Query 043456
Match_columns 447
No_of_seqs 198 out of 1707
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qne_A Seryl-tRNA synthetase, 100.0 2E-121 8E-126 949.7 38.3 437 1-440 1-451 (485)
2 3lss_A Seryl-tRNA synthetase; 100.0 2E-120 6E-125 944.1 40.9 435 1-441 7-477 (484)
3 3vbb_A Seryl-tRNA synthetase, 100.0 2E-118 5E-123 934.6 37.1 438 1-440 2-477 (522)
4 1wle_A Seryl-tRNA synthetase; 100.0 5E-112 2E-116 888.0 41.1 425 1-438 40-480 (501)
5 2dq0_A Seryl-tRNA synthetase; 100.0 4E-109 1E-113 860.9 38.9 423 1-434 1-447 (455)
6 1ses_A Seryl-tRNA synthetase; 100.0 2E-108 5E-113 850.2 33.2 415 1-432 1-419 (421)
7 2dq3_A Seryl-tRNA synthetase; 100.0 9E-107 3E-111 838.4 36.7 421 1-432 1-424 (425)
8 3err_A Fusion protein of micro 100.0 2.8E-98 1E-102 791.4 38.3 348 76-433 178-529 (536)
9 1nj1_A PROR, proline-tRNA synt 100.0 6E-62 2E-66 513.9 18.5 303 105-432 12-322 (501)
10 3mf2_A BLL0957 protein; aminoa 100.0 1.2E-60 4.1E-65 472.9 14.7 246 164-431 54-337 (346)
11 3ial_A Prolyl-tRNA synthetase; 100.0 3E-56 1E-60 468.7 15.7 285 129-433 14-308 (518)
12 2cja_A Seryl-tRNA synthetase; 100.0 2.5E-55 8.6E-60 461.1 22.5 271 139-432 201-521 (522)
13 4hvc_A Bifunctional glutamate/ 100.0 2.8E-54 9.5E-59 454.7 23.7 275 143-433 35-317 (519)
14 1qf6_A THRRS, threonyl-tRNA sy 100.0 1.1E-50 3.7E-55 439.8 11.9 290 121-433 209-548 (642)
15 3uh0_A Threonyl-tRNA synthetas 100.0 4.9E-49 1.7E-53 411.2 21.8 278 137-435 31-356 (460)
16 1nj8_A Proline-tRNA synthetase 100.0 1.2E-45 4.1E-50 386.1 23.9 275 140-432 8-290 (459)
17 1evl_A Threonyl-tRNA synthetas 100.0 1.1E-45 3.8E-50 380.6 14.0 270 141-433 1-307 (401)
18 1hc7_A Prolyl-tRNA synthetase; 100.0 3E-44 1E-48 376.9 20.8 274 140-433 15-296 (477)
19 1nyr_A Threonyl-tRNA synthetas 100.0 3.2E-45 1.1E-49 398.0 11.5 279 138-433 238-554 (645)
20 2j3l_A Prolyl-tRNA synthetase; 100.0 1.9E-42 6.6E-47 371.6 20.2 194 132-338 12-207 (572)
21 1ati_A Glycyl-tRNA synthetase; 100.0 8.5E-43 2.9E-47 368.2 15.9 280 141-433 6-407 (505)
22 3ikl_A DNA polymerase subunit 100.0 2.3E-42 7.8E-47 356.7 15.9 259 143-430 69-354 (459)
23 2i4l_A Proline-tRNA ligase; al 100.0 2E-41 6.8E-46 354.4 21.4 281 135-433 35-374 (458)
24 3a32_A Probable threonyl-tRNA 100.0 1.4E-36 5E-41 318.7 19.2 278 140-433 6-347 (471)
25 1g5h_A Mitochondrial DNA polym 100.0 4.4E-37 1.5E-41 320.2 8.4 272 140-432 24-347 (454)
26 2zt5_A Glycyl-tRNA synthetase; 100.0 3.2E-31 1.1E-35 288.2 17.3 215 141-361 68-409 (693)
27 1qe0_A Histidyl-tRNA synthetas 99.9 1.4E-25 4.7E-30 231.8 16.8 157 162-329 4-165 (420)
28 4e51_A Histidine--tRNA ligase; 99.9 1.2E-21 3.9E-26 205.2 17.9 156 162-330 34-194 (467)
29 1h4v_B Histidyl-tRNA synthetas 99.8 1.9E-20 6.4E-25 193.4 16.1 156 162-328 5-164 (421)
30 1htt_A Histidyl-tRNA synthetas 99.8 7.8E-20 2.7E-24 188.9 14.5 156 162-329 6-166 (423)
31 1wu7_A Histidyl-tRNA synthetas 99.8 1.3E-19 4.5E-24 187.9 15.1 154 162-330 8-165 (434)
32 1z7m_A ATP phosphoribosyltrans 99.8 2.8E-18 9.6E-23 172.8 14.5 154 162-329 24-181 (344)
33 3dsq_A Pyrrolysyl-tRNA synthet 99.7 1.1E-16 3.7E-21 157.3 16.9 191 177-406 73-266 (288)
34 3rac_A Histidine-tRNA ligase; 99.7 4.3E-17 1.5E-21 165.7 13.8 162 162-331 25-189 (373)
35 3od1_A ATP phosphoribosyltrans 99.7 2.8E-16 9.6E-21 161.2 14.5 151 162-326 12-164 (400)
36 3lc0_A Histidyl-tRNA synthetas 99.6 6.4E-16 2.2E-20 161.0 13.0 154 162-330 31-189 (456)
37 3net_A Histidyl-tRNA synthetas 99.6 2.3E-14 7.9E-19 149.8 15.0 165 146-329 3-185 (465)
38 4g84_A Histidine--tRNA ligase, 99.5 1.2E-13 4.1E-18 144.1 14.3 153 163-329 17-170 (464)
39 4g85_A Histidine-tRNA ligase, 99.5 1.1E-13 3.9E-18 146.4 13.1 153 164-330 71-224 (517)
40 3qtc_A Pyrrolysyl-tRNA synthet 99.3 1.7E-11 6E-16 120.3 13.7 133 177-326 79-213 (290)
41 1usy_A ATP phosphoribosyltrans 99.2 1.2E-11 4.2E-16 120.5 7.3 125 179-332 5-133 (275)
42 1nnh_A Asparaginyl-tRNA synthe 98.8 6E-08 2E-12 95.3 14.2 124 171-311 12-139 (294)
43 1b7y_A Phers, protein (phenyla 98.2 2.9E-05 1E-09 77.7 16.2 159 179-360 105-284 (350)
44 1wyd_A Hypothetical aspartyl-t 98.2 7.7E-06 2.6E-10 84.2 11.1 115 172-310 132-247 (429)
45 3a5y_A GENX, putative lysyl-tR 98.1 5E-06 1.7E-10 83.3 8.6 119 172-312 34-158 (345)
46 1eov_A ASPRS, aspartyl-tRNA sy 98.1 1E-05 3.4E-10 84.7 11.0 116 172-310 176-293 (487)
47 3l4g_A Phenylalanyl-tRNA synth 98.1 5.7E-05 2E-09 78.8 16.1 196 178-402 228-466 (508)
48 1x54_A Asparaginyl-tRNA synthe 98.1 1.5E-05 5E-10 82.3 10.8 115 172-310 133-248 (434)
49 3a74_A Lysyl-tRNA synthetase; 98.0 2.4E-05 8.3E-10 81.8 11.1 116 172-310 172-289 (493)
50 1n9w_A Aspartyl-tRNA synthetas 98.0 1.4E-05 4.7E-10 82.2 8.7 117 172-311 123-240 (422)
51 1e1o_A Lysyl-tRNA synthetase, 97.9 3.8E-05 1.3E-09 80.6 10.8 117 172-311 181-299 (504)
52 3nem_A Aspartyl-tRNA synthetas 97.8 7.3E-05 2.5E-09 77.1 11.3 119 172-311 135-253 (438)
53 2du3_A O-phosphoseryl-tRNA syn 97.8 0.00038 1.3E-08 73.0 16.5 145 230-403 181-336 (534)
54 3i7f_A Aspartyl-tRNA synthetas 97.8 7.1E-05 2.4E-09 78.9 10.9 116 172-310 242-359 (548)
55 2xgt_A Asparaginyl-tRNA synthe 97.8 4.1E-05 1.4E-09 79.0 8.9 117 172-311 130-246 (435)
56 3bju_A Lysyl-tRNA synthetase; 97.8 4.5E-05 1.5E-09 80.3 9.0 117 172-311 174-292 (521)
57 2rhq_A Phenylalanyl-tRNA synth 97.8 0.00035 1.2E-08 68.3 14.8 125 178-322 56-187 (294)
58 1c0a_A Aspartyl tRNA synthetas 97.7 0.00013 4.6E-09 77.8 11.8 116 172-312 136-255 (585)
59 1l0w_A Aspartyl-tRNA synthetas 97.7 0.00017 5.8E-09 76.9 11.6 116 172-312 142-261 (580)
60 4ah6_A Aspartate--tRNA ligase, 97.7 0.00016 5.5E-09 77.3 11.0 113 172-309 146-262 (617)
61 3m4p_A Ehasnrs, asparaginyl-tR 97.7 8.9E-05 3E-09 76.8 8.7 116 172-310 154-269 (456)
62 4ex5_A Lysine--tRNA ligase; st 97.6 0.00018 6.1E-09 75.7 9.9 116 172-311 202-320 (529)
63 3pco_A Phenylalanyl-tRNA synth 97.5 0.00046 1.6E-08 68.3 10.6 187 179-404 111-306 (327)
64 2du7_A O-phosphoseryl-tRNA syn 97.2 0.0052 1.8E-07 64.5 14.8 129 230-372 193-323 (549)
65 2odr_B Phosphoseryl-tRNA synth 97.1 0.012 4E-07 62.5 16.3 130 230-372 200-330 (648)
66 2odr_A Phosphoseryl-tRNA synth 97.1 0.012 4.2E-07 62.4 16.3 130 230-372 200-330 (665)
67 2odr_D Phosphoseryl-tRNA synth 97.0 0.013 4.5E-07 62.3 16.3 130 230-372 200-330 (685)
68 2odr_C Phosphoseryl-tRNA synth 97.0 0.014 4.8E-07 62.3 15.9 130 230-372 200-330 (701)
69 3l4g_B Phenylalanyl-tRNA synth 96.2 0.035 1.2E-06 59.3 12.6 129 178-322 394-525 (589)
70 3cmq_A Phenylalanyl-tRNA synth 95.3 0.12 4E-06 52.7 12.0 191 174-403 51-286 (415)
71 2rhq_B Phenylalanyl-tRNA synth 94.3 0.18 6E-06 55.7 10.9 135 177-325 495-638 (795)
72 1b7y_B Phers, protein (phenyla 94.3 0.19 6.5E-06 55.3 11.0 129 177-326 491-627 (785)
73 3ica_A Phenylalanyl-tRNA synth 94.1 0.51 1.7E-05 43.3 12.0 143 178-325 7-160 (213)
74 3ig2_A Phenylalanyl-tRNA synth 94.1 0.29 9.9E-06 45.0 10.3 141 178-322 7-154 (213)
75 3hnw_A Uncharacterized protein 92.1 1.6 5.4E-05 37.5 11.1 64 40-103 68-135 (138)
76 3hnw_A Uncharacterized protein 83.7 9.6 0.00033 32.5 10.4 67 30-96 65-135 (138)
77 2zqm_A Prefoldin beta subunit 82.5 18 0.00061 29.2 12.2 76 31-106 11-112 (117)
78 3na7_A HP0958; flagellar bioge 81.6 8.8 0.0003 36.0 10.4 69 34-103 54-122 (256)
79 1fxk_A Prefoldin; archaeal pro 80.6 20 0.00067 28.5 12.2 74 31-104 6-98 (107)
80 4dzn_A Coiled-coil peptide CC- 80.4 2.9 9.7E-05 25.5 4.1 26 74-99 5-30 (33)
81 2wt7_B Transcription factor MA 76.2 7.9 0.00027 30.5 6.8 71 25-102 16-86 (90)
82 1l8d_A DNA double-strand break 75.1 30 0.001 27.7 10.8 25 78-102 71-95 (112)
83 1deq_A Fibrinogen (alpha chain 73.9 13 0.00043 36.9 9.0 69 33-101 88-157 (390)
84 3ghg_A Fibrinogen alpha chain; 72.8 8.3 0.00028 39.8 7.7 68 35-105 87-158 (562)
85 2yy0_A C-MYC-binding protein; 72.0 4.8 0.00017 28.5 4.2 33 70-102 18-50 (53)
86 4h22_A Leucine-rich repeat fli 70.9 37 0.0013 27.3 9.6 66 35-103 18-83 (103)
87 3qh9_A Liprin-beta-2; coiled-c 69.9 35 0.0012 26.2 9.2 60 32-101 18-77 (81)
88 2dfs_A Myosin-5A; myosin-V, in 69.7 15 0.00052 41.8 9.8 22 77-98 1022-1043(1080)
89 3na7_A HP0958; flagellar bioge 67.5 28 0.00096 32.5 9.8 31 77-107 52-82 (256)
90 1m1j_A Fibrinogen alpha subuni 65.6 35 0.0012 34.6 10.3 74 32-105 85-159 (491)
91 2lw1_A ABC transporter ATP-bin 64.1 29 0.00098 26.9 7.7 59 41-99 23-84 (89)
92 3oja_B Anopheles plasmodium-re 61.6 28 0.00097 36.1 9.6 40 73-112 546-585 (597)
93 3pco_B Phenylalanyl-tRNA synth 61.1 32 0.0011 37.7 10.1 131 181-324 495-635 (795)
94 3tnu_B Keratin, type II cytosk 60.8 71 0.0024 26.4 10.9 63 33-101 36-98 (129)
95 1ic2_A Tropomyosin alpha chain 60.3 54 0.0018 24.9 10.4 30 76-105 39-68 (81)
96 3mq9_A Bone marrow stromal ant 60.1 70 0.0024 32.1 12.0 20 85-104 443-462 (471)
97 2dfs_A Myosin-5A; myosin-V, in 59.6 45 0.0016 37.9 11.2 71 35-105 972-1043(1080)
98 1x79_B RAB GTPase binding effe 59.3 72 0.0025 26.0 9.8 62 33-100 6-67 (112)
99 3tnu_A Keratin, type I cytoske 58.7 68 0.0023 26.7 9.6 63 33-101 38-100 (131)
100 2ke4_A CDC42-interacting prote 57.8 70 0.0024 25.4 10.0 68 38-105 20-89 (98)
101 3oja_B Anopheles plasmodium-re 56.1 39 0.0013 35.0 9.5 27 76-102 556-582 (597)
102 3sjb_C Golgi to ER traffic pro 54.5 27 0.00092 27.6 5.8 64 38-108 21-86 (93)
103 1g6u_A Domain swapped dimer; d 54.1 44 0.0015 22.0 6.8 38 62-103 8-45 (48)
104 1grj_A GREA protein; transcrip 52.8 73 0.0025 27.4 9.1 62 41-104 10-72 (158)
105 12as_A Asparagine synthetase; 52.3 5.2 0.00018 38.9 1.7 83 339-424 232-326 (330)
106 3lay_A Zinc resistance-associa 52.2 1.2E+02 0.0042 26.6 12.0 71 33-107 71-142 (175)
107 2v71_A Nuclear distribution pr 52.2 94 0.0032 27.8 9.8 23 34-56 50-72 (189)
108 2p4v_A Transcription elongatio 52.2 40 0.0014 29.1 7.3 74 41-120 10-89 (158)
109 3a7p_A Autophagy protein 16; c 51.6 1.2E+02 0.004 26.1 11.6 55 47-101 68-126 (152)
110 2f23_A Anti-cleavage anti-GREA 51.4 76 0.0026 27.2 9.0 76 41-119 11-86 (156)
111 3u1c_A Tropomyosin alpha-1 cha 51.3 90 0.0031 24.8 11.2 52 16-67 5-57 (101)
112 3s4r_A Vimentin; alpha-helix, 50.5 89 0.003 24.5 11.9 35 19-55 11-45 (93)
113 1x79_B RAB GTPase binding effe 50.1 80 0.0027 25.8 8.2 19 82-100 42-60 (112)
114 3o0z_A RHO-associated protein 49.8 1.3E+02 0.0045 26.3 10.4 27 36-62 44-70 (168)
115 2wt7_B Transcription factor MA 49.8 91 0.0031 24.4 10.0 49 19-67 30-82 (90)
116 1fxk_C Protein (prefoldin); ar 48.2 1E+02 0.0035 25.3 9.1 30 76-105 93-122 (133)
117 3ra3_B P2F; coiled coil domain 47.7 22 0.00075 20.9 3.2 23 76-98 5-27 (28)
118 2l5g_A GPS2 protein, G protein 47.4 43 0.0015 21.7 4.8 29 80-108 10-38 (38)
119 3ilw_A DNA gyrase subunit A; D 47.2 36 0.0012 34.8 7.1 59 5-66 376-435 (470)
120 3ghg_A Fibrinogen alpha chain; 47.1 1.2E+02 0.0039 31.4 10.6 33 75-107 114-146 (562)
121 2jee_A YIIU; FTSZ, septum, coi 46.8 96 0.0033 23.8 10.4 54 45-108 25-78 (81)
122 1zhc_A Hypothetical protein HP 46.6 46 0.0016 25.1 6.0 23 47-69 17-39 (76)
123 4dzn_A Coiled-coil peptide CC- 46.6 43 0.0015 20.4 4.5 12 79-90 17-28 (33)
124 3tso_C RAB11 family-interactin 46.2 51 0.0017 24.9 5.9 44 71-114 14-61 (75)
125 1c1g_A Tropomyosin; contractIl 46.1 1.6E+02 0.0053 26.0 10.9 23 80-102 85-107 (284)
126 2zqm_A Prefoldin beta subunit 46.0 1E+02 0.0036 24.4 8.7 35 34-68 7-41 (117)
127 2jee_A YIIU; FTSZ, septum, coi 45.8 1E+02 0.0034 23.7 11.1 30 32-61 19-48 (81)
128 4fla_A Regulation of nuclear P 45.8 78 0.0027 27.2 8.1 25 87-111 126-150 (152)
129 1t3j_A Mitofusin 1; coiled coi 45.7 1.1E+02 0.0038 24.2 8.9 46 49-101 49-94 (96)
130 2eqb_B RAB guanine nucleotide 45.1 1.1E+02 0.0039 24.2 8.3 20 84-103 75-94 (97)
131 1lq7_A Alpha3W; three helix bu 45.1 77 0.0026 22.2 7.3 21 48-68 26-46 (67)
132 1c1g_A Tropomyosin; contractIl 44.5 1.7E+02 0.0056 25.9 11.0 27 77-103 89-115 (284)
133 3mq7_A Bone marrow stromal ant 44.5 1.3E+02 0.0044 24.6 9.5 37 74-110 74-110 (121)
134 1yzm_A FYVE-finger-containing 44.3 56 0.0019 22.8 5.5 20 51-70 6-25 (51)
135 2l5g_B Putative uncharacterize 44.3 60 0.0021 21.7 5.3 23 76-98 7-29 (42)
136 3u59_A Tropomyosin beta chain; 44.2 1.2E+02 0.004 24.0 11.7 52 16-67 5-57 (101)
137 3net_A Histidyl-tRNA synthetas 43.9 12 0.0004 38.3 2.9 34 392-433 346-380 (465)
138 2w83_C C-JUN-amino-terminal ki 43.7 1E+02 0.0035 23.3 7.2 25 38-62 28-52 (77)
139 1deq_A Fibrinogen (alpha chain 43.4 1.9E+02 0.0066 28.5 11.2 19 43-61 63-81 (390)
140 3d5a_X RF1, peptide chain rele 43.3 2.5E+02 0.0085 27.5 12.9 75 32-113 28-102 (354)
141 3he5_B Synzip2; heterodimeric 42.6 69 0.0024 21.3 5.5 16 80-95 33-48 (52)
142 3iv1_A Tumor susceptibility ge 42.5 1.1E+02 0.0038 23.3 9.4 11 45-55 16-26 (78)
143 1lq7_A Alpha3W; three helix bu 42.2 86 0.0029 21.9 6.5 32 71-102 25-65 (67)
144 1gqe_A Release factor 2, RF2; 41.9 1.6E+02 0.0054 29.0 10.6 13 118-130 120-132 (365)
145 3sja_C Golgi to ER traffic pro 41.3 19 0.00065 26.5 2.9 24 38-61 4-27 (65)
146 2v66_B Nuclear distribution pr 41.2 1.4E+02 0.0049 24.2 8.6 8 58-65 39-46 (111)
147 3oja_A Leucine-rich immune mol 40.8 1.5E+02 0.0051 29.8 10.7 29 76-104 447-475 (487)
148 2xcs_B DNA gyrase subunit B, D 40.7 38 0.0013 36.4 6.3 52 13-65 603-655 (692)
149 3bas_A Myosin heavy chain, str 40.3 1.3E+02 0.0043 23.3 10.5 35 33-67 14-48 (89)
150 1cxz_B Protein (PKN); protein- 40.0 91 0.0031 24.2 6.7 22 76-97 61-82 (86)
151 1l8d_A DNA double-strand break 40.0 1.4E+02 0.0047 23.6 9.6 28 75-102 75-102 (112)
152 3q8t_A Beclin-1; autophagy, AT 39.2 1.4E+02 0.0047 23.5 9.4 32 35-66 13-44 (96)
153 3uux_B Mitochondrial division 39.1 2E+02 0.0069 26.5 10.0 64 35-101 151-214 (242)
154 3okq_A BUD site selection prot 38.7 1.8E+02 0.0062 24.6 9.4 27 38-64 19-45 (141)
155 2no2_A HIP-I, huntingtin-inter 38.3 1.4E+02 0.0048 24.0 8.0 18 4-25 4-21 (107)
156 3bas_A Myosin heavy chain, str 37.9 1.4E+02 0.0047 23.0 10.0 59 33-101 28-86 (89)
157 3a7p_A Autophagy protein 16; c 37.3 2E+02 0.0068 24.7 11.7 69 33-104 68-136 (152)
158 3htk_A Structural maintenance 37.1 1.1E+02 0.0036 21.5 8.3 29 33-61 5-33 (60)
159 1htt_A Histidyl-tRNA synthetas 36.8 18 0.00061 36.2 2.9 34 392-433 303-336 (423)
160 3qne_A Seryl-tRNA synthetase, 36.8 74 0.0025 32.7 7.5 29 80-108 73-101 (485)
161 3etw_A Adhesin A; antiparallel 36.0 1.8E+02 0.0062 23.9 11.4 67 47-113 41-114 (119)
162 3v86_A De novo design helix; c 35.9 65 0.0022 18.7 4.0 14 76-89 12-25 (27)
163 2inr_A DNA topoisomerase 4 sub 35.9 37 0.0013 35.1 5.1 19 74-92 457-475 (514)
164 2lf0_A Uncharacterized protein 35.3 1.3E+02 0.0046 24.6 7.3 49 46-99 9-57 (123)
165 3plt_A Sphingolipid long chain 34.8 2.7E+02 0.0094 25.6 10.4 28 42-69 99-126 (234)
166 1cxz_B Protein (PKN); protein- 34.7 1.6E+02 0.0054 22.8 8.2 24 81-104 59-82 (86)
167 2fxo_A Myosin heavy chain, car 34.4 1.9E+02 0.0066 23.7 9.9 24 40-63 34-57 (129)
168 3r4h_A Coiled coil helix CC-TE 34.2 47 0.0016 20.3 3.3 24 75-98 6-29 (34)
169 1gmj_A ATPase inhibitor; coile 34.2 1.3E+02 0.0044 23.2 6.6 6 49-54 39-44 (84)
170 2ztg_A Alanyl-tRNA synthetase; 34.1 1.6E+02 0.0053 32.0 9.8 61 256-322 118-180 (739)
171 1z0j_B FYVE-finger-containing 34.1 76 0.0026 22.8 5.0 21 50-70 12-32 (59)
172 3oja_A Leucine-rich immune mol 34.0 1.8E+02 0.0061 29.2 10.0 59 46-107 427-485 (487)
173 3rf1_A Glycyl-tRNA synthetase 34.0 1.4E+02 0.0049 28.2 8.3 89 252-359 68-163 (311)
174 1fxk_A Prefoldin; archaeal pro 33.9 1.7E+02 0.0057 22.8 8.6 30 74-103 75-104 (107)
175 3lpx_A GYRA, DNA gyrase, A sub 33.0 1.2E+02 0.004 31.3 8.1 21 4-26 364-384 (500)
176 4dnd_A Syntaxin-10, SYN10; str 32.9 1.3E+02 0.0044 25.1 7.2 32 37-68 64-95 (130)
177 1lrz_A FEMA, factor essential 32.5 1.5E+02 0.0051 29.4 9.0 49 49-97 249-300 (426)
178 3he5_B Synzip2; heterodimeric 32.5 51 0.0018 22.0 3.6 39 59-100 8-46 (52)
179 4etp_A Kinesin-like protein KA 32.3 1.3E+02 0.0044 30.0 8.4 37 390-426 323-364 (403)
180 1m1j_B Fibrinogen beta chain; 32.0 3.2E+02 0.011 27.8 11.2 28 79-106 169-196 (464)
181 3q8t_A Beclin-1; autophagy, AT 31.9 1.8E+02 0.0063 22.7 10.2 32 30-61 22-53 (96)
182 1h4v_B Histidyl-tRNA synthetas 31.7 22 0.00075 35.4 2.6 34 392-433 304-337 (421)
183 1wle_A Seryl-tRNA synthetase; 31.5 2.7E+02 0.0092 28.6 10.8 81 15-101 69-153 (501)
184 1z0k_B FYVE-finger-containing 31.3 84 0.0029 23.3 5.0 20 51-70 24-43 (69)
185 1i84_S Smooth muscle myosin he 31.2 1.6E+02 0.0055 33.6 9.9 23 81-103 916-938 (1184)
186 3u06_A Protein claret segregat 30.9 1.5E+02 0.005 29.7 8.5 38 390-427 311-350 (412)
187 1zbt_A RF-1, peptide chain rel 30.9 97 0.0033 30.6 7.0 107 3-128 18-127 (371)
188 3cvf_A Homer-3, homer protein 30.8 1.8E+02 0.0061 22.2 7.9 29 38-66 25-53 (79)
189 2zxx_A Geminin; coiled-coil, c 30.4 1.6E+02 0.0053 22.5 6.5 10 76-85 63-72 (79)
190 2w83_C C-JUN-amino-terminal ki 30.4 1.8E+02 0.006 22.0 8.0 26 76-101 49-74 (77)
191 1hjb_A Ccaat/enhancer binding 30.2 1.6E+02 0.0055 22.8 6.8 33 74-110 46-78 (87)
192 4h22_A Leucine-rich repeat fli 30.0 1.6E+02 0.0053 23.6 6.7 35 34-68 3-37 (103)
193 4dk0_A Putative MACA; alpha-ha 29.7 3E+02 0.01 26.1 10.6 39 72-110 116-154 (369)
194 1ik9_A DNA repair protein XRCC 29.4 2.9E+02 0.01 24.9 9.6 41 33-73 132-172 (213)
195 1wt6_A Myotonin-protein kinase 29.4 1.7E+02 0.0059 22.3 6.6 17 87-103 54-70 (81)
196 3gwk_C SAG1039, putative uncha 29.2 1.8E+02 0.0063 21.9 11.2 59 47-105 22-82 (98)
197 4ioe_A Secreted protein ESXB; 29.0 1.8E+02 0.0061 21.6 9.0 61 45-105 21-83 (93)
198 1x4t_A Hypothetical protein LO 28.6 1E+02 0.0034 24.3 5.3 36 79-116 53-88 (92)
199 2fxo_A Myosin heavy chain, car 28.6 2.4E+02 0.0083 23.1 9.7 24 35-58 15-38 (129)
200 1ci6_A Transcription factor AT 28.5 95 0.0032 22.4 4.9 23 77-99 29-51 (63)
201 1lwu_C Fibrinogen gamma chain; 28.1 1.1E+02 0.0037 29.7 6.7 10 411-420 284-293 (323)
202 3vkg_A Dynein heavy chain, cyt 27.9 2.3E+02 0.0079 36.1 11.0 36 33-68 2014-2049(3245)
203 1go4_E MAD1 (mitotic arrest de 27.8 2.1E+02 0.0072 22.8 7.2 26 40-65 12-37 (100)
204 1j5w_A Glycyl-tRNA synthetase 27.7 1.5E+02 0.0052 27.9 7.2 87 254-359 58-151 (298)
205 2ocy_A RAB guanine nucleotide 27.4 2.2E+02 0.0075 24.5 7.8 19 87-105 81-99 (154)
206 2b9c_A Striated-muscle alpha t 27.3 2.8E+02 0.0097 23.4 10.4 79 18-101 39-117 (147)
207 3v1a_A Computational design, M 27.2 94 0.0032 21.4 4.3 20 51-70 5-24 (48)
208 1ses_A Seryl-tRNA synthetase; 27.2 2.1E+02 0.0072 28.6 9.0 31 78-108 64-94 (421)
209 3mq7_A Bone marrow stromal ant 27.1 2.6E+02 0.0088 22.9 10.1 30 78-107 71-100 (121)
210 3um3_B Charged multivesicular 27.1 2.4E+02 0.0082 22.5 8.4 20 47-66 13-32 (104)
211 1m1j_C Fibrinogen gamma chain; 26.6 1.7E+02 0.006 29.2 8.1 28 79-106 106-133 (409)
212 2zvf_A Alanyl-tRNA synthetase; 26.4 1.9E+02 0.0066 24.5 7.6 30 75-104 29-58 (171)
213 1jnm_A Proto-oncogene C-JUN; B 25.9 1.8E+02 0.0061 20.6 6.1 27 75-101 26-52 (62)
214 1x3z_A Peptide: N-glycanase; h 25.9 73 0.0025 31.1 5.0 51 306-364 185-235 (335)
215 1hjb_A Ccaat/enhancer binding 25.8 2.3E+02 0.0079 21.9 9.2 41 74-114 39-79 (87)
216 3u1c_A Tropomyosin alpha-1 cha 25.8 2.4E+02 0.0083 22.1 10.4 26 77-102 43-68 (101)
217 2dq0_A Seryl-tRNA synthetase; 25.3 1.3E+02 0.0046 30.4 7.1 62 47-108 31-99 (455)
218 2wt7_A Proto-oncogene protein 25.2 1.9E+02 0.0064 20.7 6.9 24 76-99 28-51 (63)
219 3cve_A Homer protein homolog 1 25.0 2.2E+02 0.0074 21.3 7.9 29 38-66 19-47 (72)
220 3mq9_A Bone marrow stromal ant 24.8 3E+02 0.01 27.3 9.8 27 78-104 443-469 (471)
221 2f4m_A Peptide N-glycanase; gl 24.2 1.1E+02 0.0036 29.4 5.7 46 309-362 147-192 (295)
222 1j1d_B Troponin T, TNT; THIN f 24.2 2.8E+02 0.0095 22.3 8.1 47 55-101 26-72 (106)
223 1jcd_A Major outer membrane li 24.2 1.9E+02 0.0063 20.2 8.0 20 83-102 30-49 (52)
224 2js5_A Uncharacterized protein 23.9 1.3E+02 0.0044 22.5 4.9 31 80-110 5-35 (71)
225 1cii_A Colicin IA; bacteriocin 23.9 4.7E+02 0.016 26.6 10.4 83 15-101 319-407 (602)
226 2nov_A DNA topoisomerase 4 sub 23.2 37 0.0013 35.0 2.5 18 48-65 431-448 (496)
227 3jsv_C NF-kappa-B essential mo 23.2 1.3E+02 0.0044 23.7 5.0 24 32-55 25-48 (94)
228 1i84_S Smooth muscle myosin he 23.0 3.3E+02 0.011 31.0 10.6 30 75-104 917-946 (1184)
229 2oqq_A Transcription factor HY 23.0 1.7E+02 0.0059 19.4 5.0 24 76-99 8-31 (42)
230 3viq_B Mating-type switching p 22.5 78 0.0027 24.5 3.6 30 72-101 2-31 (85)
231 3u59_A Tropomyosin beta chain; 22.4 2.8E+02 0.0096 21.7 10.4 27 77-103 43-69 (101)
232 4emc_A Monopolin complex subun 22.4 2E+02 0.0069 25.5 6.7 64 42-108 8-71 (190)
233 3isr_A Transglutaminase-like e 22.4 1.2E+02 0.0041 28.8 5.8 49 311-362 187-235 (293)
234 2v71_A Nuclear distribution pr 22.3 4.1E+02 0.014 23.5 10.8 11 82-92 106-116 (189)
235 1zvu_A Topoisomerase IV subuni 22.0 1.4E+02 0.0047 32.2 6.6 48 19-67 374-422 (716)
236 1ybz_A Chorismate mutase; cons 21.9 2.8E+02 0.0095 21.4 8.5 37 33-69 17-53 (91)
237 3q0x_A Centriole protein; cent 21.9 3.3E+02 0.011 24.9 8.4 50 3-65 154-203 (228)
238 4f54_A Uncharacterized protein 21.8 63 0.0022 29.0 3.5 28 175-202 56-86 (197)
239 1m1j_C Fibrinogen gamma chain; 21.6 6E+02 0.021 25.2 11.3 8 412-419 365-372 (409)
240 3ret_A Salicylate biosynthesis 21.6 2E+02 0.0068 22.4 6.1 38 33-70 8-45 (101)
241 3m91_A Proteasome-associated A 21.5 2.1E+02 0.0072 19.8 5.8 22 76-97 28-49 (51)
242 3lay_A Zinc resistance-associa 21.1 1.9E+02 0.0066 25.3 6.4 23 85-107 113-135 (175)
243 3m48_A General control protein 21.0 1.6E+02 0.0056 18.5 4.1 22 45-66 5-26 (33)
244 3ljm_A Coil Ser L9C; de novo d 21.0 1.4E+02 0.0049 17.8 4.2 16 82-97 12-27 (31)
245 3ku3_B Hemagglutinin HA2 chain 21.0 1.6E+02 0.0054 25.5 5.5 62 42-103 38-100 (174)
246 1gu4_A CAAT/enhancer binding p 20.6 2.8E+02 0.0095 20.9 7.3 21 76-96 48-68 (78)
247 1ci6_A Transcription factor AT 20.1 2.5E+02 0.0084 20.1 6.0 24 76-99 35-58 (63)
248 1nlw_A MAD protein, MAX dimeri 20.0 1.7E+02 0.0057 22.1 5.1 20 36-55 50-69 (80)
249 3vlc_E Golgi to ER traffic pro 20.0 24 0.00082 27.9 0.2 22 40-61 30-51 (94)
No 1
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=2.4e-121 Score=949.66 Aligned_cols=437 Identities=55% Similarity=0.917 Sum_probs=414.4
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT 80 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~ 80 (447)
||||++||++||.|||.|++++++|+.+.++||+|++||++||+++.++++|+++||++||+|+++|+++++.++|++++
T Consensus 1 Mldi~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~ 80 (485)
T 3qne_A 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEK 80 (485)
T ss_dssp CCCGGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCChHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 99999999888889999999999999887779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCC----------C-CCCCCCHHHHHHH
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKR----------T-EPKLKNHVELVEL 149 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~----------~-~~~~~~H~~l~~~ 149 (447)
++|+++|++|++++.++++++..+++.|||+|||+||+|.||++|++|++||+++ . +++++||++||++
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~g~~~~~~~~~~~~~~~~~~~~dH~elg~~ 160 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLR 160 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEECCTTCCSSSSBCTTTCCBCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEeCCCCccccccccccccCCCccCHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999987 2 6788999999999
Q ss_pred cCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCc
Q 043456 150 LGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDD 229 (447)
Q Consensus 150 ~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~ 229 (447)
+|||||+++++++|+|||||+|.|++|+++|++|+++.+.+.||++|++|.|++.++|++||||++|+++||++++.+++
T Consensus 161 l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~ 240 (485)
T 3qne_A 161 LDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDE 240 (485)
T ss_dssp TTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEE
T ss_pred cCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875568
Q ss_pred cccccCCChhHHHHhhccccC--CCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHH
Q 043456 230 KYLIATAEQPLCAYHIDDWIH--PSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEE 307 (447)
Q Consensus 230 ~~L~pTsE~~l~~l~~~~~~s--~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~ 307 (447)
+||+||+|+|+++||++++++ |++||++|+++|+|||+|+|++|++++||+|+|||+|+|+|+||+|++ |+++|++
T Consensus 241 ~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~--s~~e~e~ 318 (485)
T 3qne_A 241 KYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEK--SWEEFDR 318 (485)
T ss_dssp EEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGG--HHHHHHH
T ss_pred EEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHH--HHHHHHH
Confidence 999999999999999999998 999999999999999999999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEE
Q 043456 308 MIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYV 387 (447)
Q Consensus 308 ~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~ 387 (447)
|++.+++||+.||||||+|.+|++|+|++++++||||+|+|++++|+||+|||||+||||+|++|+|+++.+.++++.||
T Consensus 319 ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~v 398 (485)
T 3qne_A 319 MIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYV 398 (485)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CCCBC
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999753224677899
Q ss_pred EeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCc-eeecCCCCCCccc
Q 043456 388 HLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGK-TFLPFKAKPAPEA 440 (447)
Q Consensus 388 htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~-~~i~~~~~~~~~~ 440 (447)
||+||||+|++|+|+|||||||++|||+||++|+|||+|. .+||+. |++|..
