Query 043456
Match_columns 447
No_of_seqs 198 out of 1707
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02678 seryl-tRNA synthetase 100.0 4E-124 8E-129 964.0 45.8 446 1-446 1-446 (448)
2 PLN02320 seryl-tRNA synthetase 100.0 7E-119 2E-123 928.2 42.2 422 1-433 66-500 (502)
3 COG0172 SerS Seryl-tRNA synthe 100.0 1E-117 3E-122 899.2 40.7 423 1-433 1-428 (429)
4 PRK05431 seryl-tRNA synthetase 100.0 3E-114 7E-119 893.5 43.0 422 1-433 1-425 (425)
5 KOG2509 Seryl-tRNA synthetase 100.0 6E-115 1E-119 862.3 32.3 444 1-447 2-455 (455)
6 TIGR00414 serS seryl-tRNA synt 100.0 5E-111 1E-115 868.0 42.5 414 1-424 1-418 (418)
7 cd00770 SerRS_core Seryl-tRNA 100.0 7.7E-79 1.7E-83 604.6 27.9 295 124-424 1-297 (297)
8 PRK00960 seryl-tRNA synthetase 100.0 8.8E-64 1.9E-68 521.0 25.2 292 113-427 169-507 (517)
9 cd00779 ProRS_core_prok Prolyl 100.0 4E-59 8.7E-64 454.1 22.2 249 143-407 6-255 (255)
10 cd00778 ProRS_core_arch_euk Pr 100.0 9.1E-57 2E-61 439.0 20.4 247 143-406 6-260 (261)
11 cd00772 ProRS_core Prolyl-tRNA 100.0 1.1E-55 2.3E-60 431.8 23.7 249 143-407 6-264 (264)
12 cd00771 ThrRS_core Threonyl-tR 100.0 2.2E-52 4.8E-57 415.5 19.1 263 142-422 1-298 (298)
13 PLN02837 threonine-tRNA ligase 100.0 1.3E-51 2.8E-56 445.1 24.9 297 120-434 183-526 (614)
14 PRK08661 prolyl-tRNA synthetas 100.0 9E-51 1.9E-55 427.1 23.2 274 140-433 15-296 (477)
15 PRK03991 threonyl-tRNA synthet 100.0 1.5E-50 3.3E-55 434.0 23.9 278 139-433 195-508 (613)
16 TIGR00415 serS_MJ seryl-tRNA s 100.0 3E-50 6.6E-55 413.9 23.0 282 125-427 179-507 (520)
17 TIGR00408 proS_fam_I prolyl-tR 100.0 1.1E-49 2.3E-54 418.2 20.8 271 143-432 12-290 (472)
18 KOG2324 Prolyl-tRNA synthetase 100.0 7.2E-49 1.6E-53 380.4 19.4 276 141-433 25-337 (457)
19 PRK12325 prolyl-tRNA synthetas 100.0 9.4E-48 2E-52 400.8 24.5 279 137-433 17-354 (439)
20 PRK09194 prolyl-tRNA synthetas 100.0 2.5E-47 5.5E-52 409.2 26.4 211 137-363 17-228 (565)
21 TIGR00409 proS_fam_II prolyl-t 100.0 2.5E-47 5.5E-52 407.2 25.9 208 137-360 17-225 (568)
22 PRK14799 thrS threonyl-tRNA sy 100.0 2.8E-47 6.2E-52 403.4 23.8 293 121-433 105-447 (545)
23 PLN02908 threonyl-tRNA synthet 100.0 3.2E-45 6.9E-50 400.2 24.8 290 122-433 260-598 (686)
24 COG0441 ThrS Threonyl-tRNA syn 100.0 5.9E-44 1.3E-48 376.9 18.8 297 121-433 157-496 (589)
25 PRK12444 threonyl-tRNA synthet 100.0 3.8E-43 8.2E-48 382.5 25.1 292 122-433 213-550 (639)
26 KOG1637 Threonyl-tRNA syntheta 100.0 4.6E-44 1E-48 356.7 10.2 278 137-437 159-472 (560)
27 TIGR00418 thrS threonyl-tRNA s 100.0 5.8E-42 1.3E-46 368.7 25.7 277 138-433 167-479 (563)
28 COG0442 ProS Prolyl-tRNA synth 100.0 2.1E-42 4.5E-47 359.1 14.1 277 135-432 15-293 (500)
29 PRK12305 thrS threonyl-tRNA sy 100.0 1E-41 2.3E-46 367.5 19.9 277 138-433 173-485 (575)
30 PRK04173 glycyl-tRNA synthetas 100.0 7.6E-38 1.6E-42 326.9 22.2 279 144-433 8-372 (456)
31 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 4.7E-38 1E-42 301.6 18.9 222 173-405 1-235 (235)
32 PF00587 tRNA-synt_2b: tRNA sy 100.0 1.3E-38 2.9E-43 292.4 13.7 169 176-350 1-173 (173)
33 PRK00413 thrS threonyl-tRNA sy 100.0 2.4E-35 5.1E-40 321.8 25.2 278 138-433 238-548 (638)
34 TIGR00389 glyS_dimeric glycyl- 99.9 5.9E-25 1.3E-29 231.6 20.0 280 144-433 7-466 (551)
35 KOG4163 Prolyl-tRNA synthetase 99.9 2.6E-26 5.6E-31 227.7 8.1 274 143-433 72-353 (551)
36 PRK14894 glycyl-tRNA synthetas 99.9 2.2E-24 4.7E-29 221.7 20.5 254 144-407 10-331 (539)
37 PLN02734 glycyl-tRNA synthetas 99.9 4.9E-24 1.1E-28 227.8 23.0 283 142-433 77-579 (684)
38 cd00774 GlyRS-like_core Glycyl 99.9 2.6E-25 5.7E-30 216.5 8.4 205 144-366 2-213 (254)
39 PF02403 Seryl_tRNA_N: Seryl-t 99.9 1.1E-22 2.4E-27 172.8 13.1 108 1-112 1-108 (108)
40 COG0423 GRS1 Glycyl-tRNA synth 99.9 1.6E-22 3.4E-27 207.1 15.3 283 143-433 9-466 (558)
41 cd00768 class_II_aaRS-like_cor 99.8 5.1E-20 1.1E-24 172.5 16.4 206 177-400 2-211 (211)
42 PRK07080 hypothetical protein; 99.7 9.6E-16 2.1E-20 150.0 19.4 258 140-422 18-312 (317)
43 cd00773 HisRS-like_core Class 99.6 1.6E-14 3.4E-19 141.3 14.1 146 174-332 2-148 (261)
44 CHL00201 syh histidine-tRNA sy 99.6 7.2E-14 1.6E-18 146.1 16.2 155 164-330 8-166 (430)
45 PRK00037 hisS histidyl-tRNA sy 99.5 8.6E-14 1.9E-18 144.7 14.4 150 162-326 6-158 (412)
46 TIGR00442 hisS histidyl-tRNA s 99.5 5.5E-13 1.2E-17 138.0 15.8 156 164-332 4-163 (397)
47 KOG2298 Glycyl-tRNA synthetase 99.3 1.9E-12 4.1E-17 131.1 8.7 131 164-298 36-248 (599)
48 PRK09537 pylS pyrolysyl-tRNA s 99.3 1.2E-11 2.6E-16 126.8 12.3 134 172-326 205-340 (417)
49 PLN02530 histidine-tRNA ligase 99.3 3.1E-11 6.7E-16 128.2 14.5 152 164-330 74-230 (487)
50 TIGR00443 hisZ_biosyn_reg ATP 99.3 4.1E-11 8.9E-16 120.4 14.1 143 169-325 3-147 (314)
51 PRK12420 histidyl-tRNA synthet 99.2 9.2E-11 2E-15 122.6 14.5 150 164-326 8-159 (423)
52 TIGR02367 PylS pyrrolysyl-tRNA 99.1 6.8E-10 1.5E-14 114.0 13.8 133 177-326 242-376 (453)
53 COG0124 HisS Histidyl-tRNA syn 99.1 1.5E-09 3.3E-14 112.3 14.0 158 164-333 8-169 (429)
54 PRK12292 hisZ ATP phosphoribos 98.9 1.9E-08 4.2E-13 104.1 14.1 149 164-325 7-158 (391)
55 PRK00488 pheS phenylalanyl-tRN 98.8 2.9E-06 6.2E-11 85.4 25.1 190 178-402 111-317 (339)
56 PRK12293 hisZ ATP phosphoribos 98.8 7.7E-08 1.7E-12 95.2 12.7 141 164-331 9-150 (281)
57 PLN02972 Histidyl-tRNA synthet 98.7 2.1E-07 4.6E-12 102.0 14.6 150 163-330 330-482 (763)
58 PF13393 tRNA-synt_His: Histid 98.7 3.2E-07 7E-12 91.8 14.2 146 165-325 1-149 (311)
59 PRK12421 ATP phosphoribosyltra 98.7 3.8E-07 8.3E-12 94.5 15.0 147 164-325 11-161 (392)
60 cd00669 Asp_Lys_Asn_RS_core As 98.7 3.7E-07 8E-12 89.8 13.5 113 175-310 2-116 (269)
61 PF01409 tRNA-synt_2d: tRNA sy 98.6 8.8E-07 1.9E-11 86.0 15.8 197 178-404 20-227 (247)
62 COG0016 PheS Phenylalanyl-tRNA 98.6 1.1E-06 2.5E-11 87.8 15.8 193 178-402 114-314 (335)
63 PTZ00326 phenylalanyl-tRNA syn 98.6 2.3E-06 5E-11 90.0 17.8 197 178-404 232-478 (494)
64 PRK12295 hisZ ATP phosphoribos 98.5 1.2E-06 2.5E-11 90.2 13.8 130 178-325 8-140 (373)
65 PRK04172 pheS phenylalanyl-tRN 98.3 1E-05 2.2E-10 86.2 15.7 199 171-405 229-469 (489)
66 PLN02853 Probable phenylalanyl 98.2 7E-05 1.5E-09 78.6 17.6 195 179-404 225-463 (492)
67 PRK09350 poxB regulator PoxA; 98.0 5.1E-06 1.1E-10 83.3 5.3 118 173-309 4-124 (306)
68 COG0173 AspS Aspartyl-tRNA syn 98.0 2.5E-05 5.4E-10 82.0 8.9 119 172-314 139-260 (585)
69 TIGR00468 pheS phenylalanyl-tR 97.9 0.00028 6.1E-09 70.4 15.5 159 179-361 76-241 (294)
70 PF00152 tRNA-synt_2: tRNA syn 97.8 0.00023 4.9E-09 72.3 12.7 116 173-311 21-142 (335)
71 TIGR00459 aspS_bact aspartyl-t 97.8 7.6E-05 1.6E-09 80.6 9.2 116 172-311 136-254 (583)
72 PRK12820 bifunctional aspartyl 97.7 0.00011 2.3E-09 80.8 9.6 117 172-310 154-271 (706)
73 KOG2411 Aspartyl-tRNA syntheta 97.7 6.8E-05 1.5E-09 77.4 7.2 122 172-317 176-301 (628)
74 PRK00476 aspS aspartyl-tRNA sy 97.7 0.00019 4.1E-09 78.0 9.9 114 172-310 139-256 (588)
75 cd00776 AsxRS_core Asx tRNA sy 97.7 0.00022 4.7E-09 72.1 9.6 117 172-310 22-138 (322)
76 PLN02903 aminoacyl-tRNA ligase 97.6 0.00033 7.1E-09 76.4 11.2 115 172-310 201-319 (652)
77 COG3705 HisZ ATP phosphoribosy 97.6 0.00022 4.8E-09 73.1 9.3 143 168-328 11-157 (390)
78 PRK00484 lysS lysyl-tRNA synth 97.6 0.0003 6.5E-09 75.0 10.6 115 172-310 170-287 (491)
79 TIGR00458 aspS_arch aspartyl-t 97.6 0.0003 6.5E-09 73.8 10.4 116 172-310 131-247 (428)
80 PRK05159 aspC aspartyl-tRNA sy 97.6 0.00034 7.3E-09 73.7 10.8 116 172-310 134-251 (437)
81 cd00775 LysRS_core Lys_tRNA sy 97.6 0.00049 1.1E-08 69.8 11.3 114 173-310 7-123 (329)
82 PRK03932 asnC asparaginyl-tRNA 97.6 0.00032 7E-09 74.0 10.3 116 171-310 130-255 (450)
83 cd00496 PheRS_alpha_core Pheny 97.6 0.0044 9.5E-08 59.1 16.9 124 178-320 4-132 (218)
84 PRK06462 asparagine synthetase 97.6 0.00028 6E-09 71.7 8.9 121 172-310 28-152 (335)
85 TIGR00470 sepS O-phosphoseryl- 97.5 0.00076 1.6E-08 70.2 11.4 144 229-402 182-329 (533)
86 TIGR00499 lysS_bact lysyl-tRNA 97.5 0.00013 2.8E-09 77.8 6.1 114 172-310 170-287 (496)
87 PTZ00417 lysine-tRNA ligase; P 97.5 0.00031 6.7E-09 76.0 8.9 117 172-310 251-368 (585)
88 PLN02850 aspartate-tRNA ligase 97.5 0.00039 8.4E-09 74.7 9.0 116 172-310 223-340 (530)
89 PLN02502 lysyl-tRNA synthetase 97.5 0.00023 4.9E-09 76.7 7.0 113 173-310 228-344 (553)
90 PRK12445 lysyl-tRNA synthetase 97.4 0.00025 5.5E-09 75.7 7.1 117 172-310 182-299 (505)
91 TIGR00457 asnS asparaginyl-tRN 97.4 0.00056 1.2E-08 72.3 9.2 115 172-310 134-258 (453)
92 PTZ00385 lysyl-tRNA synthetase 97.4 0.00058 1.3E-08 74.5 9.4 115 172-310 231-348 (659)
93 PTZ00425 asparagine-tRNA ligas 97.4 0.0009 2E-08 72.2 10.2 35 171-205 212-246 (586)
94 TIGR00462 genX lysyl-tRNA synt 97.3 0.00029 6.4E-09 70.6 5.8 127 175-326 2-133 (304)
95 PTZ00401 aspartyl-tRNA synthet 97.3 0.00056 1.2E-08 73.6 7.2 116 172-310 211-328 (550)
96 PLN02221 asparaginyl-tRNA synt 97.2 0.0021 4.5E-08 69.5 10.2 34 172-205 169-202 (572)
97 PRK02983 lysS lysyl-tRNA synth 97.1 0.00048 1.1E-08 79.8 5.5 115 172-310 768-885 (1094)
98 COG0442 ProS Prolyl-tRNA synth 97.1 0.0005 1.1E-08 72.9 5.0 74 354-433 342-415 (500)
99 cd00777 AspRS_core Asp tRNA sy 97.1 0.002 4.4E-08 63.8 8.8 115 175-310 2-116 (280)
100 KOG1936 Histidyl-tRNA syntheta 97.0 0.0025 5.5E-08 65.2 8.8 150 167-330 67-217 (518)
101 COG0017 AsnS Aspartyl/asparagi 97.0 0.0023 5.1E-08 66.3 8.3 115 172-310 132-247 (435)
102 PLN02532 asparagine-tRNA synth 96.9 0.0023 4.9E-08 69.7 7.9 34 172-205 233-266 (633)
103 PLN02603 asparaginyl-tRNA synt 96.8 0.0062 1.4E-07 65.8 10.0 114 172-309 224-368 (565)
104 PRK12294 hisZ ATP phosphoribos 96.7 0.016 3.4E-07 57.3 11.4 121 176-322 9-132 (272)
105 PLN02788 phenylalanine-tRNA sy 96.5 0.14 3E-06 53.2 17.2 184 184-404 77-278 (402)
106 COG2269 Truncated, possibly in 96.5 0.0039 8.4E-08 60.8 5.4 107 174-296 16-123 (322)
107 COG1190 LysU Lysyl-tRNA synthe 95.8 0.012 2.6E-07 61.7 5.0 118 174-319 180-297 (502)
108 PRK09616 pheT phenylalanyl-tRN 95.3 0.23 5E-06 54.0 13.0 132 177-325 361-495 (552)
109 KOG1885 Lysyl-tRNA synthetase 94.4 0.044 9.6E-07 56.8 4.4 127 175-331 226-358 (560)
110 TIGR00469 pheS_mito phenylalan 94.0 3.4 7.4E-05 43.6 17.3 107 174-294 45-165 (460)
111 KOG0554 Asparaginyl-tRNA synth 93.8 0.16 3.4E-06 52.0 6.7 121 169-311 127-259 (446)
112 cd00769 PheRS_beta_core Phenyl 93.7 0.85 1.8E-05 42.6 11.3 129 179-322 4-140 (198)
113 COG2024 Phenylalanyl-tRNA synt 93.5 0.19 4.1E-06 51.1 6.6 65 248-324 200-265 (536)
114 TIGR03752 conj_TIGR03752 integ 92.9 0.92 2E-05 47.7 10.9 77 40-119 80-156 (472)
115 PF07106 TBPIP: Tat binding pr 92.8 1 2.2E-05 41.1 10.0 66 32-98 71-136 (169)
116 PF12325 TMF_TATA_bd: TATA ele 92.1 1.1 2.3E-05 38.8 8.6 59 33-91 23-81 (120)
117 cd02426 Pol_gamma_b_Cterm C-te 91.5 0.11 2.3E-06 45.5 1.9 27 405-433 10-36 (128)
118 COG4026 Uncharacterized protei 91.4 2.3 5E-05 40.3 10.5 28 35-62 130-157 (290)
119 KOG0555 Asparaginyl-tRNA synth 91.3 0.4 8.7E-06 49.0 5.8 104 165-292 230-339 (545)
120 COG3883 Uncharacterized protei 91.1 2.4 5.2E-05 41.5 10.8 73 33-108 38-110 (265)
121 KOG0556 Aspartyl-tRNA syntheta 90.7 0.31 6.8E-06 50.0 4.4 95 175-290 229-323 (533)
122 TIGR00471 pheT_arch phenylalan 90.0 4 8.6E-05 44.5 12.6 131 177-325 364-497 (551)
123 PRK10884 SH3 domain-containing 87.6 4.9 0.00011 38.0 9.9 71 31-101 91-162 (206)
124 PF10146 zf-C4H2: Zinc finger- 87.2 8.9 0.00019 37.0 11.5 75 33-107 25-103 (230)
125 PF01920 Prefoldin_2: Prefoldi 85.7 18 0.0004 29.6 12.0 74 31-104 3-95 (106)
126 PF05278 PEARLI-4: Arabidopsis 85.6 8.9 0.00019 37.7 10.6 38 74-111 224-261 (269)
127 PF03962 Mnd1: Mnd1 family; I 85.3 7.4 0.00016 36.3 9.7 65 33-97 62-129 (188)
128 PF11932 DUF3450: Protein of u 85.0 6.3 0.00014 38.3 9.5 85 34-121 43-127 (251)
129 PF12329 TMF_DNA_bd: TATA elem 84.8 15 0.00034 28.8 9.8 67 32-101 4-70 (74)
130 PF06810 Phage_GP20: Phage min 84.3 9.7 0.00021 34.4 9.7 51 40-90 20-70 (155)
131 COG1579 Zn-ribbon protein, pos 84.2 6.2 0.00013 38.2 8.8 32 33-64 52-83 (239)
132 PRK06253 O-phosphoseryl-tRNA s 84.1 5.4 0.00012 42.7 9.1 117 229-360 183-302 (529)
133 PF13870 DUF4201: Domain of un 83.7 15 0.00034 33.5 11.1 40 77-116 104-143 (177)
134 PRK11637 AmiB activator; Provi 83.6 9.2 0.0002 40.2 10.7 32 74-105 99-130 (428)
135 KOG0804 Cytoplasmic Zn-finger 83.4 12 0.00027 39.0 11.0 36 75-110 418-453 (493)
136 PF12718 Tropomyosin_1: Tropom 83.3 13 0.00028 33.1 9.9 73 33-105 28-100 (143)
137 COG1579 Zn-ribbon protein, pos 82.9 11 0.00024 36.4 10.0 68 40-110 89-156 (239)
138 KOG2784 Phenylalanyl-tRNA synt 82.2 1.6 3.5E-05 44.4 4.0 95 254-369 332-428 (483)
139 PRK09343 prefoldin subunit bet 81.7 26 0.00057 30.2 11.0 87 32-118 13-118 (121)
140 COG1382 GimC Prefoldin, chaper 81.6 31 0.00067 29.7 11.1 85 33-117 13-116 (119)
141 KOG4196 bZIP transcription fac 81.5 36 0.00077 29.7 11.6 77 24-107 41-117 (135)
142 PF05266 DUF724: Protein of un 81.3 21 0.00046 33.3 11.0 28 78-105 159-186 (190)
143 PRK11637 AmiB activator; Provi 81.3 13 0.00029 39.0 10.9 22 76-97 108-129 (428)
144 PRK11546 zraP zinc resistance 79.8 44 0.00096 29.8 11.9 80 32-120 46-125 (143)
145 COG3883 Uncharacterized protei 78.8 21 0.00045 35.1 10.3 67 35-104 33-99 (265)
146 PF06005 DUF904: Protein of un 78.5 30 0.00065 27.1 9.4 64 35-108 6-69 (72)
147 PF03449 GreA_GreB_N: Transcri 77.6 20 0.00042 28.2 8.1 54 41-94 10-69 (74)
148 PF14282 FlxA: FlxA-like prote 77.3 20 0.00043 30.2 8.7 59 48-106 20-79 (106)
149 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.9 26 0.00056 30.5 9.6 73 30-102 56-129 (132)
150 COG0072 PheT Phenylalanyl-tRNA 76.4 14 0.0003 41.1 9.6 139 176-327 352-495 (650)
151 KOG2264 Exostosin EXT1L [Signa 76.4 57 0.0012 35.4 13.3 68 35-105 81-148 (907)
152 KOG0250 DNA repair protein RAD 76.1 32 0.0007 39.9 12.3 76 33-108 351-431 (1074)
153 TIGR02338 gimC_beta prefoldin, 75.2 49 0.0011 27.8 11.7 37 32-68 9-45 (110)
154 PF08581 Tup_N: Tup N-terminal 75.1 16 0.00035 29.1 7.1 59 50-108 7-69 (79)
155 PRK13182 racA polar chromosome 75.0 37 0.0008 31.3 10.4 23 77-99 124-146 (175)
156 PLN02265 probable phenylalanyl 74.9 21 0.00046 39.3 10.5 130 177-322 399-531 (597)
157 PRK05892 nucleoside diphosphat 74.6 21 0.00045 32.3 8.6 77 40-120 11-87 (158)
158 PF05529 Bap31: B-cell recepto 74.2 29 0.00062 32.2 9.8 71 32-104 117-187 (192)
159 PF11932 DUF3450: Protein of u 74.0 38 0.00083 32.8 11.0 28 41-68 36-63 (251)
160 PF03961 DUF342: Protein of un 73.9 15 0.00032 38.9 8.7 67 38-104 332-408 (451)
161 TIGR03185 DNA_S_dndD DNA sulfu 73.4 21 0.00045 39.7 10.0 76 30-105 206-289 (650)
162 PF07106 TBPIP: Tat binding pr 73.3 9.6 0.00021 34.6 6.2 66 44-109 34-110 (169)
163 COG1340 Uncharacterized archae 73.1 44 0.00094 33.4 11.0 74 32-105 19-96 (294)
164 COG1340 Uncharacterized archae 72.7 43 0.00094 33.4 10.9 36 31-66 4-39 (294)
165 PF07851 TMPIT: TMPIT-like pro 72.6 44 0.00096 34.0 11.1 34 32-65 10-43 (330)
166 PF10498 IFT57: Intra-flagella 71.6 36 0.00077 35.1 10.5 49 13-63 248-296 (359)
167 TIGR03752 conj_TIGR03752 integ 71.4 34 0.00074 36.3 10.4 81 33-113 59-144 (472)
168 cd00632 Prefoldin_beta Prefold 70.9 60 0.0013 27.0 11.8 77 32-108 5-100 (105)
169 PF12325 TMF_TATA_bd: TATA ele 70.7 42 0.0009 29.0 9.1 9 89-97 72-80 (120)
170 PF14662 CCDC155: Coiled-coil 70.3 38 0.00083 31.6 9.3 25 76-100 86-110 (193)
171 PHA03386 P10 fibrous body prot 70.2 26 0.00056 28.7 7.1 66 32-120 11-76 (94)
172 TIGR02231 conserved hypothetic 69.1 34 0.00075 36.9 10.3 33 33-65 71-103 (525)
173 PF04645 DUF603: Protein of un 69.0 34 0.00074 31.2 8.4 60 41-105 106-165 (181)
174 PF08317 Spc7: Spc7 kinetochor 68.9 43 0.00094 33.9 10.4 31 38-68 168-198 (325)
175 PF05531 NPV_P10: Nucleopolyhe 68.2 48 0.001 26.2 8.1 30 72-101 36-65 (75)
176 COG2433 Uncharacterized conser 67.4 46 0.001 36.3 10.4 70 36-105 439-508 (652)
177 PF13851 GAS: Growth-arrest sp 67.3 72 0.0016 30.0 10.9 28 38-65 53-80 (201)
178 KOG4603 TBP-1 interacting prot 67.3 42 0.00092 30.7 8.6 59 34-93 80-138 (201)
179 PF07851 TMPIT: TMPIT-like pro 66.9 61 0.0013 33.0 10.8 23 36-58 7-29 (330)
180 PF07889 DUF1664: Protein of u 65.7 71 0.0015 27.8 9.6 31 73-103 91-121 (126)
181 PHA02562 46 endonuclease subun 65.7 40 0.00087 36.4 10.1 25 33-57 299-323 (562)
182 PRK10884 SH3 domain-containing 65.0 59 0.0013 30.8 9.7 50 51-103 122-171 (206)
183 TIGR01461 greB transcription e 64.6 27 0.00058 31.5 7.1 78 41-120 9-88 (156)
184 PF07544 Med9: RNA polymerase 64.5 55 0.0012 26.2 8.2 58 43-100 24-81 (83)
185 PF13870 DUF4201: Domain of un 64.1 76 0.0017 28.9 10.2 69 33-101 98-175 (177)
186 PF04420 CHD5: CHD5-like prote 64.0 9.4 0.0002 34.6 4.1 62 37-105 37-100 (161)
187 PF10498 IFT57: Intra-flagella 63.8 32 0.0007 35.4 8.3 65 32-96 279-353 (359)
188 PHA00727 hypothetical protein 63.8 21 0.00045 33.3 6.2 57 35-91 6-70 (278)
189 PF10146 zf-C4H2: Zinc finger- 63.8 29 0.00064 33.4 7.6 35 74-108 49-83 (230)
190 PF12718 Tropomyosin_1: Tropom 62.5 83 0.0018 27.9 9.7 69 33-101 35-103 (143)
191 PRK03947 prefoldin subunit alp 62.4 67 0.0014 28.0 9.1 28 77-104 100-127 (140)
192 PF04111 APG6: Autophagy prote 62.4 57 0.0012 32.9 9.7 39 31-69 48-86 (314)
193 PF04156 IncA: IncA protein; 62.2 93 0.002 28.5 10.5 36 33-68 81-116 (191)
194 TIGR02894 DNA_bind_RsfA transc 61.6 88 0.0019 28.4 9.6 59 32-100 82-140 (161)
195 KOG0995 Centromere-associated 61.5 1.7E+02 0.0036 32.0 13.1 23 85-107 371-393 (581)
196 PF04111 APG6: Autophagy prote 61.5 1E+02 0.0023 31.0 11.4 69 32-103 63-131 (314)
197 PF05529 Bap31: B-cell recepto 61.3 32 0.0007 31.8 7.3 30 77-106 153-182 (192)
198 KOG4657 Uncharacterized conser 61.2 93 0.002 29.8 10.0 87 14-102 30-117 (246)
199 PHA02562 46 endonuclease subun 60.9 48 0.001 35.8 9.6 32 74-105 354-385 (562)
200 PF04380 BMFP: Membrane fusoge 60.8 44 0.00096 26.5 6.9 29 71-99 50-78 (79)
201 KOG0999 Microtubule-associated 60.7 48 0.001 35.7 8.9 87 30-116 104-194 (772)
202 COG0216 PrfA Protein chain rel 60.0 1.3E+02 0.0029 30.7 11.5 76 32-114 32-110 (363)
203 PF08614 ATG16: Autophagy prot 59.8 62 0.0013 30.1 8.9 68 33-100 102-173 (194)
204 PF10458 Val_tRNA-synt_C: Valy 59.6 75 0.0016 24.1 8.2 25 39-63 3-27 (66)
205 PRK01885 greB transcription el 59.4 46 0.00099 30.1 7.6 77 41-119 11-89 (157)
206 KOG2264 Exostosin EXT1L [Signa 59.4 44 0.00096 36.2 8.4 62 33-104 93-154 (907)
207 PF09789 DUF2353: Uncharacteri 59.4 92 0.002 31.5 10.4 73 31-103 70-158 (319)
208 KOG0972 Huntingtin interacting 59.2 48 0.001 33.0 8.0 71 33-103 273-367 (384)
209 COG5493 Uncharacterized conser 59.1 1.6E+02 0.0035 27.7 12.1 50 13-65 13-64 (231)
210 PF14257 DUF4349: Domain of un 58.8 35 0.00076 33.2 7.3 62 39-101 131-192 (262)
211 TIGR03545 conserved hypothetic 58.7 61 0.0013 35.4 9.7 42 72-113 220-261 (555)
212 COG4942 Membrane-bound metallo 58.3 90 0.002 32.8 10.4 20 75-94 91-110 (420)
213 PF14197 Cep57_CLD_2: Centroso 58.0 84 0.0018 24.3 7.8 19 47-65 26-44 (69)
214 PRK13729 conjugal transfer pil 58.0 57 0.0012 34.8 9.0 55 46-103 68-122 (475)
215 PF04728 LPP: Lipoprotein leuc 57.2 78 0.0017 23.6 7.9 27 79-105 25-51 (56)
216 PRK13979 DNA topoisomerase IV 57.0 70 0.0015 37.4 10.3 86 4-95 405-491 (957)
217 COG4942 Membrane-bound metallo 56.3 93 0.002 32.7 10.1 23 79-101 88-110 (420)
218 COG4026 Uncharacterized protei 56.1 1.9E+02 0.0042 27.7 11.7 72 35-106 144-219 (290)
219 PF03961 DUF342: Protein of un 56.0 52 0.0011 34.8 8.6 84 30-116 331-424 (451)
220 TIGR03185 DNA_S_dndD DNA sulfu 55.7 65 0.0014 35.8 9.7 23 42-64 393-415 (650)
221 PF06632 XRCC4: DNA double-str 55.6 74 0.0016 32.6 9.2 68 32-99 136-208 (342)
222 TIGR02449 conserved hypothetic 55.5 93 0.002 23.9 7.7 35 78-112 28-62 (65)
223 PF10186 Atg14: UV radiation r 55.2 87 0.0019 30.6 9.6 29 76-104 75-103 (302)
224 PF10211 Ax_dynein_light: Axon 54.8 88 0.0019 29.1 8.9 58 44-101 124-186 (189)
225 PF10018 Med4: Vitamin-D-recep 54.3 1.4E+02 0.003 27.7 10.2 61 31-105 3-63 (188)
226 PRK14938 Ser-tRNA(Thr) hydrola 54.3 12 0.00025 38.8 3.2 36 396-433 248-283 (387)
227 PRK09039 hypothetical protein; 54.0 83 0.0018 32.2 9.4 24 164-187 230-253 (343)
228 TIGR01061 parC_Gpos DNA topois 53.9 1.1E+02 0.0025 34.6 11.2 62 4-68 386-448 (738)
229 KOG2629 Peroxisomal membrane a 53.6 1.8E+02 0.004 28.9 11.1 83 33-119 122-205 (300)
230 PF12329 TMF_DNA_bd: TATA elem 53.2 1.1E+02 0.0024 24.0 9.4 63 38-103 3-65 (74)
231 PRK12704 phosphodiesterase; Pr 53.1 67 0.0014 34.8 8.9 40 77-116 116-155 (520)
232 PRK01156 chromosome segregatio 53.0 85 0.0018 36.2 10.4 30 76-105 414-443 (895)
233 PF08317 Spc7: Spc7 kinetochor 52.5 70 0.0015 32.3 8.5 22 82-103 234-255 (325)
234 PF10805 DUF2730: Protein of u 52.4 1.1E+02 0.0024 25.6 8.4 35 71-105 65-99 (106)
235 KOG0996 Structural maintenance 52.4 1.2E+02 0.0027 35.7 11.0 94 16-109 369-471 (1293)
236 PF10046 BLOC1_2: Biogenesis o 52.3 1.3E+02 0.0029 24.7 10.5 67 35-101 23-89 (99)
237 PF09726 Macoilin: Transmembra 52.1 79 0.0017 35.6 9.5 75 28-102 441-519 (697)
238 PF07888 CALCOCO1: Calcium bin 51.7 1.2E+02 0.0027 32.9 10.4 36 31-66 155-190 (546)
239 PRK03918 chromosome segregatio 51.6 76 0.0017 36.4 9.7 23 307-329 744-767 (880)
240 PRK02224 chromosome segregatio 51.6 77 0.0017 36.4 9.7 11 309-319 740-750 (880)
241 PF05667 DUF812: Protein of un 51.6 1.5E+02 0.0032 32.8 11.3 35 32-66 446-480 (594)
242 TIGR01462 greA transcription e 51.3 57 0.0012 29.1 6.9 78 41-120 6-85 (151)
243 PF14389 Lzipper-MIP1: Leucine 50.6 1E+02 0.0022 25.0 7.6 72 35-106 10-82 (88)
244 CHL00192 syfB phenylalanyl-tRN 50.5 97 0.0021 34.9 10.0 128 177-325 400-536 (704)
245 KOG3863 bZIP transcription fac 50.4 28 0.00061 38.0 5.4 35 32-66 510-544 (604)
246 KOG0994 Extracellular matrix g 50.2 85 0.0018 37.0 9.2 41 71-111 1225-1265(1758)
247 TIGR01063 gyrA DNA gyrase, A s 50.1 1.4E+02 0.0031 34.1 11.3 86 4-95 386-472 (800)
248 PRK05560 DNA gyrase subunit A; 49.9 1.4E+02 0.003 34.3 11.2 86 4-95 389-475 (805)
249 PF09304 Cortex-I_coil: Cortex 49.9 1.5E+02 0.0033 25.0 8.5 30 37-66 34-63 (107)
250 PF10168 Nup88: Nuclear pore c 49.1 1.3E+02 0.0028 34.1 10.6 36 73-108 588-623 (717)
251 PF03357 Snf7: Snf7; InterPro 49.1 1.9E+02 0.0041 25.6 10.2 38 34-71 2-39 (171)
252 TIGR03319 YmdA_YtgF conserved 48.7 85 0.0018 34.0 8.9 39 78-116 111-149 (514)
253 PF15188 CCDC-167: Coiled-coil 48.5 66 0.0014 26.1 6.0 30 71-100 36-65 (85)
254 KOG2391 Vacuolar sorting prote 48.3 1.7E+02 0.0037 29.8 10.1 72 42-116 220-291 (365)
255 PRK07857 hypothetical protein; 48.2 1.2E+02 0.0027 25.5 7.9 39 32-70 27-65 (106)
256 PF06810 Phage_GP20: Phage min 48.2 1.4E+02 0.003 26.9 8.9 48 45-95 18-68 (155)
257 PF06419 COG6: Conserved oligo 48.2 1.2E+02 0.0027 33.5 10.3 79 18-99 21-101 (618)
258 PF08657 DASH_Spc34: DASH comp 47.7 2.6E+02 0.0057 27.4 11.3 39 30-68 177-215 (259)
259 PF09325 Vps5: Vps5 C terminal 47.1 1.6E+02 0.0035 27.6 9.8 69 32-103 120-188 (236)
260 cd07627 BAR_Vps5p The Bin/Amph 47.0 2.5E+02 0.0055 26.4 11.0 70 32-104 100-169 (216)
261 PRK11020 hypothetical protein; 46.8 1.8E+02 0.004 24.8 9.1 64 47-115 5-72 (118)
262 smart00787 Spc7 Spc7 kinetocho 46.8 2.1E+02 0.0045 28.9 10.8 13 52-64 177-189 (312)
263 PF07889 DUF1664: Protein of u 46.7 2E+02 0.0043 25.1 9.9 23 78-100 89-111 (126)
264 PF10359 Fmp27_WPPW: RNA pol I 46.4 96 0.0021 33.2 8.8 66 41-107 164-229 (475)
265 PF08614 ATG16: Autophagy prot 46.3 2.2E+02 0.0048 26.4 10.3 27 35-61 97-123 (194)
266 PF10186 Atg14: UV radiation r 46.1 2.6E+02 0.0057 27.1 11.4 35 77-111 125-159 (302)
267 PF09730 BicD: Microtubule-ass 46.0 1.4E+02 0.003 33.7 10.1 86 29-114 30-119 (717)
268 PF09789 DUF2353: Uncharacteri 45.8 2.9E+02 0.0063 28.0 11.4 38 72-109 190-227 (319)
269 PF04977 DivIC: Septum formati 45.7 53 0.0012 25.3 5.2 32 35-66 19-50 (80)
270 PF00038 Filament: Intermediat 45.5 1.6E+02 0.0035 29.1 9.9 24 40-63 223-246 (312)
271 PTZ00464 SNF-7-like protein; P 45.2 2.6E+02 0.0057 26.5 10.6 36 30-65 15-50 (211)
272 PF02091 tRNA-synt_2e: Glycyl- 45.2 1E+02 0.0022 30.3 7.8 90 251-359 41-137 (284)
273 COG5185 HEC1 Protein involved 45.0 1.5E+02 0.0032 31.6 9.4 32 79-110 331-362 (622)
274 PF09726 Macoilin: Transmembra 44.9 2.4E+02 0.0051 31.9 11.8 38 77-114 628-665 (697)
275 PF04518 Effector_1: Effector 44.9 3.8E+02 0.0083 27.9 12.9 85 33-120 200-284 (379)
276 PF11559 ADIP: Afadin- and alp 44.6 2.2E+02 0.0048 25.1 10.1 33 32-64 58-90 (151)
277 PF10752 DUF2533: Protein of u 44.4 98 0.0021 24.8 6.2 40 31-70 17-64 (84)
278 KOG0288 WD40 repeat protein Ti 44.3 1.2E+02 0.0027 31.6 8.6 6 355-360 355-360 (459)
279 COG3167 PilO Tfp pilus assembl 44.3 95 0.0021 29.0 7.1 26 87-112 75-100 (211)
280 PF13851 GAS: Growth-arrest sp 44.2 2.2E+02 0.0048 26.7 9.9 26 79-104 101-126 (201)
281 PF06005 DUF904: Protein of un 43.8 1.6E+02 0.0034 23.1 10.3 19 44-62 22-40 (72)
282 KOG3366 Mitochondrial F1F0-ATP 43.8 1.9E+02 0.0042 26.5 8.9 30 80-109 107-143 (172)
283 PF10241 KxDL: Uncharacterized 43.8 1.7E+02 0.0037 23.6 9.4 72 28-102 9-81 (88)
284 PF12072 DUF3552: Domain of un 43.5 1.9E+02 0.0042 27.0 9.4 40 77-116 112-151 (201)
285 PF00957 Synaptobrevin: Synapt 43.4 1.4E+02 0.003 23.8 7.4 41 59-99 19-59 (89)
286 PRK03918 chromosome segregatio 43.2 1.3E+02 0.0029 34.4 10.0 13 87-99 261-273 (880)
287 TIGR01069 mutS2 MutS2 family p 43.2 2.3E+02 0.005 32.4 11.6 26 37-62 519-544 (771)
288 PRK14127 cell division protein 43.2 1.7E+02 0.0036 24.9 8.0 42 24-65 20-62 (109)
289 cd07596 BAR_SNX The Bin/Amphip 43.1 2.6E+02 0.0057 25.5 11.2 35 33-67 103-137 (218)
290 PF09738 DUF2051: Double stran 42.9 1.6E+02 0.0034 29.7 9.1 63 37-102 102-164 (302)
291 PF07334 IFP_35_N: Interferon- 42.9 53 0.0011 26.0 4.5 41 75-119 4-44 (76)
292 PF02388 FemAB: FemAB family; 42.8 1.6E+02 0.0034 30.8 9.6 25 76-100 271-295 (406)
293 PF12761 End3: Actin cytoskele 42.2 1.3E+02 0.0029 28.2 7.8 30 72-101 161-190 (195)
294 PF06156 DUF972: Protein of un 42.1 1.7E+02 0.0036 24.8 7.8 18 79-96 37-54 (107)
295 COG3352 FlaC Putative archaeal 41.6 84 0.0018 28.2 6.1 24 79-102 80-103 (157)
296 COG3074 Uncharacterized protei 41.2 1.7E+02 0.0037 22.8 8.1 54 45-108 23-76 (79)
297 PF04977 DivIC: Septum formati 40.9 97 0.0021 23.7 6.0 44 49-102 19-62 (80)
298 PRK05431 seryl-tRNA synthetase 40.9 1.5E+02 0.0033 31.2 9.1 31 80-110 68-98 (425)
299 TIGR01554 major_cap_HK97 phage 40.4 1.1E+02 0.0023 31.5 7.9 27 77-103 33-59 (378)
300 PRK12758 DNA topoisomerase IV 40.2 2.2E+02 0.0048 32.8 10.6 60 5-67 376-445 (869)
301 PF04799 Fzo_mitofusin: fzo-li 40.2 3E+02 0.0065 25.3 9.7 44 51-101 124-167 (171)
302 KOG0250 DNA repair protein RAD 40.1 1.8E+02 0.0039 34.1 9.9 35 35-69 297-331 (1074)
303 PRK00106 hypothetical protein; 39.5 2.2E+02 0.0048 31.0 10.2 39 78-116 132-170 (535)
304 PRK00409 recombination and DNA 39.3 2.7E+02 0.0058 31.9 11.4 27 36-62 523-549 (782)
305 PF05531 NPV_P10: Nucleopolyhe 39.3 1.7E+02 0.0037 23.1 6.8 28 78-105 35-62 (75)
306 cd00584 Prefoldin_alpha Prefol 39.1 2.4E+02 0.0051 24.1 8.7 72 37-108 3-117 (129)
307 TIGR02977 phageshock_pspA phag 38.7 3.5E+02 0.0075 25.6 11.8 36 35-70 47-82 (219)
308 PF10473 CENP-F_leu_zip: Leuci 38.6 2.8E+02 0.0062 24.6 11.2 65 33-100 59-123 (140)
309 PRK06342 transcription elongat 38.6 1.3E+02 0.0028 27.3 7.1 44 52-103 39-82 (160)
310 PF02403 Seryl_tRNA_N: Seryl-t 38.5 2.1E+02 0.0046 23.6 8.0 25 80-104 69-93 (108)
311 PF03148 Tektin: Tektin family 38.3 4.5E+02 0.0099 27.2 12.1 90 16-107 243-353 (384)
312 PRK09039 hypothetical protein; 38.3 3E+02 0.0066 28.1 10.6 7 316-322 300-306 (343)
313 PF14712 Snapin_Pallidin: Snap 38.3 2.1E+02 0.0045 22.9 10.5 71 33-103 14-89 (92)
314 PF10211 Ax_dynein_light: Axon 38.3 2.5E+02 0.0054 26.1 9.2 17 36-52 87-103 (189)
315 PF06008 Laminin_I: Laminin Do 38.2 2E+02 0.0042 28.0 9.0 67 33-102 45-111 (264)
316 TIGR01062 parC_Gneg DNA topois 38.2 2.1E+02 0.0045 32.6 10.0 59 4-68 386-445 (735)
317 TIGR01808 CM_M_hiGC-arch monof 37.7 1.8E+02 0.004 22.6 7.0 33 38-70 5-37 (74)
318 KOG2077 JNK/SAPK-associated pr 37.7 2.6E+02 0.0056 30.6 9.9 36 82-117 354-389 (832)
319 PRK13902 alaS alanyl-tRNA synt 37.3 54 0.0012 38.0 5.5 114 178-322 62-180 (900)
320 COG0216 PrfA Protein chain rel 37.1 2E+02 0.0044 29.3 8.7 38 90-130 81-118 (363)
321 PRK13694 hypothetical protein; 37.0 2.2E+02 0.0048 22.9 7.7 28 38-65 10-37 (83)
322 COG2433 Uncharacterized conser 37.0 2.5E+02 0.0055 30.9 9.9 75 33-107 422-503 (652)
323 PF07028 DUF1319: Protein of u 36.5 2.9E+02 0.0063 24.1 10.4 71 33-106 46-124 (126)
324 PF07200 Mod_r: Modifier of ru 36.5 1.7E+02 0.0037 25.7 7.5 68 34-104 21-88 (150)
325 KOG0979 Structural maintenance 36.4 2.2E+02 0.0048 33.1 9.8 50 74-123 321-370 (1072)
326 KOG0976 Rho/Rac1-interacting s 36.2 2E+02 0.0044 32.7 9.1 8 192-199 849-856 (1265)
327 KOG0804 Cytoplasmic Zn-finger 36.2 2.6E+02 0.0057 29.6 9.6 23 76-98 426-448 (493)
328 COG5185 HEC1 Protein involved 36.2 2.9E+02 0.0063 29.5 9.9 54 4-64 346-399 (622)
329 PF10482 CtIP_N: Tumour-suppre 36.1 2.8E+02 0.006 23.8 8.4 24 41-64 15-38 (120)
330 TIGR00414 serS seryl-tRNA synt 36.1 1.6E+02 0.0035 30.9 8.5 31 80-110 71-101 (418)
331 PF05278 PEARLI-4: Arabidopsis 36.1 1.8E+02 0.004 28.7 8.1 80 32-111 151-240 (269)
332 PF09340 NuA4: Histone acetylt 35.8 70 0.0015 25.5 4.4 29 75-103 6-34 (80)
333 PF03962 Mnd1: Mnd1 family; I 35.8 3.1E+02 0.0068 25.4 9.4 60 40-105 103-162 (188)
334 KOG3229 Vacuolar sorting prote 35.7 3.9E+02 0.0085 25.4 9.8 70 38-112 23-95 (227)
335 PRK00629 pheT phenylalanyl-tRN 35.7 74 0.0016 36.3 6.2 130 177-322 489-625 (791)
336 TIGR02449 conserved hypothetic 35.5 2E+02 0.0044 22.0 8.8 56 40-98 7-62 (65)
337 KOG0933 Structural maintenance 35.4 2E+02 0.0044 33.5 9.2 43 74-116 818-860 (1174)
338 PF05377 FlaC_arch: Flagella a 35.3 1.1E+02 0.0025 22.6 5.0 11 82-92 25-35 (55)
339 PF09766 FimP: Fms-interacting 35.3 2.7E+02 0.0059 28.5 9.8 54 48-104 95-148 (355)
340 KOG4005 Transcription factor X 35.2 3.6E+02 0.0079 26.1 9.6 8 18-25 71-78 (292)
341 TIGR02169 SMC_prok_A chromosom 35.2 2.6E+02 0.0055 33.0 10.9 25 301-325 1020-1045(1164)
342 PF10168 Nup88: Nuclear pore c 35.0 2.5E+02 0.0054 31.8 10.1 34 31-64 637-670 (717)
343 KOG3433 Protein involved in me 34.9 3.1E+02 0.0068 25.5 8.8 36 35-70 76-111 (203)
344 TIGR00634 recN DNA repair prot 34.9 4.1E+02 0.0088 29.0 11.6 43 48-90 323-365 (563)
345 PF10779 XhlA: Haemolysin XhlA 34.8 2.1E+02 0.0046 22.0 8.7 53 44-99 3-55 (71)
346 PF04508 Pox_A_type_inc: Viral 34.7 59 0.0013 19.7 2.8 18 79-96 2-19 (23)
347 COG4372 Uncharacterized protei 34.6 2.4E+02 0.0053 29.3 8.9 73 32-104 80-170 (499)
348 PLN02678 seryl-tRNA synthetase 34.3 2.1E+02 0.0046 30.5 8.9 30 80-109 73-102 (448)
349 KOG2910 Uncharacterized conser 34.3 4E+02 0.0086 25.0 11.6 33 87-120 151-185 (209)
350 TIGR01834 PHA_synth_III_E poly 34.2 2.4E+02 0.0052 28.6 8.8 28 72-99 290-317 (320)
351 PRK13169 DNA replication intia 34.1 2.5E+02 0.0055 23.8 7.7 18 48-65 9-26 (110)
352 PF13805 Pil1: Eisosome compon 34.1 4.8E+02 0.01 25.9 11.6 29 41-69 132-160 (271)
353 COG1196 Smc Chromosome segrega 34.0 1.9E+02 0.004 34.7 9.4 83 35-117 851-937 (1163)
354 PF04420 CHD5: CHD5-like prote 33.9 1.4E+02 0.0031 26.9 6.7 57 43-104 36-92 (161)
355 PRK01156 chromosome segregatio 33.9 2.7E+02 0.0059 32.1 10.6 25 42-66 638-662 (895)
356 TIGR01843 type_I_hlyD type I s 33.8 2.2E+02 0.0047 29.2 9.0 22 84-105 245-266 (423)
357 KOG2129 Uncharacterized conser 33.8 5.1E+02 0.011 27.3 11.0 100 4-108 164-283 (552)
358 TIGR02338 gimC_beta prefoldin, 33.7 2.8E+02 0.0061 23.1 8.7 27 76-102 72-98 (110)
359 PF11285 DUF3086: Protein of u 33.6 3.1E+02 0.0068 26.9 9.0 55 33-89 4-58 (283)
360 PTZ00419 valyl-tRNA synthetase 33.4 65 0.0014 37.8 5.4 33 33-65 922-954 (995)
361 cd00733 GlyRS_alpha_core Class 33.4 1.9E+02 0.0041 28.3 7.5 57 254-322 45-101 (279)
362 KOG4673 Transcription factor T 33.3 3.6E+02 0.0079 30.2 10.4 35 33-67 446-480 (961)
363 TIGR01010 BexC_CtrB_KpsE polys 33.2 4.4E+02 0.0095 26.8 11.0 70 45-116 175-244 (362)
364 PRK11281 hypothetical protein; 33.1 3.6E+02 0.0078 32.3 11.3 68 30-97 70-147 (1113)
365 PRK10636 putative ABC transpor 32.5 2.3E+02 0.005 31.4 9.4 63 43-105 559-632 (638)
366 PLN02943 aminoacyl-tRNA ligase 32.5 76 0.0016 37.1 5.7 68 33-104 882-950 (958)
367 PF01166 TSC22: TSC-22/dip/bun 32.4 1.1E+02 0.0024 22.9 4.5 40 77-116 13-52 (59)
368 PF09457 RBD-FIP: FIP domain ; 32.4 1.8E+02 0.0039 20.9 5.5 35 74-108 3-37 (48)
369 cd00858 GlyRS_anticodon GlyRS 32.1 28 0.0006 29.6 1.6 18 414-433 18-35 (121)
370 KOG0964 Structural maintenance 32.0 4.7E+02 0.01 30.6 11.3 90 16-105 688-812 (1200)
371 PRK01203 prefoldin subunit alp 31.9 3.5E+02 0.0077 23.7 11.5 39 30-68 4-42 (130)
372 TIGR01730 RND_mfp RND family e 31.9 1.3E+02 0.0028 29.5 6.7 24 84-107 108-131 (322)
373 COG1196 Smc Chromosome segrega 31.9 3E+02 0.0066 32.9 10.7 28 34-61 829-856 (1163)
374 TIGR00472 pheT_bact phenylalan 31.7 1.1E+02 0.0023 35.1 6.7 127 182-322 498-632 (798)
375 cd01202 FRS2 Fibroblast growth 31.5 46 0.001 27.8 2.7 47 140-186 46-94 (102)
376 KOG4196 bZIP transcription fac 31.5 1.8E+02 0.004 25.4 6.4 46 47-102 74-119 (135)
377 PF09755 DUF2046: Uncharacteri 31.5 3.1E+02 0.0067 27.7 9.0 61 44-104 139-204 (310)
378 PF05266 DUF724: Protein of un 31.3 4.4E+02 0.0095 24.6 9.6 20 84-103 158-177 (190)
379 PF07888 CALCOCO1: Calcium bin 31.2 4.7E+02 0.01 28.6 10.9 20 301-320 436-455 (546)
380 PRK04778 septation ring format 31.2 3.3E+02 0.0072 29.8 10.2 15 38-52 322-336 (569)
381 PF04880 NUDE_C: NUDE protein, 31.1 33 0.00072 31.4 2.0 27 74-101 27-53 (166)
382 PF10046 BLOC1_2: Biogenesis o 31.1 2.5E+02 0.0055 23.1 7.2 23 79-101 74-96 (99)
383 PF00038 Filament: Intermediat 30.9 3.8E+02 0.0082 26.5 9.9 19 83-101 260-278 (312)
384 KOG1029 Endocytic adaptor prot 30.9 2E+02 0.0043 32.7 8.0 35 76-110 435-469 (1118)
385 PF05082 Rop-like: Rop-like; 30.7 1.5E+02 0.0033 22.8 5.2 32 79-110 3-34 (66)
386 PF00435 Spectrin: Spectrin re 30.5 2.6E+02 0.0055 21.6 11.7 66 31-96 32-98 (105)
387 KOG1029 Endocytic adaptor prot 30.5 2.2E+02 0.0049 32.2 8.4 67 33-99 430-507 (1118)
388 TIGR01730 RND_mfp RND family e 30.3 3.1E+02 0.0067 26.7 9.1 32 73-104 104-135 (322)
389 PF08181 DegQ: DegQ (SacQ) fam 30.3 61 0.0013 22.3 2.6 13 90-102 9-21 (46)
390 PF13590 DUF4136: Domain of un 30.2 74 0.0016 27.6 4.1 43 160-202 13-63 (151)
391 PF04012 PspA_IM30: PspA/IM30 30.2 4.6E+02 0.01 24.5 11.0 36 35-70 46-81 (221)
392 KOG3091 Nuclear pore complex, 30.1 2E+02 0.0044 30.7 7.8 78 36-123 337-414 (508)
393 PRK09348 glyQ glycyl-tRNA synt 30.1 2.3E+02 0.005 27.9 7.5 86 254-358 49-141 (283)
394 PRK15422 septal ring assembly 30.0 2.9E+02 0.0062 22.1 9.5 54 45-108 23-76 (79)
395 PRK05561 DNA topoisomerase IV 30.0 3.7E+02 0.008 30.6 10.4 48 19-67 409-457 (742)
396 KOG4673 Transcription factor T 29.9 3E+02 0.0065 30.9 9.1 35 30-64 406-440 (961)
397 PF10805 DUF2730: Protein of u 29.9 3.3E+02 0.0072 22.7 8.8 22 76-97 77-98 (106)
398 PF15294 Leu_zip: Leucine zipp 29.9 3.9E+02 0.0085 26.5 9.3 29 75-103 194-226 (278)
399 KOG1103 Predicted coiled-coil 29.8 3.1E+02 0.0066 28.1 8.6 58 19-92 229-287 (561)
400 PF10073 DUF2312: Uncharacteri 29.6 2.8E+02 0.0061 21.9 7.7 35 40-74 4-42 (74)
401 PF09006 Surfac_D-trimer: Lung 29.4 1.9E+02 0.0041 20.7 5.1 30 82-111 3-34 (46)
402 PF09602 PhaP_Bmeg: Polyhydrox 29.2 4.5E+02 0.0097 24.0 9.8 60 45-106 46-106 (165)
403 PF15619 Lebercilin: Ciliary p 29.2 4.8E+02 0.01 24.4 10.5 25 32-56 11-35 (194)
404 COG3937 Uncharacterized conser 29.1 2.5E+02 0.0055 23.7 6.7 23 79-101 84-106 (108)
405 KOG4797 Transcriptional regula 29.1 1.3E+02 0.0029 25.4 5.0 25 76-100 65-89 (123)
406 PF00261 Tropomyosin: Tropomyo 29.1 3.1E+02 0.0068 26.2 8.6 32 33-64 92-123 (237)
407 KOG0964 Structural maintenance 29.0 3.1E+02 0.0068 32.0 9.3 20 300-319 1017-1036(1200)
408 PTZ00464 SNF-7-like protein; P 29.0 1.9E+02 0.0041 27.5 6.8 32 89-120 161-197 (211)
409 PF05700 BCAS2: Breast carcino 28.9 4.9E+02 0.011 24.6 9.8 31 34-64 144-174 (221)
410 cd04766 HTH_HspR Helix-Turn-He 28.9 1.9E+02 0.0042 23.1 6.1 30 25-54 57-86 (91)
411 PF03462 PCRF: PCRF domain; I 28.9 1.4E+02 0.003 25.3 5.4 46 289-336 51-96 (115)
412 TIGR00388 glyQ glycyl-tRNA syn 28.8 2.6E+02 0.0057 27.6 7.7 57 254-322 46-102 (293)
413 PRK00226 greA transcription el 28.8 2.2E+02 0.0048 25.4 7.0 31 40-70 10-41 (157)
414 COG3879 Uncharacterized protei 28.5 3.5E+02 0.0076 26.4 8.5 35 33-67 50-84 (247)
415 PF03233 Cauli_AT: Aphid trans 28.2 4E+02 0.0087 24.3 8.3 21 82-102 139-159 (163)
416 PRK10869 recombination and rep 28.1 5.8E+02 0.013 27.8 11.3 51 14-64 138-188 (553)
417 PF05377 FlaC_arch: Flagella a 28.0 1.9E+02 0.004 21.5 5.1 16 84-99 20-35 (55)
418 PF15070 GOLGA2L5: Putative go 28.0 4.3E+02 0.0092 29.4 10.2 21 82-102 199-219 (617)
419 PF00769 ERM: Ezrin/radixin/mo 28.0 5.6E+02 0.012 24.8 10.8 38 32-69 32-69 (246)
420 PF15233 SYCE1: Synaptonemal c 27.9 2.2E+02 0.0047 25.0 6.3 6 90-95 53-58 (134)
421 PRK15396 murein lipoprotein; P 27.9 3.1E+02 0.0068 21.8 8.1 22 84-105 52-73 (78)
422 PF08702 Fib_alpha: Fibrinogen 27.9 4.3E+02 0.0094 23.5 9.8 31 76-106 102-132 (146)
423 PF12128 DUF3584: Protein of u 27.9 5.8E+02 0.013 30.8 12.1 41 17-60 758-798 (1201)
424 PRK05729 valS valyl-tRNA synth 27.8 1.3E+02 0.0027 34.9 6.5 66 34-103 805-871 (874)
425 PF05008 V-SNARE: Vesicle tran 27.8 1.8E+02 0.0039 22.4 5.6 21 74-94 57-77 (79)
426 KOG0977 Nuclear envelope prote 27.8 4.3E+02 0.0094 28.8 9.9 11 287-297 362-372 (546)
427 KOG0971 Microtubule-associated 27.7 6.6E+02 0.014 29.3 11.4 10 397-406 846-855 (1243)
428 COG3352 FlaC Putative archaeal 27.5 4.3E+02 0.0093 23.8 8.2 19 49-67 74-92 (157)
429 PF14584 DUF4446: Protein of u 27.5 2.9E+02 0.0063 24.8 7.4 53 53-105 22-80 (151)
430 PRK00888 ftsB cell division pr 27.4 1.9E+02 0.0042 24.2 5.9 23 81-103 51-73 (105)
431 KOG2685 Cystoskeletal protein 27.3 7.2E+02 0.016 26.1 11.0 91 13-105 267-378 (421)
432 PF04513 Baculo_PEP_C: Baculov 27.1 4.5E+02 0.0097 23.4 9.6 35 32-66 22-57 (140)
433 PF15070 GOLGA2L5: Putative go 27.1 2.5E+02 0.0055 31.2 8.3 47 76-122 34-80 (617)
434 PRK05425 asparagine synthetase 27.0 34 0.00074 34.4 1.5 80 341-423 227-318 (327)
435 PF07989 Microtub_assoc: Micro 27.0 3.1E+02 0.0068 21.5 10.2 33 72-104 37-69 (75)
436 PRK06285 chorismate mutase; Pr 27.0 3.5E+02 0.0075 22.0 7.5 36 34-69 8-43 (96)
437 PHA03332 membrane glycoprotein 26.9 4.6E+02 0.01 30.9 10.2 38 193-238 1069-1106(1328)
438 COG1315 Uncharacterized conser 26.9 4.2E+02 0.0092 28.6 9.4 77 28-104 405-487 (543)
439 PRK06835 DNA replication prote 26.8 5E+02 0.011 26.3 9.9 24 84-107 64-87 (329)
440 TIGR03545 conserved hypothetic 26.8 4.2E+02 0.0091 29.1 9.9 36 73-108 214-249 (555)
441 PRK04863 mukB cell division pr 26.7 5.1E+02 0.011 32.1 11.3 73 35-110 1055-1127(1486)
442 TIGR00606 rad50 rad50. This fa 26.7 3.2E+02 0.007 33.2 9.8 32 34-65 830-861 (1311)
443 PRK00578 prfB peptide chain re 26.6 2.4E+02 0.0052 29.2 7.6 118 3-128 1-128 (367)
444 PF12614 RRF_GI: Ribosome recy 26.5 3.4E+02 0.0074 23.7 7.3 38 76-113 68-105 (128)
445 PF06156 DUF972: Protein of un 26.4 3.8E+02 0.0082 22.6 7.5 22 32-53 7-28 (107)
446 cd00890 Prefoldin Prefoldin is 26.3 3.9E+02 0.0084 22.4 9.1 30 76-105 92-121 (129)
447 COG0497 RecN ATPase involved i 26.2 7E+02 0.015 27.4 11.2 51 14-64 137-188 (557)
448 PF15219 TEX12: Testis-express 26.1 2.6E+02 0.0056 23.0 6.0 66 48-113 26-99 (100)
449 PHA03011 hypothetical protein; 26.0 3.9E+02 0.0085 22.3 7.4 58 30-90 61-118 (120)
450 KOG0993 Rab5 GTPase effector R 26.0 4.8E+02 0.01 27.4 9.4 33 72-104 149-181 (542)
451 COG1730 GIM5 Predicted prefold 26.0 4.8E+02 0.01 23.3 9.6 33 32-64 12-44 (145)
452 PF07798 DUF1640: Protein of u 26.0 5.1E+02 0.011 23.6 10.6 22 83-104 118-139 (177)
453 COG0782 Uncharacterized conser 25.9 1.5E+02 0.0032 26.6 5.2 77 41-119 5-82 (151)
454 PF09340 NuA4: Histone acetylt 25.9 1.2E+02 0.0025 24.3 4.1 40 78-120 2-41 (80)
455 COG4372 Uncharacterized protei 25.8 7.8E+02 0.017 25.7 11.1 35 32-66 150-184 (499)
456 PF13815 Dzip-like_N: Iguana/D 25.8 4.1E+02 0.0089 22.5 9.0 91 2-100 18-116 (118)
457 PHA02592 52 DNA topisomerase I 25.7 5.5E+02 0.012 27.3 10.2 18 74-91 405-422 (439)
458 KOG1899 LAR transmembrane tyro 25.6 5.7E+02 0.012 28.4 10.2 89 14-102 105-205 (861)
459 KOG4001 Axonemal dynein light 25.4 4.1E+02 0.0089 25.2 8.0 72 18-90 177-254 (259)
460 PF05546 She9_MDM33: She9 / Md 25.3 5.9E+02 0.013 24.1 11.3 74 33-106 46-134 (207)
461 cd00774 GlyRS-like_core Glycyl 25.1 63 0.0014 31.3 3.0 63 301-365 186-251 (254)
462 COG5570 Uncharacterized small 25.1 2.4E+02 0.0052 20.7 5.1 46 48-93 6-55 (57)
463 KOG4674 Uncharacterized conser 24.9 6.5E+02 0.014 31.7 11.6 23 77-99 1313-1335(1822)
464 KOG4674 Uncharacterized conser 24.9 3.9E+02 0.0085 33.5 9.8 81 29-109 1056-1137(1822)
465 PRK14720 transcript cleavage f 24.8 2.4E+02 0.0053 32.7 7.9 80 38-119 753-834 (906)
466 COG4467 Regulator of replicati 24.8 2.8E+02 0.0061 23.5 6.2 25 44-68 5-29 (114)
467 PF07334 IFP_35_N: Interferon- 24.8 2.7E+02 0.0059 22.1 5.8 8 110-117 42-49 (76)
468 PRK09343 prefoldin subunit bet 24.8 4.4E+02 0.0096 22.5 9.2 35 73-107 80-114 (121)
469 KOG1419 Voltage-gated K+ chann 24.7 9.6E+02 0.021 26.4 11.6 73 74-157 565-641 (654)
470 cd00890 Prefoldin Prefoldin is 24.6 4.2E+02 0.0091 22.2 11.5 25 80-104 89-113 (129)
471 PRK06800 fliH flagellar assemb 24.6 5.8E+02 0.013 23.8 9.9 39 35-73 40-78 (228)
472 PF15456 Uds1: Up-regulated Du 24.5 4.7E+02 0.01 22.7 11.2 29 32-60 21-49 (124)
473 PRK10929 putative mechanosensi 24.5 5.8E+02 0.013 30.5 10.9 72 30-101 55-132 (1109)
474 PF12999 PRKCSH-like: Glucosid 24.3 4.8E+02 0.01 24.1 8.3 15 83-97 158-172 (176)
475 PF12795 MscS_porin: Mechanose 24.1 6.3E+02 0.014 24.1 11.3 75 29-103 27-110 (240)
476 PF04129 Vps52: Vps52 / Sac2 f 24.1 6.1E+02 0.013 27.4 10.5 70 33-105 14-83 (508)
477 TIGR02132 phaR_Bmeg polyhydrox 23.9 5.9E+02 0.013 23.6 11.6 30 79-108 108-137 (189)
478 PF12128 DUF3584: Protein of u 23.6 5.7E+02 0.012 30.9 11.0 33 83-115 730-762 (1201)
479 PF04350 PilO: Pilus assembly 23.5 1E+02 0.0022 26.6 3.7 18 93-110 31-48 (144)
480 KOG1656 Protein involved in gl 23.5 4.2E+02 0.009 25.1 7.7 29 90-118 162-193 (221)
481 PF04568 IATP: Mitochondrial A 23.4 1.5E+02 0.0033 24.7 4.5 12 90-101 88-99 (100)
482 PRK13729 conjugal transfer pil 23.3 3.5E+02 0.0076 29.0 8.1 25 76-100 102-126 (475)
483 PF10828 DUF2570: Protein of u 23.2 4.5E+02 0.0097 22.0 9.2 69 44-115 22-90 (110)
484 PF11180 DUF2968: Protein of u 23.1 6E+02 0.013 23.8 8.7 40 77-117 153-192 (192)
485 cd00824 PTBI IRS-like phosphot 22.9 94 0.002 26.1 3.1 43 148-190 56-100 (104)
486 PF10234 Cluap1: Clusterin-ass 22.9 5.9E+02 0.013 25.2 9.1 87 1-104 116-202 (267)
487 PF09744 Jnk-SapK_ap_N: JNK_SA 22.9 5.7E+02 0.012 23.1 9.4 89 29-117 32-121 (158)
488 PF11853 DUF3373: Protein of u 22.9 98 0.0021 33.2 4.0 48 56-104 2-57 (489)
489 PF01920 Prefoldin_2: Prefoldi 22.8 4.1E+02 0.0088 21.4 8.1 72 37-108 2-92 (106)
490 TIGR02168 SMC_prok_B chromosom 22.8 6E+02 0.013 29.8 11.0 75 31-108 230-304 (1179)
491 TIGR03007 pepcterm_ChnLen poly 22.7 5.9E+02 0.013 27.0 10.1 73 35-107 312-384 (498)
492 TIGR01791 CM_archaeal chorisma 22.5 3.8E+02 0.0083 21.0 6.9 74 35-108 1-74 (83)
493 PF11336 DUF3138: Protein of u 22.4 2.4E+02 0.0053 29.7 6.5 63 40-102 25-107 (514)
494 PF08700 Vps51: Vps51/Vps67; 22.3 3.8E+02 0.0082 20.9 9.7 80 14-99 7-86 (87)
495 PF06785 UPF0242: Uncharacteri 22.1 5.8E+02 0.013 26.1 8.9 80 9-104 81-160 (401)
496 PRK07739 flgK flagellar hook-a 22.1 3.9E+02 0.0086 28.8 8.6 68 41-108 140-218 (507)
497 KOG4302 Microtubule-associated 22.1 5E+02 0.011 29.1 9.3 76 33-108 54-133 (660)
498 PF07200 Mod_r: Modifier of ru 22.0 3.6E+02 0.0078 23.6 7.0 84 25-108 2-85 (150)
499 PF14257 DUF4349: Domain of un 21.9 2.4E+02 0.0052 27.3 6.4 52 4-63 141-192 (262)
500 KOG2911 Uncharacterized conser 21.9 5.9E+02 0.013 26.9 9.2 73 34-111 234-306 (439)
No 1
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=3.6e-124 Score=963.98 Aligned_cols=446 Identities=81% Similarity=1.284 Sum_probs=422.7
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT 80 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~ 80 (447)
|||+++||.+||+|+|.|++++++|+.+.+.||+|+++|++||+++.++++|+++||++||+|+++++++++.+++++++
T Consensus 1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~ 80 (448)
T PLN02678 1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAET 80 (448)
T ss_pred CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 99999999888899999999999999766668999999999999999999999999999999999888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCCCCCCCCHHHHHHHcCCcccccccc
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGAD 160 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~~~~~~~H~~l~~~~~l~d~~~~~~ 160 (447)
++||++|+.++.++.++++++.++++.|||+|||+||+|.||++|++++.||.++...+++||++||+++|||||++|++
T Consensus 81 ~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g~~~~~~~~~dH~~Lg~~l~l~d~~~~~~ 160 (448)
T PLN02678 81 KELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWGEKRQEPKLKNHVDLVELLGIVDTERGAD 160 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEcCCCCCCCCCCHHHHHhhccCccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999876337899999999999999999999
Q ss_pred ccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhH
Q 043456 161 IAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240 (447)
Q Consensus 161 ~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l 240 (447)
++|+++|||.|.||+|++||++|+++.+.+.||++|.+|+|++.++|++||||++|+++||++++.++++||+||||+++
T Consensus 161 vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l 240 (448)
T PLN02678 161 VAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPL 240 (448)
T ss_pred hcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999976556899999999999
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
|++|++++++|++||+||+++|+|||+|+|++|++++||+|||||+|||||+||.|++.+|+++|++|++.+++||+.||
T Consensus 241 ~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~ 320 (448)
T PLN02678 241 CAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLG 320 (448)
T ss_pred ChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999765699999999999999999999
Q ss_pred CcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHH
Q 043456 321 IPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERT 400 (447)
Q Consensus 321 l~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rl 400 (447)
||||+|.+||||||++++++||||||||+++.|+||+|||||+||||||++|||++.++.++++.||||+|||||||+|+
T Consensus 321 lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~lA~~R~ 400 (448)
T PLN02678 321 IPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERT 400 (448)
T ss_pred CCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeEEecCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996532245789999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCcccCcCCCceeecCCCCCCccccccccC
Q 043456 401 ICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAKPAPEAKGKKSK 446 (447)
Q Consensus 401 l~allE~~q~~~gi~iP~~L~py~~g~~~i~~~~~~~~~~~~~~~~ 446 (447)
|+|||||||++|||.||++|+|||||.++|+|+.||...-||+|.+
T Consensus 401 l~AiLEn~Q~~dgi~iP~vL~pym~g~~~i~~~~~~~~~~~~~~~~ 446 (448)
T PLN02678 401 LCCILENYQTEDGVRVPEVLQPFMGGIEFLPFKKKPPAKGKGKKKK 446 (448)
T ss_pred HHHHHHhCcCCCCeECChhhhhhcCCCceecCCCCccccccccccc
Confidence 9999999999999999999999999999999875554455666543
No 2
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=7.2e-119 Score=928.22 Aligned_cols=422 Identities=35% Similarity=0.618 Sum_probs=402.7
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT 80 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~ 80 (447)
|||+++|| +|+|.|++++++|+.+.+ ||+|+++|++||+++.++++|+++||++||+|++ ++.+++.+++++++
T Consensus 66 mlD~k~ir----~n~~~v~~~l~~R~~~~~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~ 139 (502)
T PLN02320 66 AIDFKWIR----DNKEAVAINIRNRNSNAN-LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEG 139 (502)
T ss_pred ccCHHHHH----hCHHHHHHHHHhcCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHH
Confidence 99999999 999999999999998666 9999999999999999999999999999999988 55567788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCccccccc
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGA 159 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~ 159 (447)
++||++|++||+++.++++++.++++.|||+|||+||+|.||+ ++++++||+++. +++++||++||+++|||||++|+
T Consensus 140 k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~de~-~~~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aa 218 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGEDS-SAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAA 218 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCC-CeEEEecCCCCCCCCCCcCHHHHHHHcCCccccchh
Confidence 9999999999999999999999999999999999999999874 488899999887 78899999999999999999999
Q ss_pred cccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcC-ccEEEecCCCccccccCCCh
Q 043456 160 DIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDE-ELYKVTGEGDDKYLIATAEQ 238 (447)
Q Consensus 160 ~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~-~lf~i~~~~~~~~L~pTsE~ 238 (447)
+++|++|||+.+.|++|++||++|+++.+.+.||++|++|+|++.++|++|||+++|++ ++|.+++ +++||+||||+
T Consensus 219 kvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~--ed~~Li~TaE~ 296 (502)
T PLN02320 219 EVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDG--SDQCLIGTAEI 296 (502)
T ss_pred hcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECC--CceEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999988 8999864 58999999999
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM 318 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~ 318 (447)
|++++|++++++|++||+||+++|+|||.|+||+|++++||+|||||+|+|+|+||+|+| |+++|++|++.++++|+.
