Query 043453
Match_columns 134
No_of_seqs 111 out of 349
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05938 Self-incomp_S1: Plant 100.0 4.3E-37 9.4E-42 214.6 14.2 101 31-132 1-110 (110)
2 TIGR02376 Cu_nitrite_red nitri 88.3 1.7 3.7E-05 35.3 6.3 56 31-86 69-126 (311)
3 PF07732 Cu-oxidase_3: Multico 83.9 3.5 7.7E-05 28.7 5.3 55 31-86 36-99 (117)
4 PF13956 Ibs_toxin: Toxin Ibs, 79.9 0.78 1.7E-05 22.1 0.5 16 1-16 1-16 (19)
5 PRK02710 plastocyanin; Provisi 76.6 9.8 0.00021 26.4 5.6 51 31-87 55-107 (119)
6 TIGR03388 ascorbase L-ascorbat 67.7 18 0.00039 31.6 6.3 58 31-88 42-107 (541)
7 PLN02604 oxidoreductase 67.6 17 0.00037 32.0 6.1 59 31-89 65-131 (566)
8 TIGR02656 cyanin_plasto plasto 66.3 26 0.00056 23.3 5.6 52 30-86 24-86 (99)
9 TIGR02657 amicyanin amicyanin. 65.9 20 0.00043 23.1 4.8 55 29-86 17-72 (83)
10 PF13473 Cupredoxin_1: Cupredo 64.8 15 0.00033 24.5 4.3 49 31-86 45-94 (104)
11 PLN02191 L-ascorbate oxidase 57.5 29 0.00063 30.7 5.7 59 31-89 64-130 (574)
12 TIGR03096 nitroso_cyanin nitro 56.0 44 0.00095 24.2 5.5 31 57-87 90-121 (135)
13 TIGR03102 halo_cynanin halocya 54.4 72 0.0016 22.3 6.4 57 29-88 48-104 (115)
14 PLN02168 copper ion binding / 53.5 33 0.00072 30.3 5.4 58 31-89 67-132 (545)
15 TIGR01480 copper_res_A copper- 52.7 39 0.00084 30.1 5.7 56 31-87 86-147 (587)
16 PRK10883 FtsI repressor; Provi 50.9 51 0.0011 28.4 6.1 44 31-75 87-133 (471)
17 TIGR03390 ascorbOXfungal L-asc 47.3 53 0.0011 28.8 5.7 58 31-88 49-116 (538)
18 PRK10965 multicopper oxidase; 47.2 55 0.0012 28.6 5.8 44 31-75 87-133 (523)
19 PLN02835 oxidoreductase 46.0 62 0.0014 28.4 6.0 58 31-89 70-135 (539)
20 PLN00044 multi-copper oxidase- 44.2 61 0.0013 29.0 5.7 65 32-97 71-148 (596)
21 PLN02354 copper ion binding / 43.8 53 0.0011 29.0 5.2 58 31-89 68-133 (552)
22 PF08194 DIM: DIM protein; In 42.7 17 0.00037 20.5 1.3 6 1-6 1-6 (36)
23 PF13157 DUF3992: Protein of u 42.6 90 0.002 21.1 5.1 42 32-74 29-70 (92)
24 PLN02792 oxidoreductase 42.5 61 0.0013 28.5 5.4 56 31-89 57-122 (536)
25 TIGR03389 laccase laccase, pla 42.4 72 0.0016 27.9 5.8 56 31-88 44-109 (539)
26 PF04202 Mfp-3: Foot protein 3 37.8 14 0.0003 23.8 0.5 14 1-14 1-14 (71)
27 PF06369 Anemone_cytotox: Sea 37.1 93 0.002 23.6 4.9 47 29-75 29-76 (176)
28 PF00127 Copper-bind: Copper b 35.9 46 0.001 22.0 2.9 54 30-86 24-86 (99)
29 cd05751 Ig1_LILRB1_like First 33.3 1.3E+02 0.0028 19.2 5.4 15 41-55 14-28 (91)
30 PF04379 DUF525: Protein of un 29.9 1.1E+02 0.0023 20.5 3.9 42 29-71 14-68 (90)
31 TIGR01480 copper_res_A copper- 29.5 1.1E+02 0.0025 27.2 5.0 56 31-87 509-573 (587)
32 PLN02991 oxidoreductase 28.1 1.3E+02 0.0029 26.5 5.1 58 31-89 69-134 (543)
33 PRK10101 csgB curlin minor sub 27.4 28 0.00061 25.7 0.7 17 1-17 1-17 (151)
34 PRK05461 apaG CO2+/MG2+ efflux 26.8 1.7E+02 0.0036 20.8 4.6 42 29-71 31-85 (127)
35 PF10855 DUF2648: Protein of u 23.0 41 0.00088 18.5 0.7 17 1-17 1-17 (33)
36 PF06650 DUF1162: Protein of u 22.8 1.7E+02 0.0037 22.5 4.4 37 35-74 124-160 (277)
37 PF02553 CbiN: Cobalt transpor 22.3 25 0.00053 23.0 -0.4 13 1-13 1-13 (74)
38 COG2967 ApaG Uncharacterized p 21.8 2.2E+02 0.0048 20.4 4.4 42 29-71 30-84 (126)
39 PF11284 DUF3085: Protein of u 21.7 75 0.0016 21.4 1.9 16 107-122 3-18 (90)
40 PF11523 DUF3223: Protein of u 20.3 67 0.0014 20.7 1.4 12 105-116 56-67 (76)
No 1
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=100.00 E-value=4.3e-37 Score=214.60 Aligned_cols=101 Identities=47% Similarity=0.874 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCCeeEEEeceeCCCCCcceecCCCCeEEEEEecCCCCceeEEEEeEeCC----eEEEEEEeCCC--C--