T Consensus 399 htlNgt~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~-~~~~~~ 451 (485)
T 3qne_A 399 HCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYI-KELPKN 451 (485)
T ss_dssp EEEEEEEEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECC-CCCSSC
T ss_pred EEEecchhHHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeecc-ccCCcc
Confidence 9999999999999999999999999999999999999999 999998 888864
No 2
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=1.8e-120 Score=944.08 Aligned_cols=435 Identities=50% Similarity=0.871 Sum_probs=407.4
Q ss_pred CCchhhhhcccCCCH--HHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 043456 1 MLDINLFREEKGGIP--EKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL---------- 68 (447)
Q Consensus 1 MlDik~ir~~~~~n~--e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~---------- 68 (447)
||||++|| +|+ +.|++++++|+.+.++||+|++||++||+++.++++|+++||++||+|+++|+
T Consensus 7 mldi~~~r----~~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~ 82 (484)
T 3lss_A 7 VLDIQLFR----DETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSE 82 (484)
T ss_dssp CCCGGGGG----SHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred cccHHHHH----cCCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 89999999 995 99999999999877779999999999999999999999999999999999888
Q ss_pred --------------cCCChhHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCC-ceEE
Q 043456 69 --------------SGKDFSEM----VTK-TNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEAN-NAIV 128 (447)
Q Consensus 69 --------------~~~~~~~l----~~~-~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~-~~~i 128 (447)
++++.++| +++ +++|+++|+++++++.++++++..+++.|||+|||+||+|.||++ |+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~v 162 (484)
T 3lss_A 83 IPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVV 162 (484)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEE
T ss_pred ccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcccCcEEE
Confidence 55667788 999 999999999999999999999999999999999999999999998 9999
Q ss_pred EeecCCCCCCCCCCHHHHHHHcCCccccccc-cccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHH
Q 043456 129 RTWGEKRTEPKLKNHVELVELLGIADLKKGA-DIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVM 207 (447)
Q Consensus 129 ~~~g~~~~~~~~~~H~~l~~~~~l~d~~~~~-~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~ 207 (447)
++||+++. ++++||++||+++|||||++++ +++|+|||||+|.||+|+++|++|+++.+.++||++|.+|+|++.++|
T Consensus 163 ~~~g~~~~-~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~ 241 (484)
T 3lss_A 163 RTFGNTTK-RAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVM 241 (484)
T ss_dssp EEESCTTC-CCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHH
T ss_pred EecCCCCC-CCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHH
Confidence 99999885 8899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeee
Q 043456 208 AKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEK 287 (447)
Q Consensus 208 ~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k 287 (447)
++||||++|+++||++++.+++|||+||+|+|+++||+++++||++||+||+++|+|||+|+||+|++++||+|+|||+|
T Consensus 242 ~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~k 321 (484)
T 3lss_A 242 GEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDK 321 (484)
T ss_dssp HHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEE
T ss_pred HhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEE
Confidence 99999999999999998766789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhh
Q 043456 288 VEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQS 367 (447)
Q Consensus 288 ~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs 367 (447)
+|+|+||+|++++|+++|++|++++++||+.||||||+|.+|++|+|++++++||||+|+|++++|+||+|||||+||||
T Consensus 322 vE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~dyqA 401 (484)
T 3lss_A 322 IEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQS 401 (484)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHH
T ss_pred EEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchhheechheecCCCCCeeEEEEecCcccccc
Confidence 99999999976679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccEEeccC---CCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCCCCCCcccc
Q 043456 368 RRLEIRYGQKK---SNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAKPAPEAK 441 (447)
Q Consensus 368 ~rl~i~y~~~~---~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~~~~~~~~~ 441 (447)
+|++|+|++++ .++++++||||+||||+||+|+|+|||||||++|||+||++|+|||+|..+||+. |++|+..
T Consensus 402 rr~~iry~~~~~~~~~~~~~~~vhtlNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~-~~~~~~~ 477 (484)
T 3lss_A 402 QSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFE-NNAQAEG 477 (484)
T ss_dssp HHHTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECC-CC-----
T ss_pred cccceEEeccccccccCCCceeeeEEeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecC-ccCCccc
Confidence 99999998753 1245789999999999999999999999999999999999999999999999998 8999643
No 3
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=1.6e-118 Score=934.57 Aligned_cols=438 Identities=53% Similarity=0.880 Sum_probs=401.9
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh------h
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDF------S 74 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~------~ 74 (447)
||||++||++||.|||.|++++++|+.+.++||+|++||++||+++.++++|+++||++||+|+++|+++++. .
T Consensus 2 mld~~~~r~~~g~n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~ 81 (522)
T 3vbb_A 2 VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVP 81 (522)
T ss_dssp CCCGGGSCGGGTCCHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCC
T ss_pred CcCHHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhH
Confidence 8999999988888999999999999987767999999999999999999999999999999999998876532 1
Q ss_pred HH-------------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCC-CceEEEeecC
Q 043456 75 EM-------------------VTKTN-EIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEA-NNAIVRTWGE 133 (447)
Q Consensus 75 ~l-------------------~~~~~-~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~-~~~~i~~~g~ 133 (447)
++ +.+++ .|+++|+++++++.++++++..+++.|||+|||+||+|.||+ +|+++++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~dn~~vr~~g~ 161 (522)
T 3vbb_A 82 ENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGD 161 (522)
T ss_dssp GGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHHGGGSCCCCCTTSCCCSCHHHHCEEEEEESC
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcccCcEEEEEeCC
Confidence 11 11122 378899999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCc
Q 043456 134 KRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQL 213 (447)
Q Consensus 134 ~~~~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~ 213 (447)
++. ++++||++||+++|||||+++++++|+|||||+|.|++|+++|++|+++.+.+.||++|.+|.|++.++|++||||
T Consensus 162 ~~~-~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l 240 (522)
T 3vbb_A 162 CTV-RKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240 (522)
T ss_dssp SSC-CCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCC
T ss_pred CCC-CCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCc
Confidence 874 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCccEEEecC---------CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeee
Q 043456 214 AQFDEELYKVTGE---------GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQ 284 (447)
Q Consensus 214 ~~~~~~lf~i~~~---------~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~q 284 (447)
++|+++||++++. +++|||+||+|+|+++||+++++||++||+||+++|+|||+|+||+|++++||+|+||
T Consensus 241 ~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQ 320 (522)
T 3vbb_A 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQ 320 (522)
T ss_dssp C-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSE
T ss_pred ccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeee
Confidence 9999999999753 3589999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccch
Q 043456 285 FEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTD 364 (447)
Q Consensus 285 F~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D 364 (447)
|+|+|+|+||+|++++|+++|++|++.+++||+.||||||+|.+|++|+|++++++||||+|+|++++|+||+|||||+|
T Consensus 321 F~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~D 400 (522)
T 3vbb_A 321 FEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTD 400 (522)
T ss_dssp EEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTT
T ss_pred eEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCC
Confidence 99999999999976679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCc--eeecCCCCCCccc
Q 043456 365 YQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGK--TFLPFKAKPAPEA 440 (447)
Q Consensus 365 ~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~--~~i~~~~~~~~~~ 440 (447)
|||+|++|+|++.+..++++.||||+||||+|++|+|+|||||||+++||+||++|+|||+|. .+||+. |++|..
T Consensus 401 yqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~-~~~~~~ 477 (522)
T 3vbb_A 401 YQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFV-KPAPIE 477 (522)
T ss_dssp HHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECC-SCCCC-
T ss_pred CccceeeeEEccccccCCCeeeceEEeccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecC-CCCCcc
Confidence 999999999987522246788999999999999999999999999999999999999999854 899999 888853
No 4
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=5.1e-112 Score=888.04 Aligned_cols=425 Identities=29% Similarity=0.497 Sum_probs=402.8
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFAS--VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK------- 71 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~--~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~------- 71 (447)
||||++|| +|+|.|++++++|+.+ .++||+|+++|++||+++.++++|+++||++||+|++++++++
T Consensus 40 mlD~~~ir----~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~ 115 (501)
T 1wle_A 40 LLDMESLC----AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQD 115 (501)
T ss_dssp CCCHHHHH----HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGC
T ss_pred ccCHHHHH----hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Confidence 99999999 9999999999999975 4569999999999999999999999999999999999876642
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHH
Q 043456 72 -DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVEL 149 (447)
Q Consensus 72 -~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~ 149 (447)
+.++|++++++|+++|+++++++.++++++..+++.|||+|||+||+| +|++|++|++||+++. +++.+||++||++
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g-~e~~n~~v~~~g~~~~~~f~~~dH~~Lg~~ 194 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG-DESQARVLHVVGDKPAFSFQPRGHLEIAEK 194 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-CCCCCeEEEEeCCCCCCCCCCCCHHHHHhh
Confidence 556899999999999999999999999999999999999999999999 7788999999999876 7889999999999
Q ss_pred cCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcC-ccEEEecC-C
Q 043456 150 LGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDE-ELYKVTGE-G 227 (447)
Q Consensus 150 ~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~-~lf~i~~~-~ 227 (447)
+|+|||+++++++|+|+|||+|.|++|+++|++|+++.+.+.||++|++|.|++.++|++||||++|.+ +||+++++ +
T Consensus 195 lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~ 274 (501)
T 1wle_A 195 LDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRF 274 (501)
T ss_dssp HTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTS
T ss_pred cCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 99999865 4
Q ss_pred CccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCC--cchHHHHH
Q 043456 228 DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN--GNDSWDMH 305 (447)
Q Consensus 228 ~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e--~~~s~~~~ 305 (447)
++|||+||+|++++++|+++++||++||++|+++|+|||+|+| +|++++||+|+|||+|+|+|+||+|+ + |+++|
T Consensus 275 ~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~-~G~d~~GL~RvhqF~kvE~~~f~~pe~e~--s~~~~ 351 (501)
T 1wle_A 275 EDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLEQ--SSELL 351 (501)
T ss_dssp SSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHHH--HHHHH
T ss_pred CeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCC-CCCCCcCceeeeeeeeeeEEEEeCCcHHH--HHHHH
Confidence 6899999999999999999999999999999999999999999 99999999999999999999999995 6 99999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCcee
Q 043456 306 EEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQ 385 (447)
Q Consensus 306 ~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~ 385 (447)
++|++++++||+.||||||+|.+|++|+|++++++||+|+|+|++++|+|++|||||+||||+||+|+|+++ +++..
T Consensus 352 e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~~~---~gk~~ 428 (501)
T 1wle_A 352 EEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTE---AGELQ 428 (501)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECS---SSCEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEECC---CCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 36778
Q ss_pred EEEeecccccchhHHHHHHHHhcCCCCC-cccCCcccCcCCCceeecCCCCCCc
Q 043456 386 YVHLLNSTLTATERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFKAKPAP 438 (447)
Q Consensus 386 ~~htlngt~~ai~Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~~~~~~~ 438 (447)
+|||+||||+|++|+|+|||||||+++| |.||+||+||| |.++|++. |.+|
T Consensus 429 ~vHtlngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~-g~~~i~~~-~~~~ 480 (501)
T 1wle_A 429 FAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYL-GTDRITTP-THVP 480 (501)
T ss_dssp ECEEEEEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHH-SSSEECCC-SSCC
T ss_pred EEEEECCccchHHHHHHHHHHhCCCCCCCEeCChhhcCcc-CcccccCc-ccCc
Confidence 9999999999999999999999999999 99999999999 58899742 4455
No 5
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=4.1e-109 Score=860.89 Aligned_cols=423 Identities=44% Similarity=0.725 Sum_probs=409.4
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCC-C-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFA-S-VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVT 78 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~-~-~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~ 78 (447)
||||++|| +|||.|++++++||. + .++||+|+++|++||+++.++++|+++||++||+|+++++++++.++|++
T Consensus 1 mld~~~~r----~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~ 76 (455)
T 2dq0_A 1 MLDIKLIR----ENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLA 76 (455)
T ss_dssp CCCHHHHH----HCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHH
T ss_pred CCCHHHHH----hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 99999999 999999999999998 6 66799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-C--------------------
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-E-------------------- 137 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~-------------------- 137 (447)
++++|+++|+++++++.++++++..+++.|||+|||+||+|.||++|++|++||+++. +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (455)
T 2dq0_A 77 KSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILE 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcCCCCCccccchhhhccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999865 4
Q ss_pred CCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCc
Q 043456 138 PKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFD 217 (447)
Q Consensus 138 ~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~ 217 (447)
++++||++||+++|||||+++++++|+|+|+|+|.|++|+++|++|+++.+.+.||++|.+|.|++.++|++||||++|.
T Consensus 157 ~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 236 (455)
T 2dq0_A 157 WKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE 236 (455)
T ss_dssp SCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH
T ss_pred CccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCC
Q 043456 218 EELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN 297 (447)
Q Consensus 218 ~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e 297 (447)
++||++++ +++||+||+|++++.+|++.++||++||+|++++|+|||+|++++|++++||+|+|||+|+|+|+||+|+
T Consensus 237 ~emy~~~d--~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe 314 (455)
T 2dq0_A 237 DVIYKVED--EDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE 314 (455)
T ss_dssp HTCCBBTT--SSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT
T ss_pred HhhCeecC--CcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHH
Confidence 99999975 5899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEecc
Q 043456 298 GNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQK 377 (447)
Q Consensus 298 ~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~ 377 (447)
+ |+++++++++.+.+||+.|||||+++.+|++|+|++++++||+|+|+|+.++|.|++|||||+|||++||+|+|.++
T Consensus 315 ~--s~~~~~e~l~~~~~il~~LGL~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry~~~ 392 (455)
T 2dq0_A 315 E--SWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDR 392 (455)
T ss_dssp T--HHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESS
T ss_pred H--HHHHHHHHHHHHHHHHHHcCCceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEEecC
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCceeEEEeecccccchhHHHHHHHHhcCCCCC-cccCCcccCcCCCceeecCCC
Q 043456 378 KSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFKA 434 (447)
Q Consensus 378 ~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~~~ 434 (447)
. ++++.++||+||||+|++|+|+|||||||+++| |.||.||+||| |+.+|+++.
T Consensus 393 ~--~g~~~~vHtlngs~lav~R~i~allE~~~~~dG~i~iP~~LaP~~-g~~~i~~~~ 447 (455)
T 2dq0_A 393 T--DEKPRYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYT-GFKEIVPVE 447 (455)
T ss_dssp T--TSCCEECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHH-SCSEECCCC
T ss_pred C--CCcEEEEEEEechHhHHHHHHHHHHHHccCCCCcEeCChhhCCcc-cccccCccc
Confidence 1 356789999999999999999999999999999 99999999999 999998763
No 6
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=1.5e-108 Score=850.19 Aligned_cols=415 Identities=30% Similarity=0.542 Sum_probs=401.8
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT 80 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~ 80 (447)
||||++|| +|||.|++++++|+.+.+ ||+|+++|++||+++.++++|+++||++||+|++ +++++.++|++++
T Consensus 1 mld~~~~r----~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~--~~~~~~~~l~~~~ 73 (421)
T 1ses_A 1 MVDLKRLR----QEPEVFHRAIREKGVALD-LEALLALDREVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARG 73 (421)
T ss_dssp CCCHHHHH----HCHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--SCHHHHHHHHHHH
T ss_pred CCCHHHHH----hCHHHHHHHHHHhCCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHH
Confidence 99999999 999999999999998776 9999999999999999999999999999999987 5556778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCccccccc
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGA 159 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~ 159 (447)
++++++|+++++++.++++++..+++.|||+|||+||+| ||++|+++++||+++. +++++||++||+++|+|| ++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g-~e~~n~~~~~~g~~~~~~~~~~~H~~lg~~l~l~d-~~~~ 151 (421)
T 1ses_A 74 KALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRIS 151 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-CccccEEEEEeCCCCccCCCCCCHHHHHHHcCccc-cccc
Confidence 999999999999999999999999999999999999999 8999999999999876 788999999999999999 9999
Q ss_pred cccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChh
Q 043456 160 DIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQP 239 (447)
Q Consensus 160 ~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~ 239 (447)
+++|+|+|+|+|.|++|+++|++|+++.+.+.||++|.+|.|++.++|++||||++|.++||.+++ ++++|+||+|++
T Consensus 152 ~~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d--~~l~L~Pt~e~~ 229 (421)
T 1ses_A 152 QVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVV 229 (421)
T ss_dssp HHHCSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT--SSEEECSSTHHH
T ss_pred cccCCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC--CeEEEeecCcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999975 589999999999
Q ss_pred HHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC--CcchHHHHHHHHHHHHHHHHH
Q 043456 240 LCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP--NGNDSWDMHEEMIKNSEEFYQ 317 (447)
Q Consensus 240 l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~--e~~~s~~~~~~~~~~~~~i~~ 317 (447)
++++|+++++|+++||++++++|+|||+|+|++|++++||+|+|||+|+|+|+||.| ++ |+++|+++++.+.+||+
T Consensus 230 ~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~--s~~~~~e~~~~~~~il~ 307 (421)
T 1ses_A 230 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEA--SDRAFQELLENAEEILR 307 (421)
T ss_dssp HHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHH--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 67 99999999999999999
Q ss_pred HcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccch
Q 043456 318 MLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTAT 397 (447)
Q Consensus 318 ~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai 397 (447)
.|||||+++.++++|+|++++++||+|+|+|++++|.|++|||||+|||++|++|+|.+. +++++++||+||||+|+
T Consensus 308 ~LGL~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~---~~~~~~vhtlngs~lav 384 (421)
T 1ses_A 308 LLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRYAYTLNNTALAT 384 (421)
T ss_dssp HTTCCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEEEEEEEEEE
T ss_pred HCCCceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECC---CCCEEEEEecCCccchH
Confidence 999999999999999999999999999999999999999999999999999999999986 36789999999999999
Q ss_pred hHHHHHHHHhcCCCCC-cccCCcccCcCCCceeecC
Q 043456 398 ERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPF 432 (447)
Q Consensus 398 ~Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~ 432 (447)
+|+|+|||||||+++| |+||++|+||| |..+|++
T Consensus 385 ~R~l~allE~~~~~dG~i~iP~~L~Py~-g~~~i~~ 419 (421)
T 1ses_A 385 PRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEP 419 (421)
T ss_dssp THHHHHHHHHHBCTTSCEECCGGGHHHH-SSSEECC
T ss_pred HHHHHHHHHhCCCCCCCEecChhcCCcc-CccccCC
Confidence 9999999999999999 99999999999 9999975
No 7
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=9.2e-107 Score=838.42 Aligned_cols=421 Identities=43% Similarity=0.715 Sum_probs=407.9
Q ss_pred CCchhhhhcccCCCHHHHHHHHHhhCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHH
Q 043456 1 MLDINLFREEKGGIPEKIRESQRRRFAS-VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTK 79 (447)
Q Consensus 1 MlDik~ir~~~~~n~e~v~~~l~~R~~~-~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~ 79 (447)
|||+++|| +|||.|++++++||.+ .++||+|+++|++||+++.++++|+++||++||+|+++++++++.++++++
T Consensus 1 mld~~~~r----~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~ 76 (425)
T 2dq3_A 1 MIDINLIR----EKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNR 76 (425)
T ss_dssp CCCHHHHH----HCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTH
T ss_pred CCCHHHHH----hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHH
Confidence 99999999 9999999999999987 677999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCcccccc
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKG 158 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~ 158 (447)
+++++++|+++++++.++++++...++.|||+|||+||+|.+|++|+++++||+++. +++++||++||+++|+|||+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~~e~~n~~~~~~g~~~~~~f~~~~H~~l~~~l~l~d~~~~ 156 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRG 156 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCccCcEEEEEeCCCCCCCCCcccHHHHHhhCCeEEeccc
Confidence 999999999999999999999999999999999999999999999999999999876 7889999999999999999999
Q ss_pred ccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCCh
Q 043456 159 ADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQ 238 (447)
Q Consensus 159 ~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~ 238 (447)
++++|+|+|+|+|.|++++++|++|+++.+.+.||++|.+|.|++.++|++||||++|.++||++++ +++||+||+|+
T Consensus 157 ~~~~g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~~--~~l~LrPt~e~ 234 (425)
T 2dq3_A 157 AKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCER--DNLYLIPTAEV 234 (425)
T ss_dssp HHHHCSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTT--TCCEECSSTHH
T ss_pred ccccCCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEecC--CeEEEcCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 58999999999
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM 318 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~ 318 (447)
+++.+|++.++++++||+||+++|+|||+|++++|++++||+|+|||+|+|+|+||+|++ |+++++++++.+.++|+.
T Consensus 235 ~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~--s~~~~~e~i~~~~~il~~ 312 (425)
T 2dq3_A 235 PLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDT--SYDELEKLVKDAEEVLQL 312 (425)
T ss_dssp HHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred cCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchh
Q 043456 319 LKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATE 398 (447)
Q Consensus 319 Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~ 398 (447)
|||||+++.++++++|++++++||+|+|+|++++|+|++|||||+||||+||+|+|.+++ .++..++||+||||+|++
T Consensus 313 LGL~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~--~~k~~~vHtl~Gs~~av~ 390 (425)
T 2dq3_A 313 LGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSK--TGKNRFVHTLNGSGLAVG 390 (425)
T ss_dssp HTCCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTT--TCSEEECEEEEEEEEEHH
T ss_pred CCCceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCC--CCeeEEEEEEeccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999863 356779999999999999
Q ss_pred HHHHHHHHhcCCCCC-cccCCcccCcCCCceeecC
Q 043456 399 RTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPF 432 (447)
Q Consensus 399 Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~ 432 (447)
|+|+|||||||+++| |.||+||+|||| .++|+|
T Consensus 391 R~i~allE~~~~~~G~i~iP~~L~P~~~-~~~i~~ 424 (425)
T 2dq3_A 391 RTLAAILENYQQEDGSVVVPEVLRDYVG-TDVIRP 424 (425)
T ss_dssp HHHHHHHHHTBCTTSCEECCTTTHHHHS-CSEECC
T ss_pred HHHHHHHHhCCCCCCCEecCccccCccC-cccCCC
Confidence 999999999999999 999999999997 888873
No 8
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=2.8e-98 Score=791.41 Aligned_cols=348 Identities=32% Similarity=0.561 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEEEeecCCCC-CCCCCCHHHHHHHcCCcc
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRT-EPKLKNHVELVELLGIAD 154 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~-~~~~~~H~~l~~~~~l~d 154 (447)
++++++.+|++|+++++++.++++++.+.++.|||+|||+||+| ||++|+++++||+++. +++++||++||+++|+||
T Consensus 178 l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ipN~~~~~vp~g-~e~~n~~~~~~g~~~~~~~~~~dH~~lg~~l~l~d 256 (536)
T 3err_A 178 MLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVG-GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE 256 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCeEEEEeCCCCCCCCCCCCHHHHHHHcCCcc
Confidence 36778889999999999999999999999999999999999999 8999999999999987 788999999999999999
Q ss_pred ccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCcccccc
Q 043456 155 LKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIA 234 (447)
Q Consensus 155 ~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~p 234 (447)
+++++++|+|||||+|.|++|+++|++|+++++.+.||++|.+|.|++.++|++||||++|+++||++++ ++|||+|
T Consensus 257 -~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~--~~~~L~P 333 (536)
T 3err_A 257 -PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE--TDLYLTG 333 (536)
T ss_dssp -TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT--TTEEECS
T ss_pred -cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC--CCEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976 5899999
Q ss_pred CCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCC--cchHHHHHHHHHHHH
Q 043456 235 TAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN--GNDSWDMHEEMIKNS 312 (447)
Q Consensus 235 TsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e--~~~s~~~~~~~~~~~ 312 (447)
|+|++++++|+++++||++||+||+++|+|||+|+||+|++++||+|+|||+|+|+|+||+|+ + |+++|++|++.+
T Consensus 334 T~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~--s~~~~e~~~~~~ 411 (536)
T 3err_A 334 TAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEA--SDRAFQELLENA 411 (536)
T ss_dssp STHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHH--HHHHHHHHHHHH
T ss_pred CCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHH--HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 7 999999999999
Q ss_pred HHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecc
Q 043456 313 EEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNS 392 (447)
Q Consensus 313 ~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlng 392 (447)
++||+.||||||++.+|++|+|++++++||||+|+|++++|+||+|||||+||||+|++|+|+++ +++++|+||+||
T Consensus 412 ~~i~~~LgLpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~---~~k~~~vhtlng 488 (536)
T 3err_A 412 EEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDP---EGRVRYAYTLNN 488 (536)
T ss_dssp HHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEEEEE
T ss_pred HHHHHHcCCcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECC---CCCeEeeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999975 467899999999
Q ss_pred cccchhHHHHHHHHhcCCCCC-cccCCcccCcCCCceeecCC
Q 043456 393 TLTATERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 393 t~~ai~Rll~allE~~q~~~g-i~iP~~L~py~~g~~~i~~~ 433 (447)
||+|++|+|+|||||||++|| |+||++|+||| |.++|.|.
T Consensus 489 s~~a~~R~l~ailen~q~~dg~i~iP~~L~py~-g~~~~~~~ 529 (536)
T 3err_A 489 TALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEPG 529 (536)
T ss_dssp EEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-TSSEECCC
T ss_pred cchhHHHHHHHHHHhcCCCCCcEeCChhhCCcc-CCcccCCC
Confidence 999999999999999999999 99999999999 78899875
No 9
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=6e-62 Score=513.92 Aligned_cols=303 Identities=19% Similarity=0.249 Sum_probs=258.0
Q ss_pred HHhcCCCcCCCCCCCCCCCCceEEEeecCCCCCCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHH
Q 043456 105 LEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFG 184 (447)
Q Consensus 105 ~~~lPN~~h~~vP~g~~e~~~~~i~~~g~~~~~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~ 184 (447)
-+.|||+|||+||+|.||+ +.||+++.+|+ ++|++|++++|++|++++ .+|+|+|+|.|++++++|++++
T Consensus 12 ~~~~pn~~~~~vp~g~~~~-----~~~~~~~~~f~-~~~~~l~~~~glid~~~~----~~G~~~~~P~g~~l~~~i~~~~ 81 (501)
T 1nj1_A 12 SGLVPRGSHMQKPIKKDPN-----RYHGEKMTEFS-EWFHNILEEAEIIDQRYP----VKGMHVWMPHGFMIRKNTLKIL 81 (501)
T ss_dssp --------------------------------CHH-HHHHHHHHHTTCEECCCS----STTCCEECHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCcCCCCCCCC-----ccccCCCCCcc-HhHHHHHHHCCCccccCC----CCceEEECccHHHHHHHHHHHH
Confidence 4689999999999998765 89999876665 899999999999999653 4899999999999999999999
Q ss_pred HHHHHHCCCeEecCCccCcHHHHHH-hCCcCCCcCccEEEecC-----CCccccccCCChhHHHHhhccccCCCCcCeEe
Q 043456 185 LDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQFDEELYKVTGE-----GDDKYLIATAEQPLCAYHIDDWIHPSELPIRY 258 (447)
Q Consensus 185 ~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~~~~~lf~i~~~-----~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl 258 (447)
++.+.+ ||++|.+|.|++.++|.+ +||++.|.++||.++++ +++++|+||+|++++.+|++.+.||++||+|+
T Consensus 82 ~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~ 160 (501)
T 1nj1_A 82 RRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRF 160 (501)
T ss_dssp HHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEE
T ss_pred HHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEE
Confidence 999999 999999999999999998 99999999999999865 36899999999999999999999999999999
Q ss_pred eccccccccCccCCCCCCcCceeeeeee-eeeEEE-EecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcc
Q 043456 259 AGYSSCFRKEAGSHGRDTLGIFRVHQFE-KVEQFC-ITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDA 336 (447)
Q Consensus 259 ~~~s~~fR~E~~~~G~~~~GL~R~~qF~-k~e~~~-f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~ 336 (447)
|++++|||+|+. +++||+|+|||+ |+|+|+ +|++++ +++++++|++.+.++|+.|||||+++..+..+++.+
T Consensus 161 ~q~g~~fR~E~~----~~rGl~R~REF~~q~e~~~~~~~~e~--a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~ 234 (501)
T 1nj1_A 161 YQVVNTFRYETK----HTRPLIRVREITTFKEAHTIHATASE--AEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPG 234 (501)
T ss_dssp EEEEEEECCCCS----CCBTTTBCSEEEEEEEEEEEESSHHH--HHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTT
T ss_pred EeecCEeeCCCC----CCCCCceeEEEeeeeeEEEEECCHHH--HHHHHHHHHHHHHHHHHHCCCeEEEEeCCchhhcCC
Confidence 999999999984 478999999999 999986 677777 999999999999999999999999999999999999
Q ss_pred cccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCccc
Q 043456 337 AAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEV 416 (447)
Q Consensus 337 a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~i 416 (447)
+..+||||+|+|+ +.+.|++||++|+|++++|++++|.+. +++..++|+ +|+|++ +|+|+||+|+|++++|+.|
T Consensus 235 a~~~~die~~l~~-g~~~ei~t~~~lg~~~a~~~~~ry~~~---~g~~~~~h~-~g~Gig-eRli~aliE~~~d~~Gl~~ 308 (501)
T 1nj1_A 235 SEYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKFETP---EGDHEYVHQ-TCYGLS-DRVIASVIAIHGDESGLCL 308 (501)
T ss_dssp CSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHHTCEEECT---TSCEEECEE-EEEEEC-THHHHHHHHHTCCSSSEEC
T ss_pred cccceEEEEEcCC-CCEEEEEEEEeccccchhhcCeEEECC---CCCEEeeee-ccccHH-HHHHHHHHHHcCcccCccC
Confidence 9999999999998 788999999999999999999999975 366789998 899999 9999999999999999999
Q ss_pred CCcccCcCCCceeecC
Q 043456 417 PEVLQPFMGGKTFLPF 432 (447)
Q Consensus 417 P~~L~py~~g~~~i~~ 432 (447)
|.+|+||+ +.+||.
T Consensus 309 P~~laP~q--V~Iipi 322 (501)
T 1nj1_A 309 PPDVAAHQ--VVIVPI 322 (501)
T ss_dssp CTTTSSCS--EEEEEC
T ss_pred CccccCce--EEEEEe
Confidence 99999999 888998
No 10
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=100.00 E-value=1.2e-60 Score=472.90 Aligned_cols=246 Identities=15% Similarity=0.154 Sum_probs=224.9
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-----------------
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE----------------- 226 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~----------------- 226 (447)
+|||++.|.|++|+++|++|+++ +.+.||++|.+|.|++.++|++||||++|.++||.+..-
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~ 132 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAG 132 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccc
Confidence 89999999999999999999999 989999999999999999999999999999999997420
Q ss_pred --------CCccccccCCChhHHHHhhcc-ccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCC
Q 043456 227 --------GDDKYLIATAEQPLCAYHIDD-WIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN 297 (447)
Q Consensus 227 --------~~~~~L~pTsE~~l~~l~~~~-~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e 297 (447)
+.+|||+||+|+|++++|+++ +++ +.|++++++|+|||+|+ | +||+|||||+|+|+|+||+|+
T Consensus 133 ~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~Ea-S-----~GL~RvhqF~kvE~v~~~tpE 204 (346)
T 3mf2_A 133 GDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREP-S-----KHLDRLQSFRMREYVCIGTPD 204 (346)
T ss_dssp SCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCC-C-----SSTTSCSEEEEEEEEEEESHH
T ss_pred cccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcC-C-----CCCeeeeeeEEEEEEEEeCHH
Confidence 247999999999999999986 776 34999999999999998 3 489999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcc------------cccccceeeeecCCCceeeEEEecccchh
Q 043456 298 GNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDA------------AAKKLDLEAWFPASQTYRELVSCSNCTDY 365 (447)
Q Consensus 298 ~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~------------a~~~~diE~w~p~~~~~~ev~s~sn~~D~ 365 (447)
+ |+++++++++.++++|+.||||||++.+ +|+|++ +.++||+|+|+|++++|+||+|||||+||
T Consensus 205 q--s~~e~e~l~~~ae~il~~LgLpyrv~~~--~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~df 280 (346)
T 3mf2_A 205 D--VSDFRERWMVRAQAIARDLGLTFRVDYA--SDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREH 280 (346)
T ss_dssp H--HHHHHHHHHHHHHHHHHHTTCCCEEEEC--CCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTH
T ss_pred H--HHHHHHHHHHHHHHHHHHCCCCEEEEEc--cCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccch
Confidence 9 9999999999999999999999999866 788876 35799999999999999999999999999
Q ss_pred hhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeec
Q 043456 366 QSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLP 431 (447)
Q Consensus 366 qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~ 431 (447)
|++|++|||++ ..++||+ |+|+|++|+++|||||||++ -..||++|++|+++...+.
T Consensus 281 qarR~~Ir~~~-------~~~vHT~-~sglav~R~l~AiLen~G~d-~~~wP~~lr~~l~~~~~~~ 337 (346)
T 3mf2_A 281 FGTTWGIQDAN-------GEPAHTG-CVAFGMDRLAVAMFHTHGTD-LSAWPAKVRDILGLQPHVA 337 (346)
T ss_dssp HHHHHTCBCTT-------SSBCEEE-EEEEEHHHHHHHHHHHHCSC-GGGSCHHHHHHTTSCCC--
T ss_pred hhhhhcceeCC-------CCeEEEc-ccchHHHHHHHHHHHHcCCC-ccccCHHHHHHhCCCcccc
Confidence 99999999963 2599996 99999999999999999987 4699999999998765544
No 11
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3e-56 Score=468.73 Aligned_cols=285 Identities=14% Similarity=0.161 Sum_probs=257.9
Q ss_pred EeecCCCC-CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHH
Q 043456 129 RTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVM 207 (447)
Q Consensus 129 ~~~g~~~~-~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~ 207 (447)
.-|++++. +|.. ...+|+.++|++|+ + .+++|+|+|+|.|++++++|++|+++.+.+.||++|.+|.|++.++|
T Consensus 14 ~~~~~~~~~~f~~-wy~~l~~~aglid~-r---~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~ 88 (518)
T 3ial_A 14 TFSLTKTRDTFAD-WFDAIMDAAELVDR-R---YPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFL 88 (518)
T ss_dssp CCCCCCCTTTHHH-HHHHHHHHTTCEET-T---SSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHH
T ss_pred EEecCcccccccH-HHHHHHHHCCCccc-C---CCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHH
Confidence 35666664 4433 34499999999998 3 25799999999999999999999999999999999999999999999
Q ss_pred H-HhCCcCCCcCccEEEecC-----CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCcee
Q 043456 208 A-KCAQLAQFDEELYKVTGE-----GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFR 281 (447)
Q Consensus 208 ~-~~G~~~~~~~~lf~i~~~-----~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R 281 (447)
. .+|||+.|.++||.++++ +++++|+||+|++++.+|++.+.||++||+|++|+++|||+|+++ ++||+|
T Consensus 89 ~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~----~~GL~R 164 (518)
T 3ial_A 89 KKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKN----TKPLIR 164 (518)
T ss_dssp TSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCS----CBTTTB
T ss_pred HhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCC----CCCCce
Confidence 6 689999999999999864 368999999999999999999999999999999999999999863 589999
Q ss_pred eeeeeeeeEEEE-ecCCcchHHHHHHHHHHHHHHHH-HHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEe
Q 043456 282 VHQFEKVEQFCI-TSPNGNDSWDMHEEMIKNSEEFY-QMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSC 359 (447)
Q Consensus 282 ~~qF~k~e~~~f-~~~e~~~s~~~~~~~~~~~~~i~-~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~ 359 (447)
+|||+|+|+|+| |++++ +++++..|++.+.+|| +.|||||+++..+++|.++++.+++|||+|+|+ +++.|+++|
T Consensus 165 ~REF~q~e~h~f~~~~e~--a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~~iE~~~pd-gr~ie~gt~ 241 (518)
T 3ial_A 165 VREIHWNEAHCCHATAED--AVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTAGI 241 (518)
T ss_dssp CSEEEEEEEEEEESSHHH--HHHHHHHHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEEEE
T ss_pred eeEEEEeeEEEEECCHHH--HHHHHHHHHHHHHHHHHHhcCCcEEeeecChhhccCCCccceEEEEEcCC-CCEEEEece
Confidence 999999999999 67777 9999999999999999 999999999999999999999999999999998 788999999
Q ss_pred cccchhhhhhcccEEeccCCCCCceeEEEe-ecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 360 SNCTDYQSRRLEIRYGQKKSNEQTKQYVHL-LNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 360 sn~~D~qs~rl~i~y~~~~~~~~~~~~~ht-lngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+++++++|+||+|+|.++ +++.+++|+ .+|+ + +|+|+||||+|++++|+.||.||+||+ +.+||..