T Consensus 297 Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peq--s~~e~e~ll~~~e~i~~~ 374 (502)
T PLN02320 297 PVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEE--SESFHEELIQIEEDLFTS 374 (502)
T ss_pred cccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccC-------CCC---CceeEEE
Q 043456 319 LKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKK-------SNE---QTKQYVH 388 (447)
Q Consensus 319 Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~-------~~~---~~~~~~h 388 (447)
||||||+|.+||+|||++++++||||||||++++|+||+|||||+||||||++|||++.+ +++ ++..|||
T Consensus 375 LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SNc~DfQaRRl~iryr~~~~~~~~~~~~k~~~~~~~~vH 454 (502)
T PLN02320 375 LGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVH 454 (502)
T ss_pred cCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecchhhHhhhcccceeccccccccccccccccCCCcceeE
Confidence 999999999999999999999999999999999999999999999999999999999631 111 2478999
Q ss_pred eecccccchhHHHHHHHHhcCCCCC-cccCCcccCcCCCceeecCC
Q 043456 389 LLNSTLTATERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 389 tlngt~~ai~Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~~ 433 (447)
|+|||||||+|+|+|||||||++|| |.||++|+|||||.++|+++
T Consensus 455 TLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym~g~~~I~~~ 500 (502)
T PLN02320 455 TLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFMGGLELIKPK 500 (502)
T ss_pred ecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhcCCCcccCCC
Confidence 9999999999999999999999999 99999999999999999865
No 3
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-117 Score=899.18 Aligned_cols=423 Identities=44% Similarity=0.751 Sum_probs=408.7
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK-DFSEMVTK 79 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~-~~~~l~~~ 79 (447)
|||+++|| +|+|.|++++.+|+.+...+|++++||.+||+++.+.++|+++||++||+|++.++.++ +...++++
T Consensus 1 mld~k~ir----~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e 76 (429)
T COG0172 1 MLDLKLIR----ENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAE 76 (429)
T ss_pred CchHHHhh----hCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999 99999999999998766679999999999999999999999999999999997777665 47789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCC---CCCCCCCHHHHHHHcCCcccc
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKR---TEPKLKNHVELVELLGIADLK 156 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~---~~~~~~~H~~l~~~~~l~d~~ 156 (447)
++.++++++.++.++.+++.+++..++.|||++|++||+|.||++|+++++||+++ .++.+++|++||+.+|++||+
T Consensus 77 ~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~ 156 (429)
T COG0172 77 VKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFE 156 (429)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecCccccccCCcchHHHHhhhcCcchhh
Confidence 99999999999999999999999999999999999999999999999999999986 278899999999999999999
Q ss_pred ccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCC
Q 043456 157 KGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATA 236 (447)
Q Consensus 157 ~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTs 236 (447)
+++|+||+|||||+|.||+|++||++|++|.+.++||+++.+|.|++.+++.++|+||+|+++||++++. +|||+|||
T Consensus 157 ~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~--~~~LipTa 234 (429)
T COG0172 157 RAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP--DLYLIPTA 234 (429)
T ss_pred hhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCC--CEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 89999999
Q ss_pred ChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHH
Q 043456 237 EQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFY 316 (447)
Q Consensus 237 E~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~ 316 (447)
|+|+++||++++++..+||++|+++|+|||.|+||+|+|++||+|+|||.|||+|.||+|++ |++++++|++.+++++
T Consensus 235 Evpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~--S~~~~E~m~~~ae~il 312 (429)
T COG0172 235 EVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEE--SEEELEEMLGNAEEVL 312 (429)
T ss_pred hhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcch--hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccc
Q 043456 317 QMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTA 396 (447)
Q Consensus 317 ~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~a 396 (447)
+.|+||||++.+||||||++|+++||+|||+|+++.|+|++|||||+||||||++|||+.. ..+++.|+||+||||+|
T Consensus 313 ~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~~Ryr~~--~~~k~~~vhTLNGsglA 390 (429)
T COG0172 313 QELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDK--EEGKREFVHTLNGSGLA 390 (429)
T ss_pred HHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccHHHHHHhcccccc--cCCCcEEEEeccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999875 25677999999999999
Q ss_pred hhHHHHHHHHhcCCCCC-cccCCcccCcCCCceeecCC
Q 043456 397 TERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 397 i~Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~~ 433 (447)
++|+++|||||||++|| |.||++|+|||||..+|++.
T Consensus 391 ~~R~l~AilENyq~~dG~v~IPevL~~y~gg~~~i~~~ 428 (429)
T COG0172 391 VGRTLVAILENYQQEDGSVKIPEVLRPYMGGLEIIPKP 428 (429)
T ss_pred HHHHHHHHHHcccCCCCCeeccHHHHhhCCcceecCCC
Confidence 99999999999999999 99999999999999999865
No 4
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-114 Score=893.55 Aligned_cols=422 Identities=46% Similarity=0.763 Sum_probs=407.7
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT 80 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~ 80 (447)
|||+++|| +|||.|++++++|+.+.+ ||+|+++|++||+++.++++||++||++||+|+++++.+++.+++++++
T Consensus 1 MlD~k~ir----~n~~~v~~~l~~R~~~~~-vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~ 75 (425)
T PRK05431 1 MLDIKLIR----ENPEAVKEALAKRGFPLD-VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEV 75 (425)
T ss_pred CCCHHHHH----hCHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Confidence 99999999 999999999999987544 9999999999999999999999999999999999877777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCccccccc
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGA 159 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~ 159 (447)
++||++++++++++.++++++.+.++.|||++||+||+|.+|++|+++++||+++. +++++||++||+++||+||++++
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~ 155 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAA 155 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCCCCCCCCCCCCHHHHHhhcCceeccccc
Confidence 99999999999999999999999999999999999999999999999999999887 78899999999999999999999
Q ss_pred cccCccceeeccHHHHHHHHHHHHHHHHHH-HCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCCh
Q 043456 160 DIAGGRGFYLKGDGVRLNQALINFGLDFLE-KKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQ 238 (447)
Q Consensus 160 ~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~-~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~ 238 (447)
+++|+|+|+|+|.|++|++||++|+++.+. +.||++|.+|.|++.++|++||||++|+++||+|++ +++||+||+|+
T Consensus 156 ~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~--~~~~L~pTsE~ 233 (425)
T PRK05431 156 KVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED--DDLYLIPTAEV 233 (425)
T ss_pred ccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC--CCEEEEeCCcH
Confidence 999999999999999999999999999998 999999999999999999999999999999999975 58999999999
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM 318 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~ 318 (447)
+++++|+++++||++||++++++|+|||+|+|++|++++||+|+|||+|+|+|+||+|++ |+++|++|++++++||+.
T Consensus 234 ~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~--s~~~~~~~l~~~~~i~~~ 311 (425)
T PRK05431 234 PLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPED--SYAELEELTANAEEILQK 311 (425)
T ss_pred HHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred cCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchh
Q 043456 319 LKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATE 398 (447)
Q Consensus 319 Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~ 398 (447)
||||||+|.+|++|+|++++++||+|+|+|+++.|+|++|||||+||||+|++|+|+++. +++..|+|||||||+|++
T Consensus 312 Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~--~~~~~~~htln~t~~a~~ 389 (425)
T PRK05431 312 LELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEG--DGKPELVHTLNGSGLAVG 389 (425)
T ss_pred cCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCC--CCceeEEEEeCCchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999752 457789999999999999
Q ss_pred HHHHHHHHhcCCCCC-cccCCcccCcCCCceeecCC
Q 043456 399 RTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 399 Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~~ 433 (447)
|+|+|||||||+++| |+||++|+|||||..+||++
T Consensus 390 R~l~ailE~~q~~~g~i~iP~~l~py~~~~~~i~~~ 425 (425)
T PRK05431 390 RTLVAILENYQQADGSVTIPEVLRPYMGGLEVIPPK 425 (425)
T ss_pred HHHHHHHHHCCCCCCcEECChhhhcccCCCCccCCC
Confidence 999999999999999 99999999999988999763
No 5
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-115 Score=862.33 Aligned_cols=444 Identities=56% Similarity=0.932 Sum_probs=416.8
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCChhHH---
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQ-LKLSGKDFSEM--- 76 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~-~k~~~~~~~~l--- 76 (447)
|||++++|++||.||+.++++.++|+.+...|++++++|.+|+....++++|+.+.|.++|+|+. ..+.+++...+
T Consensus 2 ~L~~~lf~~~~g~~p~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~k~i~~~k~kkke~~~~l~~~ 81 (455)
T KOG2509|consen 2 MLDIRLFRTRKGGNPELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLNKEIGDLKLKKKEDIGQLEES 81 (455)
T ss_pred ccccccccccCCCChHHHHHHHHHhhcCHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhhHhhHHHHhhcchhhHHHHh
Confidence 89999999999999999999999999888889999999999999999999999999999999993 33334333222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCCCCCCCCHHHHHHHc
Q 043456 77 ------VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELL 150 (447)
Q Consensus 77 ------~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~~~~~~~H~~l~~~~ 150 (447)
.++.+.|+++..+++++..++++++++.+.+|||++||+||+|+||.+|++.+.|++....++...|.+|+..+
T Consensus 82 ~~~~~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~~~ipN~~hpsVpv~~ee~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 161 (455)
T KOG2509|consen 82 KAKNTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQANVVQRVGGPLEFEFKLSHHDELVRAL 161 (455)
T ss_pred hhHhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCchhhhhHHHHhcCCcccccccccHHHHHHhc
Confidence 24567789999999999999999999999999999999999999999888888888766566678899999999
Q ss_pred CCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCcc
Q 043456 151 GIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDK 230 (447)
Q Consensus 151 ~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~ 230 (447)
|++|+++++++||+++|||+|.||+|++||++|+++.+.++||+++++|+|++++++++||+++.|++++|.+-+.+++.
T Consensus 162 ~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~ 241 (455)
T KOG2509|consen 162 GFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEK 241 (455)
T ss_pred ccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766789
Q ss_pred ccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 231 YLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 231 ~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
||++|||+|++++|+++++...+||+||+++|+|||.|+|++|+|++||||||||+|+|||++|.|++ |+++|++|++
T Consensus 242 ~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~--S~~~~eEmi~ 319 (455)
T KOG2509|consen 242 YLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPED--SWEMLEEMIN 319 (455)
T ss_pred eeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcch--hHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEee
Q 043456 311 NSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLL 390 (447)
Q Consensus 311 ~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htl 390 (447)
.++++|+.||||||+|.|+|+++|.+|+++||||+|||+++.|+|++|||||+|||||||+|||+..+.++++..||||+
T Consensus 320 ~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yvHtL 399 (455)
T KOG2509|consen 320 NQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYVHTL 399 (455)
T ss_pred HHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999765557778999999
Q ss_pred cccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCCCCCCccccccccCC
Q 043456 391 NSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAKPAPEAKGKKSKA 447 (447)
Q Consensus 391 ngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~~~~~~~~~~~~~~~ 447 (447)
|||+||++|+|+|||||||++|||.||++|+|||+|.+.||+. |+.|....+|.+|
T Consensus 400 N~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym~~~~~ip~~-k~~p~~~~k~~k~ 455 (455)
T KOG2509|consen 400 NGTACATPRALCAILENYQTEDGIEVPEVLRPYMGGQEFIPFV-KPAPKNLTKKQKA 455 (455)
T ss_pred chhhHhhhHHHHHhHhhccCCCCccCCHhHHhhcCCccccccc-ccCCcccccccCC
Confidence 9999999999999999999999999999999999998999999 9999988866554
No 6
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=5.4e-111 Score=868.03 Aligned_cols=414 Identities=43% Similarity=0.719 Sum_probs=399.8
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hhHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVD-LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD-FSEMVT 78 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~-~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~-~~~l~~ 78 (447)
|||+++|| +|||.|++++++|+.+.+ .||+|+++|++||+++.++++|+++||++||+|+++++.+++ .+++++
T Consensus 1 MlDik~ir----~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~ 76 (418)
T TIGR00414 1 MLDRKLLR----NNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKK 76 (418)
T ss_pred CCCHHHHH----hCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 99999999 999999999999997544 589999999999999999999999999999999998777776 789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCccccc
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKK 157 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~ 157 (447)
+++++|++|+++++++.++++++.+.++.|||++||+||+|.||++|+++++||+++. +++++||++||+++|++||++
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~~~~~n~~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~~ 156 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDR 156 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcccCeEeeecCCCCCCCCCCCCHHHHHHhCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999876 788999999999999999999
Q ss_pred cccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCC
Q 043456 158 GADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAE 237 (447)
Q Consensus 158 ~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE 237 (447)
+++++|+|||+|+|.|++|++||++|+++.+.+.||++|.+|.|++.++|++||||++|+++||.|++ +++||+||||
T Consensus 157 ~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~--~~~~L~pTsE 234 (418)
T TIGR00414 157 AVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED--TDLYLIPTAE 234 (418)
T ss_pred cccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC--CCEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 4799999999
Q ss_pred hhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHH
Q 043456 238 QPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQ 317 (447)
Q Consensus 238 ~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~ 317 (447)
++++++|+++++||++||++++++|+|||+|+|++|++++||+|+|||+|+|+|+||+|++ |+++|+++++.+++||+
T Consensus 235 ~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~--s~~~~~~~~~~~~~i~~ 312 (418)
T TIGR00414 235 VPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEE--SAEELEEMTSDAEQILQ 312 (418)
T ss_pred HHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred HcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccch
Q 043456 318 MLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTAT 397 (447)
Q Consensus 318 ~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai 397 (447)
.|||||++|.+|++|+|++++++||+|+|+|+++.|+||+|||||+||||+|++|+|.+.+ ++++.++||+||||+||
T Consensus 313 ~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~--~~~~~~vh~ln~~~~ai 390 (418)
T TIGR00414 313 ELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKN--KGKNKYVHTLNGTALAI 390 (418)
T ss_pred HcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCC--CCceEEEEeecCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999753 35678999999999999
Q ss_pred hHHHHHHHHhcCCCCC-cccCCcccCcC
Q 043456 398 ERTICCILENYQKEDG-VEVPEVLQPFM 424 (447)
Q Consensus 398 ~Rll~allE~~q~~~g-i~iP~~L~py~ 424 (447)
+|+|+|||||||+++| |.||++|+|||
T Consensus 391 ~R~i~Aile~~~~~~G~i~iP~~l~py~ 418 (418)
T TIGR00414 391 GRTIVAILENYQTEDGSVEIPEVLRKYL 418 (418)
T ss_pred HHHHHHHHHHccCCCCCEeCChhccccC
Confidence 9999999999999999 78999999997
No 7
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=7.7e-79 Score=604.55 Aligned_cols=295 Identities=60% Similarity=0.997 Sum_probs=284.4
Q ss_pred CceEEEeecCCCC-CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccC
Q 043456 124 NNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFM 202 (447)
Q Consensus 124 ~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~ 202 (447)
+|+++++||.++. +++++||++||+++|||||+++++++|+|+|+|+|.|++|+++|++|+.+++.+.||++|.+|.|+
T Consensus 1 ~~~~~~~~g~~~~~~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~ 80 (297)
T cd00770 1 DNVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLV 80 (297)
T ss_pred CceEEEEECCCCCCCCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccc
Confidence 4788999999987 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceee
Q 043456 203 RKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRV 282 (447)
Q Consensus 203 ~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~ 282 (447)
+.++|++||||+.|+++||++++ ++++|+||+|++++++++++++||++||++++++|+|||+|++++|.+++||+|+
T Consensus 81 ~~~l~~~sg~~~~~~~~~f~v~~--~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~ 158 (297)
T cd00770 81 RKEVMEGTGQLPKFDEQLYKVEG--EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRV 158 (297)
T ss_pred cHHHHhhcCcCccChhcccEecC--CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEE
Confidence 99999999999999999999976 5899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEeccc
Q 043456 283 HQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNC 362 (447)
Q Consensus 283 ~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~ 362 (447)
|||+|+|+|+||++++ |+++++++++.+.++|+.|||||+++.++++|+|++++++||+|+|+|++++|.|++|||||
T Consensus 159 reF~~~e~~~f~~~e~--~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~ 236 (297)
T cd00770 159 HQFEKVEQFVFTKPEE--SWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNC 236 (297)
T ss_pred EeeeeeeEEEEECchH--HHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCc
Confidence 9999999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCC-cccCCcccCcC
Q 043456 363 TDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VEVPEVLQPFM 424 (447)
Q Consensus 363 ~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~g-i~iP~~L~py~ 424 (447)
+||||+|++|+|.+++ +++..|+||+||||+|++|+|+|||||||+++| +.+|++|+|||
T Consensus 237 ~d~~s~r~~i~y~~~~--~~~~~~~~~~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~py~ 297 (297)
T cd00770 237 TDFQARRLNIRYRDKK--DGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 (297)
T ss_pred cChhhhhcCcEEecCC--CCCeeeeeEecccchHHHHHHHHHHHhCcCCCCcEeCchhhcccC
Confidence 9999999999999762 256789999999999999999999999999999 56779999997
No 8
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.8e-64 Score=521.02 Aligned_cols=292 Identities=19% Similarity=0.268 Sum_probs=269.2
Q ss_pred CCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHH-HH
Q 043456 113 HDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFL-EK 190 (447)
Q Consensus 113 h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~-~~ 190 (447)
...||+|++|.+ ++++++| ++. +|+ .+|.+++.++|++| +.+|+|+|+|+|.|++|+++|++|+++.+ .+
T Consensus 169 ~~~~~~g~~~~~-~~~~~~~-~~~~~F~-~~h~el~~~~glld-----k~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k 240 (517)
T PRK00960 169 DLTFYVGKAEPG-TIVSESK-KREITFD-GDPTEEAEKLGWVK-----RFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKP 240 (517)
T ss_pred cCccCCCCCCCC-eEEEEeC-CCCCCCC-CCHHHHHHHCCCcc-----ccCCCceEEEEChHHHHHHHHHHHHHHhhHhh
Confidence 338999998877 9999999 555 676 99999999999999 47899999999999999999999999874 67
Q ss_pred CCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC------------------------------CCccccccCCChhH
Q 043456 191 KSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE------------------------------GDDKYLIATAEQPL 240 (447)
Q Consensus 191 ~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~------------------------------~~~~~L~pTsE~~l 240 (447)
.||++|.+|.|++.++|++||||++|.++||.++.. +..|+|+||+|.++
T Consensus 241 ~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~ 320 (517)
T PRK00960 241 LGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPF 320 (517)
T ss_pred cCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHH
Confidence 799999999999999999999999999999998521 23579999999999
Q ss_pred HHHhhccccCCCCcCeEeeccc-cccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc
Q 043456 241 CAYHIDDWIHPSELPIRYAGYS-SCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML 319 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s-~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L 319 (447)
+.+|+++++|+++||+|+++++ +|||+|+| .++||+|+|||+|+|+|+||+|+| |++++++++..++.+++.|
T Consensus 321 y~~~~~~ils~rdLPLrl~e~sG~cFR~EsG----s~~GL~RV~eF~kvE~h~f~tpEq--s~ee~e~ll~~~e~i~~~L 394 (517)
T PRK00960 321 YQFFQGETVDVDELPIKFFDRSGWTYRWEGG----GAHGLERVNEFHRIEIVWLGTPEQ--VEEIRDELLKYAHILAEKL 394 (517)
T ss_pred HHHHhCCcCChhhCCHHHhhccCCceeCCCC----CCCCCcccceeEEEEEEEEeCHHH--HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999954 99999975 479999999999999999999999 9999999999999999999
Q ss_pred CCc-EEEEE----------ecCCCCCcccccccceeeeec---CCCceeeEEEecccchhhhhhcccEEeccCCCCCcee
Q 043456 320 KIP-YQVVA----------IVSGALNDAAAKKLDLEAWFP---ASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQ 385 (447)
Q Consensus 320 gl~-yr~v~----------~~t~dlg~~a~~~~diE~w~p---~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~ 385 (447)
||| ||++. ++++|+++++.++||+|+||| ++++|.||+|||+|+||||+||+|+|.+ ++
T Consensus 395 gLp~~r~v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~farrfnIk~~~-----g~-- 467 (517)
T PRK00960 395 DLEYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFVEGFNIKDYK-----GR-- 467 (517)
T ss_pred CCCceEEecccccccccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhhHhhCcccCC-----CC--
Confidence 999 99998 899999999999999999999 8899999999999999999999998842 23
Q ss_pred EEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCc
Q 043456 386 YVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGK 427 (447)
Q Consensus 386 ~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~ 427 (447)
++|| ||||+|++|+++|||||||.++| .||++++||+++.
T Consensus 468 ~~hT-nctG~g~eR~l~AlLe~hG~d~~-~wPe~~r~~~~~~ 507 (517)
T PRK00960 468 KLWT-GCTGYGLERWVIGFLAQKGFDPE-NWPEEIRKRVGEL 507 (517)
T ss_pred eEee-cceeeHHHHHHHHHHHhcCCCCC-cCCHHHHHhhcCC
Confidence 5999 99999999999999999999999 9999999999764
No 9
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=4e-59 Score=454.11 Aligned_cols=249 Identities=14% Similarity=0.197 Sum_probs=234.5
Q ss_pred HHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEE
Q 043456 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYK 222 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~ 222 (447)
-.+|+.+.|+++. +++|++.|+|.|+++.++|++++.+.+.+.||++|.+|.|.+.++|+++||++.|.++||.
T Consensus 6 ~~~l~~~ag~~~~------~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~ 79 (255)
T cd00779 6 SHKLLLRAGFIRQ------TSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLR 79 (255)
T ss_pred HHHHHHHcCCccc------CCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEE
Confidence 3578899999853 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchH
Q 043456 223 VTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDS 301 (447)
Q Consensus 223 i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s 301 (447)
+.+. +++++|+||+|+++++++++.+.|+++||+|+|++++|||+|+. +.+||+|+|||+|+|+|+||.++. +|
T Consensus 80 ~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~----~~~Gl~R~reF~q~e~~~~~~~~~-~a 154 (255)
T cd00779 80 LKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFLMKDAYSFDIDEE-SL 154 (255)
T ss_pred EecCCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCC----CCCceeeeeeEeHhhheeccCCHH-HH
Confidence 9765 46899999999999999999999999999999999999999974 568999999999999999999852 39
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCC
Q 043456 302 WDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNE 381 (447)
Q Consensus 302 ~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~ 381 (447)
++++++++.++.++|+.|||||+++..+++++|+.++++||+|+|||+++ ++|++|||||+||||+||+|+|.++ +
T Consensus 155 ~~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~lg~~~sr~~~i~~~~~---~ 230 (255)
T cd00779 155 EETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQLGTKYSKALGATFLDE---N 230 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeecchhHHHhcCcEEECC---C
Confidence 99999999999999999999999999999999999999999999999987 8999999999999999999999975 4
Q ss_pred CceeEEEeecccccchhHHHHHHHHh
Q 043456 382 QTKQYVHLLNSTLTATERTICCILEN 407 (447)
Q Consensus 382 ~~~~~~htlngt~~ai~Rll~allE~ 407 (447)
++++++|| ||+|+||+|+|+|||||
T Consensus 231 ~~~~~~~~-~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 231 GKPKPLEM-GCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred CCEEeeEe-cCccchHHHHHHHHHcC
Confidence 67899999 99999999999999996
No 10
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=9.1e-57 Score=438.99 Aligned_cols=247 Identities=18% Similarity=0.188 Sum_probs=230.1
Q ss_pred HHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHH-HHhCCcCCCcCccE
Q 043456 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVM-AKCAQLAQFDEELY 221 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~-~~~G~~~~~~~~lf 221 (447)
..+|++++|++|++. .+|+|+|+|.|+++.++|++++++.+.+.||++|.+|.|++.++| .++|||++|.++||
T Consensus 6 ~~~l~~~~~~~d~~~-----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f 80 (261)
T cd00778 6 YTEVITKAELIDYGP-----VKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVA 80 (261)
T ss_pred HHHHHHHhCCcccCC-----CCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceE
Confidence 468999999999863 468999999999999999999999999999999999999999998 57999999999999
Q ss_pred EEecCC-----CccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE-Eec
Q 043456 222 KVTGEG-----DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITS 295 (447)
Q Consensus 222 ~i~~~~-----~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~-f~~ 295 (447)
++.+.+ ++++|+||+|++++.++++.+.||++||+|+|++++|||+|++ +++||+|+|||+|+|+|+ ||+
T Consensus 81 ~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~----~~~Gl~R~reF~~~d~h~~~~~ 156 (261)
T cd00778 81 WVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK----TTRPFLRTREFLWQEGHTAHAT 156 (261)
T ss_pred EEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCC----CCCceeEeeeeeeeceeeccCC
Confidence 997642 4799999999999999999999999999999999999999984 458999999999999985 888
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHc-CCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEE
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQML-KIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRY 374 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~L-gl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y 374 (447)
+++ |.++++++++++++||+.| ||||+++..|++|+++++.+++|+|+|+| .+++.||+|||||+|+||+||+|+|
T Consensus 157 ~e~--~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~s~r~~i~y 233 (261)
T cd00778 157 EEE--AEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNFSKAFDIKY 233 (261)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEeccccccccchhcCCEE
Confidence 888 9999999999999999999 99999999999999999999999999999 8999999999999999999999999
Q ss_pred eccCCCCCceeEEEeecccccchhHHHHHHHH
Q 043456 375 GQKKSNEQTKQYVHLLNSTLTATERTICCILE 406 (447)
Q Consensus 375 ~~~~~~~~~~~~~htlngt~~ai~Rll~allE 406 (447)
+++ +++.++||| ||+| +++|+|+|||-
T Consensus 234 ~~~---~g~~~~~h~-~~~g-~~~R~i~ali~ 260 (261)
T cd00778 234 QDK---DGQKEYVHQ-TSWG-ISTRLIGAIIM 260 (261)
T ss_pred ECC---CCCCcCcEE-eccc-HHHHHHHHHHh
Confidence 986 456789998 8887 67999999984
No 11
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=1.1e-55 Score=431.75 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=228.3
Q ss_pred HHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCC-cCccE
Q 043456 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQF-DEELY 221 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~-~~~lf 221 (447)
..+|+.+.|+++.. .++|++.|+|.|+++.+.|++++.+.+.+.||++|.+|.|++.++|+++|+++++ .+++|
T Consensus 6 ~~~~l~~ag~~~~~-----~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~ 80 (264)
T cd00772 6 SLEHIGKAELADQG-----PGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELA 80 (264)
T ss_pred HHHHHHhcCCcccc-----CCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccce
Confidence 34788999999974 3689999999999999999999999999999999999999999999999999884 48899
Q ss_pred EEecCC-----CccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEE-ec
Q 043456 222 KVTGEG-----DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCI-TS 295 (447)
Q Consensus 222 ~i~~~~-----~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f-~~ 295 (447)
.+.+.+ ++++|+||+|+++++++++++.||++||++++++++|||+|++ +++||+|+|||+|+|+|+| |+
T Consensus 81 ~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r----~~~Gl~R~reF~~~e~~~~~~~ 156 (264)
T cd00772 81 VFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR----PRFGFLRAREFIMKDGHSAHAD 156 (264)
T ss_pred EEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCC----CCCCcceeeEEEEeeeEEecCC
Confidence 997653 6899999999999999999999999999999999999999984 5689999999999999999 67
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcC-CcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcc--c
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQMLK-IPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLE--I 372 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~Lg-l~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~--i 372 (447)
+++ |++++..+++++++||+.|| |||+++.++++|+|.+++++||+|+|||. +.+.++.+||+|+|||+++++ |
T Consensus 157 ~e~--a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p~-~~~~~~~~~~~~~~~~~~~~~~~i 233 (264)
T cd00772 157 AEE--ADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALMED-GKAKQAETGHIFGEGFARAFDLKA 233 (264)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECCC-CCEeEEEeeeeccCCchhhcCCcc
Confidence 777 99999999999999999999 99999999999999999999999999993 456777788889999999555 9
Q ss_pred EEeccCCCCCceeEEEeecccccchhHHHHHHHHh
Q 043456 373 RYGQKKSNEQTKQYVHLLNSTLTATERTICCILEN 407 (447)
Q Consensus 373 ~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~ 407 (447)
+|+++ ++++.+||| ||||+|++|+|+||||.
T Consensus 234 ~~~~~---~~~~~~~~~-n~~gi~~~R~l~aile~ 264 (264)
T cd00772 234 KFLDK---DGKEKFFEM-GCWGIGISRFIGAIIEQ 264 (264)
T ss_pred EEECC---CCCEEEEEe-ccccchHHHHHHHhhcC
Confidence 99975 467899999 99999999999999984
No 12
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2.2e-52 Score=415.50 Aligned_cols=263 Identities=19% Similarity=0.274 Sum_probs=238.5
Q ss_pred CHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccE
Q 043456 142 NHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELY 221 (447)
Q Consensus 142 ~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf 221 (447)
||++||++++++||+++ +|+|+++|+|.|+++.++|++++.+.+.+.||++|.||.|.+.++|.++||++.|.++||
T Consensus 1 dH~~l~~~~~l~~~~~~---~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my 77 (298)
T cd00771 1 DHRRLGGELELFFFFDE---AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMF 77 (298)
T ss_pred ChhHHHHHcCCcccCCC---CCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCce
Confidence 79999999999999875 799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchH
Q 043456 222 KVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDS 301 (447)
Q Consensus 222 ~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s 301 (447)
++++.+++++|+||+|++++.+|++.+.||++||+|++++|+|||+|++ | +++||+|+|||+|+|+|+||++++ +
T Consensus 78 ~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~--~-~~~Gl~R~reF~q~e~~i~~~~e~--~ 152 (298)
T cd00771 78 PFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQS--G-ALHGLTRVRGFTQDDAHIFCTPDQ--I 152 (298)
T ss_pred EeccCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCC--C-CCCCccccccEEECCEEEEeCCcc--h
Confidence 9977667899999999999999999999999999999999999999986 4 789999999999999999999988 9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEec---------------------
Q 043456 302 WDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCS--------------------- 360 (447)
Q Consensus 302 ~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~s--------------------- 360 (447)
.+++.++++++.++|+.||++++.+.+++++ +...+|+|+|+|+++.|+|+.+|+
T Consensus 153 ~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~----~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~ 228 (298)
T cd00771 153 KEEIKGVLDLIKEVYSDFGFFDYKVELSTRP----EKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFH 228 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEEEcCh----hHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEE
Confidence 9999999999999999999999999999997 556889999999877766553332
Q ss_pred -------------ccchhh-hhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccC
Q 043456 361 -------------NCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQP 422 (447)
Q Consensus 361 -------------n~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~p 422 (447)
.+.||+ ++||+|+|.+++++...|..+|+ +.-.+++|+|++|||+|++ .||.||+|
T Consensus 229 ~~d~~gr~~q~~t~qld~~~~~~f~l~y~~~~~~~~~pv~ih~--~~~Gs~eR~i~~l~e~~~g----~~P~wlaP 298 (298)
T cd00771 229 VKDALGREWQCSTIQLDFNLPERFDLTYIGEDGEKKRPVMIHR--AILGSIERFIGILIEHYAG----KFPLWLAP 298 (298)
T ss_pred EEeCCCCeeecceeEeeccChhhcCCEEEccCCCccCCEEEEe--CCCCcHHHHHHHHHHhhCC----CCCCccCc
Confidence 235775 89999999988654556777896 3344699999999999999 89999998
No 13
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=1.3e-51 Score=445.12 Aligned_cols=297 Identities=19% Similarity=0.269 Sum_probs=250.8
Q ss_pred CCCCCceEEEeecCCCC-------------CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHH
Q 043456 120 NDEANNAIVRTWGEKRT-------------EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLD 186 (447)
Q Consensus 120 ~~e~~~~~i~~~g~~~~-------------~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~ 186 (447)
.|+++....|.||.... +++.+||++||++++||+|++ .+|+|+|+|+|.|++|+++|++|+++
T Consensus 183 g~~~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~---~~g~G~~~~~p~G~~l~~~L~~~~~~ 259 (614)
T PLN02837 183 GDEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQD---DAGGGLVFWHPKGAIVRHIIEDSWKK 259 (614)
T ss_pred ccccCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCc---CcCCcceEEechHHHHHHHHHHHHHH
Confidence 34556667788887632 468899999999999999987 48999999999999999999999999
Q ss_pred HHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeecccccc
Q 043456 187 FLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCF 265 (447)
Q Consensus 187 ~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~f 265 (447)
.+.+.||++|.||+|++.++|++||||++|+++||.+.+. ++.|+|+||+|+.++.+|++.+.||++||+|++|+|+||
T Consensus 260 ~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~ 339 (614)
T PLN02837 260 MHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVY 339 (614)
T ss_pred HHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccc
Confidence 9999999999999999999999999999999999998553 567899999999999999999999999999999999999
Q ss_pred ccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC---C--------
Q 043456 266 RKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGAL---N-------- 334 (447)
Q Consensus 266 R~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dl---g-------- 334 (447)
|+|++ | .++||+|+|||+|+|+|+||+++| +.++++.+++.+.++|+.||+|++++.++++.. |
T Consensus 340 R~E~~--g-~~~GL~RvreF~~~e~h~f~~~~q--~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~ 414 (614)
T PLN02837 340 RYELS--G-SLHGLFRVRGFTQDDAHIFCLEDQ--IKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKA 414 (614)
T ss_pred cCCCC--C-CCcCcccccceEECeEEEEeCHHH--HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHH
Confidence 99995 5 589999999999999999999999 999999999999999999999999999999752 1
Q ss_pred --------------------cccccccceeeeecCC-CceeeEEEecccchhh-hhhcccEEeccCCCCCceeEEEeecc
Q 043456 335 --------------------DAAAKKLDLEAWFPAS-QTYRELVSCSNCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNS 392 (447)
Q Consensus 335 --------------------~~a~~~~diE~w~p~~-~~~~ev~s~sn~~D~q-s~rl~i~y~~~~~~~~~~~~~htlng 392 (447)
..+.....+++-++.. |+..+++++ +.||+ +.||+++|.++++....|.++|+ +
T Consensus 415 ~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~ti--qldf~~~~~f~l~y~~~d~~~~~pv~ih~--~ 490 (614)
T PLN02837 415 TTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTI--QVDFNLPERFDITYVDSNSEKKRPIMIHR--A 490 (614)
T ss_pred HHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeecce--eEeecchhhcCcEEECCCCCccCCEEEEc--C
Confidence 1222223333333332 332233332 36886 99999999998654456788996 3
Q ss_pred cccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCCC
Q 043456 393 TLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKA 434 (447)
Q Consensus 393 t~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~~ 434 (447)
+-++++|+|++|+|+|.+ .||.||+|++ +.+||...
T Consensus 491 ~~G~~eRlia~Lie~~~g----~~P~~laP~q--V~IIpi~~ 526 (614)
T PLN02837 491 ILGSLERFFGVLIEHYAG----DFPLWLAPVQ--ARVLPVTD 526 (614)
T ss_pred CccCHHHHHHHHHHHcCC----CCCCCCCCcc--EEEEEeCh
Confidence 323799999999999998 4999999999 88999863
No 14
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9e-51 Score=427.10 Aligned_cols=274 Identities=17% Similarity=0.195 Sum_probs=252.2
Q ss_pred CCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHH-hCCcCCCcC
Q 043456 140 LKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQFDE 218 (447)
Q Consensus 140 ~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~~~~ 218 (447)
...|.+|+++++|+|+.+ .+|+|+|+|.|+++.++|++++.+.+.+.||++|.+|.|++.++|.. +||+++|.+
T Consensus 15 ~~w~~~~~~~~~l~d~~~-----v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~ 89 (477)
T PRK08661 15 SEWYNDVVKKAELADYSP-----VKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAP 89 (477)
T ss_pred HHHHHHHHHHccCcccCC-----CCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhccc
Confidence 467999999999999976 26899999999999999999999999999999999999999999965 799999999
Q ss_pred ccEEEecC-----CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE-
Q 043456 219 ELYKVTGE-----GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC- 292 (447)
Q Consensus 219 ~lf~i~~~-----~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~- 292 (447)
+||.+.+. +++|+|+||+|++++.+|++.+.||++||+|+||+++|||+|++ ++||+|+|||+|+|+|+
T Consensus 90 e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-----~rgl~R~rEF~~~E~h~~ 164 (477)
T PRK08661 90 EVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-----TRPFLRTREFLWQEGHTA 164 (477)
T ss_pred ccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-----CCCcceeeeEEEcceeee
Confidence 99999764 25799999999999999999999999999999999999999984 57999999999999998
Q ss_pred EecCCcchHHHHHHHHHHHHHHHH-HHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcc
Q 043456 293 ITSPNGNDSWDMHEEMIKNSEEFY-QMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLE 371 (447)
Q Consensus 293 f~~~e~~~s~~~~~~~~~~~~~i~-~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~ 371 (447)
+|++++ +.+++..+++.|.++| +.|||||+.+..+.+|.++++..++|+|+|||+ ++..|++++++|++++|++|+
T Consensus 165 ~~~~ee--a~~e~~~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~Lg~~~s~~f~ 241 (477)
T PRK08661 165 HATEEE--AEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYLGQNFAKAFD 241 (477)
T ss_pred eCCHHH--HHHHHHHHHHHHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEecccccchhHhcC
Confidence 566677 9999999999999999 999999999999999999999999999999997 678899999999999999999
Q ss_pred cEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 372 IRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 372 i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
|+|.++ +++..+||+. +.|+ ++|+|+||||+|+++.|+.||.+++|++ +.+||..
T Consensus 242 i~y~d~---~g~~~~v~~~-s~G~-~~R~i~alie~~~D~~Gl~lP~~iAP~q--V~Iipi~ 296 (477)
T PRK08661 242 IKFQDK---DGKLEYVHQT-SWGV-STRLIGALIMTHGDDKGLVLPPKIAPIQ--VVIVPIF 296 (477)
T ss_pred CEEECC---CCCEeeeEEe-cccH-HHHHHHHHHHHhCccCCCccCcccCCCe--EEEEEec
Confidence 999986 4667899973 5554 4999999999999999999999999999 8889884
No 15
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-50 Score=434.01 Aligned_cols=278 Identities=19% Similarity=0.219 Sum_probs=240.2
Q ss_pred CCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcC
Q 043456 139 KLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDE 218 (447)
Q Consensus 139 ~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~ 218 (447)
..+||++||+++|||||+++ +++|+++|+|.|++|.++|++|+.+.+.+.||++|.+|.|++.++|+.+|||++|++
T Consensus 195 ~~~dH~~Lg~~~~L~d~~~~---s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e 271 (613)
T PRK03991 195 GEPPHVKLMREKELADYEPA---SDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGE 271 (613)
T ss_pred CCCCHHHHHHHCCCcccccc---cCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccch
Confidence 46799999999999999874 568899999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeecccc-ccccCccCCCCCCcCceeeeeeeeeeEEEEecC-
Q 043456 219 ELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSS-CFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP- 296 (447)
Q Consensus 219 ~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~-~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~- 296 (447)
+||.+++++++|+|+||+|++++.+|++.++||++||+|++++|+ |||+|++ | +++||+|+|||+|+|+|+||+|
T Consensus 272 ~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~--g-~l~GL~RvReF~~~D~h~f~~~~ 348 (613)
T PRK03991 272 RQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQR--G-ELVGLKRLRAFTMPDMHTLCKDM 348 (613)
T ss_pred hceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCC--C-CCcCcccccceEeeeEEEEECCH
Confidence 999998766799999999999999999999999999999999999 9999986 5 7899999999999999999997
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC-------------------------Ccccc--cccceeeeecC
Q 043456 297 NGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGAL-------------------------NDAAA--KKLDLEAWFPA 349 (447)
Q Consensus 297 e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dl-------------------------g~~a~--~~~diE~w~p~ 349 (447)
+| ++++++.+++++.++|+.||++|+++..++++. |..++ .++|+.+.+ +
T Consensus 349 eq--a~~e~~~~l~~~~~i~~~lGl~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d-~ 425 (613)
T PRK03991 349 EQ--AMEEFEKQYEMILETGEDLGRDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFID-S 425 (613)
T ss_pred HH--HHHHHHHHHHHHHHHHHHcCCCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeC-C
Confidence 78 999999999999999999999999998877653 11112 223333332 2
Q ss_pred CCceeeEEEec-ccchhh-hhhcccEEeccCCCCCceeEEEeecccccc-hhHHHHHHHHhcCCC----CCcccCCcccC
Q 043456 350 SQTYRELVSCS-NCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTA-TERTICCILENYQKE----DGVEVPEVLQP 422 (447)
Q Consensus 350 ~~~~~ev~s~s-n~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~a-i~Rll~allE~~q~~----~gi~iP~~L~p 422 (447)
.++- ..|+ .+.|++ +.||+++|.+. +++...+++|+|++++ ++|+|+||||++.++ .|++||.||+|
T Consensus 426 ~gr~---~q~~T~qld~~~~~~f~l~y~d~---~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP 499 (613)
T PRK03991 426 LGRP---IENPTVQIDVENAERFGIKYVDE---NGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSP 499 (613)
T ss_pred CCCE---EEEeeeecCcccchhCCCEEECC---CCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccC
Confidence 2222 3343 246775 99999999986 3555567777777775 999999999999998 67999999999
Q ss_pred cCCCceeecCC
Q 043456 423 FMGGKTFLPFK 433 (447)
Q Consensus 423 y~~g~~~i~~~ 433 (447)
++ +.+||..
T Consensus 500 ~q--V~IIpi~ 508 (613)
T PRK03991 500 TQ--VRVIPVS 508 (613)
T ss_pred ce--EEEEEeC
Confidence 99 8899875
No 16
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=3e-50 Score=413.86 Aligned_cols=282 Identities=17% Similarity=0.210 Sum_probs=249.1
Q ss_pred ceEEEeecCCCC-CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHH-HHCCCeEecCCccC
Q 043456 125 NAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFL-EKKSYTLLHTPFFM 202 (447)
Q Consensus 125 ~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~-~~~G~~~v~~P~l~ 202 (447)
..++++||+++. +|+ .+|.+|++++|++| +.+|+|+|+|+|.|++|++||++|+++.+ .+.||++|++|.|+
T Consensus 179 ~~~~~~~~~~~~~~F~-~~h~el~~k~glid-----k~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LI 252 (520)
T TIGR00415 179 GEIIAESKAKRDFFFD-GDPTDEAEKLGWVK-----KFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLI 252 (520)
T ss_pred CceeeecCCCCCCCCC-CCHHHHHHHCCCee-----EEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEe
Confidence 358999999887 676 99999999999997 47999999999999999999999999876 45699999999999
Q ss_pred cHHHHHHhCCcCCCcCccEEEec------------------------------CCCccccccCCChhHHHHhhccccCCC
Q 043456 203 RKEVMAKCAQLAQFDEELYKVTG------------------------------EGDDKYLIATAEQPLCAYHIDDWIHPS 252 (447)
Q Consensus 203 ~~~~~~~~G~~~~~~~~lf~i~~------------------------------~~~~~~L~pTsE~~l~~l~~~~~~s~~ 252 (447)
+.++|.++||+++|.++||.++. ++.+|+|+||||+|++++|++++++++
T Consensus 253 p~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~ 332 (520)
T TIGR00415 253 PLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAE 332 (520)
T ss_pred cHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChh
Confidence 99999999999999999999852 112789999999999999999999999
Q ss_pred CcCeEeeccc-cccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEec--
Q 043456 253 ELPIRYAGYS-SCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIV-- 329 (447)
Q Consensus 253 ~LPlrl~~~s-~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~-- 329 (447)
+||+++++++ +|||+|+|+ ++||+|+|||.|+|+|+++++++ |++.++++++.++++++.|+||||++..+
T Consensus 333 dLPlk~~~~s~~CFR~EaGs----trGL~RvhEF~kvE~v~~~tpEe--a~e~~e~mle~~~~~l~~L~Lpyrv~~adDP 406 (520)
T TIGR00415 333 DKPIKFFDRSGWTYRWEAGG----AKGLDRVHEFLRVECVWIAEPEE--TEEIRDKTLELAEDAADELDLEWWTEVGDDP 406 (520)
T ss_pred hCCeeEEEEecCeEeCCCCC----CCCCceeeEEEEEEEEEEeCHHH--HHHHHHHHHHHHHHHHHHcCCCeEEeecCCc
Confidence 9999999966 799999973 69999999999999999999988 99999999999999999999999998644
Q ss_pred ---------CCCCCcccccccceeeeecCCCce---eeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccch
Q 043456 330 ---------SGALNDAAAKKLDLEAWFPASQTY---RELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTAT 397 (447)
Q Consensus 330 ---------t~dlg~~a~~~~diE~w~p~~~~~---~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai 397 (447)
++|++++++++||+|+|+|+...| .-+.|++..+|..+++|+|+ + ++..++|| .|.|+++
T Consensus 407 Ff~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~hF~k~F~I~--~-----~~~~~a~t-tC~G~gl 478 (520)
T TIGR00415 407 FYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGTHFIEGFRIK--D-----AKGLNIWT-GCTGIGI 478 (520)
T ss_pred ccccccCcccccccCcccceEEEEEEEccccCCCCCcEEEEeechhcccccccCcc--c-----CCCCeEEE-eeeeccH
Confidence 677899999999999999998854 45677776789999999997 2 23458998 5899999
Q ss_pred hHHHHHHHHhcCCCCCcccCCcccCcCCCc
Q 043456 398 ERTICCILENYQKEDGVEVPEVLQPFMGGK 427 (447)
Q Consensus 398 ~Rll~allE~~q~~~gi~iP~~L~py~~g~ 427 (447)
+|+++|||.+|+-+- =.||+..+.-.++.
T Consensus 479 eR~i~Ali~~HG~d~-~~Wp~~vr~~~~~~ 507 (520)
T TIGR00415 479 SRWIVGFLAQKGFEF-DDWHDFIGEKIEGL 507 (520)
T ss_pred HHHHHHHHHHhCCCh-hhCCHHHHHHhccc
Confidence 999999999987541 16888888777653
No 17
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=1.1e-49 Score=418.17 Aligned_cols=271 Identities=18% Similarity=0.238 Sum_probs=250.5
Q ss_pred HHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccE
Q 043456 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELY 221 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf 221 (447)
..+|+.+.||+|+.. .+|+++|+|.|+++.+.|.+++.+.+.+.||++|.+|.|++.++|+++| ||++|.++||
T Consensus 12 y~~l~~~~~li~~~~-----~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f 86 (472)
T TIGR00408 12 YHQILEKAEIIDYYP-----VKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVY 86 (472)
T ss_pred HHHHHHHcCCccccC-----CCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcE
Confidence 468999999999843 4789999999999999999999999999999999999999999999876 9999999999
Q ss_pred EEecCC-----CccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEec
Q 043456 222 KVTGEG-----DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITS 295 (447)
Q Consensus 222 ~i~~~~-----~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~ 295 (447)
++++.+ ++|+|+||+|++++.+|++.+.||++||+|+||+++|||+|.. .++||+|+|||+|+|+| .||+
T Consensus 87 ~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~----~~~gl~R~rEF~~~e~h~~~~~ 162 (472)
T TIGR00408 87 WITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETK----HTRPFLRTREFTWQEAHTAHAT 162 (472)
T ss_pred EEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCC----CCCCcceeeeeehhhhhhhhCC
Confidence 998753 6899999999999999999999999999999999999999985 36899999999999999 5888
Q ss_pred CCcchHHHHHHHHHHHHHHHHH-HcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEE
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQ-MLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRY 374 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~-~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y 374 (447)
+++ +.+++..+++.+.++|+ .|||||+++..+..|.++++..++|+|+|||.. ++.|++++++|++++|++|+|+|
T Consensus 163 ~e~--a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~dg-r~~q~~t~~~Lg~~~sk~f~i~y 239 (472)
T TIGR00408 163 AEE--AEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPDG-RTLQIATSHNLGQNFAKTFEIKF 239 (472)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCccceEEEeEEEcCC-CEEEEeeeecccccccHhcCCEE
Confidence 888 99999999999999998 999999999999889888899999999999995 78899999999999999999999
Q ss_pred eccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecC
Q 043456 375 GQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPF 432 (447)
Q Consensus 375 ~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~ 432 (447)
.++ ++++.++|+ ++.|++ +|+|+||||+|+++.|+.||.+++|++ +.+||.
