
+L++LDLS N Q I+
Sbjct: 150 NLEHLDLSSNKIQSIY 165
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326
PLLT +L L N F N +L LS+ NNN RI + + SLQ
Sbjct: 116 VPLLT------VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 168
Query: 327 VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG-NIPVQLKNLEALEILDVSENNL 383
L +S+N+L S I SL VS NLL IP+ A+E LD S N++
Sbjct: 169 NLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAIPI------AVEELDASHNSI 217
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 22/194 (11%)
Query: 32 LIELNLEGNAIEGPLPQ-CLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYF 90
L L LE N + LP+ N +L +S+N L + TSLQ L LS N
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 91 QGIFYLSSLGN--HSNLEFFMLSLVNNTLEVETENWLPTS----------QLKVLHLRNC 138
+ LS + + H+N+ + +LS + + VE + S +L +L L++
Sbjct: 178 THVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236
Query: 139 NLNGTLGFLQKQHDLKSLDLSHNKL--VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN 196
NL T +L L +DLS+N+L + P +Q +LE L ++NN L L
Sbjct: 237 NLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ---RLERLYISNNRLVA-LNLYG 291
Query: 197 SKLDFLHHLDISSN 210
+ L LD+S N
Sbjct: 292 QPIPTLKVLDLSHN 305
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLT 78
SLEN I LK L ELN+ N I+ S LP ++LT
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQ-----------------------SFKLPEYFSNLT 150
Query: 79 SLQYLDLSDNYFQGIF 94
+L++LDLS N Q I+
Sbjct: 151 NLEHLDLSSNKIQSIY 166
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 23/76 (30%)
Query: 19 GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLT 78
SLEN I LK L ELN+ N I+ S LP ++LT
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQ-----------------------SFKLPEYFSNLT 151
Query: 79 SLQYLDLSDNYFQGIF 94
+L++LDLS N Q I+
Sbjct: 152 NLEHLDLSSNKIQSIY 167
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 47/232 (20%)
Query: 55 RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVN 114
+L+ GI++ L V+AS SLQ LDLS N LGN + +L
Sbjct: 201 KLENCGITAANCK-DLCDVVASKASLQELDLSSN---------KLGNAG-----IAALCP 245
Query: 115 NTLEVETENWLPTSQLKVLHLRNCNLNGT-----LGFLQKQHDLKSLDLSHNKLVGS--- 166
L LP+ +L+ L L C++ L+ + LK L L+ N+L
Sbjct: 246 GLL-------LPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGAR 298
Query: 167 -FPAWLLQHNTKLEVLRLTNNSFTGSLQ------LSNSKLDFLHHLDISSNSFTGRLPQN 219
LL+ +LE L + S T + L+ S+ L L +SSN Q
Sbjct: 299 LLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSR--SLLELQMSSNPLGDEGVQE 356
Query: 220 MS-------TILQKLVYLDMS-KNKFEGSISSSISEMKDLRFLDLSRNQFSG 263
+ T+L++L D N S+++ + + LR LDLS N G
Sbjct: 357 LCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGG 408
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 136/328 (41%), Gaps = 27/328 (8%)
Query: 32 LIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ 91
L EL+L ++G LP +K L LK +S N A+ SL +L + N +
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKK 335
Query: 92 ---GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQ 148
G+ L LGN L+ L +N +E L L L N + N LG LQ
Sbjct: 336 LHLGVGCLEKLGNLQTLD-----LSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-LQ 389
Query: 149 KQH-----DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH 203
Q L+ LDL+ +L + P Q+ L+VL LT S Q + L L
Sbjct: 390 SQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLR 449
Query: 204 HLDISSNSFT-GRLPQ-NMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQF 261
HL++ N F G + + N+ + L L +S + + + +DLS N
Sbjct: 450 HLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Query: 262 SGELSAPL--LTGCFSLWLLDLSHNSFCGQVSPKFMN-LTQLGWLSLDNNNFSGRISN-G 317
+ + L L G + L+L+ NS +SP+ + L+Q ++L +N SN
Sbjct: 510 TCDSIDSLSHLKGIY----LNLAANSI-NIISPRLLPILSQQSTINLSHNPLDCTCSNIH 564
Query: 318 FLS-SARSLQVLDISNNKLVGQIPSWIG 344
FL+ +L L+ S PS G
Sbjct: 565 FLTWYKENLHKLEGSEETTCANPPSLRG 592
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 92/243 (37%), Gaps = 63/243 (25%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
L K NL+ LDLS+ I S C L+ LKNL+ L+
Sbjct: 343 LEKLGNLQTLDLSHNDIEAS----DCCSLQ-------------------LKNLSHLQTLN 379
Query: 61 ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
+S N+ G L+ LDL+ F + + NL F
Sbjct: 380 LSHNEPLGLQSQAFKECPQLELLDLA---FTRLHINAPQSPFQNLHF------------- 423
Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLD-LSHNKLVGSF-------PAWLL 172
L+VL+L C L+ + QH L L L H L G+ LL
Sbjct: 424 ---------LQVLNLTYCFLDTS-----NQHLLAGLPVLRHLNLKGNHFQDGTITKTNLL 469
Query: 173 QHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232
Q LEVL L++ Q + L + H+D+S NS T ++S + K +YL++
Sbjct: 470 QTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL--KGIYLNL 527
Query: 233 SKN 235
+ N
Sbjct: 528 AAN 530
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 29 LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88