T Consensus 242 ~~Lg~~~s~rf~i~y~d~---~g~~~~~h~~~~G~--~-~R~iaaliE~~~de~Gl~lP~~LAP~q--V~IiPi~ 308 (518)
T 3ial_A 242 HNLGQRFSSTFDILYANK---ANESVHPYLTCAGI--S-TRVLACALSIHGDSGGLVLPPLIAPIH--VVIIPIG 308 (518)
T ss_dssp EEEETHHHHHTTCCEECT---TCCEECCEEEEEEE--E-THHHHHHHHHHCBTTBCCCCGGGCSCS--EEEEEES
T ss_pred ecccchhhhhcCcEEECC---CCCEeeeEEeccch--H-HHHHHHHHHHhCCCCccccCCccceEE--EEEEEee
Confidence 888777899999999986 467789995 4444 3 999999999999999999999999999 9999976
No 12
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=2.5e-55 Score=461.13 Aligned_cols=271 Identities=17% Similarity=0.172 Sum_probs=240.4
Q ss_pred CCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHH-HHHCCCeEecCCccCcHHHHHHhCCcCCCc
Q 043456 139 KLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF-LEKKSYTLLHTPFFMRKEVMAKCAQLAQFD 217 (447)
Q Consensus 139 ~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~-~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~ 217 (447)
...+..+++.+.|+|+. .+|+|+|+|+|.|++|.++|++|+++. +.+.||++|.+|.|++.++|++||||+.|.
T Consensus 201 f~~~~~~ll~raG~i~~-----~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~ 275 (522)
T 2cja_A 201 FKEDPTQAMMKEGWLKR-----GSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVY 275 (522)
T ss_dssp CCSCHHHHHHHTTSEEE-----CSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCG
T ss_pred cchHHHHHHHHCCCeee-----eCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccc
Confidence 34566799999999974 478999999999999999999999985 889999999999999999999999999999
Q ss_pred CccEEEe-----c--------------------------CCCccccccCCChhHHHHhhccccCCCCcCeEeec-ccccc
Q 043456 218 EELYKVT-----G--------------------------EGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAG-YSSCF 265 (447)
Q Consensus 218 ~~lf~i~-----~--------------------------~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~-~s~~f 265 (447)
++||.+. + .++++||+||+|++++.+|++.+.||++||++++| +|+||
T Consensus 276 demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~F 355 (522)
T 2cja_A 276 PEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSH 355 (522)
T ss_dssp GGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEE
T ss_pred cceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceE
Confidence 9999994 2 24689999999999999999999999999999999 99999
Q ss_pred ccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHH-HHHHHHHHHcCCcEEEEEecCCCCCc---------
Q 043456 266 RKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMI-KNSEEFYQMLKIPYQVVAIVSGALND--------- 335 (447)
Q Consensus 266 R~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~-~~~~~i~~~Lgl~yr~v~~~t~dlg~--------- 335 (447)
|+|. | .++||+|+|||+|+|+|+||+|++ +++++++++ ..+..+++.|||| ++ .+ ++|.++
T Consensus 356 R~Ep---g-s~~GL~R~REF~q~E~~~F~~pe~--s~ee~ee~i~~~~~~~l~~LGLp-~v-~~-~~D~f~~a~~G~~G~ 426 (522)
T 2cja_A 356 RYES---G-GIHGIERVDEFHRIEIVWIGTKEE--VLKCAEELHDRYMHIFNDILDIE-WR-KA-RVTPWFMAQEGLLGL 426 (522)
T ss_dssp CCCS---S-SCCCTTSCSEEEEEEEEEEEEHHH--HHHHHHHHHHHHHHHHHHTSCCC-EE-EE-EC-------------
T ss_pred eCCC---C-CCCCCeEeEEEEEeeEEEEeChHH--HHHHHHHHHHHHHHHHHHHcCCC-EE-ee-ccCCccccccccccc
Confidence 9994 3 479999999999999999999988 999999999 8889999999999 54 33 345433
Q ss_pred ---ccccccceeeeec---CCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcC
Q 043456 336 ---AAAKKLDLEAWFP---ASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQ 409 (447)
Q Consensus 336 ---~a~~~~diE~w~p---~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q 409 (447)
+++.+||+|+|+| +++.|.+++|||+|+|||++||+|+|.+ + .++|| +|+|+|++|+|+|||||||
T Consensus 427 ~q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~qarr~~Ir~~~-----~--~~vht-~~~Glgv~Rli~AlLE~~~ 498 (522)
T 2cja_A 427 AEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQS-----G--DELWS-GCSGVGLERWAAVFLAQKG 498 (522)
T ss_dssp ---CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEETT-----C--CCEEE-EEEEEEHHHHHHHHHHHHC
T ss_pred hhccccceEEEEEecccccCCCcEEEEeeechhhhhcccccceEcCC-----C--CEEEE-eccCcHHHHHHHHHHHHcC
Confidence 3678999999999 6899999999999999999999999863 2 38998 7999999999999999999
Q ss_pred CCCCcccCCcccCcCCCc-eeecC
Q 043456 410 KEDGVEVPEVLQPFMGGK-TFLPF 432 (447)
Q Consensus 410 ~~~gi~iP~~L~py~~g~-~~i~~ 432 (447)
+++| .||++|+|||+|. ++||+
T Consensus 499 ~~~~-~wP~~lr~ym~g~~~~~~~ 521 (522)
T 2cja_A 499 LDPA-NWPEEFRNRVGEMPKGIRF 521 (522)
T ss_dssp SCGG-GSCHHHHHHHCSCCCCCCC
T ss_pred CCCC-cCchHHHHhhCCCCccCCC
Confidence 9766 8999999999886 55553
No 13
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-54 Score=454.68 Aligned_cols=275 Identities=16% Similarity=0.134 Sum_probs=253.3
Q ss_pred HHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHH-hCCcCCCcCccE
Q 043456 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQFDEELY 221 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~~~~~lf 221 (447)
|.+|++++||+|+ .+++|+|+|+|.|++++++|++|+++.+.+.||++|.+|.|++.++|++ +|||++|.++||
T Consensus 35 y~~l~~~~~lid~-----~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy 109 (519)
T 4hvc_A 35 YSQVITKSEMIEY-----HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVA 109 (519)
T ss_dssp HHHHHHHTTCEEE-----CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCE
T ss_pred HHHHHHHCCCeEe-----cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccce
Confidence 6699999999998 2578999999999999999999999999999999999999999999996 899999999999
Q ss_pred EEecCC-----CccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE-Eec
Q 043456 222 KVTGEG-----DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITS 295 (447)
Q Consensus 222 ~i~~~~-----~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~-f~~ 295 (447)
.+++.+ ++|+|+||+|++++.+|++.+.||++||+|++++++|||+|++ .++||+|+|||+|+|+|+ ||+
T Consensus 110 ~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~----~~~Gl~R~ReF~q~e~h~~~~~ 185 (519)
T 4hvc_A 110 WVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK----HPQPFLRTREFLWQEGHSAFAT 185 (519)
T ss_dssp EEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCS----CCBTTTBCSEEEEEEEEEEESS
T ss_pred EEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCC----CCCCCcceeEEEEeeEEEEecC
Confidence 997542 3699999999999999999999999999999999999999985 358999999999999998 889
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHc-CCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEE
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQML-KIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRY 374 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~L-gl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y 374 (447)
+++ +++++..+++.+.++|+.| ||||+++..+..+.+.++..+||+|+|+|+.+++.++++|++|++++|+||+|+|
T Consensus 186 ~e~--a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y 263 (519)
T 4hvc_A 186 MEE--AAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVF 263 (519)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEE
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEE
Confidence 888 9999999999999999997 9999998877788888888999999999999999999999999999999999999
Q ss_pred eccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 375 GQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 375 ~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
.+++ .+++..++|+ ++.|++ +|+|++|+|+|++++|+.||.+|+||+ +.+||..
T Consensus 264 ~d~~-~~g~~~~vh~-~~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~q--V~Iipi~ 317 (519)
T 4hvc_A 264 EDPK-IPGEKQFAYQ-NSWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQ--VVIIPCG 317 (519)
T ss_dssp ECTT-STTCEEECEE-EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCS--EEEEECC
T ss_pred eccc-cCCCEEEEEE-ccccHH-HHHHHHHHHHhCccccccccccCCCeE--EEEEEec
Confidence 9863 2356789997 455655 999999999999999999999999999 8899986
No 14
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=1.1e-50 Score=439.82 Aligned_cols=290 Identities=18% Similarity=0.305 Sum_probs=248.1
Q ss_pred CCCCceEEEeecCCCC-------------CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHH
Q 043456 121 DEANNAIVRTWGEKRT-------------EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDF 187 (447)
Q Consensus 121 ~e~~~~~i~~~g~~~~-------------~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~ 187 (447)
|+++..+.|.||.... +++.+||++||+++++|+|++ .|+|+|+|+|.|+++.++|++|+++.
T Consensus 209 ~~~~~~l~r~~g~~~~~~~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~r~~ 284 (642)
T 1qf6_A 209 DSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSK 284 (642)
T ss_dssp CTTSCEEEEEEEEECSSHHHHHHHHHHHHHHHTTCHHHHHHHTTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCceeEeeeccccCchhHHhhhhhhhhccccCCHHHHHHhcCcccccc----CCCCcEEECCcHHHHHHHHHHHHHHH
Confidence 3456667799998621 357899999999999999986 48999999999999999999999999
Q ss_pred HHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeecccccccc
Q 043456 188 LEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRK 267 (447)
Q Consensus 188 ~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~ 267 (447)
+.+.||++|.||.|.+.++|++||||+.|.++||..+..+++++|+||+|++++.+|++.+.||++||+|+|++|+|||+
T Consensus 285 ~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~ 364 (642)
T 1qf6_A 285 LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRN 364 (642)
T ss_dssp HHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECC
T ss_pred HHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEec
Confidence 99999999999999999999999999999999999443467899999999999999999999999999999999999999
Q ss_pred CccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC-cEEEEEecCCCCCcccccccceeee
Q 043456 268 EAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI-PYQVVAIVSGALNDAAAKKLDLEAW 346 (447)
Q Consensus 268 E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl-~yr~v~~~t~dlg~~a~~~~diE~w 346 (447)
|.+ | +++||+|+|||+|+|+|+||++++ ++++++++++.+.++|+.||| +|++ .+++++ +.+..|.|+|
T Consensus 365 E~~--g-~~~GL~R~ReF~q~d~~~f~~~~~--~~~e~~~~i~~~~~i~~~lGl~~~~v-~l~~~~----e~~~g~~e~w 434 (642)
T 1qf6_A 365 EPS--G-SLHGLMRVRGFTQDDAHIFCTEEQ--IRDEVNGCIRLVYDMYSTFGFEKIVV-KLSTRP----EKRIGSDEMW 434 (642)
T ss_dssp CCG--G-GCBTTTBCSEEEEEEEEEEECGGG--HHHHHHHHHHHHHHHHGGGTCCCCEE-EEECCC----SSCCSCHHHH
T ss_pred CCC--c-cccCCceeeeEEEccEEEEcCHHH--HHHHHHHHHHHHHHHHHHcCCCceEE-EEecCc----ccccCCHHHH
Confidence 986 4 789999999999999999999988 999999999999999999999 7886 678775 4456677788
Q ss_pred ecCCCceeeEEEe------------------------------cccc----hhh-hhhcccEEeccCCCCCceeEEE-ee
Q 043456 347 FPASQTYRELVSC------------------------------SNCT----DYQ-SRRLEIRYGQKKSNEQTKQYVH-LL 390 (447)
Q Consensus 347 ~p~~~~~~ev~s~------------------------------sn~~----D~q-s~rl~i~y~~~~~~~~~~~~~h-tl 390 (447)
.++++.+.++.+| .+|+ ||| ++||+++|.+.+++...|.++| ++
T Consensus 435 ~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~df~l~~r~~~~y~~~~g~~~~P~~~hrai 514 (642)
T 1qf6_A 435 DRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAI 514 (642)
T ss_dssp HHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEEEeccCCccCCCEEEecCCCCcCcEEEEecc
Confidence 6544322221111 1344 898 9999999988754333566788 56
Q ss_pred cccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 391 NSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 391 ngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+|+ ++|+|++|+|+|++ .||.||+|++ +.+||..
T Consensus 515 ~G~---ieR~i~~liE~~~~----~~P~~laP~q--v~vipi~ 548 (642)
T 1qf6_A 515 LGS---MERFIGILTEEFAG----FFPTWLAPVQ--VVIMNIT 548 (642)
T ss_dssp EEE---HHHHHHHHHHHHTT----CCCTTTCSSC--EEEEESS
T ss_pred CCC---HHHHHHHHHHHhcC----CCCcccCCce--EEEEEeC
Confidence 663 99999999999987 8999999999 8899875
No 15
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=4.9e-49 Score=411.23 Aligned_cols=278 Identities=15% Similarity=0.264 Sum_probs=234.9
Q ss_pred CCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHH-HHCCCeEecCCccCcHHHHHHhCCcCC
Q 043456 137 EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFL-EKKSYTLLHTPFFMRKEVMAKCAQLAQ 215 (447)
Q Consensus 137 ~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~-~~~G~~~v~~P~l~~~~~~~~~G~~~~ 215 (447)
.++++||++||++++||+|+. +|+|+|+|+|.|++++++|++|+++.+ .+.||++|.+|.|++.++|++||||+.
T Consensus 31 ~~~~rdH~~lg~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~ 106 (460)
T 3uh0_A 31 ATPATMTSMVSQRQDLFMTDP----LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWEN 106 (460)
T ss_dssp CCHHHHHHHHHHHHTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTT
T ss_pred CCCCCCHHHHHHhCCCceecc----CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccc
Confidence 577899999999999999986 489999999999999999999999999 999999999999999999999999999
Q ss_pred CcCccEEEecC---CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE
Q 043456 216 FDEELYKVTGE---GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC 292 (447)
Q Consensus 216 ~~~~lf~i~~~---~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~ 292 (447)
|.++||.+.+. +++++|+||+|++++.+|++.+.||++||+|++++|+|||+|.++ .++||+|+|||+|+|+|+
T Consensus 107 ~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~---~~~GL~R~ReF~q~d~~~ 183 (460)
T 3uh0_A 107 YADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASG---ALSGLTRLRKFHQDDGHI 183 (460)
T ss_dssp SGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTT---TCBTTTBCSEEEEEEEEE
T ss_pred cccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCC---CCCCceeeeeEEEeeEEE
Confidence 99999999764 478999999999999999999999999999999999999999863 379999999999999999
Q ss_pred EecCCcchHHHHHHHHHHHHHHHH-HHcCCc---------EEEEEecCCC---CCcccc---------------------
Q 043456 293 ITSPNGNDSWDMHEEMIKNSEEFY-QMLKIP---------YQVVAIVSGA---LNDAAA--------------------- 338 (447)
Q Consensus 293 f~~~e~~~s~~~~~~~~~~~~~i~-~~Lgl~---------yr~v~~~t~d---lg~~a~--------------------- 338 (447)
||++++ ++++++++++.+.++| +.|||+ |++ .++|+. +|..+.
T Consensus 184 f~~~e~--~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~-~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~ 260 (460)
T 3uh0_A 184 FCTPSQ--VKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFI-NFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKL 260 (460)
T ss_dssp EECGGG--HHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEE-EEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred EcCHHH--HHHHHHHHHHHHHHHHHHHcCCCCcccccccceEE-EEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeE
Confidence 999988 9999999999999999 999998 554 467754 442211
Q ss_pred ---------cccceeeeecCCCceeeEEEecccchhh-hhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhc
Q 043456 339 ---------KKLDLEAWFPASQTYRELVSCSNCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENY 408 (447)
Q Consensus 339 ---------~~~diE~w~p~~~~~~ev~s~sn~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~ 408 (447)
.++|+.+. .+.++..+++++ +.||+ +.||++.|.+.+++...|.++|+ .+.| +++|+|++|+|+|
T Consensus 261 ~~g~gafygpkid~~~~-d~~gr~~q~~Ti--qld~~~~~rf~l~y~~~~g~~~~P~~ih~-~~~G-g~eRli~~Lie~~ 335 (460)
T 3uh0_A 261 NPGDGAFYGPKLDIMVT-DHLRKTHQVATI--QLDFQLPERFDLKFKDQDNSYKRPIMIHR-ATFG-SIERFMALLIDSN 335 (460)
T ss_dssp ETTCSCSSCCEEEEEEE-CTTSCEEEEEEE--EEESHHHHHTTCCEECTTSCEECCEEEEE-EEEE-EHHHHHHHHHHHH
T ss_pred CCCccccccceEEEEEE-ccCCCeeeeccc--ccccccccccceEEECCCCCccCcEEEec-Ccch-HHHHHHHHHHHHc
Confidence 12333332 233333344443 67885 89999999987644445668886 3556 8999999999998
Q ss_pred CCCCCcccCCcccCcCCCceeecCCCC
Q 043456 409 QKEDGVEVPEVLQPFMGGKTFLPFKAK 435 (447)
Q Consensus 409 q~~~gi~iP~~L~py~~g~~~i~~~~~ 435 (447)
.. .||.||+|++ +.+||...+
T Consensus 336 ~g----~~P~~laP~q--v~Vipi~~~ 356 (460)
T 3uh0_A 336 EG----RWPFWLNPYQ--AVIIPVNTK 356 (460)
T ss_dssp TT----CCCGGGCSCC--EEEEESSTT
T ss_pred CC----CCCCCCCCce--EEEEEecCC
Confidence 63 8999999999 899998743
No 16
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=1.2e-45 Score=386.06 Aligned_cols=275 Identities=18% Similarity=0.236 Sum_probs=249.8
Q ss_pred CCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHH-hCCcCCCcC
Q 043456 140 LKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQFDE 218 (447)
Q Consensus 140 ~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~~~~ 218 (447)
...|.+|+.++||++++.+ .+|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|.+ +||++.|.+
T Consensus 8 ~~~~~~l~~~~~li~~~~~----~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~ 83 (459)
T 1nj8_A 8 SEWYSDILEKAEIYDVRYP----IKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFED 83 (459)
T ss_dssp HHHHHHHHHHTSSCBCCST----TSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGG
T ss_pred cHhHHHHHHhCCCccccCC----CCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccch
Confidence 4679999999999999543 47999999999999999999999999999999999999999999985 999999999
Q ss_pred ccEEEecC-----CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeee-eeeEEE
Q 043456 219 ELYKVTGE-----GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFE-KVEQFC 292 (447)
Q Consensus 219 ~lf~i~~~-----~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~-k~e~~~ 292 (447)
+||.++++ +++++|+||+|.+++.+|++.+.||++||+|+|++++|||+|.. | ++||+|+|||+ |.|+|+
T Consensus 84 emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~--~--~rGl~R~REF~qq~d~~~ 159 (459)
T 1nj8_A 84 EVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK--H--TRPLIRLREIMTFKEAHT 159 (459)
T ss_dssp GCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS--C--CBTTTBCSBCSCEEEEEE
T ss_pred hhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccC--C--CCCceEeeeeeccCcEEE
Confidence 99999875 46899999999999999999999999999999999999999974 2 67999999999 999998
Q ss_pred E-ecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcc
Q 043456 293 I-TSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLE 371 (447)
Q Consensus 293 f-~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~ 371 (447)
| |++++ +++++.++++.+.++|+.|||||++...+..+...++..++|||+|+|. +...++++++++++.+|++++
T Consensus 160 ~~~~~~~--a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~~~~ie~~~~d-g~~~e~gt~~~lg~~~s~~~~ 236 (459)
T 1nj8_A 160 AHSTKEE--AENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPD-GRTMQIATVHNLGQNFSKTFE 236 (459)
T ss_dssp EESSHHH--HHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECTT-SCEEEEEEEEEEETHHHHHTT
T ss_pred EECCHHH--HHHHHHHHHHHHHHHHHHCCCceEEeecCchhhcCCcccceeEEEEcCC-CcEEEEEEEeecccccccccC
Confidence 5 55666 9999999999999999999999998888777887788889999999997 556799999989888899999
Q ss_pred cEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecC
Q 043456 372 IRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPF 432 (447)
Q Consensus 372 i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~ 432 (447)
++|.+. +|+..++|+ +|+|++ +|+|++|+|+|++++|+.||.+|+|++ +.+||.
T Consensus 237 ~~Y~~~---~G~~~~v~~-~~~Gig-eRli~alie~~~d~~gl~~P~~laP~q--v~Iipi 290 (459)
T 1nj8_A 237 IIFETP---TGDKDYAYQ-TCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQ--VVIVPL 290 (459)
T ss_dssp CEEECT---TSSEEECEE-EEEEEC-THHHHHHHHHHCBTTBCCCCTTSCSSS--EEEEEC
T ss_pred eEEECC---CCCEeeeeE-eeccHH-HHHHHHHHHHhCCCceeEcCCcCCCCc--EEEEec
Confidence 999875 356678897 688888 999999999999999999999999999 888998
No 17
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=1.1e-45 Score=380.59 Aligned_cols=270 Identities=18% Similarity=0.306 Sum_probs=226.3
Q ss_pred CCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCcc
Q 043456 141 KNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEEL 220 (447)
Q Consensus 141 ~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~l 220 (447)
+||++||+++|||+++. +++|+|.|+|.|+++.++|++++++.+.+.||++|.||.|.+.++|++||||+.|.++|
T Consensus 1 ~dh~~l~~~~~l~~~~~----~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em 76 (401)
T 1evl_A 1 RDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAM 76 (401)
T ss_dssp CCHHHHHHHTTCEECCT----TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGC
T ss_pred CChHHHHHhCCceEecC----CCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhh
Confidence 69999999999999976 47999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcch
Q 043456 221 YKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGND 300 (447)
Q Consensus 221 f~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~ 300 (447)
|.++..+++++|+||+|.+++.+|++.+.||++||+|+|++++|||+|.+ | +++||+|+|||+|.|+|+||.+++
T Consensus 77 ~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~--~-p~~Gl~R~reF~q~d~~~f~~~~~-- 151 (401)
T 1evl_A 77 FTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS--G-SLHGLMRVRGFTQDDAHIFCTEEQ-- 151 (401)
T ss_dssp CEEEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG--G-GCBTTTBCSEEEEEEEEEEECGGG--
T ss_pred EeEecCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC--c-ccccccccCcEEecceEEeCCHHH--
Confidence 99544467899999999999999999999999999999999999999986 3 678999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-cEEEEEecCCCCCcccccccceeeeecCCCcee------------------------e
Q 043456 301 SWDMHEEMIKNSEEFYQMLKI-PYQVVAIVSGALNDAAAKKLDLEAWFPASQTYR------------------------E 355 (447)
Q Consensus 301 s~~~~~~~~~~~~~i~~~Lgl-~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~------------------------e 355 (447)
++.+|+++++.+.++|+.||| +|++ .+++++ +.+..|.++|.++.+.+. +
T Consensus 152 ~~~e~~e~i~~~~~~~~~lgl~~~~~-~~~~~~----~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d 226 (401)
T 1evl_A 152 IRDEVNGCIRLVYDMYSTFGFEKIVV-KLSTRP----EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIE 226 (401)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSCCEE-EEECCC----SSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEE-EEecCC----cccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcC
Confidence 999999999999999999999 7886 566664 334445555543321110 1
Q ss_pred --E-------EEec-ccchhh-hhhcccEEeccCCCCCceeEEE-eecccccchhHHHHHHHHhcCCCCCcccCCcccCc
Q 043456 356 --L-------VSCS-NCTDYQ-SRRLEIRYGQKKSNEQTKQYVH-LLNSTLTATERTICCILENYQKEDGVEVPEVLQPF 423 (447)
Q Consensus 356 --v-------~s~s-n~~D~q-s~rl~i~y~~~~~~~~~~~~~h-tlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py 423 (447)
+ ..|. .+.||+ ++|++++|.+.+++...|.++| +++| +++|++++|+|+|++ .||.+++|+
T Consensus 227 ~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~G---gieRli~~l~e~~~~----~~p~~~ap~ 299 (401)
T 1evl_A 227 FTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILG---SMERFIGILTEEFAG----FFPTWLAPV 299 (401)
T ss_dssp EEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHHHHHTT----CCCTTTCSS
T ss_pred eEEEecCCCeEEeeeeeeccccccccCCEEECCCCCCcCcEEEEecCCC---cHHHHHHHHHHHhCC----cCCCCCCCe
Confidence 0 0121 234898 9999999987642222344567 4544 499999999999986 799999999
Q ss_pred CCCceeecCC
Q 043456 424 MGGKTFLPFK 433 (447)
Q Consensus 424 ~~g~~~i~~~ 433 (447)
+ +-++|..
T Consensus 300 ~--v~vi~~~ 307 (401)
T 1evl_A 300 Q--VVIMNIT 307 (401)
T ss_dssp C--EEEEESS
T ss_pred E--EEEEecC
Confidence 8 8888876
No 18
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=3e-44 Score=376.85 Aligned_cols=274 Identities=15% Similarity=0.138 Sum_probs=236.9
Q ss_pred CCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHH-hCCcCCCcC
Q 043456 140 LKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQFDE 218 (447)
Q Consensus 140 ~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~~~~ 218 (447)
...|.+|+.+.|++++. +.+|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|.+ +||++.|.+
T Consensus 15 ~~~~~~l~~~~~li~~~-----~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~ 89 (477)
T 1hc7_A 15 SEWYLEVIQKAELADYG-----PVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSP 89 (477)
T ss_dssp HHHHHHHHHHTTSEEEC-----SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCT
T ss_pred hHHHHHHHHHCCCeeec-----CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCccccccc
Confidence 35799999999999985 358999999999999999999999999999999999999999999988 999999999
Q ss_pred ccEEEecC-----CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE-
Q 043456 219 ELYKVTGE-----GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC- 292 (447)
Q Consensus 219 ~lf~i~~~-----~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~- 292 (447)
+||.++++ +++++|+||+|.+++.+|++.+.||++||+|+||+++|||+|.+ ++||+|+|||+|.|+|+
T Consensus 90 emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-----~rGl~R~REF~q~d~~~~ 164 (477)
T 1hc7_A 90 ELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-----TRPFLRTSEFLWQEGHTA 164 (477)
T ss_dssp TCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-----CBTTTBCSEEEEEEEEEE
T ss_pred ceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC-----CCCcceeEEEEEccEEEE
Confidence 99999865 36899999999999999999999999999999999999999975 45999999999999999
Q ss_pred EecCCcchHHHHHHHHHHHHHHHH-HHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcc
Q 043456 293 ITSPNGNDSWDMHEEMIKNSEEFY-QMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLE 371 (447)
Q Consensus 293 f~~~e~~~s~~~~~~~~~~~~~i~-~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~ 371 (447)
+|++++ +++++..|++.+.++| +.|||||++...+..+...++..++++|+|+|.. +..+++++.+++...|++++
T Consensus 165 ~~~~~~--ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~~ie~~~~dg-r~~~~gt~~~lg~~~s~~~g 241 (477)
T 1hc7_A 165 HATREE--AEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDG-KALQAGTSHYLGENFARAFD 241 (477)
T ss_dssp ESSHHH--HHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTTS-CEEEEEEEEEEETHHHHHTT
T ss_pred eCCHHH--HHHHHHHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccceEEEEEcCCC-cEEEEeeeEEcccccccccC
Confidence 566667 9999999999999999 8999999887766666666666789999999974 44578887766555699999
Q ss_pred cEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 372 IRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 372 i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
++|.+. +|+..++|+ .|.|++ +|+|++|+|+|++++|+.||.+|+|++ +.+||..
T Consensus 242 ~~y~~~---~G~~~~~~~-~~~Gig-eRli~~lie~~~d~~gl~~P~~laP~q--V~Iipi~ 296 (477)
T 1hc7_A 242 IKFQDR---DLQVKYVHT-TSWGLS-WRFIGAIIMTHGDDRGLVLPPRLAPIQ--VVIVPIY 296 (477)
T ss_dssp CEEECT---TSCEEECEE-EEEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCS--EEEEECC
T ss_pred eEEECC---CCCEEeeeE-eeccHH-HHHHHHHHHHhCccccccCCcccCCce--EEEEEcC
Confidence 999875 456678886 577877 999999999999999999999999999 8899986
No 19
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=3.2e-45 Score=398.00 Aligned_cols=279 Identities=15% Similarity=0.220 Sum_probs=235.7
Q ss_pred CCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCc
Q 043456 138 PKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFD 217 (447)
Q Consensus 138 ~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~ 217 (447)
++.+||++||+++|+|+|+. .+|+|+|.|+|.|+++.++|++++++.+.+.||++|.||.|.+.++|+++|||+.|.
T Consensus 238 a~~rdhr~lg~~l~l~~~~~---~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~ 314 (645)
T 1nyr_A 238 RKERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQ 314 (645)
T ss_dssp HHHTCHHHHHHHTTCEEEET---TTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCT
T ss_pred hhhhhHHHHhhhcceEEecc---cCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccc
Confidence 57899999999999999987 458999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecC-C-CccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEec
Q 043456 218 EELYKVTGE-G-DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 (447)
Q Consensus 218 ~~lf~i~~~-~-~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~ 295 (447)
++||.+.+. + ++++|+||+|++++.+|++...||++||+|+|++|+|||+|.+ | .++||+|+|||+|.|+|+||.
T Consensus 315 ~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~--~-~~~GL~R~ReF~Q~d~~~f~~ 391 (645)
T 1nyr_A 315 EDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS--G-AVSGLQRVRGMTLNDSHIFVR 391 (645)
T ss_dssp TSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT--T-TCBTTTBCSEEEEEEEEEEEC
T ss_pred cCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCC--c-cccCcceeeeEEEccEEEEcC
Confidence 999997543 5 7899999999999999999999999999999999999999986 4 679999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCC-cEEEEEecCCCCCcccccccceeeeecCC--------------------Cc--
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQMLKI-PYQVVAIVSGALNDAAAKKLDLEAWFPAS--------------------QT-- 352 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~Lgl-~yr~v~~~t~dlg~~a~~~~diE~w~p~~--------------------~~-- 352 (447)
+++ +.++|.+++..+.++|+.||| +|++ .+++.+++......++.|+|.++. +.
T Consensus 392 ~~~--~~d~~~e~i~~~~~~l~~lGl~~~~~-~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y 468 (645)
T 1nyr_A 392 PDQ--IKEEFKRVVNMIIDVYKDFGFEDYSF-RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFY 468 (645)
T ss_dssp GGG--HHHHHHHHHHHHHHHHHHTTCCCEEE-EEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTT
T ss_pred HHH--HHHHHHHHHHHHHHHHHHcCCCeEEE-EEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCcee
Confidence 988 999999999999999999999 6886 677776554444455666664321 10
Q ss_pred -----------eeeEEEec-ccchhh-hhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCCcccCCc
Q 043456 353 -----------YRELVSCS-NCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEV 419 (447)
Q Consensus 353 -----------~~ev~s~s-n~~D~q-s~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~gi~iP~~ 419 (447)
.+....|+ .+.||+ ++||++.|.+.+++...|.++|. |.+++++|++++|+|+|++ .||.|
T Consensus 469 gpki~~~~~d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~~ih~--~~~GgieR~i~~liE~~~~----~~P~~ 542 (645)
T 1nyr_A 469 GPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKG----AFPTW 542 (645)
T ss_dssp BCEEEEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEE--EEEEEHHHHHHHHHHHHTT----CCCTT
T ss_pred CCccceehhhhhCchhhcceEEeecccccccceEEECCCCCccCcEEEEe--ccCCcHHHHHHHHHHHhcC----CCCCC
Confidence 01112232 234776 99999999987533334566674 3444699999999999987 89999
Q ss_pred ccCcCCCceeecCC
Q 043456 420 LQPFMGGKTFLPFK 433 (447)
Q Consensus 420 L~py~~g~~~i~~~ 433 (447)
|+|++ +.+||..
T Consensus 543 lap~q--v~vip~~ 554 (645)
T 1nyr_A 543 LAPKQ--VQIIPVN 554 (645)
T ss_dssp TCSSC--EEEEESS
T ss_pred CCCce--EEEEEcc
Confidence 99998 8888875
No 20
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=1.9e-42 Score=371.59 Aligned_cols=194 Identities=14% Similarity=0.190 Sum_probs=176.8
Q ss_pred cCCCCCCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC
Q 043456 132 GEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA 211 (447)
Q Consensus 132 g~~~~~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G 211 (447)
.+.|.+++.++|+.|++. |+++. +++|+|.|+|.|+++.++|++++++.+.+.||++|.||.|.+.++|+.+|
T Consensus 12 ~~~~~~~~~~~h~~l~~~-g~~~~------~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG 84 (572)
T 2j3l_A 12 REVPNDAEVLSHQILLRA-GYIRQ------VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESG 84 (572)
T ss_dssp SSCCTTCCSHHHHHHHHT-TSEEE------EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHS
T ss_pred ccCCcccCCcCHHHHHhC-CCccc------cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcC
Confidence 334446788999999875 88763 47999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeE
Q 043456 212 QLAQFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQ 290 (447)
Q Consensus 212 ~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~ 290 (447)
||+.|.++||.+.+. +++++|+||+|++++.+|++.+.||++||+|+|++++|||+|.+ | .+||+|+|||+|+|+
T Consensus 85 ~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~--~--~~Gl~R~ReF~q~d~ 160 (572)
T 2j3l_A 85 RYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR--S--RSGLLRGREFIMKDG 160 (572)
T ss_dssp HHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS--C--CTGGGSCSEEEEEEE
T ss_pred CccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC--c--ccCccccceeEEeee
Confidence 999999999999775 57899999999999999999999999999999999999999985 3 689999999999999
Q ss_pred EEEecC-CcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccc
Q 043456 291 FCITSP-NGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAA 338 (447)
Q Consensus 291 ~~f~~~-e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~ 338 (447)
|+||.+ ++ +++++..+++.+.++|+.|||+|+++..+++++|+..+
T Consensus 161 ~~f~~~~~~--~~~e~~~~~~~~~~~~~~lgl~~~~~~~~~g~~g~~~s 207 (572)
T 2j3l_A 161 YSFHADEAS--LDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDS 207 (572)
T ss_dssp EEEESSHHH--HHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGTCSSE
T ss_pred EEEcCCHHH--HHHHHHHHHHHHHHHHHHcCCcEEEEecccccCCCccc
Confidence 999995 55 99999999999999999999999999888887776543
No 21
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=8.5e-43 Score=368.18 Aligned_cols=280 Identities=16% Similarity=0.160 Sum_probs=234.5
Q ss_pred CCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHH--HCCCeEecCCccCcHHHHHHhCCcCCCcC
Q 043456 141 KNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLE--KKSYTLLHTPFFMRKEVMAKCAQLAQFDE 218 (447)
Q Consensus 141 ~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~--~~G~~~v~~P~l~~~~~~~~~G~~~~~~~ 218 (447)
-.|.+|+++.|+|......--..+|+|.|+|.|+++.++|++++++.+. +.||++|.+|.|.+.++|++||||++|.+
T Consensus 6 ~~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d 85 (505)
T 1ati_A 6 DELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFAD 85 (505)
T ss_dssp HHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEE
T ss_pred HHHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCc
Confidence 3588999999998764321112389999999999999999999999998 89999999999999999999999999999
Q ss_pred ccEEEe-------------c-----------------------------------------------C------------
Q 043456 219 ELYKVT-------------G-----------------------------------------------E------------ 226 (447)
Q Consensus 219 ~lf~i~-------------~-----------------------------------------------~------------ 226 (447)
.||.+. + .
T Consensus 86 ~m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~f 165 (505)
T 1ati_A 86 PMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYF 165 (505)
T ss_dssp EEEEC--------------------------------------------------------------------CCCCEEE
T ss_pred cceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchh
Confidence 998731 0 0
Q ss_pred --------------CCccccccCCChhHHHHhhccccCC-CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE
Q 043456 227 --------------GDDKYLIATAEQPLCAYHIDDWIHP-SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF 291 (447)
Q Consensus 227 --------------~~~~~L~pTsE~~l~~l~~~~~~s~-~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~ 291 (447)
+..++|+|+++.+++..|++.+.|| ++||+++||+|+|||+|++ +.+||+|+|||+|+|+|
T Consensus 166 nlmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~----pr~GL~R~REF~q~d~~ 241 (505)
T 1ati_A 166 NMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT----PRNFIFRVREFEQMEIE 241 (505)
T ss_dssp ECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS----CCTGGGSCSEEEEEEEE
T ss_pred hhhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCC----CCCCCCcccceEEeeEE
Confidence 1234677777777877778888899 9999999999999999986 45799999999999999
Q ss_pred EEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecC---CCCCcccccccceeeeecCCCceeeEEEecccchhh--
Q 043456 292 CITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVS---GALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQ-- 366 (447)
Q Consensus 292 ~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t---~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~q-- 366 (447)
.||.+++ +.+++.++++.+.++|+.|||+++.+..++ +++.+.+...+|+|+|+|. +|.|+.+|++|+||+
T Consensus 242 ~f~~~e~--~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~--~~~e~~g~~~~~d~~L~ 317 (505)
T 1ati_A 242 YFVRPGE--DEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPH--GSLELEGIAQRTDFDLG 317 (505)
T ss_dssp EEECGGG--HHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETT--EEEEEEEEEECTTHHHH
T ss_pred EEECHHH--HHHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCC--CCccchhhhcccceecc
Confidence 9999998 999999999999999999999977777776 4555566778999999996 589999999999997
Q ss_pred ---h----------------hhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCC---------CCCcccCC
Q 043456 367 ---S----------------RRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQK---------EDGVEVPE 418 (447)
Q Consensus 367 ---s----------------~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~---------~~gi~iP~ 418 (447)
+ +|++++|.+.+ ++..|.+++.|++++++|+++||+|++++ ..|+.||.