T Consensus 240 ~~~---~g~~~~~h~-~s~Gi~-eRli~~lie~~~d~~gl~~P~~iaP~q--V~Iipi 290 (472)
T TIGR00408 240 ETP---TGDKEYAYQ-TSYGIS-TRVIGALIAIHSDEKGLVLPPRVAPIQ--VVIIPI 290 (472)
T ss_pred ECC---CCCEEeeEE-ccccHH-HHHHHHHHHHhCCCCceeeChhhCcce--EEEEEc
Confidence 986 467889997 677753 999999999999999999999999999 888985
No 18
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-49 Score=380.41 Aligned_cols=276 Identities=18% Similarity=0.300 Sum_probs=240.8
Q ss_pred CCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCcc
Q 043456 141 KNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEEL 220 (447)
Q Consensus 141 ~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~l 220 (447)
..-.+|+.+.|+|.- +.+|+|-|+|.|.|..+.+.+.+..+|.+.|.+.|++|.+.+.++|+++|+|+..+.+|
T Consensus 25 ~~aq~LL~e~GfI~p------s~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl 98 (457)
T KOG2324|consen 25 ETAQELLQEVGFIRP------SSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSEL 98 (457)
T ss_pred hHHHHHHHHhCcccc------CCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhh
Confidence 344578889999853 66999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC-CCccccccCCChhHHHHhhccc-cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCc
Q 043456 221 YKVTGE-GDDKYLIATAEQPLCAYHIDDW-IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNG 298 (447)
Q Consensus 221 f~i~~~-~~~~~L~pTsE~~l~~l~~~~~-~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~ 298 (447)
|++.|+ +++|||.||+|+.++.+.+..+ +||++||+++||++++||+|.+++| ||+|-|||.|.|||+|+.+++
T Consensus 99 ~rl~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRf----GLlRgREFlMKDmYsFd~~~e 174 (457)
T KOG2324|consen 99 FRLHDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRF----GLLRGREFLMKDMYSFDSDEE 174 (457)
T ss_pred eEeeccCCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccc----cchhhHHHHHhhhhcccCCHH
Confidence 999987 6899999999999999999987 5999999999999999999998765 999999999999999999865
Q ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccce--------eeeecCCCc--------eeeEEEeccc
Q 043456 299 NDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDL--------EAWFPASQT--------YRELVSCSNC 362 (447)
Q Consensus 299 ~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~di--------E~w~p~~~~--------~~ev~s~sn~ 362 (447)
.|+++|+.+.++|.+||++||+||..|.+.+|++|+.-|++|++ -+.+|+++- .-.+.+|.+|
T Consensus 175 -tA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C 253 (457)
T KOG2324|consen 175 -TAQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKC 253 (457)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcc
Confidence 68999999999999999999999999999999999999999965 223333310 1112345555
Q ss_pred ch-------------------hhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCc
Q 043456 363 TD-------------------YQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPF 423 (447)
Q Consensus 363 ~D-------------------~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py 423 (447)
.+ -.|.-||.+|.+. .+||+++| |.|+|++|+|+|+|.+|-..+++|++||..|+||
T Consensus 254 ~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~---~gKpe~l~-MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy 329 (457)
T KOG2324|consen 254 NEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNV---EGKPEFLH-MGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPY 329 (457)
T ss_pred cCCCcccccceEEEEEEEeccccccccCceeeee---cCCcceEE-ecceeccHHHHHHHHHHHhccccccccccccCcc
Confidence 33 2344566666554 57899999 5899999999999999999999999999999999
Q ss_pred CCCceeecCC
Q 043456 424 MGGKTFLPFK 433 (447)
Q Consensus 424 ~~g~~~i~~~ 433 (447)
. +|+|+|+
T Consensus 330 ~--vcli~pk 337 (457)
T KOG2324|consen 330 K--VCLIGPK 337 (457)
T ss_pred e--eEEeccC
Confidence 9 9999987
No 19
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.4e-48 Score=400.84 Aligned_cols=279 Identities=12% Similarity=0.166 Sum_probs=245.3
Q ss_pred CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCC
Q 043456 137 EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQF 216 (447)
Q Consensus 137 ~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~ 216 (447)
+.+..+|..|. +.|+++. .++|+|+|+|.|+++.++|++++.+.+.+.||++|.+|.|.+.++|+.+|||+.|
T Consensus 17 ~~~~~~~~ll~-r~g~~~~------~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~ 89 (439)
T PRK12325 17 EAEIVSHRLML-RAGMIRQ------QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAY 89 (439)
T ss_pred ccchHHHHHHH-HcCCccc------cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCcccc
Confidence 55678897775 5599864 4799999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEec
Q 043456 217 DEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 (447)
Q Consensus 217 ~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~ 295 (447)
+++||.+.+. +++|+|+||+|+.++.++++.+.||++||+|+||+++|||+|++ +.+||+|+|||+|.|+|+||.
T Consensus 90 ~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~----~~~GL~R~reF~~~D~h~f~~ 165 (439)
T PRK12325 90 GKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR----PRFGVMRGREFLMKDAYSFDL 165 (439)
T ss_pred chhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCC----CCCCccccceEeEeccEEEeC
Confidence 9999999765 57899999999999999999999999999999999999999985 357999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccc-------eeeee---------------------
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLD-------LEAWF--------------------- 347 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~d-------iE~w~--------------------- 347 (447)
+.+ ++.+++.++++++.++|+.|||+|+.|.++++.+|+..+++|. .+.|.
T Consensus 166 ~~~-~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l 244 (439)
T PRK12325 166 DEE-GARHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADL 244 (439)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHH
Confidence 733 4999999999999999999999999999999999988887763 22221
Q ss_pred -----------------cCCCc-------------eeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccch
Q 043456 348 -----------------PASQT-------------YRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTAT 397 (447)
Q Consensus 348 -----------------p~~~~-------------~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai 397 (447)
++.+. -.||+++.++++-.+++|+++|.++ +++++.+|+ ++.|+++
T Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~---~g~~~~i~~-~~~GiGi 320 (439)
T PRK12325 245 QPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGP---DGKEVPVHM-GSYGIGV 320 (439)
T ss_pred HHHHhhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECC---CCCEEeEEE-eeeECCH
Confidence 11111 1367778888877799999999986 467788994 7889899
Q ss_pred hHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 398 ERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 398 ~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+|+|++|+|+|.++.|+.||.|++|++ +.+||.+
T Consensus 321 eRli~~l~e~~~d~~g~~~P~~iaP~q--V~Iipi~ 354 (439)
T PRK12325 321 SRLVAAIIEASHDDKGIIWPESVAPFK--VGIINLK 354 (439)
T ss_pred HHHHHHHHHHhCccCCCcCCCCcCCeE--EEEEecC
Confidence 999999999999999999999999999 8899984
No 20
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-47 Score=409.24 Aligned_cols=211 Identities=16% Similarity=0.218 Sum_probs=195.2
Q ss_pred CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCC
Q 043456 137 EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQF 216 (447)
Q Consensus 137 ~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~ 216 (447)
+....+|.-| .+.|+++. +++|+|+|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|+++|||+.|
T Consensus 17 ~~~~~s~~ll-~~ag~i~~------~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~ 89 (565)
T PRK09194 17 DAEVISHQLL-LRAGYIRK------LASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEY 89 (565)
T ss_pred ccchhhHHHH-HhCCCccc------cCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCcccc
Confidence 3456677555 67799863 5799999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEec
Q 043456 217 DEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 (447)
Q Consensus 217 ~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~ 295 (447)
+++||++.++ +++|+|+||+|.+++.++++.+.||++||+|+||+++|||+|++ +.+||+|+|||+|+|+|+||.
T Consensus 90 ~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~r----p~~Gl~R~reF~q~d~~~f~~ 165 (565)
T PRK09194 90 GPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFIMKDAYSFHA 165 (565)
T ss_pred chhceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCC----CCCcccccccEEEeeEEEEcC
Confidence 9999999876 57899999999999999999999999999999999999999985 468999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccc
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCT 363 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~ 363 (447)
+++ +++.+|+++++++.++|+.|||||+++..++|+||+..+++| |+|+..+|.++.||++|+
T Consensus 166 ~~~-~a~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~e~----~~~~~~g~~~~~~c~~c~ 228 (565)
T PRK09194 166 DEE-SLDETYDAMYQAYSRIFDRLGLDFRAVEADSGAIGGSASHEF----MVLADSGEDTIVYSDESD 228 (565)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHhCCccEEEEcccccCCCceeEEE----EEecCCCceEEEEeCCCC
Confidence 765 367899999999999999999999999999999999999998 999999999999999874
No 21
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=2.5e-47 Score=407.15 Aligned_cols=208 Identities=17% Similarity=0.234 Sum_probs=188.2
Q ss_pred CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCC
Q 043456 137 EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQF 216 (447)
Q Consensus 137 ~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~ 216 (447)
+....+| +|+.+.|+++. +++|+|+|+|.|+++.++|++++++++.+.||++|.+|.|.+.++|+.+|+|+.|
T Consensus 17 ~~~~~s~-~ll~rag~i~~------~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~ 89 (568)
T TIGR00409 17 DAEVKSH-QLLLRAGFIRR------LGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTY 89 (568)
T ss_pred ccchhhH-HHHHhCCCccc------cCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCcc
Confidence 4456677 55578899963 5799999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEec
Q 043456 217 DEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 (447)
Q Consensus 217 ~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~ 295 (447)
+++||++.++ +++|+|+||+|+.++.++++.+.||++||+++||+++|||+|++ +.+||+|+|||+|.|+|+||.
T Consensus 90 ~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~r----pr~Gl~R~REF~~~d~~~f~~ 165 (568)
T TIGR00409 90 GPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFIMKDAYSFHS 165 (568)
T ss_pred chhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCC----CCCCccccccEEEEEEEEEeC
Confidence 9999999876 57899999999999999999999999999999999999999985 568999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEec
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCS 360 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~s 360 (447)
+++ +++++|+.|+++|.+||++|||||+++.+++|+||++++++||++.+ .++.+|.+|+
T Consensus 166 ~~~-~a~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~----~ge~~i~~c~ 225 (568)
T TIGR00409 166 DEE-SLDATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLAE----SGEDTIVYSD 225 (568)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEecC----CCceEEEEec
Confidence 855 47789999999999999999999999999999999999999998763 2335555555
No 22
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.8e-47 Score=403.42 Aligned_cols=293 Identities=17% Similarity=0.274 Sum_probs=252.7
Q ss_pred CCCCceEEEeecCCCC-------------CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHH
Q 043456 121 DEANNAIVRTWGEKRT-------------EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF 187 (447)
Q Consensus 121 ~e~~~~~i~~~g~~~~-------------~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~ 187 (447)
|+++..+.|.||.... +++.+||++||++++||+|++ .+|+|+++|+|.|++++++|++|+++.
T Consensus 105 ~~~~~~l~Riyg~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~---~~~~G~~~~lP~G~~i~~~L~~~~r~~ 181 (545)
T PRK14799 105 PNPNEQYVRIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHE---EAGSGLVLFHPKGQTIRNELIAFMREI 181 (545)
T ss_pred CccCceeEEEEEeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCccccc---ccCCcceEEcChHHHHHHHHHHHHHHH
Confidence 5777888899998642 478999999999999999987 579999999999999999999999999
Q ss_pred HHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeecccccccc
Q 043456 188 LEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRK 267 (447)
Q Consensus 188 ~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~ 267 (447)
+.+.||++|.||.|.+.++|+.+|||++|.++||.++..+++++|+||+|++++.+|++...||++||+|++++|+|||+
T Consensus 182 ~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~ 261 (545)
T PRK14799 182 NDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRW 261 (545)
T ss_pred HHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecC
Confidence 99999999999999999999999999999999999966578999999999999999999999999999999999999999
Q ss_pred CccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc---EEEEEecCCC---CC-------
Q 043456 268 EAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP---YQVVAIVSGA---LN------- 334 (447)
Q Consensus 268 E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~d---lg------- 334 (447)
|.+ | .++||+|+|||+|.|+|+||+++| +.+++.++++.+.++|+.||++ |++ .++++. +|
T Consensus 262 E~s--g-~l~GL~RvReF~Q~DaHif~~~~q--~~~E~~~~l~~i~~vy~~fG~~~~~~~i-~ls~Rpe~~~G~~~~wdk 335 (545)
T PRK14799 262 EKK--G-ELYGLLRVRGFVQDDGHIFLREDQ--LREEIKMLISKTVEVWHKFGFKDDDIKP-YLSTRPDESIGSDELWEK 335 (545)
T ss_pred CCC--C-CccccccceeEEEcccEEEeCHHH--HHHHHHHHHHHHHHHHHHhCCCcccEEE-EEEcChhhhcCCHHHHHH
Confidence 986 5 789999999999999999999998 8889999999999999999996 665 344322 11
Q ss_pred -----------------------cccccccceeeeecCCCceeeEEEecccchhh-hhhcccEEeccCCCCCceeEEEee
Q 043456 335 -----------------------DAAAKKLDLEAWFPASQTYRELVSCSNCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLL 390 (447)
Q Consensus 335 -----------------------~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~q-s~rl~i~y~~~~~~~~~~~~~htl 390 (447)
+-...++|+++ .++.+++.++++++ .||+ ++||+++|.+.++....|.++|+
T Consensus 336 a~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v-~dalgr~~q~~Tiq--ldf~lp~rf~Ley~~~~~~~~~pv~ihr- 411 (545)
T PRK14799 336 ATNALISALQESGLKFGIKEKEGAFYGPKIDFEI-RDSLGRWWQLSTIQ--VDFNLPERFKLEYIDKDGIKKRPVMVHR- 411 (545)
T ss_pred HHHHHHHHHHHcCCCeEEecceeccccCccceEe-hhhcCchhhhhhhh--hhcCcccccceEEEcCCCCCcccEEEEc-
Confidence 11113566666 56667777776665 8998 99999999987544446788997
Q ss_pred cccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 391 NSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 391 ngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
|..++++|++++|+|++++ .||.|++|.+ +.+||..
T Consensus 412 -~~~GgiERli~iL~e~~~G----~~P~wlaP~q--V~Iipi~ 447 (545)
T PRK14799 412 -AIYGSIDRFVAILLEHFKG----KLPTWLSSVQ--VRVLPIT 447 (545)
T ss_pred -cCCCCHHHHHHHHHHHcCC----CCCCCCCCce--EEEEEcC
Confidence 5555799999999999865 5999999998 8888876
No 23
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=3.2e-45 Score=400.24 Aligned_cols=290 Identities=18% Similarity=0.293 Sum_probs=243.0
Q ss_pred CCCceEEEeecCCCC-------------CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHH
Q 043456 122 EANNAIVRTWGEKRT-------------EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFL 188 (447)
Q Consensus 122 e~~~~~i~~~g~~~~-------------~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~ 188 (447)
.++..+.|.||.... +++.+||++||++++||+|++. ++|+++|+|.|+++.++|++|+++.+
T Consensus 260 ~~~~~lqRi~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~----~~G~~~~lP~g~~i~~~l~~~~~~~~ 335 (686)
T PLN02908 260 VDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHEL----SPGSCFFLPHGARIYNKLMDFIREQY 335 (686)
T ss_pred CcchhhEEEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCC----CCcceEEechHHHHHHHHHHHHHHHH
Confidence 344566677775421 4689999999999999999873 58999999999999999999999999
Q ss_pred HHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccC
Q 043456 189 EKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKE 268 (447)
Q Consensus 189 ~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E 268 (447)
.+.||++|.||.|++.++|++||||++|.++||.++.++++++|+||+|++++.+|++...||++||+|++++|+|||+|
T Consensus 336 ~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E 415 (686)
T PLN02908 336 WERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNE 415 (686)
T ss_pred HHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCC
Confidence 99999999999999999999999999999999999765689999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeee--
Q 043456 269 AGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAW-- 346 (447)
Q Consensus 269 ~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w-- 346 (447)
+++ .++||+|+|||+|+|+|+||+++| ++++++++++.+.++|+.||++|++ .++++.-+.- -++++|
T Consensus 416 ~~~---~l~Gl~RvReF~q~d~~if~~~~q--~~~e~~~~l~~~~~v~~~lG~~~~~-~ls~r~~~~~----g~~~~w~~ 485 (686)
T PLN02908 416 LSG---ALTGLTRVRRFQQDDAHIFCREDQ--IKDEVKGVLDFLDYVYEVFGFTYEL-KLSTRPEKYL----GDLETWDK 485 (686)
T ss_pred CCc---CCcCccccccEEEeeEEEEcCHHH--HHHHHHHHHHHHHHHHHHCCCcEEE-EEeCCccccC----CCHHHHHH
Confidence 973 489999999999999999999999 9999999999999999999999996 5777532100 012222
Q ss_pred ----------------e--cCCC-------------ceeeEEEecc-cchhh-hhhcccEEeccCCC-CCceeEEEeecc
Q 043456 347 ----------------F--PASQ-------------TYRELVSCSN-CTDYQ-SRRLEIRYGQKKSN-EQTKQYVHLLNS 392 (447)
Q Consensus 347 ----------------~--p~~~-------------~~~ev~s~sn-~~D~q-s~rl~i~y~~~~~~-~~~~~~~htlng 392 (447)
. |+.+ .+.+...|+. |.||+ +.||++.|.+.+.. ..+|..+|. +
T Consensus 486 ae~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~pv~ihr--a 563 (686)
T PLN02908 486 AEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHR--A 563 (686)
T ss_pred HHHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEECCCCCcCCCCEEEEe--C
Confidence 1 2222 2334556664 78997 78999999986532 246788996 3
Q ss_pred cccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 393 TLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 393 t~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
.+.+++|++++|+|++.+ .||.|++|.+ +.+||..
T Consensus 564 i~GsiERli~iL~e~~~g----~~p~wlsp~q--v~Vipv~ 598 (686)
T PLN02908 564 ILGSVERMFAILLEHYAG----KWPFWLSPRQ--AIVVPIS 598 (686)
T ss_pred ceEhHHHHHHHHHHHcCC----CCCCCCCCce--EEEEEEC
Confidence 344799999999998865 7999999988 8888876
No 24
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-44 Score=376.88 Aligned_cols=297 Identities=19% Similarity=0.293 Sum_probs=254.9
Q ss_pred CCCCceEEEeecCCCC-------------CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHH
Q 043456 121 DEANNAIVRTWGEKRT-------------EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF 187 (447)
Q Consensus 121 ~e~~~~~i~~~g~~~~-------------~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~ 187 (447)
|+++....+.||.... .++.+||++||++++||.|+. ..|+|+++|+|.|+.+.+.|++|++..
T Consensus 157 ~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~---~~~~G~~~~~pkG~~ir~~le~y~~~~ 233 (589)
T COG0441 157 DENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSP---EEGPGLPFWHPKGATIRNLLEDYVRTK 233 (589)
T ss_pred CCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeecc---ccCCcceEECCCcccHHHHHHHHHHHH
Confidence 4666777899998753 368999999999999999985 379999999999999999999999999
Q ss_pred HHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeecccccccc
Q 043456 188 LEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRK 267 (447)
Q Consensus 188 ~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~ 267 (447)
+.+.||++|.||.|+..++|+.+|||++|.++||.+...+++|+|+|++|+.++.+|++...||++||+|++++|.|||.
T Consensus 234 ~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~ 313 (589)
T COG0441 234 LRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRY 313 (589)
T ss_pred HHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecc
Confidence 99999999999999999999999999999999999887668999999999999999999999999999999999999999
Q ss_pred CccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCC--CC-----------
Q 043456 268 EAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGA--LN----------- 334 (447)
Q Consensus 268 E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~d--lg----------- 334 (447)
|.+ | .++||.|||.|+|.|+|+||+++| ..+++..+++....+++.||+....+.+++++ +|
T Consensus 314 E~S--G-al~GL~RvR~ftqdDaHifc~~dQ--i~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~k~ig~d~~W~~a~~~ 388 (589)
T COG0441 314 EKS--G-ALHGLMRVRGFTQDDAHIFCTPDQ--IKDEFKGILELILEVYKDFGFTDYEVKLSTRPKFIGSDEMWDKAEAA 388 (589)
T ss_pred cCc--c-hhhccccccceeecccceeccHHH--HHHHHHHHHHHHHHHHHhcCCceEEEEEecCCcccCChhhhHHHHHH
Confidence 986 7 899999999999999999999999 99999999999999999999984446788886 22
Q ss_pred -cccccccceeeeec-CCCce-------------eeEEEecc-cchhh-hhhcccEEeccCCCCCceeEEEeecccccch
Q 043456 335 -DAAAKKLDLEAWFP-ASQTY-------------RELVSCSN-CTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTAT 397 (447)
Q Consensus 335 -~~a~~~~diE~w~p-~~~~~-------------~ev~s~sn-~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ai 397 (447)
..+.....++.+.. +++.| +....|+. +.||+ ++||++.|.+.+++..+|+++|. +...++
T Consensus 389 l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHr--ai~GSi 466 (589)
T COG0441 389 LREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHR--AILGSI 466 (589)
T ss_pred HHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCCCCccCCEEEEe--ccchhH
Confidence 01112333333322 33322 22234554 67997 89999999998777778999997 555569
Q ss_pred hHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 398 ERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 398 ~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+|++++|+|++.+ .+|.||+|.| +++||..
T Consensus 467 ERfi~iLiE~~~G----~~P~WLaPvQ--v~VipV~ 496 (589)
T COG0441 467 ERFIGILLEHYAG----ALPTWLAPVQ--VRVIPVA 496 (589)
T ss_pred HHHHHHHHHhccC----CCcccCCccE--EEEEEeC
Confidence 9999999999888 8999999999 9999987
No 25
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-43 Score=382.47 Aligned_cols=292 Identities=17% Similarity=0.305 Sum_probs=239.0
Q ss_pred CCCceEEEeecCCCC-------------CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHH
Q 043456 122 EANNAIVRTWGEKRT-------------EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFL 188 (447)
Q Consensus 122 e~~~~~i~~~g~~~~-------------~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~ 188 (447)
+++..+.|.+|.... +.+.+||++||+++|||+|+. .++|+++|+|.|+.+.+.|++|+.+.+
T Consensus 213 ~~~~~l~Ri~g~a~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~----~~~G~~~~~p~g~~~~~~i~~~~~~~~ 288 (639)
T PRK12444 213 SNNQVLQRIYGVAFSSQKELEEYLHFVEEAAKRNHRKLGKELELFMFSE----EAPGMPFYLPKGQIIRNELEAFLREIQ 288 (639)
T ss_pred CCCcceEEEEEEecCCHHHHHHHHHHHHHhccCCHHHHHHHcCCccccc----ccCcceEEeeCHHHHHHHHHHHHHHHH
Confidence 445566677776531 367899999999999999986 368899999999999999999999999
Q ss_pred HHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccC
Q 043456 189 EKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKE 268 (447)
Q Consensus 189 ~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E 268 (447)
.+.||++|.||.|.+.++|++||||+.|+++||.++.++++|+|+||+|++++.+|++.+.||++||+|++++|+|||+|
T Consensus 289 ~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E 368 (639)
T PRK12444 289 KEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHE 368 (639)
T ss_pred HHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCC
Confidence 99999999999999999999999999999999955444678999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCC---CCccc--------
Q 043456 269 AGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGA---LNDAA-------- 337 (447)
Q Consensus 269 ~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~d---lg~~a-------- 337 (447)
++ | .++||+|+|||+|+|+|+||++++ ++++++.+++++.++|+.||++|++ .++++. +|...
T Consensus 369 ~~--~-~~~Gl~R~reF~q~d~~~f~~~~~--~~~e~~~~~~~~~~i~~~lgl~~~~-~~~~r~~~~~G~~e~~~~~~~~ 442 (639)
T PRK12444 369 FS--G-ALNGLLRVRTFCQDDAHLFVTPDQ--IEDEIKSVMAQIDYVYKTFGFEYEV-ELSTRPEDSMGDDELWEQAEAS 442 (639)
T ss_pred CC--c-CCcCcceeeeeEEccEEEECCHHH--HHHHHHHHHHHHHHHHHHcCCcEEE-EEECCccccCCCHHHHHHHHHH
Confidence 85 4 489999999999999999999988 9999999999999999999999984 566654 44311
Q ss_pred --------------------ccccceeeeecCCCceeeEEEec-ccchhh-hhhcccEEeccCCCCCceeEEEeeccccc
Q 043456 338 --------------------AKKLDLEAWFPASQTYRELVSCS-NCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLT 395 (447)
Q Consensus 338 --------------------~~~~diE~w~p~~~~~~ev~s~s-n~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ 395 (447)
++.--+|+-+...++ ..+.|+ .+.||+ +.||+++|.+.+++...|..+|+ ++.+
T Consensus 443 l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~--~~~~~~t~~~d~~~~~~f~l~~~~~~g~~~~P~i~~~--~~~g 518 (639)
T PRK12444 443 LENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALN--RSHQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVVIHR--AVLG 518 (639)
T ss_pred HHHHHHHcCCCceeccCCcccccceEEEEeecCCC--ChhcccceeeecccccccceEEECCCCCccccEEEEE--CCCC
Confidence 111122333222111 112333 246886 89999999987644445667775 4455
Q ss_pred chhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 396 ATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 396 ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+++|+|++|+|++.. .||.|++|.+ +.+||..
T Consensus 519 ~ieRli~~L~e~~~~----~~p~~~ap~q--V~Ii~~~ 550 (639)
T PRK12444 519 SLDRFLAILIEHFGG----AFPAWLAPVQ--VKVIPVS 550 (639)
T ss_pred CHHHHHHHHHHhcCC----CCCCccCCce--EEEEEcc
Confidence 899999999998743 8999999998 8888876
No 26
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-44 Score=356.66 Aligned_cols=278 Identities=19% Similarity=0.342 Sum_probs=242.7
Q ss_pred CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCC
Q 043456 137 EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQF 216 (447)
Q Consensus 137 ~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~ 216 (447)
+++.+||+.||++.+||-|.. -+||++||+|.|+++.+.|+.|++....++||++|.||.|.+..+|+.||||++|
T Consensus 159 Ea~~rdHRkig~~qeLfff~~----lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY 234 (560)
T KOG1637|consen 159 EAKKRDHRKIGKEQELFFFHE----LSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNY 234 (560)
T ss_pred hhhhhhhhhhhhhhhheeecc----CCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhh
Confidence 468899999999999999986 5699999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC
Q 043456 217 DEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296 (447)
Q Consensus 217 ~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~ 296 (447)
.++||.++...++|.|.|+.|+++|-||+.+..||++||+|++.+|..+|+|++ | .+.||.|||.|.+.|.|+||++
T Consensus 235 ~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~S--G-aLsGLTRvRrFqQDDaHIFCt~ 311 (560)
T KOG1637|consen 235 SENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEAS--G-ALSGLTRVRRFQQDDAHIFCTP 311 (560)
T ss_pred hhhceeeeechhhhccCccCCCccccccccCCccHhhCCccccCcceeeecccc--c-cccccceeeeecccCceEEecC
Confidence 999999987767899999999999999999999999999999999999999997 6 7899999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeec--------------------CCCc-ee-
Q 043456 297 NGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFP--------------------ASQT-YR- 354 (447)
Q Consensus 297 e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p--------------------~~~~-~~- 354 (447)
+| .++++...++..+.+|.-+|..|. ++++|+.- ..--|+|+|.. |.+. |+
T Consensus 312 ~Q--i~~Eik~~l~fl~~vY~~fgf~f~-l~lSTRPe----~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGP 384 (560)
T KOG1637|consen 312 DQ--VKEEIKGCLDFLDYVYGVFGFTFK-LNLSTRPE----KFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGP 384 (560)
T ss_pred cc--HHHHHHHHHHHHHHHHHhccccce-eEeccChH----HhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccc
Confidence 99 999999999999999999999998 46888753 23346666632 2222 11
Q ss_pred --eE---------EEe-cccchhh-hhhcccEEeccCCCCCceeEEEe-ecccccchhHHHHHHHHhcCCCCCcccCCcc
Q 043456 355 --EL---------VSC-SNCTDYQ-SRRLEIRYGQKKSNEQTKQYVHL-LNSTLTATERTICCILENYQKEDGVEVPEVL 420 (447)
Q Consensus 355 --ev---------~s~-sn~~D~q-s~rl~i~y~~~~~~~~~~~~~ht-lngt~~ai~Rll~allE~~q~~~gi~iP~~L 420 (447)
.| ..| +.+.||| +.||++.|.+.++.-.+|++||. +-|| ++|+++.|+|+|.+ .||-||
T Consensus 385 KIDi~l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGS---vERmiaiL~E~~~g----kwPFWl 457 (560)
T KOG1637|consen 385 KIDITLDDALGRKHQCATIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGS---VERMIAILLESYGG----KWPFWL 457 (560)
T ss_pred eeeeEhhhhcCcccceeeeeecccChhhcCceeecccccccchhhHHHHHhhh---HHHHHHHHHHHhCC----CCCeee
Confidence 11 112 3457998 89999999987654567889997 4455 99999999999999 899999
Q ss_pred cCcCCCceeecCCCCCC
Q 043456 421 QPFMGGKTFLPFKAKPA 437 (447)
Q Consensus 421 ~py~~g~~~i~~~~~~~ 437 (447)
+|++ ..+||+.+.+.
T Consensus 458 SPRq--~~vIpVse~~~ 472 (560)
T KOG1637|consen 458 SPRQ--AVVIPVSEGPL 472 (560)
T ss_pred ccce--EEEEECCCcch
Confidence 9999 88999985443
No 27
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=5.8e-42 Score=368.66 Aligned_cols=277 Identities=17% Similarity=0.251 Sum_probs=232.5
Q ss_pred CCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCc
Q 043456 138 PKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFD 217 (447)
Q Consensus 138 ~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~ 217 (447)
.+.+||++||+++|||||+++ +|+|+++|+|.|++++++|++++++.+.+.||++|.||.|.+.++|..||||+.|.
T Consensus 167 ~~~~dH~~l~~~~~l~~~~~~---~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~ 243 (563)
T TIGR00418 167 AKKRDHRKLGKELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYK 243 (563)
T ss_pred hhcCCHHHHHHhCCCcccCcc---cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccch
Confidence 467899999999999999864 68999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC
Q 043456 218 EELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296 (447)
Q Consensus 218 ~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~ 296 (447)
++||++.+. ++.++|+||+|.+++.+|++...||++||+|++++|+|||+|++ | .++||+|+|||+|+|+|+||.+
T Consensus 244 ~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~--g-~~~Gl~R~reF~q~~~~~~~~~ 320 (563)
T TIGR00418 244 ERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQS--G-ELHGLMRVRGFTQDDAHIFCTE 320 (563)
T ss_pred hhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCC--c-CCcCcccccceEEeeeEEEcCH
Confidence 999999875 57899999999999999999999999999999999999999975 5 6899999999999999999998
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCC----c------------------------------ccccccc
Q 043456 297 NGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALN----D------------------------------AAAKKLD 342 (447)
Q Consensus 297 e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg----~------------------------------~a~~~~d 342 (447)
++ ++.++.++++++.++|+.||++++.+.+++++.. . ..+.++|
T Consensus 321 ~~--~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~ 398 (563)
T TIGR00418 321 DQ--IKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKID 398 (563)
T ss_pred HH--HHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEE
Confidence 77 9999999999999999999999988889887431 0 0001123
Q ss_pred eeeeecCCCceeeEEEecccchhh-hhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCccc
Q 043456 343 LEAWFPASQTYRELVSCSNCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQ 421 (447)
Q Consensus 343 iE~w~p~~~~~~ev~s~sn~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~ 421 (447)
+|+ ....++..+++++ +.|+. +.|+++.|.+.+++...|..+|+ |.+++++|++++|+|++.. .||.|++
T Consensus 399 f~~-~~~lg~~~~~~t~--q~~~~~g~ryd~~~~~~~g~~~~p~ii~~--Gfa~gieRli~~l~e~~~~----~~p~~~~ 469 (563)
T TIGR00418 399 FAF-KDALGREWQCATV--QLDFELPERFDLTYVDEDNEEKRPVMIHR--AILGSIERFIAILLEKYAG----NFPLWLA 469 (563)
T ss_pred EEe-ecCCCCceeecee--eeccCCHhhcCCEEECCCCCEEeeEEEEe--eccCcHHHHHHHHHHhccC----CCCCcCC
Confidence 332 2222333344333 25675 89999999886432223444455 7777999999999998754 6898899
Q ss_pred CcCCCceeecCC
Q 043456 422 PFMGGKTFLPFK 433 (447)
Q Consensus 422 py~~g~~~i~~~ 433 (447)
|.. +.+||..
T Consensus 470 p~~--v~vi~~~ 479 (563)
T TIGR00418 470 PVQ--VVVIPVN 479 (563)
T ss_pred Cce--EEEEEcc
Confidence 988 7888876
No 28
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-42 Score=359.06 Aligned_cols=277 Identities=16% Similarity=0.258 Sum_probs=246.6
Q ss_pred CCCCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcC
Q 043456 135 RTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLA 214 (447)
Q Consensus 135 ~~~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~ 214 (447)
+.+++.-.| +|+.+.|++|. ..+|.|.|+|.|.++.+++.+.++++|.+.|.++|.+|.|++.++|+.+|||+
T Consensus 15 p~da~~~sh-~ll~rAg~i~~------~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~ 87 (500)
T COG0442 15 PADASEWSH-QLLLRAGMIRK------PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWE 87 (500)
T ss_pred cchhHHHHH-HHHHhcCceec------ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhh
Confidence 346666777 56689999997 35899999999999999999999999999999999999999999999999999
Q ss_pred CCcCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEE
Q 043456 215 QFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCI 293 (447)
Q Consensus 215 ~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f 293 (447)
.|+++||+++++ +++|+|+||||..++.|+++++.||+|||++||||.++||+|.+ +++||+|.|||.|.|.|+|
T Consensus 88 ~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~r----pr~gllR~REF~mkdaySf 163 (500)
T COG0442 88 GFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKR----PRFGLLRGREFLMKDAYSF 163 (500)
T ss_pred hcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEecccc----CCCCccchheeeecccccc
Confidence 999999999988 57899999999999999999999999999999999999999996 6789999999999999999
Q ss_pred ecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhc-cc
Q 043456 294 TSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRL-EI 372 (447)
Q Consensus 294 ~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl-~i 372 (447)
+.+.+ +++++|++++++|.+||..+|+.|+.+...++.+|+..+++| ++.||..+. .++.+|.+.++..++-+ .+
T Consensus 164 h~~~e-~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg~~S~eF--~~l~pd~ge-~qi~ts~~y~aN~e~a~~~~ 239 (500)
T COG0442 164 HADEE-DAEETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYSHEF--EALMPDGGE-DQIATSHHYGANFEKAFIDI 239 (500)
T ss_pred cCCHH-HHHHHHHHHHHHHHHHHHhCCceEEeecccCCCCCCccceEE--EEEccCCCc-cEEEEecchHHhHHHhccCC
Confidence 99854 699999999999999999999999999999999998877765 678886544 67888887777777788 88
Q ss_pred EEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecC
Q 043456 373 RYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPF 432 (447)
Q Consensus 373 ~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~ 432 (447)
+|.+.. .+...++||. |.+..+|.+++++-.|.++.|+.+|+.++|.+ +.++|.
T Consensus 240 ~~~~~~--~~~~~~v~t~--s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~q--V~~~~~ 293 (500)
T COG0442 240 KFEDEE--EGELEYVHTT--SYGISTRIIGAAILIHGDNEGLVLPPIVADIQ--VVIVPI 293 (500)
T ss_pred Cccccc--cccceEeccc--ceEEEeeeeeEEEEEecCCCCccCCchhccce--EEEEec
Confidence 888763 2567899984 55578899999999999988999999999998 777763
No 29
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-41 Score=367.48 Aligned_cols=277 Identities=17% Similarity=0.240 Sum_probs=233.7
Q ss_pred CCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCc
Q 043456 138 PKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFD 217 (447)
Q Consensus 138 ~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~ 217 (447)
.+.+||++|++++|||++++ .+|+|+++|+|.|+++.++|++++++.+.+.||++|.||.|.+.++|+.+|||+.|.
T Consensus 173 ~~~~dh~~l~~~~~l~~~~~---~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~ 249 (575)
T PRK12305 173 AKKRDHRKLGKELDLFSFPD---EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYK 249 (575)
T ss_pred hhhccHHHHHHhcCcccccc---ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccch
Confidence 46789999999999999986 579999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC
Q 043456 218 EELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296 (447)
Q Consensus 218 ~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~ 296 (447)
++||.+.+. ++.++|+||+|++++.++++...||++||+|++++|+|||+|.+ | +++||+|+|||+|+|+|+||.+
T Consensus 250 ~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~--~-~~~Gl~R~reF~q~~~~if~~~ 326 (575)
T PRK12305 250 ENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKS--G-VLHGLTRVRGFTQDDAHIFCTP 326 (575)
T ss_pred hhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCC--C-CCcCcccccCeEEcceEEEeCH
Confidence 999999544 57899999999999999999999999999999999999999985 4 6899999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCce-----------------------
Q 043456 297 NGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTY----------------------- 353 (447)
Q Consensus 297 e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~----------------------- 353 (447)
++ +.+++.++++.+.++|+.||++...+.++++++ ...-.+.|+|.++.+.+
T Consensus 327 ~~--~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~---~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~ 401 (575)
T PRK12305 327 DQ--IEDEILKVLDFVLELLKDFGFKDYYLELSTREP---EKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGP 401 (575)
T ss_pred HH--HHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCh---hhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccc
Confidence 88 999999999999999999999966688999874 11111344453221100
Q ss_pred ----------eeEEEec-ccchhh-hhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCccc
Q 043456 354 ----------RELVSCS-NCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQ 421 (447)
Q Consensus 354 ----------~ev~s~s-n~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~ 421 (447)
+....|+ .+.||+ +.||+++|.+.++....|.++|. |.+++++|++++|+|++.+ .||.|++
T Consensus 402 ~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~ih~--~~~G~~eRl~~~l~e~~~~----~~p~~~~ 475 (575)
T PRK12305 402 KIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHR--ALFGSIERFIGILTEHYAG----AFPFWLA 475 (575)
T ss_pred cEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCCccCceEEEc--cccccHHHHHHHHHHHhCC----CCCCCCC
Confidence 1111223 245775 78999999987544445667886 4445799999999999876 8999999
Q ss_pred CcCCCceeecCC
Q 043456 422 PFMGGKTFLPFK 433 (447)
Q Consensus 422 py~~g~~~i~~~ 433 (447)
|++ +.++|..
T Consensus 476 p~~--v~Ii~~~ 485 (575)
T PRK12305 476 PVQ--VVIIPVA 485 (575)
T ss_pred Ccc--EEEEEeC
Confidence 998 8889886
No 30
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.6e-38 Score=326.91 Aligned_cols=279 Identities=20% Similarity=0.236 Sum_probs=220.6
Q ss_pred HHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHH--CCCeEecCCccCcHHHHHHhCCcCCCcCccE
Q 043456 144 VELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEK--KSYTLLHTPFFMRKEVMAKCAQLAQFDEELY 221 (447)
Q Consensus 144 ~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~--~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf 221 (447)
.+++++.|++-.+...=-.=+|+|.|+|.|++|.+.|++|+++.+.. .||.+|.+|.|++.++|+.||||++|.+.||
T Consensus 8 ~~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~ 87 (456)
T PRK04173 8 VSLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLV 87 (456)
T ss_pred HHHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCcee
Confidence 46777777764433221234789999999999999999999999887 7999999999999999999999999999999
Q ss_pred EEecC----------------------------------------C------------------------Ccccccc-CC
Q 043456 222 KVTGE----------------------------------------G------------------------DDKYLIA-TA 236 (447)
Q Consensus 222 ~i~~~----------------------------------------~------------------------~~~~L~p-Ts 236 (447)
..... + ...||+| |+
T Consensus 88 ~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpeta 167 (456)
T PRK04173 88 ECKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETA 167 (456)
T ss_pred EeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccc
Confidence 86310 0 0234555 33
Q ss_pred ChhHHHHhhccccCCC-CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHH
Q 043456 237 EQPLCAYHIDDWIHPS-ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEF 315 (447)
Q Consensus 237 E~~l~~l~~~~~~s~~-~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i 315 (447)
+..+++ |+....||+ +||++++|+|+|||+|+++ .+||+|+|||++.|+|+||+|+| +.+++..+++.+..+
T Consensus 168 qg~~~~-f~~~~~syr~dLPlr~aq~g~~~RnE~s~----~~gL~RvReF~q~e~hiF~~peq--~~~e~~~~l~~~~~~ 240 (456)
T PRK04173 168 QGIFVN-FKNVLRTARKKLPFGIAQIGKSFRNEITP----RNFIFRTREFEQMELEFFVKPGT--DNEWFAYWIELRKNW 240 (456)
T ss_pred hhHHHH-HHHHHHhccccCCeeeeEEchhHhCccCC----CCCceeeceeeeeEEEEEECcCh--HHHHHHHHHHHHHHH
Confidence 333333 667788999 9999999999999999873 47999999999999999999999 999999999999999
Q ss_pred HHHcCCc---EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhh------hhcccEEeccCCCCCceeE
Q 043456 316 YQMLKIP---YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQS------RRLEIRYGQKKSNEQTKQY 386 (447)
Q Consensus 316 ~~~Lgl~---yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs------~rl~i~y~~~~~~~~~~~~ 386 (447)
|..||++ ++....+.+++...+...+|+|+++|....|.|+++|..++||+- .++++.|.+.. .+++...
T Consensus 241 l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~-~~~~~~~ 319 (456)
T PRK04173 241 LLDLGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDE-TTGEKYI 319 (456)
T ss_pred HHHcCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecC-CCCceee
Confidence 9999998 554444445676677789999999997667999999889999963 37999998421 1334455
Q ss_pred EEeecccccchhHHHHHHHHhc-CCC--------CCcccCCcccCcCCCceeecCC
Q 043456 387 VHLLNSTLTATERTICCILENY-QKE--------DGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 387 ~htlngt~~ai~Rll~allE~~-q~~--------~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+|+++-+ ++++|+++|||+.+ .+. .|+.||.||+|++ +.+||..
T Consensus 320 P~vi~~s-iGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~q--V~Iipi~ 372 (456)
T PRK04173 320 PYVIEPS-AGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVK--VAVLPLV 372 (456)
T ss_pred eEEEEec-ccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCE--EEEEEec
Confidence 6665444 57999888776654 431 1379999999999 8889876
No 31
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=4.7e-38 Score=301.56 Aligned_cols=222 Identities=20% Similarity=0.312 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-----CCccccccCCChhHHHHhhcc
Q 043456 173 GVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-----GDDKYLIATAEQPLCAYHIDD 247 (447)
Q Consensus 173 ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-----~~~~~L~pTsE~~l~~l~~~~ 247 (447)
|+++.++|++++.+.+.+.||++|.+|.|.+.++|..+||++.|.++||.+.+. ++.++|+||+|++++.++++.
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 678999999999999999999999999999999999999999999999999765 368999999999999999999
Q ss_pred ccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q 043456 248 WIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVA 327 (447)
Q Consensus 248 ~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~ 327 (447)
..+|++||++++++++|||+|.+++ +|+.|+|||+|.|+++||.+++ +.+.+.++++.+.++|+.||++|+++.
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~----~gl~R~reF~q~e~~~~~~~~~--~~~~~~e~~~~~~~~l~~lgl~~~i~~ 154 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGR----RGLMRVREFRQVEYVVFGEPEE--AEEERREWLELAEEIARELGLPVRVVV 154 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCC----CCChhheeeeeceEEEEcCHHH--HHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 9999999999999999999998732 7999999999999999999988 999999999999999999999999999
Q ss_pred ecCCCCC--------cccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhH
Q 043456 328 IVSGALN--------DAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATER 399 (447)
Q Consensus 328 ~~t~dlg--------~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~R 399 (447)
.+.++++ +.+..++|+|+|+|..+++.+|+++|+|.|+++++..+++.. ++...++|+++++ ++++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~eR 229 (235)
T cd00670 155 ADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDE----DGGGRAHTGCGGA-GGEER 229 (235)
T ss_pred ccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEcc----CCCceeeEEEeCc-cHHHH
Confidence 9999888 788899999999999788999999999999999988887543 2344689988777 79999
Q ss_pred HHHHHH
Q 043456 400 TICCIL 405 (447)
Q Consensus 400 ll~all 405 (447)
+|+|||
T Consensus 230 ~l~all 235 (235)
T cd00670 230 LVLALL 235 (235)
T ss_pred HHHHHC
Confidence 999986
No 32
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=100.00 E-value=1.3e-38 Score=292.42 Aligned_cols=169 Identities=30% Similarity=0.524 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHH-HCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCC-CccccccCCChhHHHHhhccccC-CC
Q 043456 176 LNQALINFGLDFLE-KKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEG-DDKYLIATAEQPLCAYHIDDWIH-PS 252 (447)
Q Consensus 176 l~~aL~~~~~~~~~-~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~-~~~~L~pTsE~~l~~l~~~~~~s-~~ 252 (447)
|+++|++++.+.+. +.||++|.+|.|++.++|++|||++.|.++||.+.+.+ +++||+||+|++++.++++...+ ++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 67999999999999 99999999999999999999999999999999998764 57999999999999999999999 99
Q ss_pred CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC-cEEEEEecCC
Q 043456 253 ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI-PYQVVAIVSG 331 (447)
Q Consensus 253 ~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl-~yr~v~~~t~ 331 (447)
+||++++++|+|||+|++ +++||+|+|||+|.|+|+||.+++ +.++++++++.+.++|+.||| ||+++..+++
T Consensus 81 ~LP~~~~~~g~~fR~E~~----~~~gl~R~reF~~~e~~~f~~~~~--~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~ 154 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEAR----PTRGLFRLREFTMDEMHIFCTPEQ--SEEEFEELLELYKEILEKLGLEPYRIVLSSSG 154 (173)
T ss_dssp GSSEEEEEEEEEEBSSSS----SBSTTTS-SEEEEEEEEEEESSHH--HHHHHHHHHHHHHHHHHHTTSGCEEEEEEETC
T ss_pred cCCeEEeecccccccccc----cccccceeeEeeeeceEEEeCCcc--cHHHHHHHHHHHHHHHHHcCCceEEEEEcCCC
Confidence 999999999999999983 789999999999999999999977 999999999999999999999 9999999999
Q ss_pred CCCcccccccceeeeecCC
Q 043456 332 ALNDAAAKKLDLEAWFPAS 350 (447)
Q Consensus 332 dlg~~a~~~~diE~w~p~~ 350 (447)
++++.+++++|+|+|+|++
T Consensus 155 ~~~~~~~~~~d~e~~~~~~ 173 (173)
T PF00587_consen 155 ELGAYAKYEFDIEAWFPAQ 173 (173)
T ss_dssp TSCTTSSEEEEEEEEETCC
T ss_pred ccCCCHHHcccHHHhCcCC
Confidence 9999999999999999985
No 33
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-35 Score=321.83 Aligned_cols=278 Identities=19% Similarity=0.299 Sum_probs=225.3
Q ss_pred CCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCc
Q 043456 138 PKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFD 217 (447)
Q Consensus 138 ~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~ 217 (447)
.+.++|.+|++++++++|+..+ +|+++|+|.|+++.++|++++.+.+.++||++|.||.|.+.++|..+|||+.+.
T Consensus 238 ~~~~~h~~l~~~~~~~~~~~~~----~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~ 313 (638)
T PRK00413 238 AKKRDHRKLGKELDLFHFQEEA----PGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYR 313 (638)
T ss_pred hccccHHHHHHhcCEEEecCCC----CcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhh
Confidence 4678999999999999998743 899999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC
Q 043456 218 EELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296 (447)
Q Consensus 218 ~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~ 296 (447)
++||.+.+. ++.++|+||+|++++.++++...||++||+|++++|+|||+|.+ | .++||.|+|||+|.|+++||.+
T Consensus 314 ~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~--~-~~~Gl~R~reF~q~~~~~~g~~ 390 (638)
T PRK00413 314 ENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPS--G-ALHGLMRVRGFTQDDAHIFCTP 390 (638)
T ss_pred hccceeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCC--C-CCcCcceeeeeEEeeEEEEcCH
Confidence 999998655 57899999999999999999999999999999999999999986 3 4789999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCC---CCCccccc--------------ccceeeeecCCC--------
Q 043456 297 NGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSG---ALNDAAAK--------------KLDLEAWFPASQ-------- 351 (447)
Q Consensus 297 e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~---dlg~~a~~--------------~~diE~w~p~~~-------- 351 (447)
++ +.+++.++++.+.++|+.||++-..+.++++ .+|..... .++.+. .++..
T Consensus 391 ~~--~~~e~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~~~~~~~~~ 467 (638)
T PRK00413 391 EQ--IEEEVKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEI-APGEGAFYGPKID 467 (638)
T ss_pred HH--HHHHHHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCcee-cCCccccccceEE
Confidence 88 8888899999999999999996333456663 23322210 001111 01111
Q ss_pred -----ceeeEEEec-ccchhh-hhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcC
Q 043456 352 -----TYRELVSCS-NCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFM 424 (447)
Q Consensus 352 -----~~~ev~s~s-n~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~ 424 (447)
..++...|+ .+.||+ ++||++.|.+..+....|.++|. |.+++++|+|++|+|++.+ .||.|++|.+
T Consensus 468 ~~~~~~~~~~~~l~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~i~~--~~~g~~eRli~~l~e~~~~----~~p~~~~p~~ 541 (638)
T PRK00413 468 FQLKDALGREWQCGTIQLDFNLPERFDLTYVGEDGEKHRPVMIHR--AILGSMERFIGILIEHYAG----AFPTWLAPVQ 541 (638)
T ss_pred EEeecCCCCeEEeccEeecccChhhcCCEEECCCCCccCcEEEEe--cceehHHHHHHHHHHHcCC----CCCcccCcce
Confidence 112222333 346785 79999999887533334567775 4555799999999999876 6999999988
Q ss_pred CCceeecCC
Q 043456 425 GGKTFLPFK 433 (447)
Q Consensus 425 ~g~~~i~~~ 433 (447)
+.+||..
T Consensus 542 --v~Ii~~~ 548 (638)
T PRK00413 542 --VVVLPIT 548 (638)
T ss_pred --EEEEEeC
Confidence 8888876
No 34
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.93 E-value=5.9e-25 Score=231.56 Aligned_cols=280 Identities=20% Similarity=0.226 Sum_probs=213.0
Q ss_pred HHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHH-HCCCeEecCCccCcHHHHHHhCCcCCCcCccEE
Q 043456 144 VELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLE-KKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYK 222 (447)
Q Consensus 144 ~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~-~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~ 222 (447)
.+|+++.|++......=-.-+|+|-|.|.|+.|.+++++.+++.+. ..|+.+|.+|.|.+..+|+.|||+++|.+-|-.
T Consensus 7 ~~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~ 86 (551)
T TIGR00389 7 MSLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVD 86 (551)
T ss_pred HHHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceee
Confidence 5788888888654211112478999999999999999999999875 789999999999999999999999999763332
Q ss_pred Ee------------------------------------------cC---------------------CCcccccc-CCCh
Q 043456 223 VT------------------------------------------GE---------------------GDDKYLIA-TAEQ 238 (447)
Q Consensus 223 i~------------------------------------------~~---------------------~~~~~L~p-TsE~ 238 (447)
.. +. +..-||+| ||.-
T Consensus 87 ~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQG 166 (551)
T TIGR00389 87 CKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQG 166 (551)
T ss_pred cCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchh
Confidence 10 00 12468888 8877
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHH---------------
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWD--------------- 303 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~--------------- 303 (447)
.++++-+-.-.+-..||+..+|+|.+||+|.+|+ .||+|+|||+|.|+-.||.|++ .+..
T Consensus 167 iFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr----~~l~R~REF~q~EiE~F~~p~~-~~~~~f~~~~~~~~~l~~~ 241 (551)
T TIGR00389 167 IFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPR----NGLFRVREFEQAEIEFFVHPLD-KSHPKFEEVKQDILPLLPR 241 (551)
T ss_pred hHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcc----cceEEeehhhhchhheecCccc-ccchhhHHHHHHHHhhccc
Confidence 7777665555677899999999999999999865 5999999999999999999963 1322
Q ss_pred -------------------HHHHHHHHHHHHHHHcCCc---EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecc
Q 043456 304 -------------------MHEEMIKNSEEFYQMLKIP---YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSN 361 (447)
Q Consensus 304 -------------------~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn 361 (447)
++.-++.....+|..+||+ .|--+-...+|...|..++|+|+..|. +|.|+..|.+
T Consensus 242 ~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~--Gw~E~~G~a~ 319 (551)
T TIGR00389 242 QMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPY--GWIECVGIAD 319 (551)
T ss_pred hhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCC--CcEEEEEecc
Confidence 4444455557899999996 555566778999999999999999975 6999999999
Q ss_pred cchhh----h--hhcccEEeccCC--------------------------------------------------------
Q 043456 362 CTDYQ----S--RRLEIRYGQKKS-------------------------------------------------------- 379 (447)
Q Consensus 362 ~~D~q----s--~rl~i~y~~~~~-------------------------------------------------------- 379 (447)
-+||- + ..-.+.|.++.+
T Consensus 320 R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (551)
T TIGR00389 320 RGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLV 399 (551)
T ss_pred ccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhh
Confidence 88883 1 112233332210
Q ss_pred --------CCCceeEEEeecccccchhHHHHHHHHhcCCC-------C-CcccCCcccCcCCCceeecCC
Q 043456 380 --------NEQTKQYVHLLNSTLTATERTICCILENYQKE-------D-GVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 380 --------~~~~~~~~htlngt~~ai~Rll~allE~~q~~-------~-gi~iP~~L~py~~g~~~i~~~ 433 (447)
-.++...||.+-. +++++|+++||+|+..++ . ++.||.+|+|+. +.++|..
T Consensus 400 ~~~~~~~~~~~~~~~P~VIep-S~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~k--V~VIpl~ 466 (551)
T TIGR00389 400 EIEMVTEVVHGEKYIPHVIEP-SFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIK--VAVLPLV 466 (551)
T ss_pred hheeeeeccCCcEecceEEEc-ccCHHHHHHHHHHhhCccccccccccceeccCCccCCce--EEEEEec
Confidence 1234456676644 467999999999986652 1 379999999999 8888876
No 35
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.6e-26 Score=227.75 Aligned_cols=274 Identities=17% Similarity=0.198 Sum_probs=239.8
Q ss_pred HHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccE
Q 043456 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELY 221 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf 221 (447)
..++..+-+++++-+ + +|.|++.|-+..+..++..|+..+..+.|-+.++.|.+|+..+++... |.++|.+++-
T Consensus 72 Y~qVitk~emieYyd---v--sGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvA 146 (551)
T KOG4163|consen 72 YSQVITKGEMIEYYD---V--SGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVA 146 (551)
T ss_pred HHHHhhhhhhheeec---c--cceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceE
Confidence 446667778888854 2 688999999999999999999999999999999999999999999988 9999999999
Q ss_pred EEecC-----CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE-Eec
Q 043456 222 KVTGE-----GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITS 295 (447)
Q Consensus 222 ~i~~~-----~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~-f~~ 295 (447)
.++-. .+....+||||.-+.-+|+.++.|||||||+|.|+..+-|.|.. .+..++|.|||.+.|.|+ |.+
T Consensus 147 wVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk----~p~PFlRtrEFLWQEGHTAfat 222 (551)
T KOG4163|consen 147 WVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFK----HPQPFLRTREFLWQEGHTAFAT 222 (551)
T ss_pred EEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeecc----CCCcchhhhHHHHhcCcchhCC
Confidence 88744 25689999999999999999999999999999999999999985 457899999999999995 666
Q ss_pred CCcchHHHHHHHHHHHHHHHHH-HcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEE
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQ-MLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRY 374 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~-~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y 374 (447)
+++ ++++.-+++++|..+|. .|-+|+.....+..+-.++...++.+|+++|..++-.+-.+.++.+...|+-|+|.|
T Consensus 223 ~~e--A~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ 300 (551)
T KOG4163|consen 223 PEE--AEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVF 300 (551)
T ss_pred HhH--HHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceee
Confidence 777 99999999999999997 588898877777777777788899999999999876665665666777899999999
Q ss_pred eccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 375 GQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 375 ~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
.++ .++...|+.. |+.| -.+|+|++++..|.++.|+.+|+.++|.+ +-+||..
T Consensus 301 ed~--~~g~~~fv~Q-nSWg-~sTRtiGvmiM~HgDdkGLvLPPrVA~vQ--vVvvP~g 353 (551)
T KOG4163|consen 301 EDP--GEGEKEFVWQ-NSWG-LSTRTIGVMIMTHGDDKGLVLPPRVAPVQ--VVVVPVG 353 (551)
T ss_pred cCC--Cccchhheee-cccc-cccceeeEEEEEecCCcccccCCcccceE--EEEEecc
Confidence 886 3456678886 6666 47899999999999999999999999999 8888875
No 36
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.92 E-value=2.2e-24 Score=221.71 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=200.5
Q ss_pred HHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHH--HCCCeEecCCccCcHHHHHHhCCcCCCcCc--
Q 043456 144 VELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLE--KKSYTLLHTPFFMRKEVMAKCAQLAQFDEE-- 219 (447)
Q Consensus 144 ~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~--~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~-- 219 (447)
..|+++-|++-.....=-.=+|+|-|-|.|+.|.+++++.++..+. +-+..++.+|.|++..+|+.|||.+.|.+-
T Consensus 10 ~~l~krrgf~~~s~eiYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV 89 (539)
T PRK14894 10 VALAKRRGFIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLV 89 (539)
T ss_pred HHHHHhCCCCccCccccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCcee
Confidence 5677888877543322222368899999999999999999999774 557789999999999999999999999551
Q ss_pred -------cEE---------------------------EecC---C--Ccccccc-CCChhHHHHhhccccCCCCcCeEee
Q 043456 220 -------LYK---------------------------VTGE---G--DDKYLIA-TAEQPLCAYHIDDWIHPSELPIRYA 259 (447)
Q Consensus 220 -------lf~---------------------------i~~~---~--~~~~L~p-TsE~~l~~l~~~~~~s~~~LPlrl~ 259 (447)
.|+ ..-. + ..-||+| |+.-.+.++-+-.-.+-..||+-++
T Consensus 90 ~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgia 169 (539)
T PRK14894 90 DCRDCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIA 169 (539)
T ss_pred ECCCCCccccCccceeeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEE
Confidence 221 1100 1 2479999 8888888876666677889999999
Q ss_pred ccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc---EEEEEecCCCCCcc
Q 043456 260 GYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP---YQVVAIVSGALNDA 336 (447)
Q Consensus 260 ~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dlg~~ 336 (447)
|+|.+||+|..++ .||+|+|||+|.|+-.||.|+. +.+++...+.....++..+||+ .|.-+-...+|...
T Consensus 170 QIGk~FRNEIsPr----~~l~R~REF~q~EiE~Fv~P~~--~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHY 243 (539)
T PRK14894 170 QVGKAFRNEINPR----NFLFRVREFEQMEIEYFVMPGT--DEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHY 243 (539)
T ss_pred eeeccccCccCCC----CceeecccchhheEEEEeCCCc--hHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhh
Confidence 9999999999864 5999999999999999999988 8899999999999999999997 77667788899999
Q ss_pred cccccceeeeecCCCceeeEEEecccchhh----hh---h--------------cccEEeccCCCCCceeEEEeeccccc
Q 043456 337 AAKKLDLEAWFPASQTYRELVSCSNCTDYQ----SR---R--------------LEIRYGQKKSNEQTKQYVHLLNSTLT 395 (447)
Q Consensus 337 a~~~~diE~w~p~~~~~~ev~s~sn~~D~q----s~---r--------------l~i~y~~~~~~~~~~~~~htlngt~~ 395 (447)
|..++|+|+-.|+- +|.|+..|.+-+||- ++ . -.+.|.+. ..++.-.+|.+ -...
