Query 043452
Match_columns 384
No_of_seqs 165 out of 2741
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.6E-39 5.6E-44 323.9 23.7 375 3-384 138-560 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-39 7.2E-44 323.1 23.9 375 2-384 185-584 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.4E-38 5.3E-43 274.9 6.8 344 8-383 81-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.6E-35 1E-39 254.6 4.3 347 1-379 98-447 (873)
5 KOG0444 Cytoskeletal regulator 100.0 2.5E-32 5.3E-37 240.0 -3.4 367 3-382 5-373 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 1.6E-30 3.5E-35 216.9 -5.0 364 3-384 66-541 (565)
7 KOG0444 Cytoskeletal regulator 99.9 1.5E-28 3.3E-33 216.3 -0.8 343 29-383 6-351 (1255)
8 KOG0618 Serine/threonine phosp 99.9 5.6E-27 1.2E-31 214.6 -0.6 358 6-382 46-487 (1081)
9 PLN03210 Resistant to P. syrin 99.9 2.6E-23 5.6E-28 209.3 23.5 342 20-382 548-904 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 9.2E-27 2E-31 194.6 -8.8 348 2-367 134-547 (565)
11 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.5E-26 197.5 24.1 319 45-382 549-880 (1153)
12 KOG0618 Serine/threonine phosp 99.9 4.4E-25 9.5E-30 202.3 -2.7 359 7-384 23-465 (1081)
13 KOG4237 Extracellular matrix p 99.9 3.6E-23 7.7E-28 172.8 -1.3 362 8-381 70-498 (498)
14 cd00116 LRR_RI Leucine-rich re 99.8 1.1E-20 2.5E-25 166.3 7.7 260 124-383 19-319 (319)
15 PRK15387 E3 ubiquitin-protein 99.8 6.8E-19 1.5E-23 165.9 16.4 264 31-367 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 8E-19 1.7E-23 165.4 16.4 258 54-384 201-458 (788)
17 KOG4237 Extracellular matrix p 99.8 2.2E-21 4.7E-26 162.3 -2.7 294 36-360 52-359 (498)
18 cd00116 LRR_RI Leucine-rich re 99.8 1.8E-19 3.9E-24 158.7 7.7 86 273-358 220-318 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 8.7E-17 1.9E-21 152.6 12.8 226 128-384 199-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 1.1E-15 2.3E-20 145.3 14.6 204 129-360 221-428 (754)
21 KOG1909 Ran GTPase-activating 99.5 6.9E-15 1.5E-19 121.9 4.9 237 124-360 26-311 (382)
22 KOG0617 Ras suppressor protein 99.5 3.3E-15 7.2E-20 111.5 -1.2 158 26-189 29-186 (264)
23 KOG0617 Ras suppressor protein 99.4 4.3E-15 9.3E-20 110.9 -2.6 161 4-171 32-192 (264)
24 KOG1909 Ran GTPase-activating 99.4 1.3E-13 2.7E-18 114.5 3.3 241 143-383 22-310 (382)
25 KOG3207 Beta-tubulin folding c 99.4 5.9E-14 1.3E-18 119.7 1.1 216 145-361 115-340 (505)
26 KOG3207 Beta-tubulin folding c 99.3 8.4E-13 1.8E-17 112.8 2.8 212 125-336 118-339 (505)
27 KOG4341 F-box protein containi 99.3 2.6E-13 5.7E-18 115.2 -2.4 254 129-382 139-437 (483)
28 KOG2120 SCF ubiquitin ligase, 99.3 1.3E-12 2.8E-17 106.3 1.3 84 178-262 187-273 (419)
29 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.3E-16 95.6 6.2 123 250-377 20-146 (175)
30 KOG4341 F-box protein containi 99.2 4.1E-13 8.9E-18 114.1 -3.5 160 217-376 286-457 (483)
31 KOG2120 SCF ubiquitin ligase, 99.2 1.5E-12 3.3E-17 106.0 -1.8 199 151-351 185-391 (419)
32 PF14580 LRR_9: Leucine-rich r 99.2 3.9E-11 8.6E-16 93.4 5.8 109 270-384 15-126 (175)
33 KOG1259 Nischarin, modulator o 99.1 2.8E-11 6E-16 98.9 2.9 131 246-384 281-412 (490)
34 PF13855 LRR_8: Leucine rich r 99.1 9.4E-11 2E-15 75.1 3.9 61 323-383 1-61 (61)
35 KOG4658 Apoptotic ATPase [Sign 99.1 5.9E-11 1.3E-15 115.1 4.1 83 4-88 544-628 (889)
36 KOG1259 Nischarin, modulator o 99.0 4.3E-10 9.3E-15 92.1 3.6 126 178-311 286-412 (490)
37 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.5E-14 70.0 3.7 61 298-359 1-61 (61)
38 COG4886 Leucine-rich repeat (L 98.9 2.6E-09 5.7E-14 96.8 6.0 201 154-367 96-297 (394)
39 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.7E-14 105.2 4.9 199 5-213 523-730 (889)
40 PLN03150 hypothetical protein; 98.8 1E-08 2.2E-13 97.6 8.7 107 275-382 419-526 (623)
41 COG5238 RNA1 Ran GTPase-activa 98.8 2.9E-09 6.3E-14 86.0 3.2 234 127-360 29-316 (388)
42 COG4886 Leucine-rich repeat (L 98.8 1.4E-08 3E-13 92.1 7.0 174 128-311 116-290 (394)
43 KOG0532 Leucine-rich repeat (L 98.7 6.9E-10 1.5E-14 98.4 -2.3 196 149-358 73-271 (722)
44 PLN03150 hypothetical protein; 98.7 2.2E-08 4.7E-13 95.3 6.8 89 6-95 419-507 (623)
45 KOG0532 Leucine-rich repeat (L 98.7 1.6E-09 3.4E-14 96.3 -1.3 191 178-381 77-270 (722)
46 COG5238 RNA1 Ran GTPase-activa 98.7 5.1E-09 1.1E-13 84.7 0.8 215 26-262 26-285 (388)
47 KOG2982 Uncharacterized conser 98.7 1.8E-08 4E-13 82.6 3.6 191 147-337 67-263 (418)
48 KOG2982 Uncharacterized conser 98.6 1.6E-08 3.5E-13 82.9 2.5 166 123-288 92-263 (418)
49 KOG1859 Leucine-rich repeat pr 98.6 3.2E-09 7E-14 97.0 -3.7 126 250-383 165-291 (1096)
50 KOG3665 ZYG-1-like serine/thre 98.5 4.2E-08 9.1E-13 93.2 3.1 153 30-185 122-284 (699)
51 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.8E-13 92.6 -1.5 197 149-360 70-268 (414)
52 KOG1947 Leucine rich repeat pr 98.5 2E-08 4.2E-13 93.9 -0.9 134 148-281 185-328 (482)
53 KOG0531 Protein phosphatase 1, 98.4 1.5E-08 3.3E-13 92.1 -2.4 109 124-238 91-199 (414)
54 KOG3665 ZYG-1-like serine/thre 98.4 4.8E-08 1E-12 92.8 0.4 154 5-160 122-284 (699)
55 PF13306 LRR_5: Leucine rich r 98.4 1.2E-06 2.6E-11 65.8 6.4 124 243-374 6-129 (129)
56 PF12799 LRR_4: Leucine Rich r 98.3 8.1E-07 1.8E-11 51.9 3.5 37 324-361 2-38 (44)
57 KOG1859 Leucine-rich repeat pr 98.3 1.7E-08 3.6E-13 92.5 -5.9 129 152-288 165-293 (1096)
58 KOG1947 Leucine rich repeat pr 98.3 3.5E-07 7.5E-12 85.5 1.8 34 349-382 403-438 (482)
59 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.3E-12 69.0 -1.4 109 250-362 28-138 (177)
60 KOG1644 U2-associated snRNP A' 98.1 6.6E-06 1.4E-10 64.1 5.8 102 275-379 43-148 (233)
61 PF13306 LRR_5: Leucine rich r 98.1 8.3E-06 1.8E-10 61.2 6.0 120 223-350 10-129 (129)
62 PF12799 LRR_4: Leucine Rich r 98.1 4.7E-06 1E-10 48.7 3.6 37 347-384 1-37 (44)
63 KOG1644 U2-associated snRNP A' 97.9 3.2E-05 6.9E-10 60.4 6.4 107 175-284 41-150 (233)
64 KOG4579 Leucine-rich repeat (L 97.8 2.1E-06 4.5E-11 62.5 -1.4 136 226-366 28-165 (177)
65 KOG2123 Uncharacterized conser 97.8 9.4E-07 2E-11 72.1 -3.6 82 29-114 18-99 (388)
66 KOG2739 Leucine-rich acidic nu 97.6 1.2E-05 2.6E-10 65.3 -0.4 103 7-112 20-125 (260)
67 PRK15386 type III secretion pr 97.5 0.0005 1.1E-08 60.9 8.5 54 28-88 50-104 (426)
68 KOG2123 Uncharacterized conser 97.5 1.2E-05 2.6E-10 65.8 -2.0 79 250-333 20-98 (388)
69 PRK15386 type III secretion pr 97.4 0.00064 1.4E-08 60.3 8.0 74 223-309 50-123 (426)
70 KOG2739 Leucine-rich acidic nu 97.1 0.00036 7.9E-09 56.9 2.6 105 270-377 39-149 (260)
71 KOG3864 Uncharacterized conser 97.0 0.00015 3.2E-09 56.7 -0.2 86 275-360 102-189 (221)
72 KOG3864 Uncharacterized conser 96.4 0.00062 1.3E-08 53.4 -0.7 82 298-380 101-185 (221)
73 KOG4308 LRR-containing protein 96.3 5.8E-05 1.3E-09 69.1 -7.7 37 325-361 264-304 (478)
74 PF00560 LRR_1: Leucine Rich R 95.9 0.0052 1.1E-07 29.7 1.4 21 348-369 1-21 (22)
75 KOG4308 LRR-containing protein 95.7 0.00017 3.8E-09 66.0 -7.8 183 105-288 89-304 (478)
76 PF00560 LRR_1: Leucine Rich R 94.7 0.019 4E-07 27.7 1.2 21 324-345 1-21 (22)
77 PF13504 LRR_7: Leucine rich r 94.6 0.023 5E-07 25.4 1.3 12 372-383 2-13 (17)
78 PF13516 LRR_6: Leucine Rich r 93.9 0.025 5.5E-07 27.9 0.8 13 348-360 3-15 (24)
79 PF13516 LRR_6: Leucine Rich r 93.8 0.015 3.3E-07 28.7 -0.2 23 322-344 1-23 (24)
80 smart00369 LRR_TYP Leucine-ric 90.0 0.28 6.2E-06 24.5 1.9 21 5-26 2-22 (26)
81 smart00370 LRR Leucine-rich re 90.0 0.28 6.2E-06 24.5 1.9 21 5-26 2-22 (26)
82 KOG0473 Leucine-rich repeat pr 86.7 0.029 6.3E-07 45.3 -4.6 59 323-383 65-123 (326)
83 smart00367 LRR_CC Leucine-rich 86.1 0.41 8.9E-06 24.0 1.0 10 348-357 3-12 (26)
84 smart00368 LRR_RI Leucine rich 83.0 0.9 2E-05 23.3 1.4 23 200-222 2-24 (28)
85 KOG0473 Leucine-rich repeat pr 77.8 0.1 2.2E-06 42.3 -4.7 61 26-88 38-98 (326)
86 smart00365 LRR_SD22 Leucine-ri 77.0 2.4 5.2E-05 21.3 1.8 12 348-359 3-14 (26)
87 smart00364 LRR_BAC Leucine-ric 65.8 4.3 9.3E-05 20.4 1.2 14 347-360 2-15 (26)
88 KOG3763 mRNA export factor TAP 65.7 7.6 0.00016 36.2 3.6 85 148-232 215-308 (585)
89 KOG4242 Predicted myosin-I-bin 62.7 41 0.00088 31.0 7.4 109 274-382 354-479 (553)
90 KOG3763 mRNA export factor TAP 55.7 8.5 0.00019 35.9 2.2 82 296-377 216-307 (585)
91 PF07723 LRR_2: Leucine Rich R 25.4 53 0.0011 16.4 1.3 11 153-163 2-12 (26)
92 KOG1665 AFH1-interacting prote 25.1 92 0.002 25.5 3.2 12 299-310 197-208 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-39 Score=323.86 Aligned_cols=375 Identities=33% Similarity=0.507 Sum_probs=221.1
Q ss_pred CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 82 (384)
.+++|++|++++|.+++.+ +..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+....|..+.++++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccC-ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 4677888888888776544 566777888888888888777677777777888888888877777677777777777777
Q ss_pred EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCC
Q 043452 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHN 161 (384)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 161 (384)
|++++|.+.+..+ ..+.++++|++|+++.+.... ..+..+..+++|++|+++++.+.+ ++..+..+++|+.|++++|
T Consensus 217 L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 217 IYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EECcCCccCCcCC-hhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 7777777665433 345667777777776554321 223345555566666666555543 4444555555555555555
Q ss_pred ccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc--------
Q 043452 162 KLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS-------- 233 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-------- 233 (384)
.+.+.+|..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.. +++|+.|+++
T Consensus 295 ~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 295 SLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred eeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeC
Confidence 5544444333 24455555555555444444444444444444444444444333332222 3333333333
Q ss_pred ----------------CCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccccc
Q 043452 234 ----------------KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297 (384)
Q Consensus 234 ----------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (384)
+|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccC
Confidence 3333333344444455555555555555433222 23334444444444444443333333333
Q ss_pred -----------------------CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452 298 -----------------------TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV 354 (384)
Q Consensus 298 -----------------------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 354 (384)
++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+..|+.+..+++|+.|++
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh-hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 4455555555555533332 3445567777777777777777777777788888888
Q ss_pred cCcccccccccccccCCCCceEeCcCCCCC
Q 043452 355 SKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|++++..|..+..+++|+.|++++|+++
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCccc
Confidence 888877777777777888888888887764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-39 Score=323.08 Aligned_cols=375 Identities=33% Similarity=0.474 Sum_probs=271.4
Q ss_pred CCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452 2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 81 (384)
.++++|++|++++|.+++.+ +..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 46778888888888887555 56778888888888888888777888888888888888888888777788888888888
Q ss_pred EEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccC
Q 043452 82 YLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSH 160 (384)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~ 160 (384)
+|++++|.+.+..+ ..+..+++|++|+++.+.... ..+..+..+++|+.|++++|.+.+ .+..+..+++|+.|++++
T Consensus 264 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 264 YLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred EEECcCCeeeccCc-hhHhhccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 88888887765543 345667777777776554322 233344566677777777666655 555566666777777776
Q ss_pred CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccC------------------------ccccCCceEeeecCccCCCc
Q 043452 161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN------------------------SKLDFLHHLDISSNSFTGRL 216 (384)
Q Consensus 161 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~~~~~ 216 (384)
|.+.+.+|..+ ..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.+..