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSKDDDVGEHVPSPNQSYSFSFHDKLFGQTLFYCSFKWNN----GGLHIYIQDVT--K-- 102 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Skd~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~~----~~f~~y~~~rd--~-- 102 (134)
++|+|+|+| +++..|.|||+|+|+|||.|.|+||++|+|+|+++++++|+|+|+|+|.+ +.|+||+++++ +
T Consensus 1 ~~V~I~N~L-~~~~~L~vhC~S~d~Dlg~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~~~~~~~~~f~vy~~~~~~~~c~ 79 (110)
T PF05938_consen 1 NHVVIINNL-GPGKILTVHCKSKDDDLGWHVLKPGQSYSFSFRDNFFGTTLFWCHFRWPGGKYHHSFDVYRSSRDSRRCR 79 (110)
T ss_pred CEEEEEECC-CCCCeEEEEeeCCCccCCCEECCCCCEEEEEEecCcCCceeEEEEEEECCccEEEEEEEEeccccccCCC
Confidence 379999999 66889999999999999999999999999999999999999999999954 69999999988 4
Q ss_pred CC-ceEEEEecCeeEEecccCCCCCeEecCC
Q 043453 103 CS-TCYWSILESVACLRYDYEKSQPTCYGWS 132 (134)
Q Consensus 103 C~-~c~W~~~~dGiy~~~~~~~~~~~~~~W~ 132 (134)
|+ .|.|+||+||||+.+++.+++++||+|+
T Consensus 80 c~~~c~W~ir~dGiy~~~~~~~~~~~~y~W~ 110 (110)
T PF05938_consen 80 CGQTCNWSIREDGIYFSNNKNKPWKKCYPWN 110 (110)
T ss_pred CCcEEEEEEECCEeEEEcCCCccCcEEeCCC
Confidence 56 6999999999999999877779999996
No 2
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=88.26 E-value=1.7 Score=35.34 Aligned_cols=56 Identities=11% Similarity=0.200 Sum_probs=40.5
Q ss_pred eEEEEEeCCCC-CCeeEEEeceeCCCC-CcceecCCCCeEEEEEecCCCCceeEEEEe
Q 043453 31 RVVMITNNTSE-GRFDLTVHCKSKDDD-VGEHVPSPNQSYSFSFHDKLFGQTLFYCSF 86 (134)
Q Consensus 31 ~~V~I~N~l~~-~~~~L~vhC~Skd~D-lG~~~L~~g~~~~f~F~~~~~~~T~f~C~f 86 (134)
..|+++|.++. ..+.+.+|-....++ -+...++||+++.++|...--|+-.|.|+.
T Consensus 69 v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~ 126 (311)
T TIGR02376 69 VELTLINPPTNTMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAP 126 (311)
T ss_pred EEEEEEeCCCCCCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCC
Confidence 35889999831 246788886543333 234568999999999998767888888994
No 3
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=83.86 E-value=3.5 Score=28.67 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=38.4
Q ss_pred eEEEEEeCCCCCCeeEEEeceeCCC--------CCcceecCCCCeEEEEEecCC-CCceeEEEEe
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSKDD--------DVGEHVPSPNQSYSFSFHDKL-FGQTLFYCSF 86 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Skd~--------DlG~~~L~~g~~~~f~F~~~~-~~~T~f~C~f 86 (134)
..|+++|.| .....|..|=-.-.. ......+.||+++.++|..+- .|+=.|.|+.
T Consensus 36 v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~ 99 (117)
T PF07732_consen 36 VRITVTNNL-DEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHV 99 (117)
T ss_dssp EEEEEEEES-SSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECS
T ss_pred eEEEEEecc-ccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCC
Confidence 469999999 556788888644222 122356899999999999875 5555555654
No 4
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=79.85 E-value=0.78 Score=22.10 Aligned_cols=16 Identities=25% Similarity=0.413 Sum_probs=10.6
Q ss_pred CCceeehhhhhhhhhe
Q 043453 1 MKNLKEIMLLVTLLAA 16 (134)
Q Consensus 1 m~n~~~~~~~i~~l~~ 16 (134)
||.+.++++++++++|
T Consensus 1 MMk~vIIlvvLLliSf 16 (19)
T PF13956_consen 1 MMKLVIILVVLLLISF 16 (19)
T ss_pred CceehHHHHHHHhccc
Confidence 7887776666655555
No 5
>PRK02710 plastocyanin; Provisional
Probab=76.61 E-value=9.8 Score=26.41 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCCCeeEEEeceeCCCCCcc--eecCCCCeEEEEEecCCCCceeEEEEeE
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSKDDDVGE--HVPSPNQSYSFSFHDKLFGQTLFYCSFK 87 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Skd~DlG~--~~L~~g~~~~f~F~~~~~~~T~f~C~f~ 87 (134)
.+|+++|.= ...+++.+. +. +.+.. ..+.||+++++.|.+ -|.-.|+|...