T Consensus 244 a~~~~D~e~~~p~~-Gw~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~--~~~~~~iP~Vi-EpS~ 319 (539)
T PRK14894 244 SKRTFDLMYDYPNI-GVQEIEGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQ--ASGRHVVPYVI-EPSA 319 (539)
T ss_pred hhccEEEEEECCCC-CeEEEEEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEec--cCCcccCCcee-ecCc
Confidence 99999999998864 599999999999883 22 1 12233322 22333346754 4556
Q ss_pred chhHHHHHHHHh
Q 043456 396 ATERTICCILEN 407 (447)
Q Consensus 396 ai~Rll~allE~ 407 (447)
++.|++.|+|++
T Consensus 320 G~dR~~~a~l~~ 331 (539)
T PRK14894 320 GVGRCMLAVMCE 331 (539)
T ss_pred chhHHHHHHHHH
Confidence 899999999997
No 37
>PLN02734 glycyl-tRNA synthetase
Probab=99.92 E-value=4.9e-24 Score=227.79 Aligned_cols=283 Identities=16% Similarity=0.199 Sum_probs=212.2
Q ss_pred CHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHH-HCCCeEecCCccCcHHHHHHhCCcCCCcCcc
Q 043456 142 NHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLE-KKSYTLLHTPFFMRKEVMAKCAQLAQFDEEL 220 (447)
Q Consensus 142 ~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~-~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~l 220 (447)
.-..|+++-|++..+...=-.=+|+|=|-|.|+.|.+++++++++.+. ..+..+|.+|.|.+..+|+.|||.++|.+-|
T Consensus 77 ~l~~l~krRgF~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~m 156 (684)
T PLN02734 77 AVVNTLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLM 156 (684)
T ss_pred HHHHHHHhcCCccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCccccccee
Confidence 345777887776554322113368899999999999999999999774 5677899999999999999999999997511
Q ss_pred ---------EE--------------------------------------------------Ee----c------------
Q 043456 221 ---------YK--------------------------------------------------VT----G------------ 225 (447)
Q Consensus 221 ---------f~--------------------------------------------------i~----~------------ 225 (447)
|+ |. +
T Consensus 157 v~~~~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLM 236 (684)
T PLN02734 157 VKDEKTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLM 236 (684)
T ss_pred eEcCCCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccc
Confidence 11 00 0
Q ss_pred --------CCCcccccc-CCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC
Q 043456 226 --------EGDDKYLIA-TAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296 (447)
Q Consensus 226 --------~~~~~~L~p-TsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~ 296 (447)
++..-||+| ||.-.++++-+=.-..-..||+-.+|+|..||+|.+|+ .||+|+|||+|.|+-.||.|
T Consensus 237 F~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR----~gl~R~REF~qaEiE~Fv~P 312 (684)
T PLN02734 237 FQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPR----QGLLRVREFTLAEIEHFVDP 312 (684)
T ss_pred eeecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcc----cceeeechhhhhhhheecCc
Confidence 012468888 77777777655455567789999999999999999865 59999999999999999999
Q ss_pred Ccc---------------------------------hH-------HHHHHHHHHHHHHHHHHcCCc---EEEEEecCCCC
Q 043456 297 NGN---------------------------------DS-------WDMHEEMIKNSEEFYQMLKIP---YQVVAIVSGAL 333 (447)
Q Consensus 297 e~~---------------------------------~s-------~~~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dl 333 (447)
++. ++ ++++..++.....+|..+||+ .|--+--..+|
T Consensus 313 ~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~Em 392 (684)
T PLN02734 313 EDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEM 392 (684)
T ss_pred ccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHH
Confidence 741 01 458888999999999999996 55556667899
Q ss_pred CcccccccceeeeecCCCceeeEEEecccchhh----hh--hcccEEeccC-----------------------------
Q 043456 334 NDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQ----SR--RLEIRYGQKK----------------------------- 378 (447)
Q Consensus 334 g~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~q----s~--rl~i~y~~~~----------------------------- 378 (447)
...|..++|+|+..|. +|.|+..|.+-+||- ++ .-.+.|.++-
T Consensus 393 AHYA~dcwD~E~~~~~--GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v 470 (684)
T PLN02734 393 AHYAADCWDAEIECSY--GWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVV 470 (684)
T ss_pred hhhhhccEeEEEecCC--CcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHH
Confidence 9999999999999865 699999999888773 11 1122222210
Q ss_pred --------------------------------------------------CCCCceeEEEeecccccchhHHHHHHHHhc
Q 043456 379 --------------------------------------------------SNEQTKQYVHLLNSTLTATERTICCILENY 408 (447)
Q Consensus 379 --------------------------------------------------~~~~~~~~~htlngt~~ai~Rll~allE~~ 408 (447)
...++.-.||.+ -...||+|+|+|+||+.
T Consensus 471 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VI-EPS~GIgRIl~AilE~s 549 (684)
T PLN02734 471 VEALEAMNEKEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVI-EPSFGIGRIIYCLFEHS 549 (684)
T ss_pred HHHHHhcchhHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceE-ecCccHHHHHHHHHHHH
Confidence 001122245654 34457999999999986
Q ss_pred C-----CC--CCcccCCcccCcCCCceeecCC
Q 043456 409 Q-----KE--DGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 409 q-----~~--~gi~iP~~L~py~~g~~~i~~~ 433 (447)
. ++ .|+.||.||+||+ +.++|..
T Consensus 550 ~~~~~~De~R~~L~~Pp~IAP~q--VaIlPL~ 579 (684)
T PLN02734 550 FYTRPGDEQLNVFRFPPLVAPIK--CTVFPLV 579 (684)
T ss_pred hccccCCCcceEEecCcccCCcE--EEEEEec
Confidence 5 34 4699999999999 8889875
No 38
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.92 E-value=2.6e-25 Score=216.47 Aligned_cols=205 Identities=18% Similarity=0.174 Sum_probs=166.5
Q ss_pred HHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCC--CeEecCCccCcHHHHHHh-CCcCCCcCcc
Q 043456 144 VELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKS--YTLLHTPFFMRKEVMAKC-AQLAQFDEEL 220 (447)
Q Consensus 144 ~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G--~~~v~~P~l~~~~~~~~~-G~~~~~~~~l 220 (447)
.+|+++.|++......--..+|++.|+|.|+++.++|++++++.+.+.| |.+|.+|.|.+..++... |+++
T Consensus 2 ~~l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d------ 75 (254)
T cd00774 2 VELAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE------ 75 (254)
T ss_pred HhHHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC------
Confidence 4678888888654322223489999999999999999999999999985 999999999999655442 3331
Q ss_pred EEEecCCCccccccCCChhHHHHhhccccCC-CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcc
Q 043456 221 YKVTGEGDDKYLIATAEQPLCAYHIDDWIHP-SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGN 299 (447)
Q Consensus 221 f~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~-~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~ 299 (447)
+++++++|+|+.++.++..++....++ ++||++++|+++|||+|.+++ .||.|+|||+|.|+++||.+++
T Consensus 76 ----~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~----~gl~R~ReF~q~d~~~f~~~~~- 146 (254)
T cd00774 76 ----SGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPR----NGLFRVREFTQAEIEFFVDPEK- 146 (254)
T ss_pred ----CCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcc----cceeeeccchhhheeeeECCCC-
Confidence 224578999966655554455555444 599999999999999998632 7999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCc---EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhh
Q 043456 300 DSWDMHEEMIKNSEEFYQMLKIP---YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQ 366 (447)
Q Consensus 300 ~s~~~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~q 366 (447)
+.++|+.+++.+.++|+.+|++ ++.....+.+++..+...+|+++..| ..|.|+..+++.+|+.
T Consensus 147 -~~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~--~~w~e~~Gi~~~~~~~ 213 (254)
T cd00774 147 -SHPWFDYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFP--HGFLELEGIANRGDRF 213 (254)
T ss_pred -chHHHHHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHh--hhHHHHcCCCcchhHH
Confidence 9999999999999999999965 67777888899998899999877665 3688888888888773
No 39
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=99.89 E-value=1.1e-22 Score=172.76 Aligned_cols=108 Identities=35% Similarity=0.533 Sum_probs=99.3
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT 80 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~ 80 (447)
|||+++|| +|||.|++++++||.....||+|+++|++||+++.++++|+++||.+|++|++++++|++++++++++
T Consensus 1 MLDik~ir----~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~ 76 (108)
T PF02403_consen 1 MLDIKLIR----ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEV 76 (108)
T ss_dssp --SHHHHH----HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHH
T ss_pred CCCHHHHH----hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHH
Confidence 99999999 99999999999998655679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLV 112 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~ 112 (447)
+.+|++++.++.++..+++++..+++.|||+|
T Consensus 77 ~~lk~~i~~le~~~~~~e~~l~~~l~~iPNip 108 (108)
T PF02403_consen 77 KELKEEIKELEEQLKELEEELNELLLSIPNIP 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999997
No 40
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.6e-22 Score=207.11 Aligned_cols=283 Identities=22% Similarity=0.273 Sum_probs=213.7
Q ss_pred HHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHH--CCCeEecCCccCcHHHHHHhCCcCCCcCcc
Q 043456 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEK--KSYTLLHTPFFMRKEVMAKCAQLAQFDEEL 220 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~--~G~~~v~~P~l~~~~~~~~~G~~~~~~~~l 220 (447)
-.+|+++-|++-.....=-.-+|+|=|-|.|+.|.++|++.+++.+.. -|+.+|-+|.|.+.++|.+|||.++|.+-|
T Consensus 9 i~~l~KrRGF~~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDpl 88 (558)
T COG0423 9 IVELAKRRGFVFPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPL 88 (558)
T ss_pred HHHHHHhcccccccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCcccccccce
Confidence 357888888775443222234688999999999999999999997753 689999999999999999999999997621
Q ss_pred ------------------------------------------------------------EEEe--c-CCCcccccc-CC
Q 043456 221 ------------------------------------------------------------YKVT--G-EGDDKYLIA-TA 236 (447)
Q Consensus 221 ------------------------------------------------------------f~i~--~-~~~~~~L~p-Ts 236 (447)
|... . .+...||+| ||
T Consensus 89 v~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETA 168 (558)
T COG0423 89 VECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETA 168 (558)
T ss_pred eeccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeeccccc
Confidence 1100 0 134679999 99
Q ss_pred ChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCc------------------
Q 043456 237 EQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNG------------------ 298 (447)
Q Consensus 237 E~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~------------------ 298 (447)
.-.++++-+=.-..-+.||+-.+|+|..||+|.+++ .||+|+|||+|.|+-.||.|++
T Consensus 169 QGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr----~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~ 244 (558)
T COG0423 169 QGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPR----NGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLP 244 (558)
T ss_pred chhhhhhHHHHHHhccCCCeEEEeechhhccccCcc----cceeehhhhhhhheeeEECCCcccCcchhhhhhhhccccc
Confidence 888888765555677899999999999999999864 5999999999999999999965
Q ss_pred -chHHH---------------HHHHHHHHHHHHHHHcCCc---EEEEEecCCCCCcccccccceeeeecCCCceeeEEEe
Q 043456 299 -NDSWD---------------MHEEMIKNSEEFYQMLKIP---YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSC 359 (447)
Q Consensus 299 -~~s~~---------------~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~ 359 (447)
+..++ ++.-+......++..|||+ .|--+-...++...|+.++|+|+..|.. +|+|+..|
T Consensus 245 ~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~-gWiE~~Gi 323 (558)
T COG0423 245 REAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFG-GWIELVGI 323 (558)
T ss_pred HHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhhhcceeEEEecCCC-ceEEEEEe
Confidence 21222 2335566777888899997 5555677889999999999999998863 49999999
Q ss_pred cccchhh-hhhc--------------------------ccEEeccCC---------------------------------
Q 043456 360 SNCTDYQ-SRRL--------------------------EIRYGQKKS--------------------------------- 379 (447)
Q Consensus 360 sn~~D~q-s~rl--------------------------~i~y~~~~~--------------------------------- 379 (447)
++-+||- ++.. +.+|-++..
T Consensus 324 AdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i 403 (558)
T COG0423 324 ADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVII 403 (558)
T ss_pred ecccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhhe
Confidence 9999994 2111 111112110
Q ss_pred -----CCCceeEEEeecccccchhHHHHHHHHhc-CCCCC------cccCCcccCcCCCceeecCC
Q 043456 380 -----NEQTKQYVHLLNSTLTATERTICCILENY-QKEDG------VEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 380 -----~~~~~~~~htlngt~~ai~Rll~allE~~-q~~~g------i~iP~~L~py~~g~~~i~~~ 433 (447)
..++...||.+ -...++.|++.++|++. ..+.+ +++|.+|+|+. +.++|..
T Consensus 404 ~~~~~~~~e~~iP~VI-EPSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPik--vaVlPL~ 466 (558)
T COG0423 404 EEVEKVTGEKYIPHVI-EPSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIK--VAVLPLV 466 (558)
T ss_pred eeeeeccCceecCcee-ccCCCchHHHHHHHHHhhcccccccceeEEecCcccCceE--EEEEeee
Confidence 01133456765 34568999999999984 33322 59999999999 9999987
No 41
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.84 E-value=5.1e-20 Score=172.51 Aligned_cols=206 Identities=22% Similarity=0.312 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEec-CCCccccccCCChhHHHHhhccccCCCCcC
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG-EGDDKYLIATAEQPLCAYHIDDWIHPSELP 255 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~-~~~~~~L~pTsE~~l~~l~~~~~~s~~~LP 255 (447)
...+++.+++.+.+.||++|.+|.|++.+.+...|..+ +.++.+.+ .++.++|+||.+.++..+++... +++|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~ 75 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP---KDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLP 75 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH---hheeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccCC
Confidence 45778888999999999999999999999988877553 23333332 24678999999999999988776 7899
Q ss_pred eEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC--cEEEEEecCCCC
Q 043456 256 IRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI--PYQVVAIVSGAL 333 (447)
Q Consensus 256 lrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl--~yr~v~~~t~dl 333 (447)
++++++++|||.|.+. .++.|++||.|.+.+.++.+.+ ....+.++...++++++.||+ +++.+.....+.
T Consensus 76 ~~lfeig~vfr~e~~~-----~~~~~~~ef~~l~~~~~g~~~~--~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~ 148 (211)
T cd00768 76 LRLAEIGPAFRNEGGR-----RGLRRVREFTQLEGEVFGEDGE--EASEFEELIELTEELLRALGIKLDIVFVEKTPGEF 148 (211)
T ss_pred EEEEEEcceeecCCCc-----cccccceeEEEcCEEEEcCCch--hHHHHHHHHHHHHHHHHHcCCCcceEEEecCchhh
Confidence 9999999999998642 2367899999999999998765 445689999999999999997 466543333333
Q ss_pred C-cccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHH
Q 043456 334 N-DAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERT 400 (447)
Q Consensus 334 g-~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rl 400 (447)
. +...+++||.+|+|.. ++.|+++|+.+.+.++++++++|.++ .++..+||+++++ ++++|+
T Consensus 149 ~~~~~g~~~~i~~~~~~~-~~~eig~~g~~~~~~~~~~~l~~~~~---~~~~~~p~~~~~~-~~~~R~ 211 (211)
T cd00768 149 SPGGAGPGFEIEVDHPEG-RGLEIGSGGYRQDEQARAADLYFLDE---ALEYRYPPTIGFG-LGLERL 211 (211)
T ss_pred ccccCCceEEEEEEccCC-CeEEEeeceeecCchhHhhhhheecc---cccccCceeecCc-cCccCC
Confidence 3 2566889999999884 56899999999888899999999865 3455678888766 899985
No 42
>PRK07080 hypothetical protein; Validated
Probab=99.70 E-value=9.6e-16 Score=150.02 Aligned_cols=258 Identities=15% Similarity=0.121 Sum_probs=190.4
Q ss_pred CCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCc
Q 043456 140 LKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEE 219 (447)
Q Consensus 140 ~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~ 219 (447)
..+-++=.-..||+- .. ...|.|-..+.=-.+..+|..++...-...|+.++..|-+++.+.|+++|++..|-+-
T Consensus 18 ~~~~~~~l~~~g~~~-~~----g~~g~ygrs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l 92 (317)
T PRK07080 18 RNDFRDELFDAGLLI-PT----GVDGLYGRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQL 92 (317)
T ss_pred hhhHHHHHHhcCcee-cc----CCCccccccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCccc
Confidence 344454445667653 22 3356676665555555555554444333455999999999999999999999999888
Q ss_pred cEEEec-------------------------CCCccccccCCChhHHHHhhcc-ccCCCCcCeEeeccccccccCccCCC
Q 043456 220 LYKVTG-------------------------EGDDKYLIATAEQPLCAYHIDD-WIHPSELPIRYAGYSSCFRKEAGSHG 273 (447)
Q Consensus 220 lf~i~~-------------------------~~~~~~L~pTsE~~l~~l~~~~-~~s~~~LPlrl~~~s~~fR~E~~~~G 273 (447)
++.+.. +..+++|.|++|.|+.-++.++ .+.... ..+--.|+|||+|-+
T Consensus 93 ~~~V~~~~g~~~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g--~~~dv~g~CFR~E~s--- 167 (317)
T PRK07080 93 AGTVHSFCGNEAEHRRLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADG--RLVDVASYCFRHEPS--- 167 (317)
T ss_pred ceeecCCCCCCHHHHHHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCC--cEEEeeeeeeccCCC---
Confidence 887631 0136899999999999998876 444222 666777899999963
Q ss_pred CCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccc---------ccccee
Q 043456 274 RDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAA---------KKLDLE 344 (447)
Q Consensus 274 ~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~---------~~~diE 344 (447)
+++-|+.+|.|.|.+.+-++++ +.+..+..++....+.+.|||++++..++ ....+... ..+-.|
T Consensus 168 ---~dl~Rl~~F~mrE~V~iGt~e~--v~~~r~~w~e~~~~l~~~LgL~~~ve~An-DPFF~~~gk~~a~~Qr~~~lKfE 241 (317)
T PRK07080 168 ---LDPARMQLFRMREYVRIGTPEQ--IVAFRQSWIERGTAMADALGLPVEIDLAN-DPFFGRGGKIVAASQREQNLKFE 241 (317)
T ss_pred ---CCcHHHhheeeeEEEEecCHHH--HHHHHHHHHHHHHHHHHHhCCceeEeecC-CccccccchhhhhhhhhccceeE
Confidence 4699999999999999999988 88888999999999999999999975443 22221111 233457
Q ss_pred eeec--CCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccC
Q 043456 345 AWFP--ASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQP 422 (447)
Q Consensus 345 ~w~p--~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~p 422 (447)
.|.| +.....-|+|++...|+.+.+++|+..+ + ..+|| .|.|.+++|+..||+.+|.-+. -.||+..+.
T Consensus 242 l~vpi~~~~~~tA~~S~NyH~dhFg~~f~I~~~~-----g--~~ahT-gCvGFGlER~a~All~~hG~d~-~~WP~~Vr~ 312 (317)
T PRK07080 242 LLIPIYSDAPPTACMSFNYHMDHFGLTWGIRTAD-----G--AVAHT-GCVGFGLERLALALFRHHGLDP-AAWPAAVRD 312 (317)
T ss_pred EEEecCCCCCceEEEEEehhhhccccccCcccCC-----C--CEeEE-eeeecCHHHHHHHHHHHhCCCh-hhccHHHHH
Confidence 7765 4456778889988899999999997754 2 36898 5999999999999999998542 257776553
No 43
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.59 E-value=1.6e-14 Score=141.34 Aligned_cols=146 Identities=19% Similarity=0.232 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHHHHhhccccCCC
Q 043456 174 VRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPS 252 (447)
Q Consensus 174 a~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~ 252 (447)
+++.+.|++.+.+.+.++||++|.||.+.+.++|..++ ++...+++|++.+. ++.++|+|+.+++++.+++....+ .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-L 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-C
Confidence 46788999999999999999999999999999998887 66778899999765 578999999999999999987766 7
Q ss_pred CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCC
Q 043456 253 ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGA 332 (447)
Q Consensus 253 ~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~d 332 (447)
++|+|++.+++|||+|.++ ..|.|||++.+...|+.+.. .. -.+++..+.++++.||++-..+.++...
T Consensus 80 ~~p~k~~y~g~vfR~e~~~-------~g~~re~~Q~g~Eiig~~~~--~~--daE~i~l~~~~l~~lg~~~~~i~l~~~~ 148 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQ-------KGRYREFYQVGVEIIGSDSP--LA--DAEVIALAVEILEALGLKDFQIKINHRG 148 (261)
T ss_pred CCCeEEEEEcCEEecCCCC-------CCCccceEEeceeeeCCCCh--HH--HHHHHHHHHHHHHHcCCCceEEEECCHH
Confidence 8999999999999999753 33889999999988888543 22 2678999999999999874334555433
No 44
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.55 E-value=7.2e-14 Score=146.06 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=134.1
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-C-CcCCCcCccEEEecC-CCccccccCCChhH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-A-QLAQFDEELYKVTGE-GDDKYLIATAEQPL 240 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G-~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l 240 (447)
.|+-=|+|..+...+.+++.+.+.+.++||.+|.||.+=..++|... | +++...++||.+.+. ++.++|+|...+|+
T Consensus 8 ~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~i 87 (430)
T CHL00201 8 RGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGI 87 (430)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHH
Confidence 56777899999999999999999999999999999999999999875 6 777778899999765 57899999999999
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
+-++.....++..+|+|++.+++|||+|.... | |.|||+|.+...|+.+.. ..+ .+++..+.++|+.||
T Consensus 88 aR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~-----G--R~Ref~Q~g~EiiG~~~~--~aD--~Evi~l~~~~l~~lG 156 (430)
T CHL00201 88 VRAFIENKMDYHSNLQRLWYSGPMFRYERPQS-----G--RQRQFHQLGIEFIGSIDA--RAD--TEVIHLAMQIFNELQ 156 (430)
T ss_pred HHHHHHccccccCCCeEEEEEcceecCCCCcC-----C--ccceeEEeceEEECCCCh--hhH--HHHHHHHHHHHHHcC
Confidence 99987777788899999999999999997533 4 999999999999998866 333 578999999999999
Q ss_pred Cc-EEEEEecC
Q 043456 321 IP-YQVVAIVS 330 (447)
Q Consensus 321 l~-yr~v~~~t 330 (447)
++ |. +.+..
T Consensus 157 l~~~~-i~l~~ 166 (430)
T CHL00201 157 VKNLI-LDINS 166 (430)
T ss_pred CCceE-EEECC
Confidence 97 55 44443
No 45
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=8.6e-14 Score=144.70 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=126.1
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CCcC-CCcCccEEEecC-CCccccccCCCh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQLA-QFDEELYKVTGE-GDDKYLIATAEQ 238 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~~~-~~~~~lf~i~~~-~~~~~L~pTsE~ 238 (447)
...|+..|+|.++.+.+.+++.+.+.+.++||++|.+|.+-+.++|... |++. .+.++||++.+. ++.++|+|...+
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~ 85 (412)
T PRK00037 6 APRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTA 85 (412)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcH
Confidence 3478899999999999999999999999999999999999999999775 6663 457899998765 689999999999
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM 318 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~ 318 (447)
+++.+++.... +|+|+|+++++||+|.... | |.|||+|.+.++|+.++. .++ .+++..+.++|+.
T Consensus 86 ~~ar~~~~~~~----~p~r~~~~g~vfR~e~~~~-----g--r~ref~Q~g~ei~g~~~~-~~d---~E~i~~~~~~l~~ 150 (412)
T PRK00037 86 PVVRAVIEHKL----QPFKLYYIGPMFRYERPQK-----G--RYRQFHQFGVEVIGSDSP-LAD---AEVIALAADILKA 150 (412)
T ss_pred HHHHHHHhCCC----CCeEEEEEcCccccCCCCC-----C--cccceEEcCeeeeCCCCc-chh---HHHHHHHHHHHHH
Confidence 99998876422 9999999999999996422 3 899999999999998753 233 3468888999999
Q ss_pred cCCcEEEE
Q 043456 319 LKIPYQVV 326 (447)
Q Consensus 319 Lgl~yr~v 326 (447)
||++...+
T Consensus 151 lg~~~~~~ 158 (412)
T PRK00037 151 LGLKGLKL 158 (412)
T ss_pred cCCCceee
Confidence 99985433
No 46
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.48 E-value=5.5e-13 Score=138.04 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=129.3
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC--CcCCCcCccEEEecC-CCccccccCCChhH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA--QLAQFDEELYKVTGE-GDDKYLIATAEQPL 240 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G--~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l 240 (447)
.|+..|+|.++.+.+.+++.+.+.+.++||++|.+|.+-..++|...+ +.+.+.++||.+.+. ++.++|+|....++
T Consensus 4 ~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~i 83 (397)
T TIGR00442 4 RGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPV 83 (397)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHH
Confidence 578899999999999999999999999999999999999999997764 233466899998764 67899999999999
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
+.+++... ++.++|+|++++++|||+|.... | |.+||+|.+..+|+.++. . .. .+++..+.++|+.||
T Consensus 84 aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~-----g--r~ref~Q~g~eiig~~~~--~-~d-~E~i~l~~e~l~~lg 151 (397)
T TIGR00442 84 ARAVIENK-LLLPKPFKLYYIGPMFRYERPQK-----G--RYRQFHQFGVEVIGSDSP--L-AD-AEIIALAAEILKELG 151 (397)
T ss_pred HHHHHhcc-cccCCCeEEEEEcCeecCCCCCC-----C--cccceEEcCeeeeCCCCH--H-HH-HHHHHHHHHHHHHcC
Confidence 99887653 35789999999999999996422 3 899999999999988754 2 22 468999999999999
Q ss_pred Cc-EEEEEecCCC
Q 043456 321 IP-YQVVAIVSGA 332 (447)
Q Consensus 321 l~-yr~v~~~t~d 332 (447)
++ +++ .++...
T Consensus 152 ~~~~~i-~i~~~~ 163 (397)
T TIGR00442 152 IKDFTL-EINSLG 163 (397)
T ss_pred CCceEE-EecCcc
Confidence 97 554 454444
No 47
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.9e-12 Score=131.07 Aligned_cols=131 Identities=17% Similarity=0.254 Sum_probs=110.0
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHH-HHCCCeEecCCccCcHHHHHHhCCcCCCcCccEE--------------------
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFL-EKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYK-------------------- 222 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~-~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~-------------------- 222 (447)
+|.|-+-|.|..|..+++++++..+ .+-+..+|-.|.|.+..+++.|||.++|.+-|-+
T Consensus 36 sGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvkD~ktGecfRADHLvk~~~~r 115 (599)
T KOG2298|consen 36 SGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVKDEKTGECFRADHLVKDAEER 115 (599)
T ss_pred ccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHHhcCccccceehhhHHHHHHHHh
Confidence 6789999999999999999999965 5789999999999999999999999998764421
Q ss_pred ------------------------------------Eec-----------------------C-CCcccccc-CCChhHH
Q 043456 223 ------------------------------------VTG-----------------------E-GDDKYLIA-TAEQPLC 241 (447)
Q Consensus 223 ------------------------------------i~~-----------------------~-~~~~~L~p-TsE~~l~ 241 (447)
|.+ . +-.-||+| |+.-.+.
T Consensus 116 l~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~Fl 195 (599)
T KOG2298|consen 116 LKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQFL 195 (599)
T ss_pred hhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccccccc
Confidence 000 0 12358999 8888888
Q ss_pred HHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCc
Q 043456 242 AYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNG 298 (447)
Q Consensus 242 ~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~ 298 (447)
++-+=.-+.-..||+--+|+|..||+|.+++ .||+|||+|+|.|+..|+.|+.
T Consensus 196 NFkrlle~N~~KlPFA~AqiG~~fRNEISpR----sGLlRvrEF~maEIEHFvdP~~ 248 (599)
T KOG2298|consen 196 NFKRLLEFNQGKLPFASAQIGKSFRNEISPR----SGLLRVREFTMAEIEHFVDPLL 248 (599)
T ss_pred cHHHHHHhcCCCCcchHHHhchHhhhccCcc----cCceeEEEeehHHhhccCCCCC
Confidence 8766666788899999999999999999865 5999999999999999998754
No 48
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.31 E-value=1.2e-11 Score=126.84 Aligned_cols=134 Identities=18% Similarity=0.321 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcC--CCcCccEEEecCCCccccccCCChhHHHHhhcccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLA--QFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~--~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
.+..+++++.++ +...||++|.+|.|++.+.++..|++. .+.+++|.++ +.++|+|+..++++.+++.. .
T Consensus 205 ~~s~Le~aIR~~----f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id---eel~LRpsLtPsLlr~la~n-~ 276 (417)
T PRK09537 205 YLGKLERDITKF----FVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPGLYNYLRKL-D 276 (417)
T ss_pred HHHHHHHHHHHH----HHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC---CceEehhhhHHHHHHHHHhh-h
Confidence 456666666655 455899999999999999999998763 4557888874 37899999999988877543 2
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVV 326 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v 326 (447)
.+.++|+|++++|+|||.|.. | --+++||+|.+...+ . +...|.++...++++|+.|||+|++.
T Consensus 277 k~~~~P~RIFEIG~VFR~E~~--g-----~~hlrEf~Ql~~~ii----G--s~~~f~dL~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 277 RILPDPIKIFEIGPCYRKESD--G-----KEHLEEFTMVNFCQM----G--SGCTRENLENIIDDFLKHLGIDYEII 340 (417)
T ss_pred hcccCCeeEEEEeceEecCCC--C-----CCCcceEEEEEEEEe----C--CchHHHHHHHHHHHHHHHCCCCcEEe
Confidence 345789999999999999963 3 227899998877654 2 33457888999999999999999876
No 49
>PLN02530 histidine-tRNA ligase
Probab=99.29 E-value=3.1e-11 Score=128.19 Aligned_cols=152 Identities=15% Similarity=0.246 Sum_probs=125.3
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CCcCCCcCccEEEecC-CCccccccCCChhHH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQLAQFDEELYKVTGE-GDDKYLIATAEQPLC 241 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~ 241 (447)
.|+.-|+|..+.+.+.|++.+.+.+.++||++|.||.|-..+++... |. ...++||.+.|. |+.+.|+|-.-.|++
T Consensus 74 ~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~g~~l~LRpD~T~~ia 151 (487)
T PLN02530 74 KGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKGGRRVALRPELTPSLA 151 (487)
T ss_pred CCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCCCCEEecCCCCcHHHH
Confidence 67888999999999999999999999999999999999999999764 42 355789998765 678999998889999
Q ss_pred HHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC
Q 043456 242 AYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI 321 (447)
Q Consensus 242 ~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl 321 (447)
-++.....+. .+|+|+|.+++|||+|.... | |.|||.+..+-.|..+.. .++ .+++..+.++|+.||+
T Consensus 152 R~~~~~~~~~-~~P~r~~y~g~vfR~e~~q~-----g--r~REf~Q~giEiiG~~~~-~aD---aEvi~l~~~~l~~lgl 219 (487)
T PLN02530 152 RLVLQKGKSL-SLPLKWFAIGQCWRYERMTR-----G--RRREHYQWNMDIIGVPGV-EAE---AELLAAIVTFFKRVGI 219 (487)
T ss_pred HHHHhccccc-CCCeEEEEEcCEEcCcCCCC-----C--CccceEEcCeeEeCCCCc-chh---HHHHHHHHHHHHHcCC
Confidence 9887754433 69999999999999997433 4 899999999988887644 232 4678888999999999
Q ss_pred c---EEEEEecC
Q 043456 322 P---YQVVAIVS 330 (447)
Q Consensus 322 ~---yr~v~~~t 330 (447)
+ |.+ .++.
T Consensus 220 ~~~~~~i-~i~~ 230 (487)
T PLN02530 220 TSSDVGI-KVSS 230 (487)
T ss_pred CCCceEE-EEcC
Confidence 5 654 4443
No 50
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.28 E-value=4.1e-11 Score=120.41 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=121.4
Q ss_pred eccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHHHHhhcc
Q 043456 169 LKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDD 247 (447)
Q Consensus 169 l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~ 247 (447)
++|..+.+.+.+++.+.+.+.++||.+|.||.+-+.+++...++ ...++||.+.+. |+.++|+|-..+|++.+++..
T Consensus 3 ~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~ 80 (314)
T TIGR00443 3 LLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTR 80 (314)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCCCCEEeecCcCcHHHHHHHHHh
Confidence 57899999999999999999999999999999999999988776 367899998765 678999998888898888765
Q ss_pred ccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-EEE
Q 043456 248 WIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-YQV 325 (447)
Q Consensus 248 ~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr~ 325 (447)
.. ...+|+|++.++++||+|.. |.-|.|||++....+|..+.. ..+ .+++..+.++++.||+. +.+
T Consensus 81 ~~-~~~~p~r~~y~g~VfR~~~~-------~~gr~re~~Q~g~Eiig~~~~--~ad--aEvi~l~~~~l~~lg~~~~~i 147 (314)
T TIGR00443 81 LR-DRPLPLRLCYAGNVFRTNES-------GAGRSREFTQAGVELIGAGGP--AAD--AEVIALLIEALKALGLKDFKI 147 (314)
T ss_pred cc-cCCCCeEEEEeceEeecCCC-------cCCCcccccccceEEeCCCCc--hhH--HHHHHHHHHHHHHcCCCCeEE
Confidence 43 56789999999999999974 344999999999999987765 333 58899999999999995 543
No 51
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.24 E-value=9.2e-11 Score=122.59 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=123.8
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CCcCCCcCccEEEecC-CCccccccCCChhHH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQLAQFDEELYKVTGE-GDDKYLIATAEQPLC 241 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~ 241 (447)
.|+.-|+|..+.+.+.+++-+.+.+.++||.+|.||.+-..++|... |..+...++||.+.|. |+.++|+|-...|++
T Consensus 8 ~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~ia 87 (423)
T PRK12420 8 KGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFA 87 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHH
Confidence 57788999999999999999999999999999999999999999653 5555566789998775 578999999999999
Q ss_pred HHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC
Q 043456 242 AYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI 321 (447)
Q Consensus 242 ~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl 321 (447)
-+++... ...+|+|+|.+++|||.|.... | |.|||.+...-.|..+.. .++ .+++..+.++++.||+
T Consensus 88 R~va~~~--~~~~p~r~~y~g~vfR~~~~~~-----g--r~rE~~Q~g~EiiG~~~~-~ad---aEvi~la~~~l~~lg~ 154 (423)
T PRK12420 88 KVVAMNP--NIRLPFKRYEIGKVFRDGPIKQ-----G--RFREFIQCDVDIVGVESV-MAE---AELMSMAFELFRRLNL 154 (423)
T ss_pred HHHHhCc--CCCCCeeEEEEcceECCCCCCC-----C--ccceeEECCeeeECCCCC-ccc---HHHHHHHHHHHHHCCC
Confidence 8887652 3468999999999999986422 3 899999988877775533 132 5788888999999999
Q ss_pred cEEEE
Q 043456 322 PYQVV 326 (447)
Q Consensus 322 ~yr~v 326 (447)
+|.+.
T Consensus 155 ~~~i~ 159 (423)
T PRK12420 155 EVTIQ 159 (423)
T ss_pred CEEEE
Confidence 87643
No 52
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.13 E-value=6.8e-10 Score=113.97 Aligned_cols=133 Identities=16% Similarity=0.262 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcC--CCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCc
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLA--QFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~--~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
...|.+.+++.+...||++|.+|.|.+.+.++..++.+ ...+++|.++ +.++|+|+...++..++..... ...+
T Consensus 242 ~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e---e~lvLRPdLTPsLaR~La~N~~-~l~~ 317 (453)
T TIGR02367 242 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPNLYNYLRKLDR-ALPD 317 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec---CceEecccCHHHHHHHHHHhhh-hccC
Confidence 45677778888899999999999999988888877653 3556888874 3689999988888876654311 2368
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVV 326 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v 326 (447)
|+|++++|.|||.|....| |++||++++..++..+.. |.++.....++|+.||+.|.+.
T Consensus 318 PqKIFEIGkVFR~E~~~~t-------hlREF~QL~~eIaG~~at------faDlealL~e~Lr~LGIdfeit 376 (453)
T TIGR02367 318 PIKIFEIGPCYRKESDGKE-------HLEEFTMLNFCQMGSGCT------RENLEAIIKDFLDHLEIDFEIV 376 (453)
T ss_pred CeeEEEEcCeEecCCCCCC-------CcCeEEEEEEEEECCCCC------HHHHHHHHHHHHHHCCCceEEe
Confidence 9999999999999975322 799999999887765433 4566678899999999998874
No 53
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.5e-09 Score=112.32 Aligned_cols=158 Identities=19% Similarity=0.271 Sum_probs=124.2
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHH-hCCcCC-CcCccEEEecC-CCccccccCCChhH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQ-FDEELYKVTGE-GDDKYLIATAEQPL 240 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~-~~~~lf~i~~~-~~~~~L~pTsE~~l 240 (447)
.|+.=|+|.=+.+++.+++.+.+.+.++||.+|.||.+=..+++.+ +|--.+ -..+||.+.|. ++.+.|+|-.-.|+
T Consensus 8 rG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv 87 (429)
T COG0124 8 RGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPV 87 (429)
T ss_pred CCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHH
Confidence 5777799999999999999999999999999999999999999875 443222 35799999886 68999999777899
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
+-++........ .|+|+|.+++|||+|.-..| |.|||.+.+.=+|-.+.- ..=.+++.++.++|+.||
T Consensus 88 ~R~~~en~~~~~-~p~k~yy~g~vfRyErPQ~G-------R~RqF~Q~g~E~iG~~~~----~~DAEvi~l~~~~l~~lG 155 (429)
T COG0124 88 ARAVAENKLDLP-KPLKLYYFGPVFRYERPQKG-------RYRQFYQFGVEVIGSDSP----DADAEVIALAVEILEALG 155 (429)
T ss_pred HHHHHhcccccc-CCeeEEEecceecCCCCCCC-------CceeeEEcCeEEeCCCCc----ccCHHHHHHHHHHHHHcC
Confidence 998887766555 89999999999999975444 899999966555544321 112578889999999999
Q ss_pred Cc-EEEEEecCCCC
Q 043456 321 IP-YQVVAIVSGAL 333 (447)
Q Consensus 321 l~-yr~v~~~t~dl 333 (447)
|. |++..-+.+.+
T Consensus 156 i~~~~l~iN~~g~l 169 (429)
T COG0124 156 IGGFTLEINSRGIL 169 (429)
T ss_pred CCcEEEEEcCcccH
Confidence 98 66544333443
No 54
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.90 E-value=1.9e-08 Score=104.12 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=118.9
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLC 241 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~ 241 (447)
.|+--++|.-+...+.+.+-+.+.+.++||.+|.||.+-..+++...+- +...++||.+.+. ++.++|+|-.-.|++
T Consensus 7 ~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g-~~~~~~~~~f~d~~~g~~l~LRpD~T~~ia 85 (391)
T PRK12292 7 EGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG-AILDLRTFKLVDQLSGRTLGLRPDMTAQIA 85 (391)
T ss_pred CcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCC-ccchhhhEEEeecCCCCEEEECCCCcHHHH
Confidence 5677788999999999999999999999999999999999888854421 2234689998765 678999998888998
Q ss_pred HHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC
Q 043456 242 AYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI 321 (447)
Q Consensus 242 ~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl 321 (447)
-+++... .....|+|+|.+++|||+|....| |.|||.+...-+|..+.. .++ .+++..+.++++.||+
T Consensus 86 R~~a~~~-~~~~~p~r~~y~g~vfR~~~~~~g-------r~ref~Q~g~EiiG~~~~-~aD---aEvi~l~~~~l~~lgl 153 (391)
T PRK12292 86 RIAATRL-ANRPGPLRLCYAGNVFRAQERGLG-------RSREFLQSGVELIGDAGL-EAD---AEVILLLLEALKALGL 153 (391)
T ss_pred HHHHHhc-cCCCCCeEEEeeceeeecCCCcCC-------CccchhccceEEeCCCCc-hHH---HHHHHHHHHHHHHcCC
Confidence 8877543 234679999999999999864333 899999988777775533 122 4889999999999999
Q ss_pred c-EEE
Q 043456 322 P-YQV 325 (447)
Q Consensus 322 ~-yr~ 325 (447)
+ |.+
T Consensus 154 ~~~~i 158 (391)
T PRK12292 154 PNFTL 158 (391)
T ss_pred CCeEE
Confidence 6 543
No 55
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.80 E-value=2.9e-06 Score=85.36 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHH-HHHhC----CcCCCcCccEEEecCCCcccccc-CCChhHHHHhhccccCC
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEV-MAKCA----QLAQFDEELYKVTGEGDDKYLIA-TAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~-~~~~G----~~~~~~~~lf~i~~~~~~~~L~p-TsE~~l~~l~~~~~~s~ 251 (447)
..+++-+.+.+...||+++..|.+.+... ++.-+ |...-..+.|.|++ ...|+. |+-.. ...+.+
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~---~~lLRThTSp~q-ir~L~~----- 181 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDD---GLLLRTHTSPVQ-IRTMEK----- 181 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcC---CceeeccCcHHH-HHHHHh-----
Confidence 34455667778889999999999976553 33322 22112235677743 567777 44443 333322
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc-C--CcEEEEEe
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML-K--IPYQVVAI 328 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L-g--l~yr~v~~ 328 (447)
...|+|+.++|.|||++... -.+.++|.++|.......-. |..+......+++.| | +..|. .
T Consensus 182 ~~~Pirif~~G~VyR~D~~D-------atH~~~FhQleglvvd~~vt------f~dLK~~L~~fl~~~fg~~~~~R~--r 246 (339)
T PRK00488 182 QKPPIRIIAPGRVYRNDSDD-------ATHSPMFHQVEGLVVDKNIS------FADLKGTLEDFLKAFFGEDVKIRF--R 246 (339)
T ss_pred cCCCeEEEEeeeEEEcCCCC-------cccCcceeeEEEEEEeCCCC------HHHHHHHHHHHHHHHcCCCCeEEe--c
Confidence 57899999999999998621 12688999999988876533 566666666777765 5 23332 2
Q ss_pred cCCCCCcccccccceeeeecC--------CCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHH
Q 043456 329 VSGALNDAAAKKLDLEAWFPA--------SQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERT 400 (447)
Q Consensus 329 ~t~dlg~~a~~~~diE~w~p~--------~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rl 400 (447)
|+--..-.-|-++|+.....+ ..+|.||..|...-----+..+| ++ . .| +-.+.|++++|+
T Consensus 247 psyFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~~gi---d~----~--~~--~G~AfG~GleRl 315 (339)
T PRK00488 247 PSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRNVGI---DP----E--EY--SGFAFGMGIERL 315 (339)
T ss_pred CCCCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHHHcCC---Cc----c--cc--eEEEEeecHHHH
Confidence 221111111234554333221 23599998876421111233343 21 1 12 222568899998
Q ss_pred HH
Q 043456 401 IC 402 (447)
Q Consensus 401 l~ 402 (447)
..
T Consensus 316 aM 317 (339)
T PRK00488 316 AM 317 (339)
T ss_pred HH
Confidence 64
No 56
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.77 E-value=7.7e-08 Score=95.23 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=111.4
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHHH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCA 242 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~ 242 (447)
.|+--++|.=+.+.+.+++.+.+.+.++||++|.||.+=..+++.. .-.++||++.|. ++.+.|+|-.-.|++-
T Consensus 9 ~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~g~~l~LRpD~T~~iaR 83 (281)
T PRK12293 9 QGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEKNHQISLRADSTLDVVR 83 (281)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCCCCEEEECCcCCHHHHH
Confidence 5667788999999999999999999999999999999976666521 234689998775 6789999977788988
Q ss_pred HhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 243 YHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 243 l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
+++.... ...+|+|++.++++||.|. |||+|...=.+-.+. . .+++..+.++++.||++
T Consensus 84 ~~a~~~~-~~~~p~r~~Y~g~vfR~~~-------------rEf~Q~GvEliG~~~---~----~Evi~la~~~l~~lgl~ 142 (281)
T PRK12293 84 IVTKRLG-RSTEHKKWFYIQPVFRYPS-------------NEIYQIGAELIGEED---L----SEILNIAAEIFEELELE 142 (281)
T ss_pred HHHHhcc-cCCCceeEEEeccEEecCC-------------CcccccCeEeeCCCC---H----HHHHHHHHHHHHHcCCC
Confidence 8865432 2478999999999999872 699996665554432 2 38999999999999999
Q ss_pred EEEEEecCC
Q 043456 323 YQVVAIVSG 331 (447)
Q Consensus 323 yr~v~~~t~ 331 (447)
+. +.++..
T Consensus 143 ~~-i~ig~~ 150 (281)
T PRK12293 143 PI-LQISNI 150 (281)
T ss_pred CE-EEECCH
Confidence 74 555543
No 57
>PLN02972 Histidyl-tRNA synthetase
Probab=98.70 E-value=2.1e-07 Score=102.01 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=116.3
Q ss_pred CccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CCcCCCcCccEEEecC-CCccccccCCChhH
Q 043456 163 GGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQLAQFDEELYKVTGE-GDDKYLIATAEQPL 240 (447)
Q Consensus 163 G~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l 240 (447)
-.|+.=|+|.=+.+.+.+++-+.+.+.++||.+|.||.+-..+++.+. |. . ..+||.+.|. |+.++|+|-.-.|+
T Consensus 330 PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ge--d-~k~mY~f~D~gGr~LaLRPDlTvPi 406 (763)
T PLN02972 330 PKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGE--D-SKLIYDLADQGGELCSLRYDLTVPF 406 (763)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCc--c-hhheEEEECCCCCEEEeCCCChHHH
Confidence 367788899999999999999999999999999999999999888642 21 1 2579999876 57899999878899
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
+-+++.... .|+|.|.++++||+|... +| |.|||.+.+.=++-..+...++ .+++..+.++++.||
T Consensus 407 AR~vA~n~~----~p~KrYyiG~VFR~e~pq-----kG--R~REF~Q~G~EIIG~~~~~~aD---AEVI~La~E~L~~LG 472 (763)
T PLN02972 407 ARYVAMNGI----TSFKRYQIAKVYRRDNPS-----KG--RYREFYQCDFDIAGVYEPMGPD---FEIIKVLTELLDELD 472 (763)
T ss_pred HHHHHhCCC----CcceEEEeccEEecCCCC-----CC--CCccceEEeEEEEcCCCcchhh---HHHHHHHHHHHHhCC
Confidence 988876432 489999999999999643 34 7889999776666542220022 468888999999999
Q ss_pred Cc-EEEEEecC
Q 043456 321 IP-YQVVAIVS 330 (447)
Q Consensus 321 l~-yr~v~~~t 330 (447)
++ |.+ .+..
T Consensus 473 i~df~I-~INh 482 (763)
T PLN02972 473 IGTYEV-KLNH 482 (763)
T ss_pred CCceEE-EeCC
Confidence 95 554 4443
No 58
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=98.68 E-value=3.2e-07 Score=91.84 Aligned_cols=146 Identities=19% Similarity=0.232 Sum_probs=108.6
Q ss_pred cceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHHHH
Q 043456 165 RGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCAY 243 (447)
Q Consensus 165 g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l 243 (447)
|+.-|.|.=++..+.+++-+.+.+.++||++|.||.+-..+++...+... .+++|.+.|. |+.++|+|-.-.|++.+
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~G~~l~LR~D~T~~iaR~ 78 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRSGRVLALRPDLTVPIARY 78 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTTSSEEEE-SSSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecCCcEeccCCCCcHHHHHH
Confidence 56678899999999999999999999999999999999999887655322 3489998765 67899999777899988
Q ss_pred hhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHH-HcCCc
Q 043456 244 HIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQ-MLKIP 322 (447)
Q Consensus 244 ~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~-~Lgl~ 322 (447)
++.... ...|.|++.++++||++.... | |.+||.+...=.|-.+ . ... =.+++..+.++++ .||+.
T Consensus 79 ~a~~~~--~~~~~r~~y~g~vfR~~~~~~-----g--~~re~~Q~g~Eiig~~-~--~~~-daEvi~l~~e~l~~~l~~~ 145 (311)
T PF13393_consen 79 VARNLN--LPRPKRYYYIGPVFRYERPGK-----G--RPREFYQCGFEIIGSS-S--LEA-DAEVIKLADEILDRELGLE 145 (311)
T ss_dssp HHHCCG--SSSSEEEEEEEEEEEEETTTT-----T--BESEEEEEEEEEESSS-S--HHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHhcC--cCCCceEEEEcceeeccccCC-----C--CCceeEEEEEEEECCC-C--HHH-HHHHHHHHHHHHHhhcCCC
Confidence 887632 678999999999999985322 2 8899999877666555 3 332 2577888899997 99995
Q ss_pred -EEE
Q 043456 323 -YQV 325 (447)
Q Consensus 323 -yr~ 325 (447)
+.+
T Consensus 146 ~~~i 149 (311)
T PF13393_consen 146 NFTI 149 (311)
T ss_dssp SEEE
T ss_pred CcEE
Confidence 544
No 59
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.67 E-value=3.8e-07 Score=94.46 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=114.2
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CCcCCCcCccEEEecC--CCccccccCCChhH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQLAQFDEELYKVTGE--GDDKYLIATAEQPL 240 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l 240 (447)
.|+-=++|.=+...+.+.+-+.+.+.++||.+|.||.+=..+++... |.. ...++|++.|. |+.+.|+|=.-.|+
T Consensus 11 ~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~--~~~~~y~f~D~~~g~~l~LRpD~T~~i 88 (392)
T PRK12421 11 DGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQD--LKLQTFKLIDQLSGRLMGVRADITPQV 88 (392)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCcc--chhceEEEEcCCCCcEEEECCcCCHHH
Confidence 46677889999999999999999999999999999999988888653 432 33579998874 56789999777888
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
+-+++... ....|+|+|.++++||.+... .| |.|||.|...=.|-.+.- .+ =.+++..+.++++.||
T Consensus 89 aR~~a~~~--~~~~p~R~~Y~g~VfR~~~~~-----~g--r~rEf~Q~GvEiiG~~~~-~a---DaEvi~l~~e~l~~lg 155 (392)
T PRK12421 89 ARIDAHLL--NREGVARLCYAGSVLHTLPQG-----LF--GSRTPLQLGAELYGHAGI-EA---DLEIIRLMLGLLRNAG 155 (392)
T ss_pred HHHHHhhc--CCCCceEEEEeeeEEEcCCCc-----CC--CcCccceeceEEeCCCCc-hh---HHHHHHHHHHHHHHcC
Confidence 88766543 236799999999999987532 34 889999976666654422 12 2477888899999999
Q ss_pred Cc-EEE
Q 043456 321 IP-YQV 325 (447)
Q Consensus 321 l~-yr~ 325 (447)
++ |.+
T Consensus 156 i~~~~l 161 (392)
T PRK12421 156 VPALHL 161 (392)
T ss_pred CCCeEE
Confidence 96 554
No 60
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.65 E-value=3.7e-07 Score=89.84 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEec--CCCccccccCCChhHHHHhhccccCCC
Q 043456 175 RLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG--EGDDKYLIATAEQPLCAYHIDDWIHPS 252 (447)
Q Consensus 175 ~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~--~~~~~~L~pTsE~~l~~l~~~~~~s~~ 252 (447)
++...+++.+++.+.+.||.+|.||.|.... +| -+.+.|.+.. .+.+++|+-+.+..+-.+....
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~----~~----~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~----- 68 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT----GG----AGARPFLVKYNALGLDYYLRISPQLFKKRLMVGG----- 68 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC----Cc----cccceEEeeecCCCCcEEeecCHHHHHHHHHhcC-----
Confidence 4677889999999999999999999998552 21 1124577742 2578899866555433322221
Q ss_pred CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 253 ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 253 ~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
+. |+|++++|||+| +. + + -|++||+|.|.+.--.+ -++.++..+.++.
T Consensus 69 -~~-~vf~i~~~fR~e-~~-~---~--~hl~EF~~le~e~~~~~-~~dvm~~~e~lv~ 116 (269)
T cd00669 69 -LD-RVFEINRNFRNE-DL-R---A--RHQPEFTMMDLEMAFAD-YEDVIELTERLVR 116 (269)
T ss_pred -CC-cEEEEecceeCC-CC-C---C--CcccceeEEEEEEecCC-HHHHHHHHHHHHH
Confidence 11 899999999999 42 1 2 38999999999833223 1235555555543
No 61
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.65 E-value=8.8e-07 Score=86.01 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCc-HHHHHHhCCcC----CCcCccEEEecC----CCcccccc-CCChhHHHHhhcc
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMR-KEVMAKCAQLA----QFDEELYKVTGE----GDDKYLIA-TAEQPLCAYHIDD 247 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~-~~~~~~~G~~~----~~~~~lf~i~~~----~~~~~L~p-TsE~~l~~l~~~~ 247 (447)
..+.+-+.+.+...||+++..|.+.. ...++.-...+ .-..+.|.+.+. .+...|+. |+...+-.|
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l---- 95 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL---- 95 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHH----
Confidence 44555566778899999999999955 44555544221 112355666322 23556666 332222222
Q ss_pred ccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc-CCcEEEE
Q 043456 248 WIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML-KIPYQVV 326 (447)
Q Consensus 248 ~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L-gl~yr~v 326 (447)
.+.+..|+|++++|+|||+|.- | .-.+.+|.|+|.......- .+..+....+.+++.| |....+-
T Consensus 96 -~~~~~~p~kif~iG~VyR~D~~----D---~th~~~f~Qleg~~~~~~~------~f~~Lk~~l~~l~~~lfG~~~~~r 161 (247)
T PF01409_consen 96 -NKHRPPPIKIFEIGKVYRRDEI----D---ATHLPEFHQLEGLVVDKNV------TFEDLKGTLEELLKELFGIDVKVR 161 (247)
T ss_dssp -TTTSHSSEEEEEEEEEESSSCS----B---SSBESEEEEEEEEEEETTE-------HHHHHHHHHHHHHHHHTTTEEEE
T ss_pred -HHhcCCCeEEEecCceEecCCc----c---cccCccceeEeeEEEeccc------chhHHHHHHHHHHHHHhhcccceE
Confidence 4556789999999999999873 2 2367899999998765442 2677888888999988 9873332
Q ss_pred EecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHH
Q 043456 327 AIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCI 404 (447)
Q Consensus 327 ~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~al 404 (447)
..++---...-+.+.|+....+..++|.||+.|..-----.+.++|- . ..+. -+.|++++|+....
T Consensus 162 ~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid---~----~~~~-----~A~G~GleRlam~~ 227 (247)
T PF01409_consen 162 FRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGID---E----EYPG-----FAFGLGLERLAMLK 227 (247)
T ss_dssp EEECEETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT-----T----TSEE-----EEEEEEHHHHHHHH
T ss_pred eecCCCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcC---c----cceE-----EEecCCHHHHHHHH
Confidence 23332222222334454443467788999999863211123445551 0 1111 26688999987544
No 62
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.1e-06 Score=87.83 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC------CcCCCcCccEEEecCCCcccccc-CCChhHHHHhhccccC
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA------QLAQFDEELYKVTGEGDDKYLIA-TAEQPLCAYHIDDWIH 250 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G------~~~~~~~~lf~i~~~~~~~~L~p-TsE~~l~~l~~~~~~s 250 (447)
..+++-+.+.+.+.||+++..| .|-.+.|--.. |...-..+.|.+++..+.+.|+- |+-+..-.|......
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp-~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~- 191 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGP-EIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKI- 191 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCC-cccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCC-
Confidence 4445566777888999999999 45455443322 22222245666765322346664 544444334333222
Q ss_pred CCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC-CcEEEEEec
Q 043456 251 PSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK-IPYQVVAIV 329 (447)
Q Consensus 251 ~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg-l~yr~v~~~ 329 (447)
|+|+.+.++|||+|... -...++|.++|..++...-. +..+....+++++.++ ....+-..+
T Consensus 192 ----P~k~~~~grvyR~D~~D-------aTHs~~FhQiEGlvvd~~~s------~~~Lkg~L~~f~~~~fg~~~~vRfrp 254 (335)
T COG0016 192 ----PIKIFSPGRVYRNDTVD-------ATHSPEFHQIEGLVVDKNIS------FADLKGTLEEFAKKFFGEDVKVRFRP 254 (335)
T ss_pred ----CceEecccceecCCCCC-------cccchheeeeEEEEEeCCcc------HHHHHHHHHHHHHHhcCCCcceEeec
Confidence 99999999999999542 23689999999988877644 6677777778887766 331211222
Q ss_pred CCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHH
Q 043456 330 SGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTIC 402 (447)
Q Consensus 330 t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~ 402 (447)
+= .+.-...+.+++|++.+++|.||..|.-.-----+.+|| ++ . .+ +-.+.|+|++|+-.
T Consensus 255 sy--FPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~---~~-----~-~~--~GfAfGlGlERlAM 314 (335)
T COG0016 255 SY--FPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGI---DP-----E-EY--SGFAFGLGLERLAM 314 (335)
T ss_pred CC--CCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCC---CC-----C-cc--eEEEEeecHHHHHH
Confidence 11 111123557888999999999998876432112344454 11 1 11 11267889999864
No 63
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.59 E-value=2.3e-06 Score=89.97 Aligned_cols=197 Identities=13% Similarity=0.130 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh------CCcCCCcCccEEEecC-------------------------
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC------AQLAQFDEELYKVTGE------------------------- 226 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~------G~~~~~~~~lf~i~~~------------------------- 226 (447)
..+++-+.+.+...||+++..|..+-.+.|-=- -|...-..+.|.+++.
T Consensus 232 ~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G~~ 311 (494)
T PTZ00326 232 LKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVGGY 311 (494)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhccCCc
Confidence 445556677778899999988866655544222 2332223456666531
Q ss_pred -------------CCcccccc-CCChhHHHHhhccccC--C-CC-cCeEeeccccccccCccCCCCCCcCceeeeeeeee
Q 043456 227 -------------GDDKYLIA-TAEQPLCAYHIDDWIH--P-SE-LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKV 288 (447)
Q Consensus 227 -------------~~~~~L~p-TsE~~l~~l~~~~~~s--~-~~-LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~ 288 (447)
...+.|++ |+-+.. .++....-. + .. -|+|++++++|||+|.-.++ |.++|+|+
T Consensus 312 gS~Gw~y~W~~e~a~~~vLRtHtTa~~a-R~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Dat-------H~~eFhQ~ 383 (494)
T PTZ00326 312 GSIGWRYDWKLEEARKNILRTHTTAVSA-RMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDAT-------HLAEFHQV 383 (494)
T ss_pred CCcccccccccchhccccccCCCCHHHH-HHHHhhccccccccCCCCceEEecCCEecCCCCCCC-------cCceeEEE
Confidence 02578888 554433 333322111 1 22 39999999999999975444 89999999
Q ss_pred eEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhh
Q 043456 289 EQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQS 367 (447)
Q Consensus 289 e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs 367 (447)
|..++..+-. +.+++....++|+.||+. .|. .|+ ..+..-..+.+++|.|..++|.||..|..+.--.-
T Consensus 384 Eg~vi~~~~s------~~~L~~~l~~f~~~lG~~~~Rf--rP~--yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL 453 (494)
T PTZ00326 384 EGFVIDRNLT------LGDLIGTIREFFRRIGITKLRF--KPA--FNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEML 453 (494)
T ss_pred EEEEEeCCCC------HHHHHHHHHHHHHhcCCCceEE--ecC--CCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHH
Confidence 9998876532 567888889999999983 222 121 11112234577889999989999988876531112
Q ss_pred hhcccEEeccCCCCCceeEEEeecccccchhHHHHHH
Q 043456 368 RRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCI 404 (447)
Q Consensus 368 ~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~al 404 (447)
+.+++ +. . + +.-+.|++++|+....
T Consensus 454 ~~~Gi---~~----~---~--~~~A~GlGleRlaMi~ 478 (494)
T PTZ00326 454 RPMGF---PE----D---V--TVIAWGLSLERPTMIK 478 (494)
T ss_pred HhcCC---CC----c---c--eEEEEEecHHHHHHHH
Confidence 34554 11 1 1 1236788999987543
No 64
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.53 E-value=1.2e-06 Score=90.18 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHHHHH-hCCcCCCcCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcC
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELP 255 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LP 255 (447)
+.+.+-+.+.+.++||.+|.||.+-..+++.. .|. .-.++||.+.|. ++.++|+|-.-.|++-++... ....|
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~---~~~~p 82 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENGEELCLRPDFTIPVCRRHIAT---AGGEP 82 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHc---CCCCC
Confidence 46666777788999999999999999887743 342 234679998775 678999997778888776554 23679
Q ss_pred eEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-EEE
Q 043456 256 IRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-YQV 325 (447)
Q Consensus 256 lrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr~ 325 (447)
+|+|.+++|||.| + | |.|||++...=.|-.++...++ .+++..+.++++.||+. |.+
T Consensus 83 ~R~~Y~g~VfR~~-~--g-------r~rEf~Q~GvEiiG~~~~~~aD---aEvi~l~~~~L~~lgl~~~~i 140 (373)
T PRK12295 83 ARYAYLGEVFRQR-R--D-------RASEFLQAGIESFGRADPAAAD---AEVLALALEALAALGPGDLEV 140 (373)
T ss_pred eEEEEEccEEECC-C--C-------CCCcceEeeEEeeCCCCCccch---HHHHHHHHHHHHHcCCCceEE
Confidence 9999999999999 2 4 6799999877777543210122 47788889999999986 443
No 65
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.34 E-value=1e-05 Score=86.22 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=120.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcH-----HHHHHhCCcCCCcCc--------------------------
Q 043456 171 GDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRK-----EVMAKCAQLAQFDEE-------------------------- 219 (447)
Q Consensus 171 ~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~-----~~~~~~G~~~~~~~~-------------------------- 219 (447)
|.-....+.+++-+++.+...||++|.+|.+-.. .++..--|...-..+
T Consensus 229 ~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~ 308 (489)
T PRK04172 229 PGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEH 308 (489)
T ss_pred CCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhc
Confidence 3445567778888899999999999999998643 233222222111112
Q ss_pred ---------cEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeee
Q 043456 220 ---------LYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVE 289 (447)
Q Consensus 220 ---------lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e 289 (447)
+|..++. +..+.|+|-.-.+++.++.. ....|+|++++++|||+|.-..| |.+||.+.+
T Consensus 309 g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~~d~~-------~l~Ef~ql~ 377 (489)
T PRK04172 309 GGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDTIDAT-------HLPEFYQLE 377 (489)
T ss_pred cCCCCCccccCCcchhhhhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCCCCcc-------cCCchheEE
Confidence 2222222 24578999555566666554 33689999999999999863222 357999999
Q ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhh
Q 043456 290 QFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSR 368 (447)
Q Consensus 290 ~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~ 368 (447)
...+-.+-. |.++....+.++..||++ ++. .++..-.. .....+.++.++. +|.||+.|...----.+
T Consensus 378 ~~i~G~~~~------f~elkg~l~~ll~~lGi~~~~~--~~~~~p~~--~P~~~~~i~~~g~-~w~eiG~~G~l~Pevl~ 446 (489)
T PRK04172 378 GIVMGEDVS------FRDLLGILKEFYKRLGFEEVKF--RPAYFPFT--EPSVEVEVYHEGL-GWVELGGAGIFRPEVLE 446 (489)
T ss_pred EEEEeCCCC------HHHHHHHHHHHHHHhCCceEEE--cCCcCCCC--CCeEEEEEEECCC-CeEEEEeccccCHHHHH
Confidence 887765322 678889999999999995 443 22211111 1122334555543 48888766532211245
Q ss_pred hcccEEeccCCCCCceeEEEeecccccchhHHHHHHH
Q 043456 369 RLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCIL 405 (447)
Q Consensus 369 rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~all 405 (447)
.++|.. +.+ +.++.++|++...+
T Consensus 447 ~~gi~~---------~v~-----~~el~le~l~m~~~ 469 (489)
T PRK04172 447 PLGIDV---------PVL-----AWGLGIERLAMLRL 469 (489)
T ss_pred HCCCCC---------ceE-----EEEEcHHHHHHHHh
Confidence 666621 222 45667888865443
No 66
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.20 E-value=7e-05 Score=78.63 Aligned_cols=195 Identities=11% Similarity=0.084 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHCCCeEec-CCccCcHHHHHHh------CCcCCCcCccEEEecC-------------------------
Q 043456 179 ALINFGLDFLEKKSYTLLH-TPFFMRKEVMAKC------AQLAQFDEELYKVTGE------------------------- 226 (447)
Q Consensus 179 aL~~~~~~~~~~~G~~~v~-~P~l~~~~~~~~~------G~~~~~~~~lf~i~~~------------------------- 226 (447)
.+++-+.+.+.+.||+++. .|.+ -.+.|-=- -|...-..+.|.+++.