L +L L L N + P ++L RL + +N LS V+ L SLQYL L+DN
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 37 LEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY------- 89
L GN I ++ L + + SN L+G + LT L+ LDLSDN
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 90 --FQGIFYLSSL 99
F+G+ +L +L
Sbjct: 98 TTFRGLGHLHTL 109
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
L+ NL L G N + + +L L LN+ N I L NL++L
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLF 293
Query: 61 ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107
+++NQL VI LT+L L LS N+ I L+SL + +F
Sbjct: 294 LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLSKXDSADF 340
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 34/246 (13%)
Query: 24 QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83
QGI L NL LNL GN I P L NL +L I +N+++ S + +LT+L+ L
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115
Query: 84 DLSDNYFQGIFYLSSLGNH------SNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRN 137
L+++ I L++L +N LS ++N + N+L ++ KV
Sbjct: 116 YLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGL---NYLTVTESKV----- 167
Query: 138 CNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
+ + DL SL L++N++ P L T L N T ++N
Sbjct: 168 ----KDVTPIANLTDLYSLSLNYNQIEDISPLASL---TSLHYFTAYVNQITDITPVANX 220
Query: 198 KLDFLHHLDISSNSFTGRLP-QNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL 256
L+ L I +N T P N+S +L +L++ N+ S +++ ++ L+ L++
Sbjct: 221 T--RLNSLKIGNNKITDLSPLANLS----QLTWLEIGTNQI--SDINAVKDLTKLKXLNV 272
Query: 257 SRNQFS 262
NQ S
Sbjct: 273 GSNQIS 278
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 114/316 (36%), Gaps = 60/316 (18%)
Query: 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLP-SVIASLTSLQYLDLS 86
E+ L + NL+G + G K LT L++ + N + P S ++ LDL+
Sbjct: 106 EVLTLTQCNLDGAVLSGNF---FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF 146
N + I L N F +L L + TL+ E WL + G
Sbjct: 163 FNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC--------------GN 207
Query: 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQH--NTKLEVLRLTNNSFTGSLQLSNSKLDFLHH 204
K + +LDLS N S TK++ L L+N+ GS +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS------SFGHTNF 261
Query: 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE 264
D + +F G + T D+SK+K + S S DL L L++N+ +
Sbjct: 262 KDPDNFTFKGLEASGVKTC-------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-- 312
Query: 265 LSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARS 324
+ N+F G LT L L+LD N + +G S
Sbjct: 313 ---------------KIDDNAFWG--------LTHLKELALDTNQLKS-VPDGIFDRLTS 348
Query: 325 LQVLDISNNKLVGQIP 340
LQ + + N P
Sbjct: 349 LQKIWLHTNPWDCSCP 364
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 26/133 (19%)
Query: 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288
Y+D+S N +S S ++DL+FL + + + G SL +L L +N F
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNG--------------------------FLSSA 322
+ F L L L+L N G + +G F +
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 323 RSLQVLDISNNKL 335
R VLD++ NK+
Sbjct: 154 RRFHVLDLTFNKV 166
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 28/148 (18%)
Query: 207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS 266
ISS+ GRLP LV L++ +N+ G ++ ++ L L N+ E+S
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94
Query: 267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF---------------- 310
+ G L L+L N + F +L L L+L +N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK 154
Query: 311 ---SGRISNGFLSSARSLQVLDISNNKL 335
G G S R +Q+ D+ +++
Sbjct: 155 SLNGGAARCGAPSKVRDVQIKDLPHSEF 182
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 172 LQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231
LQH L L L NN + + + S L L L IS N +P N+ + LV L
Sbjct: 77 LQH---LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS---SLVELR 129
Query: 232 MSKNKFEGSISSSISEMKDLRFLDLSRNQ----------FSG------ELSAPLLTGCF- 274
+ N+ S ++++ +++ N F G +S LTG
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK 189
Query: 275 ----SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
+L L L HN + ++L L L +N I NG LS +L+ L +
Sbjct: 190 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHL 248
Query: 331 SNNKLVGQIPSWIGNFSSLALLTVSKN 357
NNKL ++P+ + + L ++ + N
Sbjct: 249 DNNKL-SRVPAGLPDLKLLQVVYLHTN 274
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 34 ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI 93
L L N I P +L L+ +SN+L+ V LT L LDL+DN+ + I
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 94 FYLSSLGNHSNLE-FFMLSLVNNTLEVETENWLPTSQLKVLHLRN 137
G NL+ + L NN + E + +++LRN
Sbjct: 97 ----PRGAFDNLKSLTHIYLYNNPWDCECRD--------IMYLRN 129