T Consensus 342 n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 342 NKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 66665555444 355666666666665554444333 44455555555555554333
Q ss_pred chhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccc
Q 043452 217 PQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN 296 (384)
Q Consensus 217 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (384)
+..+. .++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..+..+..
T Consensus 421 p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 421 PSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred ChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhh
Confidence 33332 25555555665555555545445556666666666666653333221 3578889999999998888888889
Q ss_pred cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452 297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376 (384)
Q Consensus 297 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 376 (384)
+++|+.|++++|.+.+.++.. +..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..|..+..+++|+.+
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhccCEEECcCCcceeeCChH-HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 999999999999998666654 5667999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCC
Q 043452 377 DVSENNLS 384 (384)
Q Consensus 377 ~l~~~~~s 384 (384)
++++|+++
T Consensus 577 ~ls~N~l~ 584 (968)
T PLN00113 577 NISHNHLH 584 (968)
T ss_pred eccCCcce
Confidence 99999874
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-38 Score=274.92 Aligned_cols=344 Identities=26% Similarity=0.332 Sum_probs=192.4
Q ss_pred cEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCC
Q 043452 8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 87 (384)
++|++++|.+. .+....|.++++|+.+++.+|.++ .+|+......+|+.|++.+|.++.+..+.++.++.|+.|+++.
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 34666666555 454555566666666666666665 4555555555566666666666655555566666666666666
Q ss_pred CccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCC
Q 043452 88 NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGS 166 (384)
Q Consensus 88 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 166 (384)
|.++.. +...+..- .++++|++++|.++. -...|..+.+|..|.|+.|.++ .
T Consensus 159 N~is~i-~~~sfp~~-------------------------~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-t 211 (873)
T KOG4194|consen 159 NLISEI-PKPSFPAK-------------------------VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-T 211 (873)
T ss_pred chhhcc-cCCCCCCC-------------------------CCceEEeeccccccccccccccccchheeeecccCccc-c
Confidence 554422 22333333 455666666665555 2334555555666666666555 5
Q ss_pred cHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc
Q 043452 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS 246 (384)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 246 (384)
+|...|+.+++|+.|++.+|.+...-...|..+++|+.+.+.+|++. ......+.++.++++|++..|++......++.
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccccc
Confidence 55555555666666666666555444555555666666666666555 44444444455666666666655555555555
Q ss_pred CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccce
Q 043452 247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326 (384)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 326 (384)
.+..|+.|+++.|.|. .+....+..+++|++|+++.|.++...+.+|..+..|++|+++.|.++ .+....|..+.+|+
T Consensus 291 gLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLH 368 (873)
T ss_pred ccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhh
Confidence 5566666666666554 333334444556666666666665555555555555666666666555 44445555555666
Q ss_pred EEEcCCCccc---cccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 327 VLDISNNKLV---GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 327 ~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
+|+++.|.+. +....+|.++++|+.|.+.||++..+.-++|..+++|+.||+.+|.|
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 6666665543 23444555566666666666665554545555666666666665554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-35 Score=254.63 Aligned_cols=347 Identities=23% Similarity=0.250 Sum_probs=291.1
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 80 (384)
|..+++|+.+++..|.++ .+ |...+...+|+.|++.+|.+..+-...+..++.|+.||++.|.+..+-...+..-.++
T Consensus 98 f~nl~nLq~v~l~~N~Lt-~I-P~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELT-RI-PRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HhcCCcceeeeeccchhh-hc-ccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 457899999999999987 77 5666677789999999999987777889999999999999999986666677777899
Q ss_pred cEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEecc
Q 043452 81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLS 159 (384)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~ 159 (384)
++|+++.|+++.. ..+.|..+.+|..|.++.|.++.++ ..|..+++|+.|+|.
T Consensus 176 ~~L~La~N~It~l--------------------------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 176 KKLNLASNRITTL--------------------------ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred eEEeecccccccc--------------------------ccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 9999999998865 2345666678888889999988855 456679999999999
Q ss_pred CCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCC
Q 043452 160 HNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239 (384)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 239 (384)
.|.+. ......|.++++|+.|.+-+|.+......+|..+.++++|+++.|++. .+......+++.|+.|++++|.|..
T Consensus 230 rN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 230 RNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred cccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhhe
Confidence 98874 333445778999999999999998888888889999999999999988 5555444558999999999999988
Q ss_pred ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccc--hh
Q 043452 240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS--NG 317 (384)
Q Consensus 240 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~ 317 (384)
.-.+.++.+++|+.|+++.|.++ ......|..++.|++|++++|.++.....+|..+.+|++|++++|.+...+. ..
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred eecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 88888899999999999999998 6667777888999999999999887767778888999999999998764333 34
Q ss_pred hhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCc
Q 043452 318 FLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVS 379 (384)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 379 (384)
.+.+++.|++|++.+|++..+...||.++.+|+.|+|.+|.+-.+-+.+|.++ .|++|.+.
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 56778999999999999987777899999999999999999888888999888 88887654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.5e-32 Score=240.03 Aligned_cols=367 Identities=23% Similarity=0.292 Sum_probs=291.4
Q ss_pred CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 82 (384)
-+|-.|-+++++|.++|+-.|.....+.++++|.+..+++. .+|..++.+.+|+.|.+.++.+. .+...++.+|.||.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 35778889999999998777888899999999999999998 78999999999999999999988 66778889999999
Q ss_pred EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccc-cccccCCCCeEeccCC
Q 043452 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHN 161 (384)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 161 (384)
+.+.+|++........+.++..|..|+++.+... ..+..+..-.++-.|+++.+.+..+|. .+-++..|-.|++++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999998866655567778888888888755432 233445555677788888888877664 4557777888888888
Q ss_pred ccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC-CCcchhHHHhccCCcEEEccCCcCCCc
Q 043452 162 KLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT-GRLPQNMSTILQKLVYLDMSKNKFEGS 240 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~ 240 (384)
.+. .+|+.+ ..+.+|++|.+++|.+.......+..+++|+.|.+++.+-+ ..+|.++- .+.+|+.++++.|.+. .
T Consensus 161 rLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 161 RLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred hhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccccccCCC-c
Confidence 775 555554 46778888888887766444444455667777888877643 24455443 4789999999998887 6
Q ss_pred cchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhh
Q 043452 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLS 320 (384)
Q Consensus 241 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 320 (384)
.|..+..+++|+.|++++|+++. ... -.....+|+.|+++.|+++ ..|.++++++.|+.|++.+|+++-...+.-..
T Consensus 237 vPecly~l~~LrrLNLS~N~ite-L~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITE-LNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred chHHHhhhhhhheeccCcCceee-eec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 78888899999999999999873 211 1123568999999999998 67888999999999999999876444444455
Q ss_pred ccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452 321 SARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 321 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
.+.+|+.+..++|.+. .+|+.++.|..|+.|.|+.|++. ..|++|.-++.|+.||+++|+
T Consensus 314 KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 6688999999998887 89999999999999999999998 689999999999999999986
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.6e-30 Score=216.86 Aligned_cols=364 Identities=26% Similarity=0.337 Sum_probs=232.6
Q ss_pred CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 82 (384)
.+..|.+|.+.++..+ +. +.+++++..++.++.+++++. .+|+.++.+++|+.++++++.+. ..++.++++-.+..
T Consensus 66 nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED 141 (565)
T ss_pred cccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence 3455666777776665 44 455666667777777777666 56666666777777777766666 55566666666666
Q ss_pred EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCc
Q 043452 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK 162 (384)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 162 (384)
++..+|.+++.. ..+..+.++..+.+.++... .......+++.|++++...+-+..+|..++.+.+|.-|++..|+
T Consensus 142 l~~~~N~i~slp--~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 142 LDATNNQISSLP--EDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhccccccccCc--hHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence 666666665442 34555556665555543322 12222333667777777777776677777777777777777777
Q ss_pred cCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccc
Q 043452 163 LVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242 (384)
Q Consensus 163 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 242 (384)
+. .+|. |.+|..|++++++.|++.....+...+++++..||+..|++. ++|..++. +.+|.+|++++|.++ ..+
T Consensus 218 i~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp 291 (565)
T KOG0472|consen 218 IR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLP 291 (565)
T ss_pred cc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCC
Confidence 65 5552 456777777777777776555666667777777777777776 67766665 667777777777776 445
Q ss_pred hhccCCCCCcEEEeecccccc-----------------------------------------------------------
Q 043452 243 SSISEMKDLRFLDLSRNQFSG----------------------------------------------------------- 263 (384)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~~~----------------------------------------------------------- 263 (384)
..++++ +|+.|.+.||++..
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 566666 66777666665530
Q ss_pred -----ccccchhccCC--cceEEEccCCcccc-----------------------cccccccccCCcCeEeCCCCcCCcc
Q 043452 264 -----ELSAPLLTGCF--SLWLLDLSHNSFCG-----------------------QVSPKFMNLTQLGWLSLDNNNFSGR 313 (384)
Q Consensus 264 -----~~~~~~~~~~~--~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~L~~l~l~~~~~~~~ 313 (384)
..+.+.|.... -...++++.|++.. ..+..++.+++|.-|++++|.+. .
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~ 449 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-D 449 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-h
Confidence 11111111111 13334444443321 12233445667777777777665 5
Q ss_pred cchhhhhccccceEEEcCCCccc-----------------------cccchhhhccCCccEEEccCcccccccccccccC
Q 043452 314 ISNGFLSSARSLQVLDISNNKLV-----------------------GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL 370 (384)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 370 (384)
++..++.- ..|+.++++.|.+. ..-+..+.++++|..||+.+|.+. .+|..+++|
T Consensus 450 LP~e~~~l-v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 450 LPEEMGSL-VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred cchhhhhh-hhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 55544433 45777777766553 233344889999999999999998 788899999
Q ss_pred CCCceEeCcCCCCC
Q 043452 371 EALEILDVSENNLS 384 (384)
Q Consensus 371 ~~L~~l~l~~~~~s 384 (384)
.+|+.|+++||+|.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 99999999999985
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.5e-28 Score=216.33 Aligned_cols=343 Identities=23% Similarity=0.314 Sum_probs=253.7
Q ss_pred cccccEEecCCCccc-cCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452 29 LKNLIELNLEGNAIE-GPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107 (384)
Q Consensus 29 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 107 (384)
+|-.+-+++++|.+. +.+|..+.++.+++-|.+..+.+. .+|+.++++++|.+|.+++|++.+.. ..+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHH
Confidence 466788899999998 589999999999999999998888 88999999999999999999987664 56788888888
Q ss_pred hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC
Q 043452 108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS 187 (384)
Q Consensus 108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 187 (384)
+.+..+.......+..+..+..|..|+++.+.+..+|..+...+++-+|++++|++. .+|...+-.++-|-.|+++.|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 888877777777777777888888888888888888888888888888888888875 7777777777777788888777
Q ss_pred CcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCC-CccchhccCCCCCcEEEeeccccccccc
Q 043452 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELS 266 (384)
Q Consensus 188 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 266 (384)
+. ..+..+.++..|+.|++++|.+...-...+. ..++|+.|.+++..-+ ...|..+..+.+|..++++.|.+. ..+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 76 4444566777788888888776532222221 2445666677665432 345666677777888888887774 333
Q ss_pred cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc-cccchhhhc
Q 043452 267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV-GQIPSWIGN 345 (384)
Q Consensus 267 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~ 345 (384)
+...++++|+.|++++|.++.. ........+|++|+++.|+++ ..++. ...++.|+.|...+|.++ +.+|..++.
T Consensus 239 -ecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 239 -ECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred -HHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCcccccCCccchhh
Confidence 3334577788888888777642 233344567777888888776 44444 344577777777777554 246677777
Q ss_pred cCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
+..|+.+...+|.+. ..|+.+..|++|++|.++.|.+
T Consensus 315 L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 777777777777776 6777788888888888877753
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=5.6e-27 Score=214.61 Aligned_cols=358 Identities=28% Similarity=0.361 Sum_probs=196.5
Q ss_pred cccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEEC
Q 043452 6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 85 (384)
+|+.|+++++.+. .. +..+...++|+.|+++.|.+. ..|.+...+.+|+++++..+.+. ..|..+..+++|+.|++
T Consensus 46 ~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 4778888887775 44 455666666666666666555 45556666666666666665555 56666666666666666
Q ss_pred CCCccccccccccCCCCCchh-------------------hh----------------------hhhcccCceeeccCCC
Q 043452 86 SDNYFQGIFYLSSLGNHSNLE-------------------FF----------------------MLSLVNNTLEVETENW 124 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~L~-------------------~l----------------------~l~~~~~~~~~~~~~~ 124 (384)
+.|.+.... ..+..++.+. .+ ++.++... ...+
T Consensus 122 S~N~f~~~P--l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~----~~dl 195 (1081)
T KOG0618|consen 122 SFNHFGPIP--LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME----VLDL 195 (1081)
T ss_pred chhccCCCc--hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh----hhhh
Confidence 665543221 0111111111 11 11111110 0011
Q ss_pred CCCC--------------------CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcC
Q 043452 125 LPTS--------------------QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184 (384)
Q Consensus 125 ~~~~--------------------~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 184 (384)
..++ +++.|+...|.+... ....-..+|+.++++.+.++ .+|.++ ..+.+|+.+...
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~-~~~p~p~nl~~~dis~n~l~-~lp~wi-~~~~nle~l~~n 272 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL-DVHPVPLNLQYLDISHNNLS-NLPEWI-GACANLEALNAN 272 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceee-ccccccccceeeecchhhhh-cchHHH-HhcccceEeccc
Confidence 1111 222222222222110 00011134555555555554 445333 355556655555
Q ss_pred CCCCcC----------------------cccccCccccCCceEeeecCccCCCcchhHHHhcc-CCcEEEccCCcCCCcc
Q 043452 185 NNSFTG----------------------SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ-KLVYLDMSKNKFEGSI 241 (384)
Q Consensus 185 ~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~ 241 (384)
.|.+.. -.+......++|++|++..|.+. ..|..++.... .++.|+.+.+++....
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc
Confidence 554431 22333345666777777777766 45544433222 2555555555554333
Q ss_pred chhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhc
Q 043452 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS 321 (384)
Q Consensus 242 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 321 (384)
...-..++.|+.|++.+|.++ +.....+.+.++|+.|++++|.+.......+.++..|+.|+++||.++ .++.. ...
T Consensus 352 ~~~e~~~~~Lq~LylanN~Lt-d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t-va~ 428 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLT-DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT-VAN 428 (1081)
T ss_pred cccchhhHHHHHHHHhcCccc-ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH-HHh
Confidence 333334566777777777776 444455566777888888888777666666777777778888887776 45533 445
Q ss_pred cccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452 322 ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
++.|++|....|++. ..| .+.+++.|+.+|++.|.++.........-|+|++||++||.