T Consensus 318 ~~~~~~~~~~~~~~~~~n~~~~~~~~y~d~~---g~~~y~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~ 394 (505)
T 1ati_A 318 SHTKDQEALGITARVLRNEHSTQRLAYRDPE---TGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKP 394 (505)
T ss_dssp HHCSSTTTTTCCSCCCCCSCCCSCCCEECSS---SCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCG
T ss_pred hhhccccccceeeeecccccceeEEEEEcCC---CCeeecceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCc
Confidence 2 68999999763 34444444456788999999999998732 24589999
Q ss_pred cccCcCCCceeecCC
Q 043456 419 VLQPFMGGKTFLPFK 433 (447)
Q Consensus 419 ~L~py~~g~~~i~~~ 433 (447)
+|+||+ +.+||..
T Consensus 395 ~laP~~--v~Vip~~ 407 (505)
T 1ati_A 395 QLAPIK--VAVIPLV 407 (505)
T ss_dssp GGCSCS--EEEEESC
T ss_pred ccCCce--EEEEEcC
Confidence 999999 8899987
No 22
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=356.70 Aligned_cols=259 Identities=12% Similarity=0.028 Sum_probs=198.5
Q ss_pred HHHHHHHcCCcccccccc---ccCccce-eeccHHHHHHHHHHHHHHH-HHHHCC-CeEecCCccCcHHHHHHhCCcCCC
Q 043456 143 HVELVELLGIADLKKGAD---IAGGRGF-YLKGDGVRLNQALINFGLD-FLEKKS-YTLLHTPFFMRKEVMAKCAQLAQF 216 (447)
Q Consensus 143 H~~l~~~~~l~d~~~~~~---~sG~g~y-~l~~~ga~l~~aL~~~~~~-~~~~~G-~~~v~~P~l~~~~~~~~~G~~~~~ 216 (447)
-.+|+++-.++......- -.-+|.| +|.|.|+.|.++|+++++. +..+.| +.+|.+|. ..+|+.||||++|
T Consensus 69 l~~~~~rr~f~~~~~~~~~~~~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~ 145 (459)
T 3ikl_A 69 LLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAF 145 (459)
T ss_dssp HHHHHHHTTSBCSCTTTTCHHHHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCC
T ss_pred HHHHHHhcCcccccchhcccCCCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhh
Confidence 345666655544322100 0013345 9999999999999985555 545566 67799999 5569999999998
Q ss_pred cCccEEEecCCCccccccCCChhHHHHhhccccCCC-CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEec
Q 043456 217 DEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPS-ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 (447)
Q Consensus 217 ~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~-~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~ 295 (447)
. ++|+|+.++.+...|.+...|++ +||++++|+|+|||+|+|..| ..+||+|+|||+|+|+|.||.
T Consensus 146 ~------------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~-~~~GL~RvrEFtq~E~~~F~~ 212 (459)
T 3ikl_A 146 R------------GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQ-IRNGVKSIGEKTEASLVWFTP 212 (459)
T ss_dssp T------------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEEEEC
T ss_pred c------------ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeeccccccc-CCCCcccccceeeeeEEEEeC
Confidence 6 79999555555555777777887 999999999999999985212 568999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCc---EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcc-
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQMLKIP---YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLE- 371 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~- 371 (447)
|++ ++++++.+++....+|+.|||+ ||....+..+ |.+++|||+|+|. +|+|+.+||||+|||.++..
T Consensus 213 Pe~--~~e~~~~~~~~~~~~~~~LGi~~~~~r~~~~~~ee----A~~~~DiE~~~p~--G~~E~~g~sn~tDfqL~~~~~ 284 (459)
T 3ikl_A 213 PRT--SNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEE----GRKGNKLYYNFPW--GKELIETLWNLGDHELLHMYP 284 (459)
T ss_dssp GGG--HHHHHHHHHHHHHHHHHHHCSSGGGEEEEEECCSS----SSCEEEEEEECSS--CEEEEEEEEEEETHHHHHHSC
T ss_pred hhH--HHHHHHHHHHHHHHHHHHhCCChhhEEEeecCchH----HHhhcCeEEEcCC--ceEEEeeeeccchhhhhcccc
Confidence 999 9999999999999999999998 9999886555 6789999999999 59999999999999987743
Q ss_pred ---cEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCCCC-------------cccCCcccCcCCCceee
Q 043456 372 ---IRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-------------VEVPEVLQPFMGGKTFL 430 (447)
Q Consensus 372 ---i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~~g-------------i~iP~~L~py~~g~~~i 430 (447)
++|.+.+ ++..+++++++++++++|+++|+||++.+++| +.||.||+||+ +.+|
T Consensus 285 ~~~~~~~~~d---g~~k~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~q--V~Ii 354 (459)
T 3ikl_A 285 GNVSKLHGRD---GRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIK--VALD 354 (459)
T ss_dssp SCSSSSCCBS---SSCBCCCEEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCC--EEEE
T ss_pred ccCceeEccC---CCeeeeeEEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCce--EEEE
Confidence 5666543 33456666678999999999999998666544 89999999999 7777
No 23
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=2e-41 Score=354.43 Aligned_cols=281 Identities=13% Similarity=0.147 Sum_probs=234.6
Q ss_pred CCCCCCCCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcC
Q 043456 135 RTEPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLA 214 (447)
Q Consensus 135 ~~~~~~~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~ 214 (447)
|.+++.++|..|++. |+|+. +++|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|+.+|||+
T Consensus 35 ~~~a~~~~h~ll~r~-g~i~~------~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d 107 (458)
T 2i4l_A 35 PKEAEIVSHRLMLRA-GMLRQ------EAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYD 107 (458)
T ss_dssp CTTCCSHHHHHHHHT-TCEEE------EETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHH
T ss_pred hhhcCcchHHHHhhc-CCeec------cCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCcc
Confidence 446778999988765 88764 46899999999999999999999999999999999999999999999999999
Q ss_pred CCcCccEEEecC-CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEE
Q 043456 215 QFDEELYKVTGE-GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCI 293 (447)
Q Consensus 215 ~~~~~lf~i~~~-~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f 293 (447)
.|.++||.+.+. +++++|+||+|...+.+++..+.+|++||+|+|++++|||+|++ ..+||+|+|||+|.|+++|
T Consensus 108 ~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~----p~~Gl~R~REF~q~d~~~f 183 (458)
T 2i4l_A 108 AYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR----PRFGVMRGREFLMKDAYSF 183 (458)
T ss_dssp HSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS----CBTGGGBCSEEEEEEEEEE
T ss_pred ccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC----CCCCcccccceEEeEEEEE
Confidence 999999999876 57899999999999999999999999999999999999999976 3589999999999999999
Q ss_pred ecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccce-----------------eeeecCCCc----
Q 043456 294 TSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDL-----------------EAWFPASQT---- 352 (447)
Q Consensus 294 ~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~di-----------------E~w~p~~~~---- 352 (447)
+.+.. +++.++..|++.+.++|+.|||+|+++..+++.+|+..++++-. +.|......
T Consensus 184 ~~~~~-~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~ 262 (458)
T 2i4l_A 184 DVDEA-GARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGD 262 (458)
T ss_dssp ESSHH-HHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSC
T ss_pred ECCHH-HHHHHHHHHHHHHHHHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHh
Confidence 96532 38899999999999999999999999999999998887765310 011111100
Q ss_pred ----------e---------------------------eeEEEecccchhhhhhcccEEeccCCCCCceeEEEeeccccc
Q 043456 353 ----------Y---------------------------RELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLT 395 (447)
Q Consensus 353 ----------~---------------------------~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ 395 (447)
+ .+++.+..++...+.+++.+|.+. .|+...+| +.|+|+
T Consensus 263 l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~---~G~~~p~~-~~gfgi 338 (458)
T 2i4l_A 263 LTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGP---DGTDAPIH-GGSYGV 338 (458)
T ss_dssp CHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECT---TSCEEECE-EEEEEE
T ss_pred HHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEecccccccCCcEEECC---CCCEeceE-Eeeecc
Confidence 0 111111222333488999999764 45666666 469999
Q ss_pred chhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 396 ATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 396 ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+++|+++||+|++++++|+.||.|++||+ +.++|..
T Consensus 339 GveRli~al~e~~~d~~g~~~p~~~ap~~--v~vi~~~ 374 (458)
T 2i4l_A 339 GVSRLLGAIIEACHDDNGIIWPEAVAPFR--VTILNLK 374 (458)
T ss_dssp EHHHHHHHHHHHSEETTEECCCTTTCSCS--EEEEESS
T ss_pred cHHHHHHHHHHhhccccCCcCCcccCCce--EEEEecC
Confidence 99999999999999999999999999999 8888875
No 24
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1.4e-36 Score=318.67 Aligned_cols=278 Identities=16% Similarity=0.213 Sum_probs=214.4
Q ss_pred CCCHHHHHHHcCCccccccc---------cccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh
Q 043456 140 LKNHVELVELLGIADLKKGA---------DIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC 210 (447)
Q Consensus 140 ~~~H~~l~~~~~l~d~~~~~---------~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~ 210 (447)
.++|+++++.++++.-.... -.+++|+|.|+|.|+++.++|++++++.+.+.||++|.+|.|.+.++|.++
T Consensus 6 ~~~h~~~~~~~~~~~~~~h~~~~lg~~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s 85 (471)
T 3a32_A 6 DKTHIDYAYELDITVKPDSRVPVFNREFATFTGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVS 85 (471)
T ss_dssp -CCHHHHHHHTTSBCCTTSBCTTTCSBTHHHHCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHT
T ss_pred CCCHHHHHHHcCccccCCchhHHHHHhcCCccCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhc
Confidence 46777777777776111100 026899999999999999999999999999999999999999999999999
Q ss_pred CCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCC---CcCeEeeccccccccCccCCCCCCcCceeeeeeee
Q 043456 211 AQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPS---ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEK 287 (447)
Q Consensus 211 G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~---~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k 287 (447)
||++.|.++||+++..++.++|+||+|.+++.+|++.+.||+ +||+|+|++++|||+|.++ .++||+|+|||+|
T Consensus 86 g~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~---~~~Gl~R~REF~Q 162 (471)
T 3a32_A 86 GHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSG---SIYGLLRVRGFTQ 162 (471)
T ss_dssp CCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGG---GCBTTTBCSEEEE
T ss_pred cCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCc---ccccceeEEEEEE
Confidence 999999999999954467899999999999999999999998 9999999999999999863 3589999999999
Q ss_pred eeEEEEecCCcchHHHHHHHHHHHHHHHHHH-cCC-----cEEEEEecCC-----CCCccccccc---------------
Q 043456 288 VEQFCITSPNGNDSWDMHEEMIKNSEEFYQM-LKI-----PYQVVAIVSG-----ALNDAAAKKL--------------- 341 (447)
Q Consensus 288 ~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~-Lgl-----~yr~v~~~t~-----dlg~~a~~~~--------------- 341 (447)
.|+++||.+++ +.+++.+++..+.++|+. ||| +|+++..... +-.......+
T Consensus 163 ~~~e~f~~~~~--~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l 240 (471)
T 3a32_A 163 DDAHIIVPGGR--VIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRIN 240 (471)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEcChHH--HHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 999999999999999999 999 5886644432 1000000000
Q ss_pred -------------------ceeeeecC----CCceeeEEEecccchhh-hhhcccEEec--cCCCCCceeEEEeeccccc
Q 043456 342 -------------------DLEAWFPA----SQTYRELVSCSNCTDYQ-SRRLEIRYGQ--KKSNEQTKQYVHLLNSTLT 395 (447)
Q Consensus 342 -------------------diE~w~p~----~~~~~ev~s~sn~~D~q-s~rl~i~y~~--~~~~~~~~~~~htlngt~~ 395 (447)
.++..+.. .+...+++ ....|+. +++|+++|.+ .++.. .+.++|. +.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g--~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i~~--~i~G 315 (471)
T 3a32_A 241 EKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMG--TIQFDFNLPRRFRLYDVVREEFGIE-EVYIIHR--ALLG 315 (471)
T ss_dssp HHHCCEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEE--EEEEESSHHHHTTHHHHHHHHHCCS-CEEEEEE--EEEE
T ss_pred HhcCCceEecccchhhCCCccceEEeccHHhhhhhheee--eEEecccccccCCceEeccccCCce-eeEEEec--cccC
Confidence 12222211 12222222 1234664 8999999987 43222 4445562 3334
Q ss_pred chhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 396 ATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 396 ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
+++|++++++|++.+ .||.|++|++ +.++|..
T Consensus 316 gieRli~~lie~~~g----~~p~~~ap~q--v~Iip~~ 347 (471)
T 3a32_A 316 SIERFLGVYLEHRRG----RMPFTLAPIQ--FAVIAVK 347 (471)
T ss_dssp EHHHHHHHHHHHTTT----CCCGGGCSCS--EEEEEEE
T ss_pred cHHHHHHHHHHHhCC----CCCCCcCCce--EEEEEcc
Confidence 899999999999863 8999999998 7888864
No 25
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=4.4e-37 Score=320.15 Aligned_cols=272 Identities=12% Similarity=0.027 Sum_probs=211.2
Q ss_pred CCCHHHHHHHcCCccccccccccC-----ccce-eeccHHHHHHHHHHHHHHHHH--HHCCCeEecCCccCcHHHHHHh-
Q 043456 140 LKNHVELVELLGIADLKKGADIAG-----GRGF-YLKGDGVRLNQALINFGLDFL--EKKSYTLLHTPFFMRKEVMAKC- 210 (447)
Q Consensus 140 ~~~H~~l~~~~~l~d~~~~~~~sG-----~g~y-~l~~~ga~l~~aL~~~~~~~~--~~~G~~~v~~P~l~~~~~~~~~- 210 (447)
...+.+|+++.|++.... .+.| +|+| .|+|.|+.|.++|++++.+.+ .+.||.+|.+|.|.+..+|+++
T Consensus 24 ~~~~~~l~krrgf~~~s~--eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~ 101 (454)
T 1g5h_A 24 REALVDLCRRRHFLSGTP--QQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDS 101 (454)
T ss_dssp -CHHHHHHHHTTSBCCCG--GGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCC
T ss_pred HHHHHHHHHHcCCccccc--hhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccc
Confidence 456889999999986543 3322 2656 999999999999999999885 5899999999999999999987
Q ss_pred -CC---cCCCcCc----------cEEEe--cCCCccccccCCChhHHHHhhccccCCC-CcCeEeeccccccc---cCcc
Q 043456 211 -AQ---LAQFDEE----------LYKVT--GEGDDKYLIATAEQPLCAYHIDDWIHPS-ELPIRYAGYSSCFR---KEAG 270 (447)
Q Consensus 211 -G~---~~~~~~~----------lf~i~--~~~~~~~L~pTsE~~l~~l~~~~~~s~~-~LPlrl~~~s~~fR---~E~~ 270 (447)
|| |+++.++ ||.+- ..+..+||+|+.++.++..|++...|++ +||++++|+|+||| +|++
T Consensus 102 ~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s 181 (454)
T 1g5h_A 102 AFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ 181 (454)
T ss_dssp CCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC----
T ss_pred cCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc
Confidence 77 8888765 44320 0124789999777777777888877777 99999999999999 6986
Q ss_pred CCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc---EEEEEecCCCCCcccccccceeeee
Q 043456 271 SHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP---YQVVAIVSGALNDAAAKKLDLEAWF 347 (447)
Q Consensus 271 ~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dlg~~a~~~~diE~w~ 347 (447)
+ ++||+|+|||+|+|+|.||+|++ +.++++.+++.+..+|+.|||+ +|.... ..+. +..++|+|+|+
T Consensus 182 ~----~~Gl~R~REF~q~E~~~F~~pe~--~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~~-~~~~---a~~~~~ie~~~ 251 (454)
T 1g5h_A 182 T----PSSVTRVGEKTEASLVWFTPTRT--SSQWLDFWLRHRLLWWRKFAMSPSNFSSADC-QDEL---GRKGSKLYYSF 251 (454)
T ss_dssp ---------CEEEEEEEEEEEEEECHHH--HHHHHHHHHHHHHHHHHTTCSSGGGEEEEEE-ECTT---SCEEEEEEEEE
T ss_pred C----CCCccccCceehhheEEEeCHhh--HHHHHHHHHHHHHHHHHHcCCCceeEEecCC-HHHH---HhcCCCcEEec
Confidence 3 58999999999999999999988 9999999999999999999998 775543 2222 56889999999
Q ss_pred cCCCceeeEEEecccchhhh------hhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHHhcCCC----------
Q 043456 348 PASQTYRELVSCSNCTDYQS------RRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKE---------- 411 (447)
Q Consensus 348 p~~~~~~ev~s~sn~~D~qs------~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE~~q~~---------- 411 (447)
|. +|+|+.+|++|+||+. .|++++|.+. ++...+|+++. +++++|+++||||++.++
T Consensus 252 p~--g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d~----~~~~~P~vi~~-s~Gv~R~i~aile~~~~~~~~~~~~g~d 324 (454)
T 1g5h_A 252 PW--GKEPIETLWNLGDQELLHTYPGNVSTIQGRDG----RKNVVPCVLSV-SGDVDLGTLAYLYDSFQLAENSFARKKS 324 (454)
T ss_dssp TT--EEEEEEEEEEEESHHHHHHSTTCGGGSCEEET----TEEECCEEEEE-EEEHHHHHHHHHHHHEEC----------
T ss_pred CC--CceEEEEecCCCHHHHHhccCCceeeEEEECC----CCcEeeEEEeC-cccHHHHHHHHHHHhcchhhcccccCCc
Confidence 86 5889999999999974 4579999873 22344565543 578999998888875432
Q ss_pred ---CCcccCCcccCcCCCceee-cC
Q 043456 412 ---DGVEVPEVLQPFMGGKTFL-PF 432 (447)
Q Consensus 412 ---~gi~iP~~L~py~~g~~~i-~~ 432 (447)
.++.||.||+|++ +.+| |.
T Consensus 325 ~~r~~l~~P~~lAP~q--V~Ii~~~ 347 (454)
T 1g5h_A 325 LQRKVLKLHPCLAPIK--VALDVGK 347 (454)
T ss_dssp --CCEECCCTTTCSCC--EEEEECS
T ss_pred ccceeEecCcccCCCe--EEEEEeC
Confidence 2589999999999 7777 43
No 26
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.97 E-value=3.2e-31 Score=288.21 Aligned_cols=215 Identities=15% Similarity=0.155 Sum_probs=163.7
Q ss_pred CCHHHHHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHH-HCCCeEecCCccCcHHHHHHhCCcCCCcCc
Q 043456 141 KNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLE-KKSYTLLHTPFFMRKEVMAKCAQLAQFDEE 219 (447)
Q Consensus 141 ~~H~~l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~-~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~ 219 (447)
..-..|+.+.|++......--..+|+|.|+|.|+++.+.|++++++.+. ..||.+|.+|.|.+.++|+.||||++|.+.
T Consensus 68 ~~~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~ 147 (693)
T 2zt5_A 68 AKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADF 147 (693)
T ss_dssp HHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEE
T ss_pred HHHHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCccccccc
Confidence 4567899999998764322112389999999999999999999999987 679999999999999999999999999997
Q ss_pred cEEEecCC------------------------------------------------------------------------
Q 043456 220 LYKVTGEG------------------------------------------------------------------------ 227 (447)
Q Consensus 220 lf~i~~~~------------------------------------------------------------------------ 227 (447)
||...+.+
T Consensus 148 m~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlm 227 (693)
T 2zt5_A 148 MVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLM 227 (693)
T ss_dssp EEEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECC
T ss_pred ceeeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhhee
Confidence 77543221
Q ss_pred ----------CccccccCCChhHHHHhhccccC-CCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecC
Q 043456 228 ----------DDKYLIATAEQPLCAYHIDDWIH-PSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296 (447)
Q Consensus 228 ----------~~~~L~pTsE~~l~~l~~~~~~s-~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~ 296 (447)
...||+|-.-.+++..|++...+ |++||+++||+|++||+|.++ .+||+|+|||+|.|+++||.|
T Consensus 228 f~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisP----r~GLlR~REF~q~d~e~F~~p 303 (693)
T 2zt5_A 228 FKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISP----RSGLIRVREFTMAEIEHFVDP 303 (693)
T ss_dssp CEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSC----CSGGGSCSEEEEEEEEEEECT
T ss_pred eeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCC----CCCCccceeeEEccceEEeCc
Confidence 23444552233344444444444 899999999999999999874 579999999999999999999
Q ss_pred Ccch----------------------------------------HHHHHHHHHHHHHHHHHHcCCc---EEEEEecCCCC
Q 043456 297 NGND----------------------------------------SWDMHEEMIKNSEEFYQMLKIP---YQVVAIVSGAL 333 (447)
Q Consensus 297 e~~~----------------------------------------s~~~~~~~~~~~~~i~~~Lgl~---yr~v~~~t~dl 333 (447)
++.. ..+++..++..+.++|..||++ ++.......++
T Consensus 304 ~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~ 383 (693)
T 2zt5_A 304 SEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEM 383 (693)
T ss_dssp TCCCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGS
T ss_pred chhcchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhh
Confidence 8721 0266888999999999999996 44433323456
Q ss_pred CcccccccceeeeecCCCceeeEEEecc
Q 043456 334 NDAAAKKLDLEAWFPASQTYRELVSCSN 361 (447)
Q Consensus 334 g~~a~~~~diE~w~p~~~~~~ev~s~sn 361 (447)
...+...+|+|+..+. +|.|+..|..
T Consensus 384 a~ya~~~~d~e~~~~~--g~~e~~~~a~ 409 (693)
T 2zt5_A 384 AHYACDCWDAESKTSY--GWIEIVGCAD 409 (693)
T ss_dssp CTTCSSEEEEEEEETT--EEEEEEEEEC
T ss_pred ccchhhhhhehhhccC--ChHHHHHHHH
Confidence 6667777888887754 4677666553
No 27
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.93 E-value=1.4e-25 Score=231.79 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=129.2
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh--CCcCCCcCccEEEecC-CCccccccCCCh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC--AQLAQFDEELYKVTGE-GDDKYLIATAEQ 238 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~--G~~~~~~~~lf~i~~~-~~~~~L~pTsE~ 238 (447)
..+|++.|+|.|+++.++|++++++.+.++||++|.||.|.+.++|..+ |||+.|.++||++.+. ++.++|+||+++
T Consensus 4 ~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~ 83 (420)
T 1qe0_A 4 IPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTA 83 (420)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHH
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChH
Confidence 4579999999999999999999999999999999999999999999999 8999999999999764 578999999999
Q ss_pred hHHHHhhccccCC-CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHP-SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQ 317 (447)
Q Consensus 239 ~l~~l~~~~~~s~-~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~ 317 (447)
+++.++++...++ ++||+|+|++++|||+|.. | -.|+|||+|.|+++|+.+++ ..+ .+++..+.++|+
T Consensus 84 ~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~--~-----~gR~reF~q~~~e~~~~~~~--~~d--~e~i~~~~~~l~ 152 (420)
T 1qe0_A 84 AVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERK--Q-----KGRYRQFNQFGVEAIGAENP--SVD--AEVLAMVMHIYQ 152 (420)
T ss_dssp HHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------------CCEEEEEEEEEESCCCH--HHH--HHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCeEEEEecCEeecCCC--c-----CCCcccEEEeeEEEECCCCc--hhH--HHHHHHHHHHHH
Confidence 9999999999999 9999999999999999953 2 24999999999999999876 443 678889999999
Q ss_pred HcCCc-EEEEEec
Q 043456 318 MLKIP-YQVVAIV 329 (447)
Q Consensus 318 ~Lgl~-yr~v~~~ 329 (447)
.|||+ |++..-.
T Consensus 153 ~lgl~~~~i~l~~ 165 (420)
T 1qe0_A 153 SFGLKHLKLVINS 165 (420)
T ss_dssp HTTCCCEEEEEEE
T ss_pred HcCCCceEEEEcc
Confidence 99998 7765443
No 28
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.87 E-value=1.2e-21 Score=205.19 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=138.5
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CC-cCCCcCccEEEecC--CCccccccCCC
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQ-LAQFDEELYKVTGE--GDDKYLIATAE 237 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~-~~~~~~~lf~i~~~--~~~~~L~pTsE 237 (447)
..+|++.|+|.++++.+.|++++++.+.++||++|.||.|.+.++|.++ |+ |+.+.++||.+.+. ++.++|+|+.+
T Consensus 34 ~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t 113 (467)
T 4e51_A 34 GVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENT 113 (467)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSH
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccH
Confidence 5689999999999999999999999999999999999999999999999 98 77788999999764 57899999999
Q ss_pred hhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHH
Q 043456 238 QPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQ 317 (447)
Q Consensus 238 ~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~ 317 (447)
.+++.++.....++ +||+|+|++++|||+|.... -|+|||+|.+.++||.+++ ..+ .+++..+.++|+
T Consensus 114 ~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~-------gR~ReF~Q~d~ei~g~~~~--~ad--aEvi~l~~~~l~ 181 (467)
T 4e51_A 114 AAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQR-------GRYRQFHQVGVEALGFAGP--DAD--AEIVMMCQRLWE 181 (467)
T ss_dssp HHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC----------CCSEEEEEEEEEETCCCS--HHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHccccc-CCCEEEEEEccEEccCCCCC-------CCcCceEEEEEEEEeCCCh--HHH--HHHHHHHHHHHH
Confidence 99999999988888 69999999999999996422 3999999999999999877 433 689999999999
Q ss_pred HcCCc-EEEEEecC
Q 043456 318 MLKIP-YQVVAIVS 330 (447)
Q Consensus 318 ~Lgl~-yr~v~~~t 330 (447)
.||++ |++ .+++
T Consensus 182 ~lGl~~~~i-~in~ 194 (467)
T 4e51_A 182 DLGLTGIKL-EINS 194 (467)
T ss_dssp HHTCCCEEE-EEEE
T ss_pred HcCCCceEE-EEeC
Confidence 99995 664 4444
No 29
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.84 E-value=1.9e-20 Score=193.43 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=139.1
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CC-cCCCcCccEEEecC-CCccccccCCCh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQ-LAQFDEELYKVTGE-GDDKYLIATAEQ 238 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~-~~~~~~~lf~i~~~-~~~~~L~pTsE~ 238 (447)
.++|++.|+|.++++.+.|++.+++.+.++||++|.||.|.+.++|..+ |+ |+.+.++||++.|+ ++.++|+|+.+.
T Consensus 5 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~ 84 (421)
T 1h4v_B 5 AVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTA 84 (421)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchH
Confidence 5689999999999999999999999999999999999999999999998 87 89999999999876 678999999999
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM 318 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~ 318 (447)
+++.++.....++++||+|+|+++++||+|. + + .| |.|||+|.+.++|+.++. .++ .+++.++.++|+.
T Consensus 85 ~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~-p-~---~g--R~REf~Q~g~e~~g~~~~-~ad---~e~i~~~~~~l~~ 153 (421)
T 1h4v_B 85 AMVRAYLEHGMKVWPQPVRLWMAGPMFRAER-P-Q---KG--RYRQFHQVNYEALGSENP-ILD---AEAVVLLYECLKE 153 (421)
T ss_pred HHHHHHHhccccccCCCeEEEEecCeecCCC-C-C---CC--CcccEEEccEEEECCCCh-hhh---HHHHHHHHHHHHH
Confidence 9999998887889999999999999999994 2 2 45 999999999999998765 233 3678899999999
Q ss_pred cCCc-EEEEEe
Q 043456 319 LKIP-YQVVAI 328 (447)
Q Consensus 319 Lgl~-yr~v~~ 328 (447)
||++ |+++..
T Consensus 154 lgl~~~~i~i~ 164 (421)
T 1h4v_B 154 LGLRRLKVKLS 164 (421)
T ss_pred cCCCceEEEEc
Confidence 9998 775543
No 30
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.82 E-value=7.8e-20 Score=188.89 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=136.8
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CC-cCCCcCccEEEecC-CCccccccCCCh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQ-LAQFDEELYKVTGE-GDDKYLIATAEQ 238 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~-~~~~~~~lf~i~~~-~~~~~L~pTsE~ 238 (447)
.++|++.|+|.++++.+.+++.+++.+.++||++|.||.|-+.++|..+ |+ |+.+.++||++.|+ ++.++|+|+.+.
T Consensus 6 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~ 85 (423)
T 1htt_A 6 AIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTA 85 (423)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHH
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchH
Confidence 5689999999999999999999999999999999999999999999998 87 88888999999876 678999999999
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM 318 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~ 318 (447)
+++.++... .++++||+|+|+++++||+|. + + .| |.|||+|.+.++|+.++. .++ .+++.++.++|+.
T Consensus 86 ~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~-p-~---~g--R~Ref~Q~d~e~~g~~~~-~ad---~e~i~~~~~~l~~ 153 (423)
T 1htt_A 86 GCVRAGIEH-GLLYNQEQRLWYIGPMFRHER-P-Q---KG--RYRQFHQLGCEVFGLQGP-DID---AELIMLTARWWRA 153 (423)
T ss_dssp HHHHHHHHH-TCSTTCCEEEEEEEEEECCCC-C-C---SS--CCSEEEEEEEEEESCCSH-HHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccccCCCeEEEEEcCEecCCC-C-C---CC--ccceeEEeeEEEECCCCc-hhh---HHHHHHHHHHHHH
Confidence 999998765 458899999999999999994 2 2 45 999999999999998765 232 3567899999999
Q ss_pred cCC--cEEEEEec
Q 043456 319 LKI--PYQVVAIV 329 (447)
Q Consensus 319 Lgl--~yr~v~~~ 329 (447)
||+ +|+++...
T Consensus 154 lgl~~~~~i~i~~ 166 (423)
T 1htt_A 154 LGISEHVTLELNS 166 (423)
T ss_dssp HTCGGGCEEEEEE
T ss_pred CCCCCCcEEEEcC
Confidence 999 48766544
No 31
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.81 E-value=1.3e-19 Score=187.94 Aligned_cols=154 Identities=12% Similarity=0.146 Sum_probs=135.8
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHH-hCCcCCCcCccEEEecC-CCccccccCCChh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAK-CAQLAQFDEELYKVTGE-GDDKYLIATAEQP 239 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~-~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~ 239 (447)
.++|++.|+|.++++.+.|++.+++.+.++||++|.||.|.+.++|.. +|+ .+.++||++.|+ ++.++|+|+.+.+
T Consensus 8 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~~l~LrPd~t~~ 85 (434)
T 1wu7_A 8 KIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGREVTLIPEATPS 85 (434)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSCEEEECSCSHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCCEEEeCCCChHH
Confidence 578999999999999999999999999999999999999999999998 688 678899999876 6789999999999
Q ss_pred HHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc
Q 043456 240 LCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML 319 (447)
Q Consensus 240 l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L 319 (447)
++.++... .++ +||+|+|+++++||+|. + + .| |.|||+|.+.++|+.+++ .. -.+++.++.++|+.|
T Consensus 86 ~aR~~~~~-~~~-~lP~rl~~~g~vfR~er-p-~---~g--R~REF~Q~d~ei~g~~~~--~a--d~E~i~~~~~~l~~l 152 (434)
T 1wu7_A 86 TVRMVTSR-KDL-QRPLRWYSFPKVWRYEE-P-Q---AG--RYREHYQFNADIFGSDSP--EA--DAEVIALASSILDRL 152 (434)
T ss_dssp HHHHHTTC-TTC-CSSEEEEECCEEECCCC-S-C---SS--CCSEEEEEEEEEESCCSH--HH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-CCC-CCCeEEEEEcCeecCCC-C-C---CC--CccceEEeeEEEEcCCCh--Hh--hHHHHHHHHHHHHHc
Confidence 99999877 666 89999999999999994 2 2 45 999999999999998865 32 236789999999999
Q ss_pred CCc--EEEEEecC
Q 043456 320 KIP--YQVVAIVS 330 (447)
Q Consensus 320 gl~--yr~v~~~t 330 (447)
|++ |+++....
T Consensus 153 gl~~~~~i~l~~~ 165 (434)
T 1wu7_A 153 GLQDIYEIRINSR 165 (434)
T ss_dssp TTTTSEEEEEEEH
T ss_pred CCCCceEEEECCh
Confidence 998 88765544
No 32
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.77 E-value=2.8e-18 Score=172.79 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=130.7
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh--CCcCCCcCccEEEecC-CCccccccCCCh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC--AQLAQFDEELYKVTGE-GDDKYLIATAEQ 238 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~--G~~~~~~~~lf~i~~~-~~~~~L~pTsE~ 238 (447)
.++|++.|+|.++++.+.+++.+++.+.++||++|.||.|-+.++|..+ |+++.+.++||++.|+ ++.++|+|....
T Consensus 24 ~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~ 103 (344)
T 1z7m_A 24 LPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTL 103 (344)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcH
Confidence 5689999999999999999999999999999999999999999999987 8999899999999775 678999999999
Q ss_pred hHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHH
Q 043456 239 PLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQM 318 (447)
Q Consensus 239 ~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~ 318 (447)
+++-++... +.++|+|+|++++|||+|.. + .| |.|||+|.+.++|+.++. .++ .+++..+.++|+.
T Consensus 104 ~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p--~---~g--R~REF~Q~g~ei~g~~~~-~aD---aEvi~l~~~~l~~ 169 (344)
T 1z7m_A 104 PLVRLYSQI---KDSTSARYSYFGKIFRKEKR--H---KG--RSTENYQIGIELFGESAD-KSE---LEILSLALQVIEQ 169 (344)
T ss_dssp HHHHHHHTC---CSCCCEEEEEEEECCCCCC--------------CCEEEEEEEESSCHH-HHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCCCeEEEEECcEEccCCC--C---CC--CcceeEEEEEEEEcCCCc-HHH---HHHHHHHHHHHHH
Confidence 999998876 77899999999999999943 2 34 999999999999997643 122 4788999999999
Q ss_pred cCCc-EEEEEec
Q 043456 319 LKIP-YQVVAIV 329 (447)
Q Consensus 319 Lgl~-yr~v~~~ 329 (447)
||++ |++..-.
T Consensus 170 lgl~~~~i~l~~ 181 (344)
T 1z7m_A 170 LGLNKTVFEIGS 181 (344)
T ss_dssp HTCSSEEEEEEE
T ss_pred CCCCcEEEEECC
Confidence 9997 7754433
No 33
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.72 E-value=1.1e-16 Score=157.30 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCC--CcCccEEEecCCCccccccCCChhHHHHhhccccCCCCc
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQ--FDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~--~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
.+++++++++.+.+.||++|.+|.|.+.++|..+|+++. +-..++.++ ++++|+||.+++++.+++....+ +++
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~---e~~~LRp~l~p~l~~~~r~~~~~-~~~ 148 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLD---GKKCLRPMLAPNLYTLWRELERL-WDK 148 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEE---TTEEECSCSHHHHHHHHHHHTTT-SCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccc---cchhhhhcChHHHHHHHHHHHhC-CCC
Confidence 478899999999999999999999999999999998873 223344554 46899999999998887776555 899
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC-cEEEEEecCCCC
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI-PYQVVAIVSGAL 333 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl-~yr~v~~~t~dl 333 (447)
|+|++++|+|||+|.. |..|+|||+|+|++.++.++. . .|.++...++.+|+.||+ +|+.+.-+ .+.
T Consensus 149 PlrlfeiG~vFR~E~~-------~~~r~~EF~qle~~i~g~~~~--~--~f~elkg~le~ll~~LGl~~~~~~~~s-~e~ 216 (288)
T 3dsq_A 149 PIRIFEIGTCYRKESQ-------GAQHLNEFTMLNLTELGTPLE--E--RHQRLEDMARWVLEAAGIREFELVTES-SVV 216 (288)
T ss_dssp CEEEEEEEEEECSCCS-------SSCCCSEEEEEEEEEETCCGG--G--HHHHHHHHHHHHHHHHTCCCCEEEECC-CCS
T ss_pred CEEEEEEeeEEecCCC-------CCCcCccEEEEEEEEEcCCch--h--hHHHHHHHHHHHHHHcCCCCcEEecCC-cce
Confidence 9999999999999974 345889999999999998644 3 488999999999999999 68866543 222
Q ss_pred CcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHHHH
Q 043456 334 NDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILE 406 (447)
Q Consensus 334 g~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~allE 406 (447)
- .+.+|+- ..|.||++|+.-.....++++| + . .|. |.|++++|++..+..