T Consensus 225 ~~~~ei~~if~~mGF~e~~~g~~v-es~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~gS 303 (492)
T PLN02853 225 KVRQQFRKIFLQMGFEEMPTNNFV-ESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGGYGS 303 (492)
T ss_pred HHHHHHHHHHHhCCCEEecCCCCe-echhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCCCCc
Confidence 4455567777889999995 4544 33333111 1332233456666521
Q ss_pred -----------CCcccccc-CCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEe
Q 043456 227 -----------GDDKYLIA-TAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCIT 294 (447)
Q Consensus 227 -----------~~~~~L~p-TsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~ 294 (447)
...+.|+. |+-+..-.|+.... ...-|++++.+++|||+|.-.+ -...+|.|+|.++..
T Consensus 304 ~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~--~~~~p~k~fsigrVfR~d~iDa-------tH~~eFhQ~EG~vvd 374 (492)
T PLN02853 304 IGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQ--KGFKPKRYFSIDRVFRNEAVDR-------THLAEFHQVEGLVCD 374 (492)
T ss_pred cccccccccchhcccccCCCCCHHHHHHHHHhhc--cCCCCcEEEeccceecCCCCCc-------ccCccceeEEEEEEe
Confidence 03467776 66665555553211 1236999999999999997321 267899999999887
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEE
Q 043456 295 SPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRY 374 (447)
Q Consensus 295 ~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y 374 (447)
..-. +..+......+|+.||.. .+-..|+- .+..-..+.+++|.++.++|.||..|....----+.++|
T Consensus 375 ~~~t------~~~L~g~l~~f~~~lg~~-~~RfrP~y--fPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi-- 443 (492)
T PLN02853 375 RGLT------LGDLIGVLEDFFSRLGMT-KLRFKPAY--NPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGL-- 443 (492)
T ss_pred CCCC------HHHHHHHHHHHHHHcCCc-eEEEecCC--CCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCC--
Confidence 6533 567788888899999872 22222321 111223446667888888899998776432112344555
Q ss_pred eccCCCCCceeEEEeecccccchhHHHHHH
Q 043456 375 GQKKSNEQTKQYVHLLNSTLTATERTICCI 404 (447)
Q Consensus 375 ~~~~~~~~~~~~~htlngt~~ai~Rll~al 404 (447)
.. . + +.-+.|++++|+....
T Consensus 444 -~~----~---~--~~~A~GlGleRlaMl~ 463 (492)
T PLN02853 444 -PE----D---V--NVIAWGLSLERPTMIL 463 (492)
T ss_pred -CC----c---c--eEEEEEecHHHHHHHH
Confidence 11 0 1 1236788999987544
No 67
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.04 E-value=5.1e-06 Score=83.33 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEec--CCCccccccCCChhHHHHhhcccc
Q 043456 173 GVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVTG--EGDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 173 ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~~--~~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
-.++...+++.+++.+.+.||.+|.||.|..... .| ....|..+ |...+ .+..++|+-+.|..+..+++..
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~---~~~~~~~f~~~-y~~~~~~~~~~~~L~~SPe~~~kr~la~~-- 77 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATV---TDIHLVPFETR-FVGPGASQGKTLWLMTSPEYHMKRLLAAG-- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccC---CCccCCceeee-eccccccCCcceEEecCHHHHHHHHhhcc--
Confidence 3567888999999999999999999999976442 22 23334333 33222 2467899855555544333221
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMI 309 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~ 309 (447)
+. |+|++++|||+|-+.. -+..||+|.|.+....+ .++.++..+.++
T Consensus 78 ----~~-rvf~i~~~FR~e~~~~-------~H~~EFt~lE~y~~~~d-~~dlm~~~E~li 124 (306)
T PRK09350 78 ----SG-PIFQICKSFRNEEAGR-------YHNPEFTMLEWYRPHYD-MYRLMNEVDDLL 124 (306)
T ss_pred ----cc-ceEEecceeecCCCCC-------CCCcHHHhhhhhhhCCC-HHHHHHHHHHHH
Confidence 22 9999999999996422 38899999999844332 112444444444
No 68
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.5e-05 Score=81.96 Aligned_cols=119 Identities=15% Similarity=0.280 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhcccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
.-.+++..++..+++.|...||.+|.||.|.++.- .| - .=|-+..+ ...+|--|-|..-+=.|.+-.-+
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP---EG----A--RDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGf 209 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP---EG----A--RDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGF 209 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC---cc----c--cccccccccCCCceeecCCCHHHHHHHHHHhcc
Confidence 45678889999999999999999999999975541 12 1 11555544 23688888887766555554444
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIKNSEE 314 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~~~~~ 314 (447)
. ||||+.+|||+|-- ++ | |+-|||++|+- +|+..++ .++..+.|+.....
T Consensus 210 d------RYyQIarCFRDEDl-Ra-D-----RQPEFTQiD~EmSF~~~ed--v~~~~E~l~~~vf~ 260 (585)
T COG0173 210 D------RYYQIARCFRDEDL-RA-D-----RQPEFTQIDLEMSFVDEED--VMELIEKLLRYVFK 260 (585)
T ss_pred c------ceeeeeeeeccccc-cc-c-----cCCcceeEeEEeecCCHHH--HHHHHHHHHHHHHH
Confidence 2 79999999999954 33 4 89999999995 8988776 88888888765443
No 69
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.94 E-value=0.00028 Score=70.41 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHCCCeEecCCccCcH-HHHHHhCCcCC----CcCccEEEecCCCccccccCCChhHHHHhhccccCCCC
Q 043456 179 ALINFGLDFLEKKSYTLLHTPFFMRK-EVMAKCAQLAQ----FDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 179 aL~~~~~~~~~~~G~~~v~~P~l~~~-~~~~~~G~~~~----~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~ 253 (447)
.+.+-+.+.+...||.++.+|.+... ..++.-+..++ -..+.|.+. +.-+|+++--..+....+... +
T Consensus 76 ~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N~---~- 148 (294)
T TIGR00468 76 RVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEENE---K- 148 (294)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhcC---C-
Confidence 34455677888999999999999887 45555442220 111345664 256888865555554444322 2
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc--EEEEEecCC
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP--YQVVAIVSG 331 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~--yr~v~~~t~ 331 (447)
.|+|++++|+|||.+... .+ ++.||.+++...... . . .|..+....+.+++.||+. ++. .++.
T Consensus 149 ~pirlFEiGrVfr~d~~d---~~----~~pef~ql~gl~~~~--~--~--~f~dLKg~le~ll~~l~~~~~~~~--~~~~ 213 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTVD---AT----HLPEFHQVEGLVIDK--N--V--SFTNLKGFLEEFLKKMFGETEIRF--RPSY 213 (294)
T ss_pred CCceEEEecceEEcCCCC---Cc----cCChhhEEEEEEECC--C--C--CHHHHHHHHHHHHHHhCCCcceee--ccCC
Confidence 899999999999987521 12 244999999884432 2 1 2788888999999999986 332 1221
Q ss_pred CCCcccccccceeeeecCCCceeeEEEecc
Q 043456 332 ALNDAAAKKLDLEAWFPASQTYRELVSCSN 361 (447)
Q Consensus 332 dlg~~a~~~~diE~w~p~~~~~~ev~s~sn 361 (447)
.-...-+.+.|+ +.+...+|.||+.|.-
T Consensus 214 ~p~~~Ps~e~~i--~~~~g~~w~eiG~~G~ 241 (294)
T TIGR00468 214 FPFTEPSAEIDV--YCWEGKTWLEVLGAGM 241 (294)
T ss_pred CCCCCCCEEEEE--EEeCCCccEEEEEecc
Confidence 111111223343 3322235889987763
No 70
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.81 E-value=0.00023 Score=72.27 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEe-----cCCCccccccCCChhHHHHhhcc
Q 043456 173 GVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVT-----GEGDDKYLIATAEQPLCAYHIDD 247 (447)
Q Consensus 173 ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~-----~~~~~~~L~pTsE~~l~~l~~~~ 247 (447)
-.++..++.+.+++.+.+.||.+|.||.|..... .| +.+.|.+. .-+..+||..+.|..+=.+...-
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~---~~-----~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC---EG-----GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS---SS-----SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc---Cc-----cccccccccchhhhcccceecCcChHHHHhhhcccc
Confidence 5678899999999999999999999999975531 11 35678887 12467889988877553333221
Q ss_pred ccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEE-ecCCcchHHHHHHHHHHH
Q 043456 248 WIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCI-TSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 248 ~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f-~~~e~~~s~~~~~~~~~~ 311 (447)
+ =++|++++|||+|-+ ++-....||+|.|.+.- +..++ ..+..+.++..
T Consensus 93 ------~-~~vf~i~~~FR~E~~------~~~rHl~EFtmLE~e~a~~~~~~--lm~~~e~li~~ 142 (335)
T PF00152_consen 93 ------L-ERVFEIGPCFRNEES------RTRRHLPEFTMLEWEMAFADYDD--LMDLIEELIKY 142 (335)
T ss_dssp ------H-SEEEEEEEEE-BSSS------CBTTBSSEEEEEEEEEETSSHHH--HHHHHHHHHHH
T ss_pred ------c-hhhhheecceeccCc------ccccchhhhhhhhhccccCcHHH--hHHHHHHHHHH
Confidence 1 369999999999954 12346779999999963 23233 55444444443
No 71
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.79 E-value=7.6e-05 Score=80.63 Aligned_cols=116 Identities=16% Similarity=0.310 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhcccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
.-.+++..+++.+++.+.+.||.+|.||.|..... ++. .. |.+... +.++|--++|..-+-.+..-.-
T Consensus 136 ~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~-eGa---r~-----f~vp~~~~~~~~y~L~qSpQlykq~l~v~G- 205 (583)
T TIGR00459 136 QRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP-EGA---RD-----YLVPSRVHKGEFYALPQSPQLFKQLLMVSG- 205 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC-CCC---cc-----eeeeeecCCCceeecCCCHHHHHHHHHhcc-
Confidence 45688999999999999999999999999985331 111 11 222211 2244433455443333211111
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~~ 311 (447)
+ =|+|++++|||+|-... . |.-||+|.|++ +|..-++ .++..+.++..
T Consensus 206 ----~-ervfqI~~~FR~E~~~t----~---r~pEFT~le~E~af~d~~d--vm~~~E~li~~ 254 (583)
T TIGR00459 206 ----V-DRYYQIARCFRDEDLRA----D---RQPEFTQIDMEMSFMTQED--VMELIEKLVSH 254 (583)
T ss_pred ----c-CcEEEEcceeeCCCCCC----C---CCcccCcceeeecCCCHHH--HHHHHHHHHHH
Confidence 1 37999999999996422 2 77999999999 5653333 77777776653
No 72
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.75 E-value=0.00011 Score=80.79 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.+++..+++.+++.+.+.||.+|.||.|.... -+ | ...| ++...-....+|--++|..-+-.+..-.-+
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~-~e--G-Ar~~---~~p~~~~~~~~y~L~qSPQlykq~lm~~G~-- 224 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKST-PE--G-ARDY---LVPSRIHPKEFYALPQSPQLFKQLLMIAGF-- 224 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC-CC--C-Ccce---EEeeecCCCcceecCCCHHHHHHHHHhccC--
Confidence 5678899999999999999999999999998633 11 1 1111 111111112344344554433332211111
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
=|+||+++|||+|-. .+ -|.-||+|.|++ +|..-++ .++..+.++.
T Consensus 225 ----~rvfqI~~~FR~E~~----~t---~r~pEFT~LE~E~af~d~~d--vm~l~E~li~ 271 (706)
T PRK12820 225 ----ERYFQLARCFRDEDL----RP---NRQPEFTQLDIEASFIDEEF--IFELIEELTA 271 (706)
T ss_pred ----CcEEEEechhcCCCC----CC---CcCccccccceeeccCCHHH--HHHHHHHHHH
Confidence 269999999999964 22 267999999999 6654444 7777676665
No 73
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6.8e-05 Score=77.41 Aligned_cols=122 Identities=17% Similarity=0.290 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLE-KKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~-~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++.+++.-+++.+. ..||.+|.||.|.+.. |.- ..=|.+..+ ...+|--|-|...+-.|.+-.-
T Consensus 176 ~nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrT--------PgG-A~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsG 246 (628)
T KOG2411|consen 176 NNLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRT--------PGG-AREFVVPTRTPRGKFYALPQSPQQFKQLLMVSG 246 (628)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeeeccCcchhccC--------CCc-cceeecccCCCCCceeecCCCHHHHHHHHHHhc
Confidence 345788888888888774 6899999999986543 211 122555443 1357777878777777666554
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIKNSEEFYQ 317 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~~~~~i~~ 317 (447)
+. ||||+.+|||+|.. ++ | |+-|||++||- +|+..+. .++..+.++.-...-.+
T Consensus 247 id------rYyQiARCfRDEdl-R~-D-----RQPEFTQvD~EMsF~~~~d--im~liEdll~~~ws~~k 301 (628)
T KOG2411|consen 247 ID------RYYQIARCFRDEDL-RA-D-----RQPEFTQVDMEMSFTDQED--IMKLIEDLLRYVWSEDK 301 (628)
T ss_pred hh------hHHhHHhhhccccc-Cc-c-----cCCcceeeeeEEeccCHHH--HHHHHHHHHHHhchhhc
Confidence 43 79999999999954 43 3 99999999995 7777655 88888888876655444
No 74
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.66 E-value=0.00019 Score=77.98 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEec---CCCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG---EGDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~---~~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++..+.+.+++.+.+.||.+|.||.|.+... ++.+ . |.+.. .+.-|+| ++|..-+-.+..-.-
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~-ega~---~-----f~v~~~~~~~~~~~L-~qSpql~kq~l~~~g 208 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP-EGAR---D-----YLVPSRVHPGKFYAL-PQSPQLFKQLLMVAG 208 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC-CCCc---c-----ceecccccCCceeec-CCCHHHHHHHHHhcc
Confidence 45678899999999999999999999999986531 1211 1 33321 1233444 455543333211111
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-. ++ . |.-||+|.|++ +|..-++ .++..+.++.
T Consensus 209 -----~-~rvfqi~~~FR~E~~-~~---~---r~~EFt~le~e~af~~~~d--vm~~~E~li~ 256 (588)
T PRK00476 209 -----F-DRYYQIARCFRDEDL-RA---D---RQPEFTQIDIEMSFVTQED--VMALMEGLIR 256 (588)
T ss_pred -----c-CceEEEeceeecCCC-CC---C---cCcccccceeeecCCCHHH--HHHHHHHHHH
Confidence 1 379999999999964 22 1 45599999998 5654334 6666666664
No 75
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.66 E-value=0.00022 Score=72.12 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++...+.+.+++.+.+.||.+|.||.|.... ..|... .|.++--+..+||.-+.|..+=.+... +
T Consensus 22 ~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~---~e~~~~-----~f~~~~~~~~~yL~~Spql~lk~l~~~--~-- 89 (322)
T cd00776 22 AIFRIRSEVLRAFREFLRENGFTEVHTPKITSTD---TEGGAE-----LFKVSYFGKPAYLAQSPQLYKEMLIAA--L-- 89 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCC---CCccCC-----ccccccCCCcceecCCHHHHHHHHHHh--h--
Confidence 4567888999999999999999999999998622 112332 344322245788887666544222222 1
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
=++|++++|||+|-+ + +--.+.||+|.|.+..-.++-++.++..+.++.
T Consensus 90 ----~~vf~i~~~FR~E~~----~--~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~ 138 (322)
T cd00776 90 ----ERVYEIGPVFRAEKS----N--TRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIK 138 (322)
T ss_pred ----hhhEEeccccccCCC----C--cCCCcceeeccceeeeccCCHHHHHHHHHHHHH
Confidence 368999999999953 2 124688999999994433112226555555554
No 76
>PLN02903 aminoacyl-tRNA ligase
Probab=97.64 E-value=0.00033 Score=76.35 Aligned_cols=115 Identities=18% Similarity=0.280 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCeEecCCccCcHHHHHHhCCcCCCcCccEEEe--cCCCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEK-KSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVT--GEGDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~-~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~--~~~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++..+++.+++.+.+ .||.+|.||.|..... ++.+ +.+... ..+.-|+|. +|..-+-.+..-.-
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~-eGar-------df~v~~~~~~g~~y~L~-qSPQlykQ~Lm~~G 271 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP-EGAR-------DYLVPSRVQPGTFYALP-QSPQLFKQMLMVSG 271 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC-CCCc-------ccEEeeecCCCcccccC-CCHHHHHHHHHhcc
Confidence 5578889999999999986 9999999999985542 2221 122211 112334444 55543333221111
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+||+++|||+|-.. + -|.-||+|.|++ +|..-++ .++..+.|+.
T Consensus 272 ~------~RvFqIa~~FR~E~~~----t---~RhpEFTqLE~E~sf~d~~d--vm~~~E~li~ 319 (652)
T PLN02903 272 F------DRYYQIARCFRDEDLR----A---DRQPEFTQLDMELAFTPLED--MLKLNEDLIR 319 (652)
T ss_pred C------CcEEEEehhhccCCCC----C---CcccceeeeeeeecCCCHHH--HHHHHHHHHH
Confidence 1 3699999999999642 1 277899999998 5654333 6766666664
No 77
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00022 Score=73.15 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=107.7
Q ss_pred eeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CCcCCCcCccEEEecC-CCccccccCCChhHHHHhh
Q 043456 168 YLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQLAQFDEELYKVTGE-GDDKYLIATAEQPLCAYHI 245 (447)
Q Consensus 168 ~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~ 245 (447)
..+|.=+.....+.+-+.+.+.++||..|.+|+|-+.+.+... |+ .....+|++.|+ ++.+||+|---.|++-++.
T Consensus 11 d~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~ 88 (390)
T COG3705 11 DVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETGGRLGLRPDFTIPVARIHA 88 (390)
T ss_pred hcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCCCeEEecccccHHHHHHHH
Confidence 4456666677788888888899999999999999999988665 43 234579999876 6789999977788888887
Q ss_pred ccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeee--eeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcE
Q 043456 246 DDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEK--VEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPY 323 (447)
Q Consensus 246 ~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k--~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~y 323 (447)
....+ .|.||+=.+.+||...+..| |..||.+ +|++.+.. -. |+ .+++......++.+|++-
T Consensus 89 ~~~~~---~P~Rl~Y~G~Vfr~~~~~~g-------~~~Ef~QaGiEllG~~~-~~--AD---aEvi~la~~~L~~~gl~~ 152 (390)
T COG3705 89 TLLAG---TPLRLSYAGKVFRAREGRHG-------RRAEFLQAGIELLGDDS-AA--AD---AEVIALALAALKALGLAD 152 (390)
T ss_pred HhcCC---CCceeeecchhhhcchhccC-------cccchhhhhhHHhCCCc-ch--hh---HHHHHHHHHHHHHcCCcC
Confidence 66554 89999999999999844333 6679988 67777632 23 43 356777788899999863
Q ss_pred EEEEe
Q 043456 324 QVVAI 328 (447)
Q Consensus 324 r~v~~ 328 (447)
-.+.+
T Consensus 153 ~~l~L 157 (390)
T COG3705 153 LKLEL 157 (390)
T ss_pred eEEEe
Confidence 33333
No 78
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.63 E-value=0.0003 Score=75.01 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhcccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
.-.++...+++.+++.+.+.||.+|.||.|... .+|- ....|.+... +.++||.=+.|..+=.+...-
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~----~~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g-- 239 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPI----AGGA----AARPFITHHNALDIDLYLRIAPELYLKRLIVGG-- 239 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceecc----CCCc----cceeeeeccccCCCceEeccCHHHHHHHHHhcc--
Confidence 556788899999999999999999999999743 2331 0122332111 356788755554332222111
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-. ++ -++-||+|.|++ +|+.-++ .++..+.++.
T Consensus 240 ----~-~rVfei~~~FR~E~~----~~---rH~pEFt~lE~e~a~~d~~d--~m~~~E~li~ 287 (491)
T PRK00484 240 ----F-ERVYEIGRNFRNEGI----DT---RHNPEFTMLEFYQAYADYND--MMDLTEELIR 287 (491)
T ss_pred ----C-CcEEEEecceecCCC----CC---CcCCceEEEEEEEecCCHHH--HHHHHHHHHH
Confidence 1 379999999999953 22 588899999998 4542233 6666666654
No 79
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.62 E-value=0.0003 Score=73.82 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++..++++.+++.+.+.||.+|.||.|+... -+ |. .+.|.++--+..+||.-+.|..+=.+...-
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-~e--g~-----~~~f~v~~~~~~~yL~~Spql~~q~li~~g---- 198 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASA-TE--GG-----TELFPITYFEREAFLGQSPQLYKQQLMAAG---- 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCC-CC--CC-----cceeeeEecCCcEEECcCHHHHHHHHHhcc----
Confidence 4578889999999999999999999999997322 11 22 234555322457788765554332222111
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-. +++ -.+.||+|.|.+ +|..-++ .++..++++.
T Consensus 199 --~-~rVf~i~~~FR~E~~----~t~--rHl~EFt~lE~e~a~~~~~d--lm~~~e~li~ 247 (428)
T TIGR00458 199 --F-ERVYEIGPIFRAEEH----NTH--RHLNEATSIDIEMAFEDHHD--VMDILEELVV 247 (428)
T ss_pred --c-CcEEEEecccccCCC----CCc--cchheeeEeeeeeccCCHHH--HHHHHHHHHH
Confidence 1 369999999999954 221 245699999999 4543333 6666665554
No 80
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.62 E-value=0.00034 Score=73.66 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++..++++.+++.+.+.||.+|.||.|.... . .| +.+.|.+.--+..+||.-+.|..+=.+...
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-~--eg-----~~~~f~~~~~~~~~~L~~Spql~~q~l~~~----- 200 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASG-T--EG-----GAELFPIDYFEKEAYLAQSPQLYKQMMVGA----- 200 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccC-C--CC-----CcceEeEEecCCceEecCCHHHHHHHHHhc-----
Confidence 4567889999999999999999999999996321 1 11 223455543346788877665533222211
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEec-CCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITS-PNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~-~e~~~s~~~~~~~~~ 310 (447)
.+ =|+|++++|||+|-. +++ -...||+|.|++ +|.. -++ .++..+.++.
T Consensus 201 -g~-~rVf~i~~~FR~E~~----~t~--rHl~EFt~lE~e~a~~~~~~~--lm~~~e~lv~ 251 (437)
T PRK05159 201 -GF-ERVFEIGPVFRAEEH----NTS--RHLNEYTSIDVEMGFIDDHED--VMDLLENLLR 251 (437)
T ss_pred -CC-CcEEEEeceeeCCCC----CCc--ccchhhheeeeeeeecccHHH--HHHHHHHHHH
Confidence 11 269999999999964 221 145699999999 5654 333 6666665554
No 81
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.60 E-value=0.00049 Score=69.76 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEec--CCCccccccCCChhHHHHhhcccc
Q 043456 173 GVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVTG--EGDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 173 ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~~--~~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
-.++..++.+.+++.+.+.||.+|.||.|+... +| .. +.|.+.. .+...||.-++|..+=.+...
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~----~~~~~-----~~f~~~~~~~~~~~yL~~Spql~~k~ll~~--- 74 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIA----GGAAA-----RPFITHHNALDMDLYLRIAPELYLKRLIVG--- 74 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCC----CCccc-----eeEEeccCCCCcceeeccCHHHHHHHHHhc---
Confidence 356788899999999999999999999998553 22 22 2343321 145678876665433222211
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
.+ =++|++++|||+|-. | -.++.||+|.|.+.--.+ .++.++..+.++.
T Consensus 75 ---g~-~~vf~i~~~FR~E~~--~-----~rHl~EFt~le~e~~~~~-~~~~m~~~e~li~ 123 (329)
T cd00775 75 ---GF-ERVYEIGRNFRNEGI--D-----LTHNPEFTMIEFYEAYAD-YNDMMDLTEDLFS 123 (329)
T ss_pred ---CC-CcEEEEeccccCCCC--C-----CCCCCceEEEEEeeecCC-HHHHHHHHHHHHH
Confidence 11 479999999999964 2 257889999999733222 2235655555554
No 82
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.60 E-value=0.00032 Score=74.03 Aligned_cols=116 Identities=21% Similarity=0.317 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEec---------CCCccccccCCChhHH
Q 043456 171 GDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG---------EGDDKYLIATAEQPLC 241 (447)
Q Consensus 171 ~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~---------~~~~~~L~pTsE~~l~ 241 (447)
..-.++...+++.+++.+.+.||.+|.||.|.... ..|. .+.|.+.. -+..+||.-+.+..+
T Consensus 130 ~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~---~eg~-----~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l- 200 (450)
T PRK03932 130 GAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASD---CEGA-----GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA- 200 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccC---CCCC-----CCceEeecccccccccccCCCcccccCHHHHH-
Confidence 45678889999999999999999999999998652 1122 23465521 145778887766544
Q ss_pred HHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 242 AYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 242 ~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
.++.. .+ =|+|++++|||+|-+ .+ =-.+.||+|.|.+ +|..-++ .++..+.++.
T Consensus 201 q~l~~------g~-~rVf~i~~~FR~E~~-~t-----~rHl~EFt~lE~e~~~~~~~~--~m~~~e~li~ 255 (450)
T PRK03932 201 EAYAM------AL-GKVYTFGPTFRAENS-NT-----RRHLAEFWMIEPEMAFADLED--NMDLAEEMLK 255 (450)
T ss_pred HHHHh------cc-CCeEEeeeccccCCC-CC-----ccccccccccceEEeccCHHH--HHHHHHHHHH
Confidence 33321 12 368999999999953 22 1345699999998 4443333 6666665554
No 83
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.58 E-value=0.0044 Score=59.09 Aligned_cols=124 Identities=12% Similarity=0.122 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHH-HHHHhCCcCCCcC----ccEEEecCCCccccccCCChhHHHHhhccccCCC
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKE-VMAKCAQLAQFDE----ELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPS 252 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~-~~~~~G~~~~~~~----~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~ 252 (447)
+.+.+-+++.|...||+|+.++.++..+ .++.-+..+.-.. +.+.+.+.- .-+|+++--.++....+..
T Consensus 4 ~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~l~~N----- 77 (218)
T cd00496 4 NKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARALAKL----- 77 (218)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHHHHhc-----
Confidence 3455667888899999999999999883 4554432211000 234454321 3588887777776544443
Q ss_pred CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 253 ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 253 ~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
..|++++++|+|||.+.. + . + ++.||.++.....-.+ + .|.++....+.+++.||
T Consensus 78 ~~~~~lFEiG~Vf~~~~~--~-~--~--~~~E~~~l~~~~~g~~----~--df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 KPPIRIFSIGRVYRNDEI--D-A--T--HLPEFHQIEGLVVDKG----L--TFADLKGTLEEFAKELF 132 (218)
T ss_pred CCCeeEEEEcCeEECCCC--C-C--C--cCCccEEEEEEEECCC----C--CHHHHHHHHHHHHHHhc
Confidence 679999999999998742 1 1 1 1339998886654422 2 27888889999999999
No 84
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.56 E-value=0.00028 Score=71.74 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCC---CcCccEEEecCCCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQ---FDEELYKVTGEGDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~---~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.++..++++.+++.+.+.||.+|.||.|.... +-+... ..-..|.++--+..+||..+.|.. -.+....
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~----~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g- 101 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPST----DPLMGLGSDLPVKQISIDFYGVEYYLADSMILH-KQLALRM- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCC----CCCCCccccCCccccccccCCCceeeccCHHHH-HHHHHhh-
Confidence 4567889999999999999999999999998651 111111 111223332224578888765543 2222211
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-.. +-+=..+.||+|.|.+ .|..-++ .++..++++.
T Consensus 102 -----~-~rVfeI~p~FR~E~~~----~~~~rHl~EFtmlE~e~~~~d~~d--lm~~~e~lv~ 152 (335)
T PRK06462 102 -----L-GKIFYLSPNFRLEPVD----KDTGRHLYEFTQLDIEIEGADLDE--VMDLIEDLIK 152 (335)
T ss_pred -----c-CcEEEEeccccCCCCC----CCCCCCCCchheeeehhhcCCHHH--HHHHHHHHHH
Confidence 2 3799999999999642 2112478899999998 4432123 5555555544
No 85
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.53 E-value=0.00076 Score=70.15 Aligned_cols=144 Identities=11% Similarity=0.141 Sum_probs=88.7
Q ss_pred cccccc-CCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHH
Q 043456 229 DKYLIA-TAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEE 307 (447)
Q Consensus 229 ~~~L~p-TsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~ 307 (447)
.+.|+. |+-..+..|-. +.....+|+|++++++|||+|... |. -++++|.++|..+....-. |.+
T Consensus 182 ~~lLRTHTTpgqirtL~~--L~~~~~~PiRIFsIGRVfRrD~~~---Da---THl~eFhQlEGLVVdedVS------f~D 247 (533)
T TIGR00470 182 TLTLRSHMTSGWFITLSS--IIDKRKLPLKLFSIDRCFRREQRE---DR---SHLMTYHSASCVVVDEEVS------VDD 247 (533)
T ss_pred CcccccCChhHHHHHHHH--HhhcCCCCeEEEeeeeEEecCCCC---CC---ccCceeeeEEEEEECCCCC------HHH
Confidence 567776 43332322221 112346899999999999999521 21 2589999999887766543 788
Q ss_pred HHHHHHHHHHHcCCc-EEEEEecCCC--CCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCce
Q 043456 308 MIKNSEEFYQMLKIP-YQVVAIVSGA--LNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTK 384 (447)
Q Consensus 308 ~~~~~~~i~~~Lgl~-yr~v~~~t~d--lg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~ 384 (447)
+......+++.||+. +|. .++.. -..--..+..+.++.|..++|.||+.|.-+.=---+.++|.+ +
T Consensus 248 LKgvLe~LLr~LG~~~vRF--RPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~---------P 316 (533)
T TIGR00470 248 GKAVAEGLLAQFGFTKFRF--RPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDV---------P 316 (533)
T ss_pred HHHHHHHHHHHhCCceEEe--ccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCC---------c
Confidence 888889999999974 432 23311 011111234666777877789999887744222234455522 2
Q ss_pred eEEEeecccccchhHHHH
Q 043456 385 QYVHLLNSTLTATERTIC 402 (447)
Q Consensus 385 ~~~htlngt~~ai~Rll~ 402 (447)
+ .+.|++++|+..
T Consensus 317 V-----~AFGIGVERlAM 329 (533)
T TIGR00470 317 V-----MNLGLGVERLAM 329 (533)
T ss_pred e-----EEEEecHHHHHH
Confidence 2 256888999863
No 86
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.52 E-value=0.00013 Score=77.78 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEec--CCCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVTG--EGDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~~--~~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.++...+++.+++.+.+.||.+|.||.|.... +| .... |.+.. -+.++||+-+.|..+=.+...-
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~----gga~a~p-----F~t~~~~~~~~~yLriSpELylKrlivgG- 239 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP----GGANARP-----FITHHNALDMDLYLRIAPELYLKRLIVGG- 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC----CCcccee-----EEeecccCCCceEEecCHHHHHHHHHhCC-
Confidence 4567888999999999999999999999997542 23 1222 33221 1357788877665442222111
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
. =|+|++++|||+|-. ++ -+.-||+|.|.| +|..-+ +.++..++++.
T Consensus 240 --~----~rVfeIg~~FRnE~~----~~---rH~pEFTmlE~y~a~~d~~--dlm~~~E~li~ 287 (496)
T TIGR00499 240 --F----EKVYEIGRNFRNEGV----DT---THNPEFTMIEFYQAYADYE--DLMDLTENLFK 287 (496)
T ss_pred --C----CceEEEecceecCCC----CC---cccchhheeehhhhcCCHH--HHHHHHHHHHH
Confidence 1 268999999999943 33 478899999998 443212 36666666654
No 87
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.51 E-value=0.00031 Score=76.03 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEecCCCccccccCCChhHHHHhhccccC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIH 250 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s 250 (447)
.-.+++..+++.+++.+.+.||.+|.||.|.... + | ....|.... ..-+.++||+=+.|..+=.|...-
T Consensus 251 ~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~---G-GA~a~PF~T~~---n~~d~~lYLriSpEL~lKrLlvgG--- 320 (585)
T PTZ00417 251 STFITRTKIINYLRNFLNDRGFIEVETPTMNLVA---G-GANARPFITHH---NDLDLDLYLRIATELPLKMLIVGG--- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC---C-cccceeEEecc---cCCCcceEEeecHHHHHHHHHHhC---
Confidence 3456788999999999999999999999998752 1 2 221221100 011357889877776553333211
Q ss_pred CCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 251 PSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 251 ~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++|+|||+|-. ++ ...-||+|.|.|.--.+ .++.++..+.++.
T Consensus 321 ---~-~rVfeIgp~FRnE~~----~~---rHnpEFTmlE~y~ay~d-y~dlM~l~E~Li~ 368 (585)
T PTZ00417 321 ---I-DKVYEIGKVFRNEGI----DN---THNPEFTSCEFYWAYAD-FYDLIKWSEDFFS 368 (585)
T ss_pred ---C-CCEEEEcccccCCCC----CC---CccceeeeeeeeeecCC-HHHHHHHHHHHHH
Confidence 1 269999999999953 22 46779999999943222 2236665555554
No 88
>PLN02850 aspartate-tRNA ligase
Probab=97.48 E-value=0.00039 Score=74.71 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++...+.+.+++.+.+.||.+|.||.|+.... + | +.+.|.+.--+..+||.-+.+...=.+...
T Consensus 223 aifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~-e--g-----ga~~F~v~yf~~~~~L~qSpql~kq~li~~----- 289 (530)
T PLN02850 223 AIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS-E--G-----GSAVFRLDYKGQPACLAQSPQLHKQMAICG----- 289 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC-c--c-----ccceeeeccCCcceecCCCHHHHHHHHHHh-----
Confidence 45678889999999999999999999999954321 1 2 123566643356788876554432111111
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecC-CcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSP-NGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~-e~~~s~~~~~~~~~ 310 (447)
.+ =|+|++++|||+|-+ .+ + -.+.||+|.|++ .|..+ ++ .++..+.++.
T Consensus 290 -g~-~rVfeIgp~FRaE~s-~t---~--RHl~EFt~Le~Em~~~~~y~e--vm~~~E~ll~ 340 (530)
T PLN02850 290 -DF-RRVFEIGPVFRAEDS-FT---H--RHLCEFTGLDLEMEIKEHYSE--VLDVVDELFV 340 (530)
T ss_pred -cC-CceEEEecccccCCC-CC---C--ccchhhccchhhhhhhcCHHH--HHHHHHHHHH
Confidence 11 279999999999953 22 1 246799999998 66543 23 5555555543
No 89
>PLN02502 lysyl-tRNA synthetase
Probab=97.46 E-value=0.00023 Score=76.68 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEe-cC-CCccccccCCChhHHHHhhcccc
Q 043456 173 GVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVT-GE-GDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 173 ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~-~~-~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
-.++...+++.+++.+.+.||.+|.||.|.... +| .... |... +. +.++||+=+.|..+=.+...-
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----gGA~a~p-----F~t~~n~~~~~~yL~~Spel~lK~L~v~g-- 296 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA----GGAAARP-----FVTHHNDLNMDLYLRIATELHLKRLVVGG-- 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC----CCccccc-----eeeecccCCcceeeecCHHHHHHHHHHhc--
Confidence 346788899999999999999999999997532 23 2222 2221 11 357888877766543333221
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-. ++ .+..||+|.|.| +|+.-++ .++..+.++.
T Consensus 297 ----~-~rVfeIg~~FRnE~~----~~---rH~pEFtmlE~y~a~~d~~d--lm~~~E~li~ 344 (553)
T PLN02502 297 ----F-ERVYEIGRQFRNEGI----ST---RHNPEFTTCEFYQAYADYND--MMELTEEMVS 344 (553)
T ss_pred ----c-CCEEEEcCeeeCCCC----CC---ccccceeehhhhhhcCCHHH--HHHHHHHHHH
Confidence 1 369999999999943 32 588999999998 5543233 6666666654
No 90
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.44 E-value=0.00025 Score=75.70 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEecCCCccccccCCChhHHHHhhccccC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIH 250 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s 250 (447)
.-.++...+++.+++.+.+.||.+|.||.|... . .| ....|.... ..-+.++||+=+.|..+=.+...-
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~---~-gGa~a~pF~t~~---~~~~~~~yL~~SpELylKrlivgG--- 251 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI---P-GGASARPFITHH---NALDLDMYLRIAPELYLKRLVVGG--- 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec---C-CCCcccceeccc---ccCCcceeeecCHHHHHHHHHhcc---
Confidence 356788999999999999999999999999652 1 12 222221100 001346788766655442222111
Q ss_pred CCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 251 PSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 251 ~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-. +--+.-||+|.|.|.--.+ .++.++..+.++.
T Consensus 252 ---~-~rVfeIg~~FRnE~~-------~~rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~ 299 (505)
T PRK12445 252 ---F-ERVFEINRNFRNEGI-------SVRHNPEFTMMELYMAYAD-YHDLIELTESLFR 299 (505)
T ss_pred ---C-CcEEEEehhccCCCC-------CCCcCcccceeeeeeecCC-HHHHHHHHHHHHH
Confidence 1 369999999999942 2247889999999944333 2236666666654
No 91
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.42 E-value=0.00056 Score=72.25 Aligned_cols=115 Identities=20% Similarity=0.319 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEec---------CCCccccccCCChhHHH
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG---------EGDDKYLIATAEQPLCA 242 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~---------~~~~~~L~pTsE~~l~~ 242 (447)
.-.++...+++.+++.+.+.||.+|.||.|..... + |. .+.|.+.. -+..+||.-+.+..+=
T Consensus 134 ~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~-e--g~-----~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq- 204 (453)
T TIGR00457 134 AVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC-E--GA-----GELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLE- 204 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC-C--CC-----CCceEecccccccchhccCCccccccCHHHHHH-
Confidence 45689999999999999999999999999986441 1 11 23344431 1346677766544332
Q ss_pred HhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 243 YHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 243 l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
+.. ..+ =|+|++++|||+|-. +++ -.+-||+|.|.+ +|..-++ .++..+.++.
T Consensus 205 ~l~------~g~-~rVf~i~~~FR~E~~----~t~--rHl~EFt~le~e~~~~~~~d--vm~~~E~lv~ 258 (453)
T TIGR00457 205 TYA------LAL-SKVYTFGPTFRAEKS----NTS--RHLSEFWMIEPEMAFANLND--LLQLAETLIK 258 (453)
T ss_pred HHh------hcc-cCceEeeeccccCCC----CCC--cCcchhccceeeeecCCHHH--HHHHHHHHHH
Confidence 221 112 368999999999954 221 244699999998 5554333 6655555544
No 92
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00058 Score=74.47 Aligned_cols=115 Identities=15% Similarity=0.264 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEecC--CCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.++..++++.+++.+.+.||.+|.||.|.... +| .. ..|.+... +.++||+=+.|..+=.+...-
T Consensus 231 ~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~----~ga~a-----~pF~t~~n~~~~~~yL~~SPELylKrLivgG- 300 (659)
T PTZ00385 231 ETIKKRHVMLQALRDYFNERNFVEVETPVLHTVA----SGANA-----KSFVTHHNANAMDLFLRVAPELHLKQCIVGG- 300 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC----CCCCc-----cceEeecccCCCCEEecCChHHHHHHHhhcc-
Confidence 3556888999999999999999999999996431 22 22 22433211 356788776665443222211
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-. ++ .+.-||+|.|.|.--.+ .++.++..++++.
T Consensus 301 -----~-erVyeIg~~FRnE~~----~~---rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~ 348 (659)
T PTZ00385 301 -----M-ERIYEIGKVFRNEDA----DR---SHNPEFTSCEFYAAYHT-YEDLMPMTEDIFR 348 (659)
T ss_pred -----c-CCEEEEeceecCCCC----CC---CccccccceeeeeecCC-HHHHHHHHHHHHH
Confidence 1 369999999999953 22 37889999999943332 2236666666554
No 93
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.37 E-value=0.0009 Score=72.24 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHH
Q 043456 171 GDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKE 205 (447)
Q Consensus 171 ~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~ 205 (447)
..-.|++.++...+++.+.+.||.+|.||.|+..+
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 35678999999999999999999999999998655
No 94
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.35 E-value=0.00029 Score=70.59 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEec-----CCCccccccCCChhHHHHhhcccc
Q 043456 175 RLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG-----EGDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 175 ~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~-----~~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
+++..+++.+++.+.+.||.+|.||.|.....-+ +... .|.+.- -+...||.-+.|..+=.+...-
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e--~~~~-----~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g-- 72 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVTD--PHLD-----AFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG-- 72 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCC--cCCc-----ceeeeccCCCCCCcceeeecCHHHHHHHHHhcc--
Confidence 4677889999999999999999999998663211 2222 233321 1346788877665443222211
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVV 326 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v 326 (447)
+ =|+|++|+|||+|-+ + --.+-||+|.|.+..-.+ .++.++..+.++ ..+++.+..|+..+
T Consensus 73 ----~-~rVfeigp~FRaE~~--~-----~rHl~EFtmLE~e~~~~d-~~d~m~~~e~li---~~i~~~~~~~~~~i 133 (304)
T TIGR00462 73 ----S-GPIFQICKVFRNGER--G-----RRHNPEFTMLEWYRPGFD-YHDLMDEVEALL---QELLGDPFAPWERL 133 (304)
T ss_pred ----C-CCEEEEcCceeCCCC--C-----CCcccHHHhHHHHHHcCC-HHHHHHHHHHHH---HHHHHhcCCCcEEE
Confidence 2 369999999999964 2 146789999999733222 112444444444 34444455566544
No 95
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.26 E-value=0.00056 Score=73.63 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++..++.+.+++.+.+.||.+|.||.|+... ..|.. +.|.+.--+..+||.-+.+.. -.+...
T Consensus 211 ~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~---~egga-----~~F~v~yf~~~~~L~qSpql~-kq~li~----- 276 (550)
T PTZ00401 211 AIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP---SEGGA-----NVFKLEYFNRFAYLAQSPQLY-KQMVLQ----- 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC---CCccc-----cccccccCCCCeecCCCHHHH-HHHHHh-----
Confidence 3467888999999999999999999999998644 12222 234443224577887655432 222111
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeE-EEEecC-CcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQ-FCITSP-NGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~-~~f~~~-e~~~s~~~~~~~~~ 310 (447)
..+ =|+|++++|||+|-+ .|+ -.+.||+|.|+ +.|..+ ++ .++..+.++.
T Consensus 277 ~g~-~rVfeI~p~FRaE~s----~T~--RHl~EFt~Le~E~~~~~~y~e--vm~~~e~l~~ 328 (550)
T PTZ00401 277 GDV-PRVFEVGPVFRSENS----NTH--RHLTEFVGLDVEMRINEHYYE--VLDLAESLFN 328 (550)
T ss_pred cCC-CCEEEEeCeEeCCCC----CCC--CCccchhhhhhhhHhcCCHHH--HHHHHHHHHH
Confidence 111 369999999999964 222 24569999999 566544 33 6665555554
No 96
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.16 E-value=0.0021 Score=69.48 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHH
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKE 205 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~ 205 (447)
.-.+++.++.+.+++.+.+.||.+|.||.|+..+
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 4578999999999999999999999999998655
No 97
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.14 E-value=0.00048 Score=79.76 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEe--cCCCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVT--GEGDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~--~~~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++..+++.+++.+.+.||.||.||.|.... +| ...- |.+. .-+.++||+=+.|..+=.+...
T Consensus 768 ~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~----gGa~a~p-----F~t~~~~~~~~~yLriSPELylKrLivg-- 836 (1094)
T PRK02983 768 DLLRARSAVVRAVRETLVARGFLEVETPILQQVH----GGANARP-----FVTHINAYDMDLYLRIAPELYLKRLCVG-- 836 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC----CCcccce-----eEeeecCCCccchhhcChHHHHHHHHhc--
Confidence 3467888999999999999999999999997332 12 2222 4221 1145788887766544332211
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
. + =|+|++++|||+|-. ++ -+.-||+|.|.|.--.+ .++.++..++++.
T Consensus 837 -G---~-erVFEIg~~FRnE~~----~~---rHnpEFTmLE~y~a~~d-y~d~m~l~E~li~ 885 (1094)
T PRK02983 837 -G---V-ERVFELGRNFRNEGV----DA---THNPEFTLLEAYQAHAD-YDTMRDLTRELIQ 885 (1094)
T ss_pred -c---c-CceEEEcceecCCCC----CC---CccccccchhhhhhcCC-HHHHHHHHHHHHH
Confidence 1 1 369999999999953 33 37789999999844332 2236666666654
No 98
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0005 Score=72.87 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=61.9
Q ss_pred eeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 354 RELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 354 ~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
.||..+-..+.-.+..++..+.++ +++.++.+ +.|+|++++|++++++|++++++|+.||.+++||. +.+++.+
T Consensus 342 ieVghif~lG~kyse~~~a~v~~r---~g~~~~~~-mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~--~~iv~~n 415 (500)
T COG0442 342 IEVGHIFELGTKYSEAMNATVLDR---DGKEQPKT-MGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFD--VHIVPVN 415 (500)
T ss_pred cccCEEEEECchhhhhCeeEEEec---CCCccceE-EEehhhhhhhHHHHHHHHhcccccCccccccCcce--eEEEEcC
Confidence 677777777766778888888876 45666666 46899999999999999999999999999999999 7777766
No 99
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.10 E-value=0.002 Score=63.83 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCc
Q 043456 175 RLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 175 ~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
++..++++.+++.+.+.||.+|.||.|..... .+.+ .|....+. ..+..|+|.-+.| +|....+.. .+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~-~g~~---~f~~~~~~--~~~~~~~L~~Spq-----l~lk~ll~~-g~ 69 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP-EGAR---DFLVPSRL--HPGKFYALPQSPQ-----LFKQLLMVS-GF 69 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC-CCCC---Cceecccc--CCCceeecccCHH-----HHHHHHHhc-Cc
Confidence 46678889999999999999999999985443 2221 12111110 1123455664333 233322211 11
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
=|+|++++|||+|-... | |-.||+|.|.+.--.+ -++.++..+.++.
T Consensus 70 -~~v~~i~~~fR~e~~~~-----~--r~~Ef~~~e~e~~~~~-~~dlm~~~e~li~ 116 (280)
T cd00777 70 -DRYFQIARCFRDEDLRA-----D--RQPEFTQIDIEMSFVD-QEDIMSLIEGLLK 116 (280)
T ss_pred -CcEEEeccceeCCCCCC-----C--ccceeEEeEeeeccCC-HHHHHHHHHHHHH
Confidence 36899999999997522 2 5569999999843233 2236666666654
No 100
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0025 Score=65.16 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=106.3
Q ss_pred eeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCC-CccccccCCChhHHHHhh
Q 043456 167 FYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEG-DDKYLIATAEQPLCAYHI 245 (447)
Q Consensus 167 y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~-~~~~L~pTsE~~l~~l~~ 245 (447)
-=|-|.-..|++.+.+-+.+...++|+..|.||.+=-++++.+ ..-.-...+|.+.|.| +-..|++---+|++-+.+
T Consensus 67 rD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~g--KYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylA 144 (518)
T KOG1936|consen 67 RDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTG--KYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLA 144 (518)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhh--hcccccceeEehhhcCCcEEEeecccccHHHHHHH
Confidence 3355677889999999999999999999999999988887733 2211125689888874 566899988899998866
Q ss_pred ccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEE
Q 043456 246 DDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQV 325 (447)
Q Consensus 246 ~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~ 325 (447)
-.-+ --++.|+++.+||++.- +-++| |.|||.+-|+=+.-.=++ .. -=.+++++..++|+.|||--..
T Consensus 145 mNki----~sikRy~iAkVyRRd~P---~mtrG--R~REFYQcDFDIAG~~d~--M~-pdaE~lkiv~e~L~~l~Igd~~ 212 (518)
T KOG1936|consen 145 MNKI----TSIKRYHIAKVYRRDQP---AMTRG--RYREFYQCDFDIAGQFDP--MI-PDAECLKIVVEILSRLGIGDYG 212 (518)
T ss_pred Hccc----ccceeeeEEEEEeccCc---hhhch--hhhhhhccCccccccCCC--CC-chHHHHHHHHHHHhhcCccceE
Confidence 4432 24788999999999863 24677 888999877543321111 11 1136788888999999996333
Q ss_pred EEecC
Q 043456 326 VAIVS 330 (447)
Q Consensus 326 v~~~t 330 (447)
+.++.
T Consensus 213 iKvNh 217 (518)
T KOG1936|consen 213 IKVNH 217 (518)
T ss_pred EEecH
Confidence 44443
No 101
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0023 Score=66.34 Aligned_cols=115 Identities=20% Similarity=0.277 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.+++..+...+++.+.+.||.+|.||.|+.... .-+.++|.++--+.+.||.=+.--- ..++.-. +
T Consensus 132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~--------EGg~elF~v~yf~~~a~LtqS~QLy-ke~~~~a-l-- 199 (435)
T COG0017 132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASAT--------EGGGELFKVDYFDKEAYLTQSPQLY-KEALAAA-L-- 199 (435)
T ss_pred HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC--------CCCceeEEEeecCcceEEecCHHHH-HHHHHHH-h--
Confidence 45789999999999999999999999999985542 2334778876434456666543221 1111111 2
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
=|.|.+|++||.|.+ +|+- .+-||+|+|+= +|+.-++ +++..++++.
T Consensus 200 ----~rVf~igP~FRAE~s----~T~R--HL~EF~~ld~Emaf~~~~d--~m~l~E~~i~ 247 (435)
T COG0017 200 ----ERVFTIGPTFRAEKS----NTRR--HLSEFWMLDPEMAFADLND--VMDLAEELIK 247 (435)
T ss_pred ----CceEEecCceecCCC----CCcc--hhhhHheecceeccCcHHH--HHHHHHHHHH
Confidence 268999999999986 3331 58899999884 5666434 6665555544
No 102
>PLN02532 asparagine-tRNA synthetase
Probab=96.94 E-value=0.0023 Score=69.66 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHH
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKE 205 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~ 205 (447)
.-.+++..+...+++.+.+.||.+|.||.|+..+
T Consensus 233 ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 233 SVTRVRSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 4678999999999999999999999999997665
No 103
>PLN02603 asparaginyl-tRNA synthetase
Probab=96.81 E-value=0.0062 Score=65.81 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-------------------------
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE------------------------- 226 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~------------------------- 226 (447)
.-.+++.++...+++.+.+.||.+|.||.|...+. ++.| ++|.++.-
T Consensus 224 ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~-EGA~-------e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~ 295 (565)
T PLN02603 224 AVARVRNALAYATHKFFQENGFVWVSSPIITASDC-EGAG-------EQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDW 295 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecccCC-Cccc-------cCceeeeccccccccccccccccccCccccccc
Confidence 45689999999999999999999999999985431 2222 33433210
Q ss_pred -----CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcch
Q 043456 227 -----GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGND 300 (447)
Q Consensus 227 -----~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~ 300 (447)
+...||.-+..- +-.++.. .| =++|++++|||+|-+ +|. -.+-||+|+|.. +|+.-++
T Consensus 296 ~~dyF~~~~~LtvS~QL-~~E~~~~------~l-~rVy~igp~FRaE~s----~T~--RHL~EF~mlE~E~af~dl~d-- 359 (565)
T PLN02603 296 SQDFFGKPAFLTVSGQL-NGETYAT------AL-SDVYTFGPTFRAENS----NTS--RHLAEFWMIEPELAFADLND-- 359 (565)
T ss_pred chhhhCcceeeccCchH-HHHHHHh------cc-cceEEEecceeCCCC----CCc--cccccceeeeeeeecCCHHH--
Confidence 112233332211 1111111 12 368999999999965 332 245799999998 4653233
Q ss_pred HHHHHHHHH
Q 043456 301 SWDMHEEMI 309 (447)
Q Consensus 301 s~~~~~~~~ 309 (447)
.+...+.++
T Consensus 360 ~m~~~E~~l 368 (565)
T PLN02603 360 DMACATAYL 368 (565)
T ss_pred HHHHHHHHH
Confidence 554444333
No 104
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.74 E-value=0.016 Score=57.28 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEec-CCCccccccCCChhHHHHhhccccCCCCc
Q 043456 176 LNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG-EGDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 176 l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~-~~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
-.+.+++-+.+.+.++||.+|.||.+=..+++...+.... ....+.+.+ +|+.+.|+|-.-.|++-+++... .-
T Consensus 9 ~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~-~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~----~~ 83 (272)
T PRK12294 9 ALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQ-QMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP----TA 83 (272)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchh-hhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC----CC
Confidence 3467777888888999999999999988887644332111 122344544 46889999977789998876542 24
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeee--eeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEK--VEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k--~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
|.|++-++++||.+. +|++ +|++. .... +. .+.+..+.+.++.+|+.
T Consensus 84 ~~Rl~Y~g~VfR~~~--------------~~~Q~GvEliG--~~~~--a~---~e~l~la~~~l~~~g~~ 132 (272)
T PRK12294 84 ATKVAYAGLIIRNNE--------------AAVQVGIENYA--PSLA--NV---QQSFKLFIQFIQQQLRD 132 (272)
T ss_pred CceEEEeccEeccCC--------------CcceeceEEEC--CCch--hH---HHHHHHHHHHHHHhCCC
Confidence 679999999999873 1444 56664 2122 22 44457777888888543
No 105
>PLN02788 phenylalanine-tRNA synthetase
Probab=96.54 E-value=0.14 Score=53.16 Aligned_cols=184 Identities=13% Similarity=0.167 Sum_probs=101.5
Q ss_pred HHHHHHHC---CCeEec--CCccCcHHHHHHhC----CcCCCcCccEEEecCCCcccccc-CCChhHHHHhhccccCCCC
Q 043456 184 GLDFLEKK---SYTLLH--TPFFMRKEVMAKCA----QLAQFDEELYKVTGEGDDKYLIA-TAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 184 ~~~~~~~~---G~~~v~--~P~l~~~~~~~~~G----~~~~~~~~lf~i~~~~~~~~L~p-TsE~~l~~l~~~~~~s~~~ 253 (447)
+.+.+.+. ||+.+. .|..-...-+..-+ |...-..+.|.+++ ++.|+. |+-+..-.|.+.
T Consensus 77 i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~---~~lLRTHTSa~q~~~l~~~------- 146 (402)
T PLN02788 77 IYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDA---QTVLRCHTSAHQAELLRAG------- 146 (402)
T ss_pred HHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecC---CccccCCCcHHHHHHHHhC-------
Confidence 33344444 999998 45444333333333 22223346677743 678887 776655555432
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcc------hHHHHHHHHHHHHHHHHHHc-CCc-EEE
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGN------DSWDMHEEMIKNSEEFYQML-KIP-YQV 325 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~------~s~~~~~~~~~~~~~i~~~L-gl~-yr~ 325 (447)
.| ++...|.|||++.-.+ ....+|.++|.+.....++- +..-.+..+....+.+++.| |+. +|.
T Consensus 147 ~~-~~~~~g~VyRrD~iD~-------tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~~~~r~ 218 (402)
T PLN02788 147 HT-HFLVTGDVYRRDSIDA-------THYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGDVEMRW 218 (402)
T ss_pred CC-cEEEEeeEeecCCCCc-------ccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcCCCceEE
Confidence 23 8999999999986311 15679999999887643210 01123566777777888877 763 332
Q ss_pred EEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHH
Q 043456 326 VAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCI 404 (447)
Q Consensus 326 v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~al 404 (447)
.++- ..+ -.....+++|.. +.|.|+..|...---..+.+++. .+..+ +.|++++|+....
T Consensus 219 --~~s~-fPf-t~Ps~e~dI~~~--g~WlEvlG~G~vhP~Vl~~~gi~--------~~~g~-----AfglgLeRLaml~ 278 (402)
T PLN02788 219 --VDAY-FPF-TNPSFELEIFFK--GEWLEVLGCGVTEQEILKNNGRS--------DNVAW-----AFGLGLERLAMVL 278 (402)
T ss_pred --ecCC-CCC-CCCCeEEEEEEC--CEEEEEeeEEEEcHHHHHHcCCC--------CCcEE-----EEEEeHHHHHHhh
Confidence 2211 111 123344556654 46999866542211113444441 11112 4577899997655
No 106
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0039 Score=60.83 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHHHHhhccccCCC
Q 043456 174 VRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPS 252 (447)
Q Consensus 174 a~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~ 252 (447)
.....++++-++..+..+||.||.||.|....+-+. |+..|..+.+...+. +..+||.++-|..+--|.+...
T Consensus 16 ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~--hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~---- 89 (322)
T COG2269 16 LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDI--HLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGS---- 89 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCcc--ceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccC----
Confidence 344566777788888899999999999865443222 555665554433222 3578999888877765555433
Q ss_pred CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC
Q 043456 253 ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296 (447)
Q Consensus 253 ~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~ 296 (447)
-.+||+++|||++- .| =+.--||||.|=|...-+
T Consensus 90 ---~~ifql~kvfRN~E--~G-----~~H~PEFTMLEWYrv~~d 123 (322)
T COG2269 90 ---GPIFQLGKVFRNEE--MG-----RLHNPEFTMLEWYRVGCD 123 (322)
T ss_pred ---CcchhhhHHHhccc--cc-----ccCCCceeEeeeeccCCc
Confidence 24789999999963 23 334459999999865544
No 107
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.012 Score=61.73 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCC
Q 043456 174 VRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 174 a~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~ 253 (447)
...+-.+++.+++.+...||.||.||.|-.-. -|. ...-|...+=.+ +-++||+=..|-.+--+.-+-
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~--GGA-~ArPF~ThhNal---d~dlyLRIApELyLKRliVGG------ 247 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPIP--GGA-AARPFITHHNAL---DMDLYLRIAPELYLKRLIVGG------ 247 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEeccccccccC--CCc-ccccceeeeccc---CCceEEeeccHHHHHHHHhcC------
Confidence 34566788999999999999999999985321 111 111222111011 347888877776554333221
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML 319 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L 319 (447)
+ =|+|+++++||+| |-+++ .--||+|.|.| + +..-|+.+....+++++.+
T Consensus 248 ~-erVfEIgr~FRNE----Gid~t---HNPEFTmlE~Y------~--AYaDy~D~m~ltE~Li~~~ 297 (502)
T COG1190 248 F-ERVFEIGRNFRNE----GIDTT---HNPEFTMLEFY------Q--AYADYEDLMDLTEELIKEL 297 (502)
T ss_pred c-hhheeeccccccC----CCccc---cCcchhhHHHH------H--HHhHHHHHHHHHHHHHHHH
Confidence 1 2789999999999 33322 34599999988 5 7777888888888887654
No 108
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.30 E-value=0.23 Score=54.02 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHH-HHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCC
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEV-MAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~-~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~ 253 (447)
.+.+.+-+++.|...||+|+.+..+++.+. +..-|..+. .....+.+. .+.-+|+++-=+++....+... .+.
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~--~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~--~~~ 436 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPE--EDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK--HRE 436 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCC--CCeEEEcCCCccchheEeccchHHHHHHHHhcc--CCC
Confidence 455666778889999999999999999966 655442211 024566543 3445888887777766655544 456
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEE
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQV 325 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~ 325 (447)
.|++++++|+||+.+.. + .+ ..+|+.+.-.. ++.. . . .|..+....+.++..||+++..
