Query 043452
Match_columns 384
No_of_seqs 165 out of 2741
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 08:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.7E-43 9.2E-48 343.0 24.0 352 27-384 197-551 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.6E-43 1.2E-47 342.2 24.3 378 2-384 220-717 (768)
3 3t6q_A CD180 antigen; protein- 100.0 8.4E-42 2.9E-46 325.4 30.9 380 1-384 53-536 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-41 1.1E-45 321.2 27.1 374 1-383 52-533 (606)
5 3t6q_A CD180 antigen; protein- 100.0 4.3E-41 1.5E-45 320.5 26.2 375 5-384 33-489 (606)
6 2z63_A TOLL-like receptor 4, v 100.0 6.7E-41 2.3E-45 317.0 26.2 375 1-384 48-531 (570)
7 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-40 1.9E-44 309.2 27.2 373 5-384 26-510 (549)
8 4eco_A Uncharacterized protein 100.0 8.1E-41 2.8E-45 318.6 20.3 326 46-383 198-599 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-39 5.7E-44 309.5 24.7 372 1-384 76-558 (606)
10 4eco_A Uncharacterized protein 100.0 4.7E-40 1.6E-44 313.3 20.6 344 28-382 247-630 (636)
11 3v47_A TOLL-like receptor 5B a 100.0 1.9E-38 6.4E-43 292.0 27.4 352 30-384 30-408 (455)
12 2z63_A TOLL-like receptor 4, v 100.0 2.1E-39 7E-44 306.9 21.4 372 5-384 28-507 (570)
13 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-38 8.7E-43 305.2 27.9 107 2-110 46-152 (680)
14 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-39 4.4E-44 320.2 19.1 110 176-287 266-375 (844)
15 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-38 1.6E-42 303.5 27.5 377 5-384 25-517 (680)
16 4ecn_A Leucine-rich repeat pro 100.0 1E-38 3.5E-43 309.3 22.1 325 46-383 440-839 (876)
17 4ecn_A Leucine-rich repeat pro 100.0 6.8E-38 2.3E-42 303.6 26.6 354 2-369 445-849 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-38 1.3E-42 294.7 22.3 366 5-384 21-481 (520)
19 1o6v_A Internalin A; bacterial 100.0 2.7E-36 9.4E-41 277.8 31.2 344 4-384 45-388 (466)
20 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-37 1.8E-41 301.8 20.5 380 1-384 44-539 (844)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-36 9.1E-41 282.2 24.3 361 8-384 3-457 (520)
22 4fmz_A Internalin; leucine ric 100.0 5.5E-35 1.9E-39 259.2 31.2 307 26-384 40-346 (347)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-36 8.8E-41 284.5 21.9 365 5-384 52-510 (562)
24 1o6v_A Internalin A; bacterial 100.0 7.1E-35 2.4E-39 268.4 30.4 326 1-361 64-389 (466)
25 2id5_A Lingo-1, leucine rich r 100.0 1.2E-35 4.1E-40 274.7 23.4 300 30-383 32-332 (477)
26 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-35 1.3E-39 276.3 27.1 348 1-364 46-514 (549)
27 3v47_A TOLL-like receptor 5B a 100.0 1.8E-35 6.3E-40 272.0 24.1 347 32-384 12-384 (455)
28 2id5_A Lingo-1, leucine rich r 100.0 3.8E-34 1.3E-38 264.7 26.5 301 5-336 32-333 (477)
29 4fmz_A Internalin; leucine ric 100.0 2.9E-33 9.9E-38 248.1 31.0 305 3-360 42-346 (347)
30 3o6n_A APL1; leucine-rich repe 100.0 4.4E-34 1.5E-38 257.3 25.0 308 28-383 43-351 (390)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-34 6.4E-39 271.9 23.5 365 4-384 30-486 (562)
32 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-34 1.5E-38 273.9 25.5 375 6-384 53-580 (635)
33 4g8a_A TOLL-like receptor 4; l 100.0 8.6E-34 3E-38 271.8 26.1 358 1-361 72-581 (635)
34 3oja_B Anopheles plasmodium-re 100.0 6.3E-33 2.2E-37 262.8 25.3 308 28-383 49-357 (597)
35 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-35 5.7E-40 272.8 5.6 380 4-383 2-439 (461)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-32 4.8E-37 251.1 20.2 296 3-337 40-353 (457)
37 1z7x_W Ribonuclease inhibitor; 100.0 3.7E-34 1.3E-38 263.8 7.5 356 29-384 2-411 (461)
38 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-31 2E-35 240.4 26.2 301 24-361 36-353 (457)
39 3o6n_A APL1; leucine-rich repe 100.0 8.1E-31 2.8E-35 236.0 23.6 288 52-384 43-331 (390)
40 1xku_A Decorin; proteoglycan, 100.0 7.7E-30 2.6E-34 224.3 25.5 290 30-382 31-330 (330)
41 1jl5_A Outer protein YOPM; leu 100.0 1.3E-30 4.3E-35 238.1 19.5 178 177-384 216-409 (454)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-30 9.5E-35 227.3 20.1 287 31-381 34-330 (332)
43 3oja_B Anopheles plasmodium-re 100.0 8.9E-30 3.1E-34 241.2 23.6 288 52-384 49-337 (597)
44 3ogk_B Coronatine-insensitive 100.0 1.1E-31 3.8E-36 255.0 9.4 377 3-380 110-547 (592)
45 2p1m_B Transport inhibitor res 100.0 3E-32 1E-36 259.0 4.1 380 3-384 64-519 (594)
46 3ogk_B Coronatine-insensitive 100.0 1.3E-32 4.5E-37 261.4 1.5 381 3-384 71-526 (592)
47 1jl5_A Outer protein YOPM; leu 100.0 1.8E-29 6.1E-34 230.4 19.8 330 4-384 10-370 (454)
48 1xku_A Decorin; proteoglycan, 100.0 9.3E-29 3.2E-33 217.4 22.8 228 146-384 71-306 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-29 1.7E-33 219.3 18.7 265 55-384 34-307 (332)
50 2p1m_B Transport inhibitor res 100.0 2E-31 6.9E-36 253.4 2.8 375 3-381 103-541 (594)
51 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-29 6E-34 219.9 13.8 248 128-382 50-302 (313)
52 2z80_A TOLL-like receptor 2, v 100.0 1.3E-27 4.3E-32 212.2 18.9 247 133-384 36-314 (353)
53 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-28 8.5E-33 212.6 13.9 248 30-334 50-302 (313)
54 2z66_A Variable lymphocyte rec 100.0 8.9E-28 3E-32 208.9 15.3 227 129-383 29-260 (306)
55 3zyi_A Leucine-rich repeat-con 100.0 4.2E-27 1.4E-31 215.7 19.2 247 130-383 56-302 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 4.3E-27 1.5E-31 214.9 18.6 247 130-383 45-291 (440)
57 2z80_A TOLL-like receptor 2, v 99.9 8.4E-27 2.9E-31 206.9 19.4 281 28-363 29-317 (353)
58 2z66_A Variable lymphocyte rec 99.9 4.3E-27 1.5E-31 204.6 14.4 251 33-311 10-261 (306)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-26 6.1E-31 198.6 16.2 225 131-361 14-239 (285)
60 1wwl_A Monocyte differentiatio 99.9 4.2E-27 1.4E-31 204.9 6.7 249 126-384 41-309 (312)
61 4fcg_A Uncharacterized protein 99.9 2.3E-25 8E-30 194.9 17.7 233 128-383 81-313 (328)
62 4fcg_A Uncharacterized protein 99.9 4.8E-25 1.6E-29 193.0 18.9 234 4-261 80-313 (328)
63 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.9E-30 192.9 15.2 251 127-382 31-285 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-26 1.1E-30 199.7 11.2 260 7-332 12-271 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-25 8.9E-30 194.0 15.5 218 148-383 31-249 (317)
66 3zyj_A Leucine-rich repeat-con 99.9 1.2E-24 4E-29 198.8 19.7 226 30-285 64-290 (440)
67 3zyi_A Leucine-rich repeat-con 99.9 1.4E-24 4.9E-29 198.9 20.3 226 30-285 75-301 (452)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-24 9.5E-29 202.1 22.3 265 30-367 40-304 (622)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-23 6E-28 196.7 25.8 258 54-384 40-297 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 5.3E-24 1.8E-28 182.2 15.3 207 151-361 28-238 (276)
71 3oja_A Leucine-rich immune mol 99.9 1.9E-24 6.4E-29 199.2 12.8 237 126-379 32-270 (487)
72 2o6q_A Variable lymphocyte rec 99.9 2.3E-23 8E-28 177.4 18.6 204 151-361 16-219 (270)
73 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.8E-28 193.3 18.1 220 147-384 30-250 (487)
74 3goz_A Leucine-rich repeat-con 99.9 9E-24 3.1E-28 187.8 13.4 252 133-384 3-297 (362)
75 1wwl_A Monocyte differentiatio 99.9 9.5E-25 3.2E-29 190.1 6.6 201 129-337 96-310 (312)
76 2ca6_A RAN GTPase-activating p 99.9 3.1E-24 1.1E-28 192.7 8.8 240 124-363 28-319 (386)
77 2z62_A TOLL-like receptor 4, v 99.9 8.4E-23 2.9E-27 174.7 16.6 205 176-384 28-237 (276)
78 2ast_B S-phase kinase-associat 99.9 5.4E-23 1.8E-27 181.2 14.7 247 129-384 48-306 (336)
79 2ca6_A RAN GTPase-activating p 99.9 6E-24 2E-28 190.8 8.2 240 143-384 24-316 (386)
80 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 172.4 16.4 202 129-336 17-218 (270)
81 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 183.7 11.7 238 128-369 70-315 (336)
82 1p9a_G Platelet glycoprotein I 99.9 6.9E-22 2.4E-26 169.7 17.6 203 147-360 6-208 (290)
83 4glp_A Monocyte differentiatio 99.9 2.1E-22 7.3E-27 175.1 12.6 229 151-384 64-307 (310)
84 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.1E-27 179.5 12.0 262 35-341 3-302 (362)
85 3rfs_A Internalin B, repeat mo 99.9 4.4E-22 1.5E-26 169.7 13.3 179 126-310 39-217 (272)
86 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.3E-26 164.3 16.1 156 226-383 36-191 (251)
87 2xwt_C Thyrotropin receptor; s 99.9 6.9E-22 2.4E-26 165.2 13.7 198 176-382 31-237 (239)
88 1p9a_G Platelet glycoprotein I 99.9 1.1E-21 3.8E-26 168.4 15.0 203 124-336 6-208 (290)
89 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.7E-26 167.9 16.9 195 147-361 37-231 (308)
90 3rfs_A Internalin B, repeat mo 99.9 2.8E-21 9.6E-26 164.7 16.6 215 152-383 20-234 (272)
91 1h6u_A Internalin H; cell adhe 99.9 5.6E-20 1.9E-24 159.4 19.6 194 26-262 37-230 (308)
92 4glp_A Monocyte differentiatio 99.8 1.2E-20 4.2E-25 163.9 15.1 225 30-262 64-307 (310)
93 2xwt_C Thyrotropin receptor; s 99.8 2.2E-20 7.5E-25 156.1 11.4 179 200-384 31-218 (239)
94 3m19_A Variable lymphocyte rec 99.8 2.3E-19 7.9E-24 151.0 15.9 181 151-338 14-194 (251)
95 4fs7_A Uncharacterized protein 99.8 3E-18 1E-22 154.0 18.7 333 20-376 61-393 (394)
96 4ay9_X Follicle-stimulating ho 99.8 7.7E-19 2.6E-23 155.2 14.2 237 133-379 14-254 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.9E-23 143.4 13.7 133 250-383 33-165 (220)
98 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.4E-23 148.5 15.1 190 154-363 27-216 (291)
99 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.2E-23 143.2 13.2 133 249-383 32-164 (220)
100 4ay9_X Follicle-stimulating ho 99.8 6.2E-19 2.1E-23 155.8 10.9 216 154-376 12-231 (350)
101 4ezg_A Putative uncharacterize 99.8 4.4E-18 1.5E-22 137.5 14.8 151 224-384 43-194 (197)
102 2o6s_A Variable lymphocyte rec 99.8 1.3E-18 4.5E-23 142.0 11.5 181 179-372 10-190 (208)
103 2o6s_A Variable lymphocyte rec 99.8 1.9E-18 6.5E-23 141.1 12.3 196 153-366 9-204 (208)
104 1h6t_A Internalin B; cell adhe 99.8 4.1E-18 1.4E-22 146.3 14.9 175 147-339 42-216 (291)
105 2xot_A Amphoterin-induced prot 99.8 1E-18 3.5E-23 155.0 10.6 156 226-383 40-201 (361)
106 3sb4_A Hypothetical leucine ri 99.8 1.7E-18 5.8E-23 151.7 9.7 223 150-378 100-328 (329)
107 4fs7_A Uncharacterized protein 99.8 2.2E-17 7.6E-22 148.3 16.9 319 41-381 58-376 (394)
108 3sb4_A Hypothetical leucine ri 99.8 6.9E-19 2.3E-23 154.2 6.6 287 28-354 23-328 (329)
109 3e6j_A Variable lymphocyte rec 99.8 1.9E-17 6.6E-22 137.0 14.7 155 201-362 20-174 (229)
110 1m9s_A Internalin B; cell inva 99.7 2E-17 7E-22 155.3 15.8 173 147-337 39-211 (605)
111 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6E-22 155.8 15.0 198 153-370 23-220 (605)
112 3cvr_A Invasion plasmid antige 99.7 3.6E-17 1.2E-21 152.0 16.6 188 151-370 59-253 (571)
113 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.9E-22 141.3 11.2 169 176-362 19-187 (263)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 4.8E-17 1.7E-21 133.6 12.1 132 227-360 34-166 (220)
115 3cvr_A Invasion plasmid antige 99.7 1.6E-16 5.6E-21 147.6 17.0 189 129-348 60-255 (571)
116 2v9t_B SLIT homolog 2 protein 99.7 5.7E-17 1.9E-21 133.2 12.1 151 179-335 14-164 (220)
117 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.7E-21 129.3 13.5 154 197-361 41-195 (197)
118 2xot_A Amphoterin-induced prot 99.7 1E-16 3.5E-21 142.2 12.6 176 154-336 21-202 (361)
119 3e6j_A Variable lymphocyte rec 99.7 2.3E-16 7.8E-21 130.5 13.8 152 178-336 21-172 (229)
120 1xeu_A Internalin C; cellular 99.7 3.4E-17 1.2E-21 138.4 8.6 171 149-338 17-187 (263)
121 4gt6_A Cell surface protein; l 99.7 4.8E-15 1.7E-19 133.0 22.0 334 20-383 53-390 (394)
122 4fdw_A Leucine rich hypothetic 99.7 6.7E-16 2.3E-20 138.1 15.9 245 121-381 129-380 (401)
123 4fdw_A Leucine rich hypothetic 99.7 2.8E-15 9.5E-20 134.0 17.2 267 52-360 111-383 (401)
124 2ell_A Acidic leucine-rich nuc 99.7 7.3E-16 2.5E-20 121.1 11.0 133 225-360 24-160 (168)
125 1dce_A Protein (RAB geranylger 99.6 2.7E-18 9.2E-23 160.3 -5.0 204 148-378 346-567 (567)
126 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 117.1 10.5 128 249-380 17-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 119.7 10.8 135 247-384 22-160 (168)
128 4gt6_A Cell surface protein; l 99.6 2.8E-14 9.5E-19 128.1 20.7 314 42-382 51-368 (394)
129 1w8a_A SLIT protein; signaling 99.6 1.6E-15 5.5E-20 121.8 10.9 130 228-361 11-140 (192)
130 2je0_A Acidic leucine-rich nuc 99.6 1.9E-15 6.5E-20 116.2 10.2 130 224-356 16-149 (149)
131 2o6r_A Variable lymphocyte rec 99.6 6E-15 2E-19 116.9 11.9 130 227-361 9-138 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 6.8E-15 2.3E-19 118.1 11.5 127 228-360 13-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.6 7.1E-15 2.4E-19 116.3 10.0 130 224-359 18-152 (176)
134 1dce_A Protein (RAB geranylger 99.6 1E-16 3.4E-21 149.8 -1.1 179 197-384 346-546 (567)
135 1w8a_A SLIT protein; signaling 99.6 1.7E-14 5.7E-19 115.8 11.1 131 202-338 10-141 (192)
136 3un9_A NLR family member X1; l 99.6 2.1E-15 7.1E-20 133.6 5.0 185 199-383 71-282 (372)
137 3un9_A NLR family member X1; l 99.5 7.8E-15 2.7E-19 129.9 4.4 185 176-360 72-283 (372)
138 2o6r_A Variable lymphocyte rec 99.5 2E-13 6.8E-18 108.1 11.9 134 201-340 8-141 (177)
139 4b8c_D Glucose-repressible alc 99.5 8.6E-15 2.9E-19 141.0 4.7 191 128-333 173-369 (727)
140 4h09_A Hypothetical leucine ri 99.5 2.8E-12 9.7E-17 114.5 20.4 125 26-160 42-167 (379)
141 2wfh_A SLIT homolog 2 protein 99.5 2.6E-13 8.9E-18 108.8 12.1 127 203-336 13-139 (193)
142 1ds9_A Outer arm dynein; leuci 99.5 1.2E-15 4.2E-20 123.2 -1.7 107 224-336 47-153 (198)
143 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-13 6.1E-18 108.2 10.9 130 246-382 16-151 (176)
144 4b8c_D Glucose-repressible alc 99.5 2.6E-14 8.7E-19 137.7 5.2 143 193-341 217-359 (727)
145 4h09_A Hypothetical leucine ri 99.5 5.4E-12 1.9E-16 112.6 19.8 307 48-374 40-359 (379)
146 3g39_A Variable lymphocyte rec 99.4 1.2E-12 3.9E-17 102.7 10.0 106 251-361 11-116 (170)
147 1ds9_A Outer arm dynein; leuci 99.4 2.9E-14 1E-18 115.1 -0.2 131 244-383 43-184 (198)
148 2r9u_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 100.4 10.2 105 252-361 15-119 (174)
149 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 97.2 9.7 106 226-336 10-115 (170)
150 2r9u_A Variable lymphocyte rec 99.3 2.1E-11 7.1E-16 95.9 9.5 105 227-336 14-118 (174)
151 2ra8_A Uncharacterized protein 99.2 1.3E-10 4.5E-15 101.9 11.6 71 297-367 251-327 (362)
152 2ra8_A Uncharacterized protein 99.1 2.6E-10 8.9E-15 100.1 11.2 138 243-384 166-320 (362)
153 2ifg_A High affinity nerve gro 99.1 2.3E-10 7.9E-15 100.7 9.6 89 270-360 27-116 (347)
154 1io0_A Tropomodulin; LRR prote 98.9 1.1E-09 3.9E-14 86.8 5.5 119 242-360 29-164 (185)
155 3e4g_A ATP synthase subunit S, 98.9 9.7E-10 3.3E-14 84.8 4.6 102 274-375 61-171 (176)
156 3e4g_A ATP synthase subunit S, 98.9 6.9E-10 2.3E-14 85.7 3.5 85 297-382 60-150 (176)
157 2ifg_A High affinity nerve gro 98.9 4.9E-09 1.7E-13 92.2 9.3 102 9-115 12-115 (347)
158 1io0_A Tropomodulin; LRR prote 98.7 9.1E-09 3.1E-13 81.5 5.3 113 224-336 35-164 (185)
159 3rw6_A Nuclear RNA export fact 98.3 3.3E-07 1.1E-11 76.3 3.8 80 296-377 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.1 5.9E-06 2E-10 68.7 6.9 83 271-354 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 1.5E-05 5.1E-10 62.7 5.9 117 243-359 35-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 1.7E-05 5.6E-10 62.4 4.9 112 224-335 40-169 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0025 8.7E-08 46.6 5.6 56 302-360 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.017 6E-07 42.0 5.6 57 33-91 11-68 (130)
165 2lz0_A Uncharacterized protein 91.7 0.17 5.8E-06 34.7 3.7 48 308-357 6-53 (100)
166 2lz0_A Uncharacterized protein 87.1 0.71 2.4E-05 31.5 4.0 42 45-87 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-43 Score=343.00 Aligned_cols=352 Identities=32% Similarity=0.431 Sum_probs=263.5
Q ss_pred hccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452 27 CELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE 106 (384)
Q Consensus 27 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 106 (384)
..+++|++|++++|.+.+..|. ++++++|++|++++|.+++..|..+.++++|++|++++|.+++..+.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCC
Confidence 3445555555555555543333 555566666666666555555555666666666666666555443221 555666
Q ss_pred hhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452 107 FFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185 (384)
Q Consensus 107 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (384)
+|+++.+.............+++|++|++++|.+.+ .+..+..+++|++|++++|.+++.+|...+..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 666655443322222222334788888888887765 6677888888888888888887777777667888888888888
Q ss_pred CCCcCcccccCcccc-CCceEeeecCccCCCcchhHHH-hccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccc
Q 043452 186 NSFTGSLQLSNSKLD-FLHHLDISSNSFTGRLPQNMST-ILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG 263 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 263 (384)
|.+.+..+..+..++ +|++|++++|.+.+..+..+.. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 887766666677776 8888888888877655555432 15679999999998887788888899999999999999875
Q ss_pred ccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhh
Q 043452 264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI 343 (384)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 343 (384)
..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.++. .+..+++|+.|++++|.+.+..|.++
T Consensus 433 ~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 433 TIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp CCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccc-HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHH
Confidence 444 4456789999999999999988898999999999999999999866554 46778999999999999999999999
Q ss_pred hccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 344 GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 344 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
..+++|+.|++++|++++..|..+..+++|+.|++++|+++
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 99999999999999999999999999999999999999863
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-43 Score=342.16 Aligned_cols=378 Identities=31% Similarity=0.465 Sum_probs=261.7
Q ss_pred CCCccccEEeCcCcccccccchhhhhccccccEEecCCCc----------------------cccCCchhhhc-CCCCCE
Q 043452 2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNA----------------------IEGPLPQCLKN-LTRLKV 58 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~~~~~~~~l~~-~~~L~~ 58 (384)
..+++|++|++++|.+++.+ +..+..+++|++|++++|. +.+.+|..+.. +++|++
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~ 298 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSE
T ss_pred ccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCE
Confidence 34455555555555554333 3444444444444444443 33344444444 366666
Q ss_pred EEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceee-------------------
Q 043452 59 FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV------------------- 119 (384)
Q Consensus 59 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~------------------- 119 (384)
|++++|.+++..|..+.++++|++|++++|.+++..+...+.++++|++|+++.+......
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC
Confidence 7776666666666667777777777777776665555444666666776666554322110
Q ss_pred -----ccCCCCC--CCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc
Q 043452 120 -----ETENWLP--TSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS 191 (384)
Q Consensus 120 -----~~~~~~~--~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 191 (384)
....+.. +++|++|++++|.+.+ ++..+..+++|+.|++++|.+++.+|..+ ..+++|++|++++|.+.+.
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSC
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCc
Confidence 0111111 4567777777776664 66677778888888888887765555443 5778888888888888777
Q ss_pred ccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhc
Q 043452 192 LQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271 (384)
Q Consensus 192 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 271 (384)
.+..+..+++|++|++++|.+.+..+..+.. +++|++|++++|++++..+.++..+++|++|++++|.+.+..+. .+.
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~ 535 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELG 535 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGG
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHc
Confidence 7777778888888888888887666665544 78888888888888877788888888888888888888755443 345
Q ss_pred cCCcceEEEccCCccccccccc----------------------------------------------------------
Q 043452 272 GCFSLWLLDLSHNSFCGQVSPK---------------------------------------------------------- 293 (384)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~---------------------------------------------------------- 293 (384)
.+++|++|++++|.+.+..|..
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 6888888888888776544432
Q ss_pred ------------ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 294 ------------FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 294 ------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+..++.|+.|++++|.+++.++.. +..++.|+.|++++|.+++.+|..+.++++|+.|++++|++++
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 223466788888888888666654 5667888999999998888888888889999999999999888
Q ss_pred ccccccccCCCCceEeCcCCCCC
Q 043452 362 NIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 362 ~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
.+|..+..+++|+.|++++|+++
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEE
T ss_pred cCChHHhCCCCCCEEECcCCccc
Confidence 88888888999999999988764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.4e-42 Score=325.35 Aligned_cols=380 Identities=20% Similarity=0.149 Sum_probs=240.0
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 80 (384)
|+++++|++|++++|.+. .+.+..|+.+++|++|++++|.+.+..|..++.+++|++|++++|.++...+..+.++++|
T Consensus 53 ~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp STTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred hccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 466778888888888776 5556777888888888888887776667777777888888887777775556667777777
Q ss_pred cEEECCCCccccccccccCCCCCchhhhhhhcccCcee------------------------------------------
Q 043452 81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE------------------------------------------ 118 (384)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~------------------------------------------ 118 (384)
++|++++|.+.+... ..+..+++|++|+++.+.....
T Consensus 132 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 210 (606)
T 3t6q_A 132 ESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210 (606)
T ss_dssp CEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred cEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence 777777776655322 1222245555554433221100
Q ss_pred ----------------------------------------------------------eccCCCCCCCCccEEEccCCCC
Q 043452 119 ----------------------------------------------------------VETENWLPTSQLKVLHLRNCNL 140 (384)
Q Consensus 119 ----------------------------------------------------------~~~~~~~~~~~L~~L~l~~~~~ 140 (384)
.....+..+++|++|+++++.+
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 0011244456666666666666
Q ss_pred CCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc-ccccCccccCCceEeeecCccCCCcc-h
Q 043452 141 NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS-LQLSNSKLDFLHHLDISSNSFTGRLP-Q 218 (384)
Q Consensus 141 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 218 (384)
..++..+..+++|+.|++++|.+. ..+...+..+++|++|++++|.+... ....+..+++|++|++++|.+.+... .
T Consensus 291 ~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 291 SELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp SCCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred CCCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 666666666667777777766665 33333345666667776666655532 23345666777777777766653220 2
Q ss_pred hHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccC
Q 043452 219 NMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLT 298 (384)
Q Consensus 219 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (384)
.....+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..++
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 22233667777777777666555566666777777777777766444444456677777777777777666666666677
Q ss_pred CcCeEeCCCCcCCccc--chhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452 299 QLGWLSLDNNNFSGRI--SNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376 (384)
Q Consensus 299 ~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 376 (384)
+|++|++++|.+++.. ....+..+++|+.|++++|.+++..|.++.++++|+.|++++|++++..|..+.++++| .|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 7777777777765321 11335556677777777777666666666777777777777777766666666666666 66
Q ss_pred eCcCCCCC
Q 043452 377 DVSENNLS 384 (384)
Q Consensus 377 ~l~~~~~s 384 (384)
++++|+++
T Consensus 529 ~L~~N~l~ 536 (606)
T 3t6q_A 529 NLASNHIS 536 (606)
T ss_dssp ECCSSCCC
T ss_pred ECcCCccc
Confidence 66666653
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-41 Score=321.25 Aligned_cols=374 Identities=24% Similarity=0.241 Sum_probs=211.1
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 80 (384)
|+++++|++|++++|.++ .+++..|.++++|++|++++|.+.+..|..++++++|++|++++|.+....+..+.++++|
T Consensus 52 ~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred ccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 456777888888877776 5556677777788888888777776667777777777777777777775555667777777
Q ss_pred cEEECCCCccccccccccCCCCCchhhhhhhcccCceeec--------------------------cCCCCCCCCccEEE
Q 043452 81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE--------------------------TENWLPTSQLKVLH 134 (384)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------------------------~~~~~~~~~L~~L~ 134 (384)
++|++++|.+.+......+.++++|++|+++.+....... ........+|++|+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 7777777776653323456677777777666543221100 00001111344444
Q ss_pred ccCC----------------------------------------------------------------------------
Q 043452 135 LRNC---------------------------------------------------------------------------- 138 (384)
Q Consensus 135 l~~~---------------------------------------------------------------------------- 138 (384)
++++
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 4333
Q ss_pred -----CCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452 139 -----NLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213 (384)
Q Consensus 139 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (384)
.+..++ .+..+++|+.|++++|.+ +.+|. + .+++|++|++++|..... ..+..+++|++|++++|.+.
T Consensus 291 ~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 291 SLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEE
T ss_pred EecCccchhhh-hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccC
Confidence 332222 334445555566665555 34442 1 555566666555533221 13445666777777776665
Q ss_pred CCc-chhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccc
Q 043452 214 GRL-PQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP 292 (384)
Q Consensus 214 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 292 (384)
+.. .......+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+...+.++++|++|++++|.+.+..+.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 221 12223346667777777766553 3345555666666666666655433334445556666666666655555555
Q ss_pred cccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCC
Q 043452 293 KFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372 (384)
Q Consensus 293 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 372 (384)
.+..+++|++|++++|.+++...+..+..+++|++|++++|.+++..|.++.++++|+.|++++|++++..|..|..+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 55555555555555555543223333444455555555555555444555555555555555555555555555555555
Q ss_pred CceEeCcCCCC
Q 043452 373 LEILDVSENNL 383 (384)
Q Consensus 373 L~~l~l~~~~~ 383 (384)
|+.|++++|+|
T Consensus 523 L~~L~l~~N~l 533 (606)
T 3vq2_A 523 LSTLDCSFNRI 533 (606)
T ss_dssp CCEEECTTSCC
T ss_pred CCEEECCCCcC
Confidence 55555555554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-41 Score=320.49 Aligned_cols=375 Identities=22% Similarity=0.226 Sum_probs=249.0
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 84 (384)
+.+++|++++|.++ .+++..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+....|..+.++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 46899999999998 67678899999999999999999988889999999999999999999988899999999999999
Q ss_pred CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCc-cccccccCCCC--eEeccCC
Q 043452 85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT-LGFLQKQHDLK--SLDLSHN 161 (384)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~--~L~l~~~ 161 (384)
+++|.+++..+ ..+.++++|++|+++.+....... ..+..+++|++|+++++.+..+ +..+..+++|+ .|++++|
T Consensus 112 L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred ccccCcccCCc-chhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 99999987533 458899999999999876543222 3344488999999999988873 55677778887 7777777
Q ss_pred ccCCCcH-------------------------------------------------------------------------
Q 043452 162 KLVGSFP------------------------------------------------------------------------- 168 (384)
Q Consensus 162 ~~~~~~~------------------------------------------------------------------------- 168 (384)
.+.+..+
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 6542211
Q ss_pred -HHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCcc-chhcc
Q 043452 169 -AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI-SSSIS 246 (384)
Q Consensus 169 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~ 246 (384)
...++.+++|++|++++|.++ ..+..+..+++|++|++++|.+.+..+.. ...+++|++|++++|.+.... ...+.
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhh
Confidence 111233344444444444444 22233444445555555555444221222 222445555555555444222 22344
Q ss_pred CCCCCcEEEeeccccccccc-cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452 247 EMKDLRFLDLSRNQFSGELS-APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325 (384)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 325 (384)
.+++|++|++++|.+.+... ...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+...+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 55555555555555542211 22344566666666666666655556666666677777766666544444445566677
Q ss_pred eEEEcCCCccccccchhhhccCCccEEEccCcccccc---cccccccCCCCceEeCcCCCCC
Q 043452 326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN---IPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 326 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|++++|.+.+..+..+.++++|+.|++++|++.+. .+..+..+++|+.|++++|.++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 7777777777666666677777777777777776652 2244667777777777777664
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-41 Score=317.01 Aligned_cols=375 Identities=22% Similarity=0.249 Sum_probs=265.7
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 80 (384)
|.++++|++|++++|.++ .+++..|+++++|++|++++|.+.+..+.+|..+++|++|+++++.++...+..+.++++|
T Consensus 48 ~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 456777777777777776 5556667777777777777777765555667777777777777776664444456666777
Q ss_pred cEEECCCCccccccccccCCCCCchhhhhhhcccCceee-----------------------------------------
Q 043452 81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV----------------------------------------- 119 (384)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------------------------------------- 119 (384)
++|++++|.+++......+.++++|++|+++.+......
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 777777666654322244556666666666544321100
Q ss_pred -------------------------------------------------------------------ccCCCCCCCCccE
Q 043452 120 -------------------------------------------------------------------ETENWLPTSQLKV 132 (384)
Q Consensus 120 -------------------------------------------------------------------~~~~~~~~~~L~~ 132 (384)
....+..+++|+.
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 0111223344455
Q ss_pred EEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCcc
Q 043452 133 LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212 (384)
Q Consensus 133 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 212 (384)
|+++++.+..++..+..+ +|+.|++++|.+. .++. ..+++|++|+++++........ ..+++|++|++++|.+
T Consensus 287 L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 287 FSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL 359 (570)
T ss_dssp EEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred EEecCccchhhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence 555554444444444444 5555555555544 3332 2456666666666655433322 5778899999999988
Q ss_pred CCCcc-hhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc
Q 043452 213 TGRLP-QNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS 291 (384)
Q Consensus 213 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (384)
..... ......+++|++|++++|.+....+. +..+++|++|++++|.+.+..+...+.++++|++|++++|.+.+..+
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred CccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 73321 23344589999999999988755444 88899999999999998755555677889999999999999998888
Q ss_pred ccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCC
Q 043452 292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLE 371 (384)
Q Consensus 292 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 371 (384)
..+..+++|++|++++|.+++...+..+..+++|++|++++|.+++..|.++..+++|+.|++++|++++..+..|.+++
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 88999999999999999987333335577789999999999999988899999999999999999999988888899999
Q ss_pred CCceEeCcCCCCC
Q 043452 372 ALEILDVSENNLS 384 (384)
Q Consensus 372 ~L~~l~l~~~~~s 384 (384)
+|+.+++++|+++
T Consensus 519 ~L~~L~l~~N~~~ 531 (570)
T 2z63_A 519 SLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCcEEEecCCccc
Confidence 9999999999985
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-40 Score=309.21 Aligned_cols=373 Identities=22% Similarity=0.259 Sum_probs=290.5
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 84 (384)
++|++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+..+..+.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 57999999999987 56577899999999999999999977778899999999999999999977777799999999999
Q ss_pred CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCcc
Q 043452 85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKL 163 (384)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 163 (384)
+++|.+++......+.++++|++|+++.+..........+..+++|++|+++++.+.+ .+..+..+++|+.|+++++..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 9999988654445788999999999998775555666678889999999999998877 667788888888888888776
Q ss_pred CCCcHHHHhhhCCCccEEEcCCCCCcCccc---cc---------------------------------------------
Q 043452 164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQ---LS--------------------------------------------- 195 (384)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~--------------------------------------------- 195 (384)
. .++..++..+++|++|++++|.+.+... ..
