RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043456
(447 letters)
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 721 bits (1864), Expect = 0.0
Identities = 243/461 (52%), Positives = 316/461 (68%), Gaps = 17/461 (3%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
MLDIN F EKGG PE I+ SQ++R SV+LVDEII+ K+W +L+FD++ + K+LN +
Sbjct: 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60
Query: 61 KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120
K+I + + +D +++ + ++ + + + EA +++K+ VGN+VH+SV S
Sbjct: 61 KEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQ 120
Query: 121 DEANNAIVRTWGEKR-----------TEPKLKNHVELVELLGIADLKKGADIAGGRGFYL 169
DE NN +VRTW + P +H E++ L D ++G I G RG++L
Sbjct: 121 DEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGYDPERGVRIVGHRGYFL 180
Query: 170 KGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDD 229
+ GV LNQALIN+GL FL K Y L P M KEVMAK AQL+QFDEELYKV D+
Sbjct: 181 RNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDE 240
Query: 230 KYLIATAEQPLCAYHIDDWIHP--SELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEK 287
KYLIAT+EQP+ AYH +W +LP+RYAGYSSCFR+EAGSHG+D GIFRVH FEK
Sbjct: 241 KYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEK 300
Query: 288 VEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWF 347
+EQF +T P SW+ + MI SEEFYQ L +PY+VV IVSG LN+AAAKK DLEAWF
Sbjct: 301 IEQFVLTEPE--KSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWF 358
Query: 348 PASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILEN 407
P Q Y+ELVSCSNCTDYQSR LEIR G K+ N+Q K+YVH LNSTL+ATERTICCILEN
Sbjct: 359 PFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILEN 418
Query: 408 YQKEDGVEVPEVLQPFMGGKT-FLPFKAKPAPEAKGKKSKA 447
YQKEDG+ +PEVL+ ++ G+ F+P+ K P+ KA
Sbjct: 419 YQKEDGLVIPEVLRKYIPGEPEFIPY-IKELPKNTTSVKKA 458
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 691 bits (1785), Expect = 0.0
Identities = 221/480 (46%), Positives = 296/480 (61%), Gaps = 37/480 (7%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
+LDI LFR+E G IRESQRRRFA D+VD II DKKWR+ QF E +K +N +
Sbjct: 7 VLDIQLFRDETG--ANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICS 64
Query: 61 KQIAQLKLSGKD-----------------------------FSEMVTKTNEIKQQSADKE 91
K + K + + ++ + ++ Q A
Sbjct: 65 KAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLA 124
Query: 92 VEVREAWAAVKAKLEVVGNLVHDSVPVSNDE-ANNAIVRTWGEKRTEPKLKNHVELVELL 150
E ++ + VGN++H+SVP++ DE N +VRT+G K NHV ++E L
Sbjct: 125 KEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRAK-LNHVSIMERL 183
Query: 151 GIADLKKG-ADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAK 209
G+ D K +AGGR + LKG V+L AL+++ LDFL K+ YT + PFF+ ++VM +
Sbjct: 184 GMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGE 243
Query: 210 CAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEA 269
AQL+QFDEELY+V+G+GD KYLIAT+E P+ AYH W + P++YAG S+CFRKEA
Sbjct: 244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEA 303
Query: 270 GSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIV 329
G+HGRDTLGIFRVHQF+K+EQF + SP +SW E+MI SEEF + L +PY+VV I
Sbjct: 304 GAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNIC 363
Query: 330 SGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQK---KSNEQTKQY 386
SGALN+AAAKK DLEAWFPAS +RELVSCSNCTDYQS+ + RYG + + K+Y
Sbjct: 364 SGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEY 423
Query: 387 VHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKTFLPFKAKPAPEAKGKKSK 446
H+LN TL A RT+CCI ENYQ E+GV +P+VL+P+M G + F+ E
Sbjct: 424 CHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFENNAQAEGTTPDKG 483
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 688 bits (1777), Expect = 0.0
Identities = 235/485 (48%), Positives = 307/485 (63%), Gaps = 40/485 (8%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