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 577777777777776 556 56777777777777777765433333333677777777775
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.6e-23 Score=209.32 Aligned_cols=342 Identities=20% Similarity=0.241 Sum_probs=201.0
Q ss_pred ccchhhhhccccccEEecCCCcc------ccCCchhhhcCC-CCCEEEeecCcccCccCccccCCCCccEEECCCCcccc
Q 043452 20 SLENQGICELKNLIELNLEGNAI------EGPLPQCLKNLT-RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG 92 (384)
Q Consensus 20 ~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 92 (384)
.+...+|..+++|+.|.+..+.. ...+|..+..+| +|+.|.+.++.+. ..|..+ ...+|++|++.++.+..
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc
Confidence 34455566777777776654421 112444454443 4677777666555 455554 45667777777666554
Q ss_pred ccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCC-CccccccccCCCCeEeccCCccCCCcHHHH
Q 043452 93 IFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLN-GTLGFLQKQHDLKSLDLSHNKLVGSFPAWL 171 (384)
Q Consensus 93 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 171 (384)
.+ ..+..+++|+.++++.+...... ..+..+++|+.|++++|... .++..+..+++|+.|++++|.....+|..+
T Consensus 626 L~--~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 626 LW--DGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cc--cccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 32 34456666666666654332221 13555677777777776433 366667777777777777765444555433
Q ss_pred hhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCC-------ccchh
Q 043452 172 LQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG-------SISSS 244 (384)
Q Consensus 172 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~ 244 (384)
.+++|+.|.+++|......+. ..++|+.|+++++.+. .+|..+ .+++|++|.+.++.... ..+..
T Consensus 702 --~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 702 --NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred --CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhh
Confidence 567777777777654333221 2356777777777665 444433 25666666666543211 11111
Q ss_pred ccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcccc
Q 043452 245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARS 324 (384)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 324 (384)
....++|+.|++++|......+.. +.++++|+.|++++|......|... .+++|+.|++++|.....++. ..++
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~n 847 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----ISTN 847 (1153)
T ss_pred hhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----cccc
Confidence 223467777777777654344433 4567777777777765444444443 567777777777654322221 1256
Q ss_pred ceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452 325 LQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 325 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
|+.|++++|.+. .+|..+..+++|+.|++++|......|..+..+++|+.+++++|+
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 777777777776 567777777777777777775444566666677777777777774
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=9.2e-27 Score=194.59 Aligned_cols=348 Identities=28% Similarity=0.368 Sum_probs=240.2
Q ss_pred CCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452 2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 81 (384)
+++-.|..++..+|.++ +. +..+..+.+|..+++.++++.. .|+..-+++.|+.+|..++.++ ..|..++.+..|.
T Consensus 134 ~~~~~l~dl~~~~N~i~-sl-p~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQIS-SL-PEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLE 209 (565)
T ss_pred HHHhhhhhhhccccccc-cC-chHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhH
Confidence 34556667777777776 55 4567777888888888888873 4444444788888888877776 7777888888888
Q ss_pred EEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCC
Q 043452 82 YLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHN 161 (384)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 161 (384)
.|++.+|++... ..|..|+.|.++.+..+.... ...+....++++..|++..+++..+|..+..+.+|..|++++|
T Consensus 210 ~LyL~~Nki~~l---Pef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 210 LLYLRRNKIRFL---PEFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHhhhcccccC---CCCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC
Confidence 888888877654 467778888877776544322 1222334667777777777777777777777777777777777
Q ss_pred ccCCCcHHHHhhhCCCccEEEcCCCCCcC------------------------------------c-----ccccCcccc
Q 043452 162 KLVGSFPAWLLQHNTKLEVLRLTNNSFTG------------------------------------S-----LQLSNSKLD 200 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------------------------~-----~~~~~~~~~ 200 (384)
.++ .+|... +.+ +|+.|-+.+|.+.. . ........-
T Consensus 286 ~is-~Lp~sL-gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i 362 (565)
T KOG0472|consen 286 DIS-SLPYSL-GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII 362 (565)
T ss_pred ccc-cCCccc-ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence 776 444444 344 66666666663210 0 000111234
Q ss_pred CCceEeeecCccCCCcchhHHHhcc--CCcEEEccCCcCC-----------------------CccchhccCCCCCcEEE
Q 043452 201 FLHHLDISSNSFTGRLPQNMSTILQ--KLVYLDMSKNKFE-----------------------GSISSSISEMKDLRFLD 255 (384)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~ 255 (384)
+.+.|++++-+++ .+|.+++.... -....++++|++. ++.+..+..+++|..|+
T Consensus 363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence 5677777777777 67776665332 2566777777553 24455566678888888
Q ss_pred eeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335 (384)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (384)
+++|.+. ..+.+++. ...|+.|+++.|++. ..|........++++-.+++++. .+++.-...+.+|..|++.+|.+
T Consensus 442 L~NN~Ln-~LP~e~~~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 442 LSNNLLN-DLPEEMGS-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred cccchhh-hcchhhhh-hhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCch
Confidence 8888776 55666544 666888888888775 45665556666777777778877 66666577789999999999999
Q ss_pred ccccchhhhccCCccEEEccCccccccccccc
Q 043452 336 VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL 367 (384)
Q Consensus 336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 367 (384)
. .+|..+++|.+|+.|+++||++. ..+..+
T Consensus 518 q-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~i 547 (565)
T KOG0472|consen 518 Q-QIPPILGNMTNLRHLELDGNPFR-QPRHQI 547 (565)
T ss_pred h-hCChhhccccceeEEEecCCccC-CCHHHH
Confidence 8 88999999999999999999998 444444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.1e-21 Score=197.52 Aligned_cols=319 Identities=20% Similarity=0.208 Sum_probs=238.4
Q ss_pred CCchhhhcCCCCCEEEeecCcc------cCccCccccCCC-CccEEECCCCccccccccccCCCCCchhhhhhhcccCce
Q 043452 45 PLPQCLKNLTRLKVFGISSNQL------SGSLPSVIASLT-SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117 (384)
Q Consensus 45 ~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 117 (384)
....+|.++++|+.|.+..+.. ....|..+..+| +|+.|++.++.+..... .....+|+.|.+..+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~---~f~~~~L~~L~L~~s~l-- 623 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS---NFRPENLVKLQMQGSKL-- 623 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC---cCCccCCcEEECcCccc--
Confidence 4456789999999999976532 224566676664 69999999987765532 12467889888886543
Q ss_pred eeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCc
Q 043452 118 EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197 (384)
Q Consensus 118 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 197 (384)
...+..+..+++|+.++++++......+.+..+++|+.|++++|.....+|..+ ..+++|+.|++++|......+..+
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-
Confidence 234455678899999999987654433357889999999999997666777765 588999999999986554555443
Q ss_pred cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccc------ccccchhc
Q 043452 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG------ELSAPLLT 271 (384)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~ 271 (384)
.+++|+.|++++|.....++. ..++|++|+++++.+.. .+..+ .+++|+.|.+.++.... ......+.
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhh
Confidence 688999999999875544442 25689999999998874 33333 57889999888754220 11112233
Q ss_pred cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccE
Q 043452 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL 351 (384)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 351 (384)
.+++|+.|++++|......|..+..+++|+.|++++|.....++... .+++|+.|++++|......|.. ..+|+.
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCE
Confidence 46789999999998877888889999999999999986443555543 5689999999999655455543 468999
Q ss_pred EEccCcccccccccccccCCCCceEeCcCCC
Q 043452 352 LTVSKNLLEGNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 352 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
|++++|.++ ..|..+..+++|+.|++++|+
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 999999998 678889999999999999975
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=4.4e-25 Score=202.32 Aligned_cols=359 Identities=28% Similarity=0.361 Sum_probs=244.2
Q ss_pred ccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECC
Q 043452 7 LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 86 (384)
+..|++..|.+. ..|.....+.-+|+.|+++++.+. .+|..+..+++|+.|+++.+.+. .+|....++.+|++++|.
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 456677777554 444455566667999999999988 78999999999999999999888 788889999999999999
Q ss_pred CCccccccccccCCCCCchhhhhhhcccCceeec----------cCC--------CCCCCCccEEEccCCCCCC-ccccc
Q 043452 87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE----------TEN--------WLPTSQLKVLHLRNCNLNG-TLGFL 147 (384)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----------~~~--------~~~~~~L~~L~l~~~~~~~-~~~~~ 147 (384)
.|...... ..+..+.+|++++++.+....... ... ++. ..++.+++..+.+.+ +...+
T Consensus 100 ~n~l~~lP--~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 100 NNRLQSLP--ASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred cchhhcCc--hhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhhhhhhhcccchhcch
Confidence 98776542 467888899999988765432110 000 111 124444444444333 33333
Q ss_pred cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc------------------ccccCccccCCceEeeec
Q 043452 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS------------------LQLSNSKLDFLHHLDISS 209 (384)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~~~L~~L~l~~ 209 (384)
..+.+ .+++.+|.+. ... ...+++|+.+....+++... ....-....+|+.++++.
T Consensus 177 ~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH 250 (1081)
T ss_pred hhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch
Confidence 33333 4666655543 111 22334444444433332210 000111235677888888
Q ss_pred CccCCCcchhHHHhccCCcEEEccCCcCCC----------------------ccchhccCCCCCcEEEeecccccccccc
Q 043452 210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEG----------------------SISSSISEMKDLRFLDLSRNQFSGELSA 267 (384)
Q Consensus 210 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 267 (384)
+++. .++.++.. |++|+.++..+|.++. ..+...+....|++|++..|.+. ..+.
T Consensus 251 n~l~-~lp~wi~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~ 327 (1081)
T KOG0618|consen 251 NNLS-NLPEWIGA-CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD 327 (1081)
T ss_pred hhhh-cchHHHHh-cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence 8777 66755554 7788888887776642 23333444577888888888775 2222
Q ss_pred chhc-------------------------cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452 268 PLLT-------------------------GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA 322 (384)
Q Consensus 268 ~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 322 (384)
.++. ..+.|..|.+.+|.+++.....+..+++|+.|+++.|.+. .+++..+...
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch
Confidence 2211 1234566677778887777777788899999999999987 7888878888
Q ss_pred ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
+.|+.|++++|.++ .+|..+..++.|+.|...+|++. ..| .+.+++.|+.+|+|-|+++
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 99999999999998 78899999999999999999998 677 8889999999999999875
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-23 Score=172.82 Aligned_cols=362 Identities=21% Similarity=0.171 Sum_probs=207.7
Q ss_pred cEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeec-CcccCccCccccCCCCccEEECC
Q 043452 8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS-NQLSGSLPSVIASLTSLQYLDLS 86 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~ 86 (384)
..++|..|.|+ .+|+.+|+.+++|+.|++++|.++.+.|++|..+++|..|-+.+ +.+++.-...|.++..|+.|.+.
T Consensus 70 veirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34566666665 66666666666666666666666666666666666665555544 56664444556666666666665
Q ss_pred CCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-------------cccccccc---
Q 043452 87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-------------TLGFLQKQ--- 150 (384)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------~~~~~~~~--- 150 (384)
-+.+.-. ....+..++++..|.+.++.... .....+..+..++.+.+-.+.+.. .+..+++.
T Consensus 149 an~i~Ci-r~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 149 ANHINCI-RQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred hhhhcch-hHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 5554332 22345555555555554332211 112233333344433332222000 00000000
Q ss_pred -------------------CCCCeE---eccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452 151 -------------------HDLKSL---DLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS 208 (384)
Q Consensus 151 -------------------~~L~~L---~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 208 (384)
..++.+ ..+.+...+..|...|+.+++|++|++++|.++.....+|.....+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 011111 1122333345677777888888888888888888778888888888888888
Q ss_pred cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchh---------------ccC
Q 043452 209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL---------------TGC 273 (384)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------------~~~ 273 (384)
+|++. .+...++.+++.|+.|++.+|+|+...+..+.....|.++++-.|++.-+-...++ .+.
T Consensus 307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 88886 67777778888888888888888877777777778888888888776522111111 112
Q ss_pred CcceEEEccCCcccc---cccc---------cccccCCcCeE-eCCCCcCCcccchhhhhccccceEEEcCCCccccccc
Q 043452 274 FSLWLLDLSHNSFCG---QVSP---------KFMNLTQLGWL-SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP 340 (384)
Q Consensus 274 ~~L~~L~l~~~~~~~---~~~~---------~~~~~~~L~~l-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 340 (384)
..++.+.+++..+.+ ..++ .-..|+.+.++ ..++..+. .++..+. ....++.+.+|.++ .+|
T Consensus 386 ~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP---~d~telyl~gn~~~-~vp 460 (498)
T KOG4237|consen 386 GFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP---VDVTELYLDGNAIT-SVP 460 (498)
T ss_pred chhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC---chhHHHhcccchhc-ccC
Confidence 235555554443321 1111 11122333322 12221221 2222211 24567888899888 556
Q ss_pred hhhhccCCccEEEccCcccccccccccccCCCCceEeCcCC
Q 043452 341 SWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381 (384)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 381 (384)
.. .+++| .+++++|++.......|.++.+|..|-|++|
T Consensus 461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 55 56777 8999999998666666889999999988875
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=1.1e-20 Score=166.27 Aligned_cols=260 Identities=24% Similarity=0.255 Sum_probs=184.2
Q ss_pred CCCCCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCccCC--Cc---HHHHhhhCCCccEEEcCCCCCcCccc
Q 043452 124 WLPTSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKLVG--SF---PAWLLQHNTKLEVLRLTNNSFTGSLQ 193 (384)
Q Consensus 124 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~--~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 193 (384)
+..+++|++++++++.+.. ++..+...+.++.+++.++.+.. .. ....+..+++|++|+++++.+.....
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3445568888888887744 45566777889999998876641 11 12234457899999999988865444
Q ss_pred ccCccc---cCCceEeeecCccCCCcchhHH---Hhc-cCCcEEEccCCcCCCc----cchhccCCCCCcEEEeeccccc
Q 043452 194 LSNSKL---DFLHHLDISSNSFTGRLPQNMS---TIL-QKLVYLDMSKNKFEGS----ISSSISEMKDLRFLDLSRNQFS 262 (384)
Q Consensus 194 ~~~~~~---~~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 262 (384)
..+..+ ++|++|++++|.+.+.....+. ..+ ++|+.|++++|.+++. ....+..+++|++|++++|.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 444434 4499999999988743333322 224 7899999999998742 2344566789999999999987
Q ss_pred cccccch---hccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhhhhc----cccceEEEcC
Q 043452 263 GELSAPL---LTGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGFLSS----ARSLQVLDIS 331 (384)
Q Consensus 263 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~ 331 (384)
+.....+ +...++|++|++++|.+.+.. ...+..+++|++|++++|.+++.....+... .+.|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 5332222 334569999999999887543 3345678899999999999885444443333 3699999999
Q ss_pred CCcccc----ccchhhhccCCccEEEccCcccccc----cccccccC-CCCceEeCcCCCC
Q 043452 332 NNKLVG----QIPSWIGNFSSLALLTVSKNLLEGN----IPVQLKNL-EALEILDVSENNL 383 (384)
Q Consensus 332 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~l~l~~~~~ 383 (384)
+|.+++ .+...+..+++|+.+++++|.+.+. ..+.+... +.|+.+++.+++|
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 998863 2345566778999999999999965 44444455 6899999999986
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=6.8e-19 Score=165.91 Aligned_cols=264 Identities=23% Similarity=0.239 Sum_probs=165.2
Q ss_pred cccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhh
Q 043452 31 NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110 (384)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 110 (384)
+-..|+++++.++ .+|..+. ++|+.|++++|.++ .+|. ..++|++|++++|.+++...