T Consensus 217 ~---~~~~~l~------~~~~eig~~Gv~p~vl~~~~gi---~------~---~~~--gfglglerl~m~~~g 266 (288)
T 3dsq_A 217 Y---GDTVDVM------KGDLELASGAMGPHFLDEKWEI---F------D---PWV--GLGFGLERLLMIREG 266 (288)
T ss_dssp S---CCCEEEE------ETTEEEEEEEEESCTTTTTTTC---C------S---CEE--EEEEEHHHHHHHHHT
T ss_pred E---EEEEEEE------eCCEEEEEEEecHHHHHHhcCC---C------C---CeE--EEEECHHHHHHHHcC
Confidence 1 2334442 2368999888222212144444 1 1 232 568899999866543
No 34
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.71 E-value=4.3e-17 Score=165.74 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=131.0
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCc-CccEEEecC-CCccccccCCChh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFD-EELYKVTGE-GDDKYLIATAEQP 239 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~-~~lf~i~~~-~~~~~L~pTsE~~ 239 (447)
..+|++.|+|.++++.+.|++.+++.+.++||++|.||.|-+.++|..+| +.+. ++||.+.|. ++.++|+|..+.+
T Consensus 25 ~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~~~my~~~D~~g~~l~LRpd~T~~ 102 (373)
T 3rac_A 25 RPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESSRDWIRLFDGGGDAVALRPEMTPS 102 (373)
T ss_dssp CCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSCCCCCBCCCCSSSCEEECSSSHHH
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcC--CccchhceEEEECCCCCEEEECCcCHHH
Confidence 45799999999999999999999999999999999999999999999987 4566 799999765 6789999999999
Q ss_pred HHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc
Q 043456 240 LCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML 319 (447)
Q Consensus 240 l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L 319 (447)
++-++..... ..++|+|+|++++|||+|..+.+ ...+.-|.|||+|.+.++|+.+++ .... .+++..+.++|+.|
T Consensus 103 ~aR~~~~~~~-~~~~P~r~~y~g~vfR~e~~g~~-~~~~~gR~ReF~Q~g~ei~g~~d~--~~aD-aEvi~l~~~~l~~l 177 (373)
T 3rac_A 103 IARMAAPRVA-AGRTPIRWCYCERVYRRTDDPAS-LSWASGKAAESTQVGIERIGEEAS--VDVD-MDVLRLLHEASAAA 177 (373)
T ss_dssp HHHHHHHHHH-TTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSCCC--HHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-cCCCCeEEEEEcceEccCCCccc-ccccCCccceeEEeeeEEECCCCC--HHHH-HHHHHHHHHHHHHc
Confidence 9999887543 37899999999999999964111 000344999999999999999865 4433 47899999999999
Q ss_pred CCc-EEEEEecCC
Q 043456 320 KIP-YQVVAIVSG 331 (447)
Q Consensus 320 gl~-yr~v~~~t~ 331 (447)
|++ |++ .+++.
T Consensus 178 gl~~~~i-~l~~~ 189 (373)
T 3rac_A 178 GVRHHRI-VVSHA 189 (373)
T ss_dssp TCCSCEE-EEEET
T ss_pred CCCceEE-EecCH
Confidence 995 664 45444
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.68 E-value=2.8e-16 Score=161.16 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=130.6
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhH
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPL 240 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l 240 (447)
...|++.|+|.++++.+.|++.+++.+.++||++|.||.|-..++|..+| +...++||.+.|+ ++.++|+|....++
T Consensus 12 ~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~g~~l~LRpd~T~~~ 89 (400)
T 3od1_A 12 KPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLRPDMTAPI 89 (400)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTTSCEEEECSCSHHHH
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCCCCEEEECCCCHHHH
Confidence 46899999999999999999999999999999999999999999999887 5667899999776 67899999999999
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcC
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lg 320 (447)
+-++... ..+.++|+|+|++++|||+|.. + .| |.|||+|.+.++|+.++. ..+ .+++..+.++|+.||
T Consensus 90 aR~~~~~-~~~~~~P~r~~y~g~vfR~e~~--~---~g--R~Ref~Q~g~ei~G~~~~--~aD--aEvi~l~~~~l~~lg 157 (400)
T 3od1_A 90 ARLVASS-LKDRAYPLRLAYQSNVYRAQQN--E---GG--KPAEFEQLGVELIGDGTA--SAD--GEVIALMIAALKRAG 157 (400)
T ss_dssp HHHHHHH-CSSSCSCEEEEEEEEEECCCC--------C--CCSEEEEEEEEEESCCSH--HHH--HHHHHHHHHHHHHTT
T ss_pred HHHHHhh-cccCCCCeEEEEEcCEEeCCCC--C---CC--CCCccEEeEEEEECCCCh--HhH--HHHHHHHHHHHHHCC
Confidence 9988765 4568899999999999999953 1 23 999999999999998754 222 478999999999999
Q ss_pred Cc-EEEE
Q 043456 321 IP-YQVV 326 (447)
Q Consensus 321 l~-yr~v 326 (447)
++ |++.
T Consensus 158 l~~~~i~ 164 (400)
T 3od1_A 158 LSEFKVA 164 (400)
T ss_dssp CCSEEEE
T ss_pred CCceEEE
Confidence 95 6644
No 36
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.64 E-value=6.4e-16 Score=161.05 Aligned_cols=154 Identities=13% Similarity=0.137 Sum_probs=130.0
Q ss_pred cCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHh-CCcCCCcCccEEEecC-CCccccccCCChh
Q 043456 162 AGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKC-AQLAQFDEELYKVTGE-GDDKYLIATAEQP 239 (447)
Q Consensus 162 sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~-G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~ 239 (447)
...|++.|+|.++++.+.|++.+.+.+.++||++|.||.|-+.++|... |+. +.++||.+.|. ++.++|+|..+.+
T Consensus 31 ~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g~~l~LRpd~T~~ 108 (456)
T 3lc0_A 31 PVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGGHRVALRPEMTPS 108 (456)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSSCEEEECSCSHHH
T ss_pred CCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCCCEEecCCcCHHH
Confidence 4689999999999999999999999999999999999999999999864 773 66899999776 6789999999999
Q ss_pred HHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc
Q 043456 240 LCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML 319 (447)
Q Consensus 240 l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L 319 (447)
++-++.... .+.++|+|+|++++|||+|... .| |.|||+|.+..+|+.++. ..+ .+++..+.++|+.|
T Consensus 109 ~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~-----~g--R~ReF~Q~g~ei~G~~~~--~~D--aEvi~l~~~~l~~l 176 (456)
T 3lc0_A 109 LARLLLGKG-RSLLLPAKWYSIPQCWRYEAIT-----RG--RRREHYQWNMDIVGVKSV--SAE--VELVCAACWAMRSL 176 (456)
T ss_dssp HHHHHHHSC-TTCCSSEEEEECCEEECCCC------------CCEEEEEEEEEESCCST--HHH--HHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-cccCCCEEEEEeccEEecCCCC-----CC--CccceEEEEEEEEcCCCh--Hhh--HHHHHHHHHHHHHc
Confidence 999988764 4678999999999999999632 24 999999999999999765 332 37899999999999
Q ss_pred CC---cEEEEEecC
Q 043456 320 KI---PYQVVAIVS 330 (447)
Q Consensus 320 gl---~yr~v~~~t 330 (447)
|+ +|++ .+++
T Consensus 177 gl~~~~~~i-~in~ 189 (456)
T 3lc0_A 177 GLSSKDVGI-KVNS 189 (456)
T ss_dssp TCCTTTEEE-EEEE
T ss_pred CCCCCceEE-EEcC
Confidence 99 4764 4444
No 37
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.56 E-value=2.3e-14 Score=149.82 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=128.4
Q ss_pred HHHHcCCccccccccccCccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCc-cEEEe
Q 043456 146 LVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEE-LYKVT 224 (447)
Q Consensus 146 l~~~~~l~d~~~~~~~sG~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~-lf~i~ 224 (447)
+|.+.+.+.++. -.|+.-|+|..+.+.+.|++.+.+.+.++||++|.||.+-..++|...| +.. .+ ||.+.
T Consensus 3 ~~~~~~~~~~~~-----p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~~-ke~m~~~~ 74 (465)
T 3net_A 3 AMAKNDKINFST-----PSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQG-DNIIYGLE 74 (465)
T ss_dssp ------CCCCSC-----CTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC---CBEEEEE
T ss_pred cccCCccccccC-----CCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CCC-ccceEEEe
Confidence 456677777654 4788999999999999999999999999999999999999999999887 333 45 99997
Q ss_pred cC----------------CCccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeee
Q 043456 225 GE----------------GDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKV 288 (447)
Q Consensus 225 ~~----------------~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~ 288 (447)
+. ++.++|+|....|++-++.... .+..+|+|+|++++|||+|... .| |.|||+|.
T Consensus 75 d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~-----~g--r~Ref~Q~ 146 (465)
T 3net_A 75 PILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERAK-----DG--RFRQFRQC 146 (465)
T ss_dssp EEC----------------CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC-------------CCEEEEE
T ss_pred cccccccccccccccCCCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCCC-----CC--CcceeEEe
Confidence 65 5789999999999999988765 4678999999999999999532 23 99999999
Q ss_pred eEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-EEEEEec
Q 043456 289 EQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-YQVVAIV 329 (447)
Q Consensus 289 e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr~v~~~ 329 (447)
+..+|+.++. .+... .+++..+.++|+.||++ |++ .++
T Consensus 147 g~ei~G~~~~-~a~~D-aEvi~l~~~~l~~lgl~~~~i-~in 185 (465)
T 3net_A 147 DIDVVGREKL-SLLYD-AQMPAIITEIFEAVNIGDFVI-RIN 185 (465)
T ss_dssp EEEEECSSCC-CHHHH-HHHHHHHHHHHHHHTCSCEEE-EEE
T ss_pred eEEEECCCCc-cchhh-HHHHHHHHHHHHHcCCCceEE-EEC
Confidence 9999998754 24111 27899999999999996 654 444
No 38
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=144.06 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=119.1
Q ss_pred CccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHH
Q 043456 163 GGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLC 241 (447)
Q Consensus 163 G~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~ 241 (447)
-.|++-|+|.++++.+.+++.+++.+.++||++|.||.|-+.++|.+... ...++||.+.|+ |+.++|+|-...|++
T Consensus 17 p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~f~D~~g~~l~LRPd~T~~~a 94 (464)
T 4g84_A 17 PKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQGGELLSLRYDLTVPFA 94 (464)
T ss_dssp CTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBCCCSSCCEEECSCSHHHHH
T ss_pred CCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEEEECCCCCEEEeCCcCcHHHH
Confidence 46899999999999999999999999999999999999999999965432 224679998876 678999996666777
Q ss_pred HHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCC
Q 043456 242 AYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKI 321 (447)
Q Consensus 242 ~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl 321 (447)
-++.. ++.+|+|+|+++++||+|. + ..|..|.|||+|.+..+|+.++. .... .+++..+.++|+.||+
T Consensus 95 R~~~~----~~~~p~k~~y~g~vfR~er-p----~~~~gR~Ref~Q~g~ei~G~~~~--~~aD-aEvi~l~~~~l~~lgl 162 (464)
T 4g84_A 95 RYLAM----NKLTNIKRYHIAKVYRRDN-P----AMTRGRYREFYQCDFDIAGNFDP--MIPD-AECLKIMCEILSSLQI 162 (464)
T ss_dssp HHHHH----TTCSCEEEEEEEEEECCCC-----------CCSEEEEEEEEEESCCST--THHH-HHHHHHHHHHHHHHTC
T ss_pred HHHHh----cCCCCceeEEEecceeccC-C----ccccCccceeeecceeccCCccc--hhhH-HHHHHHHHHHHHHhCC
Confidence 66543 4678999999999999993 2 13556999999999999987654 3222 2578889999999999
Q ss_pred cEEEEEec
Q 043456 322 PYQVVAIV 329 (447)
Q Consensus 322 ~yr~v~~~ 329 (447)
.-..+.++
T Consensus 163 ~~~~i~i~ 170 (464)
T 4g84_A 163 GDFLVKVN 170 (464)
T ss_dssp CCEEEEEE
T ss_pred CCcceeec
Confidence 74445554
No 39
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=146.38 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=118.2
Q ss_pred ccceeeccHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC-CCccccccCCChhHHH
Q 043456 164 GRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE-GDDKYLIATAEQPLCA 242 (447)
Q Consensus 164 ~g~y~l~~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~-~~~~~L~pTsE~~l~~ 242 (447)
.|+.-|+|.++++.+.+++.+++.+.++||++|.||.|-+.++|.+.. ....++||.+.|+ |+.++|+|-...|++-
T Consensus 71 ~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~--ge~~~~my~f~D~~g~~l~LRPd~T~~~aR 148 (517)
T 4g85_A 71 KGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKY--GEDSKLIYDLKDQGGELLSLRYDLTVPFAR 148 (517)
T ss_dssp TTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCTTSCCEEECSCSHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhccc--CcCcceeEEEECCCCCEEEeCCcCcHHHHH
Confidence 578889999999999999999999999999999999999999996543 2234679998876 6789999977778877
Q ss_pred HhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 243 YHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 243 l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
++.. ++.+|+|+|+++++||+|. + | ..+| |.|||++.+..+|+.++. .... .+++..+.++|+.||+.
T Consensus 149 ~~~~----~~~~p~k~yyig~vfR~Er-p-~-~~~G--R~ReF~Q~g~ei~G~~~~--~~aD-aEvi~l~~~~l~~lgl~ 216 (517)
T 4g85_A 149 YLAM----NKLTNIKRYHIAKVYRRDN-P-A-MTRG--RYREFYQCDFDIAGNFDP--MIPD-AECLKIMCEILSSLQIG 216 (517)
T ss_dssp HHHH----TTCSCEEEEEEEEEECCCC------------CCEEEEEEEEEESCCCT--THHH-HHHHHHHHHHHHHHCCC
T ss_pred HHHh----CCCCCceeEEEeceEeccC-c-c-cccC--ccceeeeeceeccCCccc--hHHH-HHHHHHHHHHHHhhcCC
Confidence 6653 4668999999999999994 2 1 2345 999999999999998765 3323 25788899999999997
Q ss_pred EEEEEecC
Q 043456 323 YQVVAIVS 330 (447)
Q Consensus 323 yr~v~~~t 330 (447)
-..+.++.
T Consensus 217 ~~~i~in~ 224 (517)
T 4g85_A 217 DFLVKVND 224 (517)
T ss_dssp CEEEEEEE
T ss_pred cccccccc
Confidence 44445543
No 40
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.30 E-value=1.7e-11 Score=120.30 Aligned_cols=133 Identities=16% Similarity=0.255 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCC--CcCccEEEecCCCccccccCCChhHHHHhhccccCCCCc
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQ--FDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~--~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
...+++.+++.+.+.||++|.||.|+..+.+...+.... ..+++|.++ +.++|+||...++...++. ..+...+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~LR~slsp~L~~~l~~-n~~~~~~ 154 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLTPNLYNYLRK-LDRALPD 154 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEET---TTEEECSCSHHHHHHHHHH-HTTTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeC---CCeeEcccChHHHHHHHHH-hhccCCC
Confidence 467888888899999999999999999999988876543 345677773 4789999988887765543 2455689
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVV 326 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~yr~v 326 (447)
|+|+|++|+|||+|... --|.+||+|+|++.+..... |.++...++.+++.||++|+..
T Consensus 155 p~rlfeiG~vFR~E~~~-------~~~~~Ef~ql~~~~~g~~~~------f~elkg~le~ll~~lGl~~~~~ 213 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESDG-------KEHLEEFTMLVFWQMGSGCT------RENLESIITDFLNHLGIDFKIV 213 (290)
T ss_dssp SEEEEEEEEEECCCSCS-------SSCCSEEEEEEEEEESTTCC------HHHHHHHHHHHHHHHTCCCEEE
T ss_pred CeEEEEEcCEEecCCCC-------CcCcchheEEEEEEEcCChH------HHHHHHHHHHHHHHcCCCcEEe
Confidence 99999999999999532 22789999999988765433 6788999999999999998764
No 41
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.21 E-value=1.2e-11 Score=120.52 Aligned_cols=125 Identities=10% Similarity=-0.044 Sum_probs=100.6
Q ss_pred HHHHHHH--HHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCCCC-cC
Q 043456 179 ALINFGL--DFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSE-LP 255 (447)
Q Consensus 179 aL~~~~~--~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~~-LP 255 (447)
.|+++++ +.+.++||++|.||.|-+.++|.. + +|. +..++.++|+|..+.|++ .+ ...+.+ +|
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d-~f~-d~~g~~l~LRpd~T~~~a---~~-~~~~~~~~p 70 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N-FFL-DRKGNLFSIREDFTKTVL---NH-RKRYSPDSQ 70 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S-CEE-ETTSCEEEECCCHHHHHH---HH-HTTCTTCCC
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c-ccC-CCCCCEEEeCCcChHHHH---HH-HhhcCCCCc
Confidence 4677777 889999999999999999998855 1 552 334689999999999998 22 234677 99
Q ss_pred eEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-EEEEEecCCC
Q 043456 256 IRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-YQVVAIVSGA 332 (447)
Q Consensus 256 lrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr~v~~~t~d 332 (447)
+|++.+++|||+|.. | - |||++.+.++|+.+++ ..+ .+++..+.++|+.||++ |. +.+++..
T Consensus 71 ~R~~y~g~vfR~e~~--~-----~---Ref~Q~g~ei~g~~~~--~~D--aEvi~l~~~~l~~lgl~~~~-i~l~~~~ 133 (275)
T 1usy_A 71 IKVWYADFVYRYSGS--D-----L---VAEYQLGLEKVPRNSL--DDS--LEVLEIIVESASEFFEGPVI-VEIGHTG 133 (275)
T ss_dssp EEEECCEEEEEEETT--E-----E---EEEEEEEEEEESCCSH--HHH--HHHHHHHHHHHHHHCCSCEE-EEEEETT
T ss_pred eEEEEeceEEecCCC--C-----C---CeeeEeCEEEecCCCc--hhH--HHHHHHHHHHHHHcCCCCeE-EEeCCHH
Confidence 999999999999964 3 1 9999999999999876 443 68999999999999996 65 4566554
No 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=98.79 E-value=6e-08 Score=95.25 Aligned_cols=124 Identities=13% Similarity=0.056 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHCCCeEecCCccCcH-HHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhcccc
Q 043456 171 GDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRK-EVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 171 ~~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~-~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
..-.++...+++.+++.+.+.||.+|.||.|... +++..+..-+. .++|.+.--+..++|..+.|..+-.+..
T Consensus 12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~~~~~~~~L~~Spe~~~~~l~~---- 85 (294)
T 1nnh_A 12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVEIYGVKMRLTHSMILHKQLAIA---- 85 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEEETTEEEEECSCSHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEEcCCCCEEeccChHHHHHHHhh----
Confidence 3567889999999999999999999999999877 43322201111 4567764334578887544443322221
Q ss_pred CCCCcCeEeeccccccccCc--cCCCCCCcCceeee-eeeeeeEEEEecCCcchHHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEA--GSHGRDTLGIFRVH-QFEKVEQFCITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~--~~~G~~~~GL~R~~-qF~k~e~~~f~~~e~~~s~~~~~~~~~~ 311 (447)
+ -|.|+|++++|||+|. ...| |-+ ||+|.|.+..-.+ .++.....+.++..
T Consensus 86 ~---g~~rvf~ig~~FR~E~pq~~~~-------RH~~EFtqle~e~~~~~-~~~l~~~~e~l~~~ 139 (294)
T 1nnh_A 86 M---GLKKIFVLSPNIRLESRQKDDG-------RHAYEFTQLDFEVERAK-MEDIMRLIERLVYG 139 (294)
T ss_dssp T---TCCEEEEEEEEECCCCGGGCSS-------SCCSEEEEEEEEEETCC-HHHHHHHHHHHHHH
T ss_pred c---CccceEEEEccEeCCCCCCCCC-------ccccceeEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 1 2679999999999995 3112 444 9999999876554 22355555555543
No 43
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.21 E-value=2.9e-05 Score=77.74 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHCCCeEecCCccCcHHH-HHHhCCcCCC-----cCccEEEecC-C-----------CccccccCCChhH
Q 043456 179 ALINFGLDFLEKKSYTLLHTPFFMRKEV-MAKCAQLAQF-----DEELYKVTGE-G-----------DDKYLIATAEQPL 240 (447)
Q Consensus 179 aL~~~~~~~~~~~G~~~v~~P~l~~~~~-~~~~G~~~~~-----~~~lf~i~~~-~-----------~~~~L~pTsE~~l 240 (447)
.+++-+++.+...||++|..|.+.+... ++.-+ ++.. ..+.|.+.+. . +..+|+.+-...+
T Consensus 105 ~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~-~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 105 LMERELVEIFRALGYQAVEGPEVESEFFNFDALN-IPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTT-CCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHCCCEEEECcchhcchhHHHhhC-CCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 3455566778889999999998866532 22322 2211 1234556532 1 4567888555555
Q ss_pred HHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc-
Q 043456 241 CAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML- 319 (447)
Q Consensus 241 ~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L- 319 (447)
...... ...|++++++|+|||+|.. +.. ...||+++|.+....+-. |..+....+.+++.|
T Consensus 184 lr~l~~-----~~~piriFEiGrVFR~d~~----d~t---H~pEF~qlegl~~g~~v~------f~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 184 VRYMVA-----HTPPFRIVVPGRVFRFEQT----DAT---HEAVFHQLEGLVVGEGIA------MAHLKGAIYELAQALF 245 (350)
T ss_dssp HHHHHH-----CCSSEEEEEEEEEECCCCC----CSS---CCSEEEEEEEEEEETTCC------HHHHHHHHHHHHHHHS
T ss_pred HHHHHh-----cCCCeeEEEeeeEEECCCC----CCC---CCChhHEEEEEEECCCCC------HHHHHHHHHHHHHhhc
Confidence 554443 4679999999999998742 111 347999999998876433 667777888888887
Q ss_pred CCc--EEEEEecCCCCCcccccccceeeeecCCCceeeEEEec
Q 043456 320 KIP--YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCS 360 (447)
Q Consensus 320 gl~--yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~s 360 (447)
|++ ++.. ++..-...-+.+.| +++...++|.||+.|.
T Consensus 246 G~~~~~r~r--ps~fPft~Ps~e~~--i~~~~~g~w~eIg~~G 284 (350)
T 1b7y_A 246 GPDSKVRFQ--PVYFPFVEPGAQFA--VWWPEGGKWLELGGAG 284 (350)
T ss_dssp CSSCCEEEE--ECCBTTEEEEEEEE--EEETTTTEEEEEEEEE
T ss_pred CCCceEEEe--cCCCCCCCCccEEE--EEEEeCCCeEEEEEEE
Confidence 864 4432 22211111223333 3432234689998886
No 44
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.16 E-value=7.7e-06 Score=84.23 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++...+++.+++.+.+.||.+|.||.|... .++ -..++|.+.--+..++|.-+.|..+-.+...
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~----~~e----~~~~~f~~~~~~~~~~L~~Spql~~~~~~~g----- 198 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIAS----ATE----GGAQLFPVIYFGKEAFLAQSPQLYKELMAGV----- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CSS----TTCCCCEEEETTEEEEECSCCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEee----CCC----CCceeEEEecCCceEEecCCcHHHHHHHHhC-----
Confidence 456788899999999999999999999999865 121 2236777754456789964444432222221
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeee-eeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVH-QFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~-qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
+-|+|++++|||+|-...| |-. ||+|.|.+..-.+ .++..+..+.++.
T Consensus 199 ---~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~ 247 (429)
T 1wyd_A 199 ---VERVFEVAPAWRAEESDTP-------FHLAEFISMDVEMAFAD-YNDVMQLLEKILH 247 (429)
T ss_dssp ---HSEEEEEEEEECCCCCCSS-------SCCSEEEEEEEEEETCC-HHHHHHHHHHHHH
T ss_pred ---cCceEEEcccccccCCccc-------cccceeeEeeeeecCCC-HHHHHHHHHHHHH
Confidence 6799999999999954222 444 9999999866554 2235555555554
No 45
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.12 E-value=5e-06 Score=83.26 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC------CCccccccCCChhHHHHhh
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE------GDDKYLIATAEQPLCAYHI 245 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~------~~~~~L~pTsE~~l~~l~~ 245 (447)
.-.+++..+++.+++.+.+.||.+|.||.|.+.. .+| -....|.+.-- +.++||.-+.|..+--++.
T Consensus 34 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~---~~~----a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT---VTD----IHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC---CCC----TTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC---CCC----CccceEEEEecCcccccCCCEeecCCHHHHHHHHHH
Confidence 5678899999999999999999999999998654 121 11234444311 1467877655544332222
Q ss_pred ccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHH
Q 043456 246 DDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNS 312 (447)
Q Consensus 246 ~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~ 312 (447)
.- + =|+|++++|||+|-. +--|+.||+|.|.+.--.+ .++.++..+.++...
T Consensus 107 ~g------~-~rvyqIg~~FR~E~~-------~~rH~pEFt~lE~e~af~d-~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 107 AG------C-GPVFQLCRSFRNEEM-------GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQV 158 (345)
T ss_dssp TT------C-CSEEEEEEEECCCCC-------BTTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHH
T ss_pred cC------C-CcEEEEEcceeCCCC-------cccccchhheeeeeeeCCC-HHHHHHHHHHHHHHH
Confidence 21 1 189999999999954 1238899999999843332 223666666666543
No 46
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.11 E-value=1e-05 Score=84.71 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++...+++.+++.+.+.||.+|.||.|.... || -+.++|.+.-.+..+||+-+.|..+-.+...
T Consensus 176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~----~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~----- 242 (487)
T 1eov_A 176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SE----GGSSVFEVTYFKGKAYLAQSPQFNKQQLIVA----- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SS----SSSCCCEEEETTEEEEECSCTHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CC----CCcccceeccCCccEEcccChHHHHHHHHhc-----
Confidence 5668889999999999999999999999998743 22 1235787765456889985555533111111
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeee-eeeeeeEE-EEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVH-QFEKVEQF-CITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~-qF~k~e~~-~f~~~e~~~s~~~~~~~~~ 310 (447)
-+-|+|++++|||+|-...+ |-. ||+|.|.+ +|..+.+ +.++..+.++.
T Consensus 243 --g~~rvy~ig~~FR~E~~~~~-------Rh~pEFt~le~e~af~~~~~-dlm~l~E~ll~ 293 (487)
T 1eov_A 243 --DFERVYEIGPVFRAENSNTH-------RHMTEFTGLDMEMAFEEHYH-EVLDTLSELFV 293 (487)
T ss_dssp --TCCEEEEEEEEECCCCCCCT-------TCCSEEEEEEEEEECSSCTH-HHHHHHHHHHH
T ss_pred --CCCceEEEeccEecCCCCCC-------ccchhhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence 14599999999999964222 555 99999996 4765422 36666666654
No 47
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.09 E-value=5.7e-05 Score=78.82 Aligned_cols=196 Identities=10% Similarity=0.059 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHCCCeEecC-CccCcHHHHHHhCCcCCC-----cCccEEEecCC------------------------
Q 043456 178 QALINFGLDFLEKKSYTLLHT-PFFMRKEVMAKCAQLAQF-----DEELYKVTGEG------------------------ 227 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~-P~l~~~~~~~~~G~~~~~-----~~~lf~i~~~~------------------------ 227 (447)
..+.+-+++.+...||++|.+ |.+.....-...=.+|.. ..+.|.|.+..
T Consensus 228 ~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~s 307 (508)
T 3l4g_A 228 LKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGS 307 (508)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccCC
Confidence 455666777788899999875 665443322111122211 12335554310
Q ss_pred ------------CccccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEec
Q 043456 228 ------------DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 (447)
Q Consensus 228 ------------~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~ 295 (447)
+...|+++.-..+...+..........|+|++++|+|||+|... -.++.+|.++|.+....
T Consensus 308 ~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~D-------atHlpeFhQlegl~~~~ 380 (508)
T 3l4g_A 308 QGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLD-------ATHLAEFHQIEGVVADH 380 (508)
T ss_dssp CCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCC-------SSSCSEEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCC-------CCcCCeEEEEEEEEECC
Confidence 24678874444444444332222356899999999999998632 12678899999987655
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEE
Q 043456 296 PNGNDSWDMHEEMIKNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRY 374 (447)
Q Consensus 296 ~e~~~s~~~~~~~~~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y 374 (447)
+-. |..+....+.+++.||+. +|.. ++-.-.. .....+.++.++.++|.||+.|.-.----.+.++|
T Consensus 381 ~v~------f~dLKg~Le~~l~~lG~~~~rfr--ps~fPft--ePS~ev~i~~~G~~~W~EIGg~G~vhP~VL~~~Gi-- 448 (508)
T 3l4g_A 381 GLT------LGHLMGVLREFFTKLGITQLRFK--PAYNPYT--EPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGL-- 448 (508)
T ss_dssp SCC------HHHHHHHHHHHHHTTTCCCCEEE--ECCCTTC--SSEEEEEECCSTTSSCEEEEEEECCCHHHHGGGTC--
T ss_pred CCC------HHHHHHHHHHHHHHcCCcceEee--ccCCCCC--CCeEEEEEEECCccceEEEEeeeeEcHHHHHHCCC--
Confidence 433 677788888899999983 5522 2211110 11222344556666899998876432112355666
Q ss_pred eccCCCCCceeEEEeecccccchhHHHH
Q 043456 375 GQKKSNEQTKQYVHLLNSTLTATERTIC 402 (447)
Q Consensus 375 ~~~~~~~~~~~~~htlngt~~ai~Rll~ 402 (447)
. +..+.| +.|++++|+..
T Consensus 449 -p----e~~~v~-----AfgLgLeRLam 466 (508)
T 3l4g_A 449 -P----ENVSVI-----AWGLSLERPTM 466 (508)
T ss_dssp -C----TTEEEE-----EEEEESHHHHT
T ss_pred -C----CCceEE-----EEEecHHHHHH
Confidence 1 111222 45778999863
No 48
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.06 E-value=1.5e-05 Score=82.27 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++...+++.+++.+.+.||.+|.||.|... .+ .-..++|.+.--+..++|+ +|-+-+..++..
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~----~~----e~~~~~f~~~~~~~~~~Lr-~Spel~~~~~~~----- 198 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG----AV----EGGATLFKLKYFDKYAYLS-QSAQLYLEAAIF----- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC----CS----SCGGGCCEEEETTEEEEEC-SCSHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee----cC----CCCceeEEEeecCCcEEec-cChHHHHHHHhc-----
Confidence 456788899999999999999999999999855 11 1234677775445678999 444433222211
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeee-eeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVH-QFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~-qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
-|.|+|++++|||+|-...| |-. ||+|.|.+..-.+ .++.....+.++.
T Consensus 199 --g~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~ 248 (434)
T 1x54_A 199 --GLEKVWSLTPSFRAEKSRTR-------RHLTEFWHLELEAAWMD-LWDIMKVEEELVS 248 (434)
T ss_dssp --HHSEEEEEEEEECCCCCCCS-------SCCSEEEEEEEEEETCC-HHHHHHHHHHHHH
T ss_pred --CccceEEEecceecCCCCCc-------ccccEEEEeeEEEcCCC-HHHHHHHHHHHHH
Confidence 27799999999999953222 444 9999999876554 2235555555554
No 49
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=97.99 E-value=2.4e-05 Score=81.85 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhcccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
.-.++...+++.+++.+.+.||.+|.||.|... .+|- ..++|.+..+ +.++||+ +|-+-+..++ +.
T Consensus 172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~----~~Ga----~a~~F~~~~~~~~~~~yLr-~SpqLylk~l---~v 239 (493)
T 3a74_A 172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAV----AGGA----AARPFITHHNALDMTLYMR-IAIELHLKRL---IV 239 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSS----SSCCCEEEETTTTEEEEEC-SCSHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEec----CCCC----cccceEecccCCCceeEEe-cCHHHHHHHH---hh
Confidence 456788999999999999999999999999854 2231 2356766422 5678998 4444222211 11
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
+ -.-|+|++++|||+|-. ++ -|..||+|.|.+..-.+ .++.++..+.++.
T Consensus 240 ~---G~~rVyeig~~FR~E~~----~~---rH~pEFT~lE~e~af~d-~~dlm~l~E~ll~ 289 (493)
T 3a74_A 240 G---GLEKVYEIGRVFRNEGI----ST---RHNPEFTMLELYEAYAD-FRDIMKLTENLIA 289 (493)
T ss_dssp T---TCCEEEEEEEEECCCCC----BT---TBCSEEEEEEEEEETCC-HHHHHHHHHHHHH
T ss_pred c---ccCceEEECccccCCCC----Cc---ccCCceeEEEEEecCCC-HHHHHHHHHHHHH
Confidence 1 14589999999999953 22 48999999999854433 2236666666554
No 50
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=97.98 E-value=1.4e-05 Score=82.22 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++...+++.+++.+.+.||.+|.||.|.... +| -..++|.+.--+..++|.-+.|..+ .++..
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~----~e----~~~~~f~~~~~g~~~~L~~Spel~~-~~l~~----- 188 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG----AE----GGSGLFGVDYFEKRAYLAQSPQLYK-QIMVG----- 188 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHH-HHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC----CC----CCceeEEEeeCCCcEEeeeCHHHHH-HHHhh-----
Confidence 4567888999999999999999999999998651 21 1124666643345789964444332 33321
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeee-eeeeeeEEEEecCCcchHHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVH-QFEKVEQFCITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~-qF~k~e~~~f~~~e~~~s~~~~~~~~~~ 311 (447)
- +-|+|++++|||+|-...| |-. ||+|.|.+..-.++.++.++..+.++..
T Consensus 189 -g-~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~ 240 (422)
T 1n9w_A 189 -V-FERVYEVAPVWRMEEHHTS-------RHLNEYLSLDVEMGFIADEEDLMRLEEALLAE 240 (422)
T ss_dssp -H-HSEEEEEEEC--------------------CCEEEEEEEESCSSHHHHHHHHHHHHHH
T ss_pred -C-CCceeEEeCceECCCCCCC-------cccceeEEeeeeeeCCCCHHHHHHHHHHHHHH
Confidence 1 3699999999999954222 444 9999999866552233466655555543
No 51
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.91 E-value=3.8e-05 Score=80.57 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhcccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
.-.++...+++.+++.+.+.||.+|.||.|... .+|- ....|.+..+ +.++||+-+.|..+=.+...
T Consensus 181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~----~~Ga----~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~--- 249 (504)
T 1e1o_A 181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA----SARPFITHHNALDLDMYLRIAPELYLKRLVVG--- 249 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESS----CCSS----CCCCCEEEETTTTEEEEECSCSHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEec----CCCC----cccceEeccCCCCceEEeccCHHHHHHHHhhc---
Confidence 456788899999999999999999999999844 2221 1245655422 56789885444322111111
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~ 311 (447)
-.=|+|++++|||+|-. ++ -|..||+|.|.+..-.+ .++.++..+.++..
T Consensus 250 ----G~~rVyeIg~~FR~E~~----~~---rH~pEFt~lE~e~af~d-~~dlm~l~E~li~~ 299 (504)
T 1e1o_A 250 ----GFERVFEINRNFRNEGI----SV---RHNPEFTMMELYMAYAD-YHDLIELTESLFRT 299 (504)
T ss_dssp ----TCCEEEEEEEEECCCCC----CC----CCSEEEEEEEEEESCC-HHHHHHHHHHHHHH
T ss_pred ----CCCcEEEEcccccCCCC----Cc---cccCceeeeeeeecCCC-HHHHHHHHHHHHHH
Confidence 12489999999999953 22 48999999999854333 22366666665543
No 52
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.84 E-value=7.3e-05 Score=77.10 Aligned_cols=119 Identities=12% Similarity=0.165 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++..++++.+++.+.+.||.+|.||.|.... ..| +.++|.+.--+..+||.-+.|..+=.+...-
T Consensus 135 ~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~---~eg-----~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g---- 202 (438)
T 3nem_A 135 AIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATA---TEG-----GTELFPMKYFEEDAFLAQSPQLYKQIMMASG---- 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC---SSC-----SSSCCEEEETTEEEEECSCSHHHHHHGGGTT----
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCC---CCC-----CccceeEeeCCccEEEecChHHHHHHHHhcC----
Confidence 4567889999999999999999999999998653 112 2345666543567898766655332222111
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~ 311 (447)
-=|+|++++|||+|-...+ + ..-||+|.|.+.--.+..++.++..+.++..
T Consensus 203 ---~~rvf~i~~~FR~E~~~t~---R---H~pEFt~le~e~a~~~~~~d~m~~~E~li~~ 253 (438)
T 3nem_A 203 ---LDRVYEIAPIFRAEEHNTT---R---HLNEAWSIDSEMAFIEDEEEVMSFLERLVAH 253 (438)
T ss_dssp ---CCEEEEEEEEECCCSSCCT---T---CCSEEEEEEEEEESCSSHHHHHHHHHHHHHH
T ss_pred ---CCceEEEcceEECCCCCCc---c---cccceeeeeeeeccCccHHHHHHHHHHHHHH
Confidence 2389999999999954211 1 2359999999854333122366666666553
No 53
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.83 E-value=0.00038 Score=73.04 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=84.5
Q ss_pred cccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHH
Q 043456 230 KYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMI 309 (447)
Q Consensus 230 ~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~ 309 (447)
..|+++--.++....+. ..+....|++++++|+|||.+.. +..+ +.+||.+.+......+.. |..+.