T Consensus 55 d~V~~~N~~-~~~H~v~~~--~~-~~~~~~~~~~~pg~t~~~tF~~--~G~y~y~C~~H 107 (119)
T PRK02710 55 DTVKWVNNK-LAPHNAVFD--GA-KELSHKDLAFAPGESWEETFSE--AGTYTYYCEPH 107 (119)
T ss_pred CEEEEEECC-CCCceEEec--CC-ccccccccccCCCCEEEEEecC--CEEEEEEcCCC
Confidence 357788764 334556553 22 22211 247899999999998 48999999963
No 6
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=67.75 E-value=18 Score=31.64 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=38.4
Q ss_pred eEEEEEeCCCCCCeeEEEeceeC------CCCCc--ceecCCCCeEEEEEecCCCCceeEEEEeEe
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSK------DDDVG--EHVPSPNQSYSFSFHDKLFGQTLFYCSFKW 88 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Sk------d~DlG--~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w 88 (134)
..|.++|.|+..+..+..|=-.. |-.-| ...++||++|.++|...--|+-.|.|+...
T Consensus 42 v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~ 107 (541)
T TIGR03388 42 IVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGM 107 (541)
T ss_pred EEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchH
Confidence 35889999943344555554321 11112 235899999999999776788888899643
No 7
>PLN02604 oxidoreductase
Probab=67.60 E-value=17 Score=32.05 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=39.9
Q ss_pred eEEEEEeCCCCCCeeEEEeceeC------CCC--CcceecCCCCeEEEEEecCCCCceeEEEEeEeC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSK------DDD--VGEHVPSPNQSYSFSFHDKLFGQTLFYCSFKWN 89 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Sk------d~D--lG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~ 89 (134)
..|+++|.|......+..|=-.. |.- +-...++||+++.++|...--|+-.|.|+...+
T Consensus 65 v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q 131 (566)
T PLN02604 65 VIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQ 131 (566)
T ss_pred EEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHH
Confidence 35889999833346677775421 111 112368999999999997767888888988543
No 8
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=66.27 E-value=26 Score=23.31 Aligned_cols=52 Identities=25% Similarity=0.432 Sum_probs=34.1
Q ss_pred ceEEEEEeCCCCCCeeEEEeceeCCCC---------C--cceecCCCCeEEEEEecCCCCceeEEEEe
Q 043453 30 KRVVMITNNTSEGRFDLTVHCKSKDDD---------V--GEHVPSPNQSYSFSFHDKLFGQTLFYCSF 86 (134)
Q Consensus 30 k~~V~I~N~l~~~~~~L~vhC~Skd~D---------l--G~~~L~~g~~~~f~F~~~~~~~T~f~C~f 86 (134)
..+|+++|.= ...+.+.+. +..-+ + ....+.||+++++.|.. -|+-.|+|..
T Consensus 24 G~~V~~~N~~-~~~H~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~y~C~~ 86 (99)
T TIGR02656 24 GDTVEWVNNK-GGPHNVVFD--EDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST--PGTYTFYCEP 86 (99)
T ss_pred CCEEEEEECC-CCCceEEEC--CCCCccchhhhcccccccccccCCCCEEEEEeCC--CEEEEEEcCC
Confidence 3468888864 334666653 21111 1 12346899999999997 4888899984
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=65.85 E-value=20 Score=23.07 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred CceEEEEEeCCCCCCeeEEEecee-CCCCCcceecCCCCeEEEEEecCCCCceeEEEEe
Q 043453 29 PKRVVMITNNTSEGRFDLTVHCKS-KDDDVGEHVPSPNQSYSFSFHDKLFGQTLFYCSF 86 (134)
Q Consensus 29 ~k~~V~I~N~l~~~~~~L~vhC~S-kd~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f 86 (134)
+.-+|++.|+= +..+.+...=-+ .+.+...-.+.+|+.|++.|... |.-.|.|..
T Consensus 17 ~GdtVt~~N~d-~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~~~--G~y~y~C~~ 72 (83)
T TIGR02657 17 VGDTVTWINRE-AMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEA--GTYDYHCTP 72 (83)
T ss_pred CCCEEEEEECC-CCCccEEecCCCCccccccccccCCCCEEEEECCCC--EEEEEEcCC
Confidence 45579999985 334666553111 12333334578899999999864 788899987
No 10
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=64.80 E-value=15 Score=24.48 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=28.3
Q ss_pred eEEEEEeCCCCCCeeEEEeceeCCCCCcc-eecCCCCeEEEEEecCCCCceeEEEEe
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSKDDDVGE-HVPSPNQSYSFSFHDKLFGQTLFYCSF 86 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Skd~DlG~-~~L~~g~~~~f~F~~~~~~~T~f~C~f 86 (134)
.+|.++|.= ...+.+.+ ++++. ..|.||++.++.|.+.--|+=.|+|.+
T Consensus 45 v~l~~~N~~-~~~h~~~i------~~~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~ 94 (104)
T PF13473_consen 45 VTLTFTNND-SRPHEFVI------PDLGISKVLPPGETATVTFTPLKPGEYEFYCTM 94 (104)
T ss_dssp EEEEEEE-S-SS-EEEEE------GGGTEEEEE-TT-EEEEEEEE-S-EEEEEB-SS
T ss_pred EEEEEEECC-CCcEEEEE------CCCceEEEECCCCEEEEEEcCCCCEEEEEEcCC
Confidence 356777764 32333333 22555 578999999999977666888899987
No 11
>PLN02191 L-ascorbate oxidase
Probab=57.51 E-value=29 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=37.9
Q ss_pred eEEEEEeCCCCCCeeEEEeceeCC----CC--Cc--ceecCCCCeEEEEEecCCCCceeEEEEeEeC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSKD----DD--VG--EHVPSPNQSYSFSFHDKLFGQTLFYCSFKWN 89 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Skd----~D--lG--~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~ 89 (134)
..|++.|.|+..+..|..|=-... .| -| ..-++||++|.++|...-.|+-.|.|+...+
T Consensus 64 v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q 130 (574)
T PLN02191 64 IVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQ 130 (574)
T ss_pred EEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHH
Confidence 358899999423344554442211 12 12 2468999999999997766777788887543
No 12
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=55.97 E-value=44 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.2
Q ss_pred Ccce-ecCCCCeEEEEEecCCCCceeEEEEeE
Q 043453 57 VGEH-VPSPNQSYSFSFHDKLFGQTLFYCSFK 87 (134)
Q Consensus 57 lG~~-~L~~g~~~~f~F~~~~~~~T~f~C~f~ 87 (134)
+|.. .|+||+...++|...--|+=.|+|.+.