T Consensus 185 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp T-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred c-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 5 6676666677888888888776654210 00
Q ss_pred -------------C-----------------------------ccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc
Q 043452 196 -------------N-----------------------------SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS 233 (384)
Q Consensus 196 -------------~-----------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 233 (384)
+ ...++|+.+++++|.+. .++..++..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 0 01134666666666665 5677776678999999999
Q ss_pred CCcCCCccc---hhccCCCCCcEEEeeccccccccc-cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCc
Q 043452 234 KNKFEGSIS---SSISEMKDLRFLDLSRNQFSGELS-APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN 309 (384)
Q Consensus 234 ~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 309 (384)
+|.+++..+ ..+..+++|++|++++|.+.+... ...+..+++|++|++++|.+. ..|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 998876543 235678899999999998863221 245677889999999998887 455566667777777777777
Q ss_pred CCcccchhh-----------------hhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCC
Q 043452 310 FSGRISNGF-----------------LSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372 (384)
Q Consensus 310 ~~~~~~~~~-----------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 372 (384)
++ .++..+ ...+++|++|++++|.++ .+|. ...+++|+.|++++|++++..+..+..+++
T Consensus 422 l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 422 IR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp CS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred cc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 65 222211 125678899999999887 5565 467899999999999999888888999999
Q ss_pred CceEeCcCCCCC
Q 043452 373 LEILDVSENNLS 384 (384)
Q Consensus 373 L~~l~l~~~~~s 384 (384)
|+.|++++|+++
T Consensus 499 L~~L~l~~N~~~ 510 (549)
T 2z81_A 499 LQKIWLHTNPWD 510 (549)
T ss_dssp CCEEECCSSCBC
T ss_pred cCEEEecCCCcc
Confidence 999999999975
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-41 Score=318.58 Aligned_cols=326 Identities=19% Similarity=0.249 Sum_probs=159.4
Q ss_pred CchhhhcCCCCCEEEeecCcccCc-----------------cCcccc--CCCCccEEECCCCccccccccccCCCCCchh
Q 043452 46 LPQCLKNLTRLKVFGISSNQLSGS-----------------LPSVIA--SLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE 106 (384)
Q Consensus 46 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 106 (384)
+|..++++++|++|+++++.+++. .|..+. ++++|++|++++|.+.+..+ ..+.++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCC
Confidence 444555556666666666555542 555555 56666666666555554433 4455555566
Q ss_pred hhhhhccc-CceeeccCCCCC------CCCccEEEccCCCCCCccc--cccccCCCCeEeccCCccCCCcHHHHhhhCCC
Q 043452 107 FFMLSLVN-NTLEVETENWLP------TSQLKVLHLRNCNLNGTLG--FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177 (384)
Q Consensus 107 ~l~l~~~~-~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 177 (384)
+|+++.+. ......+..+.. +++|++|+++++.+..++. .+..+++|+.|++++|.+.+.+| .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCC
Confidence 55555544 221011222222 2455555555555555444 45555555555555555544444 2334455
Q ss_pred ccEEEcCCCCCcCcccccCccccC-CceEeeecCccCCCcchhHHH--------------------------------hc
Q 043452 178 LEVLRLTNNSFTGSLQLSNSKLDF-LHHLDISSNSFTGRLPQNMST--------------------------------IL 224 (384)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~--------------------------------~~ 224 (384)
|++|++++|.+. ..+..+..+++ |++|++++|.+. .++..+.. .+
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 555555555444 33333444444 555555555444 33332211 12
Q ss_pred cCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCC-------cceEEEccCCccccccccccc--
Q 043452 225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF-------SLWLLDLSHNSFCGQVSPKFM-- 295 (384)
Q Consensus 225 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~-- 295 (384)
++|++|++++|.++......+..+++|+.|++++|.+. ..+...+.... +|++|++++|.+. ..|..+.
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 510 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT 510 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc
Confidence 34555555555554333333334455555555555554 33333332221 5555555555555 3333333
Q ss_pred ccCCcCeEeCCCCcCCcccchhhhhccccceEEEc------CCCccccccchhhhccCCccEEEccCccccccccccccc
Q 043452 296 NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI------SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN 369 (384)
Q Consensus 296 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 369 (384)
.+++|+.|++++|.+++ ++.. +..+++|+.|++ ++|.+.+.+|..+..+++|+.|++++|++. .+|..+.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~- 586 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT- 586 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC-
T ss_pred cCCCcCEEECCCCCCCC-cChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh-
Confidence 55555555555555553 3332 234455555555 234444455555555555555666555553 3444432
Q ss_pred CCCCceEeCcCCCC
Q 043452 370 LEALEILDVSENNL 383 (384)
Q Consensus 370 ~~~L~~l~l~~~~~ 383 (384)
++|+.|++++|++
T Consensus 587 -~~L~~L~Ls~N~l 599 (636)
T 4eco_A 587 -PNISVLDIKDNPN 599 (636)
T ss_dssp -TTCCEEECCSCTT
T ss_pred -CcCCEEECcCCCC
Confidence 5556666665554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-39 Score=309.50 Aligned_cols=372 Identities=26% Similarity=0.267 Sum_probs=300.5
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccC-ccCccccCCCC
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG-SLPSVIASLTS 79 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 79 (384)
|.++++|++|++++|.++ .+++..|+.+++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..|..+.++++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred hhchhhcCEeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 567899999999999997 5667889999999999999999986666789999999999999999885 46889999999
Q ss_pred ccEEECCCCccccccccccCCC---------------------------CCchhhhhhhcccCce---------------
Q 043452 80 LQYLDLSDNYFQGIFYLSSLGN---------------------------HSNLEFFMLSLVNNTL--------------- 117 (384)
Q Consensus 80 L~~L~l~~~~~~~~~~~~~~~~---------------------------~~~L~~l~l~~~~~~~--------------- 117 (384)
|++|++++|.+++..+ ..+.. ..+|+.++++.+....
T Consensus 155 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITV-NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp CCEEECCSSCCCEECT-TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred CCEEEccCCcceecCh-hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 9999999988765432 11111 1144444443332110
Q ss_pred ---------------------------------------------------------------eeccCCCCCCCCccEEE
Q 043452 118 ---------------------------------------------------------------EVETENWLPTSQLKVLH 134 (384)
Q Consensus 118 ---------------------------------------------------------------~~~~~~~~~~~~L~~L~ 134 (384)
......+..+++|++|+
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~ 313 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEE
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEE
Confidence 00011455667999999
Q ss_pred ccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc--cccCccccCCceEeeecCcc
Q 043452 135 LRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL--QLSNSKLDFLHHLDISSNSF 212 (384)
Q Consensus 135 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~ 212 (384)
+++|.+..++. + .+++|+.|++++|...+.. .+..+++|++|++++|.+.... +..+..+++|++|++++|.+
T Consensus 314 l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 314 IIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp EESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred cccccCccccc-C-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence 99999966774 4 9999999999999654344 2458899999999999887553 56677899999999999998
Q ss_pred CCCcchhHHHhccCCcEEEccCCcCCCccc-hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc-cc
Q 043452 213 TGRLPQNMSTILQKLVYLDMSKNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG-QV 290 (384)
Q Consensus 213 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~ 290 (384)
. ..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .....+.++++|++|++++|.+.+ ..
T Consensus 389 ~-~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 389 I-IMSANF-MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp E-EECCCC-TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred c-cchhhc-cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-cchhhhcCCCCCCEEECCCCcCCCcch
Confidence 7 455444 348999999999999987665 678899999999999999874 344556789999999999999987 46
Q ss_pred cccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452 291 SPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL 370 (384)
Q Consensus 291 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 370 (384)
+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..|.++.++++|+.|++++|+++ ..|..+..+
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred HHhhccCCCCCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 888899999999999999998 444455778899999999999999888999999999999999999998 566669899
Q ss_pred C-CCceEeCcCCCCC
Q 043452 371 E-ALEILDVSENNLS 384 (384)
Q Consensus 371 ~-~L~~l~l~~~~~s 384 (384)
+ +|+.+++++|+|+
T Consensus 544 ~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTCCEEECCSCCCC
T ss_pred cccCcEEEccCCCcc
Confidence 8 5999999999984
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-40 Score=313.32 Aligned_cols=344 Identities=19% Similarity=0.214 Sum_probs=242.8
Q ss_pred ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCc-ccC-ccCccccCC------CCccEEECCCCcccccccc-cc
Q 043452 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ-LSG-SLPSVIASL------TSLQYLDLSDNYFQGIFYL-SS 98 (384)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~-~~ 98 (384)
++++|++|++++|.+.+.+|..++++++|++|++++|. +++ ..|..+.++ ++|++|++++|.++ ..+. ..
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 55555555555555544555555555555555555554 443 344444433 55555555555554 2221 14
Q ss_pred CCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCC-CCeEeccCCccCCCcHHHHhh-hCC
Q 043452 99 LGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHD-LKSLDLSHNKLVGSFPAWLLQ-HNT 176 (384)
Q Consensus 99 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~ 176 (384)
+.++++|++|+++.+....... .+..+++|++|+++++.+..++..+..+++ |+.|++++|.++ .+|..+.. .++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 6667777777777655443333 666777788888887777777777788888 888888888877 66653321 134
Q ss_pred CccEEEcCCCCCcCcccccCc-------cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCC-
Q 043452 177 KLEVLRLTNNSFTGSLQLSNS-------KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEM- 248 (384)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~- 248 (384)
+|++|++++|.+....+..+. .+++|++|++++|.+. .++..++..+++|++|++++|.++......+...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 788999998888877666666 7789999999999998 8888888889999999999999984433333322
Q ss_pred ------CCCcEEEeeccccccccccchh-ccCCcceEEEccCCcccccccccccccCCcCeEeCC------CCcCCcccc
Q 043452 249 ------KDLRFLDLSRNQFSGELSAPLL-TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD------NNNFSGRIS 315 (384)
Q Consensus 249 ------~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~------~~~~~~~~~ 315 (384)
++|+.|++++|.+. ..+..++ ..+++|++|++++|.+.+ .|..+..+++|++|+++ +|.+.+.++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 39999999999998 5665554 479999999999999997 78888899999999994 566665555
Q ss_pred hhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccc-----c---cCCCCceEeCcCCC
Q 043452 316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL-----K---NLEALEILDVSENN 382 (384)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~---~~~~L~~l~l~~~~ 382 (384)
.. +..+++|++|++++|.+. .+|..+. ++|+.|++++|++.......+ . .+...+..++.+|+
T Consensus 560 ~~-l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 560 EG-ITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp TT-GGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred HH-HhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 44 566899999999999995 6777654 899999999999876543332 2 22234556777775
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-38 Score=291.98 Aligned_cols=352 Identities=21% Similarity=0.229 Sum_probs=262.5
Q ss_pred ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccC-ccCccccCCCCccEEECCCCccccccccccCCCCCchhhh
Q 043452 30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG-SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 108 (384)
++|++|+++++.+.+..+..++++++|++|+++++.+.. ..+..+.++++|++|++++|.+++..+ ..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence 456666666666665555566666666666666665542 234456666666666666666554322 345556666666
Q ss_pred hhhcccCcee-eccCCCCCCCCccEEEccCCCCCCc-ccc-ccccCCCCeEeccCCccCCCcHHHHhh-hCCCccEEEcC
Q 043452 109 MLSLVNNTLE-VETENWLPTSQLKVLHLRNCNLNGT-LGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQ-HNTKLEVLRLT 184 (384)
Q Consensus 109 ~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~ 184 (384)
+++.+..... .....+..+++|++|+++++.+.+. +.. +..+++|++|++++|.+.+..+..+.. ..++++.++++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 6665544321 2234477788999999999998885 433 889999999999999887555544322 22789999999
Q ss_pred CCCCcCccccc--------CccccCCceEeeecCccCCCcchhHHHhc--cCCcEEEccCCcCCCc----------cchh
Q 043452 185 NNSFTGSLQLS--------NSKLDFLHHLDISSNSFTGRLPQNMSTIL--QKLVYLDMSKNKFEGS----------ISSS 244 (384)
Q Consensus 185 ~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~----------~~~~ 244 (384)
++.+....... +..+++|++|++++|.+.+..+..+.... ++|+.|++++|...+. ....
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 99887654433 33568899999999999866666665532 7899999998854321 1111
Q ss_pred cc--CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452 245 IS--EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA 322 (384)
Q Consensus 245 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 322 (384)
+. ..++|+++++++|.+. ......+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+.+..+..+
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 346 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENL 346 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTC
T ss_pred cccccccCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCc
Confidence 11 2368999999999998 445556778999999999999999888889999999999999999997 5555667788
Q ss_pred ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|++|++++|.+.+..|.++.++++|+.|++++|++++..+..+..+++|+.|++++|+|+
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 99999999999999888999999999999999999999877777899999999999999985
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=306.85 Aligned_cols=372 Identities=22% Similarity=0.274 Sum_probs=272.3
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 84 (384)
+++++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+|+++++|++|+++++.++...+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46899999999997 67677899999999999999999877778899999999999999999877778999999999999
Q ss_pred CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCc-cccccccCCC----CeEecc
Q 043452 85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT-LGFLQKQHDL----KSLDLS 159 (384)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L----~~L~l~ 159 (384)
+++|.+++... ..+.++++|++|+++.+.......+..+..+++|++|+++++.+..+ +..+..+++| +.++++
T Consensus 107 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 99999887643 34889999999999987655434456688899999999999988773 4556666666 667776
Q ss_pred CCccCCCcHH----------------------------------------------------------------------
Q 043452 160 HNKLVGSFPA---------------------------------------------------------------------- 169 (384)
Q Consensus 160 ~~~~~~~~~~---------------------------------------------------------------------- 169 (384)
+|.+.+..+.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 6654311111
Q ss_pred ----------HHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHH------------------
Q 043452 170 ----------WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMS------------------ 221 (384)
Q Consensus 170 ----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------ 221 (384)
..+..+++|++|+++++.+.. .+..+..+ +|++|++++|.+. .++....
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccc
Confidence 112334566666666665542 22233333 4455555444443 2222100
Q ss_pred -HhccCCcEEEccCCcCCCcc--chhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc-cccccc
Q 043452 222 -TILQKLVYLDMSKNKFEGSI--SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS-PKFMNL 297 (384)
Q Consensus 222 -~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 297 (384)
..+++|++|++++|.++... +..+..+++|++|++++|.+.+ .+.. +..+++|++|++++|.+.+..+ ..+..+
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence 23556666666666665332 4556667777777777777653 2333 5667888888888887776544 456778
Q ss_pred CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc-cccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV-GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376 (384)
Q Consensus 298 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 376 (384)
++|++|++++|.+. ...+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..|..|..+++|+.|
T Consensus 421 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 88888888888887 334455667789999999999887 4678888899999999999999988778888899999999
Q ss_pred eCcCCCCC
Q 043452 377 DVSENNLS 384 (384)
Q Consensus 377 ~l~~~~~s 384 (384)
++++|.++
T Consensus 500 ~l~~n~l~ 507 (570)
T 2z63_A 500 NMASNQLK 507 (570)
T ss_dssp ECCSSCCS
T ss_pred eCCCCcCC
Confidence 99999874
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-38 Score=305.24 Aligned_cols=107 Identities=23% Similarity=0.260 Sum_probs=58.2
Q ss_pred CCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452 2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 81 (384)
.++++|++|++++|.++ .+.+..++++++|++|++++|.+.+..+.+|+.+++|++|++++|.+....+..+.++++|+
T Consensus 46 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred hCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 44566666666666665 34455566666666666666666543333455666666666666655544445555555666
Q ss_pred EEECCCCccccccccccCCCCCchhhhhh
Q 043452 82 YLDLSDNYFQGIFYLSSLGNHSNLEFFML 110 (384)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 110 (384)
+|++++|.+++..+ ..+.++++|++|++
T Consensus 125 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 125 TLDLSHNGLSSTKL-GTQVQLENLQELLL 152 (680)
T ss_dssp EEECCSSCCSCCCC-CSSSCCTTCCEEEC
T ss_pred EEECCCCcccccCc-hhhcccccCCEEEc
Confidence 66665555544321 23334444444443
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=320.25 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=57.9
Q ss_pred CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD 255 (384)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 255 (384)
++|+.|++++|.+....+..+..+++|+.|++++|.+. ......+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 45556666655555544555555666666666666555 22222223355566666666655544455555555555555
Q ss_pred eeccccccccccchhccCCcceEEEccCCccc
Q 043452 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC 287 (384)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (384)
+++|.+. ..+...+.++++|++|++++|.+.
T Consensus 345 L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 345 LQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCSCCCC-CCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCCC-ccChhhhcCCCCCCEEECCCCCCC
Confidence 5555554 233333444555555555555443
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-38 Score=303.45 Aligned_cols=377 Identities=25% Similarity=0.251 Sum_probs=242.4
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 84 (384)
+++++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+++++++|++|++++|.++...+..+.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47899999999887 66677889999999999999998877788899999999999999988865556788999999999
Q ss_pred CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccc-cc--cccCCCCeEeccCC
Q 043452 85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG-FL--QKQHDLKSLDLSHN 161 (384)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~--~~~~~L~~L~l~~~ 161 (384)
+++|.+++.. ...+.++++|++|+++.+.... .....+..+++|++|+++++.+.+.+. .+ ..+++|+.|++++|
T Consensus 104 L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCCCC-SCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccCccC-hhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 9999887553 3568889999999998765432 234456677788888888777666332 22 23456666666665
Q ss_pred ccCCCcHH--------------------------------------------------HHhhhC--CCccEEEcCCCCCc
Q 043452 162 KLVGSFPA--------------------------------------------------WLLQHN--TKLEVLRLTNNSFT 189 (384)
Q Consensus 162 ~~~~~~~~--------------------------------------------------~~~~~~--~~L~~L~l~~~~~~ 189 (384)
.+.+..+. ..+..+ ++|++|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 44322111 011122 33777777777776
Q ss_pred CcccccCccccCCceEeeecCccCCCcchhH--------------------------------HHhccCCcEEEccCCcC
Q 043452 190 GSLQLSNSKLDFLHHLDISSNSFTGRLPQNM--------------------------------STILQKLVYLDMSKNKF 237 (384)
Q Consensus 190 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------------------------------~~~~~~L~~L~l~~~~~ 237 (384)
...+..+..+++|++|++++|.+.+..+..+ +..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 6666667777788888887777653222221 12245555666666655
Q ss_pred CCccchhccCCCCCcEEEeeccccccc-cccchhcc--CCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCccc
Q 043452 238 EGSISSSISEMKDLRFLDLSRNQFSGE-LSAPLLTG--CFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRI 314 (384)
Q Consensus 238 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 314 (384)
.+..+..+..+++|++|++++|.+... .....+.. .++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 555555555566666666655542211 11111111 124444444555555444555555566666666666555444
Q ss_pred chhhhhccccceEEEcCCCccc--------------------------cccchhhhccCCccEEEccCcccccccccccc
Q 043452 315 SNGFLSSARSLQVLDISNNKLV--------------------------GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLK 368 (384)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~~--------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 368 (384)
+...+..+++|++|++++|.+. +..|.++..+++|+.|++++|+++++.+..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 4344444455555555555443 34566677777888888888887766666777
Q ss_pred cCCCCceEeCcCCCCC
Q 043452 369 NLEALEILDVSENNLS 384 (384)
Q Consensus 369 ~~~~L~~l~l~~~~~s 384 (384)
.+++|+.|++++|.++
T Consensus 502 ~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLA 517 (680)
T ss_dssp TCTTCCEEECCSSCCG
T ss_pred cccccCEEeCCCCCcc
Confidence 8888888888888763
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-38 Score=309.31 Aligned_cols=325 Identities=19% Similarity=0.225 Sum_probs=174.5
Q ss_pred CchhhhcCCCCCEEEeecCcccC-----------------ccCcccc--CCCCccEEECCCCccccccccccCCCCCchh
Q 043452 46 LPQCLKNLTRLKVFGISSNQLSG-----------------SLPSVIA--SLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE 106 (384)
Q Consensus 46 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 106 (384)
+|..++++++|++|++++|.+++ .+|..+. ++++|++|++++|.+.+..+ ..+.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCC
Confidence 44555566666666666666554 1555554 66666666666665555443 4455566666
Q ss_pred hhhhhccc-CceeeccC-------CCCCCCCccEEEccCCCCCCccc--cccccCCCCeEeccCCccCCCcHHHHhhhCC
Q 043452 107 FFMLSLVN-NTLEVETE-------NWLPTSQLKVLHLRNCNLNGTLG--FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176 (384)
Q Consensus 107 ~l~l~~~~-~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 176 (384)
.|+++.+. ......+. .+..+++|++|++++|.+..++. .+..+++|+.|++++|.++ .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence 66665554 22101111 23334456666666655555555 5555556666666655554 444 344555
Q ss_pred CccEEEcCCCCCcCcccccCccccC-CceEeeecCccCCCcchhHHH------------------------------hcc
Q 043452 177 KLEVLRLTNNSFTGSLQLSNSKLDF-LHHLDISSNSFTGRLPQNMST------------------------------ILQ 225 (384)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~------------------------------~~~ 225 (384)
+|+.|++++|.+. ..+..+..+++ |++|++++|.+. .++..+.. ..+
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 5555555555555 33444555555 555555555554 33322211 012
Q ss_pred CCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhcc-------CCcceEEEccCCccccccccccc--c
Q 043452 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG-------CFSLWLLDLSHNSFCGQVSPKFM--N 296 (384)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~ 296 (384)
+|+.|++++|.++......+..+++|+.|++++|.+. ..+...+.. +++|++|++++|.+. ..|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 4555555555555333333335566666666666655 333333322 236666666666665 3444444 5
Q ss_pred cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCC------CccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452 297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISN------NKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL 370 (384)
Q Consensus 297 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 370 (384)
+++|+.|++++|.+++ ++.. +..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++. .+|..+.
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~-- 826 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT-- 826 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--
T ss_pred CCCcCEEEeCCCCCCc-cchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--
Confidence 6666666666666663 3333 33556666666654 4555566666666666666666666663 4555443
Q ss_pred CCCceEeCcCCCC
Q 043452 371 EALEILDVSENNL 383 (384)
Q Consensus 371 ~~L~~l~l~~~~~ 383 (384)
++|+.|+|++|++
T Consensus 827 ~~L~~LdLs~N~l 839 (876)
T 4ecn_A 827 PQLYILDIADNPN 839 (876)
T ss_dssp SSSCEEECCSCTT
T ss_pred CCCCEEECCCCCC
Confidence 5666666666665
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-38 Score=303.56 Aligned_cols=354 Identities=18% Similarity=0.197 Sum_probs=267.7
Q ss_pred CCCccccEEeCcCcccccc-----------------cchhhhh--ccccccEEecCCCccccCCchhhhcCCCCCEEEee
Q 043452 2 AKFKNLKALDLSYTGINGS-----------------LENQGIC--ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 62 (384)
.++++|++|+|++|.+++. + |..+. ++++|++|++++|.+.+.+|..++++++|++|+++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4567788888888877751 4 34444 77888888888887777777778888888888888
Q ss_pred cCc-ccC-ccCccccC-------CCCccEEECCCCcccccccc-ccCCCCCchhhhhhhcccCceeeccCCCCCCCCccE
Q 043452 63 SNQ-LSG-SLPSVIAS-------LTSLQYLDLSDNYFQGIFYL-SSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKV 132 (384)
Q Consensus 63 ~~~-~~~-~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 132 (384)
+|. +++ ..|..+.+ +++|++|++++|.++ .++. ..+.++++|+.|+++.+... . .+ .+..+++|+.
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~-lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H-LE-AFGTNVKLTD 599 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B-CC-CCCTTSEESE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c-ch-hhcCCCcceE
Confidence 776 664 45554443 348888888888777 3331 25778888888888877655 2 22 7778888888
Q ss_pred EEccCCCCCCccccccccCC-CCeEeccCCccCCCcHHHHhhhC--CCccEEEcCCCCCcCccccc---Cc--cccCCce
Q 043452 133 LHLRNCNLNGTLGFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHN--TKLEVLRLTNNSFTGSLQLS---NS--KLDFLHH 204 (384)
Q Consensus 133 L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~ 204 (384)
|++++|.+..++..+..+++ |+.|++++|.++ .+|..+ ... ++|+.|++++|.+.+..+.. +. ..++|+.
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 88888888877777888888 999999888877 666433 233 34889999988886543321 22 4458999
Q ss_pred EeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc-------CCCCCcEEEeeccccccccccchh-ccCCcc
Q 043452 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS-------EMKDLRFLDLSRNQFSGELSAPLL-TGCFSL 276 (384)
Q Consensus 205 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L 276 (384)
|++++|.+. .++..++..+++|+.|++++|.++......+. ++++|+.|++++|.+. ..+..++ ..+++|
T Consensus 678 L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 999999998 88888887799999999999999844333332 2339999999999998 5555554 479999
Q ss_pred eEEEccCCcccccccccccccCCcCeEeCCC------CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCcc
Q 043452 277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN------NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA 350 (384)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 350 (384)
+.|++++|.+.+ .|..+..+++|+.|++++ |.+.+.++.. +..+++|+.|++++|.+ +.+|..+. ++|+
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~ 830 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY 830 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence 999999999987 677888999999999976 6666555544 66789999999999999 47777654 6999
Q ss_pred EEEccCccccccccccccc
Q 043452 351 LLTVSKNLLEGNIPVQLKN 369 (384)
Q Consensus 351 ~L~l~~~~~~~~~~~~~~~ 369 (384)
.|+|++|++....+..+..
T Consensus 831 ~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 831 ILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp EEECCSCTTCEEECGGGHH
T ss_pred EEECCCCCCCccChHHccc
Confidence 9999999998766666543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=294.70 Aligned_cols=366 Identities=23% Similarity=0.250 Sum_probs=265.3
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 84 (384)
++|++|++++|.++ .+++..|..+++|++|++++|++.+..|..|+.+++|++|++++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 57888888888887 565677888888999999888888766788888888899999888887 45554 788888888
Q ss_pred CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCc--cEEEccCCCC--CC-ccc--------------
Q 043452 85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQL--KVLHLRNCNL--NG-TLG-------------- 145 (384)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~-------------- 145 (384)
+++|.+++......+.++++|++|+++.+.... ..+..+++| ++|+++++.+ .+ .+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 888888764333567788888888887765432 234455555 7777776655 21 111
Q ss_pred ------------------------------------------cccccCCCCeEeccCCccCCCcHHHHhh--hCCCccEE
Q 043452 146 ------------------------------------------FLQKQHDLKSLDLSHNKLVGSFPAWLLQ--HNTKLEVL 181 (384)
Q Consensus 146 ------------------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L 181 (384)
.+..+++|+.|++.++.+.+..+..+.. ..++|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 1233344444444444443222222211 24578888
Q ss_pred EcCCCCCcCcccccC-----ccccCCceEeeecCccCCCcc-hhHH------------------------HhccCCcEEE
Q 043452 182 RLTNNSFTGSLQLSN-----SKLDFLHHLDISSNSFTGRLP-QNMS------------------------TILQKLVYLD 231 (384)
Q Consensus 182 ~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~~~------------------------~~~~~L~~L~ 231 (384)
++++|.+.+..+..+ ..+++|+.++++++.+ .++ ..+. ..+++|++|+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 888887765555555 5566666666665554 222 1111 3467899999
Q ss_pred ccCCcCCCccchhccCCCCCcEEEeeccccccc-cccchhccCCcceEEEccCCcccccccc-cccccCCcCeEeCCCCc
Q 043452 232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE-LSAPLLTGCFSLWLLDLSHNSFCGQVSP-KFMNLTQLGWLSLDNNN 309 (384)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~ 309 (384)
+++|.+++..+..+..+++|+.|++++|.+.+. .....+..+++|++|++++|.+.+..+. .+..+++|++|++++|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 999999887788888999999999999998731 1224567799999999999999874444 47788999999999999
Q ss_pred CCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 310 FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
+++..+..+ .++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+|+
T Consensus 411 l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 411 LTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCGGGGGSC---CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcchhhhh---cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 875554432 169999999999998 77887779999999999999999544445899999999999999985
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-36 Score=277.79 Aligned_cols=344 Identities=28% Similarity=0.347 Sum_probs=279.5
Q ss_pred CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452 4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 83 (384)
++++++|++.++.+. .++ .+..+++|++|++++|.+.+ .+. +..+++|++|+++++.+....+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 578999999999886 563 38889999999999999885 444 8899999999999999885544 8899999999
Q ss_pred ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCcc
Q 043452 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL 163 (384)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 163 (384)
++++|.+++.. .+.++++|++|+++.+..... ..+..+++|++|+++ +...... .+..+++|+.|++++|.+
T Consensus 118 ~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITDID---PLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCCCG---GGTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCCh---HHcCCCCCCEEECCCCccCCC---hhhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCCcC
Confidence 99999888763 388899999999987754332 247788899999986 3444443 378899999999999988
Q ss_pred CCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch
Q 043452 164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS 243 (384)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 243 (384)
. .++. +..+++|++|++++|.+....+ +..+++|++|++++|.+.+ .+ .+ ..+++|++|++++|.+.+..+
T Consensus 190 ~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 190 S-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TL-ASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp C-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GG-GGCTTCSEEECCSSCCCCCGG-
T ss_pred C-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hh-hcCCCCCEEECCCCccccchh-
Confidence 6 3433 5688999999999998876544 6678999999999998873 32 23 348899999999999886544
Q ss_pred hccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccc
Q 043452 244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR 323 (384)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 323 (384)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..++
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~ 331 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLT 331 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCT
T ss_pred -hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCc
Confidence 7788999999999999874332 6678999999999999886544 6788999999999999885443 56779
Q ss_pred cceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 324 SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
+|+.|++++|.+.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 999999999988854 568899999999999999987766 888999999999999764
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=301.77 Aligned_cols=380 Identities=23% Similarity=0.252 Sum_probs=243.3
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCcc--ccCCC
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSV--IASLT 78 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~ 78 (384)
|..+++|++|++++|...+.+++..|.++++|++|++++|.+.+..|.+|..+++|++|++++|.+.+..+.. +.+++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 5678889999998886666777788888899999999988888777888888889999999888887655544 78888
Q ss_pred CccEEECCCCccccccccccCCCCCchhhhhhhcccCceee-------------------------ccCCCCCCC-----
Q 043452 79 SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV-------------------------ETENWLPTS----- 128 (384)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------------~~~~~~~~~----- 128 (384)
+|++|++++|.+++..+...+.++++|++|+++.+...... ....+..++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 88888888888877655556788888888887765432110 011112222
Q ss_pred -CccEEEccCCCCCC-ccccc------------------------------------cc--cCCCCeEeccCCccCCCcH
Q 043452 129 -QLKVLHLRNCNLNG-TLGFL------------------------------------QK--QHDLKSLDLSHNKLVGSFP 168 (384)
Q Consensus 129 -~L~~L~l~~~~~~~-~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~ 168 (384)
.|+.|+++++.+.. .+..+ .. .++|+.|++++|.+. .++
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~ 282 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLN 282 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EEC
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccC
Confidence 27777777765432 11111 11 256777777777665 333
Q ss_pred HHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCC
Q 043452 169 AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEM 248 (384)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 248 (384)
...+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+..+..+
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccChhhhcCC
Confidence 4445677788888888887776666677777788888888887763333333 346778888888877776666666777
Q ss_pred CCCcEEEeeccccccccc---------------------------------------cchhccCCcceEEEccCCccccc
Q 043452 249 KDLRFLDLSRNQFSGELS---------------------------------------APLLTGCFSLWLLDLSHNSFCGQ 289 (384)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~---------------------------------------~~~~~~~~~L~~L~l~~~~~~~~ 289 (384)
++|++|++++|.+.+... ...+..+++|++|++++|.+.+.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence 777777777776652110 01122455555555555555432
Q ss_pred ccc-cccccCCcCeEeCCCCcCCcc----cchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc
Q 043452 290 VSP-KFMNLTQLGWLSLDNNNFSGR----ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP 364 (384)
Q Consensus 290 ~~~-~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 364 (384)
.+. .+..+++|+.|++++|.++.. .....+..+++|+.|++++|.+++..+.++.++++|+.|++++|++++..+
T Consensus 442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccCh
Confidence 221 223345555666655555411 111234455666667777666666666666667777777777776665544
Q ss_pred cccccCCCCceEeCcCCCCC
Q 043452 365 VQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 365 ~~~~~~~~L~~l~l~~~~~s 384 (384)
..+. ++|+.|++++|.++
T Consensus 522 ~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 522 NDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp CCCC--SCCCEEEEEEECCC
T ss_pred hhhh--ccccEEECCCCcCC
Confidence 4443 56666666666553
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=282.18 Aligned_cols=361 Identities=23% Similarity=0.202 Sum_probs=270.0
Q ss_pred cEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCC
Q 043452 8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 87 (384)
++|+++++.++ .+|.. +. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 58999999998 67543 32 8999999999999977778999999999999999999988899999999999999999
Q ss_pred CccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCC--CeEeccCCcc--
Q 043452 88 NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDL--KSLDLSHNKL-- 163 (384)
Q Consensus 88 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-- 163 (384)
|.++.... . .+++|++|+++.+.......+..+..+++|++|+++++.+.+ ..+..+++| +.|++++|.+
T Consensus 79 N~l~~lp~-~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLVKISC-H---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCCEEEC-C---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CceeecCc-c---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc
Confidence 99985422 2 899999999998776554445678889999999999998875 346667777 9999988877
Q ss_pred CCCcHHHHh-------------------------hhCCCccEEEcCCCC------------------------------C
Q 043452 164 VGSFPAWLL-------------------------QHNTKLEVLRLTNNS------------------------------F 188 (384)
Q Consensus 164 ~~~~~~~~~-------------------------~~~~~L~~L~l~~~~------------------------------~ 188 (384)
.+..+..+. ..+++|+.+++++|. +
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 433333221 123444455444442 2
Q ss_pred cCcccccC---ccccCCceEeeecCccCCCcchhHH----HhccCCcEEEccCCcC------------------------
Q 043452 189 TGSLQLSN---SKLDFLHHLDISSNSFTGRLPQNMS----TILQKLVYLDMSKNKF------------------------ 237 (384)
Q Consensus 189 ~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~------------------------ 237 (384)
.......+ ...++|++|++++|.+.+.++..++ ..+++|+.++++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 11000000 0134788899998888766666552 2255555555555544
Q ss_pred --CCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc--cccccccccCCcCeEeCCCCcCCcc
Q 043452 238 --EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG--QVSPKFMNLTQLGWLSLDNNNFSGR 313 (384)
Q Consensus 238 --~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~ 313 (384)
.... ....+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.+++.