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 172
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108
T LQ L LS N+ + L+ L N LE F
Sbjct: 173 TKLQNLYLSKNHISDLRALAGLKNLDVLELF 203
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 29 LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88
L L +L L GN ++ LT+LK +++NQL LT+LQ L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 89 YFQGI 93
Q +
Sbjct: 166 QLQSV 170
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
+ + LDL TG+ +L + L L LNL+ N ++ +LT L G+++NQ
Sbjct: 36 DTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 66 LSGSLP-SVIASLTSLQYLDLSDNYFQ----GIF 94
L+ SLP V LT L L L N + G+F
Sbjct: 95 LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 29 LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88
L L +L L GN ++ LT+LK +++NQL LT+LQ L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 89 YFQGI 93
Q +
Sbjct: 166 QLQSV 170
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
+ + LDL TG+ +L + L L LNL+ N ++ +LT L G+++NQ
Sbjct: 36 DTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 66 LSGSLP-SVIASLTSLQYLDLSDNYFQ----GIF 94
L+ SLP V LT L L L N + G+F
Sbjct: 95 LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 195
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108
T LQ L LS N+ + L+ L N LE F
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 195
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108
T LQ L LS N+ + L+ L N LE F
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 195
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108
T LQ L LS N+ + L+ L N LE F
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLELF 226
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
+ K K+L D S+ G++ N +L+ L+E+ E G P L+ + G
Sbjct: 51 MGKLKDLSRFDASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRGTSTGVWVG 110
Query: 61 ISSNQLSGSL 70
+SS+ S +L
Sbjct: 111 VSSSDASEAL 120
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 130 LKVLHLRNCNLNGTLGFL----QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185
L+VL LRN + G + L+ LDLSHN L + A ++L L L
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL-- 260
Query: 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI-LQKLVYLDMSKNKF 237
SFTG Q+ L LD+S N RL +N S L ++ L + N F
Sbjct: 261 -SFTGLKQVPKGLPAKLSVLDLSYN----RLDRNPSPDELPQVGNLSLKGNPF 308
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 22/100 (22%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 175
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
T LQ L LS N+ + L+ L N LE F +N +
Sbjct: 176 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87
EL NL L L GN ++ LT LK + NQL V LT+L YL L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 88 NYFQ----GIF 94
N Q G+F
Sbjct: 143 NQLQSLPKGVF 153
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 22/100 (22%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 177
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
T LQ L LS N+ + L+ L N LE F +N +
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362
L LD N F+ + LS+ + L ++D+SNN++ N + L L +S N L
Sbjct: 36 LYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 363 IPVQLKNLEALEILDVSENNLS 384
P L++L +L + N++S
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDIS 115
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 22/100 (22%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 140 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 197
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
T LQ L LS N+ + L+ L N LE F +N +
Sbjct: 198 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 237
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 24 QGICELKNLIELNLEGNAIEGPLP-QCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
QGI L NL LNL N I P Q L N+T+L + G N+L+ P +A+L +L +
Sbjct: 60 QGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNG---NKLTDIKP--LANLKNLGW 114
Query: 83 LDLSDN 88
L L +N
Sbjct: 115 LFLDEN 120
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 216 LPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFS 275
+P + +KL +D+S N+ + ++ L L L N+ + EL L G FS
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFS 105
Query: 276 LWLLDLSHNSF-CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNK 334
L LL L+ N C +V F +L L LSL +N I+ G S R++Q + ++ N
Sbjct: 106 LQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNP 163
Query: 335 LVGQIP-SWIGNF 346
+ W+ ++
Sbjct: 164 FICDCHLKWLADY 176
>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 799
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 56/158 (35%), Gaps = 28/158 (17%)
Query: 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISE 247
+TG L S +L H+ I S++ L Y+ K +G ++
Sbjct: 227 YTGDLSTDKS---YLPHVTIKSSA--------------GLPYI----GKTKGDTTAEALV 265