T Consensus 90 ~gis~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 90 YGISEVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred CCcceEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 3443 589999999999987778888999983
No 13
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=54.42 E-value=72 Score=22.27 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=36.4
Q ss_pred CceEEEEEeCCCCCCeeEEEeceeCCCCCcceecCCCCeEEEEEecCCCCceeEEEEeEe
Q 043453 29 PKRVVMITNNTSEGRFDLTVHCKSKDDDVGEHVPSPNQSYSFSFHDKLFGQTLFYCSFKW 88 (134)
Q Consensus 29 ~k~~V~I~N~l~~~~~~L~vhC~Skd~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w 88 (134)
+.-+|+.+|+-....+.+..- ....-|-+...+.+|++|++.|.. -|.=.|.|....
T Consensus 48 ~GdTVtw~~~~d~~~HnV~s~-~~~~f~s~~~~~~~G~t~s~Tf~~--~G~Y~Y~C~pH~ 104 (115)
T TIGR03102 48 PGTTVVWEWTGEGGGHNVVSD-GDGDLDESERVSEEGTTYEHTFEE--PGIYLYVCVPHE 104 (115)
T ss_pred CCCEEEEEECCCCCCEEEEEC-CCCCccccccccCCCCEEEEEecC--CcEEEEEccCCC
Confidence 455799997652334555531 001123344456889999999975 488899999854
No 14
>PLN02168 copper ion binding / pectinesterase
Probab=53.48 E-value=33 Score=30.25 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=37.1
Q ss_pred eEEEEEeCCCCCCeeEEEeceeC-----CCC-Ccc-eecCCCCeEEEEEecC-CCCceeEEEEeEeC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSK-----DDD-VGE-HVPSPNQSYSFSFHDK-LFGQTLFYCSFKWN 89 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Sk-----d~D-lG~-~~L~~g~~~~f~F~~~-~~~~T~f~C~f~w~ 89 (134)
..|.++|.| +.+..|.-|=-.- .|- -|. .-++||++|.++|... --|+--|.+++..+
T Consensus 67 v~V~v~N~L-~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q 132 (545)
T PLN02168 67 INVNIFNNL-TEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQ 132 (545)
T ss_pred EEEEEEeCC-CCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhh
Confidence 358899999 4456666664321 122 232 2489999999999963 45666666776543
No 15
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=52.73 E-value=39 Score=30.14 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=36.1
Q ss_pred eEEEEEeCCCCCCeeEEEeceeC--C-C---CCcceecCCCCeEEEEEecCCCCceeEEEEeE
Q 043453 31 RVVMITNNTSEGRFDLTVHCKSK--D-D---DVGEHVPSPNQSYSFSFHDKLFGQTLFYCSFK 87 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~Sk--d-~---DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~ 87 (134)
..|++.|.| +....|..|=-.- . | ++....++||++|.++|...--|+--|.|+..
T Consensus 86 v~v~v~N~l-~~~tsiHwHGl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~ 147 (587)
T TIGR01480 86 VRLRVTNTL-PEDTSIHWHGILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSG 147 (587)
T ss_pred EEEEEEcCC-CCCceEEcCCCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCch
Confidence 458899999 4455666664321 1 1 12234689999999999975445555667653
No 16
>PRK10883 FtsI repressor; Provisional
Probab=50.94 E-value=51 Score=28.38 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCCCeeEEEecee---CCCCCcceecCCCCeEEEEEecC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS---KDDDVGEHVPSPNQSYSFSFHDK 75 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S---kd~DlG~~~L~~g~~~~f~F~~~ 75 (134)
..|.+.|.| +....|..|=-- ..+|--...++||++|.+.|..+
T Consensus 87 v~v~v~N~L-~~~ttiHwHGl~~~~~~~~g~~~~I~PG~~~~y~f~~~ 133 (471)
T PRK10883 87 VKLIYSNRL-TEPVSMTVSGLQVPGPLMGGPARMMSPNADWAPVLPIR 133 (471)
T ss_pred EEEEEEeCC-CCCCceeECCccCCCCCCCCccccCCCCCeEEEEEecC
Confidence 458899999 434555555421 22332234679999999999743
No 17
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=47.26 E-value=53 Score=28.78 Aligned_cols=58 Identities=9% Similarity=0.188 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCCCeeEEEecee------CCCCCcce--ecCCCCeEEEEEecC--CCCceeEEEEeEe
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS------KDDDVGEH--VPSPNQSYSFSFHDK--LFGQTLFYCSFKW 88 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S------kd~DlG~~--~L~~g~~~~f~F~~~--~~~~T~f~C~f~w 88 (134)
..|+++|.|+..+..|..|=-. .|---|.. -++||++|.++|... --|+--|.|+...