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~--------------- 259 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV--------------- 259 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccC---------------
Confidence 4566777777776 5566554 36777777777766 3443 24677777777776654310
Q ss_pred hcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC
Q 043452 111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG 190 (384)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 190 (384)
..++|+.|++++|.+..++.. ..+|+.|++++|.++ .+|. ..++|+.|++++|.+..
T Consensus 260 ---------------lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 260 ---------------LPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS 316 (788)
T ss_pred ---------------cccccceeeccCCchhhhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc
Confidence 123566666666665554432 245667777777665 4443 23667777777776664
Q ss_pred cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchh
Q 043452 191 SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270 (384)
Q Consensus 191 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 270 (384)
... ....|+.|.+++|.+. .++. ..++|+.|++++|+++.. +.. .++|+.|++++|.+. ..+.
T Consensus 317 Lp~----lp~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~--- 379 (788)
T PRK15387 317 LPA----LPSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPA--- 379 (788)
T ss_pred CCC----CcccccccccccCccc-cccc----cccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCcc---
Confidence 321 1235667777777776 4442 134677888888777743 221 256777777777775 2221
Q ss_pred ccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCcc
Q 043452 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA 350 (384)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 350 (384)
..++|+.|++++|.+.. .|.. ..+|+.|++++|.++ .++.. ..+|+.|++++|+++ .+|..+.++++|+
T Consensus 380 -l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 380 -LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred -cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence 23567888888887764 2322 256778888888876 34321 246777888888877 6777788888888
Q ss_pred EEEccCccccccccccc
Q 043452 351 LLTVSKNLLEGNIPVQL 367 (384)
Q Consensus 351 ~L~l~~~~~~~~~~~~~ 367 (384)
.|++++|++++..+..+
T Consensus 449 ~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 449 TVNLEGNPLSERTLQAL 465 (788)
T ss_pred eEECCCCCCCchHHHHH
Confidence 88888888877655554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=8e-19 Score=165.44 Aligned_cols=258 Identities=23% Similarity=0.277 Sum_probs=199.4
Q ss_pred CCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEE
Q 043452 54 TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL 133 (384)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 133 (384)
..-..|+++.+.++ .+|..+. ++|+.|.+.+|.++.... .+++|++|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~------------------------------lp~~Lk~L 247 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA------------------------------LPPELRTL 247 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC------------------------------CCCCCcEE
Confidence 45678999999888 6777664 479999999987775310 13689999
Q ss_pred EccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452 134 HLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213 (384)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (384)
++++|.+..++.. .++|+.|++.+|.+. .++. ..++|+.|++++|.++.... ..++|+.|++++|.+.
T Consensus 248 dLs~N~LtsLP~l---p~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 248 EVSGNQLTSLPVL---PPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA 315 (788)
T ss_pred EecCCccCcccCc---ccccceeeccCCchh-hhhh----chhhcCEEECcCCccccccc----cccccceeECCCCccc
Confidence 9999998887643 468999999999886 5554 23679999999998885432 3478999999999987
Q ss_pred CCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccc
Q 043452 214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293 (384)
Q Consensus 214 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (384)
.++. ..++|+.|++++|.++.. +. + .++|+.|++++|++. ..+. ..++|+.|++++|.+.. .|..
T Consensus 316 -~Lp~----lp~~L~~L~Ls~N~L~~L-P~-l--p~~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~L~~-LP~l 380 (788)
T PRK15387 316 -SLPA----LPSELCKLWAYNNQLTSL-PT-L--PSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL 380 (788)
T ss_pred -cCCC----CcccccccccccCccccc-cc-c--ccccceEecCCCccC-CCCC----CCcccceehhhcccccc-Cccc
Confidence 4543 245789999999998743 32 1 258999999999987 3332 24678999999998875 3432
Q ss_pred ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCC
Q 043452 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL 373 (384)
Q Consensus 294 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 373 (384)
..+|+.|++++|.++ .++.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..+..+++|
T Consensus 381 ---~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L 447 (788)
T PRK15387 381 ---PSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE 447 (788)
T ss_pred ---ccccceEEecCCccc-CCCCc----ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCC
Confidence 257999999999988 44432 368999999999998 46653 356889999999998 678899999999
Q ss_pred ceEeCcCCCCC
Q 043452 374 EILDVSENNLS 384 (384)
Q Consensus 374 ~~l~l~~~~~s 384 (384)
+.+++++|+|+
T Consensus 448 ~~LdLs~N~Ls 458 (788)
T PRK15387 448 TTVNLEGNPLS 458 (788)
T ss_pred CeEECCCCCCC
Confidence 99999999986
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-21 Score=162.27 Aligned_cols=294 Identities=19% Similarity=0.187 Sum_probs=156.8
Q ss_pred ecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccC
Q 043452 36 NLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115 (384)
Q Consensus 36 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 115 (384)
+.++..++ ++|..+. +.-.++.+..|.++..-+.+|+.+++||+|+|++|.|+..
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I---------------------- 106 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI---------------------- 106 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhc----------------------
Confidence 33333444 4455443 3556677777777766666777777777777777766533
Q ss_pred ceeeccCCCCCCCCccEEEccC-CCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCccc
Q 043452 116 TLEVETENWLPTSQLKVLHLRN-CNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQ 193 (384)
Q Consensus 116 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 193 (384)
.+++|..++++..|-+.+ +++.+++ ..|..+..++.|.+.-+.+. -++...+..++++..|.+..+.+.....
T Consensus 107 ----~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 107 ----APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred ----ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcc
Confidence 234455555555554444 5555544 45677778888888888776 6777777888888888888887776666
Q ss_pred ccCccccCCceEeeecCccCCC-cchhHHH----------hccCCcEEEccCCcCCCccchhccCC-CCCcEEEeecccc
Q 043452 194 LSNSKLDFLHHLDISSNSFTGR-LPQNMST----------ILQKLVYLDMSKNKFEGSISSSISEM-KDLRFLDLSRNQF 261 (384)
Q Consensus 194 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 261 (384)
..+..+..++.+.+..+.+... -..+... +.....-..+.+.++....+..+... ..+..=-.+.+..
T Consensus 182 ~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~ 261 (498)
T KOG4237|consen 182 GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP 261 (498)
T ss_pred ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence 6777778888888777763311 1111111 00111111111111111111111100 0111001111222
Q ss_pred ccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccch
Q 043452 262 SGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS 341 (384)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 341 (384)
.+..+..-|.++++|+.|++++|.++...+.+|.+..+++.|++..|++. .+..++|.+...|+.|++.+|+|+-..|.
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecc
Confidence 22333344555555555555555555555555555555555555555554 44445555555555555555555555555
Q ss_pred hhhccCCccEEEccCcccc
Q 043452 342 WIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~~ 360 (384)
+|..+.+|.+|++-.|++.
T Consensus 341 aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccccceeeeeehccCccc
Confidence 5555555555555555543
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=1.8e-19 Score=158.66 Aligned_cols=86 Identities=23% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCcceEEEccCCccccccccccc-----ccCCcCeEeCCCCcCCcccch---hhhhccccceEEEcCCCccccc----cc
Q 043452 273 CFSLWLLDLSHNSFCGQVSPKFM-----NLTQLGWLSLDNNNFSGRISN---GFLSSARSLQVLDISNNKLVGQ----IP 340 (384)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~----~~ 340 (384)
+++|++|++++|.+.+.....+. ..+.|+.|++++|.+++.... .....+++|+.+++++|.+.+. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 44455555555544432222211 125666677766666532222 1223335677777777766643 33
Q ss_pred hhhhcc-CCccEEEccCcc
Q 043452 341 SWIGNF-SSLALLTVSKNL 358 (384)
Q Consensus 341 ~~~~~~-~~L~~L~l~~~~ 358 (384)
.++... +.|++|++.+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 344444 567777777665
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=8.7e-17 Score=152.60 Aligned_cols=226 Identities=23% Similarity=0.329 Sum_probs=135.9
Q ss_pred CCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEee
Q 043452 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI 207 (384)
Q Consensus 128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 207 (384)
+.++.|++++|.+..++..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+... +..+ ..+|+.|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~L-P~~l--~s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITEL-PERL--PSALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcC-ChhH--hCCCCEEEC
Confidence 356677777776666555433 46777777777665 5555432 4577777777766633 2222 246777777
Q ss_pred ecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccc
Q 043452 208 SSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC 287 (384)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (384)
++|.+. .++..+ +++|+.|++++|.++.. +..+. ++|+.|++++|.+. ..+... .++|+.|++++|.++
T Consensus 270 s~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 270 FHNKIS-CLPENL---PEELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALT 338 (754)
T ss_pred cCCccC-cccccc---CCCCcEEECCCCccccC-cccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCccc
Confidence 777766 455433 24677777777776632 22221 35677777777765 222222 356777777777766
Q ss_pred ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccc-
Q 043452 288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ- 366 (384)
Q Consensus 288 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~- 366 (384)
. .|..+. ++|+.|++++|.++ .++..+ .+.|+.|++++|.++ .+|..+. .+|+.|++++|++. ..|..
T Consensus 339 ~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 339 S-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred c-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 4 333332 56777777777776 444332 256777777777776 4455443 25777777777776 33333
Q ss_pred ---cccCCCCceEeCcCCCCC
Q 043452 367 ---LKNLEALEILDVSENNLS 384 (384)
Q Consensus 367 ---~~~~~~L~~l~l~~~~~s 384 (384)
...++.+..+++.+|+|+
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 334577777777777764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.1e-15 Score=145.30 Aligned_cols=204 Identities=22% Similarity=0.329 Sum_probs=100.2
Q ss_pred CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452 129 QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS 208 (384)
Q Consensus 129 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 208 (384)
+|+.|++++|.+..++..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+... +..+ .++|+.|+++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISCL-PENL--PEELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCcc-cccc--CCCCcEEECC
Confidence 45555555555444433221 24555555555554 4444332 3455666655555422 2222 1356666666
Q ss_pred cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452 209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288 (384)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (384)
+|.+. .++..+. ++|+.|++++|.++.. +..+ .++|+.|++++|.++ ..+..+ +++|+.|++++|.+..
T Consensus 292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 292 DNSIR-TLPAHLP---SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITV 360 (754)
T ss_pred CCccc-cCcccch---hhHHHHHhcCCccccC-Cccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCc
Confidence 66555 3333221 2455666666655532 2211 245666666666554 222222 2456666666665553
Q ss_pred cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhh----hccCCccEEEccCcccc
Q 043452 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI----GNFSSLALLTVSKNLLE 360 (384)
Q Consensus 289 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~ 360 (384)
.|..+ .+.|+.|++++|.++ .++..+. ..|+.|++++|++. .+|..+ ..++++..|++.+|++.
T Consensus 361 -LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 361 -LPETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -CChhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 23222 145666666666665 3443322 24666666666655 333322 23355666666666654
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=6.9e-15 Score=121.91 Aligned_cols=237 Identities=22% Similarity=0.251 Sum_probs=169.2
Q ss_pred CCCCCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCc---cCCCcHHH------HhhhCCCccEEEcCCCCCc
Q 043452 124 WLPTSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNK---LVGSFPAW------LLQHNTKLEVLRLTNNSFT 189 (384)
Q Consensus 124 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~---~~~~~~~~------~~~~~~~L~~L~l~~~~~~ 189 (384)
..++.++++++++++.+.. +...+...+.|+..++++.. ..+++|.. .+..+|+|++++++.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3456788999999988765 55677777889999888742 22234432 2335679999999998776
Q ss_pred Cccc----ccCccccCCceEeeecCccCCCcchhHHH------------hccCCcEEEccCCcCCCc----cchhccCCC
Q 043452 190 GSLQ----LSNSKLDFLHHLDISSNSFTGRLPQNMST------------ILQKLVYLDMSKNKFEGS----ISSSISEMK 249 (384)
Q Consensus 190 ~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~L~~L~l~~~~~~~~----~~~~~~~~~ 249 (384)
.... .-++++..|++|.|.+|.+.......+.+ ..+.|+.+....|++.+. ....+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 4333 23456788999999999877433333222 246799999999988653 335566778
Q ss_pred CCcEEEeeccccccccc---cchhccCCcceEEEccCCccccc----ccccccccCCcCeEeCCCCcCCcccchh----h
Q 043452 250 DLRFLDLSRNQFSGELS---APLLTGCFSLWLLDLSHNSFCGQ----VSPKFMNLTQLGWLSLDNNNFSGRISNG----F 318 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~ 318 (384)
.|+.+++..|.+..... ...+..|++|++|++++|.++.. +...++.+++|+.++++.|.+....... +
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 99999999998863333 34567799999999999988754 3445677889999999999887554433 2
Q ss_pred hhccccceEEEcCCCccccc----cchhhhccCCccEEEccCcccc
Q 043452 319 LSSARSLQVLDISNNKLVGQ----IPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 319 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
-...|.|+.+.+.+|.++.. +..++...+.|+.|+|++|++.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 33367899999999988643 2334456788999999999993
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=3.3e-15 Score=111.47 Aligned_cols=158 Identities=26% Similarity=0.384 Sum_probs=113.9
Q ss_pred hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452 26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL 105 (384)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 105 (384)
+-++.+.+.|.+++++++ .+|..++.+.+|+.|++.+++++ ..|..+++++.|+.|+++-|++... ...+..++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~l--prgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNIL--PRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcC--ccccCCCchh
Confidence 334556666677777776 56666677777777777777666 6666677777777777766554322 2466667777
Q ss_pred hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185 (384)
Q Consensus 106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (384)
+++++..+.......+..|+.+..|+.|+++.+.+..++..+.++.+|+.|.+.++.+. .+|.++ +.+..|++|++-+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhccc
Confidence 77777766666666777788888888888888888878888888888888888888776 777777 3778888888888
Q ss_pred CCCc
Q 043452 186 NSFT 189 (384)
Q Consensus 186 ~~~~ 189 (384)
|.++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 8776
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=4.3e-15 Score=110.88 Aligned_cols=161 Identities=27% Similarity=0.371 Sum_probs=139.5
Q ss_pred CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452 4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 83 (384)
+...+.|.++++.++ .+ +..++++.+|+.|++++++++ .+|..++.+++|+.|+++-+.+. ..|..|+.+|.|..|
T Consensus 32 ~s~ITrLtLSHNKl~-~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 456678999999997 55 466899999999999999999 79999999999999999988877 899999999999999
Q ss_pred ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCcc
Q 043452 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL 163 (384)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 163 (384)
++.+|.+.......-+..++.|+-+.+++++. +..+....++++|+.|.+..+.+..++..+..+..|++|++.++.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 99999887665556677788999998886654 4566677889999999999999999999999999999999999998
Q ss_pred CCCcHHHH
Q 043452 164 VGSFPAWL 171 (384)
Q Consensus 164 ~~~~~~~~ 171 (384)
+ .+|.++
T Consensus 186 ~-vlppel 192 (264)
T KOG0617|consen 186 T-VLPPEL 192 (264)
T ss_pred e-ecChhh
Confidence 7 666554
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=1.3e-13 Score=114.51 Aligned_cols=241 Identities=20% Similarity=0.175 Sum_probs=175.5
Q ss_pred ccccccccCCCCeEeccCCccCCCcHHHHh---hhCCCccEEEcCCCC---Cc-------CcccccCccccCCceEeeec
Q 043452 143 TLGFLQKQHDLKSLDLSHNKLVGSFPAWLL---QHNTKLEVLRLTNNS---FT-------GSLQLSNSKLDFLHHLDISS 209 (384)
Q Consensus 143 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~---~~-------~~~~~~~~~~~~L~~L~l~~ 209 (384)
+...+.....++.+++++|.+..+...++. +..++|+..+++.-- .. .+...++..+|+|++++||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 445566778899999999988655555543 445677777776431 11 12233455778999999999
Q ss_pred CccCCCcchh---HHHhccCCcEEEccCCcCCCccc-------------hhccCCCCCcEEEeecccccccc---ccchh
Q 043452 210 NSFTGRLPQN---MSTILQKLVYLDMSKNKFEGSIS-------------SSISEMKDLRFLDLSRNQFSGEL---SAPLL 270 (384)
Q Consensus 210 ~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~---~~~~~ 270 (384)
|.+....+.. +.+.+..|++|++.+|.+..... .....-+.|+++...+|.+.+.. ....|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 9988666654 44557899999999998864322 22334589999999999876322 23456
Q ss_pred ccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhh---hhccccceEEEcCCCccccccchhh
Q 043452 271 TGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGF---LSSARSLQVLDISNNKLVGQIPSWI 343 (384)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~ 343 (384)
...+.|+.+.+..|.+.... ...+..|++|++|++..|.++......+ ++..+.|++|+++.|.+......++
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 66789999999999886543 3567789999999999999885544443 3445679999999999876655444
Q ss_pred -----hccCCccEEEccCcccccc----cccccccCCCCceEeCcCCCC
Q 043452 344 -----GNFSSLALLTVSKNLLEGN----IPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 344 -----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~ 383 (384)
.+.++|+.+.+.+|.++.. ...++...|.|.+|++++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3578999999999999864 334456689999999999976
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.9e-14 Score=119.72 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=127.6
Q ss_pred ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC--cccccCccccCCceEeeecCccCCCcchhHHH
Q 043452 145 GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG--SLQLSNSKLDFLHHLDISSNSFTGRLPQNMST 222 (384)
Q Consensus 145 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 222 (384)
..=.++++|+++.+.++.............|++++.|+++.|-+.. ........+|+|+.|+++.|.+.-........