+LD++LFR +KGG P IRE+Q +RF LVD+++ D +WR+ +F +N K N +
Sbjct: 2 VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCS 61
Query: 61 KQIAQLKLSGKD--------------------------FSEMVTKTNEIKQQSADKEVEV 94
K I + + S++ I + + E
Sbjct: 62 KTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAER 121
Query: 95 REAWAAVKAKLEVVGNLVHDSVPVSNDE-ANNAIVRTWGEKRTEPKLKNHVELVELLGIA 153
+ A L +GNL+H SVP+SNDE +N + R WG+ K +HV+LV ++
Sbjct: 122 IKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTV-RKKYSHVDLVVMVDGF 180
Query: 154 DLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQL 213
+ +KGA +AG RG++LKG V L QALI + L L + Y ++TPFFMRKEVM + AQL
Sbjct: 181 EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL 240
Query: 214 AQFDEELYKVTGEG---------DDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSC 264
+QFDEELYKV G+G D+KYLIAT+EQP+ A H D+W+ P +LPI+YAG S+C
Sbjct: 241 SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC 300
Query: 265 FRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQ 324
FR+E GSHGRDT GIFRVHQFEK+EQF +SP+ N SW+M EEMI +EEFYQ L IPY
Sbjct: 301 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH 360
Query: 325 VVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTK 384
+V IVSG+LN AA+KKLDLEAWFP S +RELVSCSNCTDYQ+RRL IRYGQ K
Sbjct: 361 IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV 420
Query: 385 QYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFM--GGKTFLPF-KAKPAPEAK 441
++VH+LN+T+ AT RTIC ILENYQ E G+ VPE L+ FM G + +PF K P +
Sbjct: 421 EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP 480
Query: 442 GKKSK 446
KK K
Sbjct: 481 SKKQK 485
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 571 bits (1475), Expect = 0.0
Identities = 189/460 (41%), Positives = 267/460 (58%), Gaps = 34/460 (7%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDL--VDEIISLDKKWRQLQFDVENYRKELNK 58
MLDI L RE PE ++ +R + VDEI+ LD +WR ++ R E NK
Sbjct: 1 MLDIKLIREN----PELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNK 56
Query: 59 INKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPV 118
I +I + + G+ E++ K+ EI ++ + E EV E + L + N+ H SVPV
Sbjct: 57 IAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPV 116
Query: 119 SNDEANNAIVRTWGEKRTEP---------------------KLKNHVELVELLGIADLKK 157
DE +N +R WG+ R K K HV+L+E+LG AD +
Sbjct: 117 GKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFAR 176
Query: 158 GADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFD 217
A ++G R +YL + V L+ ALI F LD L +K +T + P+ +R+ V F+
Sbjct: 177 AAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE 236
Query: 218 EELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTL 277
+ +YKV E +D YLI TAE PL H ++ + +LP+ Y G S CFRKEAG+ G+DT
Sbjct: 237 DVIYKV--EDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTK 294
Query: 278 GIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAA 337
GIFRVHQF KVEQF + P +SW+ HE++I+N+EE +Q L+IPY+VV I +G L A
Sbjct: 295 GIFRVHQFHKVEQFVYSRP--EESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVA 352
Query: 338 AKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTAT 397
AKK D+EAW P +RE+VS SNCTD+Q+RRL IR+ + ++ +YVH LNST AT
Sbjct: 353 AKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRF--RDRTDEKPRYVHTLNSTAIAT 410
Query: 398 ERTICCILENYQKEDG-VEVPEVLQPFMGGKTFLPFKAKP 436
R I ILEN+Q+EDG V +P+VL + G K +P + K
Sbjct: 411 SRAIVAILENHQEEDGTVRIPKVLWKYTGFKEIVPVEKKE 450
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 477 bits (1230), Expect = e-166
Identities = 124/452 (27%), Positives = 209/452 (46%), Gaps = 27/452 (5%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDL--VDEIISLDKKWRQLQFDVENYRKELNK 58
+LD+ PE + R + + IIS ++ RQL+ + + +E