T Consensus 437 ~~~~lFEiG~Vf~~~~~--~-~~----~~~e~~~l~~~-~~g~-~--~--df~dlKg~ve~ll~~lgi~~~~ 495 (552)
T PRK09616 437 YPQKIFEIGDVVLIDES--T-ET----GTRTERKLAAA-IAHS-E--A--SFTEIKSVVQALLRELGIEYEV 495 (552)
T ss_pred CCeeEEEeeEEEecCCc--c-cc----CcchhhEEEEE-EECC-C--C--CHHHHHHHHHHHHHHcCCeEEE
Confidence 79999999999987531 1 11 23566655544 3332 2 2 2788888999999999997543
No 109
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.044 Score=56.82 Aligned_cols=127 Identities=19% Similarity=0.286 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCC
Q 043456 175 RLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPS 252 (447)
Q Consensus 175 ~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~ 252 (447)
+.+-.+|.|++.++...||.||.||.|--. .|-.. ..=|..... +.++||+=.-|--+-.|.-+-.
T Consensus 226 ~~RakII~~iRkfld~rgFlEVETPmmn~i-----aGGA~---AkPFIT~hndldm~LylRiAPEL~lK~LvVGGl---- 293 (560)
T KOG1885|consen 226 RIRAKIISYIRKFLDSRGFLEVETPMMNMI-----AGGAT---AKPFITHHNDLDMDLYLRIAPELYLKMLVVGGL---- 293 (560)
T ss_pred HHHHHHHHHHHHHhhhcCceEecchhhccc-----cCccc---cCceeecccccCcceeeeechHHHHHHHHhccH----
Confidence 445678999999999999999999997421 12110 011211111 3468888766665544433322
Q ss_pred CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc----CCcEEEEEe
Q 043456 253 ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML----KIPYQVVAI 328 (447)
Q Consensus 253 ~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L----gl~yr~v~~ 328 (447)
=|+|++|+.||+| |.| +-.--||+.-|+| + +..-|+.+.++.+.+++.+ .=.|.+..-
T Consensus 294 ---drVYEIGr~FRNE----GID---lTHNPEFTTcEfY------~--AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~ 355 (560)
T KOG1885|consen 294 ---DRVYEIGRQFRNE----GID---LTHNPEFTTCEFY------M--AYADYEDLMDMTEELLSGMVKNITGSYKITYH 355 (560)
T ss_pred ---HHHHHHHHHhhhc----Ccc---cccCCCcchHHHH------H--HHhhHHHHHHHHHHHHHHHHHhhcCceeEeec
Confidence 2689999999999 444 3456688888877 3 4445566666666665533 224665555
Q ss_pred cCC
Q 043456 329 VSG 331 (447)
Q Consensus 329 ~t~ 331 (447)
+.+
T Consensus 356 p~~ 358 (560)
T KOG1885|consen 356 PNG 358 (560)
T ss_pred CCC
Confidence 544
No 110
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=94.03 E-value=3.4 Score=43.62 Aligned_cols=107 Identities=10% Similarity=0.133 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHH----HCCCeEecC--CccCcHHHHHHhC----CcCCCcCccEEEecCCCcccccc-CCChhHHH
Q 043456 174 VRLNQALINFGLDFLE----KKSYTLLHT--PFFMRKEVMAKCA----QLAQFDEELYKVTGEGDDKYLIA-TAEQPLCA 242 (447)
Q Consensus 174 a~l~~aL~~~~~~~~~----~~G~~~v~~--P~l~~~~~~~~~G----~~~~~~~~lf~i~~~~~~~~L~p-TsE~~l~~ 242 (447)
..+...|++++..... .-||..+.. |......-+..-+ |...-..+-|.++ ++++|+. ||-+.+-.
T Consensus 45 ~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~---~~~lLRTHTSa~q~~~ 121 (460)
T TIGR00469 45 GIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN---EQHLLRAHTSAHELEC 121 (460)
T ss_pred HHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec---CCceeCCCCcHHHHHH
Confidence 4566677777655421 127888777 8555555555554 2333345667774 3678887 77665444
Q ss_pred HhhccccCCCCcCeE--eeccccccccCc-cCCCCCCcCceeeeeeeeeeEEEEe
Q 043456 243 YHIDDWIHPSELPIR--YAGYSSCFRKEA-GSHGRDTLGIFRVHQFEKVEQFCIT 294 (447)
Q Consensus 243 l~~~~~~s~~~LPlr--l~~~s~~fR~E~-~~~G~~~~GL~R~~qF~k~e~~~f~ 294 (447)
|-+.. -. .-|++ +...|.|||++. .+. ....|.++|...+.
T Consensus 122 ~~~~~-~~--~~~~~~~~i~~G~VYRrD~iDat--------H~p~FHQ~EG~~v~ 165 (460)
T TIGR00469 122 FQGGL-DD--SDNIKSGFLISADVYRRDEIDKT--------HYPVFHQADGAAIR 165 (460)
T ss_pred HHhcc-cc--CCCcceeeEeecceeeCCCCccc--------cCccceeeEEEEEe
Confidence 43221 10 14888 888899999875 321 34578888854433
No 111
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.16 Score=51.96 Aligned_cols=121 Identities=20% Similarity=0.298 Sum_probs=75.2
Q ss_pred eccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--------CCccccccCCChhH
Q 043456 169 LKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--------GDDKYLIATAEQPL 240 (447)
Q Consensus 169 l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--------~~~~~L~pTsE~~l 240 (447)
..+.-+|++.++..=..+.+.+++|+.|.+|.|...+. ++.| +||.++.. ++.-||.-...-.+
T Consensus 127 ~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC-EGaG-------E~F~vtt~~d~~~~fFg~p~fLTVSgQLhl 198 (446)
T KOG0554|consen 127 KVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC-EGAG-------EVFQVTTLTDYSKDFFGRPAFLTVSGQLHL 198 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC-CCCc-------ceEEEEecCcccccccCCceEEEEeceehH
Confidence 44577899999998888899999999999999987652 2222 67776421 23344444333222
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeE-EEEecC-Cc--chHHHHHHHHHHH
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQ-FCITSP-NG--NDSWDMHEEMIKN 311 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~-~~f~~~-e~--~~s~~~~~~~~~~ 311 (447)
-.|.... =+.|.+|++||+|.+.. .| .+-||.|+|. ++||.. ++ ..+++++..|++.
T Consensus 199 E~~a~~L--------srvyTfgP~FRAEnS~t---sR---HLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~ 259 (446)
T KOG0554|consen 199 EAMACAL--------SRVYTFGPTFRAENSHT---SR---HLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKY 259 (446)
T ss_pred HHHHhhh--------cceEeeccceecccCCc---hh---HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 25788999999996521 12 4668999987 466652 11 2244455555543
No 112
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.71 E-value=0.85 Score=42.59 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCCcCe
Q 043456 179 ALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSELPI 256 (447)
Q Consensus 179 aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~LPl 256 (447)
.+.+-+++.|...||.|+.+..+++.+..+.-+ ++ ..+...+.+. .+.-+|++|-=+++....+.. .+....|+
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~-~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N-~~~~~~~~ 79 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFD-GG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARN-LNRKNKPL 79 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhcc-CC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHH-hcCCCCCE
Confidence 445567888899999999999999997665442 11 1234555543 234478887655555544443 34556899
Q ss_pred EeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHH------HHHHHHHHHHHHHHHHcCCc
Q 043456 257 RYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSW------DMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 257 rl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~------~~~~~~~~~~~~i~~~Lgl~ 322 (447)
+++++|++|..... ..+|.... ...+|......+| ..|..+....+.++..+|++
T Consensus 80 ~lFEiG~vf~~~~~----------~~~e~~~l-~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~ 140 (198)
T cd00769 80 RLFEIGRVFLKDED----------GPEEEEHL-AALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGII 140 (198)
T ss_pred eEEEeEeEEecCCC----------CCcchheE-EEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCe
Confidence 99999999965321 01233222 1233332110111 14788899999999999974
No 113
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=93.49 E-value=0.19 Score=51.06 Aligned_cols=65 Identities=12% Similarity=0.282 Sum_probs=41.7
Q ss_pred ccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-EE
Q 043456 248 WIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-YQ 324 (447)
Q Consensus 248 ~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr 324 (447)
++...++|++|+++-+|||+|.+ -|..-|+.-|.-.. +. -+++ -+ .+.=...++.++.+||+. |+
T Consensus 200 i~~r~~~PlklFSIDRCFRREQ~---ED~shLmtYhSASC---Vv--vde~-vt---vD~GKaVAEglL~qfGFe~F~ 265 (536)
T COG2024 200 ILKREDPPLKLFSIDRCFRREQR---EDASHLMTYHSASC---VV--VDED-VT---VDDGKAVAEGLLRQFGFEKFR 265 (536)
T ss_pred HHhccCCCceeeehhHHhhhhhh---cchhhhhhhccceE---EE--EcCc-cc---ccccHHHHHHHHHHhCcccee
Confidence 45567899999999999999986 36565666655432 22 2222 01 112233567889999996 44
No 114
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.92 E-value=0.92 Score=47.72 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVS 119 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g 119 (447)
.+-+.++.+-+.|+++.+.+..+|.+.... ...++.++..+|++++..+...+..+..+|.. +..-|+..+.+.|+|
T Consensus 80 ~~N~~l~~eN~~L~~r~~~id~~i~~av~~--~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~~d~P~G 156 (472)
T TIGR03752 80 SENEALKAENERLQKREQSIDQQIQQAVQS--ETQELTKEIEQLKSERQQLQGLIDQLQRRLAG-VLTGPSGGGSDLPVG 156 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCCCCCCCCCcc
Confidence 333333344444444444444444443322 12345556666777777777666666666654 233355777888887
No 115
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.80 E-value=1 Score=41.08 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAW 98 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~ 98 (447)
-+++..+|.+..+++.++.+|+.+.+.+..+++.+.... ..++|..++.++++++..++..+..+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998887654 345566677777777666666666554
No 116
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.08 E-value=1.1 Score=38.77 Aligned_cols=59 Identities=14% Similarity=0.305 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKE 91 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le 91 (447)
..|..++.+...++.++..|.++|+.++.+|-.+....++.....++...|+.++++|+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888999999999999999988777654333333333344444444433
No 117
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=91.54 E-value=0.11 Score=45.45 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=24.5
Q ss_pred HHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 405 LENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 405 lE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+|++.++.|++||..++||+ +.++|.+
T Consensus 10 iE~~~d~~Gl~~P~~iAP~q--V~Iipi~ 36 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYK--VAIDCGK 36 (128)
T ss_pred hhcCCCCcEEECCCCCCCeE--EEEEecc
Confidence 48888999999999999999 8899885
No 118
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.44 E-value=2.3 Score=40.29 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQ 62 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~ 62 (447)
...+.+.+-+++.+++++.++..++-++
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~e 157 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKE 157 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 119
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.30 E-value=0.4 Score=49.00 Aligned_cols=104 Identities=20% Similarity=0.400 Sum_probs=64.9
Q ss_pred cceeeccHH----HHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhH
Q 043456 165 RGFYLKGDG----VRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240 (447)
Q Consensus 165 g~y~l~~~g----a~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l 240 (447)
|-..+.|.- .+++-++.+-+++.....||++|.+|.||-..+=- +..||+++--|++-||--+|.
T Consensus 230 rHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEG--------GsTLFkldYyGEeAyLTQSSQ--- 298 (545)
T KOG0555|consen 230 RHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEG--------GSTLFKLDYYGEEAYLTQSSQ--- 298 (545)
T ss_pred ceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecC--------cceEEeecccCchhhccchhH---
Confidence 334455443 35566778888999999999999999999665432 235555543334444444332
Q ss_pred HHHhhccccCCCCcC--eEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE
Q 043456 241 CAYHIDDWIHPSELP--IRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC 292 (447)
Q Consensus 241 ~~l~~~~~~s~~~LP--lrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~ 292 (447)
||-... || =..|+|+..||.|.+. ..| .+-||+.||.-+
T Consensus 299 --LYLEtc-----lpAlgdvy~I~~SyRAEkSr---TRR---HLsEytHVEaE~ 339 (545)
T KOG0555|consen 299 --LYLETC-----LPALGDVYCIQQSYRAEKSR---TRR---HLSEYTHVEAEC 339 (545)
T ss_pred --HHHHHh-----hhhcCceeEecHhhhhhhhh---hhh---hhhhheeeeeec
Confidence 222211 12 1378999999999862 222 466999999753
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.11 E-value=2.4 Score=41.52 Aligned_cols=73 Identities=14% Similarity=0.323 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
+++-.+.++...++.+++.|..+...++.++....+ ++.++.++++.++.+|+.+++.+..-.+-|...+.++
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~---~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK---EIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666667777777777777666655443 4566778888888888888888888888777777654
No 121
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.66 E-value=0.31 Score=49.96 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCc
Q 043456 175 RLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 175 ~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
++.-.+...+++.|...||.+|.||-|+... ..-+.++|.++--+..-||.-+ -.||+...+- .|
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~as--------SEGGanvF~v~Yfk~~A~LAQS-----PQLyKQMaI~-gd- 293 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGAS--------SEGGANVFRVSYFKQKAYLAQS-----PQLYKQMAIC-GD- 293 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceeccccccccc--------CCCCceeEEEEeccCcchhhcC-----hHHHHHHHHh-cc-
Confidence 4666778889999999999999999987433 3445678888532233344431 1233332220 01
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeE
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQ 290 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~ 290 (447)
=-|.|++|++||.|-+ .|+- .+.||.-.|+
T Consensus 294 f~rVyeIGpVfRAEdS----nthR--hltEFvGLD~ 323 (533)
T KOG0556|consen 294 FERVYEIGPVFRAEDS----NTHR--HLTEFVGLDL 323 (533)
T ss_pred hhheeeecceeecccc----chhh--hhHHhhCcch
Confidence 1368999999999975 3331 4567766554
No 122
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=90.01 E-value=4 Score=44.48 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHH-HHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCC
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVM-AKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~-~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~ 253 (447)
.+.+.+-+++.+...||+|+.+-.|++.+.. +.-|. + .++...+.+. .+.-+|++|-=+++....+... ...
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~-~--~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~--~~~ 438 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI-E--DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK--HHE 438 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhcc-C--CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc--cCC
Confidence 4556666788899999999999999998654 44332 2 1233555543 2344888877666655544444 567
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEE
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQV 325 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~ 325 (447)
.|++++++|.+|....+ + + .+.++|...-. .++.. . + -|..+....+.++..||+++..
T Consensus 439 ~~~~lFEiG~Vf~~~~~--~-~----~~e~~~~~l~~-~~~g~-~--~--df~d~Kg~ve~ll~~l~i~~~~ 497 (551)
T TIGR00471 439 LPQKIFEIGDVVVKDDK--S-E----TRSRVVTKLAV-GITHS-E--A--NFNEIKSIVAALARELGIEYEI 497 (551)
T ss_pred CCeeEEEEEEEEEcCCc--c-c----cccceeeEEEE-EEECC-C--C--CHHHHHHHHHHHHHHcCCceEE
Confidence 89999999999954211 1 1 13444443222 22222 2 2 2788899999999999997543
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.61 E-value=4.9 Score=38.05 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS-GKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~-~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
..+.+-.+.++..+++.++++++.+.++...++.+...+ .....+|.++-.+|++++..+..+...++.++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777666555554432221 11123345555555555555555544444443
No 124
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.24 E-value=8.9 Score=36.96 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEM----VTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l----~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
..+-.-..-..++..+.+.|..+|.....++.+...+-...+.+ ..+-...++.+..+..++..+.++++.....
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455666677777777777777666554433222222 2333446666777777777788877777666
No 125
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=85.67 E-value=18 Score=29.60 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------h----hHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD---------------F----SEMVTKTNEIKQQSADKE 91 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~---------------~----~~l~~~~~~lk~~i~~le 91 (447)
.+.++..+..++..+..++..+..+++.+...+..+..-.++ . ..|..+...+..+|+.++
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888877766666553322 1 235556666666677776
Q ss_pred HHHHHHHHHHHHH
Q 043456 92 VEVREAWAAVKAK 104 (447)
Q Consensus 92 ~~~~~~~~~l~~~ 104 (447)
.+...+++++...
T Consensus 83 ~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 83 KQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 126
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.61 E-value=8.9 Score=37.65 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
.++.+++.+++..+..|+.+-..+.+.+...-.++-++
T Consensus 224 ~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 224 KEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777777766665555544
No 127
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.26 E-value=7.4 Score=36.29 Aligned_cols=65 Identities=17% Similarity=0.313 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK---DFSEMVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~---~~~~l~~~~~~lk~~i~~le~~~~~~ 97 (447)
+....+..+...++.+++.++.++..+..+|...+.... ++..+.++..+|+++++.|+.++..+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888999999999999999999988765443 33456667777777777776666533
No 128
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.01 E-value=6.3 Score=38.30 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVH 113 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h 113 (447)
++-.++++...+..+++++..+...+...+.++.+ -...+.+++..|+.++.+++.....+.--+...+-.|=.++.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~---~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLER---QVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555444433322 123345566667777777776666666666777777777788
Q ss_pred CCCCCCCC
Q 043456 114 DSVPVSND 121 (447)
Q Consensus 114 ~~vP~g~~ 121 (447)
.++|+-.+
T Consensus 120 ~d~Pf~~~ 127 (251)
T PF11932_consen 120 LDLPFLLE 127 (251)
T ss_pred cCCCCChH
Confidence 89997653
No 129
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.81 E-value=15 Score=28.78 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
...|.+-|++..+|+.+.+.|....-..+..|.++...- .++-.++..+++++..++.++..+++.+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~---~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKI---KELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777888888877777777776676665432 2233456666666666666666666554
No 130
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=84.27 E-value=9.7 Score=34.38 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADK 90 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~l 90 (447)
.+.-.+..+++.++.+.+...++|..++++..+.++|.+++..|+.+.++.
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~ 70 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTA 70 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 344455677788888888888888888887778888888888888888733
No 131
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.22 E-value=6.2 Score=38.18 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
-++..++++.+++..++..++.+.+....+++
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666553
No 132
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=84.15 E-value=5.4 Score=42.74 Aligned_cols=117 Identities=12% Similarity=0.200 Sum_probs=66.7
Q ss_pred ccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHH
Q 043456 229 DKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEM 308 (447)
Q Consensus 229 ~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~ 308 (447)
.-+|+++-=.++..-.+. .++....|++++++|+|||.+.. + +.. ++..+..... +..++. . .|..+
T Consensus 183 ~svLRtSLlPGLL~tLs~-Nl~Rg~~piRLFEIGRVFr~d~~--e-E~t---~La~llsGs~--W~~~e~--v--DFfDl 249 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSS-LLEKRPLPIKLFSIDRCFRREQR--E-DAS---RLMTYHSASC--VIADED--V--TVDDG 249 (529)
T ss_pred cCccccchHHHHHHHHHH-HHhCCCCCEEEEEEeeEEecCCc--c-chh---heeEEEEccc--cccCCC--C--CHHHH
Confidence 447777654544333322 23457899999999999988642 1 211 2222222211 222222 2 27888
Q ss_pred HHHHHHHHHHcCCc-EEEEEecC--CCCCcccccccceeeeecCCCceeeEEEec
Q 043456 309 IKNSEEFYQMLKIP-YQVVAIVS--GALNDAAAKKLDLEAWFPASQTYRELVSCS 360 (447)
Q Consensus 309 ~~~~~~i~~~Lgl~-yr~v~~~t--~dlg~~a~~~~diE~w~p~~~~~~ev~s~s 360 (447)
....+.++..||++ ++.. ++ ..-...-.+..++.+|.|..++|.+|+.+.
T Consensus 250 KGiLE~LL~~LGI~~i~f~--pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fG 302 (529)
T PRK06253 250 KAVAEGLLSQFGFTKFKFR--PDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFG 302 (529)
T ss_pred HHHHHHHHHHcCCCeEEEe--ecccCCCCcCCCeEEEEEEEeecCCCCEEEEEEE
Confidence 88999999999997 4432 21 111112234556777778776777777654
No 133
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.70 E-value=15 Score=33.53 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
.+....+++++..++.+...+......+-...+++..|++
T Consensus 104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 104 EEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 3444555666666666666666666666666666665555
No 134
>PRK11637 AmiB activator; Provisional
Probab=83.61 E-value=9.2 Score=40.19 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
..+..++..+.++|..++.++...++.+...+
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666555555554444
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.36 E-value=12 Score=39.03 Aligned_cols=36 Identities=6% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
.++..-...++.+.+.+++...|++++.+++..|-+
T Consensus 418 kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 418 KLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 455556667888888999999999999999977654
No 136
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.30 E-value=13 Score=33.09 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
++...++++..+++.+...|..+.-.+..++..++..-++.+.....+..|...|..||.++...+..+....
T Consensus 28 ~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 28 QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666655543333333344455677777777777777766665544
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.90 E-value=11 Score=36.42 Aligned_cols=68 Identities=15% Similarity=0.328 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
.++++|..+++.++.+++.+..++..+... .+.+..+...++.++..++..+..+++.+...+..|+-
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~---~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEE---IEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444331 23344455555555555555555555555555555443
No 138
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=82.20 E-value=1.6 Score=44.35 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=62.2
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGAL 333 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dl 333 (447)
-|.||+.|-++||+|+-. -..+-||.+||.++....-. +-.++....++|..+|+.--- -.|+..-
T Consensus 332 ~p~K~FSIDrVFRNEtvD-------aTHLAEFHQVEGviad~glt------LgdLig~l~~ff~~lg~tnlr-fKPaynp 397 (483)
T KOG2784|consen 332 KPAKYFSIDRVFRNETVD-------ATHLAEFHQVEGVIADKGLT------LGDLIGILMEFFTKLGATNLR-FKPAYNP 397 (483)
T ss_pred Ccccccchhhhhhccccc-------hHHHHHHhhhceeeecCCCc------HHHHHHHHHHHHhccCCcccc-ccCCCCC
Confidence 499999999999999852 12567999999998777644 667788889999999874211 1222211
Q ss_pred Ccccccccceeee--ecCCCceeeEEEecccchhhhhh
Q 043456 334 NDAAAKKLDLEAW--FPASQTYRELVSCSNCTDYQSRR 369 (447)
Q Consensus 334 g~~a~~~~diE~w--~p~~~~~~ev~s~sn~~D~qs~r 369 (447)
+-.-++|++ -.+-..|.||+.. +-|-+.+
T Consensus 398 ----Ytepsmeif~yh~gl~kwvEvgnS---g~frPem 428 (483)
T KOG2784|consen 398 ----YTEPSMEIFSYHHGLFKWVEVGNS---GMFRPEM 428 (483)
T ss_pred ----CCCceeEEEEeccccceEEEEcCC---CCCCHhH
Confidence 111134444 4555678887554 4454554
No 139
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.70 E-value=26 Score=30.16 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------Chh----HHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK---------------DFS----EMVTKTNEIKQQSADKEV 92 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~---------------~~~----~l~~~~~~lk~~i~~le~ 92 (447)
+.++-.+-++...+..+...+....+.+...+..+..-.+ +.+ .+..+...+..+|+.|++
T Consensus 13 ~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lek 92 (121)
T PRK09343 13 LAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEK 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665544444333211 222 344555566666666666
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCCCCC
Q 043456 93 EVREAWAAVKAKLEVVGNLVHDSVPV 118 (447)
Q Consensus 93 ~~~~~~~~l~~~~~~lPN~~h~~vP~ 118 (447)
+...+++++.+.-..|=.+...-.|.
T Consensus 93 q~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 93 QEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66666666655544444443333333
No 140
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=81.55 E-value=31 Score=29.73 Aligned_cols=85 Identities=11% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------------hhHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD-------------------FSEMVTKTNEIKQQSADKEVE 93 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~-------------------~~~l~~~~~~lk~~i~~le~~ 93 (447)
.++-.|.++.-.+..+..++.+..+.+.+....+-+-.+| .++|..+...|..+++.|+.+
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQ 92 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555444333221111 134556666677777777777
Q ss_pred HHHHHHHHHHHHHhcCCCcCCCCC
Q 043456 94 VREAWAAVKAKLEVVGNLVHDSVP 117 (447)
Q Consensus 94 ~~~~~~~l~~~~~~lPN~~h~~vP 117 (447)
...+.+++..+=..|=...++..+
T Consensus 93 e~~l~e~l~eLq~~i~~~l~~~~~ 116 (119)
T COG1382 93 EEKLQERLEELQSEIQKALGDAAN 116 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 777777777666655555555444
No 141
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=81.45 E-value=36 Score=29.70 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=53.7
Q ss_pred hhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 24 RRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 24 ~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
-||++ -++|+.|-+++|.|+++--...-+...+..+-. +-+ +...|.+++..|+.+...+-.++..++.....
T Consensus 41 LrG~~---reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~e-LE~---~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 41 LRGLS---REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHE-LEK---EKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred hcCCC---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34655 368999999999999987776666555554322 111 12457778888888888888888888887777
Q ss_pred HHHh
Q 043456 104 KLEV 107 (447)
Q Consensus 104 ~~~~ 107 (447)
+...
T Consensus 114 l~~~ 117 (135)
T KOG4196|consen 114 LQNS 117 (135)
T ss_pred HHhh
Confidence 6654
No 142
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.33 E-value=21 Score=33.35 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
.++..++.....+++++..++-++...+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666554
No 143
>PRK11637 AmiB activator; Provisional
Probab=81.26 E-value=13 Score=38.96 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~ 97 (447)
+.+++..++++|..+++.+...
T Consensus 108 l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 144
>PRK11546 zraP zinc resistance protein; Provisional
Probab=79.80 E-value=44 Score=29.77 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
-++--.++..+.+-..+...||.+...-.-++..+.......+ +.++.+.+||.+|..++.+..-+++..+.+.
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~---~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~--- 119 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS---SKINAVAKEMENLRQSLDELRVKRDIAMAEA--- 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 3566667777777788888888888887778877765543222 2466777788888888877777777777663
Q ss_pred cCCCCCCCC
Q 043456 112 VHDSVPVSN 120 (447)
Q Consensus 112 ~h~~vP~g~ 120 (447)
-||-|.
T Consensus 120 ---Gv~~g~ 125 (143)
T PRK11546 120 ---GIPRGA 125 (143)
T ss_pred ---CCCccc
Confidence 777664
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.78 E-value=21 Score=35.12 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+...|.++..++.+...++.+...+..+|...... ..++.+++.+++.+|+.|+.++..+++.|.+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k---~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK---IDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777665442 35577778888888888888888888877665
No 146
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.48 E-value=30 Score=27.07 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
+-.|..++.++...+..|+.+...+..+-. ++..+...|+.+...|..+.....+++..++-+|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~----------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNN----------ELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444443333322 2334455555555566666666666666655443
No 147
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=77.64 E-value=20 Score=28.21 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCC---Chh--HHHHHHHHHHHHHHHHHHHH
Q 043456 41 KWRQLQFDVENYRK-ELNKINKQIAQLKLSGK---DFS--EMVTKTNEIKQQSADKEVEV 94 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~-~rN~isk~I~~~k~~~~---~~~--~l~~~~~~lk~~i~~le~~~ 94 (447)
-+..++.+++.|+. +|-+++++|+.+...|. +.+ ..+.+...+..+|..|+..+
T Consensus 10 g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l 69 (74)
T PF03449_consen 10 GYEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERL 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999987 88899999999877763 222 33444445555555555443
No 148
>PF14282 FlxA: FlxA-like protein
Probab=77.31 E-value=20 Score=30.15 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 48 DVENYRKELNKINKQIAQLKLSG-KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~~k~~~-~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
.+..|+..+..+.++|..+..+. .+.+....+...|..+|..|+.++..+..+......
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666665533 255566778888999999999999888887766653
No 149
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.86 E-value=26 Score=30.54 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG-KDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~-~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
+.+..|-.+-++...++.++.+|+.+.......+......= .....|..++..++..+.+|..+-.-|.++|.
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33566666666666666666667666666666555443321 12234566666666666666666666655554
No 150
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=76.44 E-value=14 Score=41.12 Aligned_cols=139 Identities=12% Similarity=-0.002 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCC
Q 043456 176 LNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 176 l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~ 253 (447)
-.+.+.+-+++.|...||+||.+-.|++.+.....+..... ...+.+. .+.-+|++|--..+...++.. ..+.
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~---~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N--~~r~ 426 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDE---ALELANPISEEYSVLRTSLLPGLLEALSYN--KNRK 426 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCc---ceEecCCcchhHHHHHHHHHHHHHHHHHHh--hccC
Confidence 34455666788889999999999999999998887744321 2233322 133477776655554444333 2467
Q ss_pred cC-eEeeccccccccCccC-CC-CCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q 043456 254 LP-IRYAGYSSCFRKEAGS-HG-RDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVA 327 (447)
Q Consensus 254 LP-lrl~~~s~~fR~E~~~-~G-~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~ 327 (447)
.| ++++++|.+|-..... .+ ....|+...... .+.+ ... ..--|..+....+.+++.||+.|....
T Consensus 427 ~~~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~--~~~w--~~~----~~v~f~d~Kg~ve~ll~~lg~~~~~~~ 495 (650)
T COG0072 427 NPDVRIFEIGDVFVKDEEAERETRHLAGLAAGLAG--EESW--QGK----RPVDFYDAKGDLEALLEALGVEYEFEP 495 (650)
T ss_pred CCCeeEEEeeeeEecCCcccchhHHHHHHhhcccc--cccc--ccC----CCcCHHHHHHHHHHHHHHhCCceEEEE
Confidence 89 9999999999875221 00 012233333222 1111 111 112377888899999999998776544
No 151
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=76.39 E-value=57 Score=35.36 Aligned_cols=68 Identities=7% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+.++..-+..+..++-+|+.+|.++..+|.+.... .+++++.+-+-+.++..|+-.+.+.+-++.++.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~k---iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTK---IEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333334444555556666666666655554221 234444444445555555555555555555544
No 152
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.14 E-value=32 Score=39.88 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS-----GKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~-----~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
-++..+..+.+..+..+++++.+.-.+-|+|+.+.+. +.+.++.-.+.+.|+.++..++.+...|.++++.....
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777777777777655442 12233344455555556555555555555555554443
Q ss_pred c
Q 043456 108 V 108 (447)
Q Consensus 108 l 108 (447)
+
T Consensus 431 ~ 431 (1074)
T KOG0250|consen 431 A 431 (1074)
T ss_pred H
Confidence 3
No 153
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=75.23 E-value=49 Score=27.83 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
+..+-.+-++...+..+...|...+++...-+..+..
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556666666666777777776666655554443
No 154
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=75.10 E-value=16 Score=29.12 Aligned_cols=59 Identities=12% Similarity=0.259 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 50 ENYRKELNKINKQIAQLKLSGKD----FSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 50 ~~Lr~~rN~isk~I~~~k~~~~~----~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
|.++++-..++++....+...++ +..-++++..+++.+-+||.....+.++..+.+.+|
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rL 69 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARL 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333222 234567888899999999999988888877776655
No 155
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=75.02 E-value=37 Score=31.31 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
..++.++.+.|..||..+..+++
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777776666543
No 156
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=74.89 E-value=21 Score=39.27 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHH-HHHhCCcCCCcCccEEEecC-C-CccccccCCChhHHHHhhccccCCCC
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEV-MAKCAQLAQFDEELYKVTGE-G-DDKYLIATAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~-~~~~G~~~~~~~~lf~i~~~-~-~~~~L~pTsE~~l~~l~~~~~~s~~~ 253 (447)
.+.+.+.+++.|...||+|+.+-.|++.+. +..-+. +.-+.....|.+. . +--+|++|-=+++....+.... +.
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~-~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~--~~ 475 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNR-EDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKD--AP 475 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcC-CccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhc--CC
Confidence 456667778889999999999999999865 554432 2111133445443 2 2336777655555444333322 34
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
+|++++++|.+|-.... .+ .| .++..+. ...+|... + -|..+....+.++..||++
T Consensus 476 ~p~klFEiG~V~~~~~~---~~-~~---~~e~~~l-a~~~~g~~---~--~f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 476 KPIKLFEVSDVVLLDES---KD-VG---ARNSRRL-AALYCGTT---S--GFEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred CCeeEEEeEeEEecCCc---cc-CC---cchhhEE-EEEEECCC---C--CHhhHHHHHHHHHHHcCCc
Confidence 59999999999954311 01 11 1222211 23344432 2 2788888999999999986
No 157
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=74.64 E-value=21 Score=32.30 Aligned_cols=77 Identities=8% Similarity=0.123 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVS 119 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g 119 (447)
+-+.+|+.+++.|+.+|-++.++|+.+...|+ ..+ -++-..-|++...++..+..|+..|... .+....++.|-+|
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GD-lsE-Naey~aak~~q~~~e~RI~~L~~~L~~A--~ii~~~~~~V~~G 86 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGD-HGD-QAEAIQRADELARLDDRINELDRRLRTG--PTPWSGSETLPGG 86 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC-cch-hhhHHHHHHHHHHHHHHHHHHHHHHHhC--EEecCCCCEEEcC
Confidence 34678889999999999999999988766552 111 1122233455555666666666555533 2223344556666
Q ss_pred C
Q 043456 120 N 120 (447)
Q Consensus 120 ~ 120 (447)
.
T Consensus 87 s 87 (158)
T PRK05892 87 T 87 (158)
T ss_pred c
Confidence 3
No 158
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.17 E-value=29 Score=32.16 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+..+..+-.+...++.+.++++.+-...++.-.... .++.....++++++|++|++.+.+...+.++...+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~--~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLL--KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333322221111 11223345566666666666666666666665543
No 159
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.04 E-value=38 Score=32.78 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 41 KWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
...+.+.+++++..++..+..+|..+.+
T Consensus 36 ~~~~sQ~~id~~~~e~~~L~~e~~~l~~ 63 (251)
T PF11932_consen 36 AAQQSQKRIDQWDDEKQELLAEYRQLER 63 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555443
No 160
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=73.94 E-value=15 Score=38.94 Aligned_cols=67 Identities=24% Similarity=0.411 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK----------DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~----------~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+.+++..+..++++++.+..++.+.+..+.+.+. ....+++....+++++++++.++..+++++...
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555555544443211 112344455556666666666666666655554
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.35 E-value=21 Score=39.74 Aligned_cols=76 Identities=12% Similarity=0.241 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD--------FSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~--------~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+..+++-++..+.+++..+.+.+..+...+..++..+.+.-.+ -..+.++-.+++.+++.++.+....++++
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666555555554433221100 12244445566677777777777777776
Q ss_pred HHHH
Q 043456 102 KAKL 105 (447)
Q Consensus 102 ~~~~ 105 (447)
..++
T Consensus 286 ~~l~ 289 (650)
T TIGR03185 286 RELA 289 (650)
T ss_pred HHHh
Confidence 6655
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.29 E-value=9.6 Score=34.64 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043456 44 QLQFDVENYRKELNKINKQIAQLKL-----------SGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVG 109 (447)
Q Consensus 44 ~l~~~~~~Lr~~rN~isk~I~~~k~-----------~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lP 109 (447)
.++..+++|-.+-.-+.|.+|+.+= +.++...+-.++.+|++++.+|+.+...++.++..+...++
T Consensus 34 ~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t 110 (169)
T PF07106_consen 34 AVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT 110 (169)
T ss_pred HHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555666666665555555554220 11223344555666666666666666666666665554443
No 163
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.06 E-value=44 Score=33.36 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG----KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~----~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
-..+..+-+.+..+..++..++++|..+.+++..+...- ....++.+++.++|++-.++...+..+-..+..+.
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777788888887777777665443210 11233444444444444444444444444444433
No 164
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.67 E-value=43 Score=33.36 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
.++.+-++..+...+...++.+..+|+.+.+++...
T Consensus 4 ~~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~ 39 (294)
T COG1340 4 MLDKLDELELKRKQLKEEIEELKEKRDELRKEASEL 39 (294)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667777777777777666543
No 165
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=72.63 E-value=44 Score=33.96 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
.++..++.+..+....+++++.+-.+..++.|..
T Consensus 10 ~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~ 43 (330)
T PF07851_consen 10 QKEFQELQETHRSYKQKLEELSKLQDKCSSSISH 43 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666544
No 166
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.62 E-value=36 Score=35.10 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 13 GIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQI 63 (447)
Q Consensus 13 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I 63 (447)
.+.....+.|.+|-...+ .++-.+-+++|+++.++.+.+.+.++.|..+
T Consensus 248 ~~i~~~lekI~sREk~iN--~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 248 QDISKTLEKIESREKYIN--NQLEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344445555555521111 2344444444444444444444444444333
No 167
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.41 E-value=34 Score=36.28 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFS-----EMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~-----~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
|-|..|-.+.|++..+++.|.++-+.+.++...+++...+++ .+-.+-.++.++..+|+.+..++...+.++..+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999998888888888876544443 233455678889999999999999999999888
Q ss_pred cCCCcC
Q 043456 108 VGNLVH 113 (447)
Q Consensus 108 lPN~~h 113 (447)
|-+...
T Consensus 139 l~~~~~ 144 (472)
T TIGR03752 139 LAGVLT 144 (472)
T ss_pred Hhhccc
Confidence 876543
No 168
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=70.93 E-value=60 Score=26.97 Aligned_cols=77 Identities=13% Similarity=0.193 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------Ch----hHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK---------------DF----SEMVTKTNEIKQQSADKEV 92 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~---------------~~----~~l~~~~~~lk~~i~~le~ 92 (447)
+..+..+-++...+..+...+...+++....+..+..-.+ +. ..|..+...+..+++.+++
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666554444333332110 11 2244455556666666666
Q ss_pred HHHHHHHHHHHHHHhc
Q 043456 93 EVREAWAAVKAKLEVV 108 (447)
Q Consensus 93 ~~~~~~~~l~~~~~~l 108 (447)
++..+++++..+-..|
T Consensus 85 ~~~~l~~~~~elk~~l 100 (105)
T cd00632 85 QEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666655554433
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.72 E-value=42 Score=29.01 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 043456 89 DKEVEVREA 97 (447)
Q Consensus 89 ~le~~~~~~ 97 (447)
.|+.++..+
T Consensus 72 ~L~~el~~l 80 (120)
T PF12325_consen 72 ELEQELEEL 80 (120)
T ss_pred HHHHHHHHH
Confidence 333333333
No 170
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=70.34 E-value=38 Score=31.60 Aligned_cols=25 Identities=4% Similarity=0.218 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
|.++.+++.++.+.|..++..+.++
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 171
>PHA03386 P10 fibrous body protein; Provisional
Probab=70.24 E-value=26 Score=28.72 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
.+.|.++|.+.-++|.+++.++..-+. | -.+-.++.++..++..+.+-|.- --||++
T Consensus 11 r~dIkavd~KVdaLQ~qV~dv~~n~~~-----------------L----Da~~~qL~~l~tkV~~Iq~iLn~--d~iPd~ 67 (94)
T PHA03386 11 LDAVQEVDTKVDALQTQLNGLEEDSQP-----------------L----DGLPAQLTELDTKVSDIQSILTG--DEVPDP 67 (94)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcchh-----------------h----hhHHHHHHHHHHHHHHHHHhcCc--ccCCCC
Confidence 466777777777777777777654111 1 11223344444444444443332 238888
Q ss_pred cCCCCCCCC
Q 043456 112 VHDSVPVSN 120 (447)
Q Consensus 112 ~h~~vP~g~ 120 (447)
|.|.+|-.+
T Consensus 68 P~p~~p~~~ 76 (94)
T PHA03386 68 PDPPLPLLP 76 (94)
T ss_pred CCCCCCCCc
Confidence 888888765
No 172
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.14 E-value=34 Score=36.89 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
+++.+|.++.++++.++..++.+++.+..+++-
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 103 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKF 103 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888877777776653
No 173
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=68.96 E-value=34 Score=31.24 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 41 KWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+..++..+++.|+.+...++++|...++.. +..+...++-+|.++..+-...+-+|+..+
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k~~-----~n~~i~slk~EL~d~iKe~e~~emeLyyec 165 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKKKD-----LNEEIESLKSELNDLIKEREIREMELYYEC 165 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788889999999998886644432 233455566666666666666666655443
No 174
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.95 E-value=43 Score=33.86 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
|.+....+..-+..++++.+.+.+++..++.
T Consensus 168 L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 168 LDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555666666555443
No 175
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=68.19 E-value=48 Score=26.22 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=15.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+.+++-.++-.+-..+..++.++..+.+-|
T Consensus 36 ~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 36 DVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555554433
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.39 E-value=46 Score=36.32 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 36 ISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 36 ~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
-+|..+..+++.+++.|+++...+.+++........+...+-.++..|+.+|.+-+....+|+.+|..+.
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443322222223334455666677777777777777777766553
No 177
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.31 E-value=72 Score=29.99 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
+..+-+.+..-+..++.+...+.+++..
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 178
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.28 E-value=42 Score=30.70 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVE 93 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~ 93 (447)
++-.||.+--.++.++..|+..-.-+-.+|..+... -..+++..++..|+++.+...+.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~-Lt~eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA-LTTEEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443221 12233333444444444444333
No 179
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.94 E-value=61 Score=32.96 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 36 ISLDKKWRQLQFDVENYRKELNK 58 (447)
Q Consensus 36 ~~ld~~~r~l~~~~~~Lr~~rN~ 58 (447)
.++.++.++++..-.....+.++
T Consensus 7 ~eL~~efq~Lqethr~Y~qKlee 29 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEE 29 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 180
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.75 E-value=71 Score=27.85 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 73 FSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 73 ~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
..++...+.+++.+++.+...+..|+.++..
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666544
No 181
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.75 E-value=40 Score=36.40 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELN 57 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN 57 (447)
+.+-.+.++...++.+++.+...+.
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.04 E-value=59 Score=30.80 Aligned_cols=50 Identities=6% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 51 NYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 51 ~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+++.+.+...++|.+++.+ .++|.++...+++++..++.+...++++...
T Consensus 122 ~l~~~~~~~~~~~~~L~~~---n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEE---NQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445444443 2456777777888888887777777766543
No 183
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=64.64 E-value=27 Score=31.53 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCCCCC
Q 043456 41 KWRQLQFDVENYR-KELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVG-NLVHDSVPV 118 (447)
Q Consensus 41 ~~r~l~~~~~~Lr-~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lP-N~~h~~vP~ 118 (447)
=+.+++.+++.|+ .+|-+++++|+.+...|. ..+ -++-..-|++...++..+..|++.|...-.-=| +.+++.|.+
T Consensus 9 G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GD-lsE-NaeY~aak~~~~~le~rI~~L~~~L~~A~iid~~~~~~~~V~~ 86 (156)
T TIGR01461 9 GYEKLKQELNYLWREERPEVTQKVTWAASLGD-RSE-NADYQYGKKRLREIDRRVRFLTKRLENLKVVDYSPQQEGKVFF 86 (156)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHcCC-cch-hhhhHHHHHHHHHHHHHHHHHHHHHhcCEEeCCCCCCCCEEec
Confidence 3567888999997 589999999988876663 111 112233456666667777777666655433212 334455566
Q ss_pred CC
Q 043456 119 SN 120 (447)
Q Consensus 119 g~ 120 (447)
|.
T Consensus 87 Gs 88 (156)
T TIGR01461 87 GA 88 (156)
T ss_pred Ce
Confidence 63
No 184
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=64.50 E-value=55 Score=26.18 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 43 RQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 43 r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
+++-+.+..||++.......|..+-.-....++-.+++++|++++.....-+..+.+.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666667776666666665554444455667777888888877777766666554
No 185
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=64.11 E-value=76 Score=28.92 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD---------FSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~---------~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
.++....+...++..++..++.+++.+.+.+..+...+.. ....++.+..+++.+..++..+..++..+
T Consensus 98 ~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 98 QELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666666666666666777777766666554422 22344555666666666666666665543
No 186
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=64.04 E-value=9.4 Score=34.63 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 37 SLDKKWRQLQFDVENYRKELNKINKQ--IAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 37 ~ld~~~r~l~~~~~~Lr~~rN~isk~--I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
....+.++++.++.++++|.|.+|-+ .++- ..+..+...+.+++++++++...-...++..+
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkw-------aKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~ 100 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKW-------AKLNRKLDKLEEELEKLNKSLSSEKSSFDKSL 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778888888887777642 2211 12444555566666666555555544444444
No 187
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.84 E-value=32 Score=35.42 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS----------GKDFSEMVTKTNEIKQQSADKEVEVRE 96 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~----------~~~~~~l~~~~~~lk~~i~~le~~~~~ 96 (447)
-+++.+.-+++++....+.++..+.|.|+.++.+.|.. +.....+++.+..||++|.+++-++.-
T Consensus 279 ~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 279 QDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 35566666666777777777777777777766554431 111223455556666666666544433
No 188
>PHA00727 hypothetical protein
Probab=63.83 E-value=21 Score=33.30 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS--------GKDFSEMVTKTNEIKQQSADKE 91 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~--------~~~~~~l~~~~~~lk~~i~~le 91 (447)
+++.+++--..-+.+++|+...++++++|+.-|.- +.+.+-.+++-.+||.++..-+
T Consensus 6 lvs~~eeelrkaqsleelkqkyee~qkqi~dgk~lkrlykvyekrefelk~~qf~qlkael~kkk 70 (278)
T PHA00727 6 LVSAWEEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKK 70 (278)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444456888999999999998753321 1222333445555555544443
No 189
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.79 E-value=29 Score=33.42 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
..+.++++++..+|..||..+...+.+.....-.+
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888888888887776665554
No 190
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.53 E-value=83 Score=27.92 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
.+|.+|..+...+..+++.+......+.......-+...+.+.|-.++..|-+++...+..+....+.+
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777776666666555544332222223344444444444444444444444443
No 191
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.42 E-value=67 Score=28.05 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
..+...+.+.++.++..+..+.+++...
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554443
No 192
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.35 E-value=57 Score=32.92 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
+-+++..+.++-+.+..++++|..++..+.+++..+...
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777888888888888888888887765543
No 193
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=62.20 E-value=93 Score=28.51 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
.++.+..++...+..++++++...+....++...+.
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888888888888887777777765544
No 194
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.65 E-value=88 Score=28.41 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
++.++..=+.+++.......++.+...+..++.+ |.++.+.|.+++..|+++...++++
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~----------l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNES----------LQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556555555555444444444444444444333 3333444444444444444444444
No 195
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.49 E-value=1.7e+02 Score=31.96 Aligned_cols=23 Identities=4% Similarity=-0.153 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 043456 85 QQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 85 ~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
+..++++..+..+...++.+.+.
T Consensus 371 ~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 371 DFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666656555555
No 196
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.49 E-value=1e+02 Score=31.05 Aligned_cols=69 Identities=14% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+.++.++.++..++..++.+++.+...+.++..+.-+ +...+.-+..++.++...++.++....+++..
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~---~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWR---EYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433322221 11223333444444455555544444444443
No 197
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.34 E-value=32 Score=31.83 Aligned_cols=30 Identities=7% Similarity=0.112 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
.++.+..+++++++++++.+.+.++..+--
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666554433
No 198
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.21 E-value=93 Score=29.81 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHHH
Q 043456 14 IPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD-FSEMVTKTNEIKQQSADKEV 92 (447)
Q Consensus 14 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~-~~~l~~~~~~lk~~i~~le~ 92 (447)
-.|.+.+...+|-.+ +.+..+-.+-+...+...-...++...|++++.-. ++..+++ ..-+.++++..+.++..+..
T Consensus 30 ~~D~f~q~~r~~~~n-S~~efar~lS~~~~e~e~l~~~l~etene~~~~ne-L~~ek~~~q~~ieqeik~~q~elEvl~~ 107 (246)
T KOG4657|consen 30 KIDSFIQSPRRRSMN-SLVEFARALSQSQVELENLKADLRETENELVKVNE-LKTEKEARQMGIEQEIKATQSELEVLRR 107 (246)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555333222 23444445555555555666666777777776544 3333222 22355666666666666665
Q ss_pred HHHHHHHHHH
Q 043456 93 EVREAWAAVK 102 (447)
Q Consensus 93 ~~~~~~~~l~ 102 (447)
....++++..
T Consensus 108 n~Q~lkeE~d 117 (246)
T KOG4657|consen 108 NLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHhh
Confidence 5555555544
No 199
>PHA02562 46 endonuclease subunit; Provisional
Probab=60.93 E-value=48 Score=35.76 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
++++.+...++.++..|+.....+++++..+.
T Consensus 354 ~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~ 385 (562)
T PHA02562 354 ITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence 33444455555555555555444444444433
No 200
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=60.82 E-value=44 Score=26.52 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 71 KDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 71 ~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
++.+.+.+-+..++++|..||.++..||.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777888889999999999998875
No 201
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.75 E-value=48 Score=35.74 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFS----EMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~----~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
.++..|++|..+.+++.+.+...++++..+.+....++.++.+.+ .|++++++.|-.-+.|-.+..+++++=..+-
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 457889999999999999999999999999998888887775443 3666666666666666666777777655555
Q ss_pred HhcCCCcCCCC
Q 043456 106 EVVGNLVHDSV 116 (447)
Q Consensus 106 ~~lPN~~h~~v 116 (447)
-.+-|+-...|
T Consensus 184 KqVs~LR~sQV 194 (772)
T KOG0999|consen 184 KQVSNLRQSQV 194 (772)
T ss_pred HHHHHHhhhhh
Confidence 55566655555
No 202
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=60.04 E-value=1.3e+02 Score=30.66 Aligned_cols=76 Identities=26% Similarity=0.301 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK---LSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k---~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
.+++.++..++.+++.-++..+.- .+..+++..++ .+..|. ++++ -.+++|.+++.++..++++|..+| |
T Consensus 32 ~~~~~~lske~a~l~~iv~~~~~~-~~~~~~l~~a~~~l~~~~D~-em~e---ma~~Ei~~~~~~~~~le~~L~~lL--l 104 (363)
T COG0216 32 PDEYRKLSKEYAELEPIVEKYREY-KKAQEDLEDAKEMLAEEKDP-EMRE---MAEEEIKELEAKIEELEEELKILL--L 104 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCH-HHHH---HHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 466666666665555444433332 22233333221 111121 1211 246678888888888888877665 4
Q ss_pred CCCcCC
Q 043456 109 GNLVHD 114 (447)
Q Consensus 109 PN~~h~ 114 (447)
|-.|++
T Consensus 105 PkDpnd 110 (363)
T COG0216 105 PKDPND 110 (363)
T ss_pred CCCCCC
Confidence 655543
No 203
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=59.79 E-value=62 Score=30.09 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS----GKDFSEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~----~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
+++-.++.+.......+..|++++..+..+|..+... ....+.+..+...|.-+...+++++..++++
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666666655555543321 0112334445555555555555555555544
No 204
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=59.65 E-value=75 Score=24.10 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 39 DKKWRQLQFDVENYRKELNKINKQI 63 (447)
Q Consensus 39 d~~~r~l~~~~~~Lr~~rN~isk~I 63 (447)
+.+...++.+++.++.+...+++.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555544
No 205
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=59.40 E-value=46 Score=30.05 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCCCCC
Q 043456 41 KWRQLQFDVENYRK-ELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV-VGNLVHDSVPV 118 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~-~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~-lPN~~h~~vP~ 118 (447)
=+.+++.+++.|+. +|-+++++|+.+...|. ..+ -++-..-|++...++..+..|+..|...-.- -+.+.++.|-+
T Consensus 11 g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GD-l~E-NaeY~aAk~~~~~~e~rI~~L~~~L~~A~iid~~~~~~~~V~~ 88 (157)
T PRK01885 11 GYARLKQELDYLWREERPEVTQKVSWAASLGD-RSE-NADYIYGKKRLREIDRRVRFLTKRLENLKVVDYSPQQEGKVFF 88 (157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCC-cch-hhcHHHHHHHHHHHHHHHHHHHHHHccCEEECCCCCCCCEEEe
Confidence 45678899999976 79999999998876652 111 0112233555555666666666555432211 12233445555
Q ss_pred C
Q 043456 119 S 119 (447)
Q Consensus 119 g 119 (447)
|
T Consensus 89 G 89 (157)
T PRK01885 89 G 89 (157)
T ss_pred C
Confidence 5
No 206
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.39 E-value=44 Score=36.16 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.++.++..++.+++.++++++.+..++.+.|.+. ..+..+||.+|.+.+.+++++.++=+-.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~----------q~eL~~Lk~~ieqaq~~~~El~~~n~pk 154 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQK----------QLELSALKGEIEQAQRQLEELRETNNPK 154 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----------HHHHHHHHhHHHHHHHHHHHHHhhcCCc
Confidence 5677778888888888888877777777766543 2356677888887777777777664433
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.38 E-value=92 Score=31.53 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------C-------CChhHHHHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS---------G-------KDFSEMVTKTNEIKQQSADKEVEV 94 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~---------~-------~~~~~l~~~~~~lk~~i~~le~~~ 94 (447)
+..-+...-++-+.++.+++.|+.+.+++...|.-+... + .+.+.++.+...++.++..|+..+
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~ 149 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777788888888877777766533321 1 234567777777777777777776
Q ss_pred HHHHHHHHH
Q 043456 95 REAWAAVKA 103 (447)
Q Consensus 95 ~~~~~~l~~ 103 (447)
..+-++..+
T Consensus 150 qs~lDEkeE 158 (319)
T PF09789_consen 150 QSLLDEKEE 158 (319)
T ss_pred HHHHHHHHH
Confidence 666555443
No 208
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=59.16 E-value=48 Score=32.96 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhh----------cCCChhHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNK--------------INKQIAQLKL----------SGKDFSEMVTKTNEIKQQSA 88 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~--------------isk~I~~~k~----------~~~~~~~l~~~~~~lk~~i~ 88 (447)
.++..|-+++|.++.++..++.+.|+ +..+|.++|. +|.....+++.+..||++..
T Consensus 273 nqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~ 352 (384)
T KOG0972|consen 273 NQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQ 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHH
Confidence 56777777777777777777766554 3344443332 23334456666667777777
Q ss_pred HHHHHHHHHHHHHHH
Q 043456 89 DKEVEVREAWAAVKA 103 (447)
Q Consensus 89 ~le~~~~~~~~~l~~ 103 (447)
++.-++.-++..+.+
T Consensus 353 ~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 353 TMNVQIGVFEHSILQ 367 (384)
T ss_pred hhhhheehhhHHHHH
Confidence 777666666655444
No 209
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=59.10 E-value=1.6e+02 Score=27.71 Aligned_cols=50 Identities=30% Similarity=0.478 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 043456 13 GIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQF--DVENYRKELNKINKQIAQ 65 (447)
Q Consensus 13 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~--~~~~Lr~~rN~isk~I~~ 65 (447)
+||+..-+.|..|. ..+-+.+.--..|.++.. .++.++.+..+++|+++.
T Consensus 13 enpeilvdvL~~Rp---eilye~l~kL~pwq~latk~dve~l~~e~E~~~k~l~d 64 (231)
T COG5493 13 ENPEILVDVLTQRP---EILYEVLAKLTPWQQLATKQDVEELRKETEQRQKELAD 64 (231)
T ss_pred hCcHHHHHHHHhCh---HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999885 234555554455555544 788888888888888874
No 210
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=58.75 E-value=35 Score=33.22 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 39 DKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 39 d~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
-+++.++..++..++.++..+.+-+.+.+ +-+|.-++..++.++..+|..++.+++.++++.
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666666665443222 112333455566666666666666666665543
No 211
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=58.67 E-value=61 Score=35.43 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVH 113 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h 113 (447)
+.+.|++++++.++.++.+..++....+++...+..|-+.|-
T Consensus 220 e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 220 EFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQ 261 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccH
Confidence 445566777777777777777777777777777776655543
No 212
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=58.26 E-value=90 Score=32.76 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQSADKEVEV 94 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~ 94 (447)
++.+.+..+...++.|+.+.
T Consensus 91 ~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 91 KLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 213
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.02 E-value=84 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043456 47 FDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~ 65 (447)
.....|+.+|+....+++.
T Consensus 26 ~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544
No 214
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.99 E-value=57 Score=34.75 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 46 QFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 46 ~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+.++.+-+.+.+++.|++..++.+ .+.+.++...+..+|++++.+...|++++..
T Consensus 68 qSALteqQ~kasELEKqLaaLrqE---lq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRE---LDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666666666665432 2333445556667777777777777777643
No 215
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.25 E-value=78 Score=23.56 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
++..++.++...+.+.....++|+..+
T Consensus 25 dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 25 DVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444455555555555555555544
No 216
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=57.01 E-value=70 Score=37.35 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=55.5
Q ss_pred hhhhhcccCCCHHHHHHHHHhhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 043456 4 INLFREEKGGIPEKIRESQRRRF-ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNE 82 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~ 82 (447)
|+.||.+ ++.+..++.|..|+ ++..-.+.|+++-- +|=...+.+.|++|..++.++|+.+..-=.+.+. ..+-
T Consensus 405 i~~ir~s--~~~~~a~~~l~~~f~~s~~qa~aIl~mrL-~~Lt~le~~kl~~E~~eL~~~I~~l~~iL~~~~~---l~~v 478 (957)
T PRK13979 405 IKTIRSS--KSKKDASENLIEKFGFTDEQAEAILELML-YRLTGLEIVAFEKEYKELEKLIKKLTKILSSEKE---LLKV 478 (957)
T ss_pred HHHHHcC--CCHHHHHHHHHHHhCCCHHHHHHHHhCcH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHH
Confidence 4568865 46778888888875 55555677777753 3455678888999999999988876553222222 2334
Q ss_pred HHHHHHHHHHHHH
Q 043456 83 IKQQSADKEVEVR 95 (447)
Q Consensus 83 lk~~i~~le~~~~ 95 (447)
+++++.++.++..
T Consensus 479 i~~EL~eik~kyg 491 (957)
T PRK13979 479 IKKELKEVKEKYG 491 (957)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555555444
No 217
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.27 E-value=93 Score=32.68 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l 101 (447)
..+.++++|..++..+..++.+-
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455666666666666665543
No 218
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.08 E-value=1.9e+02 Score=27.71 Aligned_cols=72 Identities=14% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFS----EMVTKTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~----~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
+-++.++.-++..+.+.|+++.|+++..++.+...+...+ .+..+...|++...+|+..+.-.+..+...+.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~ 219 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLV 219 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 3444455556666777777777777777766554332111 12335556666666666665555554444433
No 219
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.01 E-value=52 Score=34.83 Aligned_cols=84 Identities=23% Similarity=0.310 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINK----------QIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk----------~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
++..++..|.++.++++.+++.++.....+.+ ......+-......+.++.+++++++++|++++...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~-- 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS-- 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 33445555555555555555555555444433 111111111233456666677777777666666555
Q ss_pred HHHHHHHhcCCCcCCCC
Q 043456 100 AVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 100 ~l~~~~~~lPN~~h~~v 116 (447)
.......+..-.+|.|
T Consensus 409 -~~~~~I~v~~~vypgv 424 (451)
T PF03961_consen 409 -YKEARIKVRKRVYPGV 424 (451)
T ss_pred -ccceEEEECCEEECCE
Confidence 1222344455555554
No 220
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=55.69 E-value=65 Score=35.82 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 42 WRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 42 ~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
..++..++..+..+...+.++|.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555443
No 221
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.65 E-value=74 Score=32.56 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh-HHH----HHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFS-EMV----TKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~-~l~----~~~~~lk~~i~~le~~~~~~~~ 99 (447)
++.+..+..+-..++.+.+.|+.+.|.+.+++.+....+++.+ .|. .-+.+=|.+|.+|...+..++.
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 5667777777778888999999999999999988777665443 121 2233334555555555544444
No 222
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.48 E-value=93 Score=23.89 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLV 112 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~ 112 (447)
++...+..+-..|.++......++...+.+||++-
T Consensus 28 ~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 28 AQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33344444444455555555556666666666653
No 223
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.23 E-value=87 Score=30.55 Aligned_cols=29 Identities=7% Similarity=0.271 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
++.++..+++++....+.+.++.+.+...
T Consensus 75 l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 224
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.82 E-value=88 Score=29.13 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 44 QLQFDVENYRKELNKINKQIAQLKLSGKD-----FSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 44 ~l~~~~~~Lr~~rN~isk~I~~~k~~~~~-----~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
.+..++..|..+.+.+.+++..++..-+. .+....+.+..++++..|+..-..+.+++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443322110 01122233445555555555555555544
No 225
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=54.33 E-value=1.4e+02 Score=27.67 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
++..|+..|.+..+....+..-+.. .++|.. |.+++..+..+++.+-..+...+..|...+
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~hq~~----~~~I~~----------L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEHQEN----QARIQQ----------LRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777776655544444322222 222322 444555556666666666666666655554
No 226
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=54.25 E-value=12 Score=38.80 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.1
Q ss_pred chhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 396 ATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 396 ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
-+.|++.++|++-..++-..||.||+|+. +.++|..
T Consensus 248 ~~~r~~~~~L~~a~~e~~~~LPpwLAP~q--V~IIpl~ 283 (387)
T PRK14938 248 DVGLLVYYFLLESIRKQPPTLPDWLNPIQ--VRILPVK 283 (387)
T ss_pred EecHHHHHHHHHhhhHHhCcCCCccCcce--EEEEEeC
Confidence 47899999999987777679999999998 7788875
No 227
>PRK09039 hypothetical protein; Validated
Probab=54.02 E-value=83 Score=32.18 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=16.6
Q ss_pred ccceeeccHHHHHHHHHHHHHHHH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDF 187 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~ 187 (447)
+|..-+.|.|......+..++.+.