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 3345567788888877766433322455677888888888775542 22333456777888888777765333333334
Q ss_pred hccCCcEEEccCCcCCC-ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccc-cccccccCCc
Q 043452 223 ILQKLVYLDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQV-SPKFMNLTQL 300 (384)
Q Consensus 223 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 300 (384)
.++.|+.|.++.|.++- .....+..+|+|+.|.+.+|... .....-...+..|++|++++|.+.+.. -.....++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 46677777777777752 12334456777777777777421 111122233556777777777665422 1234456777
Q ss_pred CeEeCCCCcCCcccchhh-----hhccccceEEEcCCCccccc-cchhhhccCCccEEEccCccccc
Q 043452 301 GWLSLDNNNFSGRISNGF-----LSSARSLQVLDISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 301 ~~l~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+.++++.+.+...-.+.. ....++|+.|++..|++.+. -...+..+++|+.|.+-.+++..
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777777776653222221 33456777777777777421 22344556677777777776664
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.4e-13 Score=112.80 Aligned_cols=212 Identities=21% Similarity=0.189 Sum_probs=145.2
Q ss_pred CCCCCccEEEccCCCCCCcc--ccccccCCCCeEeccCCccC-CCcHHHHhhhCCCccEEEcCCCCCcCccccc-Ccccc
Q 043452 125 LPTSQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLV-GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLS-NSKLD 200 (384)
Q Consensus 125 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 200 (384)
.++.+|+.+.+.++.+.... .....|++++.|+++.|-+. -.....++..+|+|+.|.++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34557778888877776644 47788888999999888553 2445567778899999999888765332211 12567
Q ss_pred CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452 201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280 (384)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 280 (384)
+|+.|.++.|+++.....++...+|+|+.|++.+|..-..-.....-+..|+.|++++|.+.+.......+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88899999999887777788888899999999888422122233334567888999998876444445556688888888
Q ss_pred ccCCccccccccc------ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 281 LSHNSFCGQVSPK------FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 281 l~~~~~~~~~~~~------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
++.+.+.+..-.. ...+++|+.|++..|++.+.-...-....++|..|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888776532211 2356788899998888853333332334467777777766553
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=2.6e-13 Score=115.20 Aligned_cols=254 Identities=20% Similarity=0.155 Sum_probs=137.9
Q ss_pred CccEEEccCCCCCC---ccccccccCCCCeEeccCC-ccCCCcHHHHhhhCCCccEEEcCCCC-CcCcccc-cCccccCC
Q 043452 129 QLKVLHLRNCNLNG---TLGFLQKQHDLKSLDLSHN-KLVGSFPAWLLQHNTKLEVLRLTNNS-FTGSLQL-SNSKLDFL 202 (384)
Q Consensus 129 ~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L 202 (384)
.|+.|+++++.-.+ +-.....+|+++.|.+.+| .+++.....+...|++++++.+..|. +++.... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 34455554443332 2233444555555555554 23333444444455555555555432 2222111 11244555
Q ss_pred ceEeeecCc-cCCCcchhHHHhccCCc--------------------------EEEccCCc-CCCccc-hhccCCCCCcE
Q 043452 203 HHLDISSNS-FTGRLPQNMSTILQKLV--------------------------YLDMSKNK-FEGSIS-SSISEMKDLRF 253 (384)
Q Consensus 203 ~~L~l~~~~-~~~~~~~~~~~~~~~L~--------------------------~L~l~~~~-~~~~~~-~~~~~~~~L~~ 253 (384)
+++.+++|. +.+.....+.+++..++ .+++..|. +++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 555555543 33333334444444444 44443432 222111 11223456677
Q ss_pred EEeeccccc-cccccchhccCCcceEEEccCCcc-cccccccc-cccCCcCeEeCCCCcCC-cccchhhhhccccceEEE
Q 043452 254 LDLSRNQFS-GELSAPLLTGCFSLWLLDLSHNSF-CGQVSPKF-MNLTQLGWLSLDNNNFS-GRISNGFLSSARSLQVLD 329 (384)
Q Consensus 254 L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~ 329 (384)
+..+++... +.....+-.++++|+++.+..|+. ++.....+ .+++.|+.+++.++... +.....+..+|+.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 777766432 223334555678888888888753 32222222 25678888888887643 222445566788999999
Q ss_pred cCCC-ccccccchhh----hccCCccEEEccCcccc-cccccccccCCCCceEeCcCCC
Q 043452 330 ISNN-KLVGQIPSWI----GNFSSLALLTVSKNLLE-GNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 330 l~~~-~~~~~~~~~~----~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
+++| .+++....++ .++..|+.+.+++|+.+ +...+.+..|++|+++++-+|+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 9998 4565533333 45678999999999754 4566667889999999888875
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-12 Score=106.33 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=37.8
Q ss_pred ccEEEcCCCCCcCc-ccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCc-CCCc-cchhccCCCCCcEE
Q 043452 178 LEVLRLTNNSFTGS-LQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK-FEGS-ISSSISEMKDLRFL 254 (384)
Q Consensus 178 L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L 254 (384)
|+++++++..++.. ....+++|.+|+.|.+.+..+++.+...+++ -++|+.++++.|. ++.. ....+.+|++|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 55555555444321 2223344555555555555555444444444 3445555555442 2211 12233445555555
Q ss_pred Eeeccccc
Q 043452 255 DLSRNQFS 262 (384)
Q Consensus 255 ~l~~~~~~ 262 (384)
+++.|...
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=1.5e-11 Score=95.64 Aligned_cols=123 Identities=31% Similarity=0.329 Sum_probs=35.0
Q ss_pred CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (384)
++++|++.+|.+. .+ ...-..+.+|+.|++++|.+... ..+..++.|++|++++|.++ .+...+...+|+|++|.
T Consensus 20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 4455555555543 11 11111244555555555555432 12444556666666666665 33333333456666666
Q ss_pred cCCCccccc-cchhhhccCCccEEEccCcccccc---cccccccCCCCceEe
Q 043452 330 ISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEGN---IPVQLKNLEALEILD 377 (384)
Q Consensus 330 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~ 377 (384)
+++|.+.+. ....+..+++|+.|++.+|+++.. -...+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666655432 224455666666666666666532 111245566666664
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=4.1e-13 Score=114.06 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=83.7
Q ss_pred chhHHHhccCCcEEEccCCcC-CCccchhc-cCCCCCcEEEeeccc-cccccccchhccCCcceEEEccCCcccccc--c
Q 043452 217 PQNMSTILQKLVYLDMSKNKF-EGSISSSI-SEMKDLRFLDLSRNQ-FSGELSAPLLTGCFSLWLLDLSHNSFCGQV--S 291 (384)
Q Consensus 217 ~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~ 291 (384)
...+..++..|+.+..+++.- ++.....+ .++++|+.+.+.+|+ +++.....+-.+++.|+.+++.++....+. .
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 334444455566666655432 22222222 345666666666665 332222334445666666666665433221 1
Q ss_pred ccccccCCcCeEeCCCCcC-Ccccch---hhhhccccceEEEcCCCc-cccccchhhhccCCccEEEccCcc-ccccccc
Q 043452 292 PKFMNLTQLGWLSLDNNNF-SGRISN---GFLSSARSLQVLDISNNK-LVGQIPSWIGNFSSLALLTVSKNL-LEGNIPV 365 (384)
Q Consensus 292 ~~~~~~~~L~~l~l~~~~~-~~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~ 365 (384)
..-..|+.|+.+.+++|.. ++.... .-......++.+.+++|. +++...+.+..|++|+.+++.+|+ ++.+..+
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 2223566777777776653 222111 111233567777777774 455666677778888888888875 3333333
Q ss_pred cc-ccCCCCceE
Q 043452 366 QL-KNLEALEIL 376 (384)
Q Consensus 366 ~~-~~~~~L~~l 376 (384)
.| .++|+++..
T Consensus 446 ~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 446 RFATHLPNIKVH 457 (483)
T ss_pred HHHhhCccceeh
Confidence 33 456666543
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.5e-12 Score=105.97 Aligned_cols=199 Identities=24% Similarity=0.182 Sum_probs=143.7
Q ss_pred CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCc-cCCCcchhHHHhccCCcE
Q 043452 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS-FTGRLPQNMSTILQKLVY 229 (384)
Q Consensus 151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~ 229 (384)
..|+.++++...++..-...+.+.|.+|+.|.+.+.++.+.+...+++-.+|+.++++.+. +++.....+...|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3589999999888767777888999999999999999999988899999999999999865 665566778888999999
Q ss_pred EEccCCcCCCccchhcc--CCCCCcEEEeeccccc--cccccchhccCCcceEEEccCCc-ccccccccccccCCcCeEe
Q 043452 230 LDMSKNKFEGSISSSIS--EMKDLRFLDLSRNQFS--GELSAPLLTGCFSLWLLDLSHNS-FCGQVSPKFMNLTQLGWLS 304 (384)
Q Consensus 230 L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~ 304 (384)
|+++.|.........+. --++|+.|+++|+... ..-.....+.|++|..||+++|. +.......+.+++-|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999987644322221 2378999999998543 22233455678999999998864 4444445566788899999
Q ss_pred CCCCcCCcccchhh--hhccccceEEEcCCCccccccchhhhccCCccE
Q 043452 305 LDNNNFSGRISNGF--LSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL 351 (384)
Q Consensus 305 l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 351 (384)
++.|+.. ++..+ +...|+|.+|++.+|--....--...++++|+.
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 9988742 23222 344578888888887322122122245666543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3.9e-11 Score=93.37 Aligned_cols=109 Identities=25% Similarity=0.321 Sum_probs=42.8
Q ss_pred hccCCcceEEEccCCccccccccccc-ccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhh-hccC
Q 043452 270 LTGCFSLWLLDLSHNSFCGQVSPKFM-NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI-GNFS 347 (384)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 347 (384)
+.++.++++|++++|.++... .+. .+.+|+.|++++|.++ .+.. +..++.|++|++++|.+++. .+.+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 345668999999999997532 333 5688999999999998 4432 56679999999999999954 4444 5799
Q ss_pred CccEEEccCcccccc-cccccccCCCCceEeCcCCCCC
Q 043452 348 SLALLTVSKNLLEGN-IPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 348 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~s 384 (384)
+|++|++++|++.+. ....+..+|+|+.|++.+||++
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 999999999999863 3356788999999999999985
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=2.8e-11 Score=98.93 Aligned_cols=131 Identities=27% Similarity=0.297 Sum_probs=102.0
Q ss_pred cCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452 246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325 (384)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 325 (384)
..++-|+++++++|.++ .+ .+...-.|.++.|++++|.+..... ++.+++|+.|++++|.++ ...++-..+.+.
T Consensus 281 dTWq~LtelDLS~N~I~-~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QI-DESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA--ECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchh-hh-hhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhH--hhhhhHhhhcCE
Confidence 34467899999999886 32 2333457899999999999875443 667889999999999886 334556667899
Q ss_pred eEEEcCCCccccccchhhhccCCccEEEccCccccc-ccccccccCCCCceEeCcCCCCC
Q 043452 326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG-NIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 326 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|.+++|.+. . ...+..+-+|..||+++|++.. .....++++|-|+.+.+.+||++
T Consensus 355 KtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 99999999776 2 2345778889999999999875 34455899999999999999974
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.10 E-value=9.4e-11 Score=75.12 Aligned_cols=61 Identities=41% Similarity=0.519 Sum_probs=51.5
Q ss_pred ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
|+|++|++++|.+....+++|.++++|+.|++++|++..+.+..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5688888888888866667888888899999998888877778888889999999888875
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=5.9e-11 Score=115.14 Aligned_cols=83 Identities=28% Similarity=0.392 Sum_probs=45.8
Q ss_pred CccccEEeCcCcc--cccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452 4 FKNLKALDLSYTG--INGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ 81 (384)
Q Consensus 4 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 81 (384)
++.|++|-+..+. +. .++...|..+|.|+.|++++|.-...+|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 4455555555553 22 343344555666666666654433355666666666666666665555 5555566666666
Q ss_pred EEECCCC
Q 043452 82 YLDLSDN 88 (384)
Q Consensus 82 ~L~l~~~ 88 (384)
+|++..+
T Consensus 622 ~Lnl~~~ 628 (889)
T KOG4658|consen 622 YLNLEVT 628 (889)
T ss_pred eeccccc
Confidence 6666544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=4.3e-10 Score=92.10 Aligned_cols=126 Identities=26% Similarity=0.252 Sum_probs=66.7
Q ss_pred ccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEee
Q 043452 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257 (384)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 257 (384)
|++++++.|.++ .+.+...-.|.++.|+++.|.+. .+.. ...+++|+.|++++|.++. ...+-..+.++++|.++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 445555554444 22233334455555555555554 2222 2225566666666665542 22223345666777777
Q ss_pred ccccccccccchhccCCcceEEEccCCcccc-cccccccccCCcCeEeCCCCcCC
Q 043452 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCG-QVSPKFMNLTQLGWLSLDNNNFS 311 (384)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~ 311 (384)
+|.+.. ..-+.++-+|..|++++|++.. +....+.++|.|+.+.+.+|++.