Sbjct: 40 LLDMESLCAY----PEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEA 95
Query: 59 INKQIAQLKLSGKD--------FSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGN 110
+ + + L ++ + + + + EI++Q + + + + N
Sbjct: 96 VTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPN 155
Query: 111 LVHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGF 167
H VPV DE+ ++ G+K +P+ H+E+ E L I K+ + ++G R +
Sbjct: 156 QTHPDVPVG-DESQARVLHVVGDKPAFSFQPR--GHLEIAEKLDIIRQKRLSHVSGHRSY 212
Query: 168 YLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVT--G 225
YL+G G L L+NF L+ L + +T + P +R V C
Sbjct: 213 YLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS 272
Query: 226 EGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQF 285
+D L TAE L Y +D + +LPIR S+C+R E + G++ G++RVH F
Sbjct: 273 RFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT-GKEPWGLYRVHHF 331
Query: 286 EKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEA 345
KVE F +T P S ++ EE + E L + ++V+ + + L A +K D+EA
Sbjct: 332 TKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEA 391
Query: 346 WFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCIL 405
W P + E+ S SNCTD+QSRRL I + ++ Q+ H +N+T A R + +L
Sbjct: 392 WMPGRGRFGEVTSASNCTDFQSRRLHIMF---QTEAGELQFAHTVNATGCAVPRLLIALL 448
Query: 406 ENYQKEDG-VEVPEVLQPFMGGKTFLPFKAKP 436
E+YQ++DG V VP LQP++G P
Sbjct: 449 ESYQQKDGSVLVPPALQPYLGTDRITTPTHVP 480
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 473 bits (1219), Expect = e-166
Identities = 129/435 (29%), Positives = 235/435 (54%), Gaps = 20/435 (4%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
M+D+ R+E PE + R + ++DL + +++LD++ ++L+ ++ + E N++
Sbjct: 1 MVDLKRLRQE----PEVFHRAIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVA 55
Query: 61 KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVSN 120
K++ + ++ ++ + + +++ E +RE A ++A L V PV
Sbjct: 56 KRVPKAP--PEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGG 113
Query: 121 DEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLN 177
+EAN ++ G P +HV L+E G + + + ++G R + LKGD
Sbjct: 114 EEAN-REIKRVGGPPEFSFPPL--DHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYE 169
Query: 178 QALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAE 237
AL+ F +DF+ ++ + + P + R++ + ++++ + D YL TAE
Sbjct: 170 LALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--AETDLYLTGTAE 227
Query: 238 QPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPN 297
L A H + + LP+RYAGY+ FR EAGS G+D G+ RVHQF KVEQ+ +T +
Sbjct: 228 VVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEAS 287
Query: 298 GNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELV 357
S +E+++N+EE ++L++PY++V + +G + +++D+E + P+ YRE
Sbjct: 288 LEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETH 347
Query: 358 SCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VEV 416
SCS D+Q+RR +RY + E +Y + LN+T AT R + +LEN+Q +DG V V
Sbjct: 348 SCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRV 404
Query: 417 PEVLQPFMGGKTFLP 431
P+ L P+MG + P
Sbjct: 405 PQALIPYMGKEVLEP 419
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 438 bits (1129), Expect = e-152
Identities = 185/436 (42%), Positives = 266/436 (61%), Gaps = 17/436 (3%)
Query: 1 MLDINLFREEKGGIPEKIRES-QRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKI 59
M+DINL RE+ P+ ++E R V LVD+++ LDK+ R++ +E R E NK+
Sbjct: 1 MIDINLIREK----PDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKL 56
Query: 60 NKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVPVS 119
+K+I +LK GKD +E+ + E+K++ E E+R+ +K L + NL H SVPV
Sbjct: 57 SKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVG 116
Query: 120 NDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRL 176
DE +N VR WGE R EPK H E+ E LGI D K+GA ++G R + G G RL