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred cccccc--chhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 2211 11567889999999998874333 445678899999999998886 4456688889999999999998855
Q ss_pred cchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 314 ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++...+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+|+
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 6766677778999999999988866666543 78999999999998 67777779999999999999875
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.5e-35 Score=259.19 Aligned_cols=307 Identities=22% Similarity=0.314 Sum_probs=243.1
Q ss_pred hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452 26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL 105 (384)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 105 (384)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~------------ 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI------------ 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC------------
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc------------
Confidence 5677888999998888873 44 37788889999998888874433 78888999999988876643
Q ss_pred hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185 (384)
Q Consensus 106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (384)
..+..+++|++|+++++.+..++. +..+++|+.|++++|.....++. +..+++|++|++++
T Consensus 104 ----------------~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 104 ----------------SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTE 164 (347)
T ss_dssp ----------------GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCS
T ss_pred ----------------hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecC
Confidence 124556778888888887777555 77888888888888855445544 56888888888888
Q ss_pred CCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccccc
Q 043452 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL 265 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 265 (384)
+.+..... +..+++|++|++++|.+. ..+. ...+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 165 SKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp SCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence 87775444 677888999999888887 3333 3457899999999998875544 778899999999999887433
Q ss_pred ccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc
Q 043452 266 SAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345 (384)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 345 (384)
. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+.+..+..+.+
T Consensus 238 ~---~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 238 P---LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp G---GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred c---hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 2 67789999999999988764 457788999999999999884 3 23677899999999999999888899999
Q ss_pred cCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
+++|+.|++++|++++..| +..+++|++|++++|+|+
T Consensus 310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999999987666 889999999999999985
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-36 Score=284.54 Aligned_cols=365 Identities=24% Similarity=0.272 Sum_probs=243.3
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 84 (384)
++|++|++++|.++ .+++..|..+++|++|++++|.+.+..+.+|..+++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 45667777777665 454566667777777777777766555666667777777777777666 34443 667777777
Q ss_pred CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCc--cEEEccCCCC--CC-ccccc------------
Q 043452 85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQL--KVLHLRNCNL--NG-TLGFL------------ 147 (384)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~~~------------ 147 (384)
+++|.+++......+.++++|++|+++.+.... ..+..+++| ++|+++++.+ .+ .+..+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 777766654333456666677777666544322 233444444 6666666655 22 11111
Q ss_pred --------------cccCCCCeEeccCCc----------------------------cCCCcHHHH--hhhCCCccEEEc
Q 043452 148 --------------QKQHDLKSLDLSHNK----------------------------LVGSFPAWL--LQHNTKLEVLRL 183 (384)
Q Consensus 148 --------------~~~~~L~~L~l~~~~----------------------------~~~~~~~~~--~~~~~~L~~L~l 183 (384)
..+++|+.++++++. +.+.....+ ....++|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 123344444444432 111000000 012347888888
Q ss_pred CCCCCcCcccccC-----ccc--------------------------cCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452 184 TNNSFTGSLQLSN-----SKL--------------------------DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232 (384)
Q Consensus 184 ~~~~~~~~~~~~~-----~~~--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 232 (384)
++|.+.+..+..+ ..+ .+|++|+++++.+..... ...+++|++|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l 360 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNF 360 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEEC
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC---ccCCCCceEEEC
Confidence 8887764444333 222 336666666665542111 134789999999
Q ss_pred cCCcCCCccchhccCCCCCcEEEeeccccccccc-cchhccCCcceEEEccCCcccc-cccccccccCCcCeEeCCCCcC
Q 043452 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS-APLLTGCFSLWLLDLSHNSFCG-QVSPKFMNLTQLGWLSLDNNNF 310 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~ 310 (384)
++|.+++..+..+..+++|+.|++++|.+.+... ...+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999998788888999999999999999874221 2456789999999999999987 4444577889999999999998
Q ss_pred CcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 311 SGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++..+..+. ++|+.|++++|.++ .+|..+.++++|+.|++++|++++..+..+..+++|+.+++++|+|+
T Consensus 441 ~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 441 TGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred Ccchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 754443221 69999999999998 67776669999999999999999544444899999999999999985
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.1e-35 Score=268.37 Aligned_cols=326 Identities=23% Similarity=0.316 Sum_probs=274.2
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 80 (384)
+..+++|++|++++|.++ .+++ +.++++|++|++++|.+.+. +. ++++++|++|++++|.++...+ +.++++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCCChH--HcCCCCC
Confidence 356899999999999997 5544 89999999999999999854 44 8999999999999999885433 8999999
Q ss_pred cEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccC
Q 043452 81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSH 160 (384)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 160 (384)
++|++++|.+.+. ..+..+++|+++.+..... ....+..+++|++|+++++.+..++ .+..+++|+.|++++
T Consensus 137 ~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 137 NRLELSSNTISDI---SALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp SEEEEEEEEECCC---GGGTTCTTCSEEEEEESCC----CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred CEEECCCCccCCC---hhhccCCcccEeecCCccc----CchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecC
Confidence 9999999998875 3588899999999863221 1223778899999999999988764 478899999999999
Q ss_pred CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCc
Q 043452 161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240 (384)
Q Consensus 161 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 240 (384)
|.+.+..+ ++.+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++.
T Consensus 209 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 209 NQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp SCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCC
T ss_pred Cccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcc
Confidence 99875544 56889999999999988864 356789999999999999884333 44589999999999999865
Q ss_pred cchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhh
Q 043452 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLS 320 (384)
Q Consensus 241 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 320 (384)
.+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+.
T Consensus 281 ~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~ 350 (466)
T 1o6v_A 281 SP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLA 350 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGT
T ss_pred cc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhc
Confidence 44 7789999999999999874332 6779999999999999987665 67899999999999999844 2 367
Q ss_pred ccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 321 SARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 321 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
.+++|+.|++++|.+.+..| +..+++|+.|++++|++++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78999999999999987766 7899999999999999986
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=274.68 Aligned_cols=300 Identities=21% Similarity=0.257 Sum_probs=185.6
Q ss_pred ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452 30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 109 (384)
++++.|+++++.+.+..+..|.++++|++|+++++.+....|..+.++++|++|++++|.++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 93 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK------------------ 93 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC------------------
Confidence 34555555555555444455555555555555555555444555555555555555555443
Q ss_pred hhcccCceeeccCCCCCCCCccEEEccCCCCCCccc-cccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF 188 (384)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 188 (384)
.++. .+..+++|+.|++++|.+. .++...+..+++|++|++++|.+
T Consensus 94 --------------------------------~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 94 --------------------------------LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp --------------------------------SCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTC
T ss_pred --------------------------------ccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCcc
Confidence 3222 2344555555555555544 22223334556666666666666
Q ss_pred cCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452 189 TGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP 268 (384)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 268 (384)
....+..+..+++|++|++++|.+. ..+...+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+..
T Consensus 141 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 141 VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred ceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 5555556666677777777777666 455444455677777777777776555556666777777777776655444444
Q ss_pred hhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCC
Q 043452 269 LLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS 348 (384)
Q Consensus 269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 348 (384)
.+. ..+|++|++++|.+....+..+..+++|+.|++++|.++ .+....+..+++|+.|++++|.+.+..+.++.++++
T Consensus 220 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 220 CLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred ccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 333 346777777777776555556667777777777777776 444444566677777777777777666777777777
Q ss_pred ccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 349 LALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 77777777777766666667777777777777765
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.8e-35 Score=276.27 Aligned_cols=348 Identities=22% Similarity=0.276 Sum_probs=261.5
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCc-cCccccCCCC
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGS-LPSVIASLTS 79 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 79 (384)
|.++++|++|++++|.++ .+++..|..+++|++|++++|.+.+..+..++.+++|++|++++|.++.. .+..+.++++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 568899999999999998 66678899999999999999999977677799999999999999998853 5678899999
Q ss_pred ccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCC------------------------CCCccEEEc
Q 043452 80 LQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLP------------------------TSQLKVLHL 135 (384)
Q Consensus 80 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~------------------------~~~L~~L~l 135 (384)
|++|++++|.+.+..+...+.++++|++|+++.+..... ....+.. +++|++|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 999999999855555556788899999999987654432 2222332 456666666
Q ss_pred cCCCCCCcc----ccc----------------------------c-----------------------------------
Q 043452 136 RNCNLNGTL----GFL----------------------------Q----------------------------------- 148 (384)
Q Consensus 136 ~~~~~~~~~----~~~----------------------------~----------------------------------- 148 (384)
+++.+.+.. ... .
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 666554421 000 0
Q ss_pred ------------------------ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc---cccCccccC
Q 043452 149 ------------------------KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL---QLSNSKLDF 201 (384)
Q Consensus 149 ------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~ 201 (384)
..++|+.|++++|.+. .+|..+++.+++|++|++++|.+.+.. ...+..+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 1123444555555443 566666667888888888888877544 234667788
Q ss_pred CceEeeecCccCCCcch--hHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEE
Q 043452 202 LHHLDISSNSFTGRLPQ--NMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLL 279 (384)
Q Consensus 202 L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 279 (384)
|++|++++|.+. ..+. .....+++|++|++++|.++ ..+..+..+++|++|++++|.+. ..+... .++|++|
T Consensus 363 L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L 436 (549)
T 2z81_A 363 LQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVL 436 (549)
T ss_dssp CCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEE
T ss_pred CcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh---cCCceEE
Confidence 888888888886 3432 33455788888888888887 45566777788888888888876 322222 3688899
Q ss_pred EccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccc
Q 043452 280 DLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL 359 (384)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 359 (384)
++++|.+++.. ..++.|++|++++|.++ .++. ...+++|+.|++++|.+++..++++..+++|+.|++++|++
T Consensus 437 ~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 437 DVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp ECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ECCCCChhhhc----ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 99998887643 46889999999999998 5554 34578999999999999988888899999999999999998
Q ss_pred ccccc
Q 043452 360 EGNIP 364 (384)
Q Consensus 360 ~~~~~ 364 (384)
.+..+
T Consensus 510 ~~~~~ 514 (549)
T 2z81_A 510 DCSCP 514 (549)
T ss_dssp CCCHH
T ss_pred cCCCc
Confidence 86544
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-35 Score=272.01 Aligned_cols=347 Identities=20% Similarity=0.221 Sum_probs=284.9
Q ss_pred ccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhh
Q 043452 32 LIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS 111 (384)
Q Consensus 32 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 111 (384)
-+.++.+++.++ .+|. +. ++|++|+++++.+++..|..+.++++|++|++++|.+.+..+...+..+++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456777777777 5565 33 7999999999999988899999999999999999998766666789999999999999
Q ss_pred cccCceeeccCCCCCCCCccEEEccCCCCCC-cccc--ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452 112 LVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGF--LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF 188 (384)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 188 (384)
.+... ......+..+++|++|++++|.+.+ .+.. +..+++|++|++++|.+++..+..++..+++|++|++++|.+
T Consensus 88 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 87653 3456678889999999999999887 3333 888999999999999998666766678999999999999999
Q ss_pred cCcccccCccc--cCCceEeeecCccCCCcchhHH-------HhccCCcEEEccCCcCCCccchhccC---CCCCcEEEe
Q 043452 189 TGSLQLSNSKL--DFLHHLDISSNSFTGRLPQNMS-------TILQKLVYLDMSKNKFEGSISSSISE---MKDLRFLDL 256 (384)
Q Consensus 189 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l 256 (384)
....+..+..+ ++|+.++++++.+.+..+..+. ..+++|++|++++|.+++..+..+.. .++|+.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 87777777665 7899999999988743222111 12468999999999998766655543 389999999
Q ss_pred eccccccccc---------cchhc--cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452 257 SRNQFSGELS---------APLLT--GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325 (384)
Q Consensus 257 ~~~~~~~~~~---------~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 325 (384)
++|...+... ...+. ..++|++|++++|.+.+..+..+..+++|++|++++|.++ ...+..+..+++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L 325 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccC
Confidence 9886542211 11111 2368999999999999988889999999999999999998 4545557778999
Q ss_pred eEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 326 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|++++|.+.+..+..+.++++|+.|++++|++++..|..|..+++|+.|++++|+|+
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 99999999999888899999999999999999999888999999999999999999885
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=264.67 Aligned_cols=301 Identities=24% Similarity=0.298 Sum_probs=248.3
Q ss_pred ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452 5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 84 (384)
+++++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+|.++++|++|+++++.++...+..+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57899999999998 67678899999999999999999987889999999999999999999976667789999999999
Q ss_pred CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCcc
Q 043452 85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKL 163 (384)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 163 (384)
+++|.+.... ...+..+++|++|+++++.+.. .+..+..+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~--------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 111 ISENKIVILL--------------------------DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CTTSCCCEEC--------------------------TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCCccccCC--------------------------hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 9999876542 2345667788888888888776 445677888899999988888
Q ss_pred CCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch
Q 043452 164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS 243 (384)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 243 (384)
+ .++...+..+++|+.|+++++.+.......+..+++|++|+++++...+..+...+. ..+|++|++++|.++.....
T Consensus 165 ~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp S-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHH
T ss_pred c-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHH
Confidence 7 566666678889999999988888777777888889999999888776666655554 44888999998888866666
Q ss_pred hccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccc
Q 043452 244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR 323 (384)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 323 (384)
.+..+++|+.|++++|.+. ......+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..++
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 320 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG 320 (477)
T ss_dssp HHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGG
T ss_pred HhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCc
Confidence 7788888999999988887 455556677888999999988888877888888888999999888887 56666677778
Q ss_pred cceEEEcCCCccc
Q 043452 324 SLQVLDISNNKLV 336 (384)
Q Consensus 324 ~L~~L~l~~~~~~ 336 (384)
+|+.|++++|.+.
T Consensus 321 ~L~~L~l~~N~l~ 333 (477)
T 2id5_A 321 NLETLILDSNPLA 333 (477)
T ss_dssp GCCEEECCSSCEE
T ss_pred ccCEEEccCCCcc
Confidence 8899999888775
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-33 Score=248.14 Aligned_cols=305 Identities=23% Similarity=0.325 Sum_probs=245.6
Q ss_pred CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 82 (384)
++++|++|+++++.+. +++ .+..+++|++|++++|.+.+ .+. +..+++|++|++++|.++. . ..+.++++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 5789999999999987 563 38899999999999999984 444 8999999999999999884 3 46899999999
Q ss_pred EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCc
Q 043452 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK 162 (384)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 162 (384)
|++++|.+.+... +..+++|++|+++++........+..+++|+.|++++|.
T Consensus 115 L~l~~n~i~~~~~----------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 115 LYLNEDNISDISP----------------------------LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp EECTTSCCCCCGG----------------------------GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC
T ss_pred EECcCCcccCchh----------------------------hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC
Confidence 9999998765421 445667888888888655545557888889999999888
Q ss_pred cCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccc
Q 043452 163 LVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242 (384)
Q Consensus 163 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 242 (384)
+.+..+ +..+++|++|++++|.+..... +..+++|+.++++++.+.+..+ ...+++|++|++++|.+++..+
T Consensus 167 ~~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 167 VKDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp CCCCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG
T ss_pred cCCchh---hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc
Confidence 763333 6688899999999888875444 6788899999999998874333 3458899999999999886544
Q ss_pred hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA 322 (384)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 322 (384)
+..+++|++|++++|.+.+ . ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.++ ......+..+
T Consensus 239 --~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l 310 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG-NEDMEVIGGL 310 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-GGGHHHHHTC
T ss_pred --hhcCCCCCEEECCCCccCC-C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC-CcChhHhhcc
Confidence 7788999999999998873 2 3467789999999999988865 45778899999999999998 4455567778
Q ss_pred ccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
++|++|++++|.+++..| +..+++|+.|++++|+++
T Consensus 311 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999986655 789999999999999885
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-34 Score=257.30 Aligned_cols=308 Identities=22% Similarity=0.240 Sum_probs=167.9
Q ss_pred ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107 (384)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 107 (384)
.++++++++++++.+....+..+..+++|++|+++++.+....+..+.++++|++|++++|.+++..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------- 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------------- 109 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-------------
Confidence 3456666666666665433334556666666666666665555556666666666666666554331
Q ss_pred hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcccc-ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCC
Q 043452 108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN 186 (384)
Q Consensus 108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 186 (384)
...+..+++|++|+++++.+..++.. +..+++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 110 -------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 110 -------------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp -------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSS
T ss_pred -------------HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCC
Confidence 12233344455555555544443332 344555555555555544 232223344555555555555
Q ss_pred CCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc
Q 043452 187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS 266 (384)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 266 (384)
.++.. .+..+++|++++++++.+. ... ..+.|++|++++|.+..... ...++|+.|++++|.+.+.
T Consensus 176 ~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~-- 241 (390)
T 3o6n_A 176 RLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT-- 241 (390)
T ss_dssp CCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--
T ss_pred cCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--
Confidence 54432 2334455555555555544 211 13456666666665553311 1235666666666666522
Q ss_pred cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhcc
Q 043452 267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346 (384)
Q Consensus 267 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 346 (384)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++.. +..+++|++|++++|.+. .+|..+..+
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l 317 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQF 317 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECS-SSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcc-cCCCCCCCEEECCCCcce-ecCcccccc
Confidence 334556666666666666666556666666666666666666652 2221 234566666666666666 445555666
Q ss_pred CCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
++|+.|++++|++++. .+..+++|+.|++++|+|
T Consensus 318 ~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp TTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCE
T ss_pred CcCCEEECCCCcccee---CchhhccCCEEEcCCCCc
Confidence 6666666666666543 155566666666666665
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=271.85 Aligned_cols=365 Identities=20% Similarity=0.195 Sum_probs=271.1
Q ss_pred CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452 4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 83 (384)
|...++++++++.++ .+|... .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|.++.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 455688999999997 675433 2899999999999997777899999999999999999998888999999999999
Q ss_pred ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCC--CeEeccCC
Q 043452 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDL--KSLDLSHN 161 (384)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~ 161 (384)
++++|.++.... . .+++|++|+++.+.......+..+..+++|++|+++++.+.. ..+..+++| +.|++++|
T Consensus 106 ~Ls~N~l~~lp~-~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQNISC-C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCCEECS-C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCCccCc-c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecc
Confidence 999999885422 2 789999999988776543444567888999999999988765 234444555 88888888
Q ss_pred cc--CCCcHHHH-------------------------hhhCCCccEEEcCCCC---------------------------
Q 043452 162 KL--VGSFPAWL-------------------------LQHNTKLEVLRLTNNS--------------------------- 187 (384)
Q Consensus 162 ~~--~~~~~~~~-------------------------~~~~~~L~~L~l~~~~--------------------------- 187 (384)
.+ ++..+..+ +..+++|+.++++++.
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 76 33322221 1123455555555542
Q ss_pred -CcCccc---ccCccccCCceEeeecCccCCCcchhH----------------------------HHh--ccCCcEEEcc
Q 043452 188 -FTGSLQ---LSNSKLDFLHHLDISSNSFTGRLPQNM----------------------------STI--LQKLVYLDMS 233 (384)
Q Consensus 188 -~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------------~~~--~~~L~~L~l~ 233 (384)
+..... ......++|++|++++|.+.+.++..+ ... .++|++|+++
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 110000 000112378899998888775554432 111 1458888888
Q ss_pred CCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc--ccccccccCCcCeEeCCCCcCC
Q 043452 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ--VSPKFMNLTQLGWLSLDNNNFS 311 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~ 311 (384)
+|.+.... ....+++|++|++++|.+.+. ....+.++++|++|++++|.+.+. .+..+..+++|++|++++|.++
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CCCccccc--CccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 88775332 125789999999999999843 334567799999999999999863 3566888999999999999998
Q ss_pred cccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 312 GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
+.++...+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 657777777889999999999999866665443 78999999999998 56666669999999999999985
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.2e-34 Score=273.92 Aligned_cols=375 Identities=23% Similarity=0.242 Sum_probs=249.8
Q ss_pred cccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEEC
Q 043452 6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 85 (384)
++++|+|++|.++ .+++..|.++++|++|++++|++.+..+.+|..+++|++|++++|.++...+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 6899999999997 787788999999999999999998777778999999999999999988666678899999999999
Q ss_pred CCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCc-cccccccCCC----CeEeccC
Q 043452 86 SDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT-LGFLQKQHDL----KSLDLSH 160 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L----~~L~l~~ 160 (384)
++|.+++.. ...+.++++|++|+++.+..........+..+++|++|+++++.+.++ +..+..+.++ ..++++.
T Consensus 132 s~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999887653 356888999999999887665544555667788999999998887662 2223222221 1222222
Q ss_pred Ccc-----------------------CCCcHHHHhhhCCCc---------------------------------------
Q 043452 161 NKL-----------------------VGSFPAWLLQHNTKL--------------------------------------- 178 (384)
Q Consensus 161 ~~~-----------------------~~~~~~~~~~~~~~L--------------------------------------- 178 (384)
+.+ ........+..++.+
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 221 111122222222222
Q ss_pred ----------------------------------------cEEEcCCCCCcCccc-------------------ccCccc
Q 043452 179 ----------------------------------------EVLRLTNNSFTGSLQ-------------------LSNSKL 199 (384)
Q Consensus 179 ----------------------------------------~~L~l~~~~~~~~~~-------------------~~~~~~ 199 (384)
+.|++.++.+..... .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 222222221111000 001123
Q ss_pred cCCceEeeecCccCCCcc-hhHHHhccCCcEEEccCCcCC-----------------------Cc-cchhccCCCCCcEE
Q 043452 200 DFLHHLDISSNSFTGRLP-QNMSTILQKLVYLDMSKNKFE-----------------------GS-ISSSISEMKDLRFL 254 (384)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-----------------------~~-~~~~~~~~~~L~~L 254 (384)
++|+.++++.+.+..... ........+++.+++..+... .. ....+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 344444444444321110 111111333444433333221 10 11223344555566
Q ss_pred EeeccccccccccchhccCCcceEEEccCCccc-ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCC
Q 043452 255 DLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC-GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333 (384)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (384)
+++.|.+. ......+..++.++.|++++|... ...+..+..+++|++|++++|.++ .+++..+..+++|++|++++|
T Consensus 451 ~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 451 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp ECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTS
T ss_pred cccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECCCC
Confidence 66666554 233344566788888888888644 356677888899999999999998 555566788899999999999
Q ss_pred ccccccchhhhccCCccEEEccCcccccccccccccC-CCCceEeCcCCCCC
Q 043452 334 KLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL-EALEILDVSENNLS 384 (384)
Q Consensus 334 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~s 384 (384)
.+++..+.+|.++++|+.|++++|++++..|..+..+ ++|+.|++++|+|+
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9998888899999999999999999998889899888 58999999999985
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.6e-34 Score=271.79 Aligned_cols=358 Identities=24% Similarity=0.274 Sum_probs=255.5
Q ss_pred CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452 1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 80 (384)
|+++++|++|+|++|.++ .+++.+|.++++|++|++++|++.+..+.+|..+++|++|++++|.++...+..+.++++|
T Consensus 72 f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 678899999999999997 7878889999999999999999986666788999999999999999987777778999999
Q ss_pred cEEECCCCccccccccccCCCCCchhhhhhhcccCceeec--------------------------cCCCCCCCCccEEE
Q 043452 81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE--------------------------TENWLPTSQLKVLH 134 (384)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------------------------~~~~~~~~~L~~L~ 134 (384)
++|++++|.+++......+..+++|++|+++.+....... .........++.+.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~ 230 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 230 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhh
Confidence 9999999988765444566777777777765543211100 00000000011111
Q ss_pred cc------------------------------------------------------------------------------
Q 043452 135 LR------------------------------------------------------------------------------ 136 (384)
Q Consensus 135 l~------------------------------------------------------------------------------ 136 (384)
+.
T Consensus 231 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 310 (635)
T 4g8a_A 231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS 310 (635)
T ss_dssp EESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred hhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence 11
Q ss_pred ----CCCCCCccccccccCCCCeEeccCCccCCCcHH------------------HHhhhCCCccEEEcCCCCCcC----
Q 043452 137 ----NCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA------------------WLLQHNTKLEVLRLTNNSFTG---- 190 (384)
Q Consensus 137 ----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~~~~~~---- 190 (384)
.+.+..+ ..+.....++.|++.++.+...... .....+++|+.++++.+.+..
T Consensus 311 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 311 FSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred ccccccccccc-cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence 0000000 0111223344444444332210000 001133455555555543321
Q ss_pred ---------------------cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCC
Q 043452 191 ---------------------SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMK 249 (384)
Q Consensus 191 ---------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 249 (384)
.....+..+++|+.+++..+......+...+..+++++.++++.|.+....+..+..++
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 12234556778888888877766455555556688999999999998877778888899
Q ss_pred CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (384)
.++.+++++|..........+..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+++..+..+++|+.|+
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-BCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC-CCChhHHhCCCCCCEEE
Confidence 99999999998664555567788999999999999999988999999999999999999998 55666678889999999
Q ss_pred cCCCccccccchhhhcc-CCccEEEccCccccc
Q 043452 330 ISNNKLVGQIPSWIGNF-SSLALLTVSKNLLEG 361 (384)
Q Consensus 330 l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 361 (384)
+++|.+++..|+++..+ ++|+.|++++|++..
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999998889999887 689999999999875
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-33 Score=262.81 Aligned_cols=308 Identities=22% Similarity=0.248 Sum_probs=193.3
Q ss_pred ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107 (384)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 107 (384)
.+++++.++++++.+....+..+..+++|++|+++++.+.+..+..+..+++|++|++++|.+++..
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------- 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------------- 115 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC-------------
Confidence 3466777777777766544455666777777777777777666667777777777777777665432
Q ss_pred hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcccc-ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCC
Q 043452 108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN 186 (384)
Q Consensus 108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 186 (384)
...+..+++|++|++++|.+..++.. +..+++|+.|++++|.++ .++...+..+++|++|++++|
T Consensus 116 -------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 116 -------------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp -------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTS
T ss_pred -------------HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCC
Confidence 12334455666666666665554433 356666666666666655 333333445666666666666
Q ss_pred CCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc
Q 043452 187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS 266 (384)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 266 (384)
.+... .+..+++|+.|++++|.+.+ .+ ..++|+.|++++|.+...... ..++|+.|++++|.+.+.
T Consensus 182 ~l~~~---~~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~-- 247 (597)
T 3oja_B 182 RLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-- 247 (597)
T ss_dssp CCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--
T ss_pred CCCCc---ChhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--
Confidence 65543 23445666666666666552 21 134677777777766533221 125677777777776632
Q ss_pred cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhcc
Q 043452 267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346 (384)
Q Consensus 267 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 346 (384)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ++. .+..+++|+.|++++|.+. .+|..+..+
T Consensus 248 -~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 248 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EEC-SSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCc-ccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 345567777777777777777667777777777777777777763 222 2344577777777777776 556666777
Q ss_pred CCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
++|+.|++++|++++. .+..+++|+.|++++|+|
T Consensus 324 ~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 324 DRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCE
T ss_pred CCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCC
Confidence 7777777777777643 255677777777777775
No 35
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.7e-35 Score=272.79 Aligned_cols=380 Identities=20% Similarity=0.154 Sum_probs=277.7
Q ss_pred CccccEEeCcCcccccccchhhhhccccccEEecCCCcccc----CCchhhhcCCCCCEEEeecCcccCccCccc-cCCC
Q 043452 4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG----PLPQCLKNLTRLKVFGISSNQLSGSLPSVI-ASLT 78 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 78 (384)
.++|++|+++++.++.......+..+++|++|++++|.+.+ .++..+..+++|++|+++++.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 36789999999998744434448889999999999999874 346677888999999999998875444333 3344
Q ss_pred ----CccEEECCCCcccccc---ccccCCCCCchhhhhhhcccCceeec---cCC-CCCCCCccEEEccCCCCCC-----
Q 043452 79 ----SLQYLDLSDNYFQGIF---YLSSLGNHSNLEFFMLSLVNNTLEVE---TEN-WLPTSQLKVLHLRNCNLNG----- 142 (384)
Q Consensus 79 ----~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~-~~~~~~L~~L~l~~~~~~~----- 142 (384)
+|++|++++|.+++.. ....+..+++|++|+++.+....... ... ....++|++|++++|.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999887532 23567888999999998766432211 111 2235689999999998876
Q ss_pred ccccccccCCCCeEeccCCccCCCcHHHHhh----hCCCccEEEcCCCCCcCc----ccccCccccCCceEeeecCccCC
Q 043452 143 TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQ----HNTKLEVLRLTNNSFTGS----LQLSNSKLDFLHHLDISSNSFTG 214 (384)
Q Consensus 143 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 214 (384)
++..+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.++.. .+..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 3456677899999999999876444433332 356999999999988764 34456678999999999998875
Q ss_pred CcchhHHH----hccCCcEEEccCCcCCCc----cchhccCCCCCcEEEeeccccccccccchh----ccCCcceEEEcc
Q 043452 215 RLPQNMST----ILQKLVYLDMSKNKFEGS----ISSSISEMKDLRFLDLSRNQFSGELSAPLL----TGCFSLWLLDLS 282 (384)
Q Consensus 215 ~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~ 282 (384)
.....+.. .+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.....+. ...++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 44444433 367899999999988753 455666789999999999988643332222 223689999999
Q ss_pred CCccccc----ccccccccCCcCeEeCCCCcCCcccchhhhhc----cccceEEEcCCCcccc----ccchhhhccCCcc
Q 043452 283 HNSFCGQ----VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS----ARSLQVLDISNNKLVG----QIPSWIGNFSSLA 350 (384)
Q Consensus 283 ~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~ 350 (384)
+|.+++. .+..+..+++|++|++++|.+++.....+... .++|++|++++|.+++ .++.++..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9988865 34555677999999999998875444433322 4689999999999886 6778888899999
Q ss_pred EEEccCcccccccccccc-----cCCCCceEeCcCCCC
Q 043452 351 LLTVSKNLLEGNIPVQLK-----NLEALEILDVSENNL 383 (384)
Q Consensus 351 ~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~ 383 (384)
+|++++|++++.....+. ...+|+.|++.++.+
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 999999998865444432 234688888877765
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-32 Score=251.15 Aligned_cols=296 Identities=25% Similarity=0.277 Sum_probs=194.7
Q ss_pred CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452 3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 82 (384)
++++|++|+++++.++ .++ .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++. + +.++++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 4678888888888877 443 477888888888888888753 3 77788888888888887753 3 778888888
Q ss_pred EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCc
Q 043452 83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK 162 (384)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 162 (384)
|++++|.+++. .+..+++|++|+++.+..... .+..+++|++|+++++...+.. .+..+++|+.|++++|.
T Consensus 111 L~L~~N~l~~l----~~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSCC----CCTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCee----cCCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc
Confidence 88888887764 267777888887776654431 3566777888888777443311 35667778888888877
Q ss_pred cCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccc
Q 043452 163 LVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242 (384)
Q Consensus 163 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 242 (384)
+++ ++ +..+++|+.|++++|.++.. .+..+++|++|++++|.+.+ ++ ...+++|++|++++|.+++...