T Consensus 361 ~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 766541 1123345566677777776653 12234567777888888888776
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.2e-09 Score=70.00 Aligned_cols=61 Identities=34% Similarity=0.462 Sum_probs=48.5
Q ss_pred CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccc
Q 043452 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL 359 (384)
Q Consensus 298 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 359 (384)
++|++|++++|.++ .++...+..+++|++|++++|.+....+++|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46778888888777 66777777788888888888888777777888888888888888864
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2.6e-09 Score=96.84 Aligned_cols=201 Identities=32% Similarity=0.408 Sum_probs=127.6
Q ss_pred CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccc-cCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452 154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKL-DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232 (384)
Q Consensus 154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 232 (384)
..+....+........ ....+.++.+++.++.++.... ..... ++|+.|+++++.+. ..+..+.. +++|+.|++
T Consensus 96 ~~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l 170 (394)
T COG4886 96 PSLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDL 170 (394)
T ss_pred ceeeccccccccCchh--hhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhc-ccccccccc
Confidence 3577777665322222 2244778888888887774433 33344 37888888888876 55433333 778888888
Q ss_pred cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCc
Q 043452 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 312 (384)
++|.+.+. +......+.|+.+++++|++. ..+... ....+|+++.+++|.+. ..+..+..+..+..+.+.++.+..
T Consensus 171 ~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 171 SFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred CCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee
Confidence 88888733 333336678888888888876 333321 22456888888887533 233445566677777777776652
Q ss_pred ccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccc
Q 043452 313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL 367 (384)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 367 (384)
. ......++.++.|++++|.+.+... +....+++.|+++++.+....+...
T Consensus 247 ~--~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 247 L--PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred c--cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 1 2334555678888888887774333 6777888888888887775554443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.7e-09 Score=105.16 Aligned_cols=199 Identities=26% Similarity=0.309 Sum_probs=120.8
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCc--cccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNA--IEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 82 (384)
...|...+-++.+. .+.. -..+++|+.|-+..+. +.......|..+|.|+.||+++|.-...+|..++.+-+||+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34566666666554 3321 2355689999988885 55455556778999999999987766689999999999999
Q ss_pred EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC---ccccccccCCCCeEecc
Q 043452 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG---TLGFLQKQHDLKSLDLS 159 (384)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~ 159 (384)
|+++++.+.... ..+.++..|.+|++......... ......+++|++|.+....... ....+.++.+|+.+...
T Consensus 600 L~L~~t~I~~LP--~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTGISHLP--SGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccCCCccccc--hHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 999999877442 56778888888888766544333 4455557888888876655322 23334455555555443
Q ss_pred CCccCCCcHHHHhhhCCCcc----EEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452 160 HNKLVGSFPAWLLQHNTKLE----VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213 (384)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (384)
.... .+...+ ..++.|. .+.+.++.. ......+..+.+|+.|.+.++.+.
T Consensus 677 ~~s~--~~~e~l-~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 677 ISSV--LLLEDL-LGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cchh--HhHhhh-hhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCc
Confidence 3221 011111 1222222 222222111 223344556677777777777665
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=1e-08 Score=97.56 Aligned_cols=107 Identities=29% Similarity=0.448 Sum_probs=87.8
Q ss_pred cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452 275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV 354 (384)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 354 (384)
.++.|++++|.+.+..+..+..+++|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+.+|+.+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3778888888888888888888889999999998888666654 566788999999999888888888889999999999
Q ss_pred cCcccccccccccccC-CCCceEeCcCCC
Q 043452 355 SKNLLEGNIPVQLKNL-EALEILDVSENN 382 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~L~~l~l~~~~ 382 (384)
++|++.+..|..+... .++..+++++|+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9999888888887653 466777777765
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.81 E-value=2.9e-09 Score=86.04 Aligned_cols=234 Identities=18% Similarity=0.163 Sum_probs=155.0
Q ss_pred CCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCcc---CCCcHHH------HhhhCCCccEEEcCCCCCcCcc
Q 043452 127 TSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKL---VGSFPAW------LLQHNTKLEVLRLTNNSFTGSL 192 (384)
Q Consensus 127 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~---~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~ 192 (384)
+..+..+++++|.+.. +...+.+-.+|+..++++-.. .++++.. ....||+++.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5577888888888765 445556667788888776421 2233222 2346788999999888765332
Q ss_pred ----cccCccccCCceEeeecCccCCCcchhHH------------HhccCCcEEEccCCcCCCc----cchhccCCCCCc
Q 043452 193 ----QLSNSKLDFLHHLDISSNSFTGRLPQNMS------------TILQKLVYLDMSKNKFEGS----ISSSISEMKDLR 252 (384)
Q Consensus 193 ----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~ 252 (384)
...+++...|.+|.+.+|.+.......+. ..-|.|+.+....|++..- ....+....+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 33456778899999998886532222222 1136799999999887642 222333346899
Q ss_pred EEEeeccccccccccc----hhccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhhhhc---
Q 043452 253 FLDLSRNQFSGELSAP----LLTGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGFLSS--- 321 (384)
Q Consensus 253 ~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--- 321 (384)
++++..|.|....... -...+.+|+.|++.+|.++-.. ..+++..+.|+.|.+..|-+.......++..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 9999999987442221 1234789999999999887433 3455667789999999998875555544433
Q ss_pred --cccceEEEcCCCccccc------cchhh-hccCCccEEEccCcccc
Q 043452 322 --ARSLQVLDISNNKLVGQ------IPSWI-GNFSSLALLTVSKNLLE 360 (384)
Q Consensus 322 --~~~L~~L~l~~~~~~~~------~~~~~-~~~~~L~~L~l~~~~~~ 360 (384)
.|+|..|.+.+|...+. .+... ..++-|..|.+.||++.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 36888899988865432 22222 25777888889999887
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=1.4e-08 Score=92.12 Aligned_cols=174 Identities=33% Similarity=0.411 Sum_probs=115.3
Q ss_pred CCccEEEccCCCCCCccccccccC-CCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEe
Q 043452 128 SQLKVLHLRNCNLNGTLGFLQKQH-DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLD 206 (384)
Q Consensus 128 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 206 (384)
+.++.+.+..+.+..++....... +|+.|+++++.+. .++.. ...+++|+.|+++.|++.+... .....+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhh-hhhhhhhhhhee
Confidence 567777777777777777666664 7888888887775 44322 3477888888888877774333 222567788888
Q ss_pred eecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcc
Q 043452 207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286 (384)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (384)
++++.+. .++..+.. ...|+++.++++.+. ..+..+....++..+.+.++++.. .......+++++.|++++|.+
T Consensus 193 ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 193 LSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred ccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee--ccchhccccccceeccccccc
Confidence 8888776 56654322 445788888777533 334556666777777777776642 133445566788888888777
Q ss_pred cccccccccccCCcCeEeCCCCcCC
Q 043452 287 CGQVSPKFMNLTQLGWLSLDNNNFS 311 (384)
Q Consensus 287 ~~~~~~~~~~~~~L~~l~l~~~~~~ 311 (384)
..... +....+++.++++++.+.
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccc--ccccCccCEEeccCcccc
Confidence 65443 666777888888777665
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=6.9e-10 Score=98.44 Aligned_cols=196 Identities=28% Similarity=0.342 Sum_probs=137.4
Q ss_pred ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCc
Q 043452 149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV 228 (384)
Q Consensus 149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 228 (384)
.+..-...+++.|++. ++|..+. .+..|+.+.++.|.+. ..+..+..+..|+.++++.|++. ..+..++. + -|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cce
Confidence 3344466777888776 6666553 4466777777777666 45667778888889999888887 67766654 4 388
Q ss_pred EEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCC
Q 043452 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN 308 (384)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 308 (384)
.|.+++|+++ ..+..++..+.|..++.+.|.+. ..+. ...++.+|+.|.++.|.+.. .|+.++.++ |.+|++++|
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps-ql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS-QLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCN 221 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH-HhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccC
Confidence 8888888888 55666667788888888888875 3333 34567788888888887764 344445444 778888888
Q ss_pred cCCcccchhhhhccccceEEEcCCCccccccchhhhcc---CCccEEEccCcc
Q 043452 309 NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF---SSLALLTVSKNL 358 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~ 358 (384)
++. .++.+ |..+..|++|-|.+|.+. .-|..++.. .-.|+|+.+-|+
T Consensus 222 kis-~iPv~-fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KIS-YLPVD-FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cee-ecchh-hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 886 55554 556788888888888887 555555432 235667777774
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.72 E-value=2.2e-08 Score=95.31 Aligned_cols=89 Identities=35% Similarity=0.614 Sum_probs=76.0
Q ss_pred cccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEEC
Q 043452 6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 85 (384)
.++.|+|+++.+.|.+ +..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+.++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3678888888888766 567888899999999999888888888889999999999999888888888889999999999
Q ss_pred CCCccccccc
Q 043452 86 SDNYFQGIFY 95 (384)
Q Consensus 86 ~~~~~~~~~~ 95 (384)
++|.+++..+
T Consensus 498 s~N~l~g~iP 507 (623)
T PLN03150 498 NGNSLSGRVP 507 (623)
T ss_pred cCCcccccCC
Confidence 9988877655
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=1.6e-09 Score=96.27 Aligned_cols=191 Identities=23% Similarity=0.342 Sum_probs=144.6
Q ss_pred ccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEee
Q 043452 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257 (384)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 257 (384)
-...+++.|.+. ..+..+..+-.|..+.+..|.+. .++..+.. +..|+.++++.|++. ..+..+..+| |+.+-++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 345677777776 34445566677888888888887 77777766 778999999999888 5566666666 8999999
Q ss_pred ccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337 (384)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (384)
+|+++ ..+...- ..+.|..|+.+.|.+.. .+..+..+.+|+.+.++.|.+. ..+..+. .-.|..||++.|.+.
T Consensus 152 NNkl~-~lp~~ig-~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 152 NNKLT-SLPEEIG-LLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS- 224 (722)
T ss_pred cCccc-cCCcccc-cchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee-
Confidence 99887 4444443 67889999999998874 4556677888999999999887 5666554 357889999999998
Q ss_pred ccchhhhccCCccEEEccCccccccccccc---ccCCCCceEeCcCC
Q 043452 338 QIPSWIGNFSSLALLTVSKNLLEGNIPVQL---KNLEALEILDVSEN 381 (384)
Q Consensus 338 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~ 381 (384)
.+|..|..|+.|+.|-|.+|++. ..|..+ +...-.++|++.-|
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88999999999999999999997 444443 33455666666555
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=5.1e-09 Score=84.67 Aligned_cols=215 Identities=22% Similarity=0.198 Sum_probs=116.3
Q ss_pred hhccccccEEecCCCccccCCchhhh----cCCCCCEEEeecCccc---C-------ccCccccCCCCccEEECCCCccc
Q 043452 26 ICELKNLIELNLEGNAIEGPLPQCLK----NLTRLKVFGISSNQLS---G-------SLPSVIASLTSLQYLDLSDNYFQ 91 (384)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~ 91 (384)
+..+..++.+++++|.+......+++ .-.+|+..++++-... + ....++.+||+|+..++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 44577888888888887654444443 4467888887763222 1 12335668888888888888776
Q ss_pred cccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcc--------------ccccccCCCCeEe
Q 043452 92 GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL--------------GFLQKQHDLKSLD 157 (384)
Q Consensus 92 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~L~ 157 (384)
..++.. ..+.+...+.|++|.+++|++..+. +....-|.|+++.
T Consensus 106 ~~~~e~----------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 106 SEFPEE----------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred cccchH----------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 554311 1112233456667777666654311 2334456777777
Q ss_pred ccCCccCC---CcHHHHhhhCCCccEEEcCCCCCcCcc-----cccCccccCCceEeeecCccCCCcchhHH---HhccC
Q 043452 158 LSHNKLVG---SFPAWLLQHNTKLEVLRLTNNSFTGSL-----QLSNSKLDFLHHLDISSNSFTGRLPQNMS---TILQK 226 (384)
Q Consensus 158 l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~ 226 (384)
+..|++.. ......+..-.+|+.+.+..|.+.... ...+..+.+|+.|++..|.++......+. ..++.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 77776531 112222333346677777666665321 11223445666666666666533332222 12345
Q ss_pred CcEEEccCCcCCCccchhc------cCCCCCcEEEeeccccc
Q 043452 227 LVYLDMSKNKFEGSISSSI------SEMKDLRFLDLSRNQFS 262 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~ 262 (384)
|+.|.+.+|-++......+ ...|+|..|....|.+.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 6666666665543322211 12356666666665544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.8e-08 Score=82.59 Aligned_cols=191 Identities=20% Similarity=0.104 Sum_probs=101.1
Q ss_pred ccccCCCCeEeccCCccCC-CcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhcc
Q 043452 147 LQKQHDLKSLDLSHNKLVG-SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ 225 (384)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (384)
-..+..++.+++.+|.+++ +-...++..+|.|+.|.++.|++...+..--....+|+.|.+.+..+......+....+|
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3445667777777776643 223345566777777777777666443322245567777777777666555555666666
Q ss_pred CCcEEEccCCcCCC--ccchhc-cCCCCCcEEEeeccccccc-cccchhccCCcceEEEccCCccccccc-ccccccCCc
Q 043452 226 KLVYLDMSKNKFEG--SISSSI-SEMKDLRFLDLSRNQFSGE-LSAPLLTGCFSLWLLDLSHNSFCGQVS-PKFMNLTQL 300 (384)
Q Consensus 226 ~L~~L~l~~~~~~~--~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 300 (384)
.+++|.++.|.... ...... ...+-++++.+.+|...-. ......+-+|++..+-+.+|++-+... .....++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 77777776663221 111111 1223555565555543210 111122234566666555555433221 122334555
Q ss_pred CeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337 (384)
Q Consensus 301 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (384)
.-|+++.+.+.+.........+++|..|.++++.+.+
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 5566666666544444455556666666666665543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.6e-08 Score=82.91 Aligned_cols=166 Identities=17% Similarity=0.089 Sum_probs=100.8
Q ss_pred CCCCCCCccEEEccCCCCCCccccc-cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc--ccccCc-c
Q 043452 123 NWLPTSQLKVLHLRNCNLNGTLGFL-QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS--LQLSNS-K 198 (384)
Q Consensus 123 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~-~ 198 (384)
.+.++|.|+.|+++.|.+......+ ....+|++|.+++..+...-...+...+|+++.|+++.|..... ...... -
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~ 171 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW 171 (418)
T ss_pred HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc
Confidence 3456778888888888776644444 46677888888877665455556666778888888887744311 111111 1
Q ss_pred ccCCceEeeecCccC-CCcchhHHHhccCCcEEEccCCcCCCcc-chhccCCCCCcEEEeeccccccccccchhccCCcc
Q 043452 199 LDFLHHLDISSNSFT-GRLPQNMSTILQKLVYLDMSKNKFEGSI-SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSL 276 (384)
Q Consensus 199 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 276 (384)
.+.++.+..-+|... ......+.+.+|++..+-+..|.+.... -.....+|.+.-|+++.+++........+.+++.|
T Consensus 172 s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l 251 (418)
T KOG2982|consen 172 STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQL 251 (418)
T ss_pred chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchh
Confidence 234555555555432 0111223445677777777777665432 23344566777777777777655555666677777
Q ss_pred eEEEccCCcccc
Q 043452 277 WLLDLSHNSFCG 288 (384)
Q Consensus 277 ~~L~l~~~~~~~ 288 (384)
.-|.+.++++.+
T Consensus 252 ~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 252 VDLRVSENPLSD 263 (418)
T ss_pred heeeccCCcccc
Confidence 777777777664
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=3.2e-09 Score=97.01 Aligned_cols=126 Identities=29% Similarity=0.279 Sum_probs=69.2
Q ss_pred CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (384)
.|.+.+.+.|.++. ....+.-++.++.|++++|+++++- .+..|++|++|+|+.|.+. .++..-..+| .|..|.