T Consensus 181 svLRTsLlPgLL~~lr~-N~~r~~~pvrLFEIG~VFr~d~~----~d~t--h~~Ef~qLagli~G~~vd------f~dLK 247 (534)
T 2du3_A 181 LTLRSHMTTGWFITLSH-IADKLPLPIKLFSIDRCFRREQG----EDAT--RLYTYFSASCVLVDEELS------VDDGK 247 (534)
T ss_dssp EEECSSHHHHHHHHHHT-TTTTSCSSEEEEEEEEEECCCTT----CSSS--CCSEEEEEEEEEECSSCC------HHHHH
T ss_pred cccCccchhhHHHHHHH-HHhCCCCCeeEEEEeeEEecCcc----cccc--ccceeeEEEEEEECCCCC------HHHHH
Confidence 46666543333222221 12445789999999999997631 0011 448999999887665433 56788
Q ss_pred HHHHHHHHHcCCc-EEEEEecCCCCC--cccccccceeeeecCC--------CceeeEEEecccchhhhhhcccEEeccC
Q 043456 310 KNSEEFYQMLKIP-YQVVAIVSGALN--DAAAKKLDLEAWFPAS--------QTYRELVSCSNCTDYQSRRLEIRYGQKK 378 (447)
Q Consensus 310 ~~~~~i~~~Lgl~-yr~v~~~t~dlg--~~a~~~~diE~w~p~~--------~~~~ev~s~sn~~D~qs~rl~i~y~~~~ 378 (447)
...+.+++.||+. ++... +..-. .--.....+.++.|.. ++|.||+.|...----.+.+++.+
T Consensus 248 gilE~LL~~LGi~~~r~~~--~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~~---- 321 (534)
T 2du3_A 248 AVAEALLRQFGFENFRFRK--DEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPY---- 321 (534)
T ss_dssp HHHHHHHGGGTCCEEEEEE--CTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCS----
T ss_pred HHHHHHHHHcCCCeEEEEE--CCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCCC----
Confidence 8889999999995 66543 21110 1112234555555432 368888887643211235566621
Q ss_pred CCCCceeEEEeecccccchhHHHHH
Q 043456 379 SNEQTKQYVHLLNSTLTATERTICC 403 (447)
Q Consensus 379 ~~~~~~~~~htlngt~~ai~Rll~a 403 (447)
+.+ ..+++++|+...
T Consensus 322 -----~v~-----afeLgLErLaMl 336 (534)
T 2du3_A 322 -----PVM-----NLGLGVERLAMI 336 (534)
T ss_dssp -----CEE-----EEEEEHHHHHHH
T ss_pred -----cEE-----EEEecHHHHHHh
Confidence 223 346779998654
No 54
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.82 E-value=7.1e-05 Score=78.94 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++..++++.+++.+.+.||.+|.||.|..... + |.. +.|.+.--+..+||.-+.|..+-.++..-
T Consensus 242 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~-e--gga-----~~F~v~~~~~~~yL~~Spql~~k~ll~~g---- 309 (548)
T 3i7f_A 242 AIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS-E--GGS-----NIFEVKYFDRKAYLAQSPQLYKQMAIMGD---- 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHHHHHHHHTTT----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC-C--CCc-----ceeEEecCCCceEeccCHHHHHHHHHhcC----
Confidence 44678889999999999999999999999998752 2 222 23443322346788876655433222211
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecC-CcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSP-NGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~-e~~~s~~~~~~~~~ 310 (447)
-=|+|++++|||+|-. .+ --..-||+|.|.+ +|..+ ++ .++..+.++.
T Consensus 310 ---~~rVfeI~~~FR~E~~-~t-----~RHl~EFtmlE~e~af~~d~~d--~m~~~E~li~ 359 (548)
T 3i7f_A 310 ---FRKVFEVGPVFRAENS-NT-----RRHLTEFEGLDIEMEIVENYHE--CIDVMEKLFT 359 (548)
T ss_dssp ---CCEEEEEEEECCCSCC-CS-----SSCCSCEEEEEEEEECSSCTHH--HHHHHHHHHH
T ss_pred ---cCcEEEEeeeEecCCC-CC-----CCcchhhhchhhhhhhhcCHHH--HHHHHHHHHH
Confidence 1479999999999953 11 1134599999998 57643 33 6666555554
No 55
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=97.81 E-value=4.1e-05 Score=78.97 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.+++..+++.+++.+.+.||.+|.||.|..... .|. .++|.++--+..+||.-+.+.-+=.+.. .
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG~-----~~~F~~~~~g~~~~L~~SpqLylq~l~~----g- 196 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EGG-----STLFNLDYFGEQSFLTQSSQLYLETCIP----T- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SCT-----TSCCEEEETTEEEEECSCSHHHHHHHHH----H-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CCc-----hhceeeccCCcccccCCChHHHHHHhhh----c-
Confidence 46688999999999999999999999999976542 232 2356665334577887555532222211 1
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~ 311 (447)
+ =|+|++++|||+|-. .+ . -..-||+|.|.+.--.+ .++.++..++++..
T Consensus 197 --~-~rvfeIg~~FR~E~~-~t-~----RH~~EFT~lE~e~af~d-~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 197 --L-GDVFCIAQSYRAEKS-RT-R----RHLAEYAHVEAECPFIT-LDDLMEKIEELVCD 246 (435)
T ss_dssp --H-CSEEEEEEEECCCSS-CC-T----TCCSEEEEEEEEEESCC-HHHHHHHHHHHHHH
T ss_pred --c-CceEEEecceecCCC-Cc-c----ccccceeEEEEEEecCC-HHHHHHHHHHHHHH
Confidence 1 389999999999953 22 1 12349999999853333 22466666666643
No 56
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.79 E-value=4.5e-05 Score=80.33 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhcccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWI 249 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~ 249 (447)
.-.++...+++.+++.+.+.||.+|.||.|... .+|- ....|.+..+ +.++||.-+.|..+=.+...-
T Consensus 174 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~----~gGa----~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g-- 243 (521)
T 3bju_A 174 QKFIIRSKIITYIRSFLDELGFLEIETPMMNII----PGGA----VAKPFITYHNELDMNLYMRIAPELYHKMLVVGG-- 243 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSS----SCCCCEEEETTTTEEEEECSCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCceeecc----CCCc----cccceeeecccCCcceEeeCCHHHHHHHHHhcC--
Confidence 456778889999999999999999999999853 2331 1234544322 457899876665442222211
Q ss_pred CCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHH
Q 043456 250 HPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 250 s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~ 311 (447)
+ =|+|++++|||+|-. ++ -+.-||+|.|.+.--.+ .++.++..+.++..
T Consensus 244 ----~-~rVyeig~~FR~E~~----~t---rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~ 292 (521)
T 3bju_A 244 ----I-DRVYEIGRQFRNEGI----DL---THNPEFTTCEFYMAYAD-YHDLMEITEKMVSG 292 (521)
T ss_dssp ----C-CEEEEEEEEECCSCC----BT---TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHH
T ss_pred ----c-CceEEEEcceeCCCC----CC---ccchhhhhhhhhhhcCC-HHHHHHHHHHHHHH
Confidence 1 279999999999943 33 37889999999843332 22366666666653
No 57
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.79 E-value=0.00035 Score=68.27 Aligned_cols=125 Identities=11% Similarity=0.136 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHH-HHHhCCcCCCc-----CccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEV-MAKCAQLAQFD-----EELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~-~~~~G~~~~~~-----~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
..+.+.+++.+...||+||.+|.+.+... +..-+ ++.-. .+.|.+. +..+|+++-...+....+...
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~-~~~~~par~~~d~~~l~---e~~vLRtsl~p~ll~~l~~N~--- 128 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALN-LPKSHPARDMQDSFYIT---DEILMRTHTSPVQARTMEKRN--- 128 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGT-CCTTCGGGCTTTSCBSS---SSEEECSSSHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhC-CCCCccccccCCcEEEc---CcceeeccCHHHHHHHHHhcC---
Confidence 44566667778889999998887766532 22322 22111 1134453 356899977777766555443
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc-CCc
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML-KIP 322 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L-gl~ 322 (447)
...|++++++|+|||++.. +.. ...||++.+.+..-.+-. |..+....+.+++.| |++
T Consensus 129 ~~~~~riFEiG~Vfr~d~~----d~~---h~~Ef~~Le~~~~g~~~d------f~dlKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 129 GQGPVKIICPGKVYRRDSD----DAT---HSHQFTQIEGLVVDKNIK------MSDLKGTLELVAKKLFGAD 187 (294)
T ss_dssp TCSCEEEEEEEEEECCCCC----BTT---BCSEEEEEEEEEEESSCC------HHHHHHHHHHHHHHHHCTT
T ss_pred CCCCccEEEEcCEEecCCC----CCC---CCChhhEEEEEEECCCCC------HHHHHHHHHHHHHHHhCCC
Confidence 4689999999999997631 111 235999999998765433 667777888888887 874
No 58
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.74 E-value=0.00013 Score=77.80 Aligned_cols=116 Identities=15% Similarity=0.274 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccc-cccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKY-LIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~-L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++..+++.+++.+.+.||.+|.||.|.... -+ | . .+ |.+..+ ..++| |. +|-.-+-.+..-.-
T Consensus 136 ~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~-~e--G-A----r~-F~v~~~~~~~~~y~L~-qSPQl~kq~Lmv~G 205 (585)
T 1c0a_A 136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKAT-PE--G-A----RD-YLVPSRVHKGKFYALP-QSPQLFKQLLMMSG 205 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC-SS--S-S----CC-CEEECSSSTTCEEECC-SCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCC-CC--C-C----cc-ceecccccCCceEeCc-cCHHHHHHHHHhcC
Confidence 4567889999999999999999999999998543 11 2 1 12 555432 12344 55 44443333211111
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIKNS 312 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~~~ 312 (447)
+ =|+||+++|||+|-. .+ -|.-||+|.|++ +|+.-+ +.++..+.++...
T Consensus 206 -----~-~rvfqI~~~FR~E~~----~t---~r~pEFT~lE~e~af~d~~--dvm~~~E~li~~i 255 (585)
T 1c0a_A 206 -----F-DRYYQIVKCFRDEDL----RA---DRQPEFTQIDVETSFMTAP--QVREVMEALVRHL 255 (585)
T ss_dssp -----C-CEEEEEEEEECCCCC----BT---TBCSEEEEEEEEEESCCHH--HHHHHHHHHHHHH
T ss_pred -----C-CceEEEeceeecCCC----CC---CcCcccceeeeeecCCCHH--HHHHHHHHHHHHH
Confidence 1 279999999999954 22 266699999998 454323 3776666666543
No 59
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.70 E-value=0.00017 Score=76.87 Aligned_cols=116 Identities=20% Similarity=0.337 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccc-cccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKY-LIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~-L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++..+++.+++.+.+.||.+|.||.|..... + | . .+ |.+..+ +.++| |. +|-.-+-.+..-.-
T Consensus 142 ~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~-e--G-A----r~-F~v~~~~~~~~~y~L~-qSPQl~kq~Lmv~G 211 (580)
T 1l0w_A 142 ENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP-E--G-A----RD-FLVPYRHEPGLFYALP-QSPQLFKQMLMVAG 211 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS-S--S-S----CC-CEEECTTSTTEEEECC-SCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC-C--C-C----CC-ccccccccCCceeECc-cCHHHHHHHHHHhc
Confidence 35678899999999999999999999999985421 1 2 1 12 555432 22444 55 44443333211111
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEE-EEecCCcchHHHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNDSWDMHEEMIKNS 312 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~-~f~~~e~~~s~~~~~~~~~~~ 312 (447)
+ =|+||+++|||+|-. .+ -|.-||+|.|++ +|+.-+ +.++..+.++...
T Consensus 212 ~------~rvfqI~~~FR~E~~----~~---~r~pEFT~lE~e~af~d~~--dvm~~~E~li~~i 261 (580)
T 1l0w_A 212 L------DRYFQIARCFRDEDL----RA---DRQPDFTQLDLEMSFVEVE--DVLELNERLMAHV 261 (580)
T ss_dssp C------SEEEEEEEEECCCCC----CS---SCCSEEEEEEEEEESCCHH--HHHHHHHHHHHHH
T ss_pred c------CCeEEEeceeeCCCC----CC---CcCCCccceeeeecCCCHH--HHHHHHHHHHHHH
Confidence 1 279999999999954 12 266699999998 454323 3666666666543
No 60
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.67 E-value=0.00016 Score=77.27 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLE-KKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~-~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++.++++.+++.+. +.||.+|.||.|.... +|-.. -|.+..+ +..|||.-+.+...-.++..-
T Consensus 146 ~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~GA~-----~F~v~~~~~g~~~~L~qSpql~kq~l~v~g- 215 (617)
T 4ah6_A 146 YNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGGAK-----EFLVPSREPGKFYSLPQSPQQFKQLLMVGG- 215 (617)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSSSC-----CCEEECSSTTCEEECCSSTTHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCCCc-----CceeccccCCcccccccCHHHHHHHHHhcc-
Confidence 457888999999999996 7999999999998632 22111 2555432 456777655443322222111
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEE-EecCCcchHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNDSWDMHEEMI 309 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~-f~~~e~~~s~~~~~~~~ 309 (447)
+ =|+||+++|||+|-. .++ |+-||+|.|++. |+.-++ .++..+.++
T Consensus 216 ~------~rvfqi~~~FR~E~~----~t~---r~pEFt~lE~e~af~d~~d--~m~~~E~l~ 262 (617)
T 4ah6_A 216 L------DRYFQVARCYRDEGS----RPD---RQPEFTQIDIEMSFVDQTG--IQSLIEGLL 262 (617)
T ss_dssp C------SEEEEEEEEECCCSS----CSS---SCSEEEEEEEEEESCCHHH--HHHHHHHHH
T ss_pred c------CcEEEEEhheecccC----CCC---cCcceecceeeecCCCHHH--HHHHHHHHH
Confidence 1 289999999999953 222 688999999984 443222 444444444
No 61
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.67 E-value=8.9e-05 Score=76.84 Aligned_cols=116 Identities=13% Similarity=0.170 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecCCCccccccCCChhHHHHhhccccCC
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHP 251 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~ 251 (447)
.-.++..++++.+++.+.+.||.+|.||.|..... ++.+ ++|+++--+..+||.-+.+..+=.+...
T Consensus 154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~-eGg~-------~~f~~~~~~~~~~L~~SpqL~lq~l~~g----- 220 (456)
T 3m4p_A 154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC-EGGS-------TLFKLQYFNEPAYLTQSSQLYLESVIAS----- 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC-------C-------CCCEEEETTEEEEECSCCHHHHHTTHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC-CCcc-------ccccccccCCCcccccCHHHHHHHHHhc-----
Confidence 45788899999999999999999999999986542 2222 3455543245678876555433222211
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHH
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIK 310 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~ 310 (447)
+ =|+|++++|||+|-. .+ --..-||+|.|.+.--.+ .++.++..+.++.
T Consensus 221 --~-~rVyeig~~FR~E~~-~t-----~rH~pEFtmlE~e~af~d-~~d~m~~~E~li~ 269 (456)
T 3m4p_A 221 --L-GKSFCMLSSYRAEQS-RT-----VRHLAEYLHLEAELPFIS-FEDLLNHLEDLVC 269 (456)
T ss_dssp --H-SSEEEEEEEECCCSC-CC-----SSCCSEEEEEEEEEESCC-HHHHHHHHHHHHH
T ss_pred --c-CcEEEEEhheecCCC-CC-----CcchHHHHHhHHHHhcCC-HHHHHHHHHHHHH
Confidence 2 369999999999943 11 113349999999853333 2236666555554
No 62
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.60 E-value=0.00018 Score=75.69 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhC-CcCCCcCccEEEecC--CCccccccCCChhHHHHhhccc
Q 043456 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA-QLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDW 248 (447)
Q Consensus 172 ~ga~l~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G-~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~ 248 (447)
.-.+++.++++.+++.+.+.||.+|.||.|... .+| .. ..|..... +.++||.=+.|..+=.++..-
T Consensus 202 ~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~----~gGA~a-----~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G- 271 (529)
T 4ex5_A 202 TTFRARTKAIASIRKFMGDADFMEVETPMLHPI----PGGAAA-----KPFVTHHNALDMEMFLRIAPELYLKRLIVGG- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSSSS-----CCCEEEETTTTEEEEECSCSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc----CCCCcc-----cccccccccCCcceecccCHHHHHHHHHhcC-
Confidence 456888899999999999999999999999843 122 21 23432211 356788765554432222111
Q ss_pred cCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHH
Q 043456 249 IHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKN 311 (447)
Q Consensus 249 ~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~ 311 (447)
-=|+|++++|||+|-. ++ -+.-||+|.|.+.--.+ .++.++..+.++..
T Consensus 272 ------~~rVyeIg~~FR~E~~----~~---rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~ 320 (529)
T 4ex5_A 272 ------FERVFEINRNFRNEGV----SP---RHNPEFTMMEFYAAYTD-YRWLMDFTERLIRQ 320 (529)
T ss_dssp ------CSEEEEEEEEECCSCC----BT---TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHH
T ss_pred ------CCcEEEeehheecCCC----CC---CcccHhHhhhhhhhcCC-HHHHHHHHHHHHHH
Confidence 1379999999999953 22 47889999999853222 22366666666653
No 63
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.48 E-value=0.00046 Score=68.31 Aligned_cols=187 Identities=11% Similarity=0.117 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHCCCeEecCCccCcHH-HHHHhCCcCCCc-----CccEEEecCCCccccccCCChhHHHHhhccccCCC
Q 043456 179 ALINFGLDFLEKKSYTLLHTPFFMRKE-VMAKCAQLAQFD-----EELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPS 252 (447)
Q Consensus 179 aL~~~~~~~~~~~G~~~v~~P~l~~~~-~~~~~G~~~~~~-----~~lf~i~~~~~~~~L~pTsE~~l~~l~~~~~~s~~ 252 (447)
.+.+-+.+.+...||+++.+|.+.... .++.-. +|.-. .+.|.++ +..+|+.+--..+...+ ++.
T Consensus 111 ~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln-~p~dhpaR~~~dt~~i~---e~~vLRThtsp~~lr~l-----~~~ 181 (327)
T 3pco_A 111 RTIDRIESFFGELGFTVATGPEIEDDYHNFDALN-IPGHHPARADHDTFWFD---TTRLLRTQTSGVQIRTM-----KAQ 181 (327)
T ss_dssp HHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTT-CCSSSHHHHHTTCCBSS---SSCEECSCTHHHHHHHH-----TTC
T ss_pred HHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhC-CCCCChhhcccccEEeC---CCceecccCCHHHHHHH-----HhC
Confidence 345556667788999999999874321 111111 11100 1234443 24577774333333333 235
Q ss_pred CcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHc---CCcEEEEEec
Q 043456 253 ELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQML---KIPYQVVAIV 329 (447)
Q Consensus 253 ~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~L---gl~yr~v~~~ 329 (447)
..|++++++|+|||.+.. -..+.+|.++|.+....+-. |..+....+.+++.| ++.+|. .+
T Consensus 182 ~~pirifeiGrVyR~d~d--------~th~p~fhqlegl~v~~~v~------f~dLKg~Le~~l~~lfg~~~~vr~--rp 245 (327)
T 3pco_A 182 QPPIRIIAPGRVYRNDYD--------QTHTPMFHQMEGLIVDTNIS------FTNLKGTLHDFLRNFFEEDLQIRF--RP 245 (327)
T ss_dssp CSSCCBCCEECCBCSCCB--------TTBCSBCCEEEEEEEETTCC------HHHHHHHHHHHHHHHHCSCSEEEE--EE
T ss_pred CCCeeEEeeccEEecCCC--------cccCCcccEEEEEEECCCCC------HHHHHHHHHHHHHHHhCCCceEEE--ec
Confidence 689999999999998732 11445788898776544322 566677777777777 366553 23
Q ss_pred CCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCCCCCceeEEEeecccccchhHHHHHH
Q 043456 330 SGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCI 404 (447)
Q Consensus 330 t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~~~~~~~~~htlngt~~ai~Rll~al 404 (447)
+-.-...-+.+.|+ |+ ..+.|.||+.|.-.-=--.+.++| ++ .+|. ..+.|++++|+....
T Consensus 246 s~fPftePs~eadI--~~-~~G~w~EIgg~G~VHP~Vl~~~gi---d~------~~~~--g~AFglgleRlaml~ 306 (327)
T 3pco_A 246 SYFPFTEPSAEVDV--MG-KNGKWLEVLGCGMVHPNVLRNVGI---DP------EVYS--GFAFGMGMERLTMLR 306 (327)
T ss_dssp ECCTTEEEEEEEEE--EC-SSSCEEEEEEEEEECHHHHHTTTC---CT------TTCE--EEEEEEEHHHHHHHH
T ss_pred CcCCCCCCcEEEEE--EE-eCCCeEEEEEEEEECHHHHHHcCC---CC------ccce--EEEEEechHHHHHHH
Confidence 22211112334443 54 245699999886321011344555 11 1121 125677899986543
No 64
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.18 E-value=0.0052 Score=64.49 Aligned_cols=129 Identities=10% Similarity=0.149 Sum_probs=71.3
Q ss_pred cccccCCChhHHHHhhccccCCCCcCeEeeccccccccCcc-CCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHH
Q 043456 230 KYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAG-SHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEM 308 (447)
Q Consensus 230 ~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~-~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~ 308 (447)
.+|+++--.++....+.. ......|++++++|+|||.+.. . .+ +.+||.+++......+-. |..+
T Consensus 193 svLRTsLlPGLL~~vr~N-~~r~~~pvrlFEiGrVFr~D~~~d---~t----h~~ef~qLaglv~G~~vd------F~DL 258 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSL-IKKRKLPLKLFSIDRCFRREQRED---RS----HLMSYHSASCVVVGEDVS------VDDG 258 (549)
T ss_dssp EECCSTTHHHHHHHHHTT-TTTSCSSEEEEEEEEECCCCSSCS---SS----CCSCEEEEEEEEECTTCC------HHHH
T ss_pred cccccccchhHHHHHHHH-HhcCCCCeEEEEEeeEEecCCccc---Cc----CCCcceEEEEEEECCCCC------HHHH
Confidence 356664433332222221 2345789999999999997541 1 11 348999999987765433 6788
Q ss_pred HHHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhccc
Q 043456 309 IKNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEI 372 (447)
Q Consensus 309 ~~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i 372 (447)
....+.+++.||+. ++........-..--.++..+.++.++.++|.+|+.|.-.-=--.+.++|
T Consensus 259 KG~Le~ll~~LGi~~~rfrps~~~~p~yhPGr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gI 323 (549)
T 2du7_A 259 KVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNI 323 (549)
T ss_dssp HHHHHHHHGGGTCCCCCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCeEEEEECCCCCcccCCceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCC
Confidence 88889999999983 44332110010011112223323223333688988876321111345555
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.08 E-value=0.012 Score=62.52 Aligned_cols=130 Identities=10% Similarity=0.139 Sum_probs=72.8
Q ss_pred cccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHH
Q 043456 230 KYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMI 309 (447)
Q Consensus 230 ~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~ 309 (447)
.+|+++--.++....+.. .+....|++++++|+|||++.. .. .+ ...||.+++......+-. |..+.
T Consensus 200 sVLRTsLlPGLL~~vr~N-~~R~~~pvRLFEIGrVFR~D~~-lD-at----h~~Ef~qLeGlv~G~~vd------F~DLK 266 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDL-MNKKPLPFKLFSIDRCFRREQK-ED-KS----HLMTYHSASCAIAGEGVD------INDGK 266 (648)
T ss_dssp EEECCCTHHHHHHHHHHH-TTTSCSCEEEEEEEEEECCCSC-CC-SS----CCSEEEEEEEEEECTTCC------HHHHH
T ss_pred CcccccchhhHHHHHHHH-HhcCCCCeEEEEEeeEEecCcc-cc-cc----CCCcceEEEEEEECCCCC------HHHHH
Confidence 356664433332222211 2345789999999999997531 00 11 237999999887765433 67888
Q ss_pred HHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhccc
Q 043456 310 KNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEI 372 (447)
Q Consensus 310 ~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i 372 (447)
...+.+++.||+. ++........-..--.+...+.++.|+.++|.+|+.|.-.-=--.+.++|
T Consensus 267 GvLE~LL~~LGi~~vrfrpse~~~p~yhPGreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GI 330 (648)
T 2odr_B 267 AIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGI 330 (648)
T ss_dssp HHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCcCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCC
Confidence 8889999999984 66543110111111112333433334333688988876321112345665
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.06 E-value=0.012 Score=62.43 Aligned_cols=130 Identities=10% Similarity=0.139 Sum_probs=72.8
Q ss_pred cccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHH
Q 043456 230 KYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMI 309 (447)
Q Consensus 230 ~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~ 309 (447)
.+|+++--.++....+.. .+....|++++++|+|||++.. .. .+ ...||.+++......+-. |..+.
T Consensus 200 sVLRTSLlPGLL~~lr~N-~~R~~~pvRLFEIGrVFR~D~~-lD-at----h~~Ef~qLeGlv~G~~vd------F~DLK 266 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDL-MNKKPLPFKLFSIDRCFRREQK-ED-KS----HLMTYHSASCAIAGEGVD------INDGK 266 (665)
T ss_dssp EEECCCTHHHHHHHHHHH-TTTSCSCEEEEEEEEEECCCSC-CC-SS----CCSEEEEEEEEEECTTCC------HHHHH
T ss_pred CcccccchhhHHHHHHHH-HhcCCCCeEEEEEeeEEecCcc-cc-cc----CCCcceEEEEEEECCCCC------HHHHH
Confidence 356664433332222211 2345789999999999997531 00 11 237999999887765433 67888
Q ss_pred HHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhccc
Q 043456 310 KNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEI 372 (447)
Q Consensus 310 ~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i 372 (447)
...+.+++.||+. ++........-..--.+...+.++.|+.++|.+|+.|.-.-=--.+.++|
T Consensus 267 GvLE~LL~~LGi~~vrfrpse~~~p~yhPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GI 330 (665)
T 2odr_A 267 AIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGI 330 (665)
T ss_dssp HHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCC
Confidence 8889999999984 66543110111111112333433334333688988876321112345665
No 67
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.05 E-value=0.013 Score=62.34 Aligned_cols=130 Identities=10% Similarity=0.139 Sum_probs=72.6
Q ss_pred cccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHH
Q 043456 230 KYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMI 309 (447)
Q Consensus 230 ~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~ 309 (447)
.+|+++--.++....+.. .+....|++++++|+|||++.. .. .+ ...||.+++......+-. |..+.
T Consensus 200 sVLRTSLlPGLL~~vr~N-~~R~~~pvRLFEIGrVFR~D~~-lD-at----h~~Ef~qLeGlv~G~~vD------F~DLK 266 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDL-MNKKPLPFKLFSIDRCFRREQK-ED-KS----HLMTYHSASCAIAGEGVD------INDGK 266 (685)
T ss_dssp EEECCCTHHHHHHHHHHH-TTTSCSCEEEEEEEEEECCCSC-CC-SS----CCSEEEEEEEEEECTTCC------HHHHH
T ss_pred CcccccchhhHHHHHHHH-HhCCCCCeEEEEeccEEecCcc-cc-cc----CCCcceEEEEEEECCCCC------HHHHH
Confidence 356664433332222211 2345789999999999997531 00 11 237999999987765433 67888
Q ss_pred HHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhccc
Q 043456 310 KNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEI 372 (447)
Q Consensus 310 ~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i 372 (447)
...+.+++.||+. ++........-..--.+...+.++.|+.++|.+|+.|.-.-=--.+.++|
T Consensus 267 GvLE~LL~~LGi~~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GI 330 (685)
T 2odr_D 267 AIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGI 330 (685)
T ss_dssp HHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCC
Confidence 8889999999984 66543110111111112333433334333688888876321111345555
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.99 E-value=0.014 Score=62.30 Aligned_cols=130 Identities=10% Similarity=0.139 Sum_probs=72.9
Q ss_pred cccccCCChhHHHHhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHH
Q 043456 230 KYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMI 309 (447)
Q Consensus 230 ~~L~pTsE~~l~~l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~ 309 (447)
.+|+++--.++....+.. .+....|++++++|+|||++.. .. .+ ...||.+++......+-. |..+.
T Consensus 200 sVLRTSLlPGLL~~vr~N-~~R~~~pvRLFEIGrVFR~D~~-lD-at----h~~EfhqLeGlv~G~~vD------F~DLK 266 (701)
T 2odr_C 200 LTLRSHMTSGWFLTVSDL-MNKKPLPFKLFSIDRCFRREQK-ED-KS----HLMTYHSASCAIAGEGVD------INDGK 266 (701)
T ss_dssp EEECCCTHHHHHHHHHHH-TTTSCSCEEEEEEEEEECCCSC-CC-SS----CCSEEEEEEEEEECTTCC------HHHHH
T ss_pred CcccccchhhHHHHHHHH-HhCCCCCeEEEEEeeEEccCcc-cc-cc----CCCcceEEEEEEECCCCC------HHHHH
Confidence 356664433332222211 2345789999999999997531 00 11 237999999887765433 67888
Q ss_pred HHHHHHHHHcCCc-EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchhhhhhccc
Q 043456 310 KNSEEFYQMLKIP-YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEI 372 (447)
Q Consensus 310 ~~~~~i~~~Lgl~-yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i 372 (447)
...+.+++.||+. ++........-..--.+...|.++.|+.++|.+|+.|.-.-=--.+.++|
T Consensus 267 GvLE~LL~~LGi~~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GI 330 (701)
T 2odr_C 267 AIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGI 330 (701)
T ss_dssp HHHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCC
Confidence 8889999999984 66543110111111112333433334333688888876321111345565
No 69
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.17 E-value=0.035 Score=59.29 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHH-HHHhCCcCCCcCccEEEecC-C-CccccccCCChhHHHHhhccccCCCCc
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEV-MAKCAQLAQFDEELYKVTGE-G-DDKYLIATAEQPLCAYHIDDWIHPSEL 254 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~-~~~~G~~~~~~~~lf~i~~~-~-~~~~L~pTsE~~l~~l~~~~~~s~~~L 254 (447)
+.+.+.+++.+...||+|+.++.++..+. +..-+...+ ..+.+.+.+. . +.-+|++|-=.++....+... . +..
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~-~-~~~ 470 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR-K-MPL 470 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTT-T-SCS
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHh-c-CCC
Confidence 44566677888999999999999999874 333332211 1234455432 2 334788876666654443332 2 246
Q ss_pred CeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 255 PIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 255 Plrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
|++++++|++||.+... + . ..+|+.+........... |..+....+.+++.||++
T Consensus 471 ~vrlFEiG~Vf~~d~~~---~-~---~~~e~~~la~~~~g~~~~------f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 471 PLKLFEISDIVIKDSNT---D-V---GAKNYRHLCAVYYNKNPG------FEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp CEEEEEEEEEEEECTTS---T-T---SEEEEEEEEEEEESSSCC------HHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEeeeEEecCCcc---c-c---CCccccEEEEEEECCCCC------HHHHHHHHHHHHHHcCCC
Confidence 99999999999976421 1 1 246777777654433222 677788888999999996
No 70
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=95.32 E-value=0.12 Score=52.74 Aligned_cols=191 Identities=8% Similarity=0.045 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHC----CCeEecC-CccCcHH-HHHHhCCcCC----CcCccEEEecCCCcccccc-CCChhHHH
Q 043456 174 VRLNQALINFGLDFLEKK----SYTLLHT-PFFMRKE-VMAKCAQLAQ----FDEELYKVTGEGDDKYLIA-TAEQPLCA 242 (447)
Q Consensus 174 a~l~~aL~~~~~~~~~~~----G~~~v~~-P~l~~~~-~~~~~G~~~~----~~~~lf~i~~~~~~~~L~p-TsE~~l~~ 242 (447)
..+.+.+.+++....... ||+++.+ |.++... .++.-+..++ -..+.|.++ +...|+. |+-+. +.
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~---~~~vLRThts~~~-~~ 126 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN---RTHMLRAHTSAHQ-WD 126 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS---SSEEECSSGGGGH-HH
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEec---CCeEEcCCCcHHH-HH
Confidence 445555555555443222 8999998 6666544 3333332111 113445553 2456666 44333 33
Q ss_pred HhhccccCCCCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEe------------------------cCCc
Q 043456 243 YHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCIT------------------------SPNG 298 (447)
Q Consensus 243 l~~~~~~s~~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~------------------------~~e~ 298 (447)
+++.. .| ++..+|.|||++.-.. ....+|.++|...+- .+.+
T Consensus 127 ~l~~~------~~-k~~~~G~VyR~D~~da-------~h~n~fhQ~egv~lfe~g~~f~~~~~~~~la~~~~g~~~~~~~ 192 (415)
T 3cmq_A 127 LLHAG------LD-AFLVVGDVYRRDQIDS-------QHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSAHKQ 192 (415)
T ss_dssp HHHTT------CS-EEEEEEEEECCCCCBT-------TBCSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCCCSSCC
T ss_pred HHHHC------CC-CEEEeeeEEeccchhh-------hhhHHhcCCCcEEEEeccceeccccccceEEEEEecCcccccc
Confidence 33332 36 9999999999874211 134456666655441 0111
Q ss_pred -----chHHHHHHHHHHHHHHHHHHc-CCc--EEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccchh-hhhh
Q 043456 299 -----NDSWDMHEEMIKNSEEFYQML-KIP--YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDY-QSRR 369 (447)
Q Consensus 299 -----~~s~~~~~~~~~~~~~i~~~L-gl~--yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D~-qs~r 369 (447)
...+..|..+....+.+++.| |++ ++.... ..+ ...-+++.+ ++. .+.|.|+..|. ...- -.+.
T Consensus 193 ~~~~~~~vd~~f~dlKg~le~ll~~lfg~~~~~~~~~~-~~p-~~hPgr~a~--I~~--~g~wlE~lG~G-~lhP~Vl~~ 265 (415)
T 3cmq_A 193 ETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDC-YFP-FTHPSFEME--INF--HGEWLEVLGCG-VMEQQLVNS 265 (415)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE-EET-TEEEEEEEE--EEE--TTEEEEEEEEE-EECHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHcCCCceEEEecC-CCC-CCCCceEEE--EEE--CCeeEEEEEEE-EeCHHHHHH
Confidence 012344788889999999986 985 654321 111 111223333 344 35688887773 2211 1345
Q ss_pred cccEEeccCCCCCcee-EEEeecccccchhHHHHH
Q 043456 370 LEIRYGQKKSNEQTKQ-YVHLLNSTLTATERTICC 403 (447)
Q Consensus 370 l~i~y~~~~~~~~~~~-~~htlngt~~ai~Rll~a 403 (447)
++|. .+. + +.++.++|++..
T Consensus 266 ~gl~---------~~vg~-----afel~le~l~~~ 286 (415)
T 3cmq_A 266 AGAQ---------DRIGW-----AFGLGLERLAMI 286 (415)
T ss_dssp TTCT---------TEEEE-----EEEEEHHHHHHH
T ss_pred cCCC---------CcceE-----EEEEcHHHHhhh
Confidence 5651 122 2 346678888753
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.33 E-value=0.18 Score=55.71 Aligned_cols=135 Identities=10% Similarity=0.016 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCc-cEEEecC--CCccccccCCChhHHHHhhccccCCCC
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEE-LYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSE 253 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~-lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~ 253 (447)
.+.+.+.+++.+...||+|+.+..++..+.++.-+ + ..+ .+.+.+. .+.-+|++|-=..+....+.. .+...
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N-~~r~~ 569 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYN-VARKN 569 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHH-hcCCC
Confidence 34556667788899999999999999887552111 2 233 3556533 234588887655554444332 23456
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHH------HHHHHHHHHHHHHHHcCCcEEE
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWD------MHEEMIKNSEEFYQMLKIPYQV 325 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~------~~~~~~~~~~~i~~~Lgl~yr~ 325 (447)
.|++++++|+|||.+... +++ +||.+......-.... ..|. -|..+....+.+++.||++++.
T Consensus 570 ~~vrlFEiG~Vf~~d~~~---~~~-----~e~~~la~l~~G~~~~-~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~~ 638 (795)
T 2rhq_B 570 KDVRLYEIGRVFFGNGEG---ELP-----DEVEYLSGILTGEYVV-NAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSY 638 (795)
T ss_dssp CCEEEEEEEEEEECCCTT---SCC-----EEEEEEEEEEESEEEE-EGGGTEEEECCHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCeEEEEEeeEEecCCcc---cCc-----chhhEEEEEEEecccc-ccccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 799999999999964310 122 8888888765543211 1232 4788899999999999988554
No 72
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=94.27 E-value=0.19 Score=55.30 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCC-C
Q 043456 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPS-E 253 (447)
Q Consensus 177 ~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~-~ 253 (447)
.+.+.+.+++.+...||+|+.+-.++..+.++. ++. ..+.+.+.+. .+.-+|++|-=..+....+.. .+.. .