T Consensus 49 v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~ 116 (538)
T TIGR03390 49 TWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGF 116 (538)
T ss_pred EEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCch
Confidence 4699999994234445555431 12112221 489999999999853 3566666677643
No 18
>PRK10965 multicopper oxidase; Provisional
Probab=47.18 E-value=55 Score=28.65 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCCCeeEEEecee--CCCCCc-ceecCCCCeEEEEEecC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS--KDDDVG-EHVPSPNQSYSFSFHDK 75 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S--kd~DlG-~~~L~~g~~~~f~F~~~ 75 (134)
..|+++|.| +....|..|=-. ..-|=+ ...++||++|.++|..+
T Consensus 87 v~v~~~N~L-~~~ttiHwHGl~~~~~~DG~pq~~I~PG~s~~Y~f~~~ 133 (523)
T PRK10965 87 VTVDITNQL-PEETTLHWHGLEVPGEVDGGPQGIIAPGGKRTVTFTVD 133 (523)
T ss_pred EEEEEEECC-CCCccEEcccccCCCccCCCCCCCCCCCCEEEEEeccC
Confidence 458999999 434555555422 222212 34689999999999865
No 19
>PLN02835 oxidoreductase
Probab=46.01 E-value=62 Score=28.44 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCCCeeEEEecee----CCCC--Ccce-ecCCCCeEEEEEec-CCCCceeEEEEeEeC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS----KDDD--VGEH-VPSPNQSYSFSFHD-KLFGQTLFYCSFKWN 89 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S----kd~D--lG~~-~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~ 89 (134)
..|.++|+| +.+..+.-|=-. ...| .|.+ -++||++|.++|.. +-.|+--|.++..++
T Consensus 70 v~v~v~N~L-~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q 135 (539)
T PLN02835 70 IILNLINKL-DQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFH 135 (539)
T ss_pred EEEEEEeCC-CCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccch
Confidence 458899999 434555555421 1122 2222 48999999999974 345665566666554
No 20
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=44.23 E-value=61 Score=29.03 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=38.3
Q ss_pred EEEEEeCCCCCCeeEEEecee----CCCC--Ccce-ecCCCCeEEEEEecC-CCCceeEEEEeEeC---C--eEEEEEE
Q 043453 32 VVMITNNTSEGRFDLTVHCKS----KDDD--VGEH-VPSPNQSYSFSFHDK-LFGQTLFYCSFKWN---N--GGLHIYI 97 (134)
Q Consensus 32 ~V~I~N~l~~~~~~L~vhC~S----kd~D--lG~~-~L~~g~~~~f~F~~~-~~~~T~f~C~f~w~---~--~~f~~y~ 97 (134)
.|+|+|.| +.+..+.-|=-. ...| -|.+ -++||++|.++|... --|+--|..++.++ | --+.|+.
T Consensus 71 ~V~V~N~L-~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~ 148 (596)
T PLN00044 71 VVNVRNAL-DEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINN 148 (596)
T ss_pred EEEEEeCC-CCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcC
Confidence 47788999 434444444311 1122 2222 489999999999863 34665566777664 2 2455554
No 21
>PLN02354 copper ion binding / oxidoreductase
Probab=43.78 E-value=53 Score=29.00 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCCCeeEEEece----eCCCC--Ccce-ecCCCCeEEEEEec-CCCCceeEEEEeEeC
Q 043453 31 RVVMITNNTSEGRFDLTVHCK----SKDDD--VGEH-VPSPNQSYSFSFHD-KLFGQTLFYCSFKWN 89 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~----Skd~D--lG~~-~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~ 89 (134)
..|+|+|+| +.+..+.-|=- +...| -|.+ -++||++|.++|.. .-.|+.-|.+++.++
T Consensus 68 v~V~v~N~l-~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q 133 (552)
T PLN02354 68 IVINVFNNL-DEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMH 133 (552)
T ss_pred EEEEEEECC-CCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccce
Confidence 358899999 43444443331 11122 2222 48999999999985 345776676777654
No 22
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=42.73 E-value=17 Score=20.52 Aligned_cols=6 Identities=50% Similarity=0.390 Sum_probs=4.2
Q ss_pred CCceee
Q 043453 1 MKNLKE 6 (134)
Q Consensus 1 m~n~~~ 6 (134)
||.+.+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 777765
No 23
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=42.60 E-value=90 Score=21.11 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=30.4
Q ss_pred EEEEEeCCCCCCeeEEEeceeCCCCCcceecCCCCeEEEEEec
Q 043453 32 VVMITNNTSEGRFDLTVHCKSKDDDVGEHVPSPNQSYSFSFHD 74 (134)
Q Consensus 32 ~V~I~N~l~~~~~~L~vhC~Skd~DlG~~~L~~g~~~~f~F~~ 74 (134)
++.|.|+- +.+.++.|.=-+.........++||++-+|-+++
T Consensus 29 Ti~V~n~~-~~~~~itV~i~~~g~~v~tftV~pG~S~S~T~~~ 70 (92)
T PF13157_consen 29 TIYVYNDT-GSGNPITVTILQNGTAVNTFTVQPGNSRSFTVRD 70 (92)
T ss_pred EEEEEECC-CCCCCEEEEEEECCcEEeEEEECCCceEEEEecc
Confidence 58899998 4344444443365666777789999999998875
No 24
>PLN02792 oxidoreductase
Probab=42.53 E-value=61 Score=28.52 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCCCeeEEEecee----C---CCC-Ccc-eecCCCCeEEEEEecC-CCCceeEEEEeEeC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS----K---DDD-VGE-HVPSPNQSYSFSFHDK-LFGQTLFYCSFKWN 89 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S----k---d~D-lG~-~~L~~g~~~~f~F~~~-~~~~T~f~C~f~w~ 89 (134)
..|.++|+| .. ...||--. . .|- .|. .-++||++|.++|... --|+--|.+++.++
T Consensus 57 v~V~v~N~L-~~--~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q 122 (536)
T PLN02792 57 LVINVHNDL-DE--PFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQ 122 (536)
T ss_pred EEEEEEeCC-CC--CcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchh
Confidence 358999999 43 34555532 1 121 222 2489999999999963 46776677887665
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=42.39 E-value=72 Score=27.87 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCCCeeEEEecee--CC--CCCcc-----eecCCCCeEEEEEec-CCCCceeEEEEeEe
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS--KD--DDVGE-----HVPSPNQSYSFSFHD-KLFGQTLFYCSFKW 88 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S--kd--~DlG~-----~~L~~g~~~~f~F~~-~~~~~T~f~C~f~w 88 (134)
..|+++|+| +....+..|=-. .. .| |+ --++||++|.++|.. .--|+--|.|+...