T Consensus 182 l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 182 ITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCC
T ss_pred cce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCH
Confidence 763 44 45677788888887777654 36677788888888887773 44 2346778888888887775432
Q ss_pred hhccCCCCCcEEEeec----------cccccccccchhccCCcceEEEccCCcccccccc--------cccccCCcCeEe
Q 043452 243 SSISEMKDLRFLDLSR----------NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP--------KFMNLTQLGWLS 304 (384)
Q Consensus 243 ~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~l~ 304 (384)
..+++|+.+++++ |...+..+ +..+++|+.|++++|...+..+. .+..+++|++|+
T Consensus 251 ---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 251 ---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp ---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ---HHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 3344444444433 33322222 23466777777777765443332 234455666666
Q ss_pred CCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337 (384)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (384)
+++|.+++ ++ +..+++|+.|++++|.+++
T Consensus 325 L~~N~l~~-l~---l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 325 LNNTELTE-LD---VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCCCSC-CC---CTTCTTCSEEECCSSCCCB
T ss_pred CCCCcccc-cc---cccCCcCcEEECCCCCCCC
Confidence 66666664 21 4455666666666666653
No 37
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.7e-34 Score=263.80 Aligned_cols=356 Identities=20% Similarity=0.143 Sum_probs=269.8
Q ss_pred cccccEEecCCCccccCCch-hhhcCCCCCEEEeecCcccC----ccCccccCCCCccEEECCCCccccccccccCCCCC
Q 043452 29 LKNLIELNLEGNAIEGPLPQ-CLKNLTRLKVFGISSNQLSG----SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHS 103 (384)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 103 (384)
.++|++|+++++.+.+.... .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+.........++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 36799999999998754333 37889999999999999874 34667888999999999999987654333333344
Q ss_pred ----chhhhhhhcccCcee---eccCCCCCCCCccEEEccCCCCCC-ccc----c-ccccCCCCeEeccCCccCCCcH--
Q 043452 104 ----NLEFFMLSLVNNTLE---VETENWLPTSQLKVLHLRNCNLNG-TLG----F-LQKQHDLKSLDLSHNKLVGSFP-- 168 (384)
Q Consensus 104 ----~L~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-~~~----~-~~~~~~L~~L~l~~~~~~~~~~-- 168 (384)
+|++|+++.+..... .....+..+++|++|+++++.+.+ ... . ....++|++|++++|.+++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 799999998765432 335567788999999999998765 121 1 2235689999999998875443
Q ss_pred -HHHhhhCCCccEEEcCCCCCcCcccccCc-----cccCCceEeeecCccCCCcch---hHHHhccCCcEEEccCCcCCC
Q 043452 169 -AWLLQHNTKLEVLRLTNNSFTGSLQLSNS-----KLDFLHHLDISSNSFTGRLPQ---NMSTILQKLVYLDMSKNKFEG 239 (384)
Q Consensus 169 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~ 239 (384)
...+..+++|++|++++|.+.+.....+. ..++|++|++++|.+++.... .....+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 33445789999999999988754443333 256999999999999854322 223348999999999998875
Q ss_pred ccc-----hhccCCCCCcEEEeecccccccc---ccchhccCCcceEEEccCCccccccccccccc-----CCcCeEeCC
Q 043452 240 SIS-----SSISEMKDLRFLDLSRNQFSGEL---SAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL-----TQLGWLSLD 306 (384)
Q Consensus 240 ~~~-----~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~ 306 (384)
... .....+++|++|++++|.+++.. ....+..+++|++|++++|.+.+..+..+... +.|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 322 22335899999999999987432 23345568999999999999877655544432 689999999
Q ss_pred CCcCCcccc---hhhhhccccceEEEcCCCccccccchhhhc-----cCCccEEEccCccccc----ccccccccCCCCc
Q 043452 307 NNNFSGRIS---NGFLSSARSLQVLDISNNKLVGQIPSWIGN-----FSSLALLTVSKNLLEG----NIPVQLKNLEALE 374 (384)
Q Consensus 307 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~ 374 (384)
+|.+++... ...+..+++|++|++++|.+.+..+.++.. .++|+.|++++|++++ ..+..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 999885432 234556799999999999998776666653 6799999999999986 6778888999999
Q ss_pred eEeCcCCCCC
Q 043452 375 ILDVSENNLS 384 (384)
Q Consensus 375 ~l~l~~~~~s 384 (384)
+|++++|+|+
T Consensus 402 ~L~l~~N~i~ 411 (461)
T 1z7x_W 402 ELDLSNNCLG 411 (461)
T ss_dssp EEECCSSSCC
T ss_pred EEECCCCCCC
Confidence 9999999985
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.9e-31 Score=240.45 Aligned_cols=301 Identities=20% Similarity=0.207 Sum_probs=231.5
Q ss_pred hhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCC
Q 043452 24 QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHS 103 (384)
Q Consensus 24 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 103 (384)
..++++++|++|+++++.+.+ .| .++.+++|++|++++|.+++. + +..+++|++|++++|.+++. .+..++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----~~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----DVTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----CCTTCT
T ss_pred cChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----ecCCCC
Confidence 457889999999999999985 45 689999999999999999854 3 88999999999999998875 278899
Q ss_pred chhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEc
Q 043452 104 NLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183 (384)
Q Consensus 104 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 183 (384)
+|++|+++.+..... .+..+++|++|+++++.+.+++ +..+++|+.|++++|...+.++ +..+++|++|++
T Consensus 107 ~L~~L~L~~N~l~~l----~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCC----CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCee----cCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEEC
Confidence 999999987765432 2778899999999999988763 7788999999999986554553 567899999999
Q ss_pred CCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccc
Q 043452 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG 263 (384)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 263 (384)
++|.++... +..+++|++|++++|.+.+ .+ ...+++|++|++++|++++. + +..+++|+.|++++|.+.+
T Consensus 178 s~n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITELD---VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCCCC---CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred CCCccceec---cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence 999888642 7788999999999999874 32 23478999999999999863 3 7788999999999999874
Q ss_pred ccccchhccCCcceEEEc----------cCCcccccccccccccCCcCeEeCCCCcCCcccchh-------hhhccccce
Q 043452 264 ELSAPLLTGCFSLWLLDL----------SHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNG-------FLSSARSLQ 326 (384)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l----------~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------~~~~~~~L~ 326 (384)
. + ...+++|+.|++ ++|...+..+ +..+++|+.|++++|...+.++.. -+..+++|+
T Consensus 248 ~-~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 248 L-D---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp C-C---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred c-C---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 3 2 233555555544 4444443333 356788888888888754333321 144557788
Q ss_pred EEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 327 VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 327 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
.|++++|.+++. + +..+++|+.|++++|++++
T Consensus 322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred EEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 888888888753 2 7778888888888888875
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=8.1e-31 Score=236.00 Aligned_cols=288 Identities=22% Similarity=0.254 Sum_probs=242.4
Q ss_pred cCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCcc
Q 043452 52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLK 131 (384)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 131 (384)
.+++++.++++++.+....+..+.++++|++|++++|.+++.. ...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~--------------------------~~~~~~l~~L~ 96 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--------------------------TYAFAYAHTIQ 96 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC--------------------------TTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC--------------------------hhhccCCCCcC
Confidence 4689999999999988555566789999999999999876542 23567788999
Q ss_pred EEEccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452 132 VLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210 (384)
Q Consensus 132 ~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (384)
+|+++++.+..+ +..+..+++|+.|++++|.+. .++..+++.+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 97 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred EEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 999999999885 456889999999999999987 777777788999999999999999888888999999999999999
Q ss_pred ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccc
Q 043452 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQV 290 (384)
Q Consensus 211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (384)
.+.+ .+. ..+++|++|++++|.++.. ...++|+.|++++|.+.. .+.. ..++|+.|++++|.+.+.
T Consensus 176 ~l~~-~~~---~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~- 241 (390)
T 3o6n_A 176 RLTH-VDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTDT- 241 (390)
T ss_dssp CCSB-CCG---GGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE-EECC---CCSSCCEEECCSSCCCCC-
T ss_pred cCCc-ccc---ccccccceeeccccccccc-----CCCCcceEEECCCCeeee-cccc---ccccccEEECCCCCCccc-
Confidence 9884 332 3378999999999987632 345789999999999873 3322 257999999999999864
Q ss_pred cccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452 291 SPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL 370 (384)
Q Consensus 291 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 370 (384)
..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+. .++..+..+++|+.|++++|++. ..|..+..+
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l 317 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -HHHcCCCCccEEECCCCcCCC-cChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence 467889999999999999984 44455777899999999999998 45666678999999999999998 566778899
Q ss_pred CCCceEeCcCCCCC
Q 043452 371 EALEILDVSENNLS 384 (384)
Q Consensus 371 ~~L~~l~l~~~~~s 384 (384)
++|+.|++++|+|+
T Consensus 318 ~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 318 DRLENLYLDHNSIV 331 (390)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CcCCEEECCCCccc
Confidence 99999999999985
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.7e-30 Score=224.35 Aligned_cols=290 Identities=18% Similarity=0.226 Sum_probs=174.5
Q ss_pred ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452 30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 109 (384)
.+++.++++++.+. .+|..+. +++++|+++++.+++..+..+.++++|++|++++|.+++..
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 92 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--------------- 92 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC---------------
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC---------------
Confidence 36778888877776 4555443 57788888888777666667778888888888877665432
Q ss_pred hhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCc
Q 043452 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT 189 (384)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 189 (384)
+..+..+++|++|+++++.+..++..+. ++|+.|++++|.+. .++...+..+++|++|++++|.+.
T Consensus 93 -----------~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 93 -----------PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp -----------TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCC
T ss_pred -----------HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCC
Confidence 2345556677777777777666554433 67888888888776 555555667788888888877665
Q ss_pred C--cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccccccc
Q 043452 190 G--SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSA 267 (384)
Q Consensus 190 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 267 (384)
. .....+..+++|++|++++|.+. .++..+ .++|++|++++|.+++..+..+..+++
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~----------------- 217 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNN----------------- 217 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTT-----------------
T ss_pred ccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCC-----------------
Confidence 3 33444556666666666666655 333322 134555555555554433444444444
Q ss_pred chhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc--
Q 043452 268 PLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN-- 345 (384)
Q Consensus 268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-- 345 (384)
|++|++++|.+.+..+..+..+++|++|++++|.++ .++.. +..+++|++|++++|.+++..+.+|..
T Consensus 218 --------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 218 --------LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPG 287 (330)
T ss_dssp --------CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred --------CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhcCCcc
Confidence 444444444444444444455555555555555554 33322 334455666666666555444444432
Q ss_pred ----cCCccEEEccCccccc--ccccccccCCCCceEeCcCCC
Q 043452 346 ----FSSLALLTVSKNLLEG--NIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 346 ----~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~ 382 (384)
...|+.|++++|++.. +.|..|..++.++.+++++|+
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3567777787777653 456667777888888887774
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.3e-30 Score=238.06 Aligned_cols=178 Identities=29% Similarity=0.344 Sum_probs=87.2
Q ss_pred CccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEe
Q 043452 177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL 256 (384)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 256 (384)
+|++|++++|.+... + .+..+++|++|++++|.+. .++. .+++|++|++++|.+++. +. ..++|+.|++
T Consensus 216 ~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l 284 (454)
T 1jl5_A 216 SLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDV 284 (454)
T ss_dssp TCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred cccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCccccc-Cc---ccCcCCEEEC
Confidence 444444444443321 1 2344444444444444443 2221 123444444444444421 11 1244555555
Q ss_pred eccccccccccchhccCCcceEEEccCCccccccccccccc-CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452 257 SRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL-TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335 (384)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (384)
++|.+.+. + ...++|++|++++|.+.+. ... ++|++|++++|.+++ ++. .+++|+.|++++|.+
T Consensus 285 s~N~l~~l-~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 285 SENIFSGL-S----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPA----LPPRLERLIASFNHL 349 (454)
T ss_dssp CSSCCSEE-S----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCC
T ss_pred cCCccCcc-c----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-ccc----cCCcCCEEECCCCcc
Confidence 55544321 0 0124555555555555431 122 467788888887763 332 247888888888887
Q ss_pred ccccchhhhccCCccEEEccCccccc--ccccccccC-------------CCCceEeCcCCCCC
Q 043452 336 VGQIPSWIGNFSSLALLTVSKNLLEG--NIPVQLKNL-------------EALEILDVSENNLS 384 (384)
Q Consensus 336 ~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~l~l~~~~~s 384 (384)
+ .+|. .+++|+.|++++|++++ ..|..+..+ ++|+.|++++|+++
T Consensus 350 ~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 350 A-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp S-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred c-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 7 4555 47788888888888887 567777776 78888888888764
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.8e-30 Score=227.30 Aligned_cols=287 Identities=18% Similarity=0.216 Sum_probs=164.6
Q ss_pred cccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhh
Q 043452 31 NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110 (384)
Q Consensus 31 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 110 (384)
+++.++++++.+. .+|..+. ++|++|+++++.+....+..+.++++|++|++++|.+++..
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------- 94 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH---------------- 94 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----------------
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC----------------
Confidence 6777777777776 4555443 57777888777777666667777777777777777665432
Q ss_pred hcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC
Q 043452 111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG 190 (384)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 190 (384)
...+..+++|++|+++++.+..++..+. ++|++|++++|.+. .++...+..+++|++|++++|.+..
T Consensus 95 ----------~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 95 ----------EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp ----------GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred ----------HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCcccc
Confidence 1234455666667776666665554433 56777777777665 4444445566777777777766642
Q ss_pred --cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452 191 --SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP 268 (384)
Q Consensus 191 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 268 (384)
..+..+..+ +|++|++++|.+. .++..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~------ 230 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR------ 230 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC------
T ss_pred CCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC------
Confidence 333444444 6666677666665 344332 245566666666555444444555555555555555544
Q ss_pred hhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc---
Q 043452 269 LLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN--- 345 (384)
Q Consensus 269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--- 345 (384)
+..+..+..+++|++|++++|.++ .++.. +..+++|+.|++++|.+++..+.++..
T Consensus 231 -------------------~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 231 -------------------MIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp -------------------CCCTTGGGGCTTCCEEECCSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred -------------------cCChhHhhCCCCCCEEECCCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhHcccccc
Confidence 333334444445555555555544 33322 333455555555555555444444432
Q ss_pred ---cCCccEEEccCcccc--cccccccccCCCCceEeCcCC
Q 043452 346 ---FSSLALLTVSKNLLE--GNIPVQLKNLEALEILDVSEN 381 (384)
Q Consensus 346 ---~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~ 381 (384)
..+|+.|++++|++. +..+..|..+++|+.+++++|
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 245666677766655 455556666677777776665
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=8.9e-30 Score=241.23 Aligned_cols=288 Identities=22% Similarity=0.260 Sum_probs=243.5
Q ss_pred cCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCcc
Q 043452 52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLK 131 (384)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 131 (384)
.+++++.++++++.+....+..+.++++|++|++++|.+++.. ...+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~~~~l~~L~ 102 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--------------------------TYAFAYAHTIQ 102 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC--------------------------TTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC--------------------------hHHhcCCCCCC
Confidence 4689999999999988666667889999999999999877542 23567788999
Q ss_pred EEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452 132 VLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210 (384)
Q Consensus 132 ~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (384)
+|++++|.+.+++ ..+..+++|+.|++++|.++ .++..+++.+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 103 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 9999999998854 55789999999999999987 777777789999999999999999888888999999999999999
Q ss_pred ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccc
Q 043452 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQV 290 (384)
Q Consensus 211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (384)
.+.+ .+. ..+++|+.|++++|.+.+ +...++|+.|++++|.+.. .+... .++|+.|++++|.+.+
T Consensus 182 ~l~~-~~~---~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~~~---~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 182 RLTH-VDL---SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRGPV---NVELTILKLQHNNLTD-- 246 (597)
T ss_dssp CCSB-CCG---GGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-EECSC---CSCCCEEECCSSCCCC--
T ss_pred CCCC-cCh---hhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-ccccc---CCCCCEEECCCCCCCC--
Confidence 9884 332 337899999999998763 2445789999999999873 33222 4789999999999986
Q ss_pred cccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452 291 SPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL 370 (384)
Q Consensus 291 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 370 (384)
+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ ..|..+..+
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred ChhhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 35678899999999999999844 44556778999999999999984 5777778999999999999998 577778899
Q ss_pred CCCceEeCcCCCCC
Q 043452 371 EALEILDVSENNLS 384 (384)
Q Consensus 371 ~~L~~l~l~~~~~s 384 (384)
++|+.|++++|+|+
T Consensus 324 ~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 324 DRLENLYLDHNSIV 337 (597)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 99999999999985
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.1e-31 Score=255.01 Aligned_cols=377 Identities=17% Similarity=0.099 Sum_probs=211.2
Q ss_pred CCccccEEeCcCcccccccchhhhhc-ccc-ccEEecCCCc-ccc-CCchhhhcCCCCCEEEeecCcccCc----cCccc
Q 043452 3 KFKNLKALDLSYTGINGSLENQGICE-LKN-LIELNLEGNA-IEG-PLPQCLKNLTRLKVFGISSNQLSGS----LPSVI 74 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~ 74 (384)
.+++|++|+|++|.+++.. ...+.. +++ |++|++++|. +.. .++.....+++|++|++++|.+++. .+...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHH-HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4677777777777665332 333433 344 7777776664 211 1222233566777777766665433 22233
Q ss_pred cCCCCccEEECCCCcccccc---ccccCCCCCchhhhhhhcccCce-------------------------eeccCCCCC
Q 043452 75 ASLTSLQYLDLSDNYFQGIF---YLSSLGNHSNLEFFMLSLVNNTL-------------------------EVETENWLP 126 (384)
Q Consensus 75 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~-------------------------~~~~~~~~~ 126 (384)
.++++|++|+++++.+++.. ....+.++++|+.|++..+.... ......+..
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 45566666666665554111 11233445555555555432211 112233445
Q ss_pred CCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEe
Q 043452 127 TSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLD 206 (384)
Q Consensus 127 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 206 (384)
+++|+.+.++......++..+..+++|++|++++|.+++.....++..+++|++|+++++............+++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 56666666666544446666667777777777777765444445556777777777763211112222234567777777
Q ss_pred eec-----------CccCCCcchhHHHhccCCcEEEccCCcCCCccchhccC-CCCCcEEEeec----cccccc----cc
Q 043452 207 ISS-----------NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISE-MKDLRFLDLSR----NQFSGE----LS 266 (384)
Q Consensus 207 l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~----~~~~~~----~~ 266 (384)
+++ +.+++.....+...+++|++|++..+.+++.....+.. +++|+.|++++ +.+++. ..
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 773 34443444555556777777777666666544444443 67777777763 334321 12
Q ss_pred cchhccCCcceEEEccCCc--cccccccccc-ccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccch-h
Q 043452 267 APLLTGCFSLWLLDLSHNS--FCGQVSPKFM-NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS-W 342 (384)
Q Consensus 267 ~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~ 342 (384)
...+.++++|++|+++.|. +++.....+. .+++|++|++++|.+++.....++..+++|++|++++|.+++.... .
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 2334557777777776543 4443333333 3677777777777776544455556677777777777776544333 3
Q ss_pred hhccCCccEEEccCccccccccccc-ccCCCCceEeCcC
Q 043452 343 IGNFSSLALLTVSKNLLEGNIPVQL-KNLEALEILDVSE 380 (384)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~ 380 (384)
+..+++|+.|++++|++++...+.+ ..+|.+....+..
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 3567777777777777766544443 3466665554443
No 45
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=3e-32 Score=259.04 Aligned_cols=380 Identities=14% Similarity=0.100 Sum_probs=253.5
Q ss_pred CCccccEEeCcCcccccccc--------------hhhhhccccccEEecCCCccccCCchhhh-cCCCCCEEEeecC-cc
Q 043452 3 KFKNLKALDLSYTGINGSLE--------------NQGICELKNLIELNLEGNAIEGPLPQCLK-NLTRLKVFGISSN-QL 66 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~ 66 (384)
++++|++|++.++....++. ......+++|++|+++++.+++..+..+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 56889999998875322221 12245788999999999888766566665 6899999999988 44
Q ss_pred cCc-cCccccCCCCccEEECCCCccccccc---cccCCCCCchhhhhhhcccC--ceeeccCCCCCCCCccEEEccCCC-
Q 043452 67 SGS-LPSVIASLTSLQYLDLSDNYFQGIFY---LSSLGNHSNLEFFMLSLVNN--TLEVETENWLPTSQLKVLHLRNCN- 139 (384)
Q Consensus 67 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~- 139 (384)
... .+....++++|++|++++|.+++... ......+++|+.|+++.+.. ...........+++|++|+++++.
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 422 34445578999999999988665432 23344778888888886651 111111122346888889888872
Q ss_pred CCCccccccccCCCCeEeccCCcc-----------------------------CCCcHHHHhhhCCCccEEEcCCCCCcC
Q 043452 140 LNGTLGFLQKQHDLKSLDLSHNKL-----------------------------VGSFPAWLLQHNTKLEVLRLTNNSFTG 190 (384)
Q Consensus 140 ~~~~~~~~~~~~~L~~L~l~~~~~-----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~ 190 (384)
..+++..+..+++|+.|.+..+.. .......+...+++|++|++++|.++.
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 223556666677777776544311 001111222356888888888887653
Q ss_pred cc-cccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccC---------CcCCCccchhc-cCCCCCcEEEeecc
Q 043452 191 SL-QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK---------NKFEGSISSSI-SEMKDLRFLDLSRN 259 (384)
Q Consensus 191 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~ 259 (384)
.. ...+..+++|++|+++++ +.+.....+...+++|++|++.+ +.+++.....+ ..+++|+.|.+..+
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 32 222457788899988887 44445555666688899998843 33443222222 34788999988888
Q ss_pred ccccccccchhccCCcceEEEcc--C----Ccccc-----cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEE
Q 043452 260 QFSGELSAPLLTGCFSLWLLDLS--H----NSFCG-----QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVL 328 (384)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 328 (384)
.+++.....+...+++|+.|++. + +.+++ ..+..+..+++|++|++++ .+++.....+...+++|+.|
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence 88755444555568899999998 3 44442 1222356778999999977 66655555555557899999
Q ss_pred EcCCCccccccchhh-hccCCccEEEccCccccccccc-ccccCCCCceEeCcCCCCC
Q 043452 329 DISNNKLVGQIPSWI-GNFSSLALLTVSKNLLEGNIPV-QLKNLEALEILDVSENNLS 384 (384)
Q Consensus 329 ~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~s 384 (384)
++++|.+++..+.++ .++++|+.|++++|++++.... .+..+++|+.|++++|+++
T Consensus 462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 999999877666666 6799999999999998755444 3456899999999999864
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.3e-32 Score=261.37 Aligned_cols=381 Identities=11% Similarity=0.071 Sum_probs=264.5
Q ss_pred CCccccEEeCcCccccc---cc-----------chhhhhccccccEEecCCCccccCCchhhhc-CCC-CCEEEeecCcc
Q 043452 3 KFKNLKALDLSYTGING---SL-----------ENQGICELKNLIELNLEGNAIEGPLPQCLKN-LTR-LKVFGISSNQL 66 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~---~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~~ 66 (384)
++++|++|++++|.... .+ .......+++|++|+++++.+.+..+..+.+ +++ |++|++++|..
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 57889999997753210 11 1122337899999999999887666666666 455 99999998862
Q ss_pred -cC-ccCccccCCCCccEEECCCCcccccc---ccccCCCCCchhhhhhhcccCc---eeeccCCCCCCCCccEEEccCC
Q 043452 67 -SG-SLPSVIASLTSLQYLDLSDNYFQGIF---YLSSLGNHSNLEFFMLSLVNNT---LEVETENWLPTSQLKVLHLRNC 138 (384)
Q Consensus 67 -~~-~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~ 138 (384)
.. ..+....++++|++|++++|.+++.. .......+++|+.|+++.+... .......+..+++|+.|+++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 21 12333457899999999999876542 2234566788998888766553 1222333456789999999988
Q ss_pred CCCCccccccccCCCCeEeccCCccC-------------------------CCcHHHHhhhCCCccEEEcCCCCCcCccc
Q 043452 139 NLNGTLGFLQKQHDLKSLDLSHNKLV-------------------------GSFPAWLLQHNTKLEVLRLTNNSFTGSLQ 193 (384)
Q Consensus 139 ~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 193 (384)
.+.+++..+..+++|+.|.++..... ......++..+++|++|++++|.+.....
T Consensus 231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 87776666777777777777532110 11122344567888888888887653332
Q ss_pred -ccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccC-----------CcCCCccc-hhccCCCCCcEEEeeccc
Q 043452 194 -LSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK-----------NKFEGSIS-SSISEMKDLRFLDLSRNQ 260 (384)
Q Consensus 194 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~ 260 (384)
..+..+++|++|+++ +.+.+.....+...+++|++|++++ +.+++... .....+++|+.|++..+.
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 335678888888888 4444455566667788999999983 34443222 224468999999998888
Q ss_pred cccccccchhccCCcceEEEcc----CCccccc-----ccccccccCCcCeEeCCCCc--CCcccchhhhhccccceEEE
Q 043452 261 FSGELSAPLLTGCFSLWLLDLS----HNSFCGQ-----VSPKFMNLTQLGWLSLDNNN--FSGRISNGFLSSARSLQVLD 329 (384)
Q Consensus 261 ~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~~~~L~~L~ 329 (384)
+++.....+...+++|+.|++. .+.+++. .+..+..+++|++|+++.|. +++.....+...+++|+.|+
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 8755555555558899999996 4566643 33345678999999997654 66555556666689999999
Q ss_pred cCCCccccc-cchhhhccCCccEEEccCccccccc-ccccccCCCCceEeCcCCCCC
Q 043452 330 ISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEGNI-PVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 330 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~s 384 (384)
+++|.+++. .+..+.++++|+.|++++|++++.. +..+..+++|+.|++++|++|
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 999998864 4455578999999999999987543 334567999999999999986
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.8e-29 Score=230.44 Aligned_cols=330 Identities=22% Similarity=0.192 Sum_probs=186.5
Q ss_pred CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCC-------------CEEEeecCcccCcc
Q 043452 4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRL-------------KVFGISSNQLSGSL 70 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~ 70 (384)
...|++|+++++.+ +.+ |..++++++|++|++++|.+.+..|..++++.+| ++|+++++.+++ +
T Consensus 10 ~~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred cccchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 46788888888888 577 4668888888888888888877788877776654 888888887763 3
Q ss_pred CccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCC-CCccEEEccCCCCCCccccccc
Q 043452 71 PSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT-SQLKVLHLRNCNLNGTLGFLQK 149 (384)
Q Consensus 71 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~ 149 (384)
|.. .++|++|++++|.+++. + . ..++|++++++.+.... +... ++|++|++++|.+.+++ .+..
T Consensus 87 p~~---~~~L~~L~l~~n~l~~l-p-~---~~~~L~~L~l~~n~l~~------l~~~~~~L~~L~L~~n~l~~lp-~~~~ 151 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTEL-P-E---LPQSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEKLP-ELQN 151 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSSC-C-C---CCTTCCEEECCSSCCSC------CCSCCTTCCEEECCSSCCSSCC-CCTT
T ss_pred CCC---cCCCCEEEccCCcCCcc-c-c---ccCCCcEEECCCCccCc------ccCCCCCCCEEECcCCCCCCCc-ccCC
Confidence 332 36777888877777653 2 1 23566666666543321 1111 46777777777766655 4667
Q ss_pred cCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcE
Q 043452 150 QHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229 (384)
Q Consensus 150 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 229 (384)
+++|++|++++|.++ .+|. ..++|++|++++|.+... + .+..+++|++|++++|.+. .++.. .++|++
T Consensus 152 l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~ 219 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLES 219 (454)
T ss_dssp CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCE
T ss_pred CCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC-cCCCC----cCcccE
Confidence 777777777777665 3332 234677777777766653 2 4566677777777776665 23321 246666
Q ss_pred EEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccc---------------
Q 043452 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKF--------------- 294 (384)
Q Consensus 230 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------------- 294 (384)
|++++|.++ ..+ .+..+++|++|++++|.+.+ .+. .+++|++|++++|.+.+. +...
T Consensus 220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~l-~~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSE
T ss_pred EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCccccc-CcccCcCCEEECcCCccCc
Confidence 666666665 223 25566666666666666552 111 134555555555554431 1110
Q ss_pred --cccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCC
Q 043452 295 --MNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372 (384)
Q Consensus 295 --~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 372 (384)
.-.++|++|++++|.+++ +. ...++|+.|++++|.+++ +|.. +++|+.|++++|++++ .|. .+++
T Consensus 292 l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~ 358 (454)
T 1jl5_A 292 LSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQN 358 (454)
T ss_dssp ESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred ccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhh
Confidence 001345555555555542 11 112478888888887774 4443 5788899999988874 444 4788
Q ss_pred CceEeCcCCCCC
Q 043452 373 LEILDVSENNLS 384 (384)
Q Consensus 373 L~~l~l~~~~~s 384 (384)
|+.|++++|+++
T Consensus 359 L~~L~L~~N~l~ 370 (454)
T 1jl5_A 359 LKQLHVEYNPLR 370 (454)
T ss_dssp CCEEECCSSCCS
T ss_pred ccEEECCCCCCC
Confidence 999999998874
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.3e-29 Score=217.43 Aligned_cols=228 Identities=20% Similarity=0.272 Sum_probs=168.5
Q ss_pred cccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhcc
Q 043452 146 FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ 225 (384)
Q Consensus 146 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (384)
.+..+++|++|++++|.++ .+....++.+++|++|++++|.++...... .++|++|++++|.+. ..+...+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~-~~~~~~~~~l~ 145 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEIT-KVRKSVFNGLN 145 (330)
T ss_dssp TTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTCCEEECCSSCCC-BBCHHHHTTCT
T ss_pred hhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhh---cccccEEECCCCccc-ccCHhHhcCCc
Confidence 3444555555555555554 222222345555666666655555322211 157778888877777 55555555678
Q ss_pred CCcEEEccCCcCCC--ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452 226 KLVYLDMSKNKFEG--SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303 (384)
Q Consensus 226 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 303 (384)
+|++|++++|.+.. ..+..+..+++|++|++++|.+. ..+... .++|++|++++|.+.+..+..+..+++|++|
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 88888888887753 44566778899999999999887 344333 3789999999999998888889999999999
Q ss_pred eCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccccc------CCCCceEe
Q 043452 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN------LEALEILD 377 (384)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~l~ 377 (384)
++++|.++ ......+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|.. .+.|+.++
T Consensus 222 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 222 GLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp ECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred ECCCCcCc-eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 99999998 444455777899999999999998 78888999999999999999999877777743 47899999
Q ss_pred CcCCCCC
Q 043452 378 VSENNLS 384 (384)
Q Consensus 378 l~~~~~s 384 (384)
+++|+++
T Consensus 300 l~~N~~~ 306 (330)
T 1xku_A 300 LFSNPVQ 306 (330)
T ss_dssp CCSSSSC
T ss_pred eecCccc
Confidence 9999873
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.9e-29 Score=219.33 Aligned_cols=265 Identities=22% Similarity=0.296 Sum_probs=180.3
Q ss_pred CCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEE
Q 043452 55 RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLH 134 (384)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 134 (384)
+++.++++++.++ .+|..+ .++|++|++++|.+++.. ...+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~--------------------------~~~~~~l~~L~~L~ 84 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELR--------------------------KDDFKGLQHLYALV 84 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEEC--------------------------TTTTTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccC--------------------------HhHhhCCCCCcEEE
Confidence 5777777777666 445443 256777777776654331 12344455566666
Q ss_pred ccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452 135 LRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213 (384)
Q Consensus 135 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (384)
++++.+..+ +..+..+++|++|++++|.++ .++..++ ++|++|++++|.+.
T Consensus 85 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---------------------------~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---------------------------SSLVELRIHDNRIR 136 (332)
T ss_dssp CCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---------------------------TTCCEEECCSSCCC
T ss_pred CCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---------------------------ccCCEEECCCCccC
Confidence 666555552 444555555555555555544 3332211 44555555555554
Q ss_pred CCcchhHHHhccCCcEEEccCCcCCC--ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc
Q 043452 214 GRLPQNMSTILQKLVYLDMSKNKFEG--SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS 291 (384)
Q Consensus 214 ~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (384)
..+...+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+. ..+... .++|++|++++|.+.+..+
T Consensus 137 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 137 -KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp -CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCT
T ss_pred -ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCH
Confidence 3333333335566666666665542 334445555 7888888888876 333333 3689999999999988887
Q ss_pred ccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC-
Q 043452 292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL- 370 (384)
Q Consensus 292 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~- 370 (384)
..+..+++|++|++++|.++ .+.+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..|..+
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred HHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 88999999999999999998 455555778899999999999998 788889999999999999999998777777653
Q ss_pred -----CCCceEeCcCCCCC
Q 043452 371 -----EALEILDVSENNLS 384 (384)
Q Consensus 371 -----~~L~~l~l~~~~~s 384 (384)
++|+.+++++|+++
T Consensus 289 ~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCSSSCCBSEEECCSSSSC
T ss_pred cccccccccceEeecCccc
Confidence 67999999999874
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=2e-31 Score=253.36 Aligned_cols=375 Identities=16% Similarity=0.061 Sum_probs=262.9
Q ss_pred CCccccEEeCcCcccccccchhhhh-ccccccEEecCCC-ccccC-CchhhhcCCCCCEEEeecCcccCccCcc----cc
Q 043452 3 KFKNLKALDLSYTGINGSLENQGIC-ELKNLIELNLEGN-AIEGP-LPQCLKNLTRLKVFGISSNQLSGSLPSV----IA 75 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~ 75 (384)
.+++|++|++++|.+++.. ...+. .+++|++|++++| .+.+. ++..+..+++|++|++++|.+++..+.. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCBCCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcEEcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4788999999999887444 44454 7899999999998 45432 4445558999999999999876544333 34
Q ss_pred CCCCccEEECCCCc--cccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCC---------------
Q 043452 76 SLTSLQYLDLSDNY--FQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNC--------------- 138 (384)
Q Consensus 76 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------- 138 (384)
.+++|++|+++++. +..........++++|++|++..+..... ....+..+++|++|++..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 77899999999886 32222222344578888888876532211 2222334455555554332
Q ss_pred ----------------CCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc-cccCccccC
Q 043452 139 ----------------NLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL-QLSNSKLDF 201 (384)
Q Consensus 139 ----------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~ 201 (384)
....++..+..+++|+.|++++|.+++.....+...+++|++|+++++ +.+.. ......+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 111244445578999999999998775556666778999999999987 33222 222235889
Q ss_pred CceEeeec---------CccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc-CCCCCcEEEee--c----ccccc--
Q 043452 202 LHHLDISS---------NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS-EMKDLRFLDLS--R----NQFSG-- 263 (384)
Q Consensus 202 L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~-- 263 (384)
|++|++.+ +.+++.....+...+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 99999944 3455445556666799999999888888765444444 58999999999 3 34441
Q ss_pred --ccccchhccCCcceEEEccCCcccccccccccc-cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccc
Q 043452 264 --ELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN-LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP 340 (384)
Q Consensus 264 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 340 (384)
......+.++++|++|++++ .+++.....+.. +++|++|++++|.+++.....+...+++|++|++++|.+++..+
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 12223466789999999987 666665555555 88999999999999866666666778999999999999876555
Q ss_pred h-hhhccCCccEEEccCccccccccccc-ccCCCCceEeCcCC
Q 043452 341 S-WIGNFSSLALLTVSKNLLEGNIPVQL-KNLEALEILDVSEN 381 (384)
Q Consensus 341 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~ 381 (384)
. ....+++|+.|++++|+++....+.+ ..+|+|+...+.++
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 4 34568999999999999976655555 56888877666554
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.8e-29 Score=219.86 Aligned_cols=248 Identities=27% Similarity=0.389 Sum_probs=218.3
Q ss_pred CCccEEEccCCCCCC---ccccccccCCCCeEeccC-CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCc
Q 043452 128 SQLKVLHLRNCNLNG---TLGFLQKQHDLKSLDLSH-NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH 203 (384)
Q Consensus 128 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 203 (384)
.+++.|+++++.+.+ ++..+..+++|++|++++ +.+.+.+|..+ ..+++|++|++++|.+....+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999985 778899999999999995 88876777654 6899999999999999878888899999999
Q ss_pred eEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCC-CCcEEEeeccccccccccchhccCCcceEEEcc
Q 043452 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMK-DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLS 282 (384)
Q Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 282 (384)
+|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..++ +|+.|++++|.+.+..+.. +..++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 9999999998767766654 89999999999999877888888887 9999999999998554443 45565 9999999
Q ss_pred CCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccc
Q 043452 283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362 (384)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 362 (384)
+|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..|.++..+++|+.|++++|++++.