T Consensus 230 ~gsa~L~~~~~~~L~~ia~~l~~~ 253 (343)
T PRK09039 230 TGSAELNPEGQAEIAKLAAALIEL 253 (343)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHh
Confidence 345678888887777777766653
No 228
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=53.90 E-value=1.1e+02 Score=34.59 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=37.0
Q ss_pred hhhhhcccCCCHHHHHHHHHhh-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 4 INLFREEKGGIPEKIRESQRRR-FASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R-~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
|+.||.+ .+.+.+++.|..+ +++..-.+.|+++- .++-...+.+.|+.+.+++.++|..+..
T Consensus 386 i~iir~~--~~~~~~~~~l~~~f~~~~~q~~~il~m~-l~~lt~~e~~kl~~e~~~l~~~i~~l~~ 448 (738)
T TIGR01061 386 IKLIRSS--EDKSDAKENLIDNFKFTENQAEAIVSLR-LYRLTNTDIFELKEEQNELEKKIISLEQ 448 (738)
T ss_pred hHHHHcC--CCHHHHHHHHHHhcCCCHHHHHHHHhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456633 4666777777777 45444456666654 3334455666777777777777666544
No 229
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.58 E-value=1.8e+02 Score=28.91 Aligned_cols=83 Identities=11% Similarity=0.186 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS-GKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~-~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
+....||++..++.+.+++|..+.-++++++..-.++ -.+..++++....+...+..++.+...+. .+++.--|+
T Consensus 122 ~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik----~lvln~~~f 197 (300)
T KOG2629|consen 122 ADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIK----QLVLNMSNF 197 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHhccccc
Confidence 5567788888888888888888888888766443221 01122334444445555666666655555 456667788
Q ss_pred cCCCCCCC
Q 043456 112 VHDSVPVS 119 (447)
Q Consensus 112 ~h~~vP~g 119 (447)
+.|.+|..
T Consensus 198 ~~p~~p~~ 205 (300)
T KOG2629|consen 198 APPVAPSS 205 (300)
T ss_pred CCCCCccc
Confidence 88888753
No 230
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=53.22 E-value=1.1e+02 Score=23.98 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+....++-..++.+|..+--.+|+..-+... .+-.|+++.+++-+++..+...+..++.++..
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~---~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNN---TIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777777765422211 12234444444445555555444444444443
No 231
>PRK12704 phosphodiesterase; Provisional
Probab=53.10 E-value=67 Score=34.84 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
.+++...++++..+++++..+.++....|..+-+++.+..
T Consensus 116 e~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea 155 (520)
T PRK12704 116 EKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3445556667777777777788888888899999888665
No 232
>PRK01156 chromosome segregation protein; Provisional
Probab=53.01 E-value=85 Score=36.20 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+.....+|.+++..|+.+...++..+.++-
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666665555433
No 233
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.52 E-value=70 Score=32.35 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 82 EIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+++.++..++.++..+.++...
T Consensus 234 el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 234
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.39 E-value=1.1e+02 Score=25.57 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 71 KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 71 ~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
++...|.-++.+++-+++.++.++..+......++
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888888888888888866655443
No 235
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.37 E-value=1.2e+02 Score=35.71 Aligned_cols=94 Identities=10% Similarity=0.176 Sum_probs=53.4
Q ss_pred HHHHHHHHhhCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh----hHHHHHHHHHHHH
Q 043456 16 EKIRESQRRRFAS-----VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDF----SEMVTKTNEIKQQ 86 (447)
Q Consensus 16 e~v~~~l~~R~~~-----~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~----~~l~~~~~~lk~~ 86 (447)
+.+++.++.|... .+...+...+..+..+.+.++..+.+.+.++.|+|.+..+...+. +....++.++..+
T Consensus 369 e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~e 448 (1293)
T KOG0996|consen 369 EAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTE 448 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHH
Confidence 4555555555211 122344555555566666666666666666666666555443222 2233455566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 043456 87 SADKEVEVREAWAAVKAKLEVVG 109 (447)
Q Consensus 87 i~~le~~~~~~~~~l~~~~~~lP 109 (447)
+..|+..+...+.++.+.+..+-
T Consensus 449 i~~L~~~~~~~~~~l~e~~~~l~ 471 (1293)
T KOG0996|consen 449 IEQLEELLEKEERELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777766553
No 236
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=52.30 E-value=1.3e+02 Score=24.74 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+.-|.+--+....+...+...-+.+++.+..+....+......+++.++-+++..||.....|.+-.
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ys 89 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYS 89 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555555555555555555544333344455556666666666666666555443
No 237
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=52.13 E-value=79 Score=35.56 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 28 SVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG----KDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 28 ~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~----~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
+.++=..|-.+.+--+.++.++.++|.+...++.++..+.+.. .....|-.+.++.+..-..+|+++.+......
T Consensus 441 E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 441 EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3343345555555556777777778877777777776665532 22344555556666666666666666554433
No 238
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=51.68 E-value=1.2e+02 Score=32.90 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
++.....|.++..+++.+++.|+++.+...++...+
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666655555555544433
No 239
>PRK03918 chromosome segregation protein; Provisional
Probab=51.63 E-value=76 Score=36.36 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHc-CCcEEEEEec
Q 043456 307 EMIKNSEEFYQML-KIPYQVVAIV 329 (447)
Q Consensus 307 ~~~~~~~~i~~~L-gl~yr~v~~~ 329 (447)
.+-..+..+|..| +-.|..+.+.
T Consensus 744 ~l~~~~~~if~~l~~~~~~~~~l~ 767 (880)
T PRK03918 744 KVGEIASEIFEELTEGKYSGVRVK 767 (880)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe
Confidence 3334445666666 4456655543
No 240
>PRK02224 chromosome segregation protein; Provisional
Probab=51.62 E-value=77 Score=36.44 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=5.3
Q ss_pred HHHHHHHHHHc
Q 043456 309 IKNSEEFYQML 319 (447)
Q Consensus 309 ~~~~~~i~~~L 319 (447)
-..+.++|+.+
T Consensus 740 ~~~~~~~~~~~ 750 (880)
T PRK02224 740 ERMLNETFDLV 750 (880)
T ss_pred HHHHHHHHHHH
Confidence 33444555554
No 241
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.55 E-value=1.5e+02 Score=32.83 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
+++|..+.++.+++..++..-....+++.+++..+
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555555555555555555555555555554443
No 242
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=51.30 E-value=57 Score=29.08 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcCCCCCC
Q 043456 41 KWRQLQFDVENYRK-ELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLE-VVGNLVHDSVPV 118 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~-~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~-~lPN~~h~~vP~ 118 (447)
=++.++.+++.|++ +|-+++++++.+...+.-.+ -++-..-|++...++..+..+++.|...-. ..++.+.+.|-+
T Consensus 6 g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~E--na~y~aak~~~~~~e~ri~~L~~~L~~a~iv~~~~~~~~~V~~ 83 (151)
T TIGR01462 6 GYEKLKEELEYLKTVKRPEISEEIAEAREHGDLSE--NAEYHAAKEEQGFNEGRIAELEDLLANAQVIDDSKLSTDVVGF 83 (151)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhh--ccchHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCEEee
Confidence 35678899999985 79999999988876552111 011223355555566666666666655433 223444445555
Q ss_pred CC
Q 043456 119 SN 120 (447)
Q Consensus 119 g~ 120 (447)
|.
T Consensus 84 Gs 85 (151)
T TIGR01462 84 GS 85 (151)
T ss_pred CC
Confidence 53
No 243
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=50.63 E-value=1e+02 Score=24.96 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG-KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~-~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
-.+|.++...++.++++=+.-|..+.+.++.....- .....+-..++++=.+|+.+|.++..+|..+..+-.
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566655543321111 111234455666666666677776666666665543
No 244
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=50.53 E-value=97 Score=34.91 Aligned_cols=128 Identities=14% Similarity=0.038 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCCc
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
.+.+.+-+++.|...||+|+.+-.|++.+.+ + .+...+.+. .+.-+|++|-=+++....+.. .+....
T Consensus 400 ~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~--------~-~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N-~~r~~~ 469 (704)
T CHL00192 400 DYNTRDKIRSYLRNLGLTELIHYSLVKQESF--------S-KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQEN-LKQGNS 469 (704)
T ss_pred HHHHHHHHHHHHHhCCCceEecccccChhhc--------C-CCcEEEeCCCchHHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 3455666788899999999999999988642 1 134556543 233477777555554433322 234567
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCC-cchH------HHHHHHHHHHHHHHHHHcCCcEEE
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN-GNDS------WDMHEEMIKNSEEFYQMLKIPYQV 325 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e-~~~s------~~~~~~~~~~~~~i~~~Lgl~yr~ 325 (447)
|++++++|.+|-... . ++ +|-.+.= ..++... ...+ .--|..+....+.++..||+++..
T Consensus 470 ~~rlFEiG~Vf~~~~-----~--~~---~e~~~la-~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i~~~~ 536 (704)
T CHL00192 470 TLEGFEIGHVFNLDS-----S--SI---IEETELA-GGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNLPIYW 536 (704)
T ss_pred CEeEEEeeeeEcCCC-----c--cc---cccceEE-EEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCCcEEE
Confidence 999999999994321 0 11 1111111 1122210 0001 113888899999999999997543
No 245
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=50.39 E-value=28 Score=38.01 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
+|.|+.|..+...++.+.++|..+|+++-+.++..
T Consensus 510 Ld~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~ 544 (604)
T KOG3863|consen 510 LDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVM 544 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888888777665554
No 246
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.22 E-value=85 Score=37.00 Aligned_cols=41 Identities=7% Similarity=0.132 Sum_probs=29.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 71 KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 71 ~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
++++.|-.....|+++|+++.+.+.++|+.|.+.-.++|+-
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a 1265 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLA 1265 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchh
Confidence 45556666677788888888888888888777766666554
No 247
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=50.11 E-value=1.4e+02 Score=34.14 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=52.9
Q ss_pred hhhhhcccCCCHHHHHHHHHhh-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 043456 4 INLFREEKGGIPEKIRESQRRR-FASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNE 82 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R-~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~ 82 (447)
|+.||.+ .+.+.+++.|..+ +++..-.+.|+.+- -++-.+.+.+.|+.+..++.++|..+..-=.+. ....+-
T Consensus 386 i~~ir~~--~~~~~~~~~L~~~~~~~~~qa~~il~m~-L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~---~~l~~v 459 (800)
T TIGR01063 386 IALIRAS--QNTEEAKTRLVERFSLSEIQAQAILDMR-LQRLTGLEREKLQEEYKELLELIADLEDILASE---ERVLEI 459 (800)
T ss_pred HHHHHhC--CCHHHHHHHHHHhcCCCHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCH---HHHHHH
Confidence 4556644 4667788888877 45554466777754 444556678888888888888887765432222 223344
Q ss_pred HHHHHHHHHHHHH
Q 043456 83 IKQQSADKEVEVR 95 (447)
Q Consensus 83 lk~~i~~le~~~~ 95 (447)
++++++++.++..
T Consensus 460 i~~EL~eikkkfg 472 (800)
T TIGR01063 460 IREELEEIKEQFG 472 (800)
T ss_pred HHHHHHHHHHHhC
Confidence 5566666555443
No 248
>PRK05560 DNA gyrase subunit A; Validated
Probab=49.95 E-value=1.4e+02 Score=34.25 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=51.5
Q ss_pred hhhhhcccCCCHHHHHHHHHhhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 043456 4 INLFREEKGGIPEKIRESQRRRF-ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNE 82 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~ 82 (447)
|+.||.+ ++.+.+++.|..++ ++..-.+.|+.+- -++=.+.+.+.|+.+.+++.++|+.++.-=.+... ..+-
T Consensus 389 I~iir~s--~~~~~~~~~L~~~f~~~~~qa~~IL~m~-L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~---l~~~ 462 (805)
T PRK05560 389 IALIRAS--PTPAEAKEGLMERFGLSEIQAQAILDMR-LQRLTGLERDKIEDEYKELLALIADLKDILASPER---LLEI 462 (805)
T ss_pred HHHHHcC--CCHHHHHHHHHHhcCCCHHHHHHHHHhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHH
Confidence 4566744 46677888887774 4444466777754 34455567888888888888888776553222221 2334
Q ss_pred HHHHHHHHHHHHH
Q 043456 83 IKQQSADKEVEVR 95 (447)
Q Consensus 83 lk~~i~~le~~~~ 95 (447)
++++++++.++..
T Consensus 463 i~~EL~~ikkkfg 475 (805)
T PRK05560 463 IKEELLEIKEKFG 475 (805)
T ss_pred HHHHHHHHHHHhC
Confidence 4555555554443
No 249
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.86 E-value=1.5e+02 Score=25.01 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 37 SLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 37 ~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
.|..++.++....+.|+++++...+.|..+
T Consensus 34 eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 34 ELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666655555444
No 250
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.14 E-value=1.3e+02 Score=34.05 Aligned_cols=36 Identities=6% Similarity=0.131 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 73 FSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 73 ~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
...+.+.+..|.++++.+.+..+.+.+++...+..+
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677778888888888888888877776644
No 251
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=49.11 E-value=1.9e+02 Score=25.57 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK 71 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~ 71 (447)
.+..|....+.+..+...|..+...+..++..+.+.|.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~ 39 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGN 39 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46777888888888888888888888888877766653
No 252
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=48.74 E-value=85 Score=33.99 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
+++...++++.+++.+...+.++....|..+-+++.+..
T Consensus 111 ~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ea 149 (514)
T TIGR03319 111 KELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEA 149 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 345555666666666777777777778888888887665
No 253
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.46 E-value=66 Score=26.07 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 71 KDFSEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 71 ~~~~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
++...+..+...+++.+...|+++..+..+
T Consensus 36 e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 36 EARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 355677888999999999999999888764
No 254
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.30 E-value=1.7e+02 Score=29.81 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 42 WRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 42 ~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
++..+.+++++.++.+.+.+.=..++. ...+|.+....|+.+...|.+...-|.....+.+...-|+...++
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~---G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~ 291 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNI---GKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDI 291 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHh---hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCc
Confidence 444555666666665555442111211 123456666666677777777777777777777777788555444
No 255
>PRK07857 hypothetical protein; Provisional
Probab=48.24 E-value=1.2e+02 Score=25.53 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~ 70 (447)
...+.++-++..++-.++=.|-++|-.++.+|++.|+..
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~ 65 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMAS 65 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567777778888888888899999999999999988754
No 256
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=48.22 E-value=1.4e+02 Score=26.88 Aligned_cols=48 Identities=13% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH---HHHHHHHHHHHHHHHHH
Q 043456 45 LQFDVENYRKELNKINKQIAQLKLSGKDFSEMVT---KTNEIKQQSADKEVEVR 95 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~---~~~~lk~~i~~le~~~~ 95 (447)
.+.+++.+..+++.+..++...-+ .+..|+. -..+|+.+|.+|+.+..
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~---~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADK---QIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 445555555555555555543322 2233333 34455555655555555
No 257
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=48.17 E-value=1.2e+02 Score=33.49 Aligned_cols=79 Identities=16% Similarity=0.385 Sum_probs=55.9
Q ss_pred HHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 043456 18 IRESQRRRFA--SVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVR 95 (447)
Q Consensus 18 v~~~l~~R~~--~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~ 95 (447)
+|..+.+|.. ....++++-.+.++.+.+...++.+++.-+.+.+++...+. +...+..++..|+++.+.++.+..
T Consensus 21 LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~---~t~~ll~~~~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 21 LRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKS---ETSDLLEEASELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455533 34557888888888888888888888888888877766543 346688889999888888876655
Q ss_pred HHHH
Q 043456 96 EAWA 99 (447)
Q Consensus 96 ~~~~ 99 (447)
.+..
T Consensus 98 ll~~ 101 (618)
T PF06419_consen 98 LLDA 101 (618)
T ss_pred HHHH
Confidence 5543
No 258
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=47.71 E-value=2.6e+02 Score=27.45 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
...+.|..|-++|..+...++.|+++...-..++....+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888889999999999999998888887777766543
No 259
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=47.12 E-value=1.6e+02 Score=27.62 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
++.+...-.+|..+....+.+....+....+..++...+... ..++..++.++.+++..+..+++++..
T Consensus 120 ~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~---~~k~~~~~~ei~~~~~~~~~~~~~~~~ 188 (236)
T PF09325_consen 120 IESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNR---QDKVEQAENEIEEAERRVEQAKDEFEE 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555444444444443332111 223444445555555555444444433
No 260
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.96 E-value=2.5e+02 Score=26.41 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+..+..+-.+|-++....+.+.........+..++...+.. ..+++..++.+|.+++......+.++...
T Consensus 100 ~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s---~~~K~~~~~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 100 IGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKT---QQEKLNSLLSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666655555555555555433211 13455666666766666666666655443
No 261
>PRK11020 hypothetical protein; Provisional
Probab=46.78 E-value=1.8e+02 Score=24.78 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCcCCC
Q 043456 47 FDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAA----VKAKLEVVGNLVHDS 115 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~----l~~~~~~lPN~~h~~ 115 (447)
+++.+|..+.-.+..+...+...++ .+ -+.++.+++..|++++..+... +......|-++|...
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd-~~----~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R 72 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGD-AE----KYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSR 72 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 4444444444444444544444432 11 1233444444444444444433 333444555555443
No 262
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.75 E-value=2.1e+02 Score=28.92 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 043456 52 YRKELNKINKQIA 64 (447)
Q Consensus 52 Lr~~rN~isk~I~ 64 (447)
++.+.+.+..++.
T Consensus 177 l~~~~~~L~~e~~ 189 (312)
T smart00787 177 LRDRKDALEEELR 189 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 263
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.71 E-value=2e+02 Score=25.10 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 78 TKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
+++.+++.++..+..++..+...
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 264
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=46.39 E-value=96 Score=33.17 Aligned_cols=66 Identities=11% Similarity=0.197 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 41 KWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
|..-++.++++|++++..+.+.++.+.. +.+..++..+...+.+++..|+..+.-|+.-+..+-..
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELEL-NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444556677777777777777766544 23345567778888888888888888887777666443
No 265
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.34 E-value=2.2e+02 Score=26.36 Aligned_cols=27 Identities=11% Similarity=0.422 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINK 61 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk 61 (447)
|+.+..+..++..++.....+.+.+..
T Consensus 97 L~~~~~~l~~l~~~~~~~~~~l~~l~~ 123 (194)
T PF08614_consen 97 LVELNDELQELEKELSEKERRLAELEA 123 (194)
T ss_dssp -----------------HHHHHHHHHH
T ss_pred ccccccccchhhhhHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 266
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.09 E-value=2.6e+02 Score=27.11 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
..+....+..+..+...+......+...+..|=.|
T Consensus 125 ~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 125 QNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34444555555555555665555666666665444
No 267
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.95 E-value=1.4e+02 Score=33.67 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 29 VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDF----SEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 29 ~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~----~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
..+...|.+|..+.+.++..+...++++-.+...+..++++.+.. ..|++++++.|..=..|-....+||++=..+
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENisl 109 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISL 109 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456889999999999999999999999988888877777654332 2355555555555555555556666654444
Q ss_pred HHhcCCCcCC
Q 043456 105 LEVVGNLVHD 114 (447)
Q Consensus 105 ~~~lPN~~h~ 114 (447)
--.+-++-..
T Consensus 110 QKqvs~Lk~s 119 (717)
T PF09730_consen 110 QKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHh
Confidence 4444444333
No 268
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.75 E-value=2.9e+02 Score=28.03 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVG 109 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lP 109 (447)
|++.|+.|-+-|+++|+.++++..-+...+.-.-..+-
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999888876665554
No 269
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.69 E-value=53 Score=25.26 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
+..+..+..+++.++++++.+...+..+|..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444333
No 270
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=45.49 E-value=1.6e+02 Score=29.15 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQI 63 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I 63 (447)
.++..+..+++.|+.+...+.+.|
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhH
Confidence 333333333333333333333333
No 271
>PTZ00464 SNF-7-like protein; Provisional
Probab=45.21 E-value=2.6e+02 Score=26.52 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
++-|.+..+.+....+..+++.+..+.....+.+.+
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~ 50 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQR 50 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777666666655543
No 272
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=45.20 E-value=1e+02 Score=30.26 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=49.9
Q ss_pred CCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-----EEE
Q 043456 251 PSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-----YQV 325 (447)
Q Consensus 251 ~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-----yr~ 325 (447)
...=|.+.+=+.+|.|.--|-+|....-|.+=|||. ++.+|.- ..+.+.|.+-++.|||. .|-
T Consensus 41 Lgpepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQ-----VilKPsP-------~niq~lYL~SL~~lGId~~~hDIRF 108 (284)
T PF02091_consen 41 LGPEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQ-----VILKPSP-------DNIQELYLESLEALGIDPKEHDIRF 108 (284)
T ss_dssp SSSS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEE-----EEEES---------TTHHHHHHHHHHHCT--CCCS-EEE
T ss_pred cCCCCccccccccCCCCCCCccCCCchHhhhhheeE-----EEEcCCC-------ccHHHHHHHHHHHhCCCccccceeE
Confidence 344599999999999999999998778788888884 4556643 23345556677888885 343
Q ss_pred EEe--cCCCCCcccccccceeeeecCCCceeeEEEe
Q 043456 326 VAI--VSGALNDAAAKKLDLEAWFPASQTYRELVSC 359 (447)
Q Consensus 326 v~~--~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~ 359 (447)
|+= .+-.+|++ -.--|||+.+ .||+..
T Consensus 109 VEDnWEsPtLGAw---GlGWEVWldG----MEITQf 137 (284)
T PF02091_consen 109 VEDNWESPTLGAW---GLGWEVWLDG----MEITQF 137 (284)
T ss_dssp EEE-EEETTTTEE---EEEEEEEETT----CEEEEE
T ss_pred eecCCCCCccccc---ccccEEEECC----EEEEEe
Confidence 331 12223322 2344777766 466553
No 273
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.96 E-value=1.5e+02 Score=31.56 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
.++.|+.+|...|+++..|.++++.+-.+|-|
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 35566666766777777777666666555544
No 274
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=44.92 E-value=2.4e+02 Score=31.89 Aligned_cols=38 Identities=18% Similarity=0.066 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHD 114 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~ 114 (447)
+.++..+...|..-+.++.+|..+|.+++.-.|++.-.
T Consensus 628 krq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~ 665 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDSYC 665 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 45556666777778889999999999999999996554
No 275
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=44.88 E-value=3.8e+02 Score=27.86 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLV 112 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~ 112 (447)
.....+++|+..+...++..+.-+..+.+.++..+++.+ . --++.++|.+.+...+..+..+..+|..+..-|-++.
T Consensus 200 ~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~-l--T~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~ 276 (379)
T PF04518_consen 200 MALAKLEKEREQIRRDIKSCERAKAVLNKQLARVKADAK-L--TSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLS 276 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 456778888888888777777666666665555444321 1 1346778888999999999999999999888888887
Q ss_pred CCCCCCCC
Q 043456 113 HDSVPVSN 120 (447)
Q Consensus 113 h~~vP~g~ 120 (447)
-..+|-++
T Consensus 277 ~~~~~~~~ 284 (379)
T PF04518_consen 277 IQGVSDPD 284 (379)
T ss_pred eecCCCCC
Confidence 76666544
No 276
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.57 E-value=2.2e+02 Score=25.05 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
.+.+..+......+...++.|+.+.....+++.
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544555555555444444444443
No 277
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=44.35 E-value=98 Score=24.81 Aligned_cols=40 Identities=15% Similarity=0.384 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhcC
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRK--------ELNKINKQIAQLKLSG 70 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~--------~rN~isk~I~~~k~~~ 70 (447)
.+.+++.||++|-....+.-.+-. ..|++.++|.++.+.|
T Consensus 17 ~~k~F~~Le~~RE~aIeeav~~c~~g~pFs~d~IN~vT~~mN~LAk~g 64 (84)
T PF10752_consen 17 IIKQFLQLEQQREAAIEEAVSLCKQGEPFSTDKINEVTKEMNELAKQG 64 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHcC
Confidence 467777888777776666555543 5677777777766654
No 278
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.33 E-value=1.2e+02 Score=31.62 Aligned_cols=6 Identities=67% Similarity=0.772 Sum_probs=2.5
Q ss_pred eEEEec
Q 043456 355 ELVSCS 360 (447)
Q Consensus 355 ev~s~s 360 (447)
+|.||+
T Consensus 355 ~lLsss 360 (459)
T KOG0288|consen 355 ELLSSS 360 (459)
T ss_pred EEeeec
Confidence 344443
No 279
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.33 E-value=95 Score=29.03 Aligned_cols=26 Identities=8% Similarity=-0.066 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q 043456 87 SADKEVEVREAWAAVKAKLEVVGNLV 112 (447)
Q Consensus 87 i~~le~~~~~~~~~l~~~~~~lPN~~ 112 (447)
+..|.+++.++++.+..++.+|||.+
T Consensus 75 L~~lr~Ql~emee~~~~llrQLPs~t 100 (211)
T COG3167 75 LEALRAQLAEMEERFDILLRQLPSDT 100 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 45566677778888888999999864
No 280
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.16 E-value=2.2e+02 Score=26.74 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+.+.++-+-..|+.....++.+.+++
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 281
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.83 E-value=1.6e+02 Score=23.07 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043456 44 QLQFDVENYRKELNKINKQ 62 (447)
Q Consensus 44 ~l~~~~~~Lr~~rN~isk~ 62 (447)
.++.+++.|+.+.+.++.+
T Consensus 22 ~Lq~e~eeLke~n~~L~~e 40 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEE 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3444455555554444433
No 282
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=43.81 E-value=1.9e+02 Score=26.49 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcC
Q 043456 80 TNEIKQQSADKEVEVREAWAA-------VKAKLEVVG 109 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~-------l~~~~~~lP 109 (447)
....+++|++|++++..+++- +.++.-..|
T Consensus 107 ~~~s~~~iq~l~k~le~v~~~~P~demT~ed~~ea~P 143 (172)
T KOG3366|consen 107 ESLSKKRIQELEKELEKVKSARPFDEMTMEDLNEAFP 143 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHhCc
Confidence 334456666666666666542 566666777
No 283
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=43.77 E-value=1.7e+02 Score=23.58 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=40.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 28 SVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQ-IAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 28 ~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~-I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
+...+++++.+-.+--......+..-...|.++.+ ++.+. .+...-..-++++|++|..+...+..+...+.
T Consensus 9 d~~d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~---~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 9 DPEDLDEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEAR---ERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447777776665544444444444444554442 32222 23333445566777777777777777776654
No 284
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=43.54 E-value=1.9e+02 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
..+....++.+...+.++..+.++....|..|-+++.+..
T Consensus 112 ~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEA 151 (201)
T PF12072_consen 112 EEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEA 151 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3344455555666777777777777778888887776543
No 285
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=43.41 E-value=1.4e+02 Score=23.76 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 59 INKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 59 isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
..+.|.++...++..+.|..++.+|...-....+.-..+..
T Consensus 19 m~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 19 MRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444555555555555554444444443
No 286
>PRK03918 chromosome segregation protein; Provisional
Probab=43.25 E-value=1.3e+02 Score=34.36 Aligned_cols=13 Identities=15% Similarity=0.062 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 043456 87 SADKEVEVREAWA 99 (447)
Q Consensus 87 i~~le~~~~~~~~ 99 (447)
+..++.++..+++
T Consensus 261 i~~l~~el~~l~~ 273 (880)
T PRK03918 261 IRELEERIEELKK 273 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 287
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.17 E-value=2.3e+02 Score=32.37 Aligned_cols=26 Identities=23% Similarity=0.205 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 37 SLDKKWRQLQFDVENYRKELNKINKQ 62 (447)
Q Consensus 37 ~ld~~~r~l~~~~~~Lr~~rN~isk~ 62 (447)
.|.++++++..+.+++++.+.++.+.
T Consensus 519 ~L~~~~~~~e~~~~~~~~~~~e~~~~ 544 (771)
T TIGR01069 519 KLSALEKELEQKNEHLEKLLKEQEKL 544 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 288
>PRK14127 cell division protein GpsB; Provisional
Probab=43.15 E-value=1.7e+02 Score=24.89 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred hhCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 24 RRFASVDLVDEIISL-DKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 24 ~R~~~~~~vd~i~~l-d~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
-||.+.+-||+++.. -+.+..+..+...|+.+...+..++..
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367766666665542 233444444444444444444444443
No 289
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.12 E-value=2.6e+02 Score=25.49 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
..+..+-..|..+..+.+.+.........+...+.
T Consensus 103 ~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~ 137 (218)
T cd07596 103 QAVKETLDDRADALLTLQSLKKDLASKKAQLEKLK 137 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444445555444444444444443
No 290
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.95 E-value=1.6e+02 Score=29.66 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 37 SLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 37 ~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
.||+++-.+..+++-|+.+...+...+.++.+.- .+...+...+|..+..|..++..+.++|.
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444443321 11122233344444444444444444443
No 291
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.88 E-value=53 Score=26.02 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVS 119 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g 119 (447)
++.++-..||.+|+.||.++.+...++.- .-|+|...||..
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~~qI----k~diPe~kvkFt 44 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKREFQI----KEDIPEKKVKFT 44 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh----ccCCccccCcCC
Confidence 45556667777777777666665544221 125555555544
No 292
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=42.84 E-value=1.6e+02 Score=30.79 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
...+.+++.++++.+++++.++++-
T Consensus 271 ~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 271 KKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777766666554
No 293
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.21 E-value=1.3e+02 Score=28.19 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+...+.+.+..+.+++..||.-+..-+++|
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL 190 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQEL 190 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 294
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.13 E-value=1.7e+02 Score=24.75 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVRE 96 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~ 96 (447)
+-..|+-+-..|.+.+.+
T Consensus 37 EN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 295
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=41.56 E-value=84 Score=28.22 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
++..|++.++.|+..+..+.++++
T Consensus 80 elerLe~~iKdl~~lye~Vs~d~N 103 (157)
T COG3352 80 ELERLEENIKDLVSLYELVSRDFN 103 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333333333333333
No 296
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.18 E-value=1.7e+02 Score=22.76 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 45 LQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
++-++++|+.+.|.++.+...+..+ .+.|..+..+ |+.+.....+++..++-++
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~---reaL~~eneq-------lk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQ---REALERENEQ-------LKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Confidence 4567888888888888776544322 2334444444 4444455555565555444
No 297
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.92 E-value=97 Score=23.74 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 49 VENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 49 ~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
..+++.+.+.+.+++.++ .++...|+.+++.|...-..+++-..
T Consensus 19 ~~~~~~ei~~l~~~i~~l----------~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEEL----------KKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 334445555555544333 33444455555555333344444433
No 298
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.92 E-value=1.5e+02 Score=31.20 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
..+++++.+++++++..+++++..+-..+=.
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998877666544
No 299
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=40.43 E-value=1.1e+02 Score=31.47 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
..+++++++++..++.+...+++++..
T Consensus 33 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 33 ALEKEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544433
No 300
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=40.21 E-value=2.2e+02 Score=32.77 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=35.1
Q ss_pred hhhhcccCCCHHHHHHHHHhhC----------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 5 NLFREEKGGIPEKIRESQRRRF----------ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 5 k~ir~~~~~n~e~v~~~l~~R~----------~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
+.||.+ .+.+.+++.|..+. ++.+-++.|+++-- +|-...+.+.++++..++.++|+.++
T Consensus 376 ~~Ir~s--~~~~~a~~~l~~~~~p~~~~l~r~lte~qa~aIlemrL-~rlt~le~~k~~~e~~~l~~~i~~~~ 445 (869)
T PRK12758 376 KEIEEA--ETWEAVIEAIDKGLEPFKKQFIREVTEDDIVRLTEIKI-KRISKFDSDKADELIARLEAEIAEVK 445 (869)
T ss_pred HHHHcC--CCHHHHHHHHHHhcccchhhhcCCCCHHHHHHHHHhHH-HHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 556744 57788888887765 34444555555543 23444556666666666666655543
No 301
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=40.16 E-value=3e+02 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 51 NYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 51 ~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+|..+.+++.++|..+ +.+..+++.||++-..|+.++...+++.
T Consensus 124 eL~~eI~~L~~~i~~l-------e~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRL-------EEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555443 3456667777777777777777766654
No 302
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.08 E-value=1.8e+02 Score=34.07 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
+-++.++.+..+.+.+.++.+.+.+.++|+.++..
T Consensus 297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e 331 (1074)
T KOG0250|consen 297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDE 331 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34444445555555555555556666667666553
No 303
>PRK00106 hypothetical protein; Provisional
Probab=39.46 E-value=2.2e+02 Score=30.99 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
+++...++++.+.++++..+.++....|..+-+++.+..
T Consensus 132 keLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~ea 170 (535)
T PRK00106 132 QSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEA 170 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 344555566666666666777777777888887776554
No 304
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.29 E-value=2.7e+02 Score=31.88 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 36 ISLDKKWRQLQFDVENYRKELNKINKQ 62 (447)
Q Consensus 36 ~~ld~~~r~l~~~~~~Lr~~rN~isk~ 62 (447)
-.|.++++++..+.+++.+.+.++.+.
T Consensus 523 ~~l~~~~~~~e~~~~~~~~~~~e~~~~ 549 (782)
T PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKL 549 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444443
No 305
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=39.27 E-value=1.7e+02 Score=23.15 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
..+.+|.+++..+...+..++.++...-
T Consensus 35 ~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 35 PDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888877766553
No 306
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.07 E-value=2.4e+02 Score=24.07 Aligned_cols=72 Identities=13% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH--------------------------------------
Q 043456 37 SLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVT-------------------------------------- 78 (447)
Q Consensus 37 ~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~-------------------------------------- 78 (447)
.+..++..++.+++.++++.+.+...+.......+....+..
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 79 -----KTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 79 -----~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
-.+.+++.++.|++....+++.+..+--.+
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 307
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.72 E-value=3.5e+02 Score=25.60 Aligned_cols=36 Identities=8% Similarity=0.034 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~ 70 (447)
+...-...+.+..++++++.......++...+...|
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G 82 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELALSKG 82 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 334444445555555666555555555444444444
No 308
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.61 E-value=2.8e+02 Score=24.59 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
+++-.+...++.+..+++.++.++-.+.+...+.+. .+++|-.....+..-|+.++.+..++.+.
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~---kv~eLE~~~~~~~~~l~~~E~ek~q~~e~ 123 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQE---KVSELESLNSSLENLLQEKEQEKVQLKEE 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555444333211 12333333333444444444443333333
No 309
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=38.56 E-value=1.3e+02 Score=27.33 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 52 YRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 52 Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
|+++.+.+..+|+.+...| |..+- |++...++..+..|+..|..
T Consensus 39 L~~El~~L~~~i~~Ar~~G-DlsEa-------k~~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 39 LEDQLAQARAAYEAAQAIE-DVNER-------RRQMARPLRDLRYLAARRRT 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHCC-ChhHH-------HHHHHHHHHHHHHHHHHHcc
Confidence 3333333334666665555 44442 44455555555555555544
No 310
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.48 E-value=2.1e+02 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
..+++.+.+.+.+++..+++++...
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665544
No 311
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=38.29 E-value=4.5e+02 Score=27.19 Aligned_cols=90 Identities=11% Similarity=0.203 Sum_probs=53.8
Q ss_pred HHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------CCC-------h-h
Q 043456 16 EKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS-------------GKD-------F-S 74 (447)
Q Consensus 16 e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~-------------~~~-------~-~ 74 (447)
+.|-.++.+|-. ++.+.--+|..+..++..++..+......+.+.|+..... ... + .
T Consensus 243 ~~vn~al~~Ri~--et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~ 320 (384)
T PF03148_consen 243 DAVNAALRKRIH--ETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQY 320 (384)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHH
Confidence 444455555521 1233444555666666666666666666666655432210 011 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
.|..|+..|++-+..|..++...+..+..+...
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999998888888887776543
No 312
>PRK09039 hypothetical protein; Validated
Probab=38.29 E-value=3e+02 Score=28.05 Aligned_cols=7 Identities=29% Similarity=0.524 Sum_probs=3.3
Q ss_pred HHHcCCc
Q 043456 316 YQMLKIP 322 (447)
Q Consensus 316 ~~~Lgl~ 322 (447)
+...|+|
T Consensus 300 Li~~Gi~ 306 (343)
T PRK09039 300 LIALGVP 306 (343)
T ss_pred HHHCCCC
Confidence 3345554
No 313
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.27 E-value=2.1e+02 Score=22.88 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK-----DFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~-----~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
..|-.+++..+++...-..|.........++........ +...-..++..+|+++..+...+..++.++..
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555554444444443332111 11224566777888888888888888777654
No 314
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.26 E-value=2.5e+02 Score=26.09 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043456 36 ISLDKKWRQLQFDVENY 52 (447)
Q Consensus 36 ~~ld~~~r~l~~~~~~L 52 (447)
..++++++.+..+...|
T Consensus 87 ~rvrde~~~~l~~y~~l 103 (189)
T PF10211_consen 87 LRVRDEYRMTLDAYQTL 103 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 315
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.24 E-value=2e+02 Score=28.02 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
..+..++.+...+...++.|..+-+..+.....+.. +.+....+++.|...|..+...+..+-+++.
T Consensus 45 ~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~---~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNN---NTERTLQRAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888877777766555433 2344556666666666666655555544444
No 316
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=38.17 E-value=2.1e+02 Score=32.55 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=34.3
Q ss_pred hhhhhcccCCCHHHHHHHHHhhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 4 INLFREEKGGIPEKIRESQRRRF-ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
|+.||++ +.-++.|..|+ ++..-.+.|+++-- ++-.+.+..+++.|..++.++|+.+.+
T Consensus 386 I~iIR~s-----~~~k~~L~~~f~ls~~QaeaIL~mrL-~~L~~le~~~i~~E~~~l~~e~~~l~~ 445 (735)
T TIGR01062 386 IEIIREE-----DEPKTILMERFKLSAIQAEAILNLRL-RHLAKLEEHAIIDEQSELEKERAILEK 445 (735)
T ss_pred HHHHHcC-----hhhHHHHHHhcCCCHHHHHHHHHhHH-HHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4667732 34567777774 44433455555542 222345777777777777777766544
No 317
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=37.74 E-value=1.8e+02 Score=22.58 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~ 70 (447)
+-.+-.++-.++=.|-++|-.++.+|+..|+..
T Consensus 5 lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~~ 37 (74)
T TIGR01808 5 LREEIDRLDAEILALVKRRAEISQAIGKARMAS 37 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444555666678888999999999988753
No 318
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=37.70 E-value=2.6e+02 Score=30.61 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Q 043456 82 EIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVP 117 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP 117 (447)
.|.++|.+||++++.+..++...-..---.-++++|
T Consensus 354 Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiP 389 (832)
T KOG2077|consen 354 KLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIP 389 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 466777777878877777776665542233344454
No 319
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=37.31 E-value=54 Score=38.02 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC---CCccccccCCChhHHHHhhccccCCCCc
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE---GDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~---~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
..+.+-+++++.++|++.|..-.+++ +|. +++|-+.-+ =+.+++.+..++|.
T Consensus 62 ~eiR~~Fl~FF~~~gH~~v~s~pvvp--------rw~---dDllft~Agm~~Fkp~f~~G~~~pp~-------------- 116 (900)
T PRK13902 62 KEMREKFLSFFEKHGHTRIERYPVVA--------RWR---DDVYLTIASIYDFQPWVTSGLVPPPA-------------- 116 (900)
T ss_pred HHHHHHHHHHHHhCCCEEcCCcCcCC--------CCC---CCeeeeecchhhhhHHhcCCCCCCCC--------------
Confidence 34555667777889999997766664 122 123322111 02345444333221
Q ss_pred CeEeeccccccccC-ccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH-cCCc
Q 043456 255 PIRYAGYSSCFRKE-AGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM-LKIP 322 (447)
Q Consensus 255 Plrl~~~s~~fR~E-~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~-Lgl~ 322 (447)
-+++...+|.|.. ...-|++.| ..-=|+|.--|+|-.|+. -.-+=++.+..+.+++.. ||||
T Consensus 117 -~~~~~sQ~CiR~nDldnVG~t~r---H~T~FEMlGn~sFg~~~~--~~YfK~eaI~~a~e~lt~~lgi~ 180 (900)
T PRK13902 117 -NPLVISQPCIRLNDIDNVGRTGR---HLTSFEMMAHHAFNYPDK--EVYWKDETVEYCFEFFTKELGID 180 (900)
T ss_pred -CCceecccccchhhhhhccccCC---chhhhhhccceeeCCCCc--ccccHHHHHHHHHHHHHhhcCCC
Confidence 2566667899962 112232211 233478888899988866 444456788889999986 9998
No 320
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=37.06 E-value=2e+02 Score=29.34 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEe
Q 043456 90 KEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRT 130 (447)
Q Consensus 90 le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~ 130 (447)
.++++..++.++..+--.|-+++-|.=|- ++.|+++..
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~lLlPkDpn---d~knvilEI 118 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKILLLPKDPN---DDKNIILEI 118 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCcCeEEEE
Confidence 47888899999999999999999887773 455665543
No 321
>PRK13694 hypothetical protein; Provisional
Probab=37.03 E-value=2.2e+02 Score=22.90 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
..++.|+...+++.|..++..++..|+.
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikd 37 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKD 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999999998865
No 322
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.96 E-value=2.5e+02 Score=30.88 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG-------KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~-------~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
.++..+......++.+...|+.+..+..++|..+...= ......-.++..+..+|..|+.++..-...+.++-
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333210 00001123445556666666666666555555444
Q ss_pred Hh
Q 043456 106 EV 107 (447)
Q Consensus 106 ~~ 107 (447)
..
T Consensus 502 ~~ 503 (652)
T COG2433 502 RK 503 (652)
T ss_pred HH
Confidence 33
No 323
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=36.48 E-value=2.9e+02 Score=24.08 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS--------GKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~--------~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+.+..+..-.++.+..++.+..+...+++++..+.++ ++|+++|. ..|-++=+-+|++-..+-+++...
T Consensus 46 ~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV---~~IseQPK~IEkQte~LteEL~kk 122 (126)
T PF07028_consen 46 EELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELV---LRISEQPKFIEKQTEALTEELTKK 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH---HHHHhCcHHHHHHHHHHHHHHHHH
Confidence 4555566666666666777777777777777766552 23444444 344556666777777777776655
Q ss_pred HH
Q 043456 105 LE 106 (447)
Q Consensus 105 ~~ 106 (447)
+-
T Consensus 123 V~ 124 (126)
T PF07028_consen 123 VD 124 (126)
T ss_pred Hh
Confidence 43
No 324
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.46 E-value=1.7e+02 Score=25.73 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.++.--...+.+....+.+.+..-.+++..=. . ....+.+++++...-.+++.|+.+...++.+...+
T Consensus 21 ~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~--~-~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 21 AFVKSLPQVQELQQEREELLAENEELAEQNLS--L-EPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHGGGGS--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcc--c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555544444443211 0 11234455555555566666666666665555544
No 325
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.40 E-value=2.2e+02 Score=33.15 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCC
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEA 123 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~ 123 (447)
.+++++...+|++-......+....+.|.+.--.+|+...|.-|++.+++
T Consensus 321 ~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~e 370 (1072)
T KOG0979|consen 321 EEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQE 370 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHH
Confidence 34455555666666666666666777777777889999999999987643
No 326
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.22 E-value=2e+02 Score=32.71 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=2.9
Q ss_pred CCeEecCC
Q 043456 192 SYTLLHTP 199 (447)
Q Consensus 192 G~~~v~~P 199 (447)
|..++.-|
T Consensus 849 gadple~p 856 (1265)
T KOG0976|consen 849 GADPLEDP 856 (1265)
T ss_pred CCccccCc
Confidence 33333333
No 327
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.18 E-value=2.6e+02 Score=29.61 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAW 98 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~ 98 (447)
+++...+...+|.+|++++..|.
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Confidence 33444445555566665555543
No 328
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=36.17 E-value=2.9e+02 Score=29.52 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=27.8
Q ss_pred hhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 4 INLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
|+.++ .+.|.++.-+.+.+.. .+++-.+.+++-++..+++.+..+..++.|.|+
T Consensus 346 i~~L~----~~~d~L~~q~~kq~Is---~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 346 IKALQ----SNIDELHKQLRKQGIS---TEQFELMNQEREKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred HHHHH----hhHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44555 5556666665555543 234555555555555555555544444444443
No 329
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=36.14 E-value=2.8e+02 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 41 KWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
+...++.++-.|.++|--=+..+.
T Consensus 15 ev~glq~K~~~L~~erc~Daqrle 38 (120)
T PF10482_consen 15 EVQGLQNKLLELKKERCLDAQRLE 38 (120)
T ss_pred HHHHHHHHHHHHhHHHcccHHHHH
Confidence 444444555555554444444333
No 330
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=36.10 E-value=1.6e+02 Score=30.88 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
..+++++++++.+++..+++++..+-..+=.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999998777655433
No 331
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.10 E-value=1.8e+02 Score=28.66 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL------SG----KDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~------~~----~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
|.++...-.-...++.+++=||...+++......... .+ ........++..+.+++++.+++++++.+++
T Consensus 151 l~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 151 LKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455556666677766666654321110 00 0122334555556666666666666666666
Q ss_pred HHHHHhcCCC
Q 043456 102 KAKLEVVGNL 111 (447)
Q Consensus 102 ~~~~~~lPN~ 111 (447)
.+..-+|.++
T Consensus 231 ~e~~~rl~~l 240 (269)
T PF05278_consen 231 TEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 332
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=35.85 E-value=70 Score=25.48 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+++++-++|-++|..||.++..+|....+
T Consensus 6 ~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 6 ELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777788888888888777666
No 333
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.79 E-value=3.1e+02 Score=25.43 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
.+|..+..++++|+.+...+.+++...... |. +.+..+++++..+........+.+..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~--Dp----~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSEN--DP----EKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456666677777777777777776644332 11 1233444444444444444444444443
No 334
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.68 E-value=3.9e+02 Score=25.36 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFS---EMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLV 112 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~---~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~ 112 (447)
+.++-|.+..++..++.+.+++.+.|+++.+.+ |.. -|-.++-+.++.++.|.. =..+++...+.|-|-+
T Consensus 23 iRke~r~ldrqir~iqree~kv~~~iK~aAKkn-D~~t~~iLAKEiv~srk~v~Rly~----sKAqlnSv~M~l~eql 95 (227)
T KOG3229|consen 23 IRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKN-DKDTCRILAKEIVQSRKAVKRLYE----SKAQLNSVSMQLKEQL 95 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHH----hHHHHhhHHHHHHHHH
Confidence 455667778888899999999999999876654 332 233444455555554433 3334445555554443
No 335
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=35.65 E-value=74 Score=36.34 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCCc
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
.+.+.+-+++.|...||+|+.+-.|++.+....-| ++. ....+.+. .+.=+|++|-=+++....+... ....-
T Consensus 489 ~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~-~~~---~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~-~~~~~ 563 (791)
T PRK00629 489 AQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFG-LNP---EPLLLLNPISEELSVMRTSLLPGLLEAVAYNL-NRGNK 563 (791)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcC-CCC---CeEEEeCCCchHHHHHHHhhHHHHHHHHHHHH-hCCCC
Confidence 34445566788899999999999999997766433 221 23445443 2334777765555544333222 24467
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHH-----HHHHHHHHHHHHHHHHcCCc
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSW-----DMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~-----~~~~~~~~~~~~i~~~Lgl~ 322 (447)
|++++++|.+|.... +. .+|-.+. ...++.......| ..|..+....+.++..||++
T Consensus 564 ~i~lFEiG~Vf~~~~--------~~--~~e~~~l-a~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 564 DVALFEIGRVFLPDG--------DL--PREPEHL-AGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLP 625 (791)
T ss_pred CEeEEeeeeeeCCCC--------CC--CcchhEE-EEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 999999999995421 00 0111111 1223332110011 13778888999999999986
No 336
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.45 E-value=2e+02 Score=22.03 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAW 98 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~ 98 (447)
++.-.+....++|+.+-..+..+...... +...|+++...-+.+|..+-..+..++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~---ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWRE---ERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33333444444444444444444433322 123344444444444444444444433
No 337
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.41 E-value=2e+02 Score=33.50 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
+.|..+..++++++...+.++..++.++..+-..+||+-..-+
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888899999999999999999999999998855443
No 338
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.33 E-value=1.1e+02 Score=22.64 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 043456 82 EIKQQSADKEV 92 (447)
Q Consensus 82 ~lk~~i~~le~ 92 (447)
++++.+..+++
T Consensus 25 ~i~~~ve~i~e 35 (55)
T PF05377_consen 25 EISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 339
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=35.33 E-value=2.7e+02 Score=28.53 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 48 DVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+++.=..+|..+.++..++.+.+ ..+.++.+..++.+..|...+..+.+....+
T Consensus 95 RL~~EL~~Rk~L~~~~~el~~~k---~~l~~~~~~k~~~L~~l~~~L~~l~~a~~pl 148 (355)
T PF09766_consen 95 RLEFELEQRKRLEEQLKELEQRK---KKLQQENKKKKKFLDSLPPQLKSLKKAAKPL 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333334444444444443322 3344455555555666666555555554433
No 340
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.20 E-value=3.6e+02 Score=26.12 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=4.3
Q ss_pred HHHHHHhh
Q 043456 18 IRESQRRR 25 (447)
Q Consensus 18 v~~~l~~R 25 (447)
.++.|++|
T Consensus 71 ~RrKLKNR 78 (292)
T KOG4005|consen 71 QRRKLKNR 78 (292)
T ss_pred HHHHHHHH
Confidence 35555555
No 341
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=35.16 E-value=2.6e+02 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCcEEE
Q 043456 301 SWDMHEEMIKNSEEFYQML-KIPYQV 325 (447)
Q Consensus 301 s~~~~~~~~~~~~~i~~~L-gl~yr~ 325 (447)
...+|+.+-..+..+|+.| |-....
T Consensus 1020 f~~~f~~~~~~f~~~~~~l~~~~~~l 1045 (1164)
T TIGR02169 1020 FMEAFEAINENFNEIFAELSGGTGEL 1045 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 4456777777777777766 444443
No 342
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.03 E-value=2.5e+02 Score=31.84 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
.-+++..+..+.+.++..+++++.+.+....++.
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777788888888888887777666665
No 343
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.95 E-value=3.1e+02 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~ 70 (447)
+-....-..+|..+++..+.+.-.+.+.|...++..
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~ 111 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGR 111 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhh
Confidence 333444455566666666666666666666655543
No 344
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.93 E-value=4.1e+02 Score=28.98 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 043456 48 DVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADK 90 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~l 90 (447)
.++++...+..+.+++..+.....+.+++.++..++++++..+
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554433333444444444444444433
No 345
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.76 E-value=2.1e+02 Score=21.97 Aligned_cols=53 Identities=9% Similarity=0.238 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 44 QLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 44 ~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
.++.++..+..+.+.+++.+..+.+.. ...-.+++++.++|.+++...+-+.-
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~---~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRD---AANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777666554432 12233456666666666665555443
No 346
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.72 E-value=59 Score=19.70 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVRE 96 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~ 96 (447)
++..+|..|.+||.++..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456677777777776654
No 347
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=34.57 E-value=2.4e+02 Score=29.30 Aligned_cols=73 Identities=7% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhcC----CChhHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQL--------------KLSG----KDFSEMVTKTNEIKQQSADKEVE 93 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~--------------k~~~----~~~~~l~~~~~~lk~~i~~le~~ 93 (447)
..+|-.+..+....+.+..+.+.+||+...+.... +++. .+...+-++...+..+++.|-++
T Consensus 80 ~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~q 159 (499)
T COG4372 80 RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQ 159 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666655554322 2211 01112334555667777777777
Q ss_pred HHHHHHHHHHH
Q 043456 94 VREAWAAVKAK 104 (447)
Q Consensus 94 ~~~~~~~l~~~ 104 (447)
..+++.+...+
T Consensus 160 r~ql~aq~qsl 170 (499)
T COG4372 160 RRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHH
Confidence 77776666553
No 348
>PLN02678 seryl-tRNA synthetase
Probab=34.33 E-value=2.1e+02 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVVG 109 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~lP 109 (447)
..++++++++|.+++..+++++..+-..|=
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777787888888777766554443
No 349
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=34.28 E-value=4e+02 Score=25.01 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCC--CCCCCC
Q 043456 87 SADKEVEVREAWAAVKAKLEVVGNLVHD--SVPVSN 120 (447)
Q Consensus 87 i~~le~~~~~~~~~l~~~~~~lPN~~h~--~vP~g~ 120 (447)
-.++.+++..|+.++... ..+|+.|.. ++|.+.
T Consensus 151 Eddi~~EldaLese~~~e-~e~PevPs~ep~lPek~ 185 (209)
T KOG2910|consen 151 EDDILAELDALESELEVE-AELPEVPSTEPELPEKE 185 (209)
T ss_pred HHHHHHHHHHHHHHhhhh-hhcCCCCCCCCCccccc
Confidence 344555666666665555 678999987 677654
No 350
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=34.22 E-value=2.4e+02 Score=28.62 Aligned_cols=28 Identities=7% Similarity=0.200 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
+++++-+++.+|+.+++.|++++.+++.
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555566666666666666555543
No 351
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.14 E-value=2.5e+02 Score=23.82 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043456 48 DVENYRKELNKINKQIAQ 65 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~ 65 (447)
++.++....+.+.++++.
T Consensus 9 ~l~~le~~l~~l~~el~~ 26 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGA 26 (110)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444443333
No 352
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=34.08 E-value=4.8e+02 Score=25.86 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043456 41 KWRQLQFDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
..|.....+...|..|..+..+|.+++..
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I~kLk~k 160 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHhc
Confidence 33444456677788889999999987753
No 353
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.98 E-value=1.9e+02 Score=34.70 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDF----SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~----~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
+.++..+...++.+++.++.++..+...|+.......+. .++..+..+++.++..+...+..++.....+-..+||
T Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 930 (1163)
T COG1196 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555554443322111 1223333334444444444444433444444444555
Q ss_pred CcCCCCC
Q 043456 111 LVHDSVP 117 (447)
Q Consensus 111 ~~h~~vP 117 (447)
....-.+
T Consensus 931 ~~~~~~~ 937 (1163)
T COG1196 931 LEEELEE 937 (1163)
T ss_pred HHhhhcc
Confidence 5544443
No 354
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.95 E-value=1.4e+02 Score=26.93 Aligned_cols=57 Identities=11% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 43 RQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 43 r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.+...+..+|++|+.++.+|.+..... ++ -++-..++.++..++++++++.+++...
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~q-De----FAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQ-DE----FAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TT-TS----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666654433111 12 2344456777777777777777766554
No 355
>PRK01156 chromosome segregation protein; Provisional
Probab=33.87 E-value=2.7e+02 Score=32.09 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 42 WRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 42 ~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
..+++.+++.++.+.+.+..+|+.+
T Consensus 638 l~~~~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 638 IQENKILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555544
No 356
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.83 E-value=2.2e+02 Score=29.19 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 84 KQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 84 k~~i~~le~~~~~~~~~l~~~~ 105 (447)
.+++.+++.++..++.++...-
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 357
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=33.78 E-value=5.1e+02 Score=27.28 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhhhcccCCCHHHHHHH--HHhhCCChhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhc--------
Q 043456 4 INLFREEKGGIPEKIRES--QRRRFASVDLVDEIISLDKKWRQLQF----DVENYRKELNKINKQIAQLKLS-------- 69 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~--l~~R~~~~~~vd~i~~ld~~~r~l~~----~~~~Lr~~rN~isk~I~~~k~~-------- 69 (447)
++.|| |.+|....+++ -.-| .+.|+--..+.++...+.+ ++++|.++...+++++.+-...
T Consensus 164 m~ki~--Klen~t~~kq~~leQLR---re~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia 238 (552)
T KOG2129|consen 164 MNKIR--KLENKTLLKQNTLEQLR---REAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIA 238 (552)
T ss_pred HHHHH--HhhhhhHHhhhhHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhh
Q ss_pred ------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 70 ------GKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 70 ------~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
+++...++.-+..|+.++..|...+...+.+-...+.+.
T Consensus 239 ~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy 283 (552)
T KOG2129|consen 239 KIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQY 283 (552)
T ss_pred cCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 358
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.72 E-value=2.8e+02 Score=23.12 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
+..+...+...|+.|+++...+++++.
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 359
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.63 E-value=3.1e+02 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.333 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSAD 89 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~ 89 (447)
+.+.+|.+.+..++.++++|..+++.|.+++...-. |. -+.+--+++..|+=+..
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFa-G~-Sq~lA~RVqGFkdYLvG 58 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEMRTSFA-GQ-SQDLAIRVQGFKDYLVG 58 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cc-hHHHHHHHhhhHHHHHH
Confidence 457788999999999999999999999998864322 11 13344455555555443
No 360
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=33.42 E-value=65 Score=37.84 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
..++.+.++...++++++.++.+...+.+.++.
T Consensus 922 ~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N 954 (995)
T PTZ00419 922 DEFIDLKKELAKLEKKLAKLQKSLESYLKKISI 954 (995)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345567777778888888888887777776643
No 361
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=33.40 E-value=1.9e+02 Score=28.34 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=42.8
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
=|.+.+=+.+|.|.=-|-+|....-|.+=+||. ++.+|.- ..+.+.|.+-++.|||.
T Consensus 45 epw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQ-----ViiKPsP-------~niQelYL~SL~~lGid 101 (279)
T cd00733 45 EPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQ-----VIIKPSP-------DNIQELYLESLEALGIN 101 (279)
T ss_pred CcceeccccCCCCCCCCCcCCCchhhhhheeeE-----EEECCCC-------ccHHHHHHHHHHHhCCC
Confidence 488888889999999999997777788888884 4566654 23445566677888885
No 362
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=33.29 E-value=3.6e+02 Score=30.22 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
|++.+-|+..+.++.+-+.|-.++=.-+..|+++.
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLR 480 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLR 480 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56667777777777777777766655555555543
No 363
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.21 E-value=4.4e+02 Score=26.76 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 45 LQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
+..++++++.+......++...+...... ..-.++...-..+.+|+.++..++.++..+....++- ||.|
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~-d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~-~P~v 244 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVF-DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQ-NPQV 244 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCch
Confidence 34455555555555555555544432211 1222344455667777777777777776654433332 5555
No 364
>PRK11281 hypothetical protein; Provisional
Probab=33.11 E-value=3.6e+02 Score=32.25 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD----------FSEMVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~----------~~~l~~~~~~lk~~i~~le~~~~~~ 97 (447)
+.++++.+..++..++++++++.-++..+..+++..+++.... ...|-++..++.+++++..+.+..+
T Consensus 70 ~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 70 ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666666666666677777766653111 1234444444455555555555444
No 365
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=32.55 E-value=2.3e+02 Score=31.44 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---cC------C--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 43 RQLQFDVENYRKELNKINKQIAQLKL---SG------K--DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 43 r~l~~~~~~Lr~~rN~isk~I~~~k~---~~------~--~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+.++.+++.+.++..++.+++..+.. +. . ...++.++..++++++.+++.++.++++.+.+..
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555433221 11 1 2345666778888888888888888888776554
No 366
>PLN02943 aminoacyl-tRNA ligase
Probab=32.46 E-value=76 Score=37.13 Aligned_cols=68 Identities=7% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK-LSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k-~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+.++.++++...+.++++.++.+...+.+.++... .++.. .+ -...-+++++++++++..+++.+..+
T Consensus 882 ~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP-~e---vv~~e~~kl~~~~~~l~~~~~~l~~l 950 (958)
T PLN02943 882 ADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAP-ED---VVRGVREKAAEAEEKIKLTKNRLAFL 950 (958)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777777776654311 01111 11 12233444555666666665555443
No 367
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=32.40 E-value=1.1e+02 Score=22.92 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
.+++..||++|++|+.+..+++.+=.-+-...|.-.-..+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q~ 52 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNASPEQLAQL 52 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455666777777777777776654444444444443333
No 368
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=32.35 E-value=1.8e+02 Score=20.91 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
++|+..+...+.+++..+.+++++++=++.++.+|
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rV 37 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRV 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777778888888888887765
No 369
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.05 E-value=28 Score=29.61 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=15.7
Q ss_pred cccCCcccCcCCCceeecCC
Q 043456 414 VEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 414 i~iP~~L~py~~g~~~i~~~ 433 (447)
++||.||+|+. +.++|..
T Consensus 18 ~~~P~~lap~~--v~Ii~~~ 35 (121)
T cd00858 18 LRLPPALAPIK--VAVLPLV 35 (121)
T ss_pred EEcCCCcCCcE--EEEEecC
Confidence 69999999998 7888875
No 370
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.04 E-value=4.7e+02 Score=30.64 Aligned_cols=90 Identities=12% Similarity=0.234 Sum_probs=52.1
Q ss_pred HHHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------C-C--
Q 043456 16 EKIRESQRRRFASV-DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS--------------------G-K-- 71 (447)
Q Consensus 16 e~v~~~l~~R~~~~-~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~--------------------~-~-- 71 (447)
+.++..+..+...+ .+.+.+-.+..+|++...+.+.|+.+.|.+..++-..-.. + .
T Consensus 688 ~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~ 767 (1200)
T KOG0964|consen 688 DEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYF 767 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444443211 2356667777778888888888888877777664321110 0 0
Q ss_pred ------Ch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 72 ------DF-----SEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 72 ------~~-----~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+. .+-.++++.|..+|.++..++..+.++..++.
T Consensus 768 e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~ 812 (1200)
T KOG0964|consen 768 ESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE 812 (1200)
T ss_pred HHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01245667777888888888877776655533
No 371
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.91 E-value=3.5e+02 Score=23.69 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
++..++.-+.++.-.++.++++|+.-++++...+..++.