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~---l~~-~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N-~~r~~~ 565 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR---FRL-DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKEN-LDLDRP 565 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHH---TTC-CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHH-HHHSCC
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHh---cCC-CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHH-hhcCCC
Confidence 455667778888999999999999998876633 222 2333556543 234588887666555444332 2233 5
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHH-----HHHHHHHHHHHHHHHHcCCcEEEE
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSW-----DMHEEMIKNSEEFYQMLKIPYQVV 326 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~-----~~~~~~~~~~~~i~~~Lgl~yr~v 326 (447)
.|++++++|+||| + +||.+......-.... ..| --|..+....+.+++.||+.++..
T Consensus 566 ~~vrlFEiG~Vf~-~--------------~e~~~lagl~~G~~~~-~~w~~~~~vdf~dlKg~le~ll~~lgi~~~~~ 627 (785)
T 1b7y_B 566 ERALLFEVGRVFR-E--------------REETHLAGLLFGEGVG-LPWAKERLSGYFLLKGYLEALFARLGLAFRVE 627 (785)
T ss_dssp SCEEEEEEEEEES-S--------------SEEEEEEEEEESSCBS-CSSSSCCBCSHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCeEEEEEeeeec-c--------------ChhhEEEEEEECCCcc-cccCccCCcCHHHHHHHHHHHHHHcCCceEEe
Confidence 7999999999999 2 7788877765543211 011 237788899999999999876643
No 73
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.09 E-value=0.51 Score=43.35 Aligned_cols=143 Identities=10% Similarity=0.067 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCCcC
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSELP 255 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~LP 255 (447)
+.+.+-+++.|...||+|+.+-.++..+.++.-+..+. ++...+.+. .+.-+|++|-=+++....+... +...-+
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~--~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~-~r~~~~ 83 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPR--EMAVELMNPLSQELNCMRQTLLFGGLETLSHNL-RRKHLS 83 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCG--GGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHH-TTTCSE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCc--CCeEEecCCccHHHHHHHHHhHHHHHHHHHHHH-cCCCCC
Confidence 45667778888999999999999999875544332111 223334332 2344788876555544433221 223335
Q ss_pred eEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHH------HHHHHHHHHHHHHHHHcCCc---EEE
Q 043456 256 IRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSW------DMHEEMIKNSEEFYQMLKIP---YQV 325 (447)
Q Consensus 256 lrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~------~~~~~~~~~~~~i~~~Lgl~---yr~ 325 (447)
++++++|+||+.+......+. .+--..|..+.-....-.. ...+| .-|..+....+.++..||++ ++.
T Consensus 84 ~~lFEiG~Vf~~~~~~~~~~~-~~~~~~e~~~la~~~~G~~-~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~ 160 (213)
T 3ica_A 84 LYLFEWGKCYRFHAAKRTDET-PLAAYAEDDRLGIWICGQR-VHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTL 160 (213)
T ss_dssp EEEEEEEEEEEEECCCC--CC-SSCEEEEEEEEEEEEEEBC-CC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred eeEEEeeeEEecCCccccccc-cccccchhhEEEEEEeCCC-CcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEE
Confidence 999999999997542110000 0112355555544332221 10122 13778899999999999997 654
No 74
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=94.08 E-value=0.29 Score=45.05 Aligned_cols=141 Identities=10% Similarity=0.094 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCCcC
Q 043456 178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSELP 255 (447)
Q Consensus 178 ~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~LP 255 (447)
+.+.+-+++.|...||+|+.+-.++..+.++.-+..+ ..+...+.+. .+.-+|++|-=+++....+.. .+...-+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N-~~r~~~~ 83 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHN-ANRKNAD 83 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------C
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccC--cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHH-hcCCCCC
Confidence 3566677788899999999999999987554333211 1234455432 234588887655554443322 2233446
Q ss_pred eEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEec--CCc---chHHHHHHHHHHHHHHHHHHcCCc
Q 043456 256 IRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS--PNG---NDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 256 lrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~--~e~---~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
++++++|+||+.+......+. .+-..+|..+.-....-. ++. .....-|..+....+.++..||++
T Consensus 84 v~lFEiG~Vf~~~~~~~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 84 LKFFEFGNCYHFDAEKKNPEK-VLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp CEEEEEEEEEEECC-----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred eeEEEeeeEEecCcccccccc-cccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999997642110000 011235555554433221 110 001234778899999999999997
No 75
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.10 E-value=1.6 Score=37.46 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQLKLS----GKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~----~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
.++-+++.+.+.|+.+.....++|..+|.+ ....+++.++...+++++..|+.+...++.++..
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666666666665555432 1123456677777888888888888888776654
No 76
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.69 E-value=9.6 Score=32.48 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL----SGKDFSEMVTKTNEIKQQSADKEVEVRE 96 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~----~~~~~~~l~~~~~~lk~~i~~le~~~~~ 96 (447)
++.|++..+.++...+..+++++..+...+-.++..+.. ..++.++++++...|..++..|+.++..
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777777655555554444332111 1123466788888888888888876654
No 77
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=82.48 E-value=18 Score=29.22 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------hh----HH-------HHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKD---------------FS----EM-------VTKTNEIK 84 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~---------------~~----~l-------~~~~~~lk 84 (447)
.+.++..+.++...+..++..+..+.+.+...+..+..-.++ .+ .| ..+++.+.
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777766655555432211 11 23 33444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 85 QQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 85 ~~i~~le~~~~~~~~~l~~~~~ 106 (447)
+++..+++++..++..++..+.
T Consensus 91 ~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 91 RQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 5555555555666666665553
No 78
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.61 E-value=8.8 Score=36.00 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
++-.+..+.+.+...+++++++.....+++...+ +..+...|..++..++.++..+++++..+.+++..
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443321 33344556666666666666666666666555544
No 79
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=80.60 E-value=20 Score=28.48 Aligned_cols=74 Identities=9% Similarity=0.175 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------Ch----hHHHHHHHHHHHHHHHHH
Q 043456 31 LVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK---------------DF----SEMVTKTNEIKQQSADKE 91 (447)
Q Consensus 31 ~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~---------------~~----~~l~~~~~~lk~~i~~le 91 (447)
.+.++..+..+...+..++..+..+.+.+...+..+..-.+ +. ..|..+...+..+|+.|+
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777776665555443211 11 235556666777777777
Q ss_pred HHHHHHHHHHHHH
Q 043456 92 VEVREAWAAVKAK 104 (447)
Q Consensus 92 ~~~~~~~~~l~~~ 104 (447)
.++..++.++..+
T Consensus 86 ~~~~~~~~~l~~l 98 (107)
T 1fxk_A 86 RQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666554
No 80
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=80.40 E-value=2.9 Score=25.54 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
..|++++..||++|..|+-++..+.+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777777777777666654
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.18 E-value=7.9 Score=30.53 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=42.8
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 25 RFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 25 R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
||++ -+++..+-+.+|.++++.-.-..+...++. +..+-. +...|..++..|+.++..+..+...+.+.+.
T Consensus 16 ~gls---~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q-~~~LE~---e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 16 RGFT---KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQ-KHHLEN---EKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TTCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 367888888888888877766666555543 222221 2234556666666666666666666555543
No 82
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.06 E-value=30 Score=27.68 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
++...+..++..|+.++..++.++.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544443
No 83
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.86 E-value=13 Score=36.92 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL-SGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~-~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
.-+..+.+.+|+.+.+.++.....|+++.++.+... -++.+..-+..++.|+..|.++-.++..||.++
T Consensus 88 ~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 88 TLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777888888887777777777776543211 011233334477888888888888888888887
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.77 E-value=8.3 Score=39.75 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIA----QLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~----~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+..+.+++++-+....+.....|+++.++. -++. .++..+++++.|+..|+++-.++..||-+|+-.+
T Consensus 87 ~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKe---kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 87 TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKR---KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555565555555566666666664432 2222 2333346666677777777777777776666554
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.95 E-value=4.8 Score=28.51 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 70 GKDFSEMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 70 ~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
..|.+.|+.+..+|+.++..|.++..++..++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677888888888888888888888777654
No 86
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=70.94 E-value=37 Score=27.26 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
-..||++.-.+..+++-|+-........+.++.+.- .+...+...+|..+..|..++..+..+|.+
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~---~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQY---EEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999888888888777776632 333445566666666676666666665543
No 87
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=69.94 E-value=35 Score=26.16 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
....-.|.++.+.++.+++++.++|++--+++..-| +++..|+.++..-+.++.-+.+++
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK----------~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATK----------AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344456788888899999999999998888764433 345555555555555555555443
No 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.67 E-value=15 Score=41.75 Aligned_cols=22 Identities=23% Similarity=0.133 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAW 98 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~ 98 (447)
.+++..|+++...|++++.+++
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444444
No 89
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=67.45 E-value=28 Score=32.45 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
..++..++.+++.++.++..+.+.+...--+
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 90
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=65.59 E-value=35 Score=34.63 Aligned_cols=74 Identities=7% Similarity=0.119 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL-SGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~-~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
-.-+..+.+.||+-+.+.++.....|+++.++...-. -++.+..-++.++.|+..|.++-.++..||..+...+
T Consensus 85 ~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 85 NRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788888999999999888888888887653211 0112233336677777777777777777777766443
No 91
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.12 E-value=29 Score=26.94 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 41 KWRQLQFDVENYRKELNKINKQIAQLK---LSGKDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~~~k---~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
++..+-.+++.|.+++..+..+++... .+......+.++...+..+|..+......|++
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888887777765421 11112334556666666666666666655543
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.58 E-value=28 Score=36.12 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 043456 73 FSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLV 112 (447)
Q Consensus 73 ~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~ 112 (447)
..++..+....|+++.+++++...+.+++.++...++--+
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456666777777888888888888888888887776443
No 93
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=61.11 E-value=32 Score=37.71 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=79.1
Q ss_pred HHHHHHHHHHCCCeEecCCccCcHHHHHHhCCcCCCcCccEEEecC--CCccccccCCChhHHHHhhccccCCCCcCeEe
Q 043456 181 INFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGE--GDDKYLIATAEQPLCAYHIDDWIHPSELPIRY 258 (447)
Q Consensus 181 ~~~~~~~~~~~G~~~v~~P~l~~~~~~~~~G~~~~~~~~lf~i~~~--~~~~~L~pTsE~~l~~l~~~~~~s~~~LPlrl 258 (447)
.+.+++.|...||+|+.+-.|+..+..+.-+.. ++...+.+. .+.-+|++|-=.++....+.. .+...-++++
T Consensus 495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~----~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N-~~r~~~~v~l 569 (795)
T 3pco_B 495 LKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPG----VEALLLPSPISVEMSAMRLSLWTGLLATVVYN-QNRQQNRVRI 569 (795)
T ss_dssp HHHHHHHHHHTTCEECCCCSEECHHHHHHHSSS----CCCCBCSSCSCSTTCEECSSSHHHHHHHHHHH-HTSSCCCCEE
T ss_pred HHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCC----CCeEEEcCCCchhHHHHHHHHHHHHHHHHHHH-HhCCCCCccE
Confidence 445677788999999999999999887765511 222334332 233478887655554433332 2344567999
Q ss_pred eccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHH------HHHHHHHHHHHHHHHHcCC--cEE
Q 043456 259 AGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSW------DMHEEMIKNSEEFYQMLKI--PYQ 324 (447)
Q Consensus 259 ~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~------~~~~~~~~~~~~i~~~Lgl--~yr 324 (447)
+++|.+|+..... + .| .+|..+.=. .++.....+.| .-|..+....+.++..||+ .|.
T Consensus 570 FEiG~Vf~~~~~~---~-~~---~~e~~~la~-~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~~~~~~ 635 (795)
T 3pco_B 570 FESGLRFVPDTQA---P-LG---IRQDLMLAG-VICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVE 635 (795)
T ss_dssp EEEEEEEEECTTS---S-TT---EEEEEEEEE-EEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSCCSSCC
T ss_pred EEeeeEEecCCCc---c-cC---cchhheEEE-EEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCCCcceE
Confidence 9999999875321 1 11 234433332 23321110011 1377889999999999997 454
No 94
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.79 E-value=71 Score=26.44 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
.+|.++......++.+++.+++.+..+-..|......+ -.++..+...|..|+.++..+..++
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~------~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG------ELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56777777777888888888888887777776654322 1233444455555555555554443
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.30 E-value=54 Score=24.90 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+-.++..|+..|..|+.++..+++++....
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667777777666666665543
No 96
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.11 E-value=70 Score=32.13 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043456 85 QQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 85 ~~i~~le~~~~~~~~~l~~~ 104 (447)
++|++||.++.+++.+|.+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655544
No 97
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.63 E-value=45 Score=37.85 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVT-KTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~-~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+-.+.++..++..++.+|..+...+.+++.++.++++..++-.+ .-.+|.++++.|+++...|+++++++-
T Consensus 972 le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443333222221111 112455666666666666666665543
No 98
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=59.29 E-value=72 Score=26.04 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
+++..|..+.++++..+..+.+.|..+.......+ ++-+.++..|...+++-|..+..+...
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~------E~~k~qV~~L~~~~q~sE~~L~~Lqq~ 67 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSS------EDSSHQISALVLRAQASEILLEELQQG 67 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555543322 223444555555555544444444443
No 99
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.69 E-value=68 Score=26.66 Aligned_cols=63 Identities=11% Similarity=0.175 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
.+|.++......++.+++.+++.+..+-..|......+ -.+.+.+...|..|+.++..+..++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~------~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY------CMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777777777777776666543321 2234444555555555555554443
No 100
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=57.84 E-value=70 Score=25.43 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQLKLSG--KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~--~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
|-.+...++.++++....|..+.|-++.-.++. .|..++-.++.+....|..|..++..++..|.++-
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444445555555444332222 14445566777778888888888888877766653
No 101
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.08 E-value=39 Score=35.03 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
.+++..++++++..+..+++++++++.
T Consensus 556 ~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 556 KRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555555543
No 102
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=54.49 E-value=27 Score=27.60 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQ--IAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~--I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
...+.++++.++-+|+.++|.+|-+ .++= ..|..+...+.++|+.+.+.+..-...++..+-.|
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~stSaQDeFAKW-------aKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNNSISAQDNYAKW-------TKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777776642 2111 23566677777788888877777777777665554
No 103
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=54.06 E-value=44 Score=21.97 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=23.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 62 QIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 62 ~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
++..++++|-..+ +...+..+++.||+++..+..++..
T Consensus 8 elqalkkegfspe----elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 8 ELQALKKEGFSPE----ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHTTCSHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666664444 3455667777777777777776654
No 104
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=52.76 E-value=73 Score=27.37 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 41 KWRQLQFDVENYRK-ELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~-~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
=+++|+.+++.|+. +|-++.+.|..+...|. ..+ -++-..-|++...++..+..|++.|...
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gD-lsE-NaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGD-LKE-NAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCC-GGG-CHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhccc-ccc-cchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 35678899999998 89999999988876652 211 0122334566666777777777766553
No 105
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=52.35 E-value=5.2 Score=38.91 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=53.8
Q ss_pred cccceeeeecCCCceeeEEEecccchhhhhhcccEEeccCC----------CCCceeEEEeecccccchhHHHHHHHHh-
Q 043456 339 KKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKS----------NEQTKQYVHLLNSTLTATERTICCILEN- 407 (447)
Q Consensus 339 ~~~diE~w~p~~~~~~ev~s~sn~~D~qs~rl~i~y~~~~~----------~~~~~~~~htlngt~~ai~Rll~allE~- 407 (447)
..+||-+|.|-.+.+.|++|+..-.|..+-.-.++..+..+ -++ ..+.|+ |-|++.+|+.--||..
T Consensus 232 LNGDilvw~~vl~~a~ElSSMGIRVd~~~L~~QL~~~g~~er~~~~yh~~ll~g--~LP~Ti-GGGIGQSRLcmflL~k~ 308 (330)
T 12as_A 232 LNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLELEWHQALLRG--EMPQTI-GGGIGQSRLTMLLLQLP 308 (330)
T ss_dssp SEEEEEEEETTTTEEEEEEEEEEBCCHHHHHHHHHHHTCTTGGGSHHHHHHHTT--CSCCEE-EEEEEHHHHHHHHHTCS
T ss_pred ccceEEEeccccCceeEEecceEEeCHHHHHHHHHHcCCChhhccHHHHHHHcC--CCCccc-cccccHHHHHHHHhccc
Confidence 56789999999999999999987777753221222221100 011 346676 5589999999999985
Q ss_pred cCCCCC-cccCCcccCcC
Q 043456 408 YQKEDG-VEVPEVLQPFM 424 (447)
Q Consensus 408 ~q~~~g-i~iP~~L~py~ 424 (447)
|-++.. -.||+....++
T Consensus 309 HIGEVQ~svW~~~~~~~~ 326 (330)
T 12as_A 309 HIGQVQAGVWPAAVRESV 326 (330)
T ss_dssp CGGGTSCCCCCHHHHHHC
T ss_pred hhheeecccCCHHHHHHh
Confidence 444443 36887655443
No 106
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=52.24 E-value=1.2e+02 Score=26.59 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG-KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~-~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
++-.++.+.+.+.+.+...|+.+......++..+.... -|.. +++++-+++.+|..++....-++...+..
T Consensus 71 EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~Dea----kI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTA----KINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555566666666666666666665432 2332 45556666666666666666655555544
No 107
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=52.22 E-value=94 Score=27.76 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 34 EIISLDKKWRQLQFDVENYRKEL 56 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~r 56 (447)
+|-.+..+-+.++.+...|..+.
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~ 72 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEV 72 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 108
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=52.17 E-value=40 Score=29.14 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCC
Q 043456 41 KWRQLQFDVENYRK-ELNKINKQIAQLKLSG---KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV--GNLVHD 114 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~-~rN~isk~I~~~k~~~---~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l--PN~~h~ 114 (447)
-+.+|+.+++.|.. +|-++.++|+.+...| ++.+- ..-|++...++..+..|++.|... .-+ +.++++
T Consensus 10 g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY-----~aak~~q~~~e~rI~~L~~~L~~A-~vid~~~~~~~ 83 (158)
T 2p4v_A 10 GYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADY-----QYNKKRLREIDRRVRYLTKCMENL-KIVDYSPQQEG 83 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHH-----HHHHHHHHHHHHHHHHHHHHHHHC-EECCCCSSSCS
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhH-----HHHHHHHHHHHHHHHHHHHHHhhC-eecCCccCCCC
Confidence 35678889999954 8999999998877665 23221 123666677777777777766543 222 223345
Q ss_pred CCCCCC
Q 043456 115 SVPVSN 120 (447)
Q Consensus 115 ~vP~g~ 120 (447)
.|-+|.
T Consensus 84 ~V~~Gs 89 (158)
T 2p4v_A 84 KVFFGA 89 (158)
T ss_dssp SCSSSC
T ss_pred EEeccE
Confidence 566663
No 109
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.62 E-value=1.2e+02 Score=26.14 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 47 FDVENYRKELNKINKQIAQLKLS----GKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~k~~----~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
..+..|++++..+..+|.++... .+..+.+.++...|.-++..++.++..++++=
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666554321 11234566666667777777777777666643
No 110
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=51.44 E-value=76 Score=27.16 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCC
Q 043456 41 KWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVS 119 (447)
Q Consensus 41 ~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g 119 (447)
-+..|+.+++..+.+|.++.++|+.+...|.-.+. .+-...|++...++..+..|++.|... .-++.-..+.|-+|
T Consensus 11 g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEn--aey~aak~~q~~~e~ri~~L~~~L~~a-~vi~~~~~~~V~~G 86 (156)
T 2f23_A 11 GYERLMQQLERERERLQEATKILQELMESSDDYDD--SGLEAAKQEKARIEARIDSLEDILSRA-VILEEGSGEVIGLG 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCS--HHHHHHHHHHHHHHHHHHHHHHHHHHE-EECCTTCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHHHHHHHHHHHHHHHHHhC-cccCCCCCCEEEeC
Confidence 35567778888777899999999888776521110 122344556666777777777776653 33433233445555
No 111
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.34 E-value=90 Score=24.76 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 16 EKIRESQRRRFA-SVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 16 e~v~~~l~~R~~-~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
|.|++.+..=.. ..+.++..-.+..+.+....+..++..+...+++.|..+-
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445554433222 1234677788888888888888888888888888776553
No 112
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.52 E-value=89 Score=24.46 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=27.7
Q ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 19 RESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKE 55 (447)
Q Consensus 19 ~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~ 55 (447)
-++|..|.. +.||.|-.|.++-+.|..+++.++..
T Consensus 11 mq~LNdRlA--syIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 11 LQELNDRFA--NLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777763 57899999999999998888888754
No 113
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=50.08 E-value=80 Score=25.78 Aligned_cols=19 Identities=5% Similarity=-0.023 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043456 82 EIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~~~~ 100 (447)
+-+.++..|......-|..
T Consensus 42 ~~k~qV~~L~~~~q~sE~~ 60 (112)
T 1x79_B 42 DSSHQISALVLRAQASEIL 60 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 114
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.82 E-value=1.3e+02 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 36 ISLDKKWRQLQFDVENYRKELNKINKQ 62 (447)
Q Consensus 36 ~~ld~~~r~l~~~~~~Lr~~rN~isk~ 62 (447)
-.+....++++..+..|...+..+.++
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke 70 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKD 70 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 115
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.82 E-value=91 Score=24.40 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHHhhCCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 19 RESQRRRFAS----VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 19 ~~~l~~R~~~----~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
+..+++||.. .--+++...|..+...++.+++.|+.+...+.+++...+
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666531 123688888888888888888888888888888776554
No 116
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=48.20 E-value=1e+02 Score=25.30 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+..+.+.+.+.++.+++.+..+.+++....
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554443
No 117
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.66 E-value=22 Score=20.87 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAW 98 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~ 98 (447)
|++.-..||.+|..||-++..++
T Consensus 5 lkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHHHHhc
Confidence 44455566777777776666554
No 118
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.39 E-value=43 Score=21.72 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
..+.|++|..|+.++..|.++=.+++++|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667788888888888877777766653
No 119
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=47.19 E-value=36 Score=34.80 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=28.5
Q ss_pred hhhhcccCCCHHHHHHHHHhhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 5 NLFREEKGGIPEKIRESQRRRF-ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 5 k~ir~~~~~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
+.||.+ .+++..+++|..++ ++..-.+.|+++- -+|-...+.+.++.+..++.++|+.+
T Consensus 376 ~iIr~s--~~~~~a~~~L~~~f~lse~Qa~aIl~mr-L~rLt~le~~kl~~E~~~l~~~i~~l 435 (470)
T 3ilw_A 376 ALIRAS--ETVDIARAGLIELLDIDEIQAQAILDMQ-LRRLAALERQRIIDDLAKIEAEIADL 435 (470)
T ss_dssp HHHHHC--SSHHHHHHHHHHHHTCCHHHHHHHHTCB-GGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--CCHHHHHHHHHHhcCCCHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455644 35566666666663 3333344444432 12223334555555555555555444
No 120
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.13 E-value=1.2e+02 Score=31.44 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
+|..++..||.+|...-..++.|+..|.++...
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555666666555555433
No 121
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.76 E-value=96 Score=23.78 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 45 LQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
++-++++|+.+.+.++.+...+ ......+..+...|..+.....+++..++-++
T Consensus 25 LqmEieELKekN~~L~~e~~e~----------~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNA----------QHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446666666666665544333 33334455566666666666666666666543
No 122
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=46.63 E-value=46 Score=25.08 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 043456 47 FDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
..+..|..+-+.+.++|..+-..
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~ 39 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQ 39 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555555555555554433
No 123
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.62 E-value=43 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADK 90 (447)
Q Consensus 79 ~~~~lk~~i~~l 90 (447)
++..||=+|..|
T Consensus 17 eiaalkfeiaal 28 (33)
T 4dzn_A 17 EIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 124
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=46.20 E-value=51 Score=24.87 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCcCC
Q 043456 71 KDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV----GNLVHD 114 (447)
Q Consensus 71 ~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l----PN~~h~ 114 (447)
...++|++.+-+++.+++.-+..+.+||+=++.+++++ |+++.-
T Consensus 14 ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~iLq~ 61 (75)
T 3tso_C 14 LTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSILRV 61 (75)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhC
Confidence 35678888888999999999999999999988888654 777653
No 125
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=46.14 E-value=1.6e+02 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 80 TNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
+..++..+..++..+..+..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (284)
T 1c1g_A 85 VASLNRRIQLFEEELDRAQERLA 107 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 126
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.03 E-value=1e+02 Score=24.42 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
++-.+-.++..++.+++.+..++..+..++..+..
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777777666666655443
No 127
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.84 E-value=1e+02 Score=23.69 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINK 61 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk 61 (447)
||.|--|--+..+++.+-..|..+.+.++.
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554444444555555554444444444433
No 128
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=45.82 E-value=78 Score=27.20 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 87 SADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 87 i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
-+.--..+..+..+++..+..||-+
T Consensus 126 yK~Kl~rv~~vkkeL~~hi~sLPDl 150 (152)
T 4fla_A 126 YKQKLARVTQVRKELKSHIQSLPDL 150 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 3333444555666677777777754
No 129
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.67 E-value=1.1e+02 Score=24.20 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 49 VENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 49 ~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
.++|..+.+.+.++|..+ +.+..+++.||++-.-|+.++....+++
T Consensus 49 ~~eL~~EI~~L~~eI~~L-------E~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQL-------EKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666554 3455667777777777776666655543
No 130
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.15 E-value=1.1e+02 Score=24.18 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043456 84 KQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 84 k~~i~~le~~~~~~~~~l~~ 103 (447)
+.+-..++.....|.++|.+
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44445556666666666544
No 131
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=45.07 E-value=77 Score=22.18 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 043456 48 DVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~~k~ 68 (447)
++++|+.+..++.|.|..+-.
T Consensus 26 rieelkkkweelkkkieelgg 46 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGG 46 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHhCC
Confidence 345555555556666655533
No 132
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=44.54 E-value=1.7e+02 Score=25.86 Aligned_cols=27 Identities=4% Similarity=0.070 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
..+...+..++..+...+..+...+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (284)
T 1c1g_A 89 NRRIQLFEEELDRAQERLATALQKLEE 115 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 133
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.48 E-value=1.3e+02 Score=24.63 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
.+|..+++.|+.+|++.+.++..+..+...+-.+|+-
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 4556666666666666666666666665555555543
No 134
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=44.35 E-value=56 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 043456 51 NYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 51 ~Lr~~rN~isk~I~~~k~~~ 70 (447)
-|...++.|..-|.++++++
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~ 25 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAG 25 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 45667778888888888776
No 135
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.33 E-value=60 Score=21.66 Aligned_cols=23 Identities=4% Similarity=0.188 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAW 98 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~ 98 (447)
|++++..+..+|...++++..+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 136
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=44.18 E-value=1.2e+02 Score=23.99 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 16 EKIRESQRRRFA-SVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 16 e~v~~~l~~R~~-~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
|.|++.+..=.. ..+.+|.+-.+..+.+....+..++..+...+++.|..+-
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555533222 2245788888888888888888888888888888886553
No 137
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=43.88 E-value=12 Score=38.34 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=27.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCcccCC-cccCcCCCceeecCC
Q 043456 392 STLTATERTICCILENYQKEDGVEVPE-VLQPFMGGKTFLPFK 433 (447)
Q Consensus 392 gt~~ai~Rll~allE~~q~~~gi~iP~-~L~py~~g~~~i~~~ 433 (447)
|.+++++|++.+|.|+ |+ ||. |++|+. +-++|..
T Consensus 346 GfaiGieRli~~L~e~-----g~-~p~~~~~p~~--V~Vi~~~ 380 (465)
T 3net_A 346 GISIGLTRLISRLLKA-----GI-LNTLPPTPAQ--VVVVNMQ 380 (465)
T ss_dssp EEEEEHHHHHHHHHHT-----TS-SCCCCSCSCC--EEECCSC
T ss_pred eeeccHHHHHHHHHHc-----CC-CCCcCCCCCe--EEEEEcC
Confidence 7888999999999996 33 786 788877 6667654
No 138
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.68 E-value=1e+02 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQ 62 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~ 62 (447)
|+--+.++..++|+|-.++..+..+
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~E 52 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGE 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333444444444444444444433
No 139
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.45 E-value=1.9e+02 Score=28.54 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043456 43 RQLQFDVENYRKELNKINK 61 (447)
Q Consensus 43 r~l~~~~~~Lr~~rN~isk 61 (447)
+.+..+++.|+.+...+++
T Consensus 63 r~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5555555555555544433
No 140
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=43.29 E-value=2.5e+02 Score=27.53 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~ 111 (447)
.+...++-.++..+...++..+.-++.+. .+..+..--+|. +++ ..++++++.+++++..++.++..++ ||+-
T Consensus 28 ~~~~~~~~ke~~~l~~~v~~~~~~~~~~~-~~~~~~el~~D~-e~~---~~a~~e~~~l~~~~~~le~~l~~lL--lp~~ 100 (354)
T 3d5a_X 28 KGRYQSLSRRYAEMGEVIGLIREYRKVLE-DLEQAESLLDDP-ELK---EMAKAEREALLARKEALEKELERHL--LPKD 100 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTSTTCH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCH-HHH---HHHHHHHHHHHHHHHHHHHHHHHhc--CCCC
Confidence 45555666666665555555444333332 233322211122 222 3456778888888888888777544 5654
Q ss_pred cC
Q 043456 112 VH 113 (447)
Q Consensus 112 ~h 113 (447)
++
T Consensus 101 ~~ 102 (354)
T 3d5a_X 101 PM 102 (354)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 141
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.57 E-value=69 Score=21.35 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 043456 80 TNEIKQQSADKEVEVR 95 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~ 95 (447)
+..|+++|..||.++.
T Consensus 33 ianlrdeiarleneva 48 (52)
T 3he5_B 33 IANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455566666655543
No 142
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.46 E-value=1.1e+02 Score=23.26 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 043456 45 LQFDVENYRKE 55 (447)
Q Consensus 45 l~~~~~~Lr~~ 55 (447)
++..+++.+++
T Consensus 16 l~E~~~q~qaE 26 (78)
T 3iv1_A 16 MKEEMDRAQAE 26 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHH
Confidence 33333333333
No 143
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=42.19 E-value=86 Score=21.93 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 043456 71 KDFSEMVTKTNEIKQQSAD---------KEVEVREAWAAVK 102 (447)
Q Consensus 71 ~~~~~l~~~~~~lk~~i~~---------le~~~~~~~~~l~ 102 (447)
..+++|+..-.+||+.|.+ .++++..+++++.
T Consensus 25 grieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 25 GRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 4566777777777776654 4666677766654
No 144
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=41.91 E-value=1.6e+02 Score=29.03 Aligned_cols=13 Identities=0% Similarity=0.102 Sum_probs=6.8
Q ss_pred CCCCCCCceEEEe
Q 043456 118 VSNDEANNAIVRT 130 (447)
Q Consensus 118 ~g~~e~~~~~i~~ 130 (447)
.|+.++.|.++..
T Consensus 120 ~~~~D~~naileI 132 (365)
T 1gqe_A 120 SGEYDSADCYLDI 132 (365)
T ss_dssp CSTTTTSCEEEEE
T ss_pred CCcccccceEEEE
Confidence 3444556665544
No 145
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=41.31 E-value=19 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINK 61 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk 61 (447)
...+.++++.++-+|+.+.+.+|-
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSa 27 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISA 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred hHHHHHHHHHHHHHHHHHHhccch
Confidence 345667777777777777777664
No 146
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.18 E-value=1.4e+02 Score=24.20 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 043456 58 KINKQIAQ 65 (447)
Q Consensus 58 ~isk~I~~ 65 (447)
.++++|..
T Consensus 39 ~Lq~El~~ 46 (111)
T 2v66_B 39 VLEDDLSQ 46 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 147
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.80 E-value=1.5e+02 Score=29.81 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
++++-..+++.+.++..++.+..+.+.+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 447 LAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 34444444555555555555444444443
No 148
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=40.72 E-value=38 Score=36.37 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 13 GIPEKIRESQRRRF-ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 13 ~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
.+++.+++.+..++ ++..-.+.|+++- -||-...+.+.|+.+..++.++|..
T Consensus 603 ~~~~~a~~~L~~~f~lse~Qa~aIL~m~-L~rLt~le~~kl~~E~~~l~~~i~~ 655 (692)
T 2xcs_B 603 DTDKVAMESLQQRFKLSEKQAQAILDMR-LRRLTGLERDKIEAEYNELLNYISE 655 (692)
T ss_dssp SSHHHHHHHHHHHHTCCHHHHHHHHTCB-GGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhccCCCHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555552 2222233333331 1222233444444444444444443
No 149
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.32 E-value=1.3e+02 Score=23.28 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
+++..++++...++..++...+.|+.+..+...+.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~ 48 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLL 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666555544443
No 150
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=40.04 E-value=91 Score=24.19 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~ 97 (447)
+..+.+....+|+.|..++.+|
T Consensus 61 V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 61 VELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 151
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.96 E-value=1.4e+02 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
.+..+...++.++..++.++..+++++.
T Consensus 75 ~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777766665
No 152
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=39.19 E-value=1.4e+02 Score=23.46 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
+..+-.+-..+..++..|.+++-.+..+|..+
T Consensus 13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 13 LKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444455555555555555555443
No 153
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=39.09 E-value=2e+02 Score=26.53 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+..|-.+...+..+++-|.=++|-++.+|..+-.. ++.|..--+-+-++|+.||+....|+..|
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~K---I~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVE---VENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45677777788888888888888888877665321 22222222233445555555555555444
No 154
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=38.70 E-value=1.8e+02 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIA 64 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~ 64 (447)
|+..-..+..+++.|+--.+.+.+.+.
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~ 45 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVA 45 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444555666666666666665554
No 155
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=38.35 E-value=1.4e+02 Score=24.00 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=10.1
Q ss_pred hhhhhcccCCCHHHHHHHHHhh
Q 043456 4 INLFREEKGGIPEKIRESQRRR 25 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R 25 (447)
+++|| .|.|.-++--..|
T Consensus 4 i~LLR----K~aE~~KqL~~~~ 21 (107)
T 2no2_A 4 ADLLR----KNAEVTKQVSMAR 21 (107)
T ss_dssp HHHHH----HHHHHHHHHHHHH
T ss_pred HHHHH----HhhHHHHHHHHHH
Confidence 45666 6666555554444
No 156
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.91 E-value=1.4e+02 Score=23.04 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+.+......++.+..+...|.+++|.+..+. .++-.....|.+.-.+|+.++..+++++
T Consensus 28 e~l~k~e~~rkele~~~~~l~~ek~~L~~ql----------~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 28 EDLAKTERIKKELEEQNVTLLEQKNDLFGSM----------KQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777788888888888888887762 1122233344444455666666666554
No 157
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=37.29 E-value=2e+02 Score=24.69 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
+.|..|-.+...+..++.++..+...-.|.+..+.. +...|..+...+.+++..|+++-..|-++....
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~D---El~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNA---ALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666655555555544432 345677788888888888888777776655443
No 158
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.06 E-value=1.1e+02 Score=21.49 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINK 61 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk 61 (447)
+.+..+......+..+++.++++......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 33 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKE 33 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 159
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=36.83 E-value=18 Score=36.17 Aligned_cols=34 Identities=9% Similarity=-0.105 Sum_probs=26.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 392 STLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 392 gt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
|.+++++|++++|.|+ |+. |.+.+|+. +-++|..
T Consensus 303 Gf~igveRl~~~l~e~-----~~~-~~~~~p~~--v~i~~~~ 336 (423)
T 1htt_A 303 GFAMGLERLVLLVQAV-----NPE-FKADPVVD--IYLVASG 336 (423)
T ss_dssp EEEEEHHHHHHHHHHH-----STT-CCCCCSCS--EEEEECS
T ss_pred EEEecHHHHHHHHHhc-----CcC-CCCCCCCc--EEEEEcC
Confidence 7899999999999996 233 44568888 7778875
No 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.79 E-value=74 Score=32.71 Aligned_cols=29 Identities=7% Similarity=0.027 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
+.+++++.++|.+++..+++++.++-..+
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666554433
No 161
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=36.02 E-value=1.8e+02 Score=23.88 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCcC
Q 043456 47 FDVENYRKELNKINKQIAQLKLSGKD--F-SEMVTKTNEIKQQSADKEVEVREAWAAVKAK----LEVVGNLVH 113 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~k~~~~~--~-~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~----~~~lPN~~h 113 (447)
..+.+.+..++.|+..+..+.+..+. . ......+++.++.+++|+.+++..+.-++.. .++=+|+-|
T Consensus 41 ~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~lr~gn~~~ 114 (119)
T 3etw_A 41 QALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGNLEH 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 34444555556666666555443321 1 2344556677777777777777777666543 234456554
No 162
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=35.93 E-value=65 Score=18.71 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSAD 89 (447)
Q Consensus 76 l~~~~~~lk~~i~~ 89 (447)
|+-+++.||++++.
T Consensus 12 lkgevralkdevkd 25 (27)
T 3v86_A 12 LKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhc
Confidence 34444444444443
No 163
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=35.90 E-value=37 Score=35.15 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEV 92 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~ 92 (447)
+++.++..++.++|+.|+.