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 9999988889999999999999999999855444 56679999999999999989999999999999999999999988
Q ss_pred cccccccCCCCceEeCcCCC
Q 043452 363 IPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 363 ~~~~~~~~~~L~~l~l~~~~ 382 (384)
.|.. ..+++|+.+++++|+
T Consensus 284 ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSS
T ss_pred CCCC-ccccccChHHhcCCC
Confidence 8876 889999999999997
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=212.18 Aligned_cols=247 Identities=22% Similarity=0.235 Sum_probs=134.6
Q ss_pred EEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCcc
Q 043452 133 LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212 (384)
Q Consensus 133 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 212 (384)
.+.+++.+..+|..+. ++|++|+++++.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 3444444444443222 34555555555544 33333334455555555555555544444455555555555555555
Q ss_pred CCCcchhHHHhccCCcEEEccCCcCCCccc-hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc
Q 043452 213 TGRLPQNMSTILQKLVYLDMSKNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS 291 (384)
Q Consensus 213 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (384)
. ..+...+..+++|++|++++|.++.... ..+..+++|++|++++|..........+.++++|++|++++|.+.+..+
T Consensus 113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 4 3443333335555555555555543322 2344455555555555532113333334445555555555555554444
Q ss_pred ccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc-------------------------------ccc
Q 043452 292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG-------------------------------QIP 340 (384)
Q Consensus 292 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------------------~~~ 340 (384)
..+..+++|++|++++|.++ .++..++..+++|+.|++++|.+.+ .+|
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 45555555555555555543 3333333344555555555554432 356
Q ss_pred hhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 341 SWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
.++..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 77889999999999999999544444689999999999999985
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.5e-28 Score=212.62 Aligned_cols=248 Identities=27% Similarity=0.424 Sum_probs=154.6
Q ss_pred ccccEEecCCCcccc--CCchhhhcCCCCCEEEeec-CcccCccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452 30 KNLIELNLEGNAIEG--PLPQCLKNLTRLKVFGISS-NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE 106 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 106 (384)
.+++.|+++++.+.+ .+|..+.++++|++|++++ +.+.+..|..+.++++|++|++++|.+++..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 578888888888887 6788888888888888884 77777788888888888888888887664321
Q ss_pred hhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452 107 FFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185 (384)
Q Consensus 107 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (384)
..+..+++|++|+++++.+.+ ++..+..+++|++|++++|.++
T Consensus 119 ---------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--------------------- 162 (313)
T 1ogq_A 119 ---------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--------------------- 162 (313)
T ss_dssp ---------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---------------------
T ss_pred ---------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc---------------------
Confidence 122334444445444444442 3444444444555554444443
Q ss_pred CCCcCcccccCcccc-CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccc
Q 043452 186 NSFTGSLQLSNSKLD-FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE 264 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 264 (384)
+..+..+..++ +|++|++++|.+.+..+..+.. ++ |++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 163 ----~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 163 ----GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp ----EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred ----CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 33333334443 5555555555554334433332 33 66666666666555556666666777777777766533
Q ss_pred cccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCc
Q 043452 265 LSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNK 334 (384)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 334 (384)
.+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.++.. ..+++|+.+++++|.
T Consensus 237 ~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 237 LGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred cCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 322 445667777777777776666666777777777777777776555543 455677777777774
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.9e-28 Score=208.93 Aligned_cols=227 Identities=24% Similarity=0.282 Sum_probs=101.9
Q ss_pred CccEEEccCCCCCCccc-cccccCCCCeEeccCCccCCC--cHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceE
Q 043452 129 QLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHNKLVGS--FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL 205 (384)
Q Consensus 129 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 205 (384)
++++|+++++.+..++. .+..+++|+.|++++|.++.. .+..+. .+++|++|++++|.+.. .+..+..+++|++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 45555555555544332 234555555555555544311 122222 34555555555554442 22223444455555
Q ss_pred eeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCc
Q 043452 206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285 (384)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 285 (384)
++++|.+.+......+..+++|++|++++|.+....+..+.. +++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------l~~L~~L~l~~n~ 161 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------LSSLEVLKMAGNS 161 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-------------------------CTTCCEEECTTCE
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-------------------------CcCCCEEECCCCc
Confidence 555544442111122222444444444444444333333444 4445555555544
Q ss_pred ccc-cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc
Q 043452 286 FCG-QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP 364 (384)
Q Consensus 286 ~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 364 (384)
+.+ ..+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 443 23444444455555555555444 2222223344455555555555444434444445555555555555554444
Q ss_pred cccccCC-CCceEeCcCCCC
Q 043452 365 VQLKNLE-ALEILDVSENNL 383 (384)
Q Consensus 365 ~~~~~~~-~L~~l~l~~~~~ 383 (384)
..+..++ +|+.|++++|+|
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCE
T ss_pred HHHHhhhccCCEEEccCCCe
Confidence 4444443 455555555544
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.2e-27 Score=215.71 Aligned_cols=247 Identities=23% Similarity=0.210 Sum_probs=203.7
Q ss_pred ccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeec
Q 043452 130 LKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS 209 (384)
Q Consensus 130 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (384)
...++.++..+..++..+. ++++.|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4556666666666665433 68899999998886 45445567889999999999988877778888899999999999
Q ss_pred CccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc
Q 043452 210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289 (384)
Q Consensus 210 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 289 (384)
|.+. ..+...+..+++|++|++++|.++......+..+++|+.|++++|...+..+...+.++++|++|++++|.+.+.
T Consensus 133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9887 566555556889999999999998766677888999999999996655466666788899999999999988764
Q ss_pred ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccccc
Q 043452 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN 369 (384)
Q Consensus 290 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 369 (384)
..+..+++|++|++++|.++ .+.+..+..+++|+.|++++|.+.+..+.+|.++++|+.|++++|++++..+..|..
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred --ccccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 24678899999999999998 455566778899999999999999888889999999999999999999877778889
Q ss_pred CCCCceEeCcCCCC
Q 043452 370 LEALEILDVSENNL 383 (384)
Q Consensus 370 ~~~L~~l~l~~~~~ 383 (384)
+++|+.|++++|+|
T Consensus 289 l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEccCCCc
Confidence 99999999999986
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=214.92 Aligned_cols=247 Identities=22% Similarity=0.204 Sum_probs=197.5
Q ss_pred ccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeec
Q 043452 130 LKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS 209 (384)
Q Consensus 130 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (384)
...++..+..+..+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.+.......+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4456666666666665443 67888888888876 45545567888888888888888877777788888899999988
Q ss_pred CccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc
Q 043452 210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289 (384)
Q Consensus 210 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 289 (384)
|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|......+...+.++++|++|++++|.+...
T Consensus 122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 8887 555554555788999999998888666677888899999999986655466666778889999999999988754
Q ss_pred ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccccc
Q 043452 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN 369 (384)
Q Consensus 290 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 369 (384)
. .+..+++|++|++++|.++ .+.+..+..+++|+.|++++|.+.+..+.+|.++++|+.|+|++|++++..+..|..
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c--ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 3 4678889999999999888 455556777889999999999998888888999999999999999999877778888
Q ss_pred CCCCceEeCcCCCC
Q 043452 370 LEALEILDVSENNL 383 (384)
Q Consensus 370 ~~~L~~l~l~~~~~ 383 (384)
+++|+.|++++|+|
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 99999999999986
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.4e-27 Score=206.86 Aligned_cols=281 Identities=18% Similarity=0.158 Sum_probs=168.1
Q ss_pred ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452 28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107 (384)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 107 (384)
.|+.....+.+++.++ .+|..+. ++|++|+++++.++...+..+.++++|++|++++|.+++.
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------- 91 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-------------- 91 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE--------------
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc--------------
Confidence 4555555666666666 4555443 4677777777766654444666666666666666655432
Q ss_pred hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC
Q 043452 108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS 187 (384)
Q Consensus 108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 187 (384)
.+..+..+++|++|++++|.++ .++...++.+++|++|++++|.
T Consensus 92 -----------------------------------~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 92 -----------------------------------EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp -----------------------------------CTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCC
T ss_pred -----------------------------------CHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCC
Confidence 1223444555666666666554 4444444566666666666666
Q ss_pred CcCccc-ccCccccCCceEeeecCc-cCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccccc
Q 043452 188 FTGSLQ-LSNSKLDFLHHLDISSNS-FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL 265 (384)
Q Consensus 188 ~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 265 (384)
+..... ..+..+++|++|++++|. +. ..+...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..
T Consensus 136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~ 213 (353)
T 2z80_A 136 YKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL 213 (353)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-TH
T ss_pred CcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cc
Confidence 654433 355666677777777664 33 443333344667777777777766555666667777777777777764 44
Q ss_pred ccchhccCCcceEEEccCCccccccccccc---ccCCcCeEeCCCCcCCcccc---hhhhhccccceEEEcCCCcccccc
Q 043452 266 SAPLLTGCFSLWLLDLSHNSFCGQVSPKFM---NLTQLGWLSLDNNNFSGRIS---NGFLSSARSLQVLDISNNKLVGQI 339 (384)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~ 339 (384)
+...+..+++|++|++++|.+.+..+..+. ....++.++++++.+.+... +..+..+++|+.|++++|.++...
T Consensus 214 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~ 293 (353)
T 2z80_A 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293 (353)
T ss_dssp HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC
T ss_pred hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC
Confidence 444455567777777777776654333222 34556677777766653211 223455677888888888777333
Q ss_pred chhhhccCCccEEEccCccccccc
Q 043452 340 PSWIGNFSSLALLTVSKNLLEGNI 363 (384)
Q Consensus 340 ~~~~~~~~~L~~L~l~~~~~~~~~ 363 (384)
+..+..+++|+.|++++|++.+..
T Consensus 294 ~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHHhcCCCCCEEEeeCCCccCcC
Confidence 334577788888888888776543
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.3e-27 Score=204.58 Aligned_cols=251 Identities=22% Similarity=0.259 Sum_probs=146.9
Q ss_pred cEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhc
Q 043452 33 IELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSL 112 (384)
Q Consensus 33 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 112 (384)
+.++.+++.++ .+|..+. ++|++|+++++.++...+..+.++++|++|++++|.++....
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~----------------- 69 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC----------------- 69 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE-----------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC-----------------
Confidence 35556555555 3444332 466666666666664444445666666666666665542210
Q ss_pred ccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc
Q 043452 113 VNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL 192 (384)
Q Consensus 113 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 192 (384)
....+..+++|++|+++++.+..++..+..+++|+.|++++|.+++..+...+..+++|++|++++|.+....
T Consensus 70 -------~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 70 -------CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp -------EEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred -------cccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 0011223456666666666665555566677777777777776653222233556677777777777766555
Q ss_pred cccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhcc
Q 043452 193 QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG 272 (384)
Q Consensus 193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 272 (384)
+..+..+++|++|++++|.+.+......+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..+...+..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~ 221 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKC 221 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTT
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccC
Confidence 6666667777777777776653222222233566777777766666555556666666666666666665 233333455
Q ss_pred CCcceEEEccCCcccccccccccccC-CcCeEeCCCCcCC
Q 043452 273 CFSLWLLDLSHNSFCGQVSPKFMNLT-QLGWLSLDNNNFS 311 (384)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~ 311 (384)
+++|++|++++|.+.+..+..+..++ +|++|++++|.++
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 66666666666666655555555553 5666666666655
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-26 Score=198.56 Aligned_cols=225 Identities=18% Similarity=0.160 Sum_probs=135.5
Q ss_pred cEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452 131 KVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210 (384)
Q Consensus 131 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (384)
+.++.++..+..++..+ .++|+.|+++++.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555555555554432 356777777777665 444444456677777777777666555666666677777777776
Q ss_pred c-cCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc
Q 043452 211 S-FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289 (384)
Q Consensus 211 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 289 (384)
. +. ......+..+++|++|++++|.++...+..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+.+.
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence 5 44 333333333666777777666666555555666666666666666665 33444455566666666666666655
Q ss_pred ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 290 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
.+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+.+..+.++..+++|+.|++++|++..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 55555666666666666666652 223334455666666666666665555556666666666666666553
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.2e-27 Score=204.94 Aligned_cols=249 Identities=23% Similarity=0.212 Sum_probs=197.4
Q ss_pred CCCCccEEEccCCCCCCccccccccCCCCeEeccCCccC-CCcHHHHh------hhCCCccEEEcCCCCCcCcccccC--
Q 043452 126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLV-GSFPAWLL------QHNTKLEVLRLTNNSFTGSLQLSN-- 196 (384)
Q Consensus 126 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~-- 196 (384)
..++|++++++++.+ .++..+... |+.|+++++.+. ..++.... ..+++|++|++++|.+.+..+..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 445677777777777 555544443 888888888773 34444332 257999999999999987666655
Q ss_pred ccccCCceEeeecCccCCCcchhHHHhc-----cCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc---cc
Q 043452 197 SKLDFLHHLDISSNSFTGRLPQNMSTIL-----QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS---AP 268 (384)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~ 268 (384)
..+++|++|++++|.+.+. +..+.. + ++|++|++++|.+++..+..+..+++|++|++++|.+.+... ..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8899999999999999854 655554 4 899999999999998887889999999999999999764321 22
Q ss_pred hhccCCcceEEEccCCccccc---ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc
Q 043452 269 LLTGCFSLWLLDLSHNSFCGQ---VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345 (384)
Q Consensus 269 ~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 345 (384)
.+.++++|++|++++|.+.+. ....+..+++|++|++++|.+++..+...+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 347789999999999999842 22344577999999999999986554444556789999999999998 6676655
Q ss_pred cCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|+.|++++|++++. |. +..+++|+.|++++|+|+
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 8999999999999966 55 899999999999999986
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.3e-25 Score=194.95 Aligned_cols=233 Identities=20% Similarity=0.228 Sum_probs=137.2
Q ss_pred CCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEee
Q 043452 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI 207 (384)
Q Consensus 128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 207 (384)
++++.|+++++.+..++..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3455555555555544444444555555555555444 333322 34444555555444444 22333444444444444
Q ss_pred ecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccc
Q 043452 208 SSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC 287 (384)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (384)
++|.+.+.++..+.. .. ....+..+++|++|++++|.+. ..+.. +.++++|++|++++|.+.
T Consensus 158 ~~n~~~~~~p~~~~~-------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 158 RACPELTELPEPLAS-------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEETTCCCCCSCSEE-------EC----------CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCC
T ss_pred CCCCCccccChhHhh-------cc---------chhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCC
Confidence 444433333322110 00 0011234677777777777776 33333 556777777777777777
Q ss_pred ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccc
Q 043452 288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL 367 (384)
Q Consensus 288 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 367 (384)
+ .+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|++.+..|..+
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 4 344567777788888877777655443 35556778888888877777777777788888888888887777778888
Q ss_pred ccCCCCceEeCcCCCC
Q 043452 368 KNLEALEILDVSENNL 383 (384)
Q Consensus 368 ~~~~~L~~l~l~~~~~ 383 (384)
.++++|+.+++..+.+
T Consensus 298 ~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGSCTTCEEECCGGGS
T ss_pred hhccCceEEeCCHHHH
Confidence 8888888887776543
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.8e-25 Score=192.96 Aligned_cols=234 Identities=18% Similarity=0.185 Sum_probs=170.8
Q ss_pred CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452 4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 83 (384)
.+++++|+++++.+. .++ ..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 356777788777776 563 44666778888888877777 67777777788888888877777 667777777888888
Q ss_pred ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCcc
Q 043452 84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL 163 (384)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 163 (384)
++++|.+.+..+... . .......+..+++|++|++++|.+..++..+..+++|++|++++|.+
T Consensus 156 ~L~~n~~~~~~p~~~-~----------------~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPL-A----------------STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCS-E----------------EEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC
T ss_pred ECCCCCCccccChhH-h----------------hccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC
Confidence 887766554432110 0 01112335567888888888888887777788888888888888888
Q ss_pred CCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch
Q 043452 164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS 243 (384)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 243 (384)
+ .++.. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+.++..+.. +++|++|++++|.+.+..|.
T Consensus 219 ~-~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 219 S-ALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp C-CCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCCG
T ss_pred C-cCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhhccH
Confidence 7 45443 567888888888888887777777888888888888888777666666543 77888888888877777778
Q ss_pred hccCCCCCcEEEeecccc
Q 043452 244 SISEMKDLRFLDLSRNQF 261 (384)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~ 261 (384)
.+..+++++.+++..+.+
T Consensus 296 ~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGGGSCTTCEEECCGGGS
T ss_pred HHhhccCceEEeCCHHHH
Confidence 888888888887776554
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.4e-25 Score=192.91 Aligned_cols=251 Identities=22% Similarity=0.225 Sum_probs=195.8
Q ss_pred CCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC-CcCcccccCccccCCce
Q 043452 127 TSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS-FTGSLQLSNSKLDFLHH 204 (384)
Q Consensus 127 ~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~ 204 (384)
.+++++|+++++.+..++ ..+..+++|+.|++++|.++ .+....+..+++|++|++++|. +....+..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 468999999999988854 56888999999999999886 4444445688999999999997 77666778888999999
Q ss_pred EeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCC
Q 043452 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284 (384)
Q Consensus 205 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 284 (384)
|++++|.+. ..+...+..+++|++|++++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|++++|
T Consensus 110 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 110 LHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCC
Confidence 999999988 444444445889999999999998777777888899999999999887 555556777899999999999
Q ss_pred cccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc
Q 043452 285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP 364 (384)
Q Consensus 285 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 364 (384)
.+.+..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+...-+.. .....++.+..+.+.+....|
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEES
T ss_pred cccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCc
Confidence 998888888888999999999999988 566566777899999999999876432211 112234555567777777777
Q ss_pred ccccc--CCCCceEeCcCCC
Q 043452 365 VQLKN--LEALEILDVSENN 382 (384)
Q Consensus 365 ~~~~~--~~~L~~l~l~~~~ 382 (384)
..+.. +..++..++.||+
T Consensus 266 ~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 266 QRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp GGGTTCBGGGSCGGGSCCC-
T ss_pred hHhCCcChhhcCHHHhccCC
Confidence 77644 5677777788774
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-26 Score=199.72 Aligned_cols=260 Identities=20% Similarity=0.240 Sum_probs=143.0
Q ss_pred ccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECC
Q 043452 7 LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 86 (384)
++..+++.+.+. ......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444555555554 3334455566677777777777776555667777777777777777664332 6667777777777
Q ss_pred CCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCC
Q 043452 87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGS 166 (384)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 166 (384)
+|.+++.. ..++|+.|++++|.+++
T Consensus 89 ~n~l~~l~------------------------------------------------------~~~~L~~L~l~~n~l~~- 113 (317)
T 3o53_A 89 NNYVQELL------------------------------------------------------VGPSIETLHAANNNISR- 113 (317)
T ss_dssp SSEEEEEE------------------------------------------------------ECTTCCEEECCSSCCSE-
T ss_pred CCcccccc------------------------------------------------------CCCCcCEEECCCCccCC-
Confidence 66554321 11344444444444431
Q ss_pred cHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc
Q 043452 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS 246 (384)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 246 (384)
++. ..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+...+++|++|++++|.++... ...
T Consensus 114 ~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~ 188 (317)
T 3o53_A 114 VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQV 188 (317)
T ss_dssp EEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCC
T ss_pred cCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--ccc
Confidence 111 123556666666666665555555666666666666666664334444444566777777776665331 122
Q ss_pred CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccce
Q 043452 247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326 (384)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 326 (384)
.+++|++|++++|.+.+ .+.. +..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.....+.++..++.|+
T Consensus 189 ~l~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred ccccCCEEECCCCcCCc-chhh-hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 35666666666666652 2222 3445566666666665552 3444455555556666555554223333444445555
Q ss_pred EEEcCC
Q 043452 327 VLDISN 332 (384)
Q Consensus 327 ~L~l~~ 332 (384)
.+++.+
T Consensus 266 ~l~l~~ 271 (317)
T 3o53_A 266 TVAKQT 271 (317)
T ss_dssp HHHHHH
T ss_pred EEECCC
Confidence 555543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-25 Score=194.05 Aligned_cols=218 Identities=24% Similarity=0.219 Sum_probs=105.3
Q ss_pred cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCC
Q 043452 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227 (384)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 227 (384)
..+++|++|++++|.++ .++...++.+++|++|++++|.+....+ +..+++|++|++++|.+. ..+. .++|
T Consensus 31 ~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L 101 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSI 101 (317)
T ss_dssp TTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEE-----CTTC
T ss_pred ccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccC-----CCCc
Confidence 33445555555555554 2222233455555555555555543322 445555555555555544 2221 2455
Q ss_pred cEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccc-ccCCcCeEeCC
Q 043452 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM-NLTQLGWLSLD 306 (384)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~ 306 (384)
++|++++|.+++..+. .+++|++|++++|.+. ......+..+++|++|++++|.+.+..+..+. .+++|++|+++
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 5555555555433221 2345555555555554 22223334455555555555555544443332 34555555555
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
+|.+++. +.. ..+++|++|++++|.+.+ ++..+..+++|+.|++++|+++ ..|..+..+++|+.|++++|++
T Consensus 178 ~N~l~~~-~~~--~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 178 YNFIYDV-KGQ--VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp TSCCCEE-ECC--CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred CCcCccc-ccc--cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 5555422 111 123555555555555552 3333555555555555555555 3344455555555555555554
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=198.76 Aligned_cols=226 Identities=23% Similarity=0.244 Sum_probs=102.6
Q ss_pred ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452 30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 109 (384)
++++.|++++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|.++...
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 128 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--------------- 128 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC---------------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC---------------
Confidence 45666666666665544555666666666666666655555555666666666666666554331
Q ss_pred hhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF 188 (384)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 188 (384)
...+..+++|++|+++++.+..++ ..+..+++|+.|+++++.....++...+..+++|++|++++|.+
T Consensus 129 -----------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 129 -----------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp -----------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred -----------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 122333444444444444444322 23344444444444443322233333334444444444444444
Q ss_pred cCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452 189 TGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP 268 (384)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 268 (384)
+... .+..+++|++|++++|.+. ......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++ ..+..
T Consensus 198 ~~~~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~ 273 (440)
T 3zyj_A 198 REIP--NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273 (440)
T ss_dssp SSCC--CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTT
T ss_pred cccc--ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChh
Confidence 3221 2334444444444444443 222222222444444444444444333344444444444444444443 23333
Q ss_pred hhccCCcceEEEccCCc
Q 043452 269 LLTGCFSLWLLDLSHNS 285 (384)
Q Consensus 269 ~~~~~~~L~~L~l~~~~ 285 (384)
.+..+++|+.|++++|+
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 33344444444444443
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.4e-24 Score=198.92 Aligned_cols=226 Identities=24% Similarity=0.221 Sum_probs=107.3
Q ss_pred ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452 30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 109 (384)
+++++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|.++...
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 139 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP--------------- 139 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC---------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC---------------
Confidence 45566666666555544555556666666666666555555555555666666666655554331
Q ss_pred hhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF 188 (384)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 188 (384)
...+..+++|++|++++|.+..++ ..+..+++|+.|+++++...+.++...+..+++|++|++++|.+
T Consensus 140 -----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 140 -----------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp -----------TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred -----------hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 122334444555555544444422 23444455555555543332234433344445555555555444
Q ss_pred cCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452 189 TGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP 268 (384)
Q Consensus 189 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 268 (384)
.... .+..+++|++|++++|.+. ......+..+++|+.|++++|.++...+..+..+++|+.|++++|.+. ..+..
T Consensus 209 ~~~~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~ 284 (452)
T 3zyi_A 209 KDMP--NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD 284 (452)
T ss_dssp SSCC--CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred cccc--cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChH
Confidence 4321 2334444555555554444 222222222444555555554444444444444445555555554444 33333
Q ss_pred hhccCCcceEEEccCCc
Q 043452 269 LLTGCFSLWLLDLSHNS 285 (384)
Q Consensus 269 ~~~~~~~L~~L~l~~~~ 285 (384)
.+..+++|+.|++++|+
T Consensus 285 ~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SSTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEccCCC
Confidence 33444444555544443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.8e-24 Score=202.06 Aligned_cols=265 Identities=22% Similarity=0.228 Sum_probs=142.8
Q ss_pred ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452 30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 109 (384)
.+++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++...
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~-------------- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV-------------- 98 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC--------------
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC--------------
Confidence 45777777777776 5555554 67777777777766 3443 45777777777776654310
Q ss_pred hhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCc
Q 043452 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT 189 (384)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 189 (384)
.+++|++|++++|.+..++. .+++|+.|++++|.++ .+|. .+++|++|++++|.+.
T Consensus 99 ----------------~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 99 ----------------LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA 154 (622)
T ss_dssp ----------------CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred ----------------CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCC
Confidence 23455555555555544433 3455555555555554 2332 2355555555555554
Q ss_pred CcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccch
Q 043452 190 GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269 (384)
Q Consensus 190 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 269 (384)
.... .+++|+.|++++|.+. .++ ..+++|+.|++++|.+++.. . ..++|+.|++++|.+. ..+
T Consensus 155 ~l~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~-~l~--- 217 (622)
T 3g06_A 155 SLPA----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLT-SLP--- 217 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-SCC---
T ss_pred CcCC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCccc-ccC---
Confidence 3211 2345555566555555 333 22455666666666555321 1 1255666666666554 211
Q ss_pred hccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCc
Q 043452 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL 349 (384)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 349 (384)
..+++|+.|++++|.+.+. + ..+++|+.|++++|.++ .++. .+++|+.|++++|.++ .+|..+.++++|
T Consensus 218 -~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 218 -ALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred -CCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 1235566666666655542 2 23355666666666655 3332 3355666666666665 445556666666
Q ss_pred cEEEccCccccccccccc
Q 043452 350 ALLTVSKNLLEGNIPVQL 367 (384)
Q Consensus 350 ~~L~l~~~~~~~~~~~~~ 367 (384)
+.|++++|++.+..+..+
T Consensus 287 ~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CEEECCSCCCCHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHH
Confidence 666666666655544443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.7e-23 Score=196.65 Aligned_cols=258 Identities=23% Similarity=0.251 Sum_probs=211.2
Q ss_pred CCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEE
Q 043452 54 TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL 133 (384)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 133 (384)
.+++.|+++++.++ .+|..+. ++|++|++++|.++.... .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~------------------------------~l~~L~~L 86 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA------------------------------LPPELRTL 86 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC------------------------------CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC------------------------------cCCCCCEE
Confidence 46999999999988 6666554 899999999998774310 24689999
Q ss_pred EccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452 134 HLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213 (384)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (384)
++++|.+..++. .+++|+.|++++|.++ .++. .+++|+.|++++|.++.... .+++|++|++++|.+.
T Consensus 87 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 87 EVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA 154 (622)
T ss_dssp EECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred EcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCC
Confidence 999999888776 7799999999999887 4554 56899999999998885433 2489999999999987
Q ss_pred CCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccc
Q 043452 214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293 (384)
Q Consensus 214 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (384)
.++. .+++|+.|++++|.++... ..+++|+.|++++|.+.+ .+. ..++|+.|++++|.+.... .
T Consensus 155 -~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l~-~- 218 (622)
T 3g06_A 155 -SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSLP-A- 218 (622)
T ss_dssp -CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCC-C-
T ss_pred -CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccccC-C-
Confidence 4443 3578999999999998543 456899999999999873 222 3589999999999988533 2
Q ss_pred ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCC
Q 043452 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL 373 (384)
Q Consensus 294 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 373 (384)
.+++|+.|++++|.+++ ++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|
T Consensus 219 --~~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred --CCCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 24789999999999983 44 34589999999999998 5555 6789999999999999 678889999999
Q ss_pred ceEeCcCCCCC
Q 043452 374 EILDVSENNLS 384 (384)
Q Consensus 374 ~~l~l~~~~~s 384 (384)
+.|++++|+|+
T Consensus 287 ~~L~L~~N~l~ 297 (622)
T 3g06_A 287 TTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSCCCC
T ss_pred CEEEecCCCCC
Confidence 99999999985
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=5.3e-24 Score=182.21 Aligned_cols=207 Identities=21% Similarity=0.203 Sum_probs=127.3
Q ss_pred CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL 230 (384)
Q Consensus 151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 230 (384)
++|+.|+++++.++ .++...+..+++|++|++++|.+.......+..+++|++|++++|.+. ..+...+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence 46777777777765 444434456677777777777776655556667777777777777766 3333333346677777
Q ss_pred EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcC----eEeCC
Q 043452 231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG----WLSLD 306 (384)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~l~l~ 306 (384)
++++|.+....+..+..+++|++|++++|.+.+......+.++++|++|++++|.+.+..+..+..++.|+ .++++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 77777766555545666677777777777665322233455566677777777666655555555555555 56666
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+|.++ .++...+.. .+|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 186 ~n~l~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 186 LNPMN-FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SSCCC-EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCccc-ccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 66665 333333322 366666666666665444555666666666666666653
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.9e-24 Score=199.20 Aligned_cols=237 Identities=20% Similarity=0.162 Sum_probs=170.4
Q ss_pred CCCCccEEEccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCce
Q 043452 126 PTSQLKVLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHH 204 (384)
Q Consensus 126 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 204 (384)
.+++|++|+++++.+.++ +..+..+++|+.|++++|.+++..+ +..+++|++|++++|.++... ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 455788888888888774 4577888888888888888764444 567788888888888776433 2377888
Q ss_pred EeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCC
Q 043452 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284 (384)
Q Consensus 205 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 284 (384)
|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+...+++|++|++++|
T Consensus 104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 88888887743332 25678888888888877767677777888888888888775555555556788888888888
Q ss_pred cccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc-ccc
Q 043452 285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE-GNI 363 (384)
Q Consensus 285 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~ 363 (384)
.+.+..+ ...+++|+.|++++|.+++ +++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcch
Confidence 8775533 2347778888888888873 3333 556678888888888877 46777777788888888888876 445
Q ss_pred ccccccCCCCceEeCc
Q 043452 364 PVQLKNLEALEILDVS 379 (384)
Q Consensus 364 ~~~~~~~~~L~~l~l~ 379 (384)
|..+..++.|+.++++
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 5566667777666654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.3e-23 Score=177.45 Aligned_cols=204 Identities=24% Similarity=0.307 Sum_probs=146.3
Q ss_pred CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL 230 (384)
Q Consensus 151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 230 (384)
...+.++++++.++ .+|..+ .+++++|+++++.+.......+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence 35778888888776 566432 367888888888888776667788888888888888877 5665555557788888
Q ss_pred EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcC
Q 043452 231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF 310 (384)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 310 (384)
++++|.++...+..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 88888877666666677778888888887776 44445556677777777777777766665666777777777777777
Q ss_pred CcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 311 SGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+ .++...+..+++|+.|++++|.+++..+.++..+++|+.|++++|++..