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456788888889999999999999999888887766644
No 372
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=31.87 E-value=1.3e+02 Score=29.46 Aligned_cols=24 Identities=13% Similarity=0.082 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 84 KQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 84 k~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
+.++..++.++..++.++...-..
T Consensus 108 ~~~~~~~~~~l~~~~~~l~~~~~~ 131 (322)
T TIGR01730 108 KAAVEAAQADLEAAKASLASAQLN 131 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444443333
No 373
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.85 E-value=3e+02 Score=32.95 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINK 61 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk 61 (447)
++-.+.++...++.+++.++...+.+..
T Consensus 829 ei~~l~~~~~~~~~~~~~l~~~~~~~~~ 856 (1163)
T COG1196 829 EIEELEEEIEELEEKLDELEEELEELEK 856 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444444444444444444443333
No 374
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=31.69 E-value=1.1e+02 Score=35.07 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=75.4
Q ss_pred HHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCCcCeEee
Q 043456 182 NFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYA 259 (447)
Q Consensus 182 ~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~ 259 (447)
+-+++.|...||+|+.+-.|++.+.++.-|.... +....+.+. .+.=+|+++-=+++....+.. .....-|++++
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~--~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N-~~~~~~~~~lF 574 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKL--ENLVEIKNPLSNERSVLRTSLLPSLLEVLAYN-QNRKNKDVKIF 574 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCC--CceEEEeCCCchHHHHHHHhhHHHHHHHHHHH-HhCCCCCEeEE
Confidence 4567788999999999999999976665543211 124556543 233477776544454433222 23446789999
Q ss_pred ccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHH------HHHHHHHHHHHHHHHHcCCc
Q 043456 260 GYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSW------DMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 260 ~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~------~~~~~~~~~~~~i~~~Lgl~ 322 (447)
++|.+|.... . + .+|..+. ...++......+| .-|..+....+.++..||++
T Consensus 575 EiG~V~~~~~-----~--~---~~e~~~L-a~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 575 EIGKVFAKDG-----L--G---VKEQLRL-AILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred eeecccCCCC-----C--C---cchhhEE-EEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 9999994321 0 1 2222211 1233332110011 13788899999999999986
No 375
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=31.51 E-value=46 Score=27.83 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=36.8
Q ss_pred CCCHHHHHHHcCCccccccccc-cCccceeec-cHHHHHHHHHHHHHHH
Q 043456 140 LKNHVELVELLGIADLKKGADI-AGGRGFYLK-GDGVRLNQALINFGLD 186 (447)
Q Consensus 140 ~~~H~~l~~~~~l~d~~~~~~~-sG~g~y~l~-~~ga~l~~aL~~~~~~ 186 (447)
...-+..|...++|.|+.|-+. +|+|.|.+. ..|..|.+.+..++.+
T Consensus 46 l~~LRRYG~d~~~FsFEAGRRC~tGeG~f~F~t~~~~~if~~v~~~I~~ 94 (102)
T cd01202 46 LLCLRRYGYNSDLFSFESGRRCQTGEGIFAFRCKRAEELFNLLQSYIQE 94 (102)
T ss_pred HHHhHhhccCCCEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence 3444566777889999998884 899998776 8888888888887664
No 376
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=31.51 E-value=1.8e+02 Score=25.40 Aligned_cols=46 Identities=7% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 47 FDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
++.++|.+++..+..++.+ |+.+...+.-++..++.....+..-..
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~----------L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEK----------LKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445566666666666544 344555666677777776666655544
No 377
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.48 E-value=3.1e+02 Score=27.65 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 44 QLQFDVENYRKELNKINKQIAQLKLSGKDFSE-MVT----KTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 44 ~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~-l~~----~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.++.+++.|+.+....+.+..++.+.+-+.+. |-+ -+..|-+++..|+.+-..++.+|..-
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44445555554444444444444444433221 111 24456667777777767776666553
No 378
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.26 E-value=4.4e+02 Score=24.58 Aligned_cols=20 Identities=5% Similarity=0.073 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043456 84 KQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 84 k~~i~~le~~~~~~~~~l~~ 103 (447)
.++|..++.....+++++..
T Consensus 158 ~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 158 DKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 379
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.16 E-value=4.7e+02 Score=28.60 Aligned_cols=20 Identities=20% Similarity=0.239 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 043456 301 SWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 301 s~~~~~~~~~~~~~i~~~Lg 320 (447)
..++=.++..-++.+=.+|+
T Consensus 436 l~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 436 LQEEKQELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455554444444554
No 380
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.15 E-value=3.3e+02 Score=29.78 Aligned_cols=15 Identities=7% Similarity=0.271 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENY 52 (447)
Q Consensus 38 ld~~~r~l~~~~~~L 52 (447)
+.++-+.+..+++.+
T Consensus 322 ~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 322 AKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 381
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.13 E-value=33 Score=31.36 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=3.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+.|..+...||+++.+|+.++ .+.+++
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 445555566666666666655 444443
No 382
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.10 E-value=2.5e+02 Score=23.08 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l 101 (447)
++..|-+-+..|..-...+|.++
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444443
No 383
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=30.90 E-value=3.8e+02 Score=26.46 Aligned_cols=19 Identities=21% Similarity=0.220 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043456 83 IKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 83 lk~~i~~le~~~~~~~~~l 101 (447)
....|..++.++..+..++
T Consensus 260 ~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHH
Confidence 3444444444444444443
No 384
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.89 E-value=2e+02 Score=32.65 Aligned_cols=35 Identities=6% Similarity=0.108 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
+++..++|.-++++|+.++.+|..++.+.-..|-|
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITT 469 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccch
Confidence 45555566666666666666666666555444433
No 385
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=30.68 E-value=1.5e+02 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
.+.+||++++.|+....+..-+|-++.--||.
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~ 34 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDLPT 34 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 45566777777777777777777776665554
No 386
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=30.53 E-value=2.6e+02 Score=21.65 Aligned_cols=66 Identities=30% Similarity=0.322 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG-KDFSEMVTKTNEIKQQSADKEVEVRE 96 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~-~~~~~l~~~~~~lk~~i~~le~~~~~ 96 (447)
.++.+..+-.+.+.+..++...+.+.+.+...-..+...+ .+...+......|...-..|...+..
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888888888888888888776554553333 22333444444444444444433333
No 387
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.52 E-value=2.2e+02 Score=32.25 Aligned_cols=67 Identities=13% Similarity=0.291 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL----SGK-------DFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~----~~~-------~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
+.++.+..+.++++.+++.|+.+..+++.++-...- .+. .++-.+.++.+|+.+|+++.+.+..+-.
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567778888888888999998888888877643211 111 1223455666677777776666555433
No 388
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=30.33 E-value=3.1e+02 Score=26.75 Aligned_cols=32 Identities=3% Similarity=0.065 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 73 FSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 73 ~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.+....+...++.+++.++.++..++.++...
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 104 LDDAKAAVEAAQADLEAAKASLASAQLNLRYT 135 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34455666777778888888887777776653
No 389
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=30.26 E-value=61 Score=22.33 Aligned_cols=13 Identities=0% Similarity=-0.115 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 043456 90 KEVEVREAWAAVK 102 (447)
Q Consensus 90 le~~~~~~~~~l~ 102 (447)
+++-+..+|.++.
T Consensus 9 lkqll~rle~eir 21 (46)
T PF08181_consen 9 LKQLLWRLENEIR 21 (46)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 390
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=30.19 E-value=74 Score=27.55 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=28.2
Q ss_pred cccCccceeeccH-------HHHHHHHHHHHHHHHHHHCCCeEe-cCCccC
Q 043456 160 DIAGGRGFYLKGD-------GVRLNQALINFGLDFLEKKSYTLL-HTPFFM 202 (447)
Q Consensus 160 ~~sG~g~y~l~~~-------ga~l~~aL~~~~~~~~~~~G~~~v-~~P~l~ 202 (447)
..++-..|.|.+. .-.....+.+.+.+.|.++||++. ..|+++
T Consensus 13 df~~ykTy~~~~~~~~~~~~~~~~~~~i~~~v~~~L~~~G~~~~~~~aDl~ 63 (151)
T PF13590_consen 13 DFSQYKTYAFVPSSSDPAQSNPLDDQRIQDAVEQELAAKGYRRVPENADLL 63 (151)
T ss_pred CCCCCCeEEEecCCcCccccCcHHHHHHHHHHHHHHHHCCCeecccCCCEE
Confidence 3344455555554 123455677777788999999998 666654
No 391
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.17 E-value=4.6e+02 Score=24.50 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~ 70 (447)
+...-...+.+..++++++.+.....++...+.+.|
T Consensus 46 ~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g 81 (221)
T PF04012_consen 46 LARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG 81 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444555555555555555555544444444
No 392
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.10 E-value=2e+02 Score=30.72 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Q 043456 36 ISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDS 115 (447)
Q Consensus 36 ~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~ 115 (447)
..|.+..+-...++.+-|-+.|.|...+.++.+. +.+. ..+ |.+++.++..|+.++..++.++==+-+-.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~--~ad~-~~K-------I~~~k~r~~~Ls~RiLRv~ikqeilr~~G 406 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKH--HADA-VAK-------IEEAKNRHVELSHRILRVMIKQEILRKRG 406 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444444444556677777888888888887643 2221 222 44444455566666666666666666777
Q ss_pred CCCCCCCC
Q 043456 116 VPVSNDEA 123 (447)
Q Consensus 116 vP~g~~e~ 123 (447)
.|++.||+
T Consensus 407 ~~L~~~EE 414 (508)
T KOG3091|consen 407 YALTPDEE 414 (508)
T ss_pred CcCCccHH
Confidence 78887664
No 393
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=30.06 E-value=2.3e+02 Score=27.85 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=55.3
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-----EEEEEe
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-----YQVVAI 328 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-----yr~v~~ 328 (447)
=|.+.+=+.+|.|.=-|-+|....-|.+=+||. ++.+|.- ..+.+.|.+-++.|||. .|-|+=
T Consensus 49 epw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQ-----VilKPsP-------~niQelYL~SL~~lGid~~~hDIRFVED 116 (283)
T PRK09348 49 EPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQ-----VILKPSP-------DNIQELYLGSLEALGIDPLEHDIRFVED 116 (283)
T ss_pred CccccccccCCCCCCCCCcCCCchhhhhheeeE-----EEEcCCC-------ccHHHHHHHHHHHhCCCccccceeEeec
Confidence 488888889999999899997777788888884 4567654 23445566677888885 444431
Q ss_pred c--CCCCCcccccccceeeeecCCCceeeEEE
Q 043456 329 V--SGALNDAAAKKLDLEAWFPASQTYRELVS 358 (447)
Q Consensus 329 ~--t~dlg~~a~~~~diE~w~p~~~~~~ev~s 358 (447)
. +-.+|++ -.--|||+.+ .||+.
T Consensus 117 nWEsPTLGAw---GlGWEVWldG----MEITQ 141 (283)
T PRK09348 117 NWESPTLGAW---GLGWEVWLDG----MEVTQ 141 (283)
T ss_pred CCCCCccccc---ccceEEEECC----eeeee
Confidence 1 1112322 2345888876 35554
No 394
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.03 E-value=2.9e+02 Score=22.08 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 45 LQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
++-++++|+.+.+.++.++..+... .++|..+..++| .+.....+++..++-++
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~---r~~L~~en~qLk-------~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQ---REELERENNHLK-------EQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 4567777777777777776555432 233444444444 44445555555554443
No 395
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=30.00 E-value=3.7e+02 Score=30.62 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=20.9
Q ss_pred HHHHHhhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 19 RESQRRRF-ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 19 ~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
++.+..++ ++..-.+.|+.+- -++=...+.+.|+.+..++.++|..+.
T Consensus 409 k~~l~~~f~~~~~qa~~Il~m~-L~~Lt~le~~kl~~E~~~l~~ei~~l~ 457 (742)
T PRK05561 409 KANLMARFDLSEIQAEAILELR-LRRLAKLEEIEIRKEQDELRKEIAELE 457 (742)
T ss_pred HHHHHHHhCCCHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444442 2333334444433 222333445555555555555554443
No 396
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=29.90 E-value=3e+02 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
+.+..|..+..+...+..+.|.||.+.|.+.++.+
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888887666544
No 397
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.87 E-value=3.3e+02 Score=22.73 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~ 97 (447)
+.-+++.+..+++.++....-|
T Consensus 77 l~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 77 LRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555444443
No 398
>PF15294 Leu_zip: Leucine zipper
Probab=29.86 E-value=3.9e+02 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQ----SADKEVEVREAWAAVKA 103 (447)
Q Consensus 75 ~l~~~~~~lk~~----i~~le~~~~~~~~~l~~ 103 (447)
.|-..+..+|.+ +...+.....+++.+..
T Consensus 194 dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~ 226 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQDKESQQKALEETLQS 226 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 33344445555555443
No 399
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=29.84 E-value=3.1e+02 Score=28.13 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Q 043456 19 RESQRRRFA-SVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEV 92 (447)
Q Consensus 19 ~~~l~~R~~-~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~ 92 (447)
..+.+.||+ +..-|+.++ .+...+.+.||+++|...+.-+- ++.++..||+-++.+|.
T Consensus 229 ~aaERerglqteaqvek~i------~EfdiEre~LRAel~ree~r~K~----------lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 229 AAAERERGLQTEAQVEKLI------EEFDIEREFLRAELEREEKRQKM----------LKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHhhccchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhh
Confidence 344466776 333233322 23345667777777766542211 34445555555555544
No 400
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=29.55 E-value=2.8e+02 Score=21.86 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcCCChh
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQ----LKLSGKDFS 74 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~----~k~~~~~~~ 74 (447)
++.|+...+++.|..++..++..|+. +|..|=|..
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K 42 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTK 42 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 56778888889999999888888764 444554443
No 401
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.35 E-value=1.9e+02 Score=20.65 Aligned_cols=30 Identities=27% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCC
Q 043456 82 EIKQQSADKEVEVREAWAAV--KAKLEVVGNL 111 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~~~~l--~~~~~~lPN~ 111 (447)
.||.++..|+.++..|+..+ +..+...||-
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G 34 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKAELFPNG 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 34445555555555554443 3345566764
No 402
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=29.19 E-value=4.5e+02 Score=24.03 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 45 LQFDVENYRKELNKINKQIAQLKLSGKDFSEM-VTKTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l-~~~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
+....++|++....+.+.....-.+ -...| ++.+..+.+.|.++..++.++...+..++.
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~--~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~ 106 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEE--YVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLL 106 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555566655555554433222111 01223 245566777777777777777777765543
No 403
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.16 E-value=4.8e+02 Score=24.38 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKEL 56 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~r 56 (447)
...|..|-++..+++.++++++.+-
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~EN 35 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKEN 35 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777776664
No 404
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=29.14 E-value=2.5e+02 Score=23.71 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l 101 (447)
++.+++.+|..|+.++..|++++
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 84 EMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777776654
No 405
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=29.07 E-value=1.3e+02 Score=25.35 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
.++++..||.+|.+|++....|+++
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777765
No 406
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=29.06 E-value=3.1e+02 Score=26.22 Aligned_cols=32 Identities=9% Similarity=0.358 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
+.+-.|..+.+.+....+....+...++.++.
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~ 123 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLK 123 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666655555543
No 407
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.02 E-value=3.1e+02 Score=31.98 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHc
Q 043456 300 DSWDMHEEMIKNSEEFYQML 319 (447)
Q Consensus 300 ~s~~~~~~~~~~~~~i~~~L 319 (447)
..+.+|..+-..+.++|.+|
T Consensus 1017 ai~~TFkqV~knFsevF~~L 1036 (1200)
T KOG0964|consen 1017 AIDLTFKQVKKNFSEVFSRL 1036 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999988
No 408
>PTZ00464 SNF-7-like protein; Provisional
Probab=29.01 E-value=1.9e+02 Score=27.47 Aligned_cols=32 Identities=9% Similarity=-0.087 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHH-----HHHhcCCCcCCCCCCCC
Q 043456 89 DKEVEVREAWAAVKA-----KLEVVGNLVHDSVPVSN 120 (447)
Q Consensus 89 ~le~~~~~~~~~l~~-----~~~~lPN~~h~~vP~g~ 120 (447)
+|+.++..|+.++.. .+...|+.|...+|.|+
T Consensus 161 ELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~~~ 197 (211)
T PTZ00464 161 EMLGELDALDFDMEKEADASYLADALAVPGTKLPDVP 197 (211)
T ss_pred HHHHHHHHHHHHHhccccchhhhccccCCCCCCCCCC
Confidence 445555555554321 23345566665555554
No 409
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=28.93 E-value=4.9e+02 Score=24.64 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
.+..+.++...++.+++.+..+|..-+.+.+
T Consensus 144 ~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~ 174 (221)
T PF05700_consen 144 MLKRLEKELAKLKKEIEEVNRERKRRQEEAG 174 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566666666667776666666555544
No 410
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=28.92 E-value=1.9e+02 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=16.7
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 25 RFASVDLVDEIISLDKKWRQLQFDVENYRK 54 (447)
Q Consensus 25 R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~ 54 (447)
-|++.+.+..++.|.++...++.+++.|++
T Consensus 57 ~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~ 86 (91)
T cd04766 57 LGVNLAGVKRILELEEELAELRAELDELRA 86 (91)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666655555555555555543
No 411
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=28.92 E-value=1.4e+02 Score=25.30 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=34.5
Q ss_pred eEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcc
Q 043456 289 EQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDA 336 (447)
Q Consensus 289 e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~ 336 (447)
|+..=+...+ |..+-..++++|..+...-|..+.++....++.|+-
T Consensus 51 eI~aG~GG~E--A~lfa~~L~~MY~~~a~~~gw~~~~l~~~~~~~~G~ 96 (115)
T PF03462_consen 51 EIRAGAGGDE--ACLFAEELFRMYQRYAERRGWKVEVLDYSPGEEGGI 96 (115)
T ss_dssp EEEE-SSTHH--HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSSSE
T ss_pred EEecCCCchH--HHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCccce
Confidence 3333333444 888889999999999999999999999999888644
No 412
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=28.80 E-value=2.6e+02 Score=27.59 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=42.6
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
=|.+.+=+.+|.|.=-|-+|....-|.+=+||. ++.+|.- ..+.+.|.+-++.|||.
T Consensus 46 epw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQ-----VilKPsP-------~niQelYL~SL~~lGid 102 (293)
T TIGR00388 46 EPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQ-----VVIKPSP-------DNIQELYLDSLRALGID 102 (293)
T ss_pred CcceeccccCCCCCCCCCCCCCchhhhheeeeE-----EEECCCC-------ccHHHHHHHHHHHhCCC
Confidence 488888889999999899997778788888884 4566654 23445566677888885
No 413
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=28.80 E-value=2.2e+02 Score=25.40 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcC
Q 043456 40 KKWRQLQFDVENYRK-ELNKINKQIAQLKLSG 70 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~-~rN~isk~I~~~k~~~ 70 (447)
+-+.+++.+++.|+. +|-++.+++..+...+
T Consensus 10 ~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~g 41 (157)
T PRK00226 10 EGYEKLEEELEELKTVERPEIIEAIAEAREHG 41 (157)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHcC
Confidence 345677888888876 7888888888776554
No 414
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.50 E-value=3.5e+02 Score=26.37 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
.+...|-++.+++|.+.++|.++++..++.+....
T Consensus 50 ~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 50 ARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44447777777777788888888777777665543
No 415
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=28.24 E-value=4e+02 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043456 82 EIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~~~~l~ 102 (447)
++++.|+.+++.+..+++.+.
T Consensus 139 ~i~e~IKd~de~L~~I~d~iK 159 (163)
T PF03233_consen 139 LIEELIKDFDERLKEIRDKIK 159 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 416
>PRK10869 recombination and repair protein; Provisional
Probab=28.07 E-value=5.8e+02 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=35.0
Q ss_pred CHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 14 IPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 14 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
+|+..+.-|..=+.......++..++++|+++..++++++.......+++.
T Consensus 138 ~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d 188 (553)
T PRK10869 138 KPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQ 188 (553)
T ss_pred CHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444432222456889999999999999999999887666555443
No 417
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.04 E-value=1.9e+02 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.134 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 043456 84 KQQSADKEVEVREAWA 99 (447)
Q Consensus 84 k~~i~~le~~~~~~~~ 99 (447)
+++++++.+.+..+++
T Consensus 20 k~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 20 KKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 418
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.02 E-value=4.3e+02 Score=29.42 Aligned_cols=21 Identities=5% Similarity=0.194 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043456 82 EIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~~~~l~ 102 (447)
+|.+++..++.++..+.+.+.
T Consensus 199 eL~~kl~~l~~~l~~~~e~le 219 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLE 219 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555543
No 419
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=27.98 E-value=5.6e+02 Score=24.78 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
-+.+..|.++++.++.+...|..+++.+...+..+...
T Consensus 32 e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~ 69 (246)
T PF00769_consen 32 EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEE 69 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999988888877766543
No 420
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=27.94 E-value=2.2e+02 Score=24.96 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.2
Q ss_pred HHHHHH
Q 043456 90 KEVEVR 95 (447)
Q Consensus 90 le~~~~ 95 (447)
|+.-+.
T Consensus 53 Leeiln 58 (134)
T PF15233_consen 53 LEEILN 58 (134)
T ss_pred HHHHHH
Confidence 333333
No 421
>PRK15396 murein lipoprotein; Provisional
Probab=27.91 E-value=3.1e+02 Score=21.81 Aligned_cols=22 Identities=5% Similarity=0.049 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 84 KQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 84 k~~i~~le~~~~~~~~~l~~~~ 105 (447)
+.++..-+++.....++|++.+
T Consensus 52 ~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 52 RSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 422
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=27.88 E-value=4.3e+02 Score=23.46 Aligned_cols=31 Identities=0% Similarity=0.009 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
....++.|+.-+..+..++..||..+..+..
T Consensus 102 ~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 102 QPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888776653
No 423
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.87 E-value=5.8e+02 Score=30.78 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 17 KIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60 (447)
Q Consensus 17 ~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~is 60 (447)
.....|+.+|++. +.|..+.++..++..++..+...+..+.
T Consensus 758 ~~~~eL~~~GvD~---~~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 758 QYNQELAGKGVDP---ERIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555566653 3466666666666666666666665554
No 424
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=27.84 E-value=1.3e+02 Score=34.90 Aligned_cols=66 Identities=12% Similarity=0.267 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLK-LSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k-~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
.++..+++...++++++.++.+...+.+.++... .++.. .+ -...-++++++++.++..+++.+..
T Consensus 805 ~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP-~~---vve~e~~kl~~~~~~~~~l~~~l~~ 871 (874)
T PRK05729 805 GLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAP-EE---VVEKEREKLAEYEEKLAKLKERLAR 871 (874)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777777777777777777777776654311 01111 11 1223344555666666666655543
No 425
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.83 E-value=1.8e+02 Score=22.42 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEVEV 94 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~ 94 (447)
..+..+++..|.+++.|+.++
T Consensus 57 ~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 57 NQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666665544
No 426
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.78 E-value=4.3e+02 Score=28.85 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=4.9
Q ss_pred eeeEEEEecCC
Q 043456 287 KVEQFCITSPN 297 (447)
Q Consensus 287 k~e~~~f~~~e 297 (447)
++|+..+|...
T Consensus 362 ~~Elq~LlD~k 372 (546)
T KOG0977|consen 362 SVELQKLLDTK 372 (546)
T ss_pred HHHHHHhhchH
Confidence 34444444443
No 427
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.69 E-value=6.6e+02 Score=29.29 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.9
Q ss_pred hhHHHHHHHH
Q 043456 397 TERTICCILE 406 (447)
Q Consensus 397 i~Rll~allE 406 (447)
|.++.+++=|
T Consensus 846 i~~l~~~~~e 855 (1243)
T KOG0971|consen 846 ITWLVAVLQE 855 (1243)
T ss_pred HHHHHHHHHH
Confidence 4555554444
No 428
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=27.55 E-value=4.3e+02 Score=23.83 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043456 49 VENYRKELNKINKQIAQLK 67 (447)
Q Consensus 49 ~~~Lr~~rN~isk~I~~~k 67 (447)
+...+.+.+.+-+.|+.++
T Consensus 74 ~~~~~eelerLe~~iKdl~ 92 (157)
T COG3352 74 LQDIKEELERLEENIKDLV 92 (157)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 429
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.48 E-value=2.9e+02 Score=24.77 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhc--CCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 53 RKELNKINKQIAQLKLS--GKDFSE----MVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 53 r~~rN~isk~I~~~k~~--~~~~~~----l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
..+.+.+.++...+++. +++.++ ..+++.+++++++++++++..+++.+..-+
T Consensus 22 ~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 22 NIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455566666666543 334433 345566666677777766666666655443
No 430
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.42 E-value=1.9e+02 Score=24.18 Aligned_cols=23 Identities=4% Similarity=-0.023 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 81 NEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
..|+.+++.|+....-+++....
T Consensus 51 ~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 51 DQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHH
Confidence 33444444444333344444333
No 431
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=27.33 E-value=7.2e+02 Score=26.13 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhc---------CCCh------
Q 043456 13 GIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQ----LKLS---------GKDF------ 73 (447)
Q Consensus 13 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~----~k~~---------~~~~------ 73 (447)
...+.|...+++|-.. .=|.--+|..+......++.+.....-.+.+.|.. +|-+ ..++
T Consensus 267 ~Q~~~ve~af~~ri~e--tqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~ 344 (421)
T KOG2685|consen 267 TQADAVELAFKKRIRE--TQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQ 344 (421)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhH
Confidence 3456666666666321 12334455555556666666666666666665542 1110 0111
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 74 --SEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 74 --~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
..|..++-+|+.-+..|+.++.+.++.+..+.
T Consensus 345 AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~ 378 (421)
T KOG2685|consen 345 AQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLV 378 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13677888888888888888888877766554
No 432
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=27.14 E-value=4.5e+02 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=16.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKW-RQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 32 vd~i~~ld~~~-r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
++.|..+.-+- -++..-++.+..+.+.++.++..+
T Consensus 22 LnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~l 57 (140)
T PF04513_consen 22 LNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNL 57 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333 444445555555555555555543
No 433
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.14 E-value=2.5e+02 Score=31.18 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCC
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDE 122 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e 122 (447)
+-.++..|+++....-..+..|+.+|..+-..+-....|..|.|..+
T Consensus 34 mseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse 80 (617)
T PF15070_consen 34 MSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSE 80 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchH
Confidence 44445555555555555555555555555555555557777777654
No 434
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=27.04 E-value=34 Score=34.45 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=51.0
Q ss_pred cceeeeecCCCceeeEEEecccchhhhhhcccEEeccCC----------CCCceeEEEeecccccchhHHHHHHHHh-cC
Q 043456 341 LDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKS----------NEQTKQYVHLLNSTLTATERTICCILEN-YQ 409 (447)
Q Consensus 341 ~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~----------~~~~~~~~htlngt~~ai~Rll~allE~-~q 409 (447)
-||-+|.|-.+.-.|++|+....|+.+-.-.++..+..+ -++ ..+.|+ |-|++++|+.--||.. |=
T Consensus 227 GDilvw~~~l~~a~ELSSmGiRVd~e~L~~Qlk~~g~~dr~~l~~h~~ll~g--~LP~Ti-GgGIGqsRL~M~LL~k~HI 303 (327)
T PRK05425 227 GDILVWNPVLDDAFELSSMGIRVDEEALKRQLKLTGDEDRLELEWHQALLNG--ELPLTI-GGGIGQSRLCMLLLQKAHI 303 (327)
T ss_pred ceEEEEccccCceeeecCcceEecHHHHHHHHHHcCCCccccCHHHHHHHhC--CCCCcc-cccccHHHHHHHHhccchh
Confidence 488999999998899999987777643322222222100 001 134554 6689999999999984 44
Q ss_pred CCCC-cccCCcccCc
Q 043456 410 KEDG-VEVPEVLQPF 423 (447)
Q Consensus 410 ~~~g-i~iP~~L~py 423 (447)
++.. -.||+-..-.
T Consensus 304 gEVq~svW~~~~~~~ 318 (327)
T PRK05425 304 GEVQASVWPDEVREE 318 (327)
T ss_pred cccccccCCHHHHHH
Confidence 4444 3788765443
No 435
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.02 E-value=3.1e+02 Score=21.52 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
...++..+-.+||.++.+|..++......+.+.
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666665555544
No 436
>PRK06285 chorismate mutase; Provisional
Probab=26.97 E-value=3.5e+02 Score=22.04 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
.+.++-.+-.++-.++-.|-++|..++++|+..|+.
T Consensus 8 ~L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~ 43 (96)
T PRK06285 8 RLNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666677788899999999999998875
No 437
>PHA03332 membrane glycoprotein; Provisional
Probab=26.92 E-value=4.6e+02 Score=30.94 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=21.7
Q ss_pred CeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCCh
Q 043456 193 YTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQ 238 (447)
Q Consensus 193 ~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~ 238 (447)
|..+.-|.+++..+ ||++..+-+-.. +..+|+.|-+|-
T Consensus 1069 y~ilvKP~~vNg~~-----~vpds~nVVmgp---Dg~fy~kp~Ceg 1106 (1328)
T PHA03332 1069 YVILVKPTIVNGKV-----CVPDSKNVVMGP---DGKFYAKPECEG 1106 (1328)
T ss_pred eEEecccEEECCee-----EeecCCCeEEcC---CCCEEeCCccCC
Confidence 56667777776553 466654432211 246777776654
No 438
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=26.87 E-value=4.2e+02 Score=28.60 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcC-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 28 SVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQ-IAQLKLSG-KDFSE----MVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 28 ~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~-I~~~k~~~-~~~~~----l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
++..++.+-.|-++......++.+|..-.-++.+. |..+++.. .+.++ +.....+++++++..+.++..+++++
T Consensus 405 dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~l 484 (543)
T COG1315 405 DPEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEEL 484 (543)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666555553 33333321 22222 23333457777777777777777776
Q ss_pred HHH
Q 043456 102 KAK 104 (447)
Q Consensus 102 ~~~ 104 (447)
...
T Consensus 485 e~~ 487 (543)
T COG1315 485 EVV 487 (543)
T ss_pred hhh
Confidence 654
No 439
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.82 E-value=5e+02 Score=26.30 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 84 KQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 84 k~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
++.+.+|++++..|.++...+|..
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~lL~~ 87 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAELLVS 87 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666554
No 440
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.81 E-value=4.2e+02 Score=29.06 Aligned_cols=36 Identities=6% Similarity=0.224 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 73 FSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 73 ~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
....+++..+|++++++...+...+.+++....-.+
T Consensus 214 i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~ 249 (555)
T TIGR03545 214 LQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQL 249 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345667777788888777777777776666655443
No 441
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.67 E-value=5.1e+02 Score=32.07 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
-..+...+.++..++..-+.+++.+-++++.... +++.|...+..++++++.+++.+..+.+.-...+-..++
T Consensus 1055 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~---EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~ 1127 (1486)
T PRK04863 1055 EERARARRDELHARLSANRSRRNQLEKQLTFCEA---EMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKD 1127 (1486)
T ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445567777777778888888887766543 456667777777777777777777777776666655543
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.66 E-value=3.2e+02 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
++-.+..+++.+..+++.++.+.....++|..
T Consensus 830 ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~ 861 (1311)
T TIGR00606 830 EKQEKQHELDTVVSKIELNRKLIQDQQEQIQH 861 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333334444444444433
No 443
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=26.60 E-value=2.4e+02 Score=29.19 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred chhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhcCCChhHHH
Q 043456 3 DINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVEN-----YRKELNKINKQIAQLKLSGKDFSEMV 77 (447)
Q Consensus 3 Dik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~-----Lr~~rN~isk~I~~~k~~~~~~~~l~ 77 (447)
||..++ +..+.+.+.+..=+...+ +-.+-+++.++..++.+ -..+..+++++++.+.+.-+...++.
T Consensus 1 ~~~~~~----~~~~~~~~~~~~~~~~~~----l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~ 72 (367)
T PRK00578 1 MINEIS----ERLKDLDEKLENIRGVLD----VDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELR 72 (367)
T ss_pred CchHHH----HHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEE
Q 043456 78 TKTNEIKQQSADKEV-----EVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIV 128 (447)
Q Consensus 78 ~~~~~lk~~i~~le~-----~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i 128 (447)
+...+++.-.+-++. ....++.++..+-..++++-....+.++.++.+.++
T Consensus 73 ~~~~e~~~~~ell~~e~D~el~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~l 128 (367)
T PRK00578 73 QRLDDLEELLELAEEEDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAIL 128 (367)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEE
No 444
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=26.46 E-value=3.4e+02 Score=23.72 Aligned_cols=38 Identities=5% Similarity=-0.045 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVH 113 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h 113 (447)
.---++.+...+....+++..++.++..++...||++-
T Consensus 68 ~~~li~kie~~L~~~~dkle~l~~~L~~Li~~nP~iTl 105 (128)
T PF12614_consen 68 FQFLIKKIEAALLQHSDKLEPLEDKLARLIPQNPNITL 105 (128)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHhCCcccH
Confidence 33446677788888888889999999999999999874
No 445
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.42 E-value=3.8e+02 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYR 53 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr 53 (447)
.+.|..+.++..++..++.+|+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK 28 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELK 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333
No 446
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.29 E-value=3.9e+02 Score=22.38 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+..+...+++.+..+++++..+.+++..+.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666655543
No 447
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.21 E-value=7e+02 Score=27.40 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhhCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 14 IPEKIRESQRRRFASVDLV-DEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 14 n~e~v~~~l~~R~~~~~~v-d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
+|+..+..|..-+...+.. +.+-+.++.|+++..+++.++.+..+...++.
T Consensus 137 ~~~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d 188 (557)
T COG0497 137 KPELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRAD 188 (557)
T ss_pred ChHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766665433323 55899999999999999999988877776654
No 448
>PF15219 TEX12: Testis-expressed 12
Probab=26.11 E-value=2.6e+02 Score=22.99 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-------CCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Q 043456 48 DVENYRKELNKINKQIAQLKLS-------GKDF-SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVH 113 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~~k~~-------~~~~-~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h 113 (447)
+-+.|++..|..+|+|.-+-.. ...+ ..-+.++..|=++-..||.-+.+-.+.|.+.+.-|-|-+|
T Consensus 26 k~e~lek~l~d~skEinlmls~yA~ilSEraavd~syi~eiD~lfkEA~~lEnfLkqkre~LrQrlt~isntL~ 99 (100)
T PF15219_consen 26 KDESLEKDLNDMSKEINLMLSTYAKILSERAAVDASYITEIDGLFKEANALENFLKQKRECLRQRLTVISNTLQ 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677778888877643221 1111 1235566667777777787777777777777777766554
No 449
>PHA03011 hypothetical protein; Provisional
Probab=26.02 E-value=3.9e+02 Score=22.32 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADK 90 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~l 90 (447)
++++.+-+|-.++..+..+.+.+..++|-+-.-|..... +.--|.+++..||++++.+
T Consensus 61 ai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d---~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 61 AIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDD---EIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHHHHhcc
No 450
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.01 E-value=4.8e+02 Score=27.38 Aligned_cols=33 Identities=6% Similarity=0.084 Sum_probs=17.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+.+.|..-+--+-++|.+|++++...++.|+++
T Consensus 149 d~eKlrelv~pmekeI~elk~kl~~aE~~i~El 181 (542)
T KOG0993|consen 149 DEEKLRELVTPMEKEINELKKKLAKAEQRIDEL 181 (542)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 333343333344555666666666665555554
No 451
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.99 E-value=4.8e+02 Score=23.31 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
..++-.+..+.-.++.++..|+...+++...+.
T Consensus 12 ~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~ 44 (145)
T COG1730 12 AAQLQILQSQIESLQAQIAALNAAISELQTAIE 44 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666677777777777777666543
No 452
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.99 E-value=5.1e+02 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 83 IKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 83 lk~~i~~le~~~~~~~~~l~~~ 104 (447)
++++...++.++.++..++...
T Consensus 118 ~r~e~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 118 IREEQAKQELKIQELNNKIDTE 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 453
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=25.89 E-value=1.5e+02 Score=26.59 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 043456 41 KWRQLQFDVENYR-KELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVS 119 (447)
Q Consensus 41 ~~r~l~~~~~~Lr-~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g 119 (447)
-++.+..+++.|+ .+|.++.+.|..+...+.-.+. ++-..-|++...++..+..+++.+...-.-=+-.++..|.+|
T Consensus 5 g~~~l~~el~~l~~~~rp~i~~~i~~ar~~gdl~en--aey~aak~~q~~~e~ri~~le~~l~~a~vi~~~~~~~~V~~G 82 (151)
T COG0782 5 GFRKLKEELEYLKPVERPEIVEEIADARELGDLSEN--AEYRAAKEEQAFIERRIRLLEELLRNAQVIDDEKPPDVVTFG 82 (151)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHccchhhC--hhhHHHHHHhcccHHHHHHHHHHhcCceecCCCCCCCEEecC
Confidence 3567778888888 5788899888877665521111 111222666666676666666655544332222333345555
No 454
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=25.86 E-value=1.2e+02 Score=24.26 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCC
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~ 120 (447)
++++++-++-+.|++++..+|++|++.=-.- +.+.+|.|.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~Y---L~~~~~~GN 41 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSY---LEDTSPYGN 41 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHccCcCCC
Confidence 4567777888889999999999988764332 226777773
No 455
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.80 E-value=7.8e+02 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
-.++..|-++++++..+.+.|.+++++++-...++
T Consensus 150 qtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql 184 (499)
T COG4372 150 QTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777788877777777444433
No 456
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.75 E-value=4.1e+02 Score=22.48 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=49.2
Q ss_pred CchhhhhcccCCCHHHHHHHHHhh-CCCh--hh----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 043456 2 LDINLFREEKGGIPEKIRESQRRR-FASV--DL----V-DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDF 73 (447)
Q Consensus 2 lDik~ir~~~~~n~e~v~~~l~~R-~~~~--~~----v-d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~ 73 (447)
+|+..|..+ .|.+.+.+.+..= +++. +. + ..+ .+-.|-+|..++=|-+-+..++..+..+... .
T Consensus 18 iDvd~i~~~--~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~---~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~---~ 89 (118)
T PF13815_consen 18 IDVDRIVRE--LDIDTLQENIENVTFCDLENEDCQHFVDPNF---LKLFRLAQLSIEYLLHCQEYLSSQLEQLEER---L 89 (118)
T ss_pred cCHHHHHhc--cCHHHHHHHHHhcceeccChhhccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 466555522 6777777777653 1111 10 1 112 2334566677777777777777776655432 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
..+.++...++..++.++++++.+.++
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 90 QELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555566666665555555443
No 457
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=25.69 E-value=5.5e+02 Score=27.25 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKE 91 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le 91 (447)
++|.++..+++++++.|+
T Consensus 405 ~kL~~e~~~l~~ei~~l~ 422 (439)
T PHA02592 405 EKLQKEAEELEKEHEYWK 422 (439)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 458
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=25.64 E-value=5.7e+02 Score=28.44 Aligned_cols=89 Identities=21% Similarity=0.229 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhhCCC-------hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----ChhHHHHHHH
Q 043456 14 IPEKIRESQRRRFAS-------VD-LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK----DFSEMVTKTN 81 (447)
Q Consensus 14 n~e~v~~~l~~R~~~-------~~-~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~----~~~~l~~~~~ 81 (447)
+-+.+++.+.+=..+ .+ +-|+|-+.-++.|++..=++.-+.+.|.--..+.+..-... ..-.|.+++.
T Consensus 105 ~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevS 184 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVS 184 (861)
T ss_pred cchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 335667776664322 12 12666666777777776666666555554433332111111 1124788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043456 82 EIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~~~~l~ 102 (447)
+||=.+..+|++-.+.|+++.
T Consensus 185 eLKLkltalEkeq~e~E~K~R 205 (861)
T KOG1899|consen 185 ELKLKLTALEKEQNETEKKLR 205 (861)
T ss_pred HhHHHHHHHHHHhhhHHHHHH
Confidence 999999999877766666543
No 459
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=25.44 E-value=4.1e+02 Score=25.16 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 043456 18 IRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRK------ELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADK 90 (447)
Q Consensus 18 v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~------~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~l 90 (447)
++++|..-+-...+-+++..+..+.+++..++.+++. .||+=-.+|...+-. ++.+.|+..-.+||.++..+
T Consensus 177 mRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~-eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 177 MRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMK-EEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
No 460
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=25.25 E-value=5.9e+02 Score=24.15 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----Ch---hHH-------HHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK-----DF---SEM-------VTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~-----~~---~~l-------~~~~~~lk~~i~~le~~~~~~ 97 (447)
+.+.+.-+..++.+...+..-+.|+..++++..+-..+. |. .+| -....+.|+++.+.|..+..+
T Consensus 46 ~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~ 125 (207)
T PF05546_consen 46 DELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEA 125 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777888888888887655432 22 122 344556777777777777777
Q ss_pred HHHHHHHHH
Q 043456 98 WAAVKAKLE 106 (447)
Q Consensus 98 ~~~l~~~~~ 106 (447)
..+|...++
T Consensus 126 ~~~L~~~Il 134 (207)
T PF05546_consen 126 FDDLMRAIL 134 (207)
T ss_pred HHHHHHHHH
Confidence 666665554
No 461
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=25.11 E-value=63 Score=31.32 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEE---ecCCCCCcccccccceeeeecCCCceeeEEEecccchh
Q 043456 301 SWDMHEEMIKNSEEFYQMLKIPYQVVA---IVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDY 365 (447)
Q Consensus 301 s~~~~~~~~~~~~~i~~~Lgl~yr~v~---~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~ 365 (447)
|.++++..++....++..+||+.+... -...+++..+....|+|...|- .|.|++-+.+.+||
T Consensus 186 a~~~~d~~~~~~~~w~e~~Gi~~~~~~~l~~~~~e~a~y~~~~~d~~~~~~~--~~~E~~g~~dR~~~ 251 (254)
T cd00774 186 ANETLDYFYAFPHGFLELEGIANRGDRFLQHHPNESAHYASDCWDAEKLYVP--GWIEVSGGADRTDY 251 (254)
T ss_pred hHHHHHHHHHHhhhHHHHcCCCcchhHHHhCChhhhhchHHhccCcceeeCC--ceEEEeeeechHHh
Confidence 466778888888889999999866543 3445677777788888876655 58999988888776
No 462
>COG5570 Uncharacterized small protein [Function unknown]
Probab=25.07 E-value=2.4e+02 Score=20.69 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC----hhHHHHHHHHHHHHHHHHHHH
Q 043456 48 DVENYRKELNKINKQIAQLKLSGKD----FSEMVTKTNEIKQQSADKEVE 93 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~~k~~~~~----~~~l~~~~~~lk~~i~~le~~ 93 (447)
.+..|..+--.+-.+|...+....- +.+|+.+--.||++|..|+.+
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666666677777777665421 234555555667777766543
No 463
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=24.88 E-value=6.5e+02 Score=31.68 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
..++..|++++...+.....+..
T Consensus 1313 ~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1313 KSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333333
No 464
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=24.87 E-value=3.9e+02 Score=33.47 Aligned_cols=81 Identities=11% Similarity=0.138 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 29 VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG-KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 29 ~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~-~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
.+++..+..+-++.-+++.++..|+..+-..........++- +....|.++....++.+..|+.+-.-+.+++..+...
T Consensus 1056 a~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1056 ADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345667777777777777777777666655554443333221 1223578889999999999999999999999998887
Q ss_pred cC
Q 043456 108 VG 109 (447)
Q Consensus 108 lP 109 (447)
++
T Consensus 1136 ~~ 1137 (1822)
T KOG4674|consen 1136 SA 1137 (1822)
T ss_pred hh
Confidence 77
No 465
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=24.83 E-value=2.4e+02 Score=32.75 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCC
Q 043456 38 LDKKWRQLQFDVENYRK-ELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV-VGNLVHDS 115 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~-~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~-lPN~~h~~ 115 (447)
..+-+.+++.+++.|+. +|-+++++|+.+...|. ..+ -++=..-|++...++..+..+++.|...-.- .++.+.+.
T Consensus 753 T~eg~~kL~~EL~~L~~v~Rpei~~~I~~Ar~~GD-LsE-NaEY~aAKe~q~~le~RI~eLe~~L~~A~IId~~~~~~d~ 830 (906)
T PRK14720 753 TRRALNKKKKELEHLKDVEMPENSKDIGEAQELGD-LRE-NAEYKAAKEKQQQLQAALKRLEAEIDSAKILDLTDVKTSK 830 (906)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCC-ccc-chhhHHHHHHHHHHHHHHHHHHHHHhcCEEeCcccCCCCE
Confidence 34557788999999986 79999999999877662 111 1122334555566666666666655544221 12334445
Q ss_pred CCCC
Q 043456 116 VPVS 119 (447)
Q Consensus 116 vP~g 119 (447)
|-+|
T Consensus 831 V~~G 834 (906)
T PRK14720 831 VGFG 834 (906)
T ss_pred EEeC
Confidence 5555
No 466
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=24.80 E-value=2.8e+02 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 44 QLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 44 ~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
++=.++.++....+.+.++|+.+|+
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~ 29 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQ 29 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777766554
No 467
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=24.78 E-value=2.7e+02 Score=22.08 Aligned_cols=8 Identities=25% Similarity=0.546 Sum_probs=5.0
Q ss_pred CCcCCCCC
Q 043456 110 NLVHDSVP 117 (447)
Q Consensus 110 N~~h~~vP 117 (447)
.++.+.+|
T Consensus 42 kFts~E~p 49 (76)
T PF07334_consen 42 KFTSPEVP 49 (76)
T ss_pred cCCCCCCC
Confidence 35666666
No 468
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.77 E-value=4.4e+02 Score=22.50 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 73 FSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 73 ~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
.+.+..+++.+.++...+++++..+++++..++..
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788899999999999999999999888765
No 469
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.66 E-value=9.6e+02 Score=26.38 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHc
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV--GNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELL 150 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l--PN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~ 150 (447)
.++..+...+.+++..++.+++-+.+-+...+... +-.+...+|.+. |++.. ..++.++++++..+
T Consensus 565 ~Sm~~Rl~~vEkqv~~le~Kld~l~~~~~q~l~l~~~~~~~~s~~p~~e-----------~~~~s~~~~~~~~r~~~~~~ 633 (654)
T KOG1419|consen 565 LSMMGRLVKVEKQVQSLEKKLDLLVEILMQCLRLMMDTSEAASYSPPKE-----------GEPTSPYHSPEDSRDISDRL 633 (654)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCC-----------CCCCCCCCCcccccCccccc
Confidence 35778888888999999988888877655555443 333334444332 22222 34567777777666
Q ss_pred C-Cccccc
Q 043456 151 G-IADLKK 157 (447)
Q Consensus 151 ~-l~d~~~ 157 (447)
. .++..+
T Consensus 634 ~~~~~~~r 641 (654)
T KOG1419|consen 634 QSIVSISR 641 (654)
T ss_pred ccEEEecc
Confidence 5 445444
No 470
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.65 E-value=4.2e+02 Score=22.18 Aligned_cols=25 Identities=8% Similarity=0.055 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.+.+++.+..++..+..+++++..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~ 113 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKL 113 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 471
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=24.59 E-value=5.8e+02 Score=23.83 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDF 73 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~ 73 (447)
.-.|..+.+.+-.++.+|+.++-.+..+-.++-++++..
T Consensus 40 ~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~ 78 (228)
T PRK06800 40 HEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQF 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666665555554444333
No 472
>PF15456 Uds1: Up-regulated During Septation
Probab=24.51 E-value=4.7e+02 Score=22.67 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKIN 60 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~is 60 (447)
.++|-+|-.+.+.+..+++.++++.+--+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~le~ 49 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLALES 49 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899999999999999998887433
No 473
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=24.46 E-value=5.8e+02 Score=30.55 Aligned_cols=72 Identities=11% Similarity=0.143 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK------DFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~------~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+.++++-+..++-+++++.+++.-++..++.+++...++... ...+|-++..+...++.++.+++....+++
T Consensus 55 ~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 335666666666667777777777777777777765544322 224455555555555555555555444433
No 474
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.32 E-value=4.8e+02 Score=24.10 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 043456 83 IKQQSADKEVEVREA 97 (447)
Q Consensus 83 lk~~i~~le~~~~~~ 97 (447)
+++++++|++++...
T Consensus 158 ~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 158 LEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 475
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=24.08 E-value=6.3e+02 Score=24.05 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---C------CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 29 VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS---G------KDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 29 ~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~---~------~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
.+.++++-....+-.+++..+++.=.+...+.++|..++.. . -...+|-.++.....++..+...+..+..
T Consensus 27 l~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~ 106 (240)
T PF12795_consen 27 LSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENS 106 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777888888888777554 1 12345666666666666666666666655
Q ss_pred HHHH
Q 043456 100 AVKA 103 (447)
Q Consensus 100 ~l~~ 103 (447)
.+..
T Consensus 107 ~l~~ 110 (240)
T PF12795_consen 107 QLIE 110 (240)
T ss_pred HHHH
Confidence 5443
No 476
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=24.06 E-value=6.1e+02 Score=27.35 Aligned_cols=70 Identities=4% Similarity=0.175 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+++.+|+.+.+++..-+..++.-.+..+.+++.... ++..|.++...+..+++.-+.....|..=+++.+
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~---eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ 83 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISS---EIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIV 83 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 567777777777777777777777777666665543 4566777888888888887777777766666655
No 477
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.93 E-value=5.9e+02 Score=23.62 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
+...++.++..++..+..|+.+++..+..|
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~D~~L~ll 137 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKLDKILELL 137 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777776666655
No 478
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.60 E-value=5.7e+02 Score=30.85 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Q 043456 83 IKQQSADKEVEVREAWAAVKAKLEVVGNLVHDS 115 (447)
Q Consensus 83 lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~ 115 (447)
+..++..+..++.....++...+-.+=.--+.+
T Consensus 730 ~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~e 762 (1201)
T PF12128_consen 730 LDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQE 762 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555444433
No 479
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=23.52 E-value=1e+02 Score=26.58 Aligned_cols=18 Identities=6% Similarity=0.077 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 043456 93 EVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 93 ~~~~~~~~l~~~~~~lPN 110 (447)
++..++.++..+...||.
T Consensus 31 ~~~~~~~~l~~~~~~lP~ 48 (144)
T PF04350_consen 31 QLEQLEQQLEELLKKLPA 48 (144)
T ss_dssp HHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 333444444444455553
No 480
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.49 E-value=4.2e+02 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=13.1
Q ss_pred HHHHHHHHHH-HHHHHHHhc--CCCcCCCCCC
Q 043456 90 KEVEVREAWA-AVKAKLEVV--GNLVHDSVPV 118 (447)
Q Consensus 90 le~~~~~~~~-~l~~~~~~l--PN~~h~~vP~ 118 (447)
|..++.+|++ .++..++.+ |-.+-|+||-
T Consensus 162 L~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs 193 (221)
T KOG1656|consen 162 LMAELDELEQEELDKELLDIRAPPVPLPDVPS 193 (221)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence 4444444443 355555552 2233445553
No 481
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.39 E-value=1.5e+02 Score=24.71 Aligned_cols=12 Identities=17% Similarity=0.161 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 043456 90 KEVEVREAWAAV 101 (447)
Q Consensus 90 le~~~~~~~~~l 101 (447)
-++++..+++.|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 482
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.26 E-value=3.5e+02 Score=28.95 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
+.++++++..+++.|+.++..+..+
T Consensus 102 le~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 102 DQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4456677778888887777554444
No 483
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=23.20 E-value=4.5e+02 Score=22.00 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Q 043456 44 QLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDS 115 (447)
Q Consensus 44 ~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~ 115 (447)
-....++.|+++.....+.|.+.... ...|.......+.-+.++.+...+++.+-....-.|++++..+
T Consensus 22 ~qs~~i~~L~a~n~~q~~tI~qq~~~---~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d 90 (110)
T PF10828_consen 22 YQSQRIDRLRAENKAQAQTIQQQEDA---NQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDD 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34466788888877667666554332 2334444555555555555555555555555556666665544
No 484
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.10 E-value=6e+02 Score=23.82 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVP 117 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP 117 (447)
.+++..|..+-.....++..+..++..+=.. -|-+++.+|
T Consensus 153 r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q-~~~~~~~lp 192 (192)
T PF11180_consen 153 RQEAQALEAERRAAQAQLRQLQRQVRQLQRQ-ANEPIPSLP 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCC
Confidence 4444555555555555555555554444322 344444444
No 485
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=22.89 E-value=94 Score=26.13 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHcCCcccccccc-ccCccceeeccH-HHHHHHHHHHHHHHHHHH
Q 043456 148 ELLGIADLKKGAD-IAGGRGFYLKGD-GVRLNQALINFGLDFLEK 190 (447)
Q Consensus 148 ~~~~l~d~~~~~~-~sG~g~y~l~~~-ga~l~~aL~~~~~~~~~~ 190 (447)
..-++|.|+.|-+ .+|+|.|.+.-. +..|.+.+...+...+.+
T Consensus 56 ~~~~~FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v~~~i~~~~~~ 100 (104)
T cd00824 56 YDSNLFSFEAGRRCVTGEGIFTFQTDRAEEIFQNVHETILAAMKA 100 (104)
T ss_pred cCCCEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 3447899998877 599998887755 999999999999887654
No 486
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.87 E-value=5.9e+02 Score=25.17 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT 80 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~ 80 (447)
|-|+|..| ....-|..+| ..+=+++...-..|......-+-.-+.+.+.+.|....++ +..++
T Consensus 116 ~~dlk~~R--------~Laseit~~G---A~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~------~~~~~ 178 (267)
T PF10234_consen 116 IQDLKAAR--------QLASEITQRG---ASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKA------VQQQL 178 (267)
T ss_pred hhhHHHHH--------HHHHHHHHHH---HHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHH------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.++++.+.++......|+.++...
T Consensus 179 ~~~~~~l~~l~~de~~Le~KIekk 202 (267)
T PF10234_consen 179 QQTQQQLNNLASDEANLEAKIEKK 202 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=22.86 E-value=5.7e+02 Score=23.11 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 29 VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFS-EMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 29 ~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~-~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
...++.+-++.....+...+++.|+..+..+..+....+......+ .+.+-=..+..+.++|..++..++.+-..+.+.
T Consensus 32 V~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~ 111 (158)
T PF09744_consen 32 VRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELK 111 (158)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCcCCCCC
Q 043456 108 VGNLVHDSVP 117 (447)
Q Consensus 108 lPN~~h~~vP 117 (447)
+.|..+-..+
T Consensus 112 ~~~~~~q~~r 121 (158)
T PF09744_consen 112 LKNLSDQSSR 121 (158)
T ss_pred hhhhhhhccc
No 488
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.85 E-value=98 Score=33.20 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--------hhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 56 LNKINKQIAQL--------KLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 56 rN~isk~I~~~--------k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
|+.++.-+..+ .....+.+.++ ++.+|+++|++|++++..+.+++...
T Consensus 2 kk~~~l~l~aall~~s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 2 KKLISLSLAAALLFLSLPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred chhHHHHHHHHHHHhccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchh
No 489
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.81 E-value=4.1e+02 Score=21.37 Aligned_cols=72 Identities=14% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHH-------------------HHHHHHHHHHHHHHHHHHHHH
Q 043456 37 SLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEM-------------------VTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 37 ~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l-------------------~~~~~~lk~~i~~le~~~~~~ 97 (447)
++-.++..+..++..+.+.+..+..++......-.+...+ ..-...|+++++.++.++..+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhc
Q 043456 98 WAAVKAKLEVV 108 (447)
Q Consensus 98 ~~~l~~~~~~l 108 (447)
+..+..+.-.+
T Consensus 82 ~~~~~~l~~~l 92 (106)
T PF01920_consen 82 EKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 490
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=22.78 E-value=6e+02 Score=29.78 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
+..++..+.++...+..+++.++.+...+..++..+.. ....+..+...+..++..++.++..++.++...-..+
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~ 304 (1179)
T TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEE---KLEELRLEVSELEEEIEELQKELYALANEISRLEQQK 304 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 491
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.71 E-value=5.9e+02 Score=26.99 Aligned_cols=73 Identities=5% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
...+...+..++.+++.++++.+.+.+++.++...-........+...|..+.+..++....+-+++.+.-..
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=22.50 E-value=3.8e+02 Score=20.95 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
+-++-++-.++-.++-.|-++|..++++|+..|+...-.-.-..+-+++-+.+.++-....--.+.+..++..|
T Consensus 1 L~~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~~g~~i~d~~RE~~v~~~~~~~~~~~~l~~~~i~~if~~i 74 (83)
T TIGR01791 1 IEELRQEIEEIDKSILDLIEKRIKIARKIGEIKHNNGLPITDEEREERVIERLRNTARNLGLDVLKLKEIFEIL 74 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
No 493
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.39 E-value=2.4e+02 Score=29.74 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------------CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLSG--------------------KDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~--------------------~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
++.+.|+.++..|+.+-+++.++++.....- ....---+++.++|++|....-+...+++
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~d 104 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLED 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHhh
Q ss_pred HHH
Q 043456 100 AVK 102 (447)
Q Consensus 100 ~l~ 102 (447)
...
T Consensus 105 a~~ 107 (514)
T PF11336_consen 105 AAE 107 (514)
T ss_pred HHh
No 494
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=22.35 E-value=3.8e+02 Score=20.85 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 043456 14 IPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVE 93 (447)
Q Consensus 14 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~ 93 (447)
|++.+-+.+-+. ..+++|..+.++.+......+ ..-|+.+......+....+++..+...+..++..+.++...
T Consensus 7 d~~~~~~~~l~~----~s~~~i~~~~~~L~~~i~~~~--~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 7 DVDEYFKDLLKN----SSIKEIRQLENKLRQEIEEKD--EELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 043456 94 VREAWA 99 (447)
Q Consensus 94 ~~~~~~ 99 (447)
+..+.+
T Consensus 81 ~~~l~~ 86 (87)
T PF08700_consen 81 IQSLQE 86 (87)
T ss_pred HHHhhc
No 495
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.13 E-value=5.8e+02 Score=26.08 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred cccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 043456 9 EEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSA 88 (447)
Q Consensus 9 ~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~ 88 (447)
++|.+-.-.+++++..|..+.+ +++..-++| .|++-..-+-.++.|.+.+.|-.-+..++++-.
T Consensus 81 ~e~~eglr~i~es~~e~q~e~~-------------qL~~qnqkL---~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~ 144 (401)
T PF06785_consen 81 TEKDEGLRKIRESVEERQQESE-------------QLQSQNQKL---KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQ 144 (401)
T ss_pred HhccHHHHHHHHHHHHHHHHHH-------------HHHHhHHHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 043456 89 DKEVEVREAWAAVKAK 104 (447)
Q Consensus 89 ~le~~~~~~~~~l~~~ 104 (447)
.++-++..+..+..+.
T Consensus 145 ~lqlqL~~l~~e~~Ek 160 (401)
T PF06785_consen 145 CLQLQLDALQQECGEK 160 (401)
T ss_pred HHHHhHHHHHHHHhHh
No 496
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.09 E-value=3.9e+02 Score=28.76 Aligned_cols=68 Identities=9% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhc
Q 043456 41 KWRQLQFDVENYRKELNKINKQIAQLKLS-GKDFSEMVTKTNEIKQQSADKEVEVRE----------AWAAVKAKLEVV 108 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~~~k~~-~~~~~~l~~~~~~lk~~i~~le~~~~~----------~~~~l~~~~~~l 108 (447)
.+..+..+.+.|-...|.++.++..+... ..++...+.++..+-++|.+|++++.. |.++.+.++..|
T Consensus 140 ~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~L 218 (507)
T PRK07739 140 ARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDEL 218 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
No 497
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.06 E-value=5e+02 Score=29.09 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK----DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~----~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
..+-+....++.+.+++..++++.|.+..+++....-+. .-..|+++...|+..+..|-++..+-..++.+...+|
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.03 E-value=3.6e+02 Score=23.60 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 25 RFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 25 R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+..+.+-+.+++.-.+........+.+.+.-...+..-+.....--+..-++..++..+|.++...-.++..++.++...
T Consensus 2 ~~lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 2 QDLSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp GS-TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhc
Q 043456 105 LEVV 108 (447)
Q Consensus 105 ~~~l 108 (447)
....
T Consensus 82 ~~~~ 85 (150)
T PF07200_consen 82 EQQQ 85 (150)
T ss_dssp HHHH
T ss_pred HHHH
No 499
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.94 E-value=2.4e+02 Score=27.32 Aligned_cols=52 Identities=10% Similarity=0.348 Sum_probs=0.0
Q ss_pred hhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 4 INLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQI 63 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I 63 (447)
++-.+ .-.+.+.+-+++-+ .+++++++.++...++.++|+++.+++.+.+++
T Consensus 141 l~~l~----~~~~rl~~ll~ka~----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 141 LKNLE----AEEERLLELLEKAK----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHH----HHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.91 E-value=5.9e+02 Score=26.88 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
.|..|-+-..++..+++.|+.+.++..++..+..+.| -+.-+..-..+.+-+|+.+...-..++.+..-|-+|
T Consensus 234 ~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g-----~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~I 306 (439)
T KOG2911|consen 234 SVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEG-----KKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQI 306 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Done!