Sbjct: 117 EDEKDNVEVRRWGEPRKFDFEPK--PHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARL 174
Query: 177 NQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATA 236
+ALINF LD KK Y + P ++ E++ QL +F+E+LYK E D+ YLI TA
Sbjct: 175 ERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC--ERDNLYLIPTA 232
Query: 237 EQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSP 296
E PL + ++ + LPI Y+ C+R+EAG++G+D GI R HQF+KVE I P
Sbjct: 233 EVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHP 292
Query: 297 NGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYREL 356
+ S+D E+++K++EE Q+L +PY+VV + +G L +AAK D+E WFP+ YRE+
Sbjct: 293 --DTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREI 350
Query: 357 VSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VE 415
SCSNC D+Q+RR+ R+ K S ++VH LN + A RT+ ILENYQ+EDG V
Sbjct: 351 SSCSNCEDFQARRMNTRF--KDSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQEDGSVV 408
Query: 416 VPEVLQPFMGGKTFLP 431
VPEVL+ ++G P
Sbjct: 409 VPEVLRDYVGTDVIRP 424
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 441 bits (1135), Expect = e-152
Identities = 119/444 (26%), Positives = 218/444 (49%), Gaps = 26/444 (5%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRR--------FASVDLVDEIIS-LDKKWRQLQFDVEN 51
L + + ++IR R F++ ++ D I + K +
Sbjct: 98 ALLLGESTTD----WKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYE 153
Query: 52 YRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNL 111
+ + + ++ ++++M+ + ++ + E + ++ ++A L V
Sbjct: 154 IVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLP 213
Query: 112 VHDSVPVSNDEANNAIVRTWGEKRT---EPKLKNHVELVELLGIADLKKGADIAGGRGFY 168
PV +E N ++ G P +HV L+E G + + + ++G R +
Sbjct: 214 PWPGAPVGGEE-ANREIKRVGGPPEFSFPPL--DHVALMEKNGWWE-PRISQVSGSRSYA 269
Query: 169 LKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGD 228
LKGD AL+ F +DF+ ++ + + P + R++ + ++++ +
Sbjct: 270 LKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--AET 327
Query: 229 DKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKV 288
D YL TAE L A H + + LP+RYAGY+ FR EAGS G+D G+ RVHQF KV
Sbjct: 328 DLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKV 387
Query: 289 EQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFP 348
EQ+ +T + S +E+++N+EE ++L++PY++V + +G + +++D+E + P
Sbjct: 388 EQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLP 447
Query: 349 ASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENY 408
+ YRE SCS D+Q+RR +RY + E +Y + LN+T AT R + +LEN+
Sbjct: 448 SEGRYRETHSCSALLDWQARRANLRY---RDPEGRVRYAYTLNNTALATPRILAMLLENH 504
Query: 409 QKEDG-VEVPEVLQPFMGGKTFLP 431
Q +DG V VP+ L P+MG + P
Sbjct: 505 QLQDGRVRVPQALIPYMGKEVLEP 528
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 224 bits (571), Expect = 8e-70
Identities = 44/331 (13%), Positives = 89/331 (26%), Gaps = 54/331 (16%)
Query: 141 KNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPF 200
++ + L K G G Y + + + + L P
Sbjct: 31 DTAPQIADPLDHLA-DKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPP 89
Query: 201 FMRKEVMAKCAQLAQFDEELYKVTG-------------------------EGDDKYLIAT 235
M + + K L F L V G D L
Sbjct: 90 VMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPA 149
Query: 236 AEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295
A P+ P + +R+ + CFR+E + R+ F E CI +
Sbjct: 150 ACYPVYPIAASRGPLP-KGGLRFDVAADCFRREPSK------HLDRLQSFRMREYVCIGT 202
Query: 296 PNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVA----------IVSGALNDAAAKKLDLEA 345
P+ D D E + ++ + L + ++V + K +L
Sbjct: 203 PD--DVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLI 260
Query: 346 WFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCIL 405
+ + +S + ++ I+ + H +R +
Sbjct: 261 PLRSEEQPTACMSFNYHREHFGTTWGIQDANGE-------PAHTGCVAF-GMDRLAVAMF 312