T Consensus 170 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 170 K-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp S-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred c-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 6 4444455566777777777777775555566777777777777777653
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-23 Score=193.34 Aligned_cols=220 Identities=24% Similarity=0.206 Sum_probs=184.3
Q ss_pred ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226 (384)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 226 (384)
...+++|+.|++++|.+++ ++...+..+++|++|++++|.+++..+ +..+++|++|++++|.+. ..+. .++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~ 100 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPS 100 (487)
T ss_dssp STTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTT
T ss_pred cccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCC
Confidence 3345589999999999984 444445789999999999999886554 889999999999999987 4442 379
Q ss_pred CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccc-ccCCcCeEeC
Q 043452 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM-NLTQLGWLSL 305 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l 305 (384)
|++|++++|.+++..+. .+++|+.|++++|.+.+ .....+..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 99999999999866543 46899999999999984 3444557799999999999999988887776 7899999999
Q ss_pred CCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|.+++. +. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|+++
T Consensus 177 s~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 177 QYNFIYDV-KG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTSCCCEE-EC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCccccc-cc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 99999844 32 2247899999999999995 55568999999999999999994 6778999999999999999975
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=9e-24 Score=187.83 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=156.2
Q ss_pred EEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHH---HHhhhCC-CccEEEcCCCCCcCcccccCccc-----cCC
Q 043452 133 LHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPA---WLLQHNT-KLEVLRLTNNSFTGSLQLSNSKL-----DFL 202 (384)
Q Consensus 133 L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 202 (384)
+.++.+.+.+ ++..+...++|++|++++|.+++..+. ..+..++ +|++|++++|.+.......+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455666665 444455555578888887777643331 3334556 78888888777776555455443 778
Q ss_pred ceEeeecCccCCCcchhHHHh---c-cCCcEEEccCCcCCCccchhc----cC-CCCCcEEEeeccccccccccc---hh
Q 043452 203 HHLDISSNSFTGRLPQNMSTI---L-QKLVYLDMSKNKFEGSISSSI----SE-MKDLRFLDLSRNQFSGELSAP---LL 270 (384)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~~---~~ 270 (384)
++|++++|.+.+..+..+... + ++|++|++++|.+++.....+ .. .++|++|++++|.+.+..... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 888888887775555444432 2 678888888887765444332 23 357888888888776433222 22
Q ss_pred ccCC-cceEEEccCCccccccccccc----cc-CCcCeEeCCCCcCCcccc----hhhhhccccceEEEcCCCccccccc
Q 043452 271 TGCF-SLWLLDLSHNSFCGQVSPKFM----NL-TQLGWLSLDNNNFSGRIS----NGFLSSARSLQVLDISNNKLVGQIP 340 (384)
Q Consensus 271 ~~~~-~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~ 340 (384)
...+ +|++|++++|.+.+..+..+. .+ ++|++|++++|.+++... ..+...+++|++|++++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3343 788888888877765554333 34 478888888887764322 2222223578888888887775544
Q ss_pred ----hhhhccCCccEEEccCccccccc-------ccccccCCCCceEeCcCCCCC
Q 043452 341 ----SWIGNFSSLALLTVSKNLLEGNI-------PVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 341 ----~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~L~~l~l~~~~~s 384 (384)
..+..+++|+.|++++|++.++. +..+..+++|+.||+++|++.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 33355677888888888744332 234566777888888888763
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=9.5e-25 Score=190.06 Aligned_cols=201 Identities=23% Similarity=0.229 Sum_probs=113.3
Q ss_pred CccEEEccCCCCCC-ccccc--cccCCCCeEeccCCccCCCcHHHHhhhC-----CCccEEEcCCCCCcCcccccCcccc
Q 043452 129 QLKVLHLRNCNLNG-TLGFL--QKQHDLKSLDLSHNKLVGSFPAWLLQHN-----TKLEVLRLTNNSFTGSLQLSNSKLD 200 (384)
Q Consensus 129 ~L~~L~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (384)
+|++|+++++.+.+ .+..+ ..+++|+.|++++|.+++. |..+ ..+ ++|++|++++|.+....+..+..++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 44444444444433 33322 4555666666666655533 3222 222 6666666666666655556666666
Q ss_pred CCceEeeecCccCCCc--chhH-HHhccCCcEEEccCCcCCCc---cchhccCCCCCcEEEeeccccccccccchhccCC
Q 043452 201 FLHHLDISSNSFTGRL--PQNM-STILQKLVYLDMSKNKFEGS---ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF 274 (384)
Q Consensus 201 ~L~~L~l~~~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 274 (384)
+|++|++++|.+.+.. +..+ +..+++|++|++++|.++.. ....+..+++|++|++++|.+.+..+...+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 6666666666654221 1111 13356677777777766632 1123345567777777777766444334444566
Q ss_pred cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452 275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337 (384)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (384)
+|++|++++|.++ ..|..+. ++|++|++++|.+++. +. +..+++|++|++++|.+++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCC
Confidence 7777777777766 3344433 6677777777777633 32 5556777777777776653
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3.1e-24 Score=192.69 Aligned_cols=240 Identities=21% Similarity=0.243 Sum_probs=142.7
Q ss_pred CCCCCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCcc---CCCcHHHH------hhhCCCccEEEcCCCCCc
Q 043452 124 WLPTSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKL---VGSFPAWL------LQHNTKLEVLRLTNNSFT 189 (384)
Q Consensus 124 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~------~~~~~~L~~L~l~~~~~~ 189 (384)
+..+++|++|+++++.+.. ++..+..+++|+.|++++|.+ .+.+|..+ +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4455677777777776655 223455677777777777533 33334333 346677777777777766
Q ss_pred C----cccccCccccCCceEeeecCccCCCcchhHHHh---c---------cCCcEEEccCCcCCCc-cc---hhccCCC
Q 043452 190 G----SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI---L---------QKLVYLDMSKNKFEGS-IS---SSISEMK 249 (384)
Q Consensus 190 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~---------~~L~~L~l~~~~~~~~-~~---~~~~~~~ 249 (384)
. ..+..+..+++|++|++++|.++...+..+... + ++|++|++++|.++.. .+ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 234455666777777777777653333333322 2 6777777777776532 22 2445566
Q ss_pred CCcEEEeecccccccc----ccchhccCCcceEEEccCCccc----ccccccccccCCcCeEeCCCCcCCcccch---hh
Q 043452 250 DLRFLDLSRNQFSGEL----SAPLLTGCFSLWLLDLSHNSFC----GQVSPKFMNLTQLGWLSLDNNNFSGRISN---GF 318 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~~ 318 (384)
+|++|++++|.+.... ....+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++.... ..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 7777777777665221 1114455677777777777664 33445566667777777777776633221 11
Q ss_pred hh--ccccceEEEcCCCcccc----ccchhh-hccCCccEEEccCccccccc
Q 043452 319 LS--SARSLQVLDISNNKLVG----QIPSWI-GNFSSLALLTVSKNLLEGNI 363 (384)
Q Consensus 319 ~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 363 (384)
+. .+++|+.|++++|.+.+ .+|..+ .++++|+.|++++|++++..
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 21 15667777777777665 355555 45677777777777776544
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=8.4e-23 Score=174.72 Aligned_cols=205 Identities=20% Similarity=0.154 Sum_probs=118.1
Q ss_pred CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD 255 (384)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 255 (384)
+++++|+++++.++......+..+++|++|++++|.+. ..+...+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45666666666666555555666666666666666665 33333333456666666666666655555566666666666
Q ss_pred eeccccccccccchhccCCcceEEEccCCccccc-ccccccccCCcCeEeCCCCcCCcccchhhhhccccce----EEEc
Q 043452 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ-VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ----VLDI 330 (384)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~----~L~l 330 (384)
+++|.+. ......+.++++|++|++++|.+.+. .+..+..+++|++|++++|.++ .++...+..++.|+ .|++
T Consensus 107 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccceeeec
Confidence 6666665 22222345566666666666666543 3555666666666666666665 23323333334444 6666
Q ss_pred CCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452 331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
++|.+.+..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|+|+
T Consensus 185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66666643333333 335666666666666555555566666666666666653
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5.4e-23 Score=181.23 Aligned_cols=247 Identities=17% Similarity=0.175 Sum_probs=143.9
Q ss_pred CccEEEccCCCCCCcccccccc--CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc-ccccCccccCCceE
Q 043452 129 QLKVLHLRNCNLNGTLGFLQKQ--HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS-LQLSNSKLDFLHHL 205 (384)
Q Consensus 129 ~L~~L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 205 (384)
.++.++++++.+. +..+..+ ++++.+++.++.+.+..+. ...+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4667777666554 2334444 6677777777766544333 22567777777777766543 44455666777777
Q ss_pred eeecCccCCCcchhHHHhccCCcEEEccCC-cCCCc-cchhccCCCCCcEEEeecc-ccccccccchhccCC-cceEEEc
Q 043452 206 DISSNSFTGRLPQNMSTILQKLVYLDMSKN-KFEGS-ISSSISEMKDLRFLDLSRN-QFSGELSAPLLTGCF-SLWLLDL 281 (384)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l 281 (384)
++++|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+++......+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 77777666444444433 677777777777 45532 3444566677777777777 665333344455666 7777777
Q ss_pred cCC--ccc-ccccccccccCCcCeEeCCCCc-CCcccchhhhhccccceEEEcCCC-ccccccchhhhccCCccEEEccC
Q 043452 282 SHN--SFC-GQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIGNFSSLALLTVSK 356 (384)
Q Consensus 282 ~~~--~~~-~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~ 356 (384)
++| .++ ...+..+..+++|+.|++++|. +++.... .+..+++|++|++++| .+.+.....+..+++|+.|++++
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 777 343 2334455566777777777776 4433333 3445577777777777 34433344566677777777777
Q ss_pred cccccccccccccCCCCceEeCcCCCCC
Q 043452 357 NLLEGNIPVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~L~~l~l~~~~~s 384 (384)
| +++.....+. .+++.|++++|.++
T Consensus 282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 282 I-VPDGTLQLLK--EALPHLQINCSHFT 306 (336)
T ss_dssp S-SCTTCHHHHH--HHSTTSEESCCCSC
T ss_pred c-cCHHHHHHHH--hhCcceEEecccCc
Confidence 7 3332222221 12444446666654
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=6e-24 Score=190.84 Aligned_cols=240 Identities=19% Similarity=0.232 Sum_probs=149.7
Q ss_pred ccccccccCCCCeEeccCCccCCCcHHHH---hhhCCCccEEEcCCCCCc---Cccccc-------CccccCCceEeeec
Q 043452 143 TLGFLQKQHDLKSLDLSHNKLVGSFPAWL---LQHNTKLEVLRLTNNSFT---GSLQLS-------NSKLDFLHHLDISS 209 (384)
Q Consensus 143 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~~ 209 (384)
+...+..+++|+.|++++|.+.+..+..+ +..+++|++|+++++.+. ...+.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55566667777888887777764433332 335677778877775433 121222 25667778888877
Q ss_pred CccCCC----cchhHHHhccCCcEEEccCCcCCCccchhc----cCC---------CCCcEEEeecccccccccc---ch
Q 043452 210 NSFTGR----LPQNMSTILQKLVYLDMSKNKFEGSISSSI----SEM---------KDLRFLDLSRNQFSGELSA---PL 269 (384)
Q Consensus 210 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~~~~~~~~---~~ 269 (384)
|.+... ++..+ ..+++|++|++++|.++...+..+ ..+ ++|++|++++|.+.+.... ..
T Consensus 104 n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777643 22233 336778888887777753322222 222 7778888887777532222 34
Q ss_pred hccCCcceEEEccCCccccc-----ccccccccCCcCeEeCCCCcCCc----ccchhhhhccccceEEEcCCCccccc--
Q 043452 270 LTGCFSLWLLDLSHNSFCGQ-----VSPKFMNLTQLGWLSLDNNNFSG----RISNGFLSSARSLQVLDISNNKLVGQ-- 338 (384)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~-- 338 (384)
+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++ .++ ..+..+++|+.|++++|.+.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCCCchhhH
Confidence 45677788888877777632 22256667778888887777752 222 2345567778888887777654
Q ss_pred --cchhhhc--cCCccEEEccCccccc----cccccc-ccCCCCceEeCcCCCCC
Q 043452 339 --IPSWIGN--FSSLALLTVSKNLLEG----NIPVQL-KNLEALEILDVSENNLS 384 (384)
Q Consensus 339 --~~~~~~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~l~l~~~~~s 384 (384)
++.++.. +++|+.|++++|++++ ..+..+ .++++|+.|++++|+|+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 3445533 7778888888887775 355555 55778888888877764
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.5e-22 Score=172.44 Aligned_cols=202 Identities=26% Similarity=0.320 Sum_probs=169.3
Q ss_pred CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452 129 QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS 208 (384)
Q Consensus 129 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 208 (384)
+.+.++++++.+..++..+. ++++.|+++++.+. .++...+..+++|++|++++|.++......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57789999888888776543 68999999999887 5555556788999999999999887777777889999999999
Q ss_pred cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452 209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288 (384)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (384)
+|.+. ..+...+..+++|++|++++|.++...+..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+..
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcE
Confidence 99988 566665566889999999999998877777888999999999999987 5556667789999999999999988
Q ss_pred cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 289 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 77777888999999999999988 566666777899999999998764
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.2e-23 Score=183.69 Aligned_cols=238 Identities=18% Similarity=0.173 Sum_probs=180.5
Q ss_pred CCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEee
Q 043452 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI 207 (384)
Q Consensus 128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 207 (384)
++++.++++++.+.+....+..+++|++|++++|.+++......+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 57888888888877755556678999999999998765434455678899999999999887666777778999999999
Q ss_pred ecC-ccCCCcchhHHHhccCCcEEEccCC-cCCCc-cchhccCCC-CCcEEEeecc--ccccccccchhccCCcceEEEc
Q 043452 208 SSN-SFTGRLPQNMSTILQKLVYLDMSKN-KFEGS-ISSSISEMK-DLRFLDLSRN--QFSGELSAPLLTGCFSLWLLDL 281 (384)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l 281 (384)
++| .+++.........+++|++|++++| .+++. .+..+..++ +|++|++++| .+++......+.++++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 998 5664445555666899999999999 88754 456677888 9999999999 4543333445667999999999
Q ss_pred cCCc-ccccccccccccCCcCeEeCCCCc-CCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccc
Q 043452 282 SHNS-FCGQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL 359 (384)
Q Consensus 282 ~~~~-~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 359 (384)
++|. +++..+..+..+++|++|++++|. +++.. ...+..+++|++|++++| +.+.....+. ++++.|++++|++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 9998 777777788889999999999985 33221 123566899999999999 5544334333 2356666899999
Q ss_pred cccccccccc
Q 043452 360 EGNIPVQLKN 369 (384)
Q Consensus 360 ~~~~~~~~~~ 369 (384)
++..|..+..
T Consensus 306 ~~~~~~~~~~ 315 (336)
T 2ast_B 306 TTIARPTIGN 315 (336)
T ss_dssp CCTTCSSCSS
T ss_pred ccccCCcccc
Confidence 9887776654
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.9e-22 Score=169.73 Aligned_cols=203 Identities=23% Similarity=0.243 Sum_probs=115.0
Q ss_pred ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226 (384)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 226 (384)
+..+++++.+++.++.++ .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+. ..+.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 456677777777777665 555432 256777777777776655566666677777777776665 23222 23556
Q ss_pred CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD 306 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 306 (384)
|++|++++|.++ ..+..+..+++|+.|++++|.++ ..+...+.++++|++|++++|.+....+..+..+++|+.|+++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 666666666665 33344455556666666666555 3333444455555555555555555444445555555555555
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
+|.++ .++..++..+++|+.|++++|.+. .+|..+..+.+|+.|++++|++.
T Consensus 157 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55555 444444444555555555555555 44444444555555555555544
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=175.07 Aligned_cols=229 Identities=18% Similarity=0.153 Sum_probs=175.8
Q ss_pred CCCCeEeccCCccCCCcHHHH--hhhCCCccEEEcCCCCCcCcccccC--ccccCCceEeeecCccCCCcch---hHHHh
Q 043452 151 HDLKSLDLSHNKLVGSFPAWL--LQHNTKLEVLRLTNNSFTGSLQLSN--SKLDFLHHLDISSNSFTGRLPQ---NMSTI 223 (384)
Q Consensus 151 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 223 (384)
..++.+.+.++.+++.....+ ....++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+. .....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356778887776643222221 1245779999999999987777777 8899999999999999854331 11124
Q ss_pred ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc---cchhccCCcceEEEccCCcccccccc---ccccc
Q 043452 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS---APLLTGCFSLWLLDLSHNSFCGQVSP---KFMNL 297 (384)
Q Consensus 224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 297 (384)
+++|++|++++|.+....+..+..+++|++|++++|.+.+... ...+..+++|++|++++|.++..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 7899999999999988888888999999999999999764321 23346789999999999999743221 34678
Q ss_pred CCcCeEeCCCCcCCcccchhhhhc--cccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCce
Q 043452 298 TQLGWLSLDNNNFSGRISNGFLSS--ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI 375 (384)
Q Consensus 298 ~~L~~l~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 375 (384)
++|++|++++|.+++..+..+... +++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999986544433222 379999999999999 6676653 8999999999999854 33 678999999
Q ss_pred EeCcCCCCC
Q 043452 376 LDVSENNLS 384 (384)
Q Consensus 376 l~l~~~~~s 384 (384)
|++++|+|+
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 999999986
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.8e-22 Score=179.47 Aligned_cols=262 Identities=17% Similarity=0.126 Sum_probs=149.3
Q ss_pred EecCCCccccCCchhhhcCCCCCEEEeecCcccCccC----ccccCCC-CccEEECCCCccccccccccCCCCCchhhhh
Q 043452 35 LNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLP----SVIASLT-SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109 (384)
Q Consensus 35 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 109 (384)
..++++.+.+..+..+...++|++|++++|.+.+..+ ..+.+++ +|++|++++|.+++..+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------------- 69 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD------------- 69 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-------------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-------------
Confidence 4555555554444444444446666666666654444 4455555 566666665554432100
Q ss_pred hhcccCceeeccCCCCCCCCccEEEccCCCCCCcccccccc-CCCCeEeccCCccCCCcHHHHhh---hC-CCccEEEcC
Q 043452 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ-HDLKSLDLSHNKLVGSFPAWLLQ---HN-TKLEVLRLT 184 (384)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~ 184 (384)
.+...+... ++|++|++++|.+++..+..+.. .. ++|++|+++
T Consensus 70 --------------------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 70 --------------------------------ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp --------------------------------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred --------------------------------HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc
Confidence 011222222 78889999888887555544332 33 788888888
Q ss_pred CCCCcCcccccCc----c-ccCCceEeeecCccCCCcchhHHHh---c-cCCcEEEccCCcCCCccch----hccCC-CC
Q 043452 185 NNSFTGSLQLSNS----K-LDFLHHLDISSNSFTGRLPQNMSTI---L-QKLVYLDMSKNKFEGSISS----SISEM-KD 250 (384)
Q Consensus 185 ~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~----~~~~~-~~ 250 (384)
+|.+.......+. . .++|++|++++|.+.+.....+... . ++|++|++++|.+++..+. .+..+ ++
T Consensus 118 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 197 (362)
T 3goz_A 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197 (362)
T ss_dssp SSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCC
Confidence 8887755443332 2 3578888888888775554444332 2 3788888888877654432 33344 47
Q ss_pred CcEEEeecccccccccc----chhccCCcceEEEccCCccccccc----ccccccCCcCeEeCCCCcCCcccch------
Q 043452 251 LRFLDLSRNQFSGELSA----PLLTGCFSLWLLDLSHNSFCGQVS----PKFMNLTQLGWLSLDNNNFSGRISN------ 316 (384)
Q Consensus 251 L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~------ 316 (384)
|++|++++|.+.+.... .+....++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+....
T Consensus 198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 88888888777642221 122224577777777777765443 2234556777777777764322111
Q ss_pred hhhhccccceEEEcCCCccccccch
Q 043452 317 GFLSSARSLQVLDISNNKLVGQIPS 341 (384)
Q Consensus 317 ~~~~~~~~L~~L~l~~~~~~~~~~~ 341 (384)
..+..+++|+.|++++|.+.+..+.
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHhccCCceEEEecCCCcCCCcchH
Confidence 1223345666777777766654333
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.4e-22 Score=169.67 Aligned_cols=179 Identities=25% Similarity=0.300 Sum_probs=85.0
Q ss_pred CCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceE
Q 043452 126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL 205 (384)
Q Consensus 126 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 205 (384)
.+++|+.|+++++.+..++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++......+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4455666666665554432 24455566666666655542 22 23455555555555555554444444555555555
Q ss_pred eeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCc
Q 043452 206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285 (384)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 285 (384)
++++|.+. ..+...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.
T Consensus 115 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc
Confidence 55555544 333322223445555555555444433333444445555555554444 2222333344444444444444
Q ss_pred ccccccccccccCCcCeEeCCCCcC
Q 043452 286 FCGQVSPKFMNLTQLGWLSLDNNNF 310 (384)
Q Consensus 286 ~~~~~~~~~~~~~~L~~l~l~~~~~ 310 (384)
+.+..+..+..+++|+.|++++|.+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCc
Confidence 4444333344444444444444443
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.6e-21 Score=164.27 Aligned_cols=156 Identities=22% Similarity=0.294 Sum_probs=82.5
Q ss_pred CCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeC
Q 043452 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSL 305 (384)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 305 (384)
.++.|++++|.+.+..+..+..+++|++|++++|.+. ......+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4555555555555444444555555555555555554 223333444555555555555555444444555555555555
Q ss_pred CCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
++|.++ .++...+..+++|++|++++|.+.+..+.++..+++|+.|++++|++.+..+..|..+++|+.|++++|+|
T Consensus 115 ~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 555555 33334444455555555555555544444555555555555555555554444555555555555555554
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.9e-22 Score=165.25 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=156.9
Q ss_pred CCccEEEcCCCCCcCcccccCccccCCceEeeecCc-cCCCcchhHHHhccCCcEEEccC-CcCCCccchhccCCCCCcE
Q 043452 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS-FTGRLPQNMSTILQKLVYLDMSK-NKFEGSISSSISEMKDLRF 253 (384)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 253 (384)
+++++|+++++.++......+..+++|++|++++|. +. .++...+..+++|++|++++ |.++...+..+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 467777777777776666667778888888888886 65 55544445577888888887 7887666677888899999
Q ss_pred EEeeccccccccccchhccCCcce---EEEccCC-cccccccccccccCCcC-eEeCCCCcCCcccchhhhhccccceEE
Q 043452 254 LDLSRNQFSGELSAPLLTGCFSLW---LLDLSHN-SFCGQVSPKFMNLTQLG-WLSLDNNNFSGRISNGFLSSARSLQVL 328 (384)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L 328 (384)
|++++|.+.+ .+. +..+++|+ +|++++| .+....+..+..+++|+ .+++++|.++ .++...+.. ++|++|
T Consensus 110 L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEE
T ss_pred EeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEE
Confidence 9999998874 333 56677777 9999999 88877777788999999 9999999998 677666666 899999
Q ss_pred EcCCCc-cccccchhhhcc-CCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452 329 DISNNK-LVGQIPSWIGNF-SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 329 ~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
++++|. +.+..+.+|.++ ++|+.|++++|++++..+ . .+++|+.|+++++.
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K--GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-T--TCTTCSEEECTTC-
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-h--HhccCceeeccCcc
Confidence 999994 886667889999 999999999999985443 3 68899999999873
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.1e-21 Score=168.45 Aligned_cols=203 Identities=26% Similarity=0.249 Sum_probs=170.5
Q ss_pred CCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCc
Q 043452 124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH 203 (384)
Q Consensus 124 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 203 (384)
+..++++++++++++.+..++..+. ++++.|++++|.++ .++...+..+++|++|++++|.++..... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4567889999999999888776553 68999999999987 55555567899999999999998865443 6889999
Q ss_pred eEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccC
Q 043452 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH 283 (384)
Q Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (384)
+|++++|.+. .++..+ ..+++|++|++++|+++...+..+..+++|++|++++|.+. ..+...+..+++|+.|++++
T Consensus 81 ~L~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp EEECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCC
Confidence 9999999997 666544 44889999999999999777788899999999999999998 56666778899999999999
Q ss_pred CcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 284 NSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
|.+....+..+..+++|+.|++++|.++ .++..++. .+.|+.+++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~-~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc-cccCCeEEeCCCCcc
Confidence 9999877777888999999999999998 66666554 479999999998764
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.5e-21 Score=167.85 Aligned_cols=195 Identities=22% Similarity=0.295 Sum_probs=159.5
Q ss_pred ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226 (384)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 226 (384)
...+++|+.|+++++.+. .++. +..+++|++|++++|.+..... +..+++|++|++++|.+. ..+ .+ ..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~-~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AI-AGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GG-TTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hh-cCCCC
Confidence 456789999999999886 4553 5688999999999998886555 788999999999999987 343 33 34889
Q ss_pred CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD 306 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 306 (384)
|++|++++|.+++.. .+..+++|++|++++|.+.+... +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181 (308)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECC
Confidence 999999999998643 37889999999999999874322 6778999999999999886544 7788999999999
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+|.+++ ++. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|++++
T Consensus 182 ~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 182 DNKISD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCccCc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 999873 333 667799999999999998554 37899999999999999875
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.8e-21 Score=164.69 Aligned_cols=215 Identities=18% Similarity=0.239 Sum_probs=159.9
Q ss_pred CCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEE
Q 043452 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231 (384)
Q Consensus 152 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 231 (384)
++..+.+.++.+.+... ...+++|+.|+++++.+... ..+..+++|++|++++|.+.+ .+ .+ ..+++|++|+
T Consensus 20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-AL-KELTNLTYLI 91 (272)
T ss_dssp HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GG-TTCTTCCEEE
T ss_pred HHHHHHhcCcccccccc---cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hh-cCCCCCCEEE
Confidence 34455555555543333 23568899999998877643 246778889999999888873 32 33 3478888999
Q ss_pred ccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCC
Q 043452 232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311 (384)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 311 (384)
+++|.+++..+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 9888888777677788888899999888887 455555677888888888888888777767778888888888888887
Q ss_pred cccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 312 GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
.++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+ .|++|+.+++++|.+
T Consensus 171 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 171 -SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH 234 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred -ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence 5555556677888888888888887777777888888888888888763 366677776666544
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.6e-20 Score=159.41 Aligned_cols=194 Identities=19% Similarity=0.292 Sum_probs=141.2
Q ss_pred hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452 26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL 105 (384)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 105 (384)
..++++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~----------- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS----------- 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----------
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-----------
Confidence 5567888888888888773 44 57788888888888888874443 788888888888888765431
Q ss_pred hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185 (384)
Q Consensus 106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (384)
.+..+++|++|+++++.+.+++. +..+++|+.|++++|.+++ ++. +..+++|++|++++
T Consensus 102 -----------------~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 102 -----------------AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGN 160 (308)
T ss_dssp -----------------GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCS
T ss_pred -----------------hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccC
Confidence 24456778888888887776554 7778888888888887763 333 56778888888888
Q ss_pred CCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccc
Q 043452 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS 262 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 262 (384)
|.+..... +..+++|++|++++|.+. ..+. ...+++|++|++++|.+++.. .+..+++|+.|++++|.+.
T Consensus 161 n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 161 AQVSDLTP--LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcCCCChh--hcCCCCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 87775443 667778888888888776 3332 344778888888888777543 3667788888888888775
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=163.94 Aligned_cols=225 Identities=18% Similarity=0.215 Sum_probs=120.2
Q ss_pred ccccEEecCCCccccCCch---hhhcCCCCCEEEeecCcccCccCccc--cCCCCccEEECCCCccccccc---cccCCC
Q 043452 30 KNLIELNLEGNAIEGPLPQ---CLKNLTRLKVFGISSNQLSGSLPSVI--ASLTSLQYLDLSDNYFQGIFY---LSSLGN 101 (384)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~ 101 (384)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777665431111 11234668888888877776676666 777788888888777765322 112224
Q ss_pred CCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC---c--cccccccCCCCeEeccCCccCCCcHH---HHhh
Q 043452 102 HSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG---T--LGFLQKQHDLKSLDLSHNKLVGSFPA---WLLQ 173 (384)
Q Consensus 102 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~ 173 (384)
+++|++|+++.+.. .......+..+++|++|++++|.+.+ + ...+..+++|++|++++|.++ .++. .+++
T Consensus 144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 44555555444333 12223345556666666666666543 1 122345566666666666664 2222 2344
Q ss_pred hCCCccEEEcCCCCCcCcccccCccc---cCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCC
Q 043452 174 HNTKLEVLRLTNNSFTGSLQLSNSKL---DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKD 250 (384)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 250 (384)
.+++|++|++++|.+....+..+..+ ++|++|++++|.+. .++..+ +++|++|++++|++++. + .+..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~~L~~L~Ls~N~l~~~-~-~~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL---PAKLRVLDLSSNRLNRA-P-QPDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---CSCCSCEECCSCCCCSC-C-CTTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---cCCCCEEECCCCcCCCC-c-hhhhCCC
Confidence 55666666666666665443333333 45666666666555 444433 24555555555555532 1 1334455
Q ss_pred CcEEEeeccccc
Q 043452 251 LRFLDLSRNQFS 262 (384)
Q Consensus 251 L~~L~l~~~~~~ 262 (384)
|+.|++++|.++
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 555555555543
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.2e-20 Score=156.12 Aligned_cols=179 Identities=13% Similarity=0.152 Sum_probs=152.2
Q ss_pred cCCceEeeecCccCCCcchhHHHhccCCcEEEccCCc-CCCccchhccCCCCCcEEEeec-cccccccccchhccCCcce
Q 043452 200 DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK-FEGSISSSISEMKDLRFLDLSR-NQFSGELSAPLLTGCFSLW 277 (384)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~ 277 (384)
++|++|+++++.+. .++...+..+++|++|++++|. ++...+..+..+++|++|++++ |.+. ..+...|.++++|+
T Consensus 31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence 48999999999998 6666555569999999999997 8866667889999999999999 8887 55666778899999
Q ss_pred EEEccCCcccccccccccccCCcC---eEeCCCC-cCCcccchhhhhccccce-EEEcCCCccccccchhhhccCCccEE
Q 043452 278 LLDLSHNSFCGQVSPKFMNLTQLG---WLSLDNN-NFSGRISNGFLSSARSLQ-VLDISNNKLVGQIPSWIGNFSSLALL 352 (384)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 352 (384)
+|++++|.+.+ .+. +..+++|+ +|++++| .++ .++...+..+++|+ .|++++|.+....+.++.. ++|+.|
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence 99999999886 343 77888888 9999999 887 66666788889999 9999999998444455655 899999
Q ss_pred EccCcc-cccccccccccC-CCCceEeCcCCCCC
Q 043452 353 TVSKNL-LEGNIPVQLKNL-EALEILDVSENNLS 384 (384)
Q Consensus 353 ~l~~~~-~~~~~~~~~~~~-~~L~~l~l~~~~~s 384 (384)
++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 999996 887777889999 99999999999885
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=2.3e-19 Score=150.97 Aligned_cols=181 Identities=22% Similarity=0.242 Sum_probs=136.7
Q ss_pred CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL 230 (384)
Q Consensus 151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 230 (384)
...+.++++++.++ .+|..+ .++++.|+++++.+....+..+..+++|++|++++|.+. ..+...+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence 45678888888776 666433 367888888888888777777888888888888888887 4444444457888888
Q ss_pred EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcC
Q 043452 231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF 310 (384)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 310 (384)
++++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 88888888766677778888888888888877 45555566788888888888888776666777788888888888888
Q ss_pred CcccchhhhhccccceEEEcCCCccccc
Q 043452 311 SGRISNGFLSSARSLQVLDISNNKLVGQ 338 (384)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (384)
+ .++...+..+++|+.|++++|.+...
T Consensus 168 ~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 Q-SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp S-CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred C-ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7 45555566678888888888877643
No 95
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.80 E-value=3e-18 Score=153.96 Aligned_cols=333 Identities=14% Similarity=0.121 Sum_probs=232.6
Q ss_pred ccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccC
Q 043452 20 SLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSL 99 (384)
Q Consensus 20 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 99 (384)
+++..+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.++++++ ++.....+|.+|+.|+.+.+..+ +... ....+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i-~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI-GVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE-CTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee-cceee
Confidence 688888999999999999754 55566788999999999999865 55466778899999998887654 2211 11334
Q ss_pred CCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCcc
Q 043452 100 GNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179 (384)
Q Consensus 100 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 179 (384)
..+..+.... ..........+|..+++|+.+.+......-....+..+.+|+.+.+..+ +. .+....+..++.|+
T Consensus 137 ~~~~~~~~~~---~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 137 KGCDFKEITI---PEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLE 211 (394)
T ss_dssp TTCCCSEEEC---CTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCC
T ss_pred eccccccccc---CccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccc
Confidence 4443222211 2223344556788889999998865432224456778888999888765 22 45555677888888
Q ss_pred EEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecc
Q 043452 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRN 259 (384)
Q Consensus 180 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (384)
.+.+..+... .........+|+.+.+.... . .+....+..++.++.+.+..+... .....+..++.++.+.....
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred eeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 8877654322 12223345678888876542 2 344444556888999888765332 45566778888888877665
Q ss_pred ccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccccc
Q 043452 260 QFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQI 339 (384)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 339 (384)
.+ +...|..+.+|+.+.+.++ +......+|..|.+|+.+++... ++ .+...+|.+|.+|+.+.+..+ +..+.
T Consensus 287 ~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 287 IV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp EE----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ee----ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 43 3455777899999998765 55566778889999999999653 54 677778889999999999876 66567
Q ss_pred chhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452 340 PSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376 (384)
Q Consensus 340 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 376 (384)
..+|.+|++|+.+++..+ +. ....+|.+|++|+.+
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 789999999999999765 33 334678889988875
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=7.7e-19 Score=155.20 Aligned_cols=237 Identities=21% Similarity=0.210 Sum_probs=109.8
Q ss_pred EEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc-cccCccccCCceE-eeecC
Q 043452 133 LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL-QLSNSKLDFLHHL-DISSN 210 (384)
Q Consensus 133 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L-~l~~~ 210 (384)
++.++++++.+|..+ .+++++|++++|.++ .++...++.+++|++|++++|.+.+.. ..++..++++.++ .+..+
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 333444444444332 234555555555554 444444455555555555555543322 2334455554432 23334
Q ss_pred ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccC-CcceEEEccCCccccc
Q 043452 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGC-FSLWLLDLSHNSFCGQ 289 (384)
Q Consensus 211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~ 289 (384)
.+. .++...+..+++|++|++++|.+....+..+....++..+++.++......+...|..+ ..++.|++++|.+...
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred ccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 444 33333333355555555555555544333333444555555544321113333333333 2455566666655543
Q ss_pred ccccccccCCcCeEeCCCC-cCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccc
Q 043452 290 VSPKFMNLTQLGWLSLDNN-NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLK 368 (384)
Q Consensus 290 ~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 368 (384)
.+..+ ...+|+++++.++ .++ .++..++..+++|+.|++++|.++. +|. ..+.+|+.|.+.++...+..| .+.
T Consensus 170 ~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 170 HNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp CTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTT
T ss_pred Chhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-Cch
Confidence 33333 2344555555543 333 4555555555666666666665552 222 123444455544443333344 245
Q ss_pred cCCCCceEeCc
Q 043452 369 NLEALEILDVS 379 (384)
Q Consensus 369 ~~~~L~~l~l~ 379 (384)
.+++|+.++++
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 55566666554
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=143.41 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 329 (384)
.++.|++++|.+.+..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEE
Confidence 34555555555543223333445555555555555555544445555555666666665555 33334445555666666
Q ss_pred cCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
+++|.+.+..+.+|.++++|+.|++++|++++..|..|..+++|+.|++++|+|
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 666655555555555566666666666666555555555566666666666654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.9e-18 Score=148.48 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=146.2
Q ss_pred CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc
Q 043452 154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS 233 (384)
Q Consensus 154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 233 (384)
..+.+....+.+... .+.+++|++|+++++.+... ..+..+++|++|++++|.+.+ .+. ...+++|++|+++
T Consensus 27 ~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECC
T ss_pred HHHHhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECC
Confidence 334455555543222 23568899999999988755 247788999999999999874 443 4458899999999
Q ss_pred CCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcc
Q 043452 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGR 313 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 313 (384)
+|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 9998853 3478889999999999988742 3466789999999999988765 5677889999999999998743
Q ss_pred cchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccc
Q 043452 314 ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNI 363 (384)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 363 (384)
.+ +..+++|+.|++++|.+++. + ++..+++|+.|++++|++....