T Consensus 165 ~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 45555555555531 2222233566677777777666433 4556667777777776665 3332212232 367777
Q ss_pred cCCCccccccchhhhccCCccEEEccCcccccccc-cccccCCCCceEeCcCCCC
Q 043452 330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP-VQLKNLEALEILDVSENNL 383 (384)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~ 383 (384)
+++|.++. + ..+.++++|+.||+++|-+.+... .-++.+..|++|++.|||+
T Consensus 239 lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77776652 1 224566677777777766654221 1234556666777777664
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.54 E-value=4.2e-08 Score=93.22 Aligned_cols=153 Identities=20% Similarity=0.261 Sum_probs=114.5
Q ss_pred ccccEEecCCCcccc-CCchhhh-cCCCCCEEEeecCcccC-ccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452 30 KNLIELNLEGNAIEG-PLPQCLK-NLTRLKVFGISSNQLSG-SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE 106 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~-~~~~~l~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 106 (384)
.+|++|+|+|..... .-+..++ .+|.|+.|.+++-.+.. .......++|+|..||++++.++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 689999999865431 2222333 47999999999876652 2345567899999999999988876 7899999999
Q ss_pred hhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-------ccccccCCCCeEeccCCccCCCcHHHHhhhCCCcc
Q 043452 107 FFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-------GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179 (384)
Q Consensus 107 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 179 (384)
.|.+.+-..........++.+++|+.|++|........ ..-..+|+|+.|++++..+...+...+...-|+|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99988777666566667788999999999877655422 22234789999999998888778888877778887
Q ss_pred EEEcCC
Q 043452 180 VLRLTN 185 (384)
Q Consensus 180 ~L~l~~ 185 (384)
.+..-+
T Consensus 279 ~i~~~~ 284 (699)
T KOG3665|consen 279 QIAALD 284 (699)
T ss_pred hhhhhh
Confidence 776443
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=1.3e-08 Score=92.58 Aligned_cols=197 Identities=29% Similarity=0.265 Sum_probs=95.0
Q ss_pred ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCc
Q 043452 149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV 228 (384)
Q Consensus 149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 228 (384)
.+..++.+.+..+.+. .+. .....+.+++.+++.++.+..... .+..+++|++|++++|.|........ ++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~---l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLST---LTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhh---ccchh
Confidence 3344444544444443 111 112344666666666666653322 14456666666666666653222211 33466
Q ss_pred EEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCC
Q 043452 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN 308 (384)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 308 (384)
.|++.+|.+... ..+..+++|+.+++++|.+....... ...+.+++.+++.+|.+..... +..+..+..+++..+
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDN 218 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccc
Confidence 666666666533 22333566666666666655222211 2345566666666665543221 222333344455555
Q ss_pred cCCcccchhhhhccc--cceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 309 NFSGRISNGFLSSAR--SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
.++..... . ... .|+.+.+++|.+. ..+..+..+..+..+++.++++.
T Consensus 219 ~i~~~~~l--~-~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 219 KISKLEGL--N-ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cceeccCc--c-cchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 54411111 0 111 2566666666655 22244455666666666666654
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.47 E-value=2e-08 Score=93.89 Aligned_cols=134 Identities=25% Similarity=0.160 Sum_probs=77.0
Q ss_pred cccCCCCeEeccCCc-cCCCcHHHHhhhCCCccEEEcCCC-CCcCc----ccccCccccCCceEeeecCc-cCCCcchhH
Q 043452 148 QKQHDLKSLDLSHNK-LVGSFPAWLLQHNTKLEVLRLTNN-SFTGS----LQLSNSKLDFLHHLDISSNS-FTGRLPQNM 220 (384)
Q Consensus 148 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~ 220 (384)
..++.|+.+.+.++. +++.....+...++.|+.|+++++ ..... .......+++|+.++++++. +++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 346777777777763 332223444557777777777752 11111 11223355777777777777 665666666
Q ss_pred HHhccCCcEEEccCCc-CCCc-cchhccCCCCCcEEEeeccccc-cccccchhccCCcceEEEc
Q 043452 221 STILQKLVYLDMSKNK-FEGS-ISSSISEMKDLRFLDLSRNQFS-GELSAPLLTGCFSLWLLDL 281 (384)
Q Consensus 221 ~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l 281 (384)
...|++|+.|.+.+|. +++. .......+++|++|++++|... +........+|++++.+.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 6667777777777665 4443 2333445677788887777543 2222333444666665543
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=1.5e-08 Score=92.07 Aligned_cols=109 Identities=26% Similarity=0.289 Sum_probs=53.7
Q ss_pred CCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCc
Q 043452 124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH 203 (384)
Q Consensus 124 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 203 (384)
+..+.+++.+++.++.+..+...+..+++|++|++++|.++ .+.. +..++.|+.|++.+|.++.... +..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhccC--Cccchhhh
Confidence 34445666666666666554444555666666666666554 2222 2233446666666655543221 22245555
Q ss_pred eEeeecCccCCCcchhHHHhccCCcEEEccCCcCC
Q 043452 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE 238 (384)
Q Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 238 (384)
.++++++.+. .........+.+++.+.+.++.+.
T Consensus 166 ~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 5555555554 222200122445555555555443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.43 E-value=4.8e-08 Score=92.82 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=113.9
Q ss_pred ccccEEeCcCcccccccchhhh-hccccccEEecCCCcccc-CCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452 5 KNLKALDLSYTGINGSLENQGI-CELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 82 (384)
.+|++|++++...-..-++..+ ..+|.|+.|.+++-.+.. .+......+|+|..||++++.++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4688899988643223333334 468999999999987753 3344556789999999999988844 67889999999
Q ss_pred EECCCCccccccccccCCCCCchhhhhhhcccCcee-----eccCCCCCCCCccEEEccCCCCCC--ccccccccCCCCe
Q 043452 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE-----VETENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKS 155 (384)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~ 155 (384)
|.+.+-.+........+.++++|++|+++....... ...+....+|+|+.|+.+++.+.. +...+...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 999988887766667888899999999987654332 233445668999999999988877 5556667777777
Q ss_pred EeccC
Q 043452 156 LDLSH 160 (384)
Q Consensus 156 L~l~~ 160 (384)
+..-+
T Consensus 280 i~~~~ 284 (699)
T KOG3665|consen 280 IAALD 284 (699)
T ss_pred hhhhh
Confidence 76543
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.35 E-value=1.2e-06 Score=65.83 Aligned_cols=124 Identities=18% Similarity=0.271 Sum_probs=64.2
Q ss_pred hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA 322 (384)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 322 (384)
..+..+++|+.+.+.. .+. .+....|.++++|+.+.+.++ +......+|..++.++.+.+.+ .+. .+....+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 4566677777777764 333 455666777777888887764 5555566777777788888865 333 4555567777
Q ss_pred ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCc
Q 043452 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALE 374 (384)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 374 (384)
++++.+.+..+ +......+|.++ +|+.+.+.+ .+..+....|.+|++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 88888888765 554566677777 888888876 44446667788888775
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=8.1e-07 Score=51.93 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=22.3
Q ss_pred cceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 324 SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+|++|++++|+++ .+|+.+.++++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666 445556666666666666666653
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.7e-08 Score=92.49 Aligned_cols=129 Identities=33% Similarity=0.330 Sum_probs=91.4
Q ss_pred CCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEE
Q 043452 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231 (384)
Q Consensus 152 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 231 (384)
+|...+.+.|.+. ........++.++.|+++.|++++.. .+..+++|++||+++|.+. .++..-..+|. |+.|+
T Consensus 165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 4556666666553 34444556788888888888887544 6778888888888888887 56544434454 88888
Q ss_pred ccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452 232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288 (384)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (384)
+++|.++. ...+.++.+|+.|+++.|-+.+......++.+..|+.|++.+|++..
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 88887763 35567788888888888877655455556667788888888887753
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.25 E-value=3.5e-07 Score=85.52 Aligned_cols=34 Identities=26% Similarity=0.167 Sum_probs=21.4
Q ss_pred ccEEEccCccccc-cccccccc-CCCCceEeCcCCC
Q 043452 349 LALLTVSKNLLEG-NIPVQLKN-LEALEILDVSENN 382 (384)
Q Consensus 349 L~~L~l~~~~~~~-~~~~~~~~-~~~L~~l~l~~~~ 382 (384)
++.|+++.|.... ........ +..++.+++++|+
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 5788888886432 22222322 7778888888775
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=1.1e-07 Score=68.99 Aligned_cols=109 Identities=26% Similarity=0.314 Sum_probs=57.2
Q ss_pred CCcEEEeeccccccccc--cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceE
Q 043452 250 DLRFLDLSRNQFSGELS--APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQV 327 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 327 (384)
.+..++++.|++- .+. .....+...|..+++++|.+.+..+.--.+++.++++++.+|++. .++.. +..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhh
Confidence 3445556666543 111 112223445555666666655433333334455666666666665 44444 445566666
Q ss_pred EEcCCCccccccchhhhccCCccEEEccCcccccc
Q 043452 328 LDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362 (384)
Q Consensus 328 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 362 (384)
|+++.|.+. ..|..+..+.+|-.|+..+|....+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 666666655 4455555566666666666655533
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=6.6e-06 Score=64.06 Aligned_cols=102 Identities=25% Similarity=0.244 Sum_probs=68.9
Q ss_pred cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccc-cchhhhccCCccEEE
Q 043452 275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ-IPSWIGNFSSLALLT 353 (384)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 353 (384)
....+++++|.+.. ...|..++.|.+|.+++|.|+ .+.+.+....+.|..|.+.+|++... -..-+..|+.|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45566777776642 234556777888888888887 66666666677888888888866532 123456788888888
Q ss_pred ccCcccccc-ccc--ccccCCCCceEeCc
Q 043452 354 VSKNLLEGN-IPV--QLKNLEALEILDVS 379 (384)
Q Consensus 354 l~~~~~~~~-~~~--~~~~~~~L~~l~l~ 379 (384)
+-+|++++. -.. .++.+|+|+.||-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 888887752 222 25678888888754
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.09 E-value=8.3e-06 Score=61.22 Aligned_cols=120 Identities=15% Similarity=0.239 Sum_probs=45.5
Q ss_pred hccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCe
Q 043452 223 ILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302 (384)
Q Consensus 223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 302 (384)
.+++|+.+.+.. .+.......+..+++++.+.+.++ +. ......|.++++++.+.+.+ .+.......|..+++|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccc
Confidence 344555555543 233333444555555666665553 22 34444555555566666644 232233344555666666
Q ss_pred EeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCcc
Q 043452 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA 350 (384)
Q Consensus 303 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 350 (384)
+.+..+ +. .+....+..+ .++.+.+.. .+......+|.+|++|+
T Consensus 86 i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 666543 33 4444455554 666666655 33334445666665553
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=4.7e-06 Score=48.68 Aligned_cols=37 Identities=38% Similarity=0.572 Sum_probs=26.3
Q ss_pred CCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|++|++++|++++ +|..+.+|++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 467888888888874 4445778888888888888775
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=3.2e-05 Score=60.36 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=70.5
Q ss_pred CCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCc-cchhccCCCCCcE
Q 043452 175 NTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS-ISSSISEMKDLRF 253 (384)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 253 (384)
..+...+++++|.+.. ...+.+++.|..|.+.+|+++ .+...+...+++|..|.+.+|.+... ....+..||.|+.
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3456667777665542 223556777888888888887 66666666677888888888776532 2344567788888
Q ss_pred EEeeccccccc--cccchhccCCcceEEEccCC
Q 043452 254 LDLSRNQFSGE--LSAPLLTGCFSLWLLDLSHN 284 (384)
Q Consensus 254 L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 284 (384)
|.+-+|++... +.......+|+|+.||+..-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88888876522 23344556777777777654
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.82 E-value=2.1e-06 Score=62.48 Aligned_cols=136 Identities=19% Similarity=0.170 Sum_probs=85.0
Q ss_pred CCcEEEccCCcCCC--ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452 226 KLVYLDMSKNKFEG--SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303 (384)
Q Consensus 226 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 303 (384)
.+..++++.|.+-. .....+.....|+.+++++|.+. ..+..+..+++.++.|++.+|.+.+. |..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence 45667777776541 12233344567777888888876 55666666677888888888888754 4447788888888
Q ss_pred eCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccc
Q 043452 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ 366 (384)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 366 (384)
+++.|.+. ..+..++. +.++..|+..+|.... ++..+-..+..-..++.+++..+..+..
T Consensus 106 Nl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAP-LIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccccCccc-cchHHHHH-HHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCccc
Confidence 88888876 44444444 5777788888887663 3333222222223344555666555443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=9.4e-07 Score=72.09 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=60.6
Q ss_pred cccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhh
Q 043452 29 LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108 (384)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 108 (384)
+.+.+.|+.+||.++++ ....+++.|+.|.++-|++++..| +.+|++|++|.|..|.|.+......++++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55677888888877754 344577888888888888774433 67888888888888888777666778888888888
Q ss_pred hhhccc
Q 043452 109 MLSLVN 114 (384)
Q Consensus 109 ~l~~~~ 114 (384)
.+..+.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 776543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.59 E-value=1.2e-05 Score=65.29 Aligned_cols=103 Identities=24% Similarity=0.253 Sum_probs=67.5
Q ss_pred ccEEeCcCccc-ccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecC--cccCccCccccCCCCccEE
Q 043452 7 LKALDLSYTGI-NGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN--QLSGSLPSVIASLTSLQYL 83 (384)
Q Consensus 7 L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L 83 (384)
.+.+.+.+|.- .|.+ ......+.+|+.+++.+..++. ...+..+|+|++|.++.+ .+..-+.-....+|+|+++
T Consensus 20 v~~l~lD~~~s~~g~~-~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l 96 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKL-GGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL 96 (260)
T ss_pred hhhhhcchhhhcCCCc-ccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence 34455555532 2334 3445667888888888887763 245677899999999998 5554444455677999999
Q ss_pred ECCCCccccccccccCCCCCchhhhhhhc
Q 043452 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSL 112 (384)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 112 (384)
++++|++........++.+.+|..|++..