T Consensus 44 v~v~v~N~l-~~~tsiHwHGl~q~~~~~~D-Gv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~ 109 (539)
T TIGR03389 44 VIVNVTNNV-QYNVTIHWHGVRQLRNGWAD-GPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW 109 (539)
T ss_pred EEEEEEeCC-CCCeeEecCCCCCCCCCCCC-CCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh
Confidence 358899999 445556655532 11 22 32 147899999999995 35677777788754
No 26
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=37.80 E-value=14 Score=23.77 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=10.4
Q ss_pred CCceeehhhhhhhh
Q 043453 1 MKNLKEIMLLVTLL 14 (134)
Q Consensus 1 m~n~~~~~~~i~~l 14 (134)
|+|++|..||.++|
T Consensus 1 mnn~Si~VLlaLvL 14 (71)
T PF04202_consen 1 MNNLSIAVLLALVL 14 (71)
T ss_pred CCchhHHHHHHHHH
Confidence 88888877766655
No 27
>PF06369 Anemone_cytotox: Sea anemone cytotoxic protein; InterPro: IPR009104 Sea anemones are a rich source of lethal pore-forming peptides and proteins, known collectively as cytolysins or actinoporins. There are several different groups of cytolysins based on their structure and function []. This entry represents the most numerous group, the 20kDa highly basic peptides. These cytolysins form cation-selective pores in sphingomyelin-containing membranes. Examples include equinatoxins (from Actinia equina), sticholysins (from Stichodactyla helianthus), magnificalysins (from Heteractis magnifica), and tenebrosins (from Actinia tenebrosa), which exhibit pore-forming, haemolytic, cytotoxic, and heart stimulatory activities. Cytolysins adopt a stable soluble structure, which undergoes a conformational change when brought in contact with a membrane, leading to an active, membrane-bound form that inserts spontaneously into the membrane. They often oligomerise on the membrane surface, before puncturing the lipid bilayers, causing the cell to lyse. The 20kDa sea anemone cytolysins require a phosphocholine lipid headgroup for binding, however sphingomyelin is required for the toxin to promote membrane permeability []. The crystal structures of equinotoxin II [] and sticholysin II [] both revealed a compact beta-sandwich consisting of ten strands in two sheets flanked on each side by two short alpha-helices, which is a similar topology to osmotin. It is believed that the beta sandwich structure attaches to the membrane, while a three-turn alpha helix lying on the surface of the beta sheet may be involved in membrane pore formation, possibly by the penetration of the membrane by the helix.; GO: 0015267 channel activity, 0006812 cation transport, 0046931 pore complex assembly, 0052331 hemolysis in other organism involved in symbiotic interaction, 0046930 pore complex; PDB: 2KS4_A 1KD6_A 1IAZ_A 1TZQ_A 3LIM_F 1O71_B 2L2B_A 1GWY_B 1O72_A 2L38_A ....