Query: 406 ENYQKEDGVEVPEVLQPFMGGKTFLPFKAKP 436
+ + P ++ +G + + A
Sbjct: 313 HTHGTDLS-AWPAKVRDILGLQPHVAAGAHG 342
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 214 bits (546), Expect = 4e-64
Identities = 64/485 (13%), Positives = 135/485 (27%), Gaps = 81/485 (16%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
+ ++ + I ++ + R D I L K+ + ++
Sbjct: 65 GAKVTEWKLGEDRIELTLQSGRYVRV-----HDAIFRLRKQLAEALGKKYKIGIRGIEVE 119
Query: 61 KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAK-----LEVVGNLVHDS 115
I ++ + V ++ ++E+ A +K + L ++ + +
Sbjct: 120 SFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAA 179
Query: 116 VPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELLGIADLKKGADIAGGRGFY-LKGDGV 174
+ E N + + + + +++ + RG +
Sbjct: 180 QYGAKAEHWNLLWQREPMEHPFKE-DPTQAMMKEGWLKR-------GSSRGQWIHGPQSA 231
Query: 175 RLNQALINFGLDFL-EKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTG-------- 225
R+ + L+ L E Y + P + EV K E+Y V
Sbjct: 232 RIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDY 291
Query: 226 -----------------------EGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYS 262
+ P Y + + E+P++ S
Sbjct: 292 WEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRS 351
Query: 263 S-CFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEE-FYQMLK 320
R E+G GI RV +F ++E I + + EE+ F +L
Sbjct: 352 GTSHRYESGGIH----GIERVDEFHRIEIVWIGTK--EEVLKCAEELHDRYMHIFNDILD 405
Query: 321 IPYQVVAI---------VSGALNDAAAKKLDLEAWFP---ASQTYRELVSCSNCTDYQSR 368
I ++ + + G + D EA P + E + S D +
Sbjct: 406 IEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPK 465
Query: 369 RLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDGVEVPEVLQPFMGGKT 428
++ + S + ER L + PE + +G
Sbjct: 466 GFNVKLQSGD-------ELWSGCSGV-GLERWAAVFLAQKGLDPA-NWPEEFRNRVGEMP 516
Query: 429 -FLPF 432
+ F
Sbjct: 517 KGIRF 521
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 7e-06
Identities = 74/497 (14%), Positives = 141/497 (28%), Gaps = 167/497 (33%)
Query: 14 IPEKIRESQRRRFASVDLVDEIISLDKKWRQLQ-FDVEN-YRKEL-NKINKQIAQLKL-- 68
+ I+ QR+ S+ I D+ + Q F N R + K+ + + +L+
Sbjct: 94 LMSPIKTEQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 69 ---------SGKDFSEMVTKTNEIKQQSADKEVEVREA----WAAVK------AKLEVVG 109
SGK + + +V+ + W +K LE++
Sbjct: 152 NVLIDGVLGSGK--TWVALDV------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 110 NLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHV---ELVELLGIADLKKGADIAGGRG 166
L++ P ++++ + KL+ H EL LL + +
Sbjct: 204 KLLYQIDPNWTSRSDHS---------SNIKLRIHSIQAELRRLLKSKPYENCLLV----- 249
Query: 167 FYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMR-KEVMAKCAQLAQFD---EELYK 222
L V+ +A F L LL T R K+V + +
Sbjct: 250 --L--LNVQNAKAWNAFNL-----SCKILLTT----RFKQVTDFLSAATTTHISLDHHSM 296
Query: 223 VTGEGDDKYLIATAEQPLCAYHIDDWIH--PSELPIRYAGYSSCFRKEAGSHGRDTLGIF 280
+ K L+ ++ P +LP +E + L I
Sbjct: 297 TLTPDEVKSLLL------------KYLDCRPQDLP-----------REVLTTNPRRLSII 333
Query: 281 RVHQFEKVEQFCITSPNGNDSW-----DMHEEMIKNS---------EEFYQML------- 319
E + D+W D +I++S + + L
Sbjct: 334 A----ESIRDG----LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 320 KIPYQVVAIVSGALN--------DAAAKKLDLEAWFPASQTYR----ELVSCSNCTDYQS 367
IP +++++ + + K +E P T L + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYA 444
Query: 368 --RRLEIRYGQKKSNEQTK-------QYV------HLLNSTLTATERTICCILENYQKED 412
R + Y K+ + QY HL N +E+ ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-------------IEHPERMT 491
Query: 413 GVEVPEVLQ--PFMGGK 427
V F+ K
Sbjct: 492 --LFRMVFLDFRFLEQK 506
Score = 35.2 bits (80), Expect = 0.053
Identities = 27/256 (10%), Positives = 72/256 (28%), Gaps = 87/256 (33%)
Query: 3 DINLFREE-KGGIPEKIRE---SQRRRFASVDLVDEII--SLDKKWRQ--------LQFD 48
+++F IP + + + +V+++ SL +K + + +