T Consensus 97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n 125 (260)
T KOG2739|consen 97 NLSGNKIKDLSTLRPLKELENLKSLDLFN 125 (260)
T ss_pred eecCCccccccccchhhhhcchhhhhccc
Confidence 99999887544334455555555555443
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.0005 Score=60.91 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=25.1
Q ss_pred ccccccEEecCCCccccCCchhhhcCC-CCCEEEeecCcccCccCccccCCCCccEEECCCC
Q 043452 28 ELKNLIELNLEGNAIEGPLPQCLKNLT-RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88 (384)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 88 (384)
.+++++.|++++|.+. .+| .+| +|++|.+++|.-....|+.+ .++|++|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3455555555555444 333 122 35555555543322334322 235555555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=1.2e-05 Score=65.80 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=38.0
Q ss_pred CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (384)
+.++|+..||.++ ...+..+++.|++|.++-|++... ..+..|+.|++|+|+.|.|.+...-.-+.++|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444444444443 112223345555555555555432 23445666666666666655222223344455666666
Q ss_pred cCCC
Q 043452 330 ISNN 333 (384)
Q Consensus 330 l~~~ 333 (384)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 6655
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00064 Score=60.28 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=48.6
Q ss_pred hccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCe
Q 043452 223 ILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302 (384)
Q Consensus 223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 302 (384)
.+..+++|++++|.++.. | .+ .++|+.|.+.+|.-....+..+ .++|+.|++++|......| ..|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------cccce
Confidence 378999999999987744 3 22 2479999999875432333222 4689999999984322333 34666
Q ss_pred EeCCCCc
Q 043452 303 LSLDNNN 309 (384)
Q Consensus 303 l~l~~~~ 309 (384)
|++.++.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6666544
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00036 Score=56.90 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=72.4
Q ss_pred hccCCcceEEEccCCcccccccccccccCCcCeEeCCCC--cCCcccchhhhhccccceEEEcCCCcccc-ccchhhhcc
Q 043452 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN--NFSGRISNGFLSSARSLQVLDISNNKLVG-QIPSWIGNF 346 (384)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 346 (384)
......|+.+++.+..++. ...+..+++|++|.++.| .+.+.. ......+|+|+++.+++|.+.. .....+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l-~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGL-EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccc-eehhhhCCceeEEeecCCccccccccchhhhh
Confidence 3345667777777776653 234567889999999999 444222 2345556999999999997763 122345778
Q ss_pred CCccEEEccCcccccc---cccccccCCCCceEe
Q 043452 347 SSLALLTVSKNLLEGN---IPVQLKNLEALEILD 377 (384)
Q Consensus 347 ~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~ 377 (384)
.+|..|++.+|..+.. -...|.-+|+|+++|
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 8899999999987652 223366688888875
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.00015 Score=56.75 Aligned_cols=86 Identities=20% Similarity=0.131 Sum_probs=63.3
Q ss_pred cceEEEccCCcccccccccccccCCcCeEeCCCCcC-CcccchhhhhccccceEEEcCCC-ccccccchhhhccCCccEE
Q 043452 275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF-SGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIGNFSSLALL 352 (384)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 352 (384)
.++.++-+++.+..+.-+.+..++.++.|.+.+|.- .+.....+....++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 366777777777777777777788888888888753 32222233334578999999999 7888888888899999999
Q ss_pred EccCcccc
Q 043452 353 TVSKNLLE 360 (384)
Q Consensus 353 ~l~~~~~~ 360 (384)
.+.+-+-.
T Consensus 182 ~l~~l~~v 189 (221)
T KOG3864|consen 182 HLYDLPYV 189 (221)
T ss_pred HhcCchhh
Confidence 88886544
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00062 Score=53.37 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCC-ccccccchhhh-ccCCccEEEccCc-ccccccccccccCCCCc
Q 043452 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIG-NFSSLALLTVSKN-LLEGNIPVQLKNLEALE 374 (384)
Q Consensus 298 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 374 (384)
..++.++-+++.|....... +..++.++.|.+.+| .+.+...+.++ ..++|+.|+|++| ++++.....+.++++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 35788999998887444333 455688999999999 56655555554 4679999999999 57777888899999999
Q ss_pred eEeCcC
Q 043452 375 ILDVSE 380 (384)
Q Consensus 375 ~l~l~~ 380 (384)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 998875
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.35 E-value=5.8e-05 Score=69.08 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=18.2
Q ss_pred ceEEEcCCCccccc----cchhhhccCCccEEEccCccccc
Q 043452 325 LQVLDISNNKLVGQ----IPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 325 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
++++++..|.+++. +...+..++.++++.++.|++.+
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 35555555555432 22333445555555555555543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.88 E-value=0.0052 Score=29.65 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=12.2
Q ss_pred CccEEEccCccccccccccccc
Q 043452 348 SLALLTVSKNLLEGNIPVQLKN 369 (384)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~~~~ 369 (384)
+|+.|++++|+++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3666677777666 44444543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.69 E-value=0.00017 Score=66.02 Aligned_cols=183 Identities=26% Similarity=0.226 Sum_probs=84.2
Q ss_pred hhhhhhhcccCce---eeccCCCCCCCCccEEEccCCCCCC-----cccccccc-CCCCeEeccCCccCCCc----HHHH
Q 043452 105 LEFFMLSLVNNTL---EVETENWLPTSQLKVLHLRNCNLNG-----TLGFLQKQ-HDLKSLDLSHNKLVGSF----PAWL 171 (384)
Q Consensus 105 L~~l~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~ 171 (384)
+..+.+..+.... ......+...+.|+.|+++++.+.+ +...+... +.++.|++..|.++++. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5555555443322 2223344555666666666666654 12222222 44555666666554322 2222
Q ss_pred hhhCCCccEEEcCCCCCcCc----cccc----CccccCCceEeeecCccCCCcchhHHHh---ccC-CcEEEccCCcCCC
Q 043452 172 LQHNTKLEVLRLTNNSFTGS----LQLS----NSKLDFLHHLDISSNSFTGRLPQNMSTI---LQK-LVYLDMSKNKFEG 239 (384)
Q Consensus 172 ~~~~~~L~~L~l~~~~~~~~----~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~ 239 (384)
. ..+.++.++++.|.+... .... +....++++|.+.++.++......+... .+. +..+++..|.+.+
T Consensus 169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 2 245566666666554311 1111 1234456666666665553332222111 122 4445666555543
Q ss_pred cc----chhccCC-CCCcEEEeecccccccccc---chhccCCcceEEEccCCcccc
Q 043452 240 SI----SSSISEM-KDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCG 288 (384)
Q Consensus 240 ~~----~~~~~~~-~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~ 288 (384)
.. ...+..+ +.++++++..|.+++.... .....++.++++.+.+|.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 31 1222222 4556666666666533222 233345566666666666554
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.019 Score=27.69 Aligned_cols=21 Identities=48% Similarity=0.700 Sum_probs=12.7
Q ss_pred cceEEEcCCCccccccchhhhc
Q 043452 324 SLQVLDISNNKLVGQIPSWIGN 345 (384)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~~~ 345 (384)
+|+.|++++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566777777666 55554443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.58 E-value=0.023 Score=25.35 Aligned_cols=12 Identities=50% Similarity=0.700 Sum_probs=5.2
Q ss_pred CCceEeCcCCCC
Q 043452 372 ALEILDVSENNL 383 (384)
Q Consensus 372 ~L~~l~l~~~~~ 383 (384)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.93 E-value=0.025 Score=27.86 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=4.4
Q ss_pred CccEEEccCcccc
Q 043452 348 SLALLTVSKNLLE 360 (384)
Q Consensus 348 ~L~~L~l~~~~~~ 360 (384)
+|+.|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3344444444433
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.76 E-value=0.015 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=15.2
Q ss_pred cccceEEEcCCCccccccchhhh
Q 043452 322 ARSLQVLDISNNKLVGQIPSWIG 344 (384)
Q Consensus 322 ~~~L~~L~l~~~~~~~~~~~~~~ 344 (384)
+++|++|++++|.+.+..+.+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788888888888877666654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.01 E-value=0.28 Score=24.53 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=10.9
Q ss_pred ccccEEeCcCcccccccchhhh
Q 043452 5 KNLKALDLSYTGINGSLENQGI 26 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~ 26 (384)
++|++|+|++|.+. .++...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45555666555554 4544433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.01 E-value=0.28 Score=24.53 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=10.9
Q ss_pred ccccEEeCcCcccccccchhhh
Q 043452 5 KNLKALDLSYTGINGSLENQGI 26 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~ 26 (384)
++|++|+|++|.+. .++...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45555666555554 4544433
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.70 E-value=0.029 Score=45.34 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=30.4
Q ss_pred ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
+.++.++++.|.+. ..|..+.+...++.+++..|... ..|..+++.|++++++.-+++|
T Consensus 65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 44555555555544 44444455555555555555444 4455555555555555555544
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.10 E-value=0.41 Score=23.99 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=4.0
Q ss_pred CccEEEccCc
Q 043452 348 SLALLTVSKN 357 (384)
Q Consensus 348 ~L~~L~l~~~ 357 (384)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3334444443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.03 E-value=0.9 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=12.4
Q ss_pred cCCceEeeecCccCCCcchhHHH
Q 043452 200 DFLHHLDISSNSFTGRLPQNMST 222 (384)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~ 222 (384)
++|++|++++|.+..+....+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 34566666666665444444443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.76 E-value=0.1 Score=42.33 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=28.1
Q ss_pred hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCC
Q 043452 26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88 (384)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 88 (384)
+..+.+.+.|+++.+++. .....|..+..|..++++.+.+. +.|..+.....+++++...|
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n 98 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKN 98 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhcc
Confidence 444455555555555443 23333444444455555544444 44444444444444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.02 E-value=2.4 Score=21.31 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=5.7
Q ss_pred CccEEEccCccc
Q 043452 348 SLALLTVSKNLL 359 (384)
Q Consensus 348 ~L~~L~l~~~~~ 359 (384)
+|+.|++++|++
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444555555443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.83 E-value=4.3 Score=20.40 Aligned_cols=14 Identities=50% Similarity=0.487 Sum_probs=10.5
Q ss_pred CCccEEEccCcccc
Q 043452 347 SSLALLTVSKNLLE 360 (384)
Q Consensus 347 ~~L~~L~l~~~~~~ 360 (384)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35777888888876
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.69 E-value=7.6 Score=36.17 Aligned_cols=85 Identities=26% Similarity=0.203 Sum_probs=52.4
Q ss_pred cccCCCCeEeccCCccC-CCcHHHHhhhCCCccEEEcCCCCCcCcccccC--ccccCCceEeeecCccCCCc------ch
Q 043452 148 QKQHDLKSLDLSHNKLV-GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN--SKLDFLHHLDISSNSFTGRL------PQ 218 (384)
Q Consensus 148 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~------~~ 218 (384)
.+.|.+..+.+++|++- -+....+....|+|+.|+|+.|.........+ -+...|++|.+.+|.+...+ ..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 45577888888888663 12334455677899999999883321111122 23456888889998876433 23
Q ss_pred hHHHhccCCcEEEc
Q 043452 219 NMSTILQKLVYLDM 232 (384)
Q Consensus 219 ~~~~~~~~L~~L~l 232 (384)
++.+.+|+|..|+=
T Consensus 295 ~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 295 AIRELFPKLLRLDG 308 (585)
T ss_pred HHHHhcchheeecC
Confidence 44455677777643
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.67 E-value=41 Score=31.03 Aligned_cols=109 Identities=17% Similarity=0.054 Sum_probs=56.4
Q ss_pred CcceEEEccCCccccccccc--ccccCCcCeEeCCCCcC---Ccc--cchhhh---hccccceEEEcCCCccccccc---
Q 043452 274 FSLWLLDLSHNSFCGQVSPK--FMNLTQLGWLSLDNNNF---SGR--ISNGFL---SSARSLQVLDISNNKLVGQIP--- 340 (384)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~---~~~--~~~~~~---~~~~~L~~L~l~~~~~~~~~~--- 340 (384)
..+++|.+++|...++.... ....++.+.+++++-.- .+. ....+. ....-++.+.++.|...-..-
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 45778888877766544333 23345677777765422 100 000000 011235667777776542222
Q ss_pred hhhhccCCccEEEccCcccccc----cccccccCCCCceEeCcCCC
Q 043452 341 SWIGNFSSLALLTVSKNLLEGN----IPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~ 382 (384)
-.+.+-+.+..|++++|...+. +|....--.+++.+.++.|.
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 2234455688888888876643 33333333356666666654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.72 E-value=8.5 Score=35.86 Aligned_cols=82 Identities=24% Similarity=0.167 Sum_probs=51.2
Q ss_pred ccCCcCeEeCCCCcCCcc-cchhhhhccccceEEEcCCCccccccchhhh--ccCCccEEEccCcccccccccc---cc-
Q 043452 296 NLTQLGWLSLDNNNFSGR-ISNGFLSSARSLQVLDISNNKLVGQIPSWIG--NFSSLALLTVSKNLLEGNIPVQ---LK- 368 (384)
Q Consensus 296 ~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~- 368 (384)
+.+.+..+.+++|.+-.. ....+....|.|..|+|++|...-.....+. +..-|++|.+.||++.+..... +.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 456778888999876422 1123455668999999999932211222222 3456899999999988642221 22
Q ss_pred ---cCCCCceEe
Q 043452 369 ---NLEALEILD 377 (384)
Q Consensus 369 ---~~~~L~~l~ 377 (384)
.+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 467777664
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=25.39 E-value=53 Score=16.37 Aligned_cols=11 Identities=36% Similarity=0.470 Sum_probs=5.3
Q ss_pred CCeEeccCCcc
Q 043452 153 LKSLDLSHNKL 163 (384)
Q Consensus 153 L~~L~l~~~~~ 163 (384)
|+.|.|.+..+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44555554443
No 92
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=25.11 E-value=92 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=5.2
Q ss_pred CcCeEeCCCCcC
Q 043452 299 QLGWLSLDNNNF 310 (384)
Q Consensus 299 ~L~~l~l~~~~~ 310 (384)
+++--.+.+|.+
T Consensus 197 N~eGA~L~gcNf 208 (302)
T KOG1665|consen 197 NAEGASLKGCNF 208 (302)
T ss_pred ccccccccCcCC
Confidence 334344444444
Done!