Probab=37.15 E-value=93 Score=23.59 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=33.3
Q ss_pred CceEEEEEeCCCCCCeeEEEeceeCCCCCcce-ecCCCCeEEEEEecC
Q 043453 29 PKRVVMITNNTSEGRFDLTVHCKSKDDDVGEH-VPSPNQSYSFSFHDK 75 (134)
Q Consensus 29 ~k~~V~I~N~l~~~~~~L~vhC~Skd~DlG~~-~L~~g~~~~f~F~~~ 75 (134)
.|..|.|.|+-+..-..+.+.|.|.--|+... .+++...-.+.|+.+
T Consensus 29 RkiaIgi~N~s~~~~ta~~~Yf~SGt~d~~lp~~V~~~kal~~~~~K~ 76 (176)
T PF06369_consen 29 RKIAIGIDNESGHTWTALNVYFRSGTSDVPLPPTVPPQKALLYSFRKS 76 (176)
T ss_dssp SEEEEEEEEESSS-EEEEEEEEEESBSSS-S-SEE-TTEEEEEEEEST
T ss_pred cceEEEEEcCCCCeEeccceEEecccccCCCCCccCCcceEEEEEecC
Confidence 56789999998433356999999988766654 667777788888754
No 28
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=35.88 E-value=46 Score=21.99 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCCCeeEEEeceeC----CCC---C--cceecCCCCeEEEEEecCCCCceeEEEEe
Q 043453 30 KRVVMITNNTSEGRFDLTVHCKSK----DDD---V--GEHVPSPNQSYSFSFHDKLFGQTLFYCSF 86 (134)
Q Consensus 30 k~~V~I~N~l~~~~~~L~vhC~Sk----d~D---l--G~~~L~~g~~~~f~F~~~~~~~T~f~C~f 86 (134)
..+|+..|.- ..++.+.+-=.+. +.+ . ....+.+|+++++.|... |+-.|.|.-
T Consensus 24 G~tV~~~n~~-~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~--G~y~y~C~P 86 (99)
T PF00127_consen 24 GDTVTFVNND-SMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKP--GTYEYYCTP 86 (99)
T ss_dssp TEEEEEEEES-SSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESS--EEEEEEETT
T ss_pred CCEEEEEECC-CCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCC--eEEEEEcCC
Confidence 4568888853 2345555432221 000 0 223578999999999953 888899985
No 29
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=33.34 E-value=1.3e+02 Score=19.17 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=11.1
Q ss_pred CCCeeEEEeceeCCC
Q 043453 41 EGRFDLTVHCKSKDD 55 (134)
Q Consensus 41 ~~~~~L~vhC~Skd~ 55 (134)
..|..++++|.+...
T Consensus 14 ~~G~~VtL~C~~~~~ 28 (91)
T cd05751 14 PLGKPVTLRCQGPYG 28 (91)
T ss_pred CCCCcEEEEEecCCC
Confidence 346789999988533
No 30
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=29.90 E-value=1.1e+02 Score=20.46 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCCeeEEEeceeCCC------------CCcce-ecCCCCeEEEE
Q 043453 29 PKRVVMITNNTSEGRFDLTVHCKSKDD------------DVGEH-VPSPNQSYSFS 71 (134)
Q Consensus 29 ~k~~V~I~N~l~~~~~~L~vhC~Skd~------------DlG~~-~L~~g~~~~f~ 71 (134)
..++|+|.|.- ...-.|.-+-|--.| =.|.+ .|.||+.|++.
T Consensus 14 f~Y~I~I~N~~-~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 14 FAYRIRIENHS-DESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEEE-S-SS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEEECC-CCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 35778899877 323444444433222 23444 47999977764
No 31
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=29.49 E-value=1.1e+02 Score=27.23 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=41.5
Q ss_pred eEEEEEeCCCCCCeeEEEecee---CCCCC--c----ceecCCCCeEEEEEecCCCCceeEEEEeE
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS---KDDDV--G----EHVPSPNQSYSFSFHDKLFGQTLFYCSFK 87 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S---kd~Dl--G----~~~L~~g~~~~f~F~~~~~~~T~f~C~f~ 87 (134)
..|+++|.+ .-.+++..|=.. ...|- + ...|.||+.+++.|...--|+-.|.|+..
T Consensus 509 vri~l~N~t-~~~HpmHlHG~~f~v~~~~G~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l 573 (587)
T TIGR01480 509 LRVVLVNDT-MMAHPIHLHGMWSELEDGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHML 573 (587)
T ss_pred EEEEEECCC-CCCcceeEcCceeeeecCCCcccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCH
Confidence 458899998 446788888854 22221 1 24689999999999977678889999874
No 32
>PLN02991 oxidoreductase
Probab=28.12 E-value=1.3e+02 Score=26.53 Aligned_cols=58 Identities=14% Similarity=0.325 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCCCeeEEEecee----CCCC--Ccc-eecCCCCeEEEEEec-CCCCceeEEEEeEeC
Q 043453 31 RVVMITNNTSEGRFDLTVHCKS----KDDD--VGE-HVPSPNQSYSFSFHD-KLFGQTLFYCSFKWN 89 (134)
Q Consensus 31 ~~V~I~N~l~~~~~~L~vhC~S----kd~D--lG~-~~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~ 89 (134)
..|.|+|.| +.+..+.-|=-. ...| -|. --++||++|.++|.. .--|+--|..+..++
T Consensus 69 v~V~V~N~L-~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q 134 (543)
T PLN02991 69 LIINVFNHL-DEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFH 134 (543)
T ss_pred EEEEecCCC-CCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchh
Confidence 358899999 434444444322 1122 122 258999999999986 345665555665543
No 33
>PRK10101 csgB curlin minor subunit CsgB; Provisional
Probab=27.44 E-value=28 Score=25.68 Aligned_cols=17 Identities=41% Similarity=0.335 Sum_probs=13.5
Q ss_pred CCceeehhhhhhhhhee
Q 043453 1 MKNLKEIMLLVTLLAAT 17 (134)
Q Consensus 1 m~n~~~~~~~i~~l~~~ 17 (134)
|||.+++|+|.++.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (151)
T PRK10101 1 MKNKLLFMMLTILGAPG 17 (151)
T ss_pred CCceeHHHHHHHcCCch
Confidence 99999998888865543
No 34
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=26.82 E-value=1.7e+02 Score=20.85 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=24.4
Q ss_pred CceEEEEEeCCCCCCeeEEEeceeCCC------------CCcce-ecCCCCeEEEE
Q 043453 29 PKRVVMITNNTSEGRFDLTVHCKSKDD------------DVGEH-VPSPNQSYSFS 71 (134)
Q Consensus 29 ~k~~V~I~N~l~~~~~~L~vhC~Skd~------------DlG~~-~L~~g~~~~f~ 71 (134)
..++|+|.|.- ...-+|.-+=|--.| =.|.+ .|.||+.|++.