Sbjct: 377 RLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 49 VENYRKELNKINKQ-IAQLKLSGKDFSEMVTKTNE------------IKQQSADKEVEVR 95
++ + +++ + + S+ + + ++ R
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 96 E-----AWAAVKAKLEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVELL 150
+ ++ K+ + S + N
Sbjct: 495 MVFLDFRF--LEQKIRHDSTAWNASGSILNT----------------------------- 523
Query: 151 GIADLKKGADIAGGRGFYLK--GDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMA 208
+ LK FY D + L+N LDFL K L+ + +
Sbjct: 524 -LQQLK----------FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-------T 565
Query: 209 KCAQLAQFDEE--LYK 222
++A E+ +++
Sbjct: 566 DLLRIALMAEDEAIFE 581
Score = 27.9 bits (61), Expect = 9.0
Identities = 28/207 (13%), Positives = 50/207 (24%), Gaps = 57/207 (27%)
Query: 277 LGIFRVHQFEKVEQFCITSPNGNDSWDM---HEEMIKNS--EEFY-----------QMLK 320
Q E V++F N + M E + S Y Q+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 321 IPYQVV------AIVSGALNDAAAKKLDLE-------AWFPASQTYREL----------- 356
Y V + L AK + ++ W A
Sbjct: 128 -KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIF 185
Query: 357 -VSCSNCTD-------YQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENY 408
++ NC Q +I ++ + ++S R + + Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPY 243
Query: 409 QKE----DGVEVPEVLQPFMGG-KTFL 430
+ V+ + F K L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILL 270
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 2e-04
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 8 REEKGGIPEKI---RESQRRRFASVDLVDEIISLDKKWR-QLQFDVEN-YRKELNKINKQ 62
+E PE I RE QR+R +D + ++++WR + + D+E +++ ++ K
Sbjct: 81 TQE----PESIRKWREEQRKRLQELDAASK--VMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 63 IAQLKLSGKDFSEMVTKTNEIKQQSAD 89
+++ K F +Q AD
Sbjct: 135 KINNRIADKAF---------YQQPDAD 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 3e-04
Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 71/215 (33%)
Query: 185 LDFLEKKSYTLLH----TPFFMRKEVMAKCAQL-AQFDEELYKVTGEGDDKYLIATAEQP 239
+D + TL H + +QL QF++ L + T A ++P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG------FAADDEP 54
Query: 240 LCAYHIDDWIHPSELPIRYAGY-SSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNG 298
P+EL ++ GY SS L + + +FE + G
Sbjct: 55 ---------TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-LTEFE--NCYL----EG 98
Query: 299 NDSWDMH-----------------EEMIKNSEEFYQ---MLKIPYQVVAIVSGALNDAAA 338
N D+H +E+IKN + M K P+ + + AL A
Sbjct: 99 N---DIHALAAKLLQENDTTLVKTKELIKN---YITARIMAKRPFDKKS--NSALFRAVG 150
Query: 339 K---KL--------DLEAWFP----ASQTYRELVS 358
+ +L + + +F QTY LV
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Score = 41.6 bits (97), Expect = 6e-04
Identities = 43/275 (15%), Positives = 69/275 (25%), Gaps = 119/275 (43%)
Query: 158 GADIAG-GRGFYLKGDGVR--LNQALINFGLD--FLEKKSYTLLH---------TPFF-- 201
G+ G G Y + N+A D F + +++L T F
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRA------DNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 202 -----MRKEVMAKCAQ------------LAQFDEELYKVTGEGDDKYLIATA-EQP---L 240
+R+ A + + +E T + L AT QP L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 241 CAY----HIDDW-IHPSELPIRYAG-----YS--SC---------------FR------- 266
+ + P+ +AG Y+ + +R
Sbjct: 1739 MEKAAFEDLKSKGLIPA--DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 267 KEAGSHGRDTLGIF-----RVHQF---EKVEQFC--ITSPNG------NDSWDMHEEMIK 310
GR G+ RV E ++ + G N
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---------- 1846
Query: 311 NSEEFYQMLKIPYQVVAIVSG---ALNDAAAKKLD 342
N E Q V +G AL D L+
Sbjct: 1847 NVE--------NQQYV--AAGDLRAL-DTVTNVLN 1870
Score = 28.9 bits (64), Expect = 4.1
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 28/89 (31%)
Query: 313 EEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEI 372