T Consensus 172 -~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 172 -VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred -hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 33 66778999999999988853 3 4888999999999999987543
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.2e-18 Score=143.18 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=79.0
Q ss_pred CCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEE
Q 043452 249 KDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVL 328 (384)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 328 (384)
++++.|++++|.+. ..+...+.++++|++|++++|.+....+..|..+++|++|++++|.++ .++..++..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEE
Confidence 45555555555554 333334445555666666666555555555666666666666666665 4454555555666666
Q ss_pred EcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
++++|.+.+..+.+|.++++|+.|++++|++++..+..|..+++|+.|++++|+|
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6666666655556666666666666666666655555566666666666666654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=6.2e-19 Score=155.80 Aligned_cols=216 Identities=19% Similarity=0.176 Sum_probs=167.5
Q ss_pred CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcE-EEc
Q 043452 154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY-LDM 232 (384)
Q Consensus 154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l 232 (384)
+.++.+++.++ ++|..+ .+++++|++++|.++.....+|..+++|++|++++|.+.+.++...+..++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888888887 777644 3689999999999997777889999999999999999875676666666777765 566
Q ss_pred cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccC-CcccccccccccccC-CcCeEeCCCCcC
Q 043452 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH-NSFCGQVSPKFMNLT-QLGWLSLDNNNF 310 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~l~l~~~~~ 310 (384)
.+++++...+..+..+++|++|++++|.+. ..+...+....++..+++.+ +.+....+..+..+. .++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678888777888899999999999999987 44444455567788899876 556655555666654 688999999999
Q ss_pred CcccchhhhhccccceEEEcCC-CccccccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452 311 SGRISNGFLSSARSLQVLDISN-NKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376 (384)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 376 (384)
+ .++..++.. .+|+++++.+ |.+....+++|.++++|+.|++++|+++...+..+.++++|+.+
T Consensus 167 ~-~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 167 Q-EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp C-EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred c-CCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 8 666665554 7899999986 46665555688999999999999999996555455544444433
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=4.4e-18 Score=137.53 Aligned_cols=151 Identities=14% Similarity=0.220 Sum_probs=111.7
Q ss_pred ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303 (384)
Q Consensus 224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 303 (384)
+++|++|++++|.++.. + .+..+++|++|++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56777777777777633 2 56677888888888886542 1245567888888888888877677778888888888
Q ss_pred eCCCCcCCcccchhhhhccccceEEEcCCCc-cccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNK-LVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
++++|.+++..+ ..+..+++|++|++++|. +. .++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 888888874333 445677889999999887 55 444 678888999999999988753 2 67888999999999988
Q ss_pred CC
Q 043452 383 LS 384 (384)
Q Consensus 383 ~s 384 (384)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 74
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.3e-18 Score=142.01 Aligned_cols=181 Identities=22% Similarity=0.233 Sum_probs=145.8
Q ss_pred cEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeec
Q 043452 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSR 258 (384)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (384)
+.++.+++.++.... ...++|++|+++++.+. ..+...+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~---~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT---GIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCC---CCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 566777766664432 22468999999999988 56655555688999999999999877666778899999999999
Q ss_pred cccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccc
Q 043452 259 NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338 (384)
Q Consensus 259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (384)
|.+. ..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee--
Confidence 9987 555566778899999999999998777777888999999999999988 555566777899999999999765
Q ss_pred cchhhhccCCccEEEccCcccccccccccccCCC
Q 043452 339 IPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372 (384)
Q Consensus 339 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 372 (384)
+.+++|+.|+++.|++++.+|..+..++.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35678899999999999888888877764
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=141.06 Aligned_cols=196 Identities=21% Similarity=0.233 Sum_probs=158.3
Q ss_pred CCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232 (384)
Q Consensus 153 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 232 (384)
-+.+++.++.++ .+|.. ..+++++|+++++.+.......+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 9 ~~~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TTEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEEC
Confidence 467788877765 55532 3478999999999998777777889999999999999998 666665566899999999
Q ss_pred cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCc
Q 043452 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 312 (384)
++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 999999777777888999999999999987 5555667789999999999999988777778889999999999998752
Q ss_pred ccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccc
Q 043452 313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ 366 (384)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 366 (384)
.++.|+.|++..|.+++.+|..++.++. ++..|...+..+..
T Consensus 163 --------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 163 --------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp --------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred --------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 3578899999999999999988887655 45555544333333
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.1e-18 Score=146.32 Aligned_cols=175 Identities=21% Similarity=0.260 Sum_probs=144.6
Q ss_pred ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226 (384)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 226 (384)
...+++|+.|+++++.+. .++. +..+++|++|++++|.+....+ +..+++|++|++++|.+. ..+. ...+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTT
T ss_pred hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCC
Confidence 457889999999999886 4443 5688999999999999886555 788999999999999987 3433 344889
Q ss_pred CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD 306 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 306 (384)
|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence 99999999999864 4677889999999999998743 456779999999999999987655 7889999999999
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCcccccc
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQI 339 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 339 (384)
+|.+++ ++. +..+++|+.|++++|.+....
T Consensus 187 ~N~i~~-l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 187 KNHISD-LRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SSCCCB-CGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred CCcCCC-Chh--hccCCCCCEEECcCCcccCCc
Confidence 999983 432 677899999999999887543
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1e-18 Score=155.00 Aligned_cols=156 Identities=26% Similarity=0.248 Sum_probs=70.1
Q ss_pred CCcEEEccCCcCCCccchhcc-CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEe
Q 043452 226 KLVYLDMSKNKFEGSISSSIS-EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304 (384)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 304 (384)
.++.|++++|.++...+..+. .+++|+.|++++|.+. ......|.++++|++|++++|.+....+..|..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 344444444444433333333 4444555555554444 22223334444555555555544444444444445555555
Q ss_pred CCCCcCCcccchhhhhccccceEEEcCCCccccccchhh---hccCCccEEEccCcccccccccccccCCC--CceEeCc
Q 043452 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI---GNFSSLALLTVSKNLLEGNIPVQLKNLEA--LEILDVS 379 (384)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~l~l~ 379 (384)
+++|.++ .+.+..+..+++|+.|++++|.++...+..+ ..+++|+.|+|++|++++..+..+..++. ++.|+++
T Consensus 119 L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 5555544 2233334444455555555555443222233 33455555555555555444344444444 2445555
Q ss_pred CCCC
Q 043452 380 ENNL 383 (384)
Q Consensus 380 ~~~~ 383 (384)
+|+|
T Consensus 198 ~N~~ 201 (361)
T 2xot_A 198 NNPL 201 (361)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 5543
No 106
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.7e-18 Score=151.71 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=141.7
Q ss_pred cCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC---CCcchhHHHhccC
Q 043452 150 QHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT---GRLPQNMSTILQK 226 (384)
Q Consensus 150 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~ 226 (384)
+++|+.+.+.+ .++ .++...|..|++|+.+++..+.+......+|..+.++..+........ ..+....+..+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56666666655 443 455555556666666666665555444555555544444433321100 0001111111333
Q ss_pred Cc-EEEccCCcCC-CccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEe
Q 043452 227 LV-YLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304 (384)
Q Consensus 227 L~-~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 304 (384)
|+ .+.+.....- ......-....++..+.+.+.-.. .....+...|++|+.+++++|.+......+|..|.+|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 33 2233221100 000000112345566666654221 22222334589999999999999988888999999999999
Q ss_pred CCCCcCCcccchhhhhccccce-EEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeC
Q 043452 305 LDNNNFSGRISNGFLSSARSLQ-VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDV 378 (384)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 378 (384)
+.++ ++ .+...+|..|++|+ .+++.+ .++.+.+.+|.+|++|+.|++++++++.+.+.+|.+|++|+.++.
T Consensus 257 l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9987 65 78888899999999 999999 777678899999999999999999999888889999999999874
No 107
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.75 E-value=2.2e-17 Score=148.28 Aligned_cols=319 Identities=12% Similarity=0.096 Sum_probs=232.5
Q ss_pred ccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeec
Q 043452 41 AIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120 (384)
Q Consensus 41 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 120 (384)
.++.+...+|..|.+|+.+.++.+ ++.+...+|.+|++|+.+++..+ ++. +....+..+++|+.+.+... .....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~c~~L~~i~~p~~--l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKM-IGRCTFSGCYALKSILLPLM--LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceE-ccchhhcccccchhhcccCc--eeeec
Confidence 355566788999999999999864 66677889999999999999865 332 23357888888887666432 33444
Q ss_pred cCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCcccc
Q 043452 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD 200 (384)
Q Consensus 121 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (384)
..+|..+..++....... ..-....+..+++|+.+.+.+... .+....+..+++|+.+.+..+ +......++..+.
T Consensus 133 ~~aF~~~~~~~~~~~~~~-~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGV-TVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTTTCCCSEEECCTTC-CEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccccccCccc-cccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 556666544333322211 111345678899999999976532 466667889999999999765 5555667788899
Q ss_pred CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452 201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280 (384)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 280 (384)
.|+.+.+..+... ..... ..+..|+.+.+... ++......+..+..++.+.+..+.. ......|..+..++.+.
T Consensus 209 ~L~~i~~~~~~~~--i~~~~-~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 209 LLENMEFPNSLYY--LGDFA-LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TCCBCCCCTTCCE--ECTTT-TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEE
T ss_pred ccceeecCCCceE--eehhh-cccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceec
Confidence 9999888765432 11112 22578999988654 3334456677889999999987654 45566778899999988
Q ss_pred ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
.....+ ...++..+.+|+.+.+..+ ++ .+...+|..|.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++
T Consensus 283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp ECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred cCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc
Confidence 876543 3456778999999999764 44 677788999999999999864 66577889999999999999876 66
Q ss_pred cccccccccCCCCceEeCcCC
Q 043452 361 GNIPVQLKNLEALEILDVSEN 381 (384)
Q Consensus 361 ~~~~~~~~~~~~L~~l~l~~~ 381 (384)
.+...+|.+|++|+.+++.++
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG
T ss_pred EehHHHhhCCCCCCEEEECCC
Confidence 678889999999999998654
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=6.9e-19 Score=154.21 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=174.7
Q ss_pred ccccccEEecCCCccccCCchhhhc-CCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452 28 ELKNLIELNLEGNAIEGPLPQCLKN-LTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE 106 (384)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 106 (384)
.+.+++.|.+++.- .......+.. +++|+.||++++.+.... ..-..++.++.+.+..+.
T Consensus 23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~-~~~~~~~~~~~~~~~~~~----------------- 83 (329)
T 3sb4_A 23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYS-GKAGTYPNGKFYIYMANF----------------- 83 (329)
T ss_dssp HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEE-ESSSSSGGGCCEEECTTE-----------------
T ss_pred hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEec-Cccccccccccccccccc-----------------
Confidence 35677778777642 2122233444 677888888877765111 001112223333333332
Q ss_pred hhhhhcccCceeeccCCCCC--------CCCccEEEccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCC
Q 043452 107 FFMLSLVNNTLEVETENWLP--------TSQLKVLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177 (384)
Q Consensus 107 ~l~l~~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 177 (384)
....+|.. +++|+.+.+.. .+..+ ...|..|++|+.+++.++.+. .++...|..+.+
T Consensus 84 ------------I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~ 149 (329)
T 3sb4_A 84 ------------VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVT 149 (329)
T ss_dssp ------------ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTC
T ss_pred ------------cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCc
Confidence 22233444 56666666665 44443 334666677777777766654 455555556666
Q ss_pred ccEEEcCCCC----CcCcccccCccccCCc-eEeeecCccCCCcchhHHHh---ccCCcEEEccCCcCCCccchhccCCC
Q 043452 178 LEVLRLTNNS----FTGSLQLSNSKLDFLH-HLDISSNSFTGRLPQNMSTI---LQKLVYLDMSKNKFEGSISSSISEMK 249 (384)
Q Consensus 178 L~~L~l~~~~----~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~ 249 (384)
+..+...... .......++..+..|+ .+.+.... ..+..+... ..++..+.+.+.-...........++
T Consensus 150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~ 226 (329)
T 3sb4_A 150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMP 226 (329)
T ss_dssp EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCT
T ss_pred eEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcC
Confidence 6666555421 1222233445556665 34333221 333333332 44667776665421111111112478
Q ss_pred CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcC-eEeCCCCcCCcccchhhhhccccceEE
Q 043452 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG-WLSLDNNNFSGRISNGFLSSARSLQVL 328 (384)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L 328 (384)
+|+.+++.+|.+. .++...|.+|++|+.+++.++ +......+|..|.+|+ .+++.+ .++ .+....|..|++|+.+
T Consensus 227 ~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 227 NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 8999999888877 777778888999999999887 6667778888999999 999987 666 6777888999999999
Q ss_pred EcCCCccccccchhhhccCCccEEEc
Q 043452 329 DISNNKLVGQIPSWIGNFSSLALLTV 354 (384)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~L~~L~l 354 (384)
++..+.+....+.+|.+|++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999888788889999999998864
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.9e-17 Score=136.99 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=115.1
Q ss_pred CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452 201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280 (384)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 280 (384)
..+.++.+++.+. .++..+ .++|++|++++|.+++..+..+..+++|++|++++|.+. ..+...+.++++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 4567788777776 666544 367888888888888777777778888888888888875 55556667788888888
Q ss_pred ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
+++|.+....+..+..+++|++|++++|.++ .++.. +..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888887766666777788888888888877 45444 355678888888888777555566777888888888888776
Q ss_pred cc
Q 043452 361 GN 362 (384)
Q Consensus 361 ~~ 362 (384)
..
T Consensus 173 c~ 174 (229)
T 3e6j_A 173 CE 174 (229)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2e-17 Score=155.33 Aligned_cols=173 Identities=21% Similarity=0.274 Sum_probs=104.9
Q ss_pred ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226 (384)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 226 (384)
+..+++|+.|+++++.+. .++. +..+++|+.|++++|.+....+ +..+++|+.|++++|.+. ..+ .+ ..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l-~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SL-KDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TS-TTCTT
T ss_pred hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hh-ccCCC
Confidence 456677777777777765 4442 4567777777777777665443 566777777777777665 222 22 23566
Q ss_pred CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD 306 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 306 (384)
|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 67777776666643 3455666666666666666522 344556666666666666655444 5556666666666
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVG 337 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 337 (384)
+|.+++ ++ .+..+++|+.|++++|.+.+
T Consensus 184 ~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 184 KNHISD-LR--ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCB-CG--GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCC-Ch--HHccCCCCCEEEccCCcCcC
Confidence 666652 22 24445666666666665553
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.8e-17 Score=155.76 Aligned_cols=198 Identities=22% Similarity=0.232 Sum_probs=154.9
Q ss_pred CCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232 (384)
Q Consensus 153 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 232 (384)
+..+.+....+.+..+ ...+++|+.|+++++.+.... .+..+++|+.|++++|.+.+ .+. ...+++|+.|++
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEEC
Confidence 4455556655553333 346688999999999887543 57889999999999999884 443 445899999999
Q ss_pred cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCc
Q 043452 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 312 (384)
++|.+.+. ..+..+++|+.|++++|.+.+ . ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISD-I--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCC-C--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999853 367889999999999999874 2 3467789999999999999865 567889999999999999984
Q ss_pred ccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452 313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL 370 (384)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 370 (384)
..+ +..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++.+.....+..+
T Consensus 168 ~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 168 IVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp CGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred chh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 433 67789999999999999854 468899999999999999986544333333
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=3.6e-17 Score=152.01 Aligned_cols=188 Identities=21% Similarity=0.264 Sum_probs=138.9
Q ss_pred CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL 230 (384)
Q Consensus 151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 230 (384)
.+++.|+++++.++ .+|..+ .++|++|++++|.++... ..+++|++|++++|.+.+ ++. +. .+|++|
T Consensus 59 ~~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LP---ASLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEE
T ss_pred CCccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hh---cCCCEE
Confidence 38889999888876 366533 377899999888887433 446888899998888873 555 32 388889
Q ss_pred EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcC
Q 043452 231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF 310 (384)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 310 (384)
++++|.+++. +. .+++|+.|++++|.+++ .+. .+++|++|++++|.+.+ .|. +. ++|+.|++++|.+
T Consensus 126 ~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 126 DVDNNQLTML-PE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp ECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred ECCCCcCCCC-CC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence 9988888763 33 57888899998888873 333 46788888888888876 344 54 7888888888888
Q ss_pred Ccccchhhhhccccc-------eEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452 311 SGRISNGFLSSARSL-------QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL 370 (384)
Q Consensus 311 ~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 370 (384)
+ .++. + . .+| +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 193 ~-~lp~-~-~--~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 193 E-SLPA-V-P--VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp S-SCCC-C-C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred C-chhh-H-H--HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 7 4444 2 2 155 88888888888 567777778888888888888888777776654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=141.33 Aligned_cols=169 Identities=20% Similarity=0.302 Sum_probs=122.6
Q ss_pred CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD 255 (384)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 255 (384)
.++..++++.+.+++.. .+..+++|++|++++|.+. .++ .+ ..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HH-hhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 44566667777666443 4567888888888888876 444 33 347888888888888876544 77788888888
Q ss_pred eeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335 (384)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (384)
+++|.+.+ .+. +.. ++|++|++++|.+.+. ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+
T Consensus 92 L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 92 VNRNRLKN-LNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CCSSCCSC-CTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCC
T ss_pred CCCCccCC-cCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcC
Confidence 88888763 222 122 7888888888888753 346778888888888888873 32 356678888888888888
Q ss_pred ccccchhhhccCCccEEEccCcccccc
Q 043452 336 VGQIPSWIGNFSSLALLTVSKNLLEGN 362 (384)
Q Consensus 336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 362 (384)
.+. ..+..+++|+.|++++|++...
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 755 6677888888888888888754
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=133.64 Aligned_cols=132 Identities=19% Similarity=0.277 Sum_probs=58.5
Q ss_pred CcEEEccCCcCCCccc-hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeC
Q 043452 227 LVYLDMSKNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSL 305 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 305 (384)
+++|++++|.++...+ ..+..+++|++|++++|.+. ......+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3444444444443211 22344444444444444443 222223344444444444444444444444444444555555
Q ss_pred CCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
++|.++ .+.+..+..+++|+.|++++|.+++..|.+|..+++|+.|++++|++.
T Consensus 113 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 554444 222222334444555555555444444444444555555555555443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1.6e-16 Score=147.61 Aligned_cols=189 Identities=24% Similarity=0.313 Sum_probs=153.3
Q ss_pred CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452 129 QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS 208 (384)
Q Consensus 129 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 208 (384)
+++.|+++++.+.+++..+ .++|+.|++++|.++ .+| ..+++|++|++++|.++.. +. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence 8999999999998877655 378999999999987 677 4679999999999999863 33 443 99999999
Q ss_pred cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452 209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288 (384)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (384)
+|.+. .++. .+++|+.|++++|.++.. +. .+++|++|++++|.+++ .+. +. ++|+.|++++|.+..
T Consensus 129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 129 NNQLT-MLPE----LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSS
T ss_pred CCcCC-CCCC----cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCc
Confidence 99998 4665 478999999999999863 33 56899999999999984 444 33 899999999999984
Q ss_pred cccccccccCCc-------CeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCC
Q 043452 289 QVSPKFMNLTQL-------GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS 348 (384)
Q Consensus 289 ~~~~~~~~~~~L-------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 348 (384)
.|. +.. +| +.|++++|.++ .++..++. +++|+.|++++|.+++..|..+..++.
T Consensus 195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 -LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -CCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred -hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 444 543 67 99999999998 67766655 799999999999999888888877544
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=5.7e-17 Score=133.24 Aligned_cols=151 Identities=24% Similarity=0.364 Sum_probs=76.6
Q ss_pred cEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeec
Q 043452 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSR 258 (384)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (384)
+.++.+++.++.... .+ .++++.|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~-~l--~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCS-SC--CTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCC-cc--CcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 345555554443222 11 145555555555555 33333333355555555555555544455555555555555555
Q ss_pred cccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452 259 NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335 (384)
Q Consensus 259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (384)
|.+. ..+...|.++++|++|++++|.+.+..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCc
Confidence 5554 344444455555555555555555555555555555555555555555 33333344445555555555544
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-16 Score=129.31 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=119.9
Q ss_pred ccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcc
Q 043452 197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSL 276 (384)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 276 (384)
..+++|++|+++++.+. .++ .+ ..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.. ...+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK-IPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGG-SCCCTTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCccc-ChhhcCCCCC
Confidence 56778888888888877 444 33 3478889999988866533 46778899999999999887433 3445678999
Q ss_pred eEEEccCCcccccccccccccCCcCeEeCCCCc-CCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEcc
Q 043452 277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVS 355 (384)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 355 (384)
++|++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+.+. + .+..+++|+.|+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEEC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEee
Confidence 999999999988778888899999999999998 65 444 367789999999999999853 3 78899999999999
Q ss_pred Cccccc
Q 043452 356 KNLLEG 361 (384)
Q Consensus 356 ~~~~~~ 361 (384)
+|++.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 998763
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1e-16 Score=142.16 Aligned_cols=176 Identities=23% Similarity=0.226 Sum_probs=110.0
Q ss_pred CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCc-cccCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452 154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS-KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232 (384)
Q Consensus 154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 232 (384)
+.++++++.++ .+|..+ .+.++.|++++|.++......+. .+++|++|++++|.+. .++...+..+++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 57788877775 566432 34577888888877766666665 6777777777777776 444333344667777777
Q ss_pred cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccc---cccCCcCeEeCCCCc
Q 043452 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKF---MNLTQLGWLSLDNNN 309 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~ 309 (384)
++|.++...+..+..+++|+.|++++|.+. ......+.++++|+.|++++|.+....+..+ ..+++|+.|++++|.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 777776555555666677777777777765 3334445566677777777776665444444 346666666666666
Q ss_pred CCcccchhhhhcccc--ceEEEcCCCccc
Q 043452 310 FSGRISNGFLSSARS--LQVLDISNNKLV 336 (384)
Q Consensus 310 ~~~~~~~~~~~~~~~--L~~L~l~~~~~~ 336 (384)
++ .++...+..++. ++.|++++|.+.
T Consensus 175 l~-~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence 66 444444444444 356666666553
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.3e-16 Score=130.52 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=98.8
Q ss_pred ccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEee
Q 043452 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257 (384)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 257 (384)
-+.++.+++.+..... .+ .++|++|++++|.+.+ .....+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3456666665553332 11 2677777777777763 333333346777777777777765555556677777777777
Q ss_pred ccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
+|.+. ..+...+..+++|++|++++|.+. ..|..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 97 ~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77776 444555566777777777777776 44555667777777777777776 444455666677777777777665
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.4e-17 Score=138.38 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=134.2
Q ss_pred ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCc
Q 043452 149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV 228 (384)
Q Consensus 149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 228 (384)
.+.++..++++++.++ .++. +..+++|++|+++++.+.... .+..+++|++|++++|.+. ..+. ...+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence 3456777788888776 4442 457799999999999887543 6778899999999999988 4444 44588999
Q ss_pred EEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCC
Q 043452 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN 308 (384)
Q Consensus 229 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 308 (384)
+|++++|.+++... +.. ++|++|++++|.+.+. ..+..+++|++|++++|.+.+.. .+..+++|++|++++|
T Consensus 89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS
T ss_pred EEECCCCccCCcCc--ccc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC
Confidence 99999999886432 223 8999999999998742 24677899999999999988652 5778899999999999
Q ss_pred cCCcccchhhhhccccceEEEcCCCccccc
Q 043452 309 NFSGRISNGFLSSARSLQVLDISNNKLVGQ 338 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (384)
.+++. ..+..+++|+.|++++|.+...
T Consensus 161 ~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 EITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 99844 3466778999999999988754
No 121
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.69 E-value=4.8e-15 Score=133.03 Aligned_cols=334 Identities=10% Similarity=0.099 Sum_probs=187.4
Q ss_pred ccchhhhhccc-cccEEecCCCccccCCchhhhcCCCCCEEEeecC---cccCccCccccCCCCccEEECCCCccccccc
Q 043452 20 SLENQGICELK-NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN---QLSGSLPSVIASLTSLQYLDLSDNYFQGIFY 95 (384)
Q Consensus 20 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 95 (384)
.++..+|.+++ .|+.+.|..+ ++.+...+|.+|.+|+.+.+..+ .++.....+|.+|.+|+.+.+..+ ++.. .
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I-~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI-D 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE-C
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee-h
Confidence 67778888885 5999999765 55467788999999999999764 355566678888888888777643 2211 2
Q ss_pred cccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhC
Q 043452 96 LSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN 175 (384)
Q Consensus 96 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 175 (384)
...+..+.+|+.+.+.. ........+|..+..|+.+.+..+ +..+....-...+|+.+.+..... .+....+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--~i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--RIGTNAFSEC 204 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--EECTTTTTTC
T ss_pred hhhhhhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc--ccccchhhhc
Confidence 23344444554444431 122233344444455555544322 111221111223444444433211 1122223344
Q ss_pred CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD 255 (384)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 255 (384)
.+++................+ ..+... ............+..+.+... ++.....++..|.+|+.+.
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLY-----------EKSANG-DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVK 271 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEE-----------EECTTS-CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEE
T ss_pred cccceecccccccccccceee-----------cccccc-cccccccccccccceEEcCCc-ceEcccceeeecccccEEe
Confidence 444444333222111000000 000000 000000000123444444322 2223445677888899998
Q ss_pred eeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335 (384)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (384)
+..+.. .+....|.+|++|+.+.+.. .+......+|..|.+|+.+++..+ ++ .+...+|.+|.+|+++.+..+ +
T Consensus 272 lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v 345 (394)
T 4gt6_A 272 MPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-V 345 (394)
T ss_dssp CCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-C
T ss_pred cccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-c
Confidence 876543 45666778899999998864 455566678888999999999764 44 677778889999999999764 6
Q ss_pred ccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452 336 VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383 (384)
Q Consensus 336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 383 (384)
+.+...+|.+|++|+.+++.++.... ..+..+..|+.+++..+.+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 66777899999999999999876531 4577888999998876654
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=6.7e-16 Score=138.05 Aligned_cols=245 Identities=10% Similarity=0.093 Sum_probs=161.8
Q ss_pred cCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccc
Q 043452 121 TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKL 199 (384)
Q Consensus 121 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 199 (384)
..+|.++ +|+.+.+..+ +..+. ..+.+ .+|+.+.+.. .+. .+....|..|++|+.+++..+.++.....+|. +
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 3444443 5666666543 33322 22333 3577777765 222 44445566777777777777666655555555 4
Q ss_pred cCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEE
Q 043452 200 DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLL 279 (384)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 279 (384)
.+|+.+.+..+ +. .+....+..|++|+.+.+..+ ++.....++.. .+|+.+.+.. .+. .+....|.+|++|+.+
T Consensus 203 ~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 203 AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEV 276 (401)
T ss_dssp CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEE
T ss_pred cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEE
Confidence 67777777643 44 455555566777777777653 44344455555 5788888844 333 5566677778888888
Q ss_pred EccCCccc-----ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452 280 DLSHNSFC-----GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV 354 (384)
Q Consensus 280 ~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 354 (384)
++.++.+. .....+|..|++|+.+.+.+ .++ .+...+|..|.+|+.+.+..+ ++.+...+|.+| +|+.|++
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence 88776554 35566788888888888874 455 677777888888998888654 655667888888 8999999
Q ss_pred cCcccccccccccccCC-CCceEeCcCC
Q 043452 355 SKNLLEGNIPVQLKNLE-ALEILDVSEN 381 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~L~~l~l~~~ 381 (384)
.++......+..|..++ .+..+++..+
T Consensus 353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 353 EGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cCCCCcccccccccCCCCCccEEEeCHH
Confidence 88887766777788885 6788877654
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=2.8e-15 Score=134.03 Aligned_cols=267 Identities=13% Similarity=0.150 Sum_probs=165.1
Q ss_pred cCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCcc
Q 043452 52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLK 131 (384)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 131 (384)
.+..++.+.++++ ++.+...+|.++ +|+.+.+..+ ++.. ...+|.++ +|+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I--------------------------~~~aF~~~-~L~ 160 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSI--------------------------GDMAFFNS-TVQ 160 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEE--------------------------CTTTTTTC-CCC
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEE--------------------------CHHhcCCC-Cce
Confidence 4567777777763 343556667665 6777777654 2221 11223332 355
Q ss_pred EEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452 132 VLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210 (384)
Q Consensus 132 ~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (384)
.+.+.. .+.. ....+..|++|+.+++.++.++ .++...|. +++|+.+.+..+ +......+|..+++|+.+++..+
T Consensus 161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred EEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 555543 2222 2234555666666666655554 44444443 466666666532 44455556666667777766653
Q ss_pred ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccc----cccccchhccCCcceEEEccCCcc
Q 043452 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS----GELSAPLLTGCFSLWLLDLSHNSF 286 (384)
Q Consensus 211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~ 286 (384)
+. .+....+.. .+|+.+.+. +.++.....++..|++|+.+.+.++... ..+....|.+|++|+.+.+.+ .+
T Consensus 237 -l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 237 -VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp -CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred -cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 32 333333333 467777774 3344455667777788888888776542 124556777888888888884 46
Q ss_pred cccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccC-CccEEEccCcccc
Q 043452 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFS-SLALLTVSKNLLE 360 (384)
Q Consensus 287 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 360 (384)
......+|..|.+|+.+.+..+ ++ .+...+|..| +|+.+.+.+|........+|.+++ +++.|.+..+.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 6666778888888888888654 44 5666778888 888888888877666667777774 6788888776653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=7.3e-16 Score=121.12 Aligned_cols=133 Identities=22% Similarity=0.176 Sum_probs=68.4
Q ss_pred cCCcEEEccCCcCC-CccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452 225 QKLVYLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303 (384)
Q Consensus 225 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 303 (384)
++|++|++++|.++ +..+..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45666666666655 33344445556666666666665422 334445555555555555554444444445555555
Q ss_pred eCCCCcCCcccchhhhhccccceEEEcCCCccccccc---hhhhccCCccEEEccCcccc
Q 043452 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP---SWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 360 (384)
++++|.+++......+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555422221234444555555555555553322 24455555555555555544
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.7e-18 Score=160.34 Aligned_cols=204 Identities=21% Similarity=0.186 Sum_probs=137.6
Q ss_pred cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC-------------CcCcccccCccccCCceEe-eecCccC
Q 043452 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS-------------FTGSLQLSNSKLDFLHHLD-ISSNSFT 213 (384)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~ 213 (384)
..+++|+.|+++++.+. .+|..+ +.+++|+.|+++++. .....+..+..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 45677888888887775 666665 467777777775543 1112222333334444443 222211
Q ss_pred CCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccc
Q 043452 214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293 (384)
Q Consensus 214 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (384)
+.|+.+.+.++.++.. . ...|+.|++++|.+++ .+. +..+++|+.|++++|.+. ..|..
T Consensus 423 -----------~~L~~l~l~~n~i~~l-----~-~~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 423 -----------DDLRSKFLLENSVLKM-----E-YADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHH-----H-HTTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred -----------chhhhhhhhccccccc-----C-ccCceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccchh
Confidence 1122222222222211 1 1358888888888873 333 677889999999999888 56778
Q ss_pred ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccccc-chhhhccCCccEEEccCcccccccccc---ccc
Q 043452 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQI-PSWIGNFSSLALLTVSKNLLEGNIPVQ---LKN 369 (384)
Q Consensus 294 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~ 369 (384)
+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++.. |..+.++++|+.|++++|++++..+.. +..
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred hhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence 8899999999999999984 44 4677899999999999998766 899999999999999999998654432 345
Q ss_pred CCCCceEeC
Q 043452 370 LEALEILDV 378 (384)
Q Consensus 370 ~~~L~~l~l 378 (384)
+|+|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 899999864
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.3e-15 Score=117.13 Aligned_cols=128 Identities=21% Similarity=0.195 Sum_probs=86.3
Q ss_pred CCCcEEEeeccccc-cccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceE
Q 043452 249 KDLRFLDLSRNQFS-GELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQV 327 (384)
Q Consensus 249 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 327 (384)
++++.|++++|.+. +..+ ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. .+..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence 45666666666554 2222 2344566666666666666544 4566677788888888877743 3444555778888
Q ss_pred EEcCCCccccc-cchhhhccCCccEEEccCcccccccc---cccccCCCCceEeCcC
Q 043452 328 LDISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEGNIP---VQLKNLEALEILDVSE 380 (384)
Q Consensus 328 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~ 380 (384)
|++++|.+.+. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888887753 34677888888888888888876555 4678888888888764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.3e-15 Score=119.66 Aligned_cols=135 Identities=19% Similarity=0.128 Sum_probs=105.4
Q ss_pred CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccce
Q 043452 247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326 (384)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 326 (384)
..++|++|++++|.+.+......+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. .+..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence 3478999999999886222233456788999999999988765 6677888999999999988744 445566678999
Q ss_pred EEEcCCCcccccc-chhhhccCCccEEEccCcccccccc---cccccCCCCceEeCcCCCCC
Q 043452 327 VLDISNNKLVGQI-PSWIGNFSSLALLTVSKNLLEGNIP---VQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 327 ~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~s 384 (384)
.|++++|.+.+.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.++
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999888542 3678889999999999999886554 47888999999999988763
No 128
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.63 E-value=2.8e-14 Score=128.08 Aligned_cols=314 Identities=12% Similarity=0.135 Sum_probs=194.5
Q ss_pred cccCCchhhhcCC-CCCEEEeecCcccCccCccccCCCCccEEECCCCc---cccccccccCCCCCchhhhhhhcccCce
Q 043452 42 IEGPLPQCLKNLT-RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY---FQGIFYLSSLGNHSNLEFFMLSLVNNTL 117 (384)
Q Consensus 42 ~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 117 (384)
++.+...+|..+. .|+.+.++.+ ++.+...+|.+|++|+.+.+..+. ++. +....+..+.+|+.+.+... ..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~-Ig~~aF~~c~~L~~i~~~~~--~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKK-IGRQAFMFCSELTDIPILDS--VT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCE-ECTTTTTTCTTCCBCGGGTT--CS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeE-echhhchhcccceeeccCCc--cc
Confidence 4445567888885 6999999975 666788899999999999997653 222 22345666777776665432 33
Q ss_pred eeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCc
Q 043452 118 EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197 (384)
Q Consensus 118 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 197 (384)
.....+|..+.+|+.+.+...-..-....+..+..|+.+.+.+.- + .+....+. ..+|+.+.+... +......++.