T Consensus 31 f~Y~ItI~N~~-~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 31 FAYTITIENLG-RVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEEECC-CCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 46789999976 333334333332222 23444 58999988775
No 35
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=23.04 E-value=41 Score=18.51 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=12.3
Q ss_pred CCceeehhhhhhhhhee
Q 043453 1 MKNLKEIMLLVTLLAAT 17 (134)
Q Consensus 1 m~n~~~~~~~i~~l~~~ 17 (134)
||.+++++++..+...+
T Consensus 1 MKkl~i~L~l~ga~f~~ 17 (33)
T PF10855_consen 1 MKKLAIILILGGAAFYG 17 (33)
T ss_pred CCceeehhhhhhHHHHH
Confidence 88888877777666554
No 36
>PF06650 DUF1162: Protein of unknown function (DUF1162); InterPro: IPR009543 Proteins in this entry may play a role in the control of protein cycling through the trans-Golgi network. Vacuolar sorting protein is an ATPase required for endosomal trafficking []. Defects in the human protein VPS13A cause chorea-acanthocytosis, an autosomal recessive neurodegenerative disorder characterised by the gradual onset of hyperkinetic movements and abnormal erythrocyte morphology [].; GO: 0008104 protein localization
Probab=22.77 E-value=1.7e+02 Score=22.52 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=26.4
Q ss_pred EEeCCCCCCeeEEEeceeCCCCCcceecCCCCeEEEEEec
Q 043453 35 ITNNTSEGRFDLTVHCKSKDDDVGEHVPSPNQSYSFSFHD 74 (134)
Q Consensus 35 I~N~l~~~~~~L~vhC~Skd~DlG~~~L~~g~~~~f~F~~ 74 (134)
|.|.+ +..|.+.=...++|-+...|+||+...|.+..
T Consensus 124 i~N~t---~~~i~i~q~~~~~~~~~~~l~pg~~~p~~~~~ 160 (277)
T PF06650_consen 124 IVNRT---GFPIRIRQCGSPDDDEWITLPPGESVPFHWPD 160 (277)
T ss_pred EEECC---CCCEEEEECcccCCCceEEecCCCCEEEEccc
Confidence 67998 35666665555455567899999998877654
No 37
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=22.28 E-value=25 Score=22.98 Aligned_cols=13 Identities=54% Similarity=0.764 Sum_probs=8.5
Q ss_pred CCceeehhhhhhh
Q 043453 1 MKNLKEIMLLVTL 13 (134)
Q Consensus 1 m~n~~~~~~~i~~ 13 (134)
|||+.++++++++
T Consensus 1 ~kn~~l~~~vv~l 13 (74)
T PF02553_consen 1 MKNLLLLLLVVAL 13 (74)
T ss_pred CceeHHHHHHHHH
Confidence 8888776665443
No 38
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=21.83 E-value=2.2e+02 Score=20.38 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=25.8
Q ss_pred CceEEEEEeCCCCCCeeEEEeceeCC------------CCCcce-ecCCCCeEEEE
Q 043453 29 PKRVVMITNNTSEGRFDLTVHCKSKD------------DDVGEH-VPSPNQSYSFS 71 (134)
Q Consensus 29 ~k~~V~I~N~l~~~~~~L~vhC~Skd------------~DlG~~-~L~~g~~~~f~ 71 (134)
..++|+|.|.-.. .-.|.-+=|-.. --.|.+ .|+||++|+++
T Consensus 30 faYtitI~N~g~~-~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~Yt 84 (126)
T COG2967 30 FAYTVTIRNLGEV-PVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYT 84 (126)
T ss_pred EEEEEEEecCCCc-cceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEc
Confidence 3578999998732 334444443322 234444 47999999985
No 39
>PF11284 DUF3085: Protein of unknown function (DUF3085); InterPro: IPR021436 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.73 E-value=75 Score=21.38 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=14.4
Q ss_pred EEEEecCeeEEecccC
Q 043453 107 YWSILESVACLRYDYE 122 (134)
Q Consensus 107 ~W~~~~dGiy~~~~~~ 122 (134)
.|.+++.|+|+..+..
T Consensus 3 l~LvkD~GVYlmsn~~ 18 (90)
T PF11284_consen 3 LWLVKDHGVYLMSNGG 18 (90)
T ss_pred EEEEeCCeEEEEeCCC
Confidence 5899999999998876
No 40
>PF11523 DUF3223: Protein of unknown function (DUF3223); InterPro: IPR021602 This family of proteins has no known function. ; PDB: 2K0M_A.
Probab=20.26 E-value=67 Score=20.72 Aligned_cols=12 Identities=8% Similarity=0.421 Sum_probs=10.0
Q ss_pred ceEEEEecCeeE
Q 043453 105 TCYWSILESVAC 116 (134)
Q Consensus 105 ~c~W~~~~dGiy 116 (134)
.|.|.+|.||--
T Consensus 56 rCF~vvR~DGs~ 67 (76)
T PF11523_consen 56 RCFFVVRTDGSE 67 (76)
T ss_dssp EEEEEEETTS-E
T ss_pred eEEEEEEeCCCe
Confidence 799999999964
Done!