T Consensus 457 ~kl~~E~~~l~~ei~~l~~ 475 (514)
T 2inr_A 457 VALEGEHKELEALIKQLRH 475 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 164
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.31 E-value=1.3e+02 Score=24.63 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 46 QFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 46 ~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
++++.+|..+...+..+...+...+. .+ -+.++.+++..|++++..+..
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd-~~----~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEA-AD----KYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTC-TT----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-HH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655544442 21 122344444444444444443
No 165
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=34.75 E-value=2.7e+02 Score=25.57 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043456 42 WRQLQFDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 42 ~r~l~~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
.|.....+...|.+|..+..+|.+++..
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k 126 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYK 126 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 3444456777888889999999887753
No 166
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=34.67 E-value=1.6e+02 Score=22.81 Aligned_cols=24 Identities=0% Similarity=-0.072 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 81 NEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
..+..++...+.++..|.++|.++
T Consensus 59 ~~V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 59 GPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666777777777777776654
No 167
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.43 E-value=1.9e+02 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQI 63 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I 63 (447)
..++.+..+...|..++|.+..++
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 168
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=34.23 E-value=47 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAW 98 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~ 98 (447)
.++++...+|+++..++-++..+.
T Consensus 6 aikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555543
No 169
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.20 E-value=1.3e+02 Score=23.24 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.2
Q ss_pred HHHHHH
Q 043456 49 VENYRK 54 (447)
Q Consensus 49 ~~~Lr~ 54 (447)
.++|.+
T Consensus 39 kEqL~~ 44 (84)
T 1gmj_A 39 KEQLAA 44 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 170
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=34.11 E-value=1.6e+02 Score=31.98 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=38.1
Q ss_pred eEeeccccccccCccCCCCCCcC-ceeeeee-eeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc
Q 043456 256 IRYAGYSSCFRKEAGSHGRDTLG-IFRVHQF-EKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322 (447)
Q Consensus 256 lrl~~~s~~fR~E~~~~G~~~~G-L~R~~qF-~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~ 322 (447)
-+++...+|-|.-- + +.-| .-|=|+| +|.--|+|-.|+. -.-.=++.+..+.++++.|||+
T Consensus 118 ~~~~~~Q~ciR~~D---~-envg~t~rH~tfFeMlgn~sFg~~~~--~dYfK~eai~~~~e~l~~~g~~ 180 (739)
T 2ztg_A 118 NPLTISQPCIRLDD---L-DSVGRTGRHLTLFEMMAHHAFNYPGK--EIYWKNETVAYCTELLNELGVK 180 (739)
T ss_dssp SSEEEEEEEECGGG---G-GGTTTSSSCCSEEEEEEEEEEEBTTB--CSCCHHHHHHHHHHHHHHHTCC
T ss_pred CCcccccccccCcc---c-ccCCCCCcchhhhhccCccccCCCcc--ccchHHHHHHHHHHHHHHhCCC
Confidence 35566678999521 1 3333 2255555 8888889986643 2222345677788888779998
No 171
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=34.10 E-value=76 Score=22.83 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 043456 50 ENYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 50 ~~Lr~~rN~isk~I~~~k~~~ 70 (447)
+-|...++.|.+-|.++++++
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~ 32 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCG 32 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHcC
Confidence 446667788888888888876
No 172
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.03 E-value=1.8e+02 Score=29.21 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 46 QFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 46 ~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
+.+.+..++.-+..+.+|.++++. .+.++.++.++..++.+..+.+..+-.+=..++.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEE---NARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHH---hhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 333333444445555556555542 24456666666666666666666555554444433
No 173
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=34.02 E-value=1.4e+02 Score=28.19 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCcCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-----EEEE
Q 043456 252 SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-----YQVV 326 (447)
Q Consensus 252 ~~LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-----yr~v 326 (447)
..=|.+.+=+.+|.|.--|-+|....-|.+=+||. ++.+|.- ..+.+.|.+-++.|||. .|-|
T Consensus 68 GpePw~~AYVqPsRRP~DGRYGeNPNRLq~yyQfQ-----VilKPsP-------~niQeLYL~SL~alGId~~~HDIRFV 135 (311)
T 3rf1_A 68 GKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQ-----VLIKPSP-------DNIQELYLKSLENLGFDLKSHDIRFV 135 (311)
T ss_dssp SSSCEEEEEEEEEECGGGCCTTCCSSCCSEEEEEE-----EEEESCC-------TTHHHHHHHHHHHTTCCGGGSCEEEE
T ss_pred CCCcceeeeeccCCCCCCCCcCCCchhhhhheeeE-----EEEcCCC-------ccHHHHHHHHHHHhCCCccccCeeEe
Confidence 33589999999999999999997777788888884 3456644 23345566777899984 5555
Q ss_pred Eec--CCCCCcccccccceeeeecCCCceeeEEEe
Q 043456 327 AIV--SGALNDAAAKKLDLEAWFPASQTYRELVSC 359 (447)
Q Consensus 327 ~~~--t~dlg~~a~~~~diE~w~p~~~~~~ev~s~ 359 (447)
+=. +-.+|++ -.--|||+.+ .||+..
T Consensus 136 EDnWEsPTLGAW---GLGWEVWldG----MEVTQF 163 (311)
T 3rf1_A 136 EDNWESPSLGAW---GLGWEVWLDG----MEVTQF 163 (311)
T ss_dssp ECCEEETTTTEE---EEEEEEEETT----EEEEEE
T ss_pred ccCCCCCccccc---ccceEEEEcC----eeEeee
Confidence 411 1223322 2344788766 466554
No 174
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.93 E-value=1.7e+02 Score=22.79 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+.+..+++.+.+++..++.++..++..++.
T Consensus 75 e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 75 ETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666654
No 175
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=33.05 E-value=1.2e+02 Score=31.29 Aligned_cols=21 Identities=10% Similarity=0.098 Sum_probs=16.3
Q ss_pred hhhhhcccCCCHHHHHHHHHhhC
Q 043456 4 INLFREEKGGIPEKIRESQRRRF 26 (447)
Q Consensus 4 ik~ir~~~~~n~e~v~~~l~~R~ 26 (447)
|+.||.+ ++++..+++|..|+
T Consensus 364 I~iIR~s--~~~~~Ak~~L~~~~ 384 (500)
T 3lpx_A 364 IEMIKNS--NNRKESEEKLISQG 384 (500)
T ss_dssp HTTTTTC--SSHHHHHHHHHSSC
T ss_pred HHHHHcC--CCHHHHHHHHHhcc
Confidence 5678866 67888899998873
No 176
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.87 E-value=1.3e+02 Score=25.09 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 37 SLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 37 ~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
+++...++|+..+..++.....+.+.|....+
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~ 95 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEA 95 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666667777777777776665443
No 177
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.53 E-value=1.5e+02 Score=29.43 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 49 VENYRKELNKINKQIAQLKL---SGKDFSEMVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 49 ~~~Lr~~rN~isk~I~~~k~---~~~~~~~l~~~~~~lk~~i~~le~~~~~~ 97 (447)
++.|+.+++++.+++.++.+ .+.+....+.+.+++.++++.+++.+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443321 12223445566666777777766665554
No 178
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.49 E-value=51 Score=21.99 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 59 INKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAA 100 (447)
Q Consensus 59 isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~ 100 (447)
+.|+|+.+|++. -.|...-..|.+-|..|..++..++++
T Consensus 8 lrkkiarlkkdn---lqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 8 LRKKIARLKKDN---LQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh---hhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 456676666642 122233345556666666666666554
No 179
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.25 E-value=1.3e+02 Score=30.03 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=23.6
Q ss_pred ecccccchhHHHHHHHHhcCCCC-----CcccCCcccCcCCC
Q 043456 390 LNSTLTATERTICCILENYQKED-----GVEVPEVLQPFMGG 426 (447)
Q Consensus 390 lngt~~ai~Rll~allE~~q~~~-----gi~iP~~L~py~~g 426 (447)
+|-|..++++.|.||-+...... .-++-..|++.++|
T Consensus 323 INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgG 364 (403)
T 4etp_A 323 INKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTG 364 (403)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTST
T ss_pred HHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCC
Confidence 67788889999999865432111 01344557777776
No 180
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.97 E-value=3.2e+02 Score=27.80 Aligned_cols=28 Identities=4% Similarity=0.072 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
.++.|+..+..+..++..|+..+..+..
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655443
No 181
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=31.94 E-value=1.8e+02 Score=22.73 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 30 DLVDEIISLDKKWRQLQFDVENYRKELNKINK 61 (447)
Q Consensus 30 ~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk 61 (447)
.++.+|..+..++..+..++..++.+...+..
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777777777766655544
No 182
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=31.66 E-value=22 Score=35.43 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=25.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCcccCCcccCcCCCceeecCC
Q 043456 392 STLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFK 433 (447)
Q Consensus 392 gt~~ai~Rll~allE~~q~~~gi~iP~~L~py~~g~~~i~~~ 433 (447)
|.+++++|++++|.|+ |+. |.|.+|+. +-++|..
T Consensus 304 Gf~igieRl~~~l~e~-----~~~-~~~~~p~~--v~i~~~~ 337 (421)
T 1h4v_B 304 GFAFGVERVALALEAE-----GFG-LPEEKGPD--LYLIPLT 337 (421)
T ss_pred EEeecHHHHHHHHHhc-----CcC-CCCCCCCe--EEEEECC
Confidence 7889999999999885 333 44568887 6677765
No 183
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.51 E-value=2.7e+02 Score=28.58 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 043456 15 PEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNK--IN--KQIAQLKLSGKDFSEMVTKTNEIKQQSADK 90 (447)
Q Consensus 15 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~--is--k~I~~~k~~~~~~~~l~~~~~~lk~~i~~l 90 (447)
.|.+.+.-..|. ++..++-.|..++.++..++-++.+.... .+ .+..+++. +..+++++++++.+++.++
T Consensus 69 ~~~~~~ld~~~r---~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~i~~l~~~~~~~ 142 (501)
T 1wle_A 69 LPGIISTWQELR---QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRA---RGREIRKQLTLLYPKEAQL 142 (501)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455555444442 23445555566666666665554433210 00 12222322 2355788899999999999
Q ss_pred HHHHHHHHHHH
Q 043456 91 EVEVREAWAAV 101 (447)
Q Consensus 91 e~~~~~~~~~l 101 (447)
++++..+--.|
T Consensus 143 ~~~l~~~l~~i 153 (501)
T 1wle_A 143 EEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHhC
Confidence 88877654443
No 184
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=31.26 E-value=84 Score=23.35 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 043456 51 NYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 51 ~Lr~~rN~isk~I~~~k~~~ 70 (447)
-|...++.|.+-|.++++++
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~ 43 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAG 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 35566777777788887765
No 185
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=31.15 E-value=1.6e+02 Score=33.64 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 81 NEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 81 ~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
..+..++..++.++..+++++..
T Consensus 916 ~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 186
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.94 E-value=1.5e+02 Score=29.74 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=25.1
Q ss_pred ecccccchhHHHHHHHHhcCCC--CCcccCCcccCcCCCc
Q 043456 390 LNSTLTATERTICCILENYQKE--DGVEVPEVLQPFMGGK 427 (447)
Q Consensus 390 lngt~~ai~Rll~allE~~q~~--~gi~iP~~L~py~~g~ 427 (447)
+|-|..+++++|.||.++..-- ..-++-..|++.+||.
T Consensus 311 INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGn 350 (412)
T 3u06_A 311 INRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGN 350 (412)
T ss_dssp TTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTT
T ss_pred HhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCC
Confidence 7888889999999998642210 0123445678888773
No 187
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=30.93 E-value=97 Score=30.64 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred chhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---ChhHHHHH
Q 043456 3 DINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGK---DFSEMVTK 79 (447)
Q Consensus 3 Dik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~---~~~~l~~~ 79 (447)
|+..+. ...+.+.+.+..=++-.| .+...++-.++..+...++..+.-++.+..-.....-..+ |.+-
T Consensus 18 ~l~~~~----~r~~el~~~l~~p~~~~d-~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~---- 88 (371)
T 1zbt_A 18 QLQAVE----DRYEELGELLSDPDVVSD-TKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPEL---- 88 (371)
T ss_dssp HHHHHH----HHHHHC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHH----
T ss_pred hHHHHH----HHHHHHHHHhcCCcchhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCCCCceEE
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSNDEANNAIV 128 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~vP~g~~e~~~~~i 128 (447)
...++++++.+++++..++.+|..++ +|.|++++.|.++
T Consensus 89 ~~~a~~e~~~l~~~l~~le~~l~~lL----------lp~~~~D~~nail 127 (371)
T 1zbt_A 89 EEMAKEELKNSKVAKEEYEEKLRFLL----------LPKDPNDDKNIIL 127 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT----------SCCCTTTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCCCCcccceEE
No 188
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.76 E-value=1.8e+02 Score=22.16 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
|..+.+.++..++.-+.+++.+..+++.+
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666665544
No 189
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.41 E-value=1.6e+02 Score=22.48 Aligned_cols=10 Identities=0% Similarity=0.136 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 043456 76 MVTKTNEIKQ 85 (447)
Q Consensus 76 l~~~~~~lk~ 85 (447)
+..+++.+.+
T Consensus 63 l~~~~~~lae 72 (79)
T 2zxx_A 63 VAEHVQYMAE 72 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 190
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.38 E-value=1.8e+02 Score=22.01 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
++.+...+..-...++..+.++++++
T Consensus 49 l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 49 LQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555443
No 191
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.17 E-value=1.6e+02 Score=22.80 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
..|.++-..|+.+|..|+.++..|. .++..+|.
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr----~ll~~~p~ 78 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLR----NLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCcH
Confidence 3455555566666666665555443 44555554
No 192
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.98 E-value=1.6e+02 Score=23.64 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 34 EIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 34 ~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
.+.++.+++|+....--+|-++++.+.=+|.-+|.
T Consensus 3 sL~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD 37 (103)
T 4h22_A 3 SLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKD 37 (103)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544443
No 193
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.66 E-value=3e+02 Score=26.10 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
+.+....+....+.+++.++.++..++.++...-..+-+
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556677777888888888888888887777666644
No 194
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.38 E-value=2.9e+02 Score=24.88 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDF 73 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~ 73 (447)
+.+.++.++...+..+.+.|+...|.+.+++.+..+++++.
T Consensus 132 ~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 132 DTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777888888888888887776665444
No 195
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.37 E-value=1.7e+02 Score=22.30 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043456 87 SADKEVEVREAWAAVKA 103 (447)
Q Consensus 87 i~~le~~~~~~~~~l~~ 103 (447)
..+|..++..+++++.+
T Consensus 54 n~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 54 NRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 196
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=29.22 E-value=1.8e+02 Score=21.88 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 47 FDVENYRKELNKINKQIAQLKL--SGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~k~--~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
...++++...+.+...+..+.. .|...+...+.-.+++..+..+...+..+...|...+
T Consensus 22 ~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a 82 (98)
T 3gwk_C 22 AGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVA 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554433 3444445555566666666666666666666665543
No 197
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=28.97 E-value=1.8e+02 Score=21.63 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 45 LQFDVENYRKELNKINKQIAQLKLS--GKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~k~~--~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~ 105 (447)
+....++++...+.+...+..+... |.......+.-.+++..+..+...+..+...|...+
T Consensus 21 ~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A 83 (93)
T 4ioe_A 21 FKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666555331 222334445555555566666666666666555544
No 198
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=28.64 E-value=1e+02 Score=24.26 Aligned_cols=36 Identities=8% Similarity=-0.115 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSV 116 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~~v 116 (447)
++++|.++|..|-.+-..-|.++.++ .=||...-.-
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL--GGpdY~~~~~ 88 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL--GGPDYGKVSG 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TSCCSTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCccccCC
Confidence 78999999999988888888888643 3466544333
No 199
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.61 E-value=2.4e+02 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 35 IISLDKKWRQLQFDVENYRKELNK 58 (447)
Q Consensus 35 i~~ld~~~r~l~~~~~~Lr~~rN~ 58 (447)
+..++++.+.+...+....+.|+.
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~e 38 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKE 38 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333
No 200
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.48 E-value=95 Score=22.38 Aligned_cols=23 Identities=4% Similarity=0.060 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
..++.+|..+-.+|+.++..++.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 201
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.06 E-value=1.1e+02 Score=29.68 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=5.8
Q ss_pred CCCcccCCcc
Q 043456 411 EDGVEVPEVL 420 (447)
Q Consensus 411 ~~gi~iP~~L 420 (447)
.+||.|-.|-
T Consensus 284 ~~GI~W~~w~ 293 (323)
T 1lwu_C 284 DDGIIWATWH 293 (323)
T ss_dssp CCSSEEGGGS
T ss_pred CCceEEccCC
Confidence 3567666553
No 202
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.88 E-value=2.3e+02 Score=36.15 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL 68 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~ 68 (447)
+++.++.++..+.+.++++++++.+++.++|++++.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666655543
No 203
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.82 E-value=2.1e+02 Score=22.75 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
+++..++.++++|+.+++.+.+++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666544
No 204
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=27.67 E-value=1.5e+02 Score=27.89 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=51.5
Q ss_pred cCeEeeccccccccCccCCCCCCcCceeeeeeeeeeEEEEecCCcchHHHHHHHHHHHHHHHHHHcCCc-----EEEEEe
Q 043456 254 LPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP-----YQVVAI 328 (447)
Q Consensus 254 LPlrl~~~s~~fR~E~~~~G~~~~GL~R~~qF~k~e~~~f~~~e~~~s~~~~~~~~~~~~~i~~~Lgl~-----yr~v~~ 328 (447)
=|.+.+=+.+|.|.--|-+|....-|.+=+||. ++.+|.- ..+.+.|.+-++.|||. .|-|+=
T Consensus 58 epw~~AYVqPsRRP~DGRYGeNPNRLq~y~QfQ-----VilKPsP-------~niQeLYL~SL~alGid~~~HDIRFVED 125 (298)
T 1j5w_A 58 GPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQ-----VIIKPSP-------ENSQELYLESLEYLGINLKEHDIRFVED 125 (298)
T ss_dssp SCEEEEEEEEEECCC-----CCTTCCSEEEEEE-----EEEESCC-------SSHHHHHHHHHHHTTCCTTTSCEEEEEE
T ss_pred CcceeeeeccCCCCCCCCcCCCchhhhhheeeE-----EEECCCC-------ccHHHHHHHHHHHhCCCcccCCceeecc
Confidence 488999999999999999997777788888884 3456643 22344556677889884 555542
Q ss_pred c--CCCCCcccccccceeeeecCCCceeeEEEe
Q 043456 329 V--SGALNDAAAKKLDLEAWFPASQTYRELVSC 359 (447)
Q Consensus 329 ~--t~dlg~~a~~~~diE~w~p~~~~~~ev~s~ 359 (447)
. +-.+|++ -.--|||+.+ .||+..
T Consensus 126 nWEsPTLGAw---GLGWEVWldG----MEITQF 151 (298)
T 1j5w_A 126 NWESPTLGAW---GVGWEVWLDG----MEITQF 151 (298)
T ss_dssp CCEEGGGTEE---EEEEEEEETT----EEEEEE
T ss_pred CCCCCccccc---cccceeeEcc----eeeehh
Confidence 1 1112322 2344788766 466654
No 205
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.39 E-value=2.2e+02 Score=24.47 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043456 87 SADKEVEVREAWAAVKAKL 105 (447)
Q Consensus 87 i~~le~~~~~~~~~l~~~~ 105 (447)
...++.++..|...|.+.+
T Consensus 81 ~~~ie~ElEeLTasLFeEA 99 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLFDEA 99 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444545544444433
No 206
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.34 E-value=2.8e+02 Score=23.44 Aligned_cols=79 Identities=6% Similarity=0.103 Sum_probs=45.0
Q ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 18 IRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 18 v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~ 97 (447)
.++.+.+|.... =+.+-.|..+.+..+...+..-.+.-.+++++...-.+ .+....++...-..+..|+.++..+
T Consensus 39 ~~k~lE~r~~~d--eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~d---LeraeeRae~aE~k~~eLEeeL~~~ 113 (147)
T 2b9c_A 39 GMKVIESRAQKD--EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD---LERAEERAELSEGKCAELEEELKTV 113 (147)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554322 36788888888888888888888888888877654321 1222223333334444444444444
Q ss_pred HHHH
Q 043456 98 WAAV 101 (447)
Q Consensus 98 ~~~l 101 (447)
.+.+
T Consensus 114 ~~nl 117 (147)
T 2b9c_A 114 TNNL 117 (147)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 207
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.18 E-value=94 Score=21.39 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 043456 51 NYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 51 ~Lr~~rN~isk~I~~~k~~~ 70 (447)
-|...++.|..=|.++++++
T Consensus 5 PL~EQ~~~I~~~I~qAk~~r 24 (48)
T 3v1a_A 5 PLAQQIKNIHSFIHQAKAAG 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35666777777788887765
No 208
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.16 E-value=2.1e+02 Score=28.58 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
++..+|+++.+++.++++.+++++..+-..+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999988877666
No 209
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.14 E-value=2.6e+02 Score=22.87 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
+++++|+.+|+.|+.++.....++..+-..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 358888888888888888888887776544
No 210
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=27.10 E-value=2.4e+02 Score=22.52 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043456 47 FDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~ 66 (447)
.++.......|+|+..|+..
T Consensus 13 Dei~E~~e~~~EI~e~Ls~~ 32 (104)
T 3um3_B 13 QDIADQQELAEEISTAISKP 32 (104)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44444555566666666553
No 211
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.60 E-value=1.7e+02 Score=29.21 Aligned_cols=28 Identities=0% Similarity=-0.023 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 79 KTNEIKQQSADKEVEVREAWAAVKAKLE 106 (447)
Q Consensus 79 ~~~~lk~~i~~le~~~~~~~~~l~~~~~ 106 (447)
++..|...+..++.++..+++++.++..
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555543
No 212
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.42 E-value=1.9e+02 Score=24.49 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
++.+.+..|.++++++++++..+..++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777777665443
No 213
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.92 E-value=1.8e+02 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+|-.++..|..+-..|..++..|.+++
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 214
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=25.91 E-value=73 Score=31.08 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEecccch
Q 043456 306 EEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTD 364 (447)
Q Consensus 306 ~~~~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~~D 364 (447)
.+.-..+..+++.+|+|.|.|.- ...+ +=.|+|.|+.++|.-|-.|.+..|
T Consensus 185 ~e~A~lF~~llRalGi~aR~V~~-------~~~H-~W~EV~~~~~~rWv~vDp~~~~id 235 (335)
T 1x3z_A 185 GEWCNLFTLILKSFGLDVRYVWN-------REDH-VWCEYFSNFLNRWVHVDSCEQSFD 235 (335)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEE-------TTTE-EEEEEEETTTTEEEEEETTTTEES
T ss_pred HHHHHHHHHHHHHCCCCeEEEec-------CCCc-EEEEEEECCCCCEEEECCCCCccC
Confidence 45566777888999999999842 1222 237999999999998887765433
No 215
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.83 E-value=2.3e+02 Score=21.87 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Q 043456 74 SEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHD 114 (447)
Q Consensus 74 ~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN~~h~ 114 (447)
.++..++..|..+=..|..++..|+.++..+-..|=.+|.+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 34556677777777777777777777777777766666554
No 216
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.83 E-value=2.4e+02 Score=22.14 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~ 102 (447)
-.++..|...++.++.++..+++++.
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444
No 217
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.25 E-value=1.3e+02 Score=30.42 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC----hhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 47 FDVENYRKELNKINKQIAQLKLSGKD----FSEMV---TKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 47 ~~~~~Lr~~rN~isk~I~~~k~~~~~----~~~l~---~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
.++-+|-.++.++..++..+...... +..++ ++..+|+++.++|.++++.+++++..+-..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444332211 11121 2245788888888888888888888776666
No 218
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.23 E-value=1.9e+02 Score=20.66 Aligned_cols=24 Identities=8% Similarity=0.298 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
|-.++..|..+-..|..++..|.+
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 219
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.98 E-value=2.2e+02 Score=21.28 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 38 LDKKWRQLQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 38 ld~~~r~l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
|..+.+.++..++.-+.+++....+++.+
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666665555443
No 220
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.77 E-value=3e+02 Score=27.30 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 78 TKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 78 ~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
++++++..+|.+|+.++..++.++.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777788888888887777776653
No 221
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=24.22 E-value=1.1e+02 Score=29.40 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEeccc
Q 043456 309 IKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNC 362 (447)
Q Consensus 309 ~~~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~ 362 (447)
-.....+++.+|||.|.|.-- ..+- =.|+|+|+..+|.-+-.|.+.
T Consensus 147 A~lf~al~Ra~GIpAR~V~Gy-------~~Ha-W~Evy~~g~~gWv~~Dpt~~~ 192 (295)
T 2f4m_A 147 ANCFTLCCRALGFEARYVWDY-------TDHV-WTEVYSPSQQRWLHCDACEDV 192 (295)
T ss_dssp HHHHHHHHHHTTCCEEEEEET-------TTEE-EEEEEETTTTEEEEEETTTTE
T ss_pred HHHHHHHHHHCCCCEEEEcCC-------CCEE-EEEEEECCCCeEEEEeCCcCc
Confidence 345566789999999987532 2232 269999998899988777654
No 222
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.21 E-value=2.8e+02 Score=22.25 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 55 ELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 55 ~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+++.++..+..+.-++-+.++|.+..++|=+.|..||++-..++..+
T Consensus 26 KkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 26 KKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45556655555544454556777778888788888877777776654
No 223
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.18 E-value=1.9e+02 Score=20.21 Aligned_cols=20 Identities=5% Similarity=0.048 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043456 83 IKQQSADKEVEVREAWAAVK 102 (447)
Q Consensus 83 lk~~i~~le~~~~~~~~~l~ 102 (447)
++.+++..+.+.....++|+
T Consensus 30 l~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 30 ARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444443
No 224
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=23.92 E-value=1.3e+02 Score=22.48 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 043456 80 TNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110 (447)
Q Consensus 80 ~~~lk~~i~~le~~~~~~~~~l~~~~~~lPN 110 (447)
+++||++|+.|+....+..-+|-++.--||+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~ 35 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPT 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence 3456666666666666666666666655554
No 225
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=23.87 E-value=4.7e+02 Score=26.59 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhC--CChhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 043456 15 PEKIRESQRRRF--ASVDLVDEIISLDK----KWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSA 88 (447)
Q Consensus 15 ~e~v~~~l~~R~--~~~~~vd~i~~ld~----~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~ 88 (447)
.|.-+--+..|+ ++.+ |+......+ +|..+.++++..+++.+.+.+.|.++-. ..+....+.+...+.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~-ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqa---qvSa~t~e~k~A~d~l~ 394 (602)
T 1cii_A 319 LDYKRNILNDRNPVVTED-VEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARN---NLSARTNEQKHANDALN 394 (602)
T ss_dssp HHHHHHTSCCCCSCCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcCCCCcchhh-hhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 043456 89 DKEVEVREAWAAV 101 (447)
Q Consensus 89 ~le~~~~~~~~~l 101 (447)
.+.++-..++.++
T Consensus 395 a~~kek~~~~n~~ 407 (602)
T 1cii_A 395 ALLKEKENIRNQL 407 (602)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
No 226
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=23.23 E-value=37 Score=35.02 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043456 48 DVENYRKELNKINKQIAQ 65 (447)
Q Consensus 48 ~~~~Lr~~rN~isk~I~~ 65 (447)
+.+.|+++..++.++|..
T Consensus 431 e~~kl~~E~~~l~~~i~~ 448 (496)
T 2nov_A 431 DVVVLQEEEAELREKIAM 448 (496)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 227
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=23.17 E-value=1.3e+02 Score=23.70 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 32 VDEIISLDKKWRQLQFDVENYRKE 55 (447)
Q Consensus 32 vd~i~~ld~~~r~l~~~~~~Lr~~ 55 (447)
||++.+.+.+.+.....+.-|++.
T Consensus 25 id~lke~~~q~~~~~E~i~vLk~Q 48 (94)
T 3jsv_C 25 IDKLKEEAEQHKIVMETVPVLKAQ 48 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444443
No 228
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.03 E-value=3.3e+02 Score=30.99 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 75 EMVTKTNEIKQQSADKEVEVREAWAAVKAK 104 (447)
Q Consensus 75 ~l~~~~~~lk~~i~~le~~~~~~~~~l~~~ 104 (447)
.+..+..++.+++++++.++..+++++..+
T Consensus 917 ~l~~~~~~Le~~l~ele~elee~ee~l~el 946 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEARIEEEEERSQQL 946 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665555554443
No 229
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.99 E-value=1.7e+02 Score=19.42 Aligned_cols=24 Identities=4% Similarity=0.221 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
|-++++++.....+||+.+..++.
T Consensus 8 LE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 230
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.53 E-value=78 Score=24.51 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 72 DFSEMVTKTNEIKQQSADKEVEVREAWAAV 101 (447)
Q Consensus 72 ~~~~l~~~~~~lk~~i~~le~~~~~~~~~l 101 (447)
+.+.|.++++.|+.++..|+.++.+++.++
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 231
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.45 E-value=2.8e+02 Score=21.66 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 77 VTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 77 ~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
-.++..|+..++.++.++..+++++..
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 232
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.41 E-value=2e+02 Score=25.54 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043456 42 WRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVV 108 (447)
Q Consensus 42 ~r~l~~~~~~Lr~~rN~isk~I~~~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~~~~~l 108 (447)
.+.++.++++--.....+..++..+.. ..+..-.+++.|+++++.++.+......++....-.+
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~---ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSE---KLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp ------------CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
No 233
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=22.35 E-value=1.2e+02 Score=28.77 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCcEEEEEecCCCCCcccccccceeeeecCCCceeeEEEeccc
Q 043456 311 NSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNC 362 (447)
Q Consensus 311 ~~~~i~~~Lgl~yr~v~~~t~dlg~~a~~~~diE~w~p~~~~~~ev~s~sn~ 362 (447)
....+++.+|||-|.|.--....+....|-+ .|+|+++ +|.-+--..++
T Consensus 187 l~val~Ra~GIPAR~VsGy~~~~~~~~~HAW-~Evyl~g--gWv~~DpT~~~ 235 (293)
T 3isr_A 187 LGIALCRALSIPARYFTGYAFKLNPPDFHAC-FEAYIGG--NWIIFDATRLV 235 (293)
T ss_dssp HHHHHHHHTTCCEEEEEEEETTCSSCCEEEE-EEEEETT--EEEEECTTCCS
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCeEEE-EEEEECC--cEEEEECCCCC
Confidence 4456789999999987654444434445554 5899987 78777655554
No 234
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.34 E-value=4.1e+02 Score=23.54 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 043456 82 EIKQQSADKEV 92 (447)
Q Consensus 82 ~lk~~i~~le~ 92 (447)
.++..|..||.
T Consensus 106 ~l~~~ireLEq 116 (189)
T 2v71_A 106 QLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 235
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.01 E-value=1.4e+02 Score=32.25 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=23.9
Q ss_pred HHHHHhhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043456 19 RESQRRRF-ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67 (447)
Q Consensus 19 ~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k 67 (447)
+++|..|+ ++..-.+.|+++- .+|-...+.+.|+.|..++.++|+.++
T Consensus 374 k~~L~~~f~lse~QA~aIL~mr-L~rLt~le~~kl~~E~~eL~~~i~~l~ 422 (716)
T 1zvu_A 374 KPALMSRFGLTETQAEAILELK-LRHLAKLEEMKIRGEQSELEKERDQLQ 422 (716)
T ss_dssp HHHHHHSTTCCTTHHHHHHTCC-GGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHhhH-HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55566663 3333345555543 222334455556666666666555543
No 236
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=21.92 E-value=2.8e+02 Score=21.40 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLS 69 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~ 69 (447)
+.+.++-++-..+-.++=.|-++|-.++++|+..|+.
T Consensus 17 ~~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 17 TTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666677777788888999999999999998874
No 237
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.87 E-value=3.3e+02 Score=24.92 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=29.9
Q ss_pred chhhhhcccCCCHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 3 DINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQ 65 (447)
Q Consensus 3 Dik~ir~~~~~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~ 65 (447)
.+++.+ .+-+.+++.+..| +..+.++.-.+..++++.+.++|..++.+++
T Consensus 154 SL~f~~----asde~Ik~yLa~R---------~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~ 203 (228)
T 3q0x_A 154 TLAFRP----GNDSVVKQFLAFR---------LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQ 203 (228)
T ss_dssp EEEEEE----CCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeec----CCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 6667777777766 2223334445566666777777766665544
No 238
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=21.83 E-value=63 Score=29.03 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEe---cCCccC
Q 043456 175 RLNQALINFGLDFLEKKSYTLL---HTPFFM 202 (447)
Q Consensus 175 ~l~~aL~~~~~~~~~~~G~~~v---~~P~l~ 202 (447)
...+.|.+-+...|.++||+++ ..|+|+
T Consensus 56 l~~kRI~~aV~~~L~akG~~~v~~~~~pDll 86 (197)
T 4f54_A 56 EGAEQILAAYTENMEAXGYQPAADXESADLG 86 (197)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECSSTTTCSEE
T ss_pred HHHHHHHHHHHHHHHhcCceecCCCCCCCEE
Confidence 3577888888889999999999 567764
No 239
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.64 E-value=6e+02 Score=25.23 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=4.6
Q ss_pred CCcccCCc
Q 043456 412 DGVEVPEV 419 (447)
Q Consensus 412 ~gi~iP~~ 419 (447)
+||.|-.|
T Consensus 365 ~GI~W~~w 372 (409)
T 1m1j_C 365 NGIIWATW 372 (409)
T ss_dssp CSSEETTT
T ss_pred CceEEccC
Confidence 46666554
No 240
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=21.62 E-value=2e+02 Score=22.44 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043456 33 DEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSG 70 (447)
Q Consensus 33 d~i~~ld~~~r~l~~~~~~Lr~~rN~isk~I~~~k~~~ 70 (447)
+.+..+-++--.+-.++=.|-++|-.++++|+..|+.+
T Consensus 8 ~~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~~ 45 (101)
T 3ret_A 8 TGLADIREAIDRIDLDIVQALGRRMDYVKAASRFEASE 45 (101)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34555555566666777788999999999999988763
No 241
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.46 E-value=2.1e+02 Score=19.83 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREA 97 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~ 97 (447)
|.+-.+.-+++|..|.+++..+
T Consensus 28 L~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 28 LMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555555443
No 242
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.05 E-value=1.9e+02 Score=25.29 Aligned_cols=23 Identities=4% Similarity=-0.091 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 043456 85 QQSADKEVEVREAWAAVKAKLEV 107 (447)
Q Consensus 85 ~~i~~le~~~~~~~~~l~~~~~~ 107 (447)
++|.+|-+++.++..++......
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 243
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.03 E-value=1.6e+02 Score=18.49 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 45 LQFDVENYRKELNKINKQIAQL 66 (447)
Q Consensus 45 l~~~~~~Lr~~rN~isk~I~~~ 66 (447)
+..++++|..+...+..++..+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555555555555544443
No 244
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.01 E-value=1.4e+02 Score=17.79 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 043456 82 EIKQQSADKEVEVREA 97 (447)
Q Consensus 82 ~lk~~i~~le~~~~~~ 97 (447)
.|..+++.||+++..+
T Consensus 12 alesklqalekkleal 27 (31)
T 3ljm_A 12 ALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 245
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=21.00 E-value=1.6e+02 Score=25.47 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 42 WRQLQFDVENYRKELNKINKQIAQ-LKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKA 103 (447)
Q Consensus 42 ~r~l~~~~~~Lr~~rN~isk~I~~-~k~~~~~~~~l~~~~~~lk~~i~~le~~~~~~~~~l~~ 103 (447)
+++.|..++++-.+.|.+..+... .-.-+.+.+++..++..|.+.+...-..++....+|.-
T Consensus 38 ~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAELLV 100 (174)
T 3ku3_B 38 KESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLV 100 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 467788888888888887654321 11223445556666666666666655555555554443
No 246
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.59 E-value=2.8e+02 Score=20.92 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVRE 96 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~ 96 (447)
|.++-..|+.+|..|+.++..
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 247
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.12 E-value=2.5e+02 Score=20.10 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043456 76 MVTKTNEIKQQSADKEVEVREAWA 99 (447)
Q Consensus 76 l~~~~~~lk~~i~~le~~~~~~~~ 99 (447)
|..+-.+|+.++..|+.+...|.+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444443
No 248
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.02 E-value=1.7e+02 Score=22.12 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043456 36 ISLDKKWRQLQFDVENYRKE 55 (447)
Q Consensus 36 ~~ld~~~r~l~~~~~~Lr~~ 55 (447)
..|.++-+.+..+.++|+.+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 249
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=20.02 E-value=24 Score=27.94 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043456 40 KKWRQLQFDVENYRKELNKINK 61 (447)
Q Consensus 40 ~~~r~l~~~~~~Lr~~rN~isk 61 (447)
.+.++++.++-+|+.+.|.+|-
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSa 51 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISA 51 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhccch
Confidence 4566777777777777776664
Done!