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~ 202 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-T-AIEERAFT-GTALTQIHIPAK-VTRIGTNAFS 202 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTT-TCCCSEEEECTT-CCEECTTTTT
T ss_pred eehhhhhhhhcccccccccceeeeecccceeccccccccccccee-e-Eecccccc-ccceeEEEECCc-ccccccchhh
Confidence 344556666666776666433211133345556666666665431 1 22222232 245666655432 2223334445
Q ss_pred cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcce
Q 043452 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLW 277 (384)
Q Consensus 198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 277 (384)
.+..++.......... .....+.. .+...............+..+.+... +. ......|.+|+.|+
T Consensus 203 ~c~~l~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~ 268 (394)
T 4gt6_A 203 ECFALSTITSDSESYP-AIDNVLYE-----------KSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLA 268 (394)
T ss_dssp TCTTCCEEEECCSSSC-BSSSCEEE-----------ECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCC
T ss_pred hccccceecccccccc-cccceeec-----------ccccccccccccccccccceEEcCCc-ce-Ecccceeeeccccc
Confidence 5555555544333222 11100000 00000011111122334555555432 22 34556788899999
Q ss_pred EEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCc
Q 043452 278 LLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357 (384)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 357 (384)
.+.+.+... .....+|..|..|+.+.+.. .++ .+...+|..|.+|+++.+..+ ++.+...+|.+|++|+.+.+..+
T Consensus 269 ~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 269 SVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp EEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred EEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 999976543 35667888999999999964 454 677788999999999999875 66567789999999999999764
Q ss_pred ccccccccccccCCCCceEeCcCCC
Q 043452 358 LLEGNIPVQLKNLEALEILDVSENN 382 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~L~~l~l~~~~ 382 (384)
++.+...+|.+|.+|+.+++.++.
T Consensus 345 -v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 345 -VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred -cCEEhHhHhhCCCCCCEEEECCce
Confidence 666788899999999999998763
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.6e-15 Score=121.78 Aligned_cols=130 Identities=21% Similarity=0.258 Sum_probs=84.5
Q ss_pred cEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCC
Q 043452 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307 (384)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 307 (384)
+.++++++.++.. +..+. ++++.|++++|.+.+......+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5677777777533 33232 36777777777776333333456677777777777777766666677777777777777
Q ss_pred CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 308 NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
|.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|++..
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 7776 3333445556677777777777766666666677777777777777654
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.9e-15 Score=116.22 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=103.3
Q ss_pred ccCCcEEEccCCcCC-CccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCe
Q 043452 224 LQKLVYLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302 (384)
Q Consensus 224 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 302 (384)
.+++++|++++|.++ +..+..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 357888888888877 45566677888899999998888633 55677889999999999888767777777899999
Q ss_pred EeCCCCcCCcccchhhhhccccceEEEcCCCccccccc---hhhhccCCccEEEccC
Q 043452 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP---SWIGNFSSLALLTVSK 356 (384)
Q Consensus 303 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 356 (384)
|++++|.+++......+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998743333557778999999999999886555 5788999999998874
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6e-15 Score=116.94 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=76.0
Q ss_pred CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD 306 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 306 (384)
.+.++++++.++... ..+ .++++.|++++|.+. ..+...+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCC-CCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456666666665332 222 256677777776665 3444445556666666666666665555555566666666666
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+|.++ .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 85 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66665 3444444555666666666666664444445566666666666666654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=6.8e-15 Score=118.07 Aligned_cols=127 Identities=26% Similarity=0.286 Sum_probs=69.1
Q ss_pred cEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCC
Q 043452 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307 (384)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 307 (384)
+.++++++.++.. +..+ .++++.|++++|.+. ..+ ..+.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4566666665532 2222 245666666666664 333 3445556666666666666555555555556666666666
Q ss_pred CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 308 NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
|.++ .+++..+..+++|+.|++++|.++...+.+|..+++|+.|++++|++.
T Consensus 88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6555 333334445555666666665555444445555555666666555554
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=7.1e-15 Score=116.32 Aligned_cols=130 Identities=21% Similarity=0.138 Sum_probs=59.1
Q ss_pred ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303 (384)
Q Consensus 224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 303 (384)
+++|++|++++|.++.. +......++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34555566655555532 22222223555555555555421 233445555555555555543333333444555555
Q ss_pred eCCCCcCCcccch-hhhhccccceEEEcCCCccccccch----hhhccCCccEEEccCccc
Q 043452 304 SLDNNNFSGRISN-GFLSSARSLQVLDISNNKLVGQIPS----WIGNFSSLALLTVSKNLL 359 (384)
Q Consensus 304 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 359 (384)
++++|.++ .++. ..+..+++|+.|++++|.+. ..|. .+..+++|+.|++++|..
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555543 2221 12334445555555555444 2222 244455555555555544
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1e-16 Score=149.75 Aligned_cols=179 Identities=19% Similarity=0.243 Sum_probs=138.0
Q ss_pred ccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCc-------------CCCccchhccCCCCCcEEE-eeccccc
Q 043452 197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK-------------FEGSISSSISEMKDLRFLD-LSRNQFS 262 (384)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~ 262 (384)
..+++|+.|++++|.+. .+|..+.. +++|+.|+++++. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 55778888888888876 67777665 7788888876553 2334556666777888877 5554332
Q ss_pred cccccch-----hc--cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452 263 GELSAPL-----LT--GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335 (384)
Q Consensus 263 ~~~~~~~-----~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (384)
...... +. ....|+.|++++|.+++. |. +..+++|+.|++++|.++ .++. .+..+++|+.|++++|.+
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNAL 498 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCC
Confidence 111100 00 123689999999999874 44 889999999999999998 6655 467789999999999999
Q ss_pred ccccchhhhccCCccEEEccCccccccc-ccccccCCCCceEeCcCCCCC
Q 043452 336 VGQIPSWIGNFSSLALLTVSKNLLEGNI-PVQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~s 384 (384)
++ +| .+.++++|+.|++++|++++.. |..+..+++|+.|++++|+|+
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 95 56 8899999999999999999776 999999999999999999874
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.7e-14 Score=115.82 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=107.2
Q ss_pred CceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch-hccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS-SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280 (384)
Q Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 280 (384)
.+.++++++.+. .++..+ .+++++|++++|.++...+. .+..+++|++|++++|.+. ......+.++++|++|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEE
Confidence 378899999886 677654 34899999999999866553 4788999999999999997 44445667799999999
Q ss_pred ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccc
Q 043452 281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338 (384)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (384)
+++|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+...
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999998888888899999999999999984 4444566778999999999988754
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=2.1e-15 Score=133.58 Aligned_cols=185 Identities=18% Similarity=0.157 Sum_probs=118.5
Q ss_pred ccCCceEeeecCccCCCcchhHHHh----ccCCcEEEccCCcCCCccchhc-cCCCCCcEEEeeccccccccccchh---
Q 043452 199 LDFLHHLDISSNSFTGRLPQNMSTI----LQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGELSAPLL--- 270 (384)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~--- 270 (384)
.+.|++|++++|.++......+... +++|++|++++|.+++.....+ ..+++|+.|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678888888888875444444443 2578888888888765433222 2356788888888888643322221
Q ss_pred -ccCCcceEEEccCCccccccc----ccccccCCcCeEeCCCCcCCcccch---hhhhccccceEEEcCCCcccccc---
Q 043452 271 -TGCFSLWLLDLSHNSFCGQVS----PKFMNLTQLGWLSLDNNNFSGRISN---GFLSSARSLQVLDISNNKLVGQI--- 339 (384)
Q Consensus 271 -~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~--- 339 (384)
...++|++|++++|.+++... ..+..+++|++|++++|.+++.... ..+..+++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235778888888888875333 3345678888888888887643322 23344568888888888887543
Q ss_pred -chhhhccCCccEEEccCcccccccccccccCC--C---CceEe--CcCCCC
Q 043452 340 -PSWIGNFSSLALLTVSKNLLEGNIPVQLKNLE--A---LEILD--VSENNL 383 (384)
Q Consensus 340 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~---L~~l~--l~~~~~ 383 (384)
+.++..+++|+.|+|++|++++.....+..+. . |+.+. +.++.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 34445678888888888888876555554432 1 66665 555544
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=7.8e-15 Score=129.89 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=105.7
Q ss_pred CCccEEEcCCCCCcCcccccCc-----cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhc-----
Q 043452 176 TKLEVLRLTNNSFTGSLQLSNS-----KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI----- 245 (384)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----- 245 (384)
++|+.|++++|.++......+. ..++|++|++++|.+++.....+...+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555555555555432222222 124666677766666655555555556677777777777664333222
Q ss_pred cCCCCCcEEEeecccccccccc---chhccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhh
Q 043452 246 SEMKDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGF 318 (384)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 318 (384)
...++|++|++++|.+++.... ..+..+++|++|++++|.+.+.. ...+..+++|++|++++|.+++.....+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356777777777777532221 22345677777888777776543 3445566778888888888764332222
Q ss_pred ---hhccccceEEEcCCCccccccchhhhccCC-----ccEEE--ccCcccc
Q 043452 319 ---LSSARSLQVLDISNNKLVGQIPSWIGNFSS-----LALLT--VSKNLLE 360 (384)
Q Consensus 319 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----L~~L~--l~~~~~~ 360 (384)
+..+++|++|++++|.+.+....++..+.. |+.+. +.++.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 334577888888888887666666654322 55555 5555544
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2e-13 Score=108.11 Aligned_cols=134 Identities=24% Similarity=0.302 Sum_probs=107.4
Q ss_pred CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452 201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280 (384)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 280 (384)
..+.++++++.+. .++..+ .+++++|++++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|+
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILY 82 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEE
Confidence 3577888888877 566443 468999999999988766667788899999999999887 55556667889999999
Q ss_pred ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccc
Q 043452 281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP 340 (384)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 340 (384)
+++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998777777788899999999999888 5666667778899999999998875443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=8.6e-15 Score=140.97 Aligned_cols=191 Identities=18% Similarity=0.231 Sum_probs=78.2
Q ss_pred CCccEEEccCCCCCCccccccccCCCCeEeccC-----CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCC
Q 043452 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSH-----NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFL 202 (384)
Q Consensus 128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 202 (384)
+.++.|++.++.+...+..+....+|..+.+.. +.+ .++...+..+++|+.|++++|.+.. ++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCC
Confidence 456666666665555443333333333333322 111 1334444566667777776666653 23333456666
Q ss_pred ceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEcc
Q 043452 203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLS 282 (384)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 282 (384)
++|+|++|.+. .++..+. .+++|++|++++|.++ .++..+..+++|++|++++|.+. ..+.. +..+++|++|+++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVE 324 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECT
T ss_pred CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCC
Confidence 66666666666 5555443 3666666666666666 44555666666666666666664 33333 4556666666666
Q ss_pred CCcccccccccccccCC-cCeEeCCCCcCCcccchhhhhccccceEEEcCCC
Q 043452 283 HNSFCGQVSPKFMNLTQ-LGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333 (384)
Q Consensus 283 ~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (384)
+|.+.+..+..+..... ...+++++|.+++.++ ..|+.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence 66666555554433211 1224555555553333 24455555554
No 140
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.49 E-value=2.8e-12 Score=114.45 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=58.4
Q ss_pred hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452 26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL 105 (384)
Q Consensus 26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 105 (384)
+....+|+.+.|... ++.+...+|..|.+|+.++++.+ ++.+...+|.++ +|+.+.+..+ ++.. ....+..+ +|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I-~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKF-GDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEE-CTTTTTTC-CC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEe-ccceeccC-Cc
Confidence 344556666666543 33345556666777777777643 443555566665 4555555432 2111 11223222 45
Q ss_pred hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccC
Q 043452 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSH 160 (384)
Q Consensus 106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~ 160 (384)
+.+.+... .......+|..+ +++.+.+... +.. ....+..+.+++.+.+..
T Consensus 116 ~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 116 DDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp SEEECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred ccccCCCc--cccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 55444321 122233333333 4444444322 111 223345556666665544
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=2.6e-13 Score=108.79 Aligned_cols=127 Identities=28% Similarity=0.362 Sum_probs=103.5
Q ss_pred ceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEcc
Q 043452 203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLS 282 (384)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 282 (384)
+.++++++.+. .++..+ .+++++|++++|.++ ..+..+..+++|+.|++++|.+. ......|.++++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 57888888877 666544 358999999999888 44577888899999999999887 5555667788999999999
Q ss_pred CCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
+|.+....+..|..+++|++|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 99998888888888899999999999888 666666777889999999988764
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.2e-15 Score=123.23 Aligned_cols=107 Identities=30% Similarity=0.292 Sum_probs=49.4
Q ss_pred ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303 (384)
Q Consensus 224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 303 (384)
+++|++|++++|.+++ .+ .+..+++|+.|++++|.+. ..+ ..+..+++|++|++++|.+.+. + .+..+++|++|
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIE-NLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCS-SHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-ccc-chhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEE
Confidence 5566666666665554 22 4455556666666665554 222 1223344555555555544432 1 23444445555
Q ss_pred eCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
++++|.+++......+..+++|++|++++|.+.
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 555544442111122333444444444444443
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=1.8e-13 Score=108.24 Aligned_cols=130 Identities=22% Similarity=0.255 Sum_probs=69.1
Q ss_pred cCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452 246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325 (384)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 325 (384)
..+++|+.|++++|.+. .. ..+....++|++|++++|.+.+. ..+..+++|++|++++|.++ .+++.++..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 34455666666666554 22 12222233566666666655543 34555566666666666655 3344444555666
Q ss_pred eEEEcCCCccccccch--hhhccCCccEEEccCccccccccc----ccccCCCCceEeCcCCC
Q 043452 326 QVLDISNNKLVGQIPS--WIGNFSSLALLTVSKNLLEGNIPV----QLKNLEALEILDVSENN 382 (384)
Q Consensus 326 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~ 382 (384)
+.|++++|.+. .+|. .+..+++|+.|++++|++++ .|. .+..+++|+.||+++|.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 66666666554 3333 45556666666666666553 233 25556666666665554
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=2.6e-14 Score=137.69 Aligned_cols=143 Identities=22% Similarity=0.337 Sum_probs=88.2
Q ss_pred cccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhcc
Q 043452 193 QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG 272 (384)
Q Consensus 193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 272 (384)
+..+..++.|+.|++++|.+. .++..++. +++|++|++++|.++ .++..+..+++|++|++++|.+. ..+.. +.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh-hcC
Confidence 445566677777777777776 56655553 677777777777777 55566677777777777777776 44333 455
Q ss_pred CCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccch
Q 043452 273 CFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS 341 (384)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 341 (384)
+++|++|++++|.+. .+|..+..+++|++|+|++|.+++.++..+.........+++++|.+++..|.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 777777777777765 44555777777777777777776544443322212223356667766655554
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.46 E-value=5.4e-12 Score=112.61 Aligned_cols=307 Identities=11% Similarity=0.084 Sum_probs=186.3
Q ss_pred hhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCC
Q 043452 48 QCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT 127 (384)
Q Consensus 48 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 127 (384)
+++....+|+.+.++.. ++.+...+|.+|.+|+.+.+..+ ++.. ....+..+ +|..+.+. .........+|..+
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~--~~l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGM--ERVKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEEC--TTCCEECTTTTTTC
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECC--ceeeEeccceeccC
Confidence 45667789999999864 55577889999999999999764 3322 22445555 34444332 22333444455443
Q ss_pred CCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC------------cccc
Q 043452 128 SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG------------SLQL 194 (384)
Q Consensus 128 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~ 194 (384)
+|+.+.+...- ..+. ..+.. .+++.+.+...- + .+....+..+.+++.+.+....... ....
T Consensus 114 -~L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~v-~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 114 -DLDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKSV-T-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp -CCSEEECCTTC-CEECTTTTTT-CCCCEEEECTTC-C-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred -CcccccCCCcc-cccccccccc-ceeeeeecccee-e-ccccchhcccccccccccccccceeecccceecccccceec
Confidence 78888876542 2222 22333 356666555431 1 2333335567777777766543221 1111
Q ss_pred cCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCC
Q 043452 195 SNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF 274 (384)
Q Consensus 195 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 274 (384)
.+..+..+..+.+..... ......+..+.+++.+.+... +.......+..+..|+.+.+..+ ++ .+....|.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~ 263 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCT 263 (379)
T ss_dssp ECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCT
T ss_pred ccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceee
Confidence 223334444444433221 122222334667777777543 33344556677788888888765 32 45566677788
Q ss_pred cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452 275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV 354 (384)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 354 (384)
+|+.+.+..+ +......+|..|.+|+.+.+.++.++ .+...+|..|.+|+.+.+..+ ++.+...+|.+|++|+.+.+
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 8888887654 44455567778888888888777776 666777888888888888754 55456678888888888888
Q ss_pred cCcccccccccccccCCCCc
Q 043452 355 SKNLLEGNIPVQLKNLEALE 374 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~L~ 374 (384)
..+ ++.+...+|.+|..++
T Consensus 341 p~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 341 PKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CTT-CCEECTTTTTTSSCCC
T ss_pred CCc-cCEEchhHhhCCCCCc
Confidence 654 5556667777775443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.2e-12 Score=102.74 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=70.9
Q ss_pred CcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEc
Q 043452 251 LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330 (384)
Q Consensus 251 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 330 (384)
.+.++++++.+. ..+..+ .+++++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 466777777765 344333 356777777777777666666777777777777777776 555555566677777777
Q ss_pred CCCccccccchhhhccCCccEEEccCccccc
Q 043452 331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
++|.+.+..+.+|..+++|+.|++++|++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7777765555566777777777777777654
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.9e-14 Score=115.10 Aligned_cols=131 Identities=25% Similarity=0.256 Sum_probs=91.4
Q ss_pred hccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccc
Q 043452 244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR 323 (384)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 323 (384)
.+..+++|++|++++|.+.+ .+ .+.++++|++|++++|.+.. .+..+..+++|++|++++|.+++ ++ .+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS--GIEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC--ccccCC
Confidence 66777888888888887763 33 55667788888888887763 44555566778888888887763 33 255667
Q ss_pred cceEEEcCCCccccccc-hhhhccCCccEEEccCccccccccc----------ccccCCCCceEeCcCCCC
Q 043452 324 SLQVLDISNNKLVGQIP-SWIGNFSSLALLTVSKNLLEGNIPV----------QLKNLEALEILDVSENNL 383 (384)
Q Consensus 324 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~~~~ 383 (384)
+|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+..|. .+..+++|+.|| ++++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 88888888887774322 4677788888888888887655443 267788888776 5554
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=3.3e-12 Score=100.44 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=72.6
Q ss_pred cEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcC
Q 043452 252 RFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331 (384)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 331 (384)
+.++++++.+. ..+..+ .++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 56777777765 444433 267777777777777766667777777777777777776 4555556666777777777
Q ss_pred CCccccccchhhhccCCccEEEccCccccc
Q 043452 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361 (384)
Q Consensus 332 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 361 (384)
+|.+.+..+.+|..+++|+.|++++|++..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 777775555557777777777777777663
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.1e-11 Score=97.19 Aligned_cols=106 Identities=26% Similarity=0.275 Sum_probs=81.6
Q ss_pred CCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeC
Q 043452 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSL 305 (384)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 305 (384)
..+.++++++.++.. +..+ .+++++|++++|.+. ......+.++++|++|++++|.+....+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 357888888888743 3333 378888999888887 444555677888899999888888777777788888889999
Q ss_pred CCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 306 DNNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
++|.++ .++...+..+++|+.|++++|.+.
T Consensus 86 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888887 556566777788889999888775
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.1e-11 Score=95.87 Aligned_cols=105 Identities=23% Similarity=0.289 Sum_probs=84.4
Q ss_pred CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD 306 (384)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 306 (384)
-+.++++++.++.. +..+. ++|+.|++++|.+. ......+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 46889998888743 43332 78999999999987 4445567778999999999999988777677888999999999
Q ss_pred CCcCCcccchhhhhccccceEEEcCCCccc
Q 043452 307 NNNFSGRISNGFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 336 (384)
+|.++ .++...+..+++|+.|++++|.+.
T Consensus 90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 99988 566666777889999999999876
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.18 E-value=1.3e-10 Score=101.93 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=34.9
Q ss_pred cCCcCeEeCCCCcCCcccchhhhh--ccccceEEEcCCCccccccchh----hhccCCccEEEccCccccccccccc
Q 043452 297 LTQLGWLSLDNNNFSGRISNGFLS--SARSLQVLDISNNKLVGQIPSW----IGNFSSLALLTVSKNLLEGNIPVQL 367 (384)
Q Consensus 297 ~~~L~~l~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~ 367 (384)
+++|++|++.+|.+.+.....++. .+++|++|+++.|.+.+..+.+ +..+++|+.|++++|++++.....+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 455666666655554332222221 2455666666665555432222 2334566666666665554433333
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=2.6e-10 Score=100.06 Aligned_cols=138 Identities=15% Similarity=0.155 Sum_probs=86.0
Q ss_pred hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccc--ccCCcCeEeCCCC--cCCcc-----
Q 043452 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM--NLTQLGWLSLDNN--NFSGR----- 313 (384)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~--~~~~~----- 313 (384)
..+..+|+|+.|++.++.-. ..+. + ..++|+.|++..+.+.......+. .+++|+.|+|+.+ ...+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 34455666666666665211 1111 1 256677777766665544333333 5677777776421 11101
Q ss_pred cchhhh-hccccceEEEcCCCccccccchhhh---ccCCccEEEccCcccccccc----cccccCCCCceEeCcCCCCC
Q 043452 314 ISNGFL-SSARSLQVLDISNNKLVGQIPSWIG---NFSSLALLTVSKNLLEGNIP----VQLKNLEALEILDVSENNLS 384 (384)
Q Consensus 314 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~s 384 (384)
+...+. ..+|+|+.|++.+|.+.+..+.++. .+++|+.|+|+.|.+.+..+ ..+..+++|+.|++++|.|+
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 111111 2468999999999998865555554 58899999999999987543 33456899999999999886
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.3e-10 Score=100.74 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=41.1
Q ss_pred hccCCcceEEEccC-CcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCC
Q 043452 270 LTGCFSLWLLDLSH-NSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS 348 (384)
Q Consensus 270 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 348 (384)
+..+++|++|++++ |.+....+..|..+++|+.|+|++|.++ .+++..+..+++|+.|+|++|.+....+..+..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-
Confidence 33444455555553 4554444444445555555555555544 23333344445555555555554433333333333
Q ss_pred ccEEEccCcccc
Q 043452 349 LALLTVSKNLLE 360 (384)
Q Consensus 349 L~~L~l~~~~~~ 360 (384)
|+.|++.+|++.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 555555555443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=1.1e-09 Score=86.75 Aligned_cols=119 Identities=16% Similarity=0.052 Sum_probs=67.7
Q ss_pred chhccCCCCCcEEEeecc-cccccccc---chhccCCcceEEEccCCccccccc----ccccccCCcCeEeCCCCcCCcc
Q 043452 242 SSSISEMKDLRFLDLSRN-QFSGELSA---PLLTGCFSLWLLDLSHNSFCGQVS----PKFMNLTQLGWLSLDNNNFSGR 313 (384)
Q Consensus 242 ~~~~~~~~~L~~L~l~~~-~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~ 313 (384)
...+...+.|++|++++| .+.+.... ..+...++|++|++++|.+.+... ..+...+.|++|++++|.+++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556677777777777 66533222 233445667777777777665432 2333446677777777776643
Q ss_pred cchh---hhhccccceEEEc--CCCccccc----cchhhhccCCccEEEccCcccc
Q 043452 314 ISNG---FLSSARSLQVLDI--SNNKLVGQ----IPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 314 ~~~~---~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
.... .+...++|++|++ ++|.+.+. +..++...++|++|++++|++.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3222 2233456777777 55666543 2334445566777777766664
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.90 E-value=9.7e-10 Score=84.81 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=74.2
Q ss_pred CcceEEEccCCcccccccccccccCCcCeEeCCCCc-CCcccchhhhh---ccccceEEEcCCC-ccccccchhhhccCC
Q 043452 274 FSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLS---SARSLQVLDISNN-KLVGQIPSWIGNFSS 348 (384)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~---~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 348 (384)
..|++|++++|.+++.....+..|++|+.|++++|. +++.....+.. .+++|++|++++| .+++....++..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368888888888877777777888889999998885 66444444433 1468999999998 588888888889999
Q ss_pred ccEEEccCcc-ccccc--cccc-ccCCCCce
Q 043452 349 LALLTVSKNL-LEGNI--PVQL-KNLEALEI 375 (384)
Q Consensus 349 L~~L~l~~~~-~~~~~--~~~~-~~~~~L~~ 375 (384)
|+.|++++|+ +++.. ...+ ..+|+++.
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999996 54321 1222 35677653
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.89 E-value=6.9e-10 Score=85.66 Aligned_cols=85 Identities=6% Similarity=0.039 Sum_probs=72.9
Q ss_pred cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCC-ccccccchhhhcc----CCccEEEccCcc-cccccccccccC
Q 043452 297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIGNF----SSLALLTVSKNL-LEGNIPVQLKNL 370 (384)
Q Consensus 297 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~ 370 (384)
-..|+.|++++|.+++..... +..|++|++|++++| .+++.....++.+ ++|+.|+|++|. +++.....+..|
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 356999999999988655544 468899999999999 5898888888874 589999999995 888777888999
Q ss_pred CCCceEeCcCCC
Q 043452 371 EALEILDVSENN 382 (384)
Q Consensus 371 ~~L~~l~l~~~~ 382 (384)
++|+.|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999996
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=4.9e-09 Score=92.22 Aligned_cols=102 Identities=23% Similarity=0.223 Sum_probs=63.7
Q ss_pred EEeCcCc-ccccccchhhhhccccccEEecCC-CccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECC
Q 043452 9 ALDLSYT-GINGSLENQGICELKNLIELNLEG-NAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS 86 (384)
Q Consensus 9 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 86 (384)
.++++++ .++ .+|. +..+.+|++|++++ |.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3566665 565 5543 66667777777774 66665555667777777777777777776666667777777777777
Q ss_pred CCccccccccccCCCCCchhhhhhhcccC
Q 043452 87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115 (384)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 115 (384)
+|.+++.. ...+..++ |+.|.+..+..
T Consensus 89 ~N~l~~~~-~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALESLS-WKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SSCCSCCC-STTTCSCC-CCEEECCSSCC
T ss_pred CCccceeC-HHHcccCC-ceEEEeeCCCc
Confidence 77766442 23333333 66666655443
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=9.1e-09 Score=81.51 Aligned_cols=113 Identities=10% Similarity=0.079 Sum_probs=61.8
Q ss_pred ccCCcEEEccCC-cCCCc----cchhccCCCCCcEEEeecccccccccc---chhccCCcceEEEccCCcccccc----c
Q 043452 224 LQKLVYLDMSKN-KFEGS----ISSSISEMKDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCGQV----S 291 (384)
Q Consensus 224 ~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~----~ 291 (384)
.+.|++|++++| .+.+. ....+...++|++|++++|.+.+.... ..+...++|++|++++|.+.+.. .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 456666777666 65532 223344556666777776666533221 22334456666777666666532 3
Q ss_pred ccccccCCcCeEeC--CCCcCCcccch---hhhhccccceEEEcCCCccc
Q 043452 292 PKFMNLTQLGWLSL--DNNNFSGRISN---GFLSSARSLQVLDISNNKLV 336 (384)
Q Consensus 292 ~~~~~~~~L~~l~l--~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 336 (384)
..+..++.|++|++ ++|.+++.... ..+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34445566667776 55666533222 22333456667777666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=3.3e-07 Score=76.27 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=41.2
Q ss_pred ccCCcCeEeCCCCcCCcccc-hhhhhccccceEEEcCCCccccccchhhhccC--CccEEEccCcccccccc-------c
Q 043452 296 NLTQLGWLSLDNNNFSGRIS-NGFLSSARSLQVLDISNNKLVGQIPSWIGNFS--SLALLTVSKNLLEGNIP-------V 365 (384)
Q Consensus 296 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~-------~ 365 (384)
.++.|+.|+|++|.+++... +..+..+++|+.|+|++|.+.+. ..+..++ +|++|++++|++.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555556666655553111 12344456666666666665533 2222223 66666666666654322 2
Q ss_pred ccccCCCCceEe
Q 043452 366 QLKNLEALEILD 377 (384)
Q Consensus 366 ~~~~~~~L~~l~ 377 (384)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345666766664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=5.9e-06 Score=68.71 Aligned_cols=83 Identities=20% Similarity=0.198 Sum_probs=55.3
Q ss_pred ccCCcceEEEccCCcccc--cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccc-------h
Q 043452 271 TGCFSLWLLDLSHNSFCG--QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP-------S 341 (384)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~ 341 (384)
.++++|++|++++|.+.+ ..+..+..+++|+.|+|++|.+.+......+..+ .|++|++++|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 456778888888887776 3345556778888888888888744222222222 78888888888765333 3
Q ss_pred hhhccCCccEEEc
Q 043452 342 WIGNFSSLALLTV 354 (384)
Q Consensus 342 ~~~~~~~L~~L~l 354 (384)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4677888887763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=1.5e-05 Score=62.69 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=69.3
Q ss_pred hhccCCCCCcEEEeecc-ccccccc---cchhccCCcceEEEccCCcccccccc----cccccCCcCeEeCCCCcCCccc
Q 043452 243 SSISEMKDLRFLDLSRN-QFSGELS---APLLTGCFSLWLLDLSHNSFCGQVSP----KFMNLTQLGWLSLDNNNFSGRI 314 (384)
Q Consensus 243 ~~~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~ 314 (384)
..+...+.|+.|+++++ .+.+... .+.+..-..|+.|++++|.+.+.... ++...+.|++|+|++|.|++..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455677888888775 6653322 22334456777888887777764433 3335567777888777776444
Q ss_pred chhhhh---ccccceEEEcCCC---cccc----ccchhhhccCCccEEEccCccc
Q 043452 315 SNGFLS---SARSLQVLDISNN---KLVG----QIPSWIGNFSSLALLTVSKNLL 359 (384)
Q Consensus 315 ~~~~~~---~~~~L~~L~l~~~---~~~~----~~~~~~~~~~~L~~L~l~~~~~ 359 (384)
...+.. ....|++|++++| .+.+ .+.+++..-++|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 333322 2346777777754 2332 2345556667777777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.83 E-value=1.7e-05 Score=62.42 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred ccCCcEEEccCC-cCCCc----cchhccCCCCCcEEEeeccccccccc---cchhccCCcceEEEccCCcccccccc---
Q 043452 224 LQKLVYLDMSKN-KFEGS----ISSSISEMKDLRFLDLSRNQFSGELS---APLLTGCFSLWLLDLSHNSFCGQVSP--- 292 (384)
Q Consensus 224 ~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~--- 292 (384)
-+.|++|+++++ .+.+. +...+.....|+.|++++|.+.+... .+.+..-+.|++|+++.|.+.+....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356888888775 66542 33445566778888888888764322 23334456788888888888764433
Q ss_pred -cccccCCcCeEeCCCC---cCCcccc---hhhhhccccceEEEcCCCcc
Q 043452 293 -KFMNLTQLGWLSLDNN---NFSGRIS---NGFLSSARSLQVLDISNNKL 335 (384)
Q Consensus 293 -~~~~~~~L~~l~l~~~---~~~~~~~---~~~~~~~~~L~~L~l~~~~~ 335 (384)
++...+.|++|+++++ .+.+... ..++...+.|++|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3445567888888754 3332211 12334446788888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.0025 Score=46.56 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=35.2
Q ss_pred eEeCCCCcCC-cccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452 302 WLSLDNNNFS-GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360 (384)
Q Consensus 302 ~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (384)
.++-++..++ ..++..+ .++|+.|+|++|.++...+++|..+++|+.|+|++|+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666554 1233221 136777777777777555666777777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.75 E-value=0.017 Score=42.04 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=37.1
Q ss_pred cEEecCCCccc-cCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccc
Q 043452 33 IELNLEGNAIE-GPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ 91 (384)
Q Consensus 33 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 91 (384)
..++.++..++ ..+|..+. ++|++|+|++|.++...+..|..+++|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666666665 23444332 36778888888777666667777788888888877553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.69 E-value=0.17 Score=34.69 Aligned_cols=48 Identities=6% Similarity=0.149 Sum_probs=37.7
Q ss_pred CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCc
Q 043452 308 NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357 (384)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 357 (384)
..++ .+....|.+|.+|+++.+..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455 566777888999999999874 55577788999999999988775
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.09 E-value=0.71 Score=31.54 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=20.8
Q ss_pred CCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCC
Q 043452 45 PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87 (384)
Q Consensus 45 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 87 (384)
+...+|..|.+|+.+.|+.+ ++.+...+|.+|.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445555555555555543 2324444555555555555543
Done!