Query: 248 MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307
+ D DL R S + A + W L CG + PK TQ+ W
Sbjct: 266 LADSFIRDLGRAATSADPEAGVKKTITDFWYLS------CGLLFPKGERYTQVDWDKKTR 319
Query: 308 NNFSGRISNGFLSSARSLQVLDISN-NKLVGQIPSWIG 344
N +S L S S V++ S N Q PS G
Sbjct: 320 NIWSAPYPTHLLLSMVSTPVMNESKLNITNTQTPSLYG 357
>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
Length = 853
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 56/158 (35%), Gaps = 28/158 (17%)
Query: 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISE 247
+TG L S +L H+ I S++ L Y+ K +G ++
Sbjct: 227 YTGDLSTDKS---YLPHVTIKSSA--------------GLPYI----GKTKGDTTAEALV 265
Query: 248 MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307
+ D DL R S + A + W L CG + PK TQ+ W
Sbjct: 266 LADSFIRDLGRAATSADPEAGVKKTITDFWYLS------CGLLFPKGERYTQVDWDKKTR 319
Query: 308 NNFSGRISNGFLSSARSLQVLDISN-NKLVGQIPSWIG 344
N +S L S S V++ S N Q PS G
Sbjct: 320 NIWSAPYPTHLLLSMVSTPVMNESKLNITNTQTPSLYG 357
>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 770
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 56/158 (35%), Gaps = 28/158 (17%)
Query: 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISE 247
+TG L S +L H+ I S++ L Y+ K +G ++
Sbjct: 227 YTGDLSTDKS---YLPHVTIKSSA--------------GLPYI----GKTKGDTTAEALV 265
Query: 248 MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307
+ D DL R S + A + W L CG + PK TQ+ W
Sbjct: 266 LADSFIRDLGRAATSADPEAGVKKTITDFWYLS------CGLLFPKGERYTQVDWDKKTR 319
Query: 308 NNFSGRISNGFLSSARSLQVLDISN-NKLVGQIPSWIG 344
N +S L S S V++ S N Q PS G
Sbjct: 320 NIWSAPYPTHLLLSMVSTPVMNESKLNITNTQTPSLYG 357
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
KLE L L+ N +L L L + N T ++ +++ L +++ +++ N
Sbjct: 100 VKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN 155
Query: 236 --KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG-CFSLWLLDLSHNSFCGQVSP 292
K G + + MK L ++ ++ + + G SL L L N +
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITT-----IPQGLPPSLTELHLDGNKITKVDAA 210
Query: 293 KFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALL 352
L L L L N+ S + NG L++ L+ L ++NNKLV ++P + + + ++
Sbjct: 211 SLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 353 TVSKN 357
+ N
Sbjct: 269 YLHNN 273
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
KLE L L+ N +L L L + N T ++ +++ L +++ +++ N
Sbjct: 100 VKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN 155
Query: 236 --KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG-CFSLWLLDLSHNSFCGQVSP 292
K G + + MK L ++ ++ + + G SL L L N +
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITT-----IPQGLPPSLTELHLDGNKITKVDAA 210
Query: 293 KFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALL 352
L L L L N+ S + NG L++ L+ L ++NNKLV ++P + + + ++
Sbjct: 211 SLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 353 TVSKN 357
+ N
Sbjct: 269 YLHNN 273
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 22/100 (22%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LACL 172
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
T LQ L LS N+ + L L N LE F +N +
Sbjct: 173 TKLQNLYLSKNHISDLRALCGLKNLDVLELFSQEALNKPI 212
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 22/100 (22%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 177
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
T LQ L LS N+ + L+ L N LE F +N +
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 22/100 (22%)
Query: 38 EGNAIEG-----PLPQ---------------CLKNLTRLKVFGISSNQLSGSLPSVIASL 77
E N I LPQ L LT+L + NQ+S +P +A L
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 174
Query: 78 TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
T LQ L LS N+ + L+ L N LE F +N +
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 279 LDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG--RISNGFLSSARSLQVLDISNNKL 335
LDLSHNS V+P L+ N +F+G ++ G + L+VLD+S+N+L
Sbjct: 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA---KLRVLDLSSNRL 284
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 216 LPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFS 275
+P + +KL +D+S N+ + ++ L L L N+ + EL L G FS
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFS 105
Query: 276 LWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335
L LL L+ N F +L L LSL +N I+ G S R++Q + ++ N
Sbjct: 106 LQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164
Query: 336 VGQIP-SWIGNF 346
+ W+ ++
Sbjct: 165 ICDCHLKWLADY 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,524,794
Number of Sequences: 62578
Number of extensions: 413558
Number of successful extensions: 1761
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 412
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)