E+F ++L P + A +D +L F Y S +E
Sbjct: 35 EQFNKILPEPTE-----GFAADDEPTTPAELVGKF---------------LGYVSSLVE- 73
Query: 373 RYGQKKSNEQTKQYVHLLNSTLTATERTI 401
+ Q+ +LN LT E
Sbjct: 74 -------PSKVGQFDQVLNLCLTEFENCY 95
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 36.8 bits (85), Expect = 0.011
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 186 DFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHI 245
F + + + +P + E + + D EL K D + + P ++
Sbjct: 88 RFFVDRGFLEIKSPILIPLEYIERM--GIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYL 145
Query: 246 DDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMH 305
PI+ C+RKE+ + +F + + + G+ +
Sbjct: 146 RKLDRALPDPIKIFEIGPCYRKESDGKE-------HLEEFTMLVFWQM----GSGCTREN 194
Query: 306 EEMIKNSEEFYQMLKIPYQVV 326
E I +F L I +++V
Sbjct: 195 LESI--ITDFLNHLGIDFKIV 213
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 36.8 bits (86), Expect = 0.012
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 160 DIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEE 219
+ A G F+ DG + + L F L++ Y + PF M + + K + +
Sbjct: 17 EEAPGMVFWHN-DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA 75
Query: 220 LYKVTGEGDDKYLIATAEQPL-CAYHI---DDWIHPS--ELPIRYAGYSSCFRKEA-GS- 271
++ + E + Y I +P+ C H+ + + S +LP+R A + SC R E GS
Sbjct: 76 MFTTSSENRE-YCI----KPMNCPGHVQIFNQGLK-SYRDLPLRMAEFGSCHRNEPSGSL 129
Query: 272 HGRDTLGIFRVHQF 285
H G+ RV F
Sbjct: 130 H-----GLMRVRGF 138
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 35.6 bits (83), Expect = 0.031
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 173 GVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYL 232
G + + + + +D Y ++TP ++ + E+++ + + +
Sbjct: 270 GATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESM 329
Query: 233 IATAEQPL-CAYHI---DDWIHPS--ELPIRYAGYSSCFRKEA-GS-HGRDTLGIFRVHQ 284
+P+ C +H+ + H S ELPIR A + R EA G+ G+ RV
Sbjct: 330 ---VLRPMNCPHHMMIYANKPH-SYRELPIRIAELGTMHRYEASGAVS-----GLQRVRG 380
Query: 285 F 285
Sbjct: 381 M 381
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 35.0 bits (81), Expect = 0.052
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 23/136 (16%)
Query: 161 IAGGRGFYL-KGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEE 219
G + G +R AL F ++ Y ++ TP E+ + +
Sbjct: 37 TGAGVPLFSLGGGPIR--YALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNN 94
Query: 220 LYKVTGEGDDKYLIATAEQPL-CAYHI---DDWIH----PSELPIRYAGYSSCFRKE-AG 270
+Y EG + + +P+ C YHI + + LP + + R E +G
Sbjct: 95 MYLFDIEGHEFAV-----KPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSG 149
Query: 271 S-HGRDTLGIFRVHQF 285
S + G+ RV F
Sbjct: 150 SIY-----GLLRVRGF 160
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 34.1 bits (79), Expect = 0.099
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 173 GVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYL 232
G + + L F L++ Y + PF M + + K + + ++ + E + Y
Sbjct: 270 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENRE-YC 328
Query: 233 IATAEQPL-CAYHI---DDWIHPS--ELPIRYAGYSSCFRKEA-GS-HGRDTLGIFRVHQ 284
I +P+ C H+ + + S +LP+R A + SC R E GS H G+ RV
Sbjct: 329 I----KPMNCPGHVQIFNQGLK-SYRDLPLRMAEFGSCHRNEPSGSLH-----GLMRVRG 378
Query: 285 F 285
F
Sbjct: 379 F 379
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 33.3 bits (76), Expect = 0.13
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 172 DGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKY 231
L L ++ + + TP + K +AK D L+ D K
Sbjct: 68 KHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMT--IGEDHPLFSQVFWLDGKK 125
Query: 232 LIATAEQP-LCAYHI---DDWIHPSELPIRYAGYSSCFRKE 268
+ +P L + + PIR +C+RKE
Sbjct: 126 CL----RPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKE 162
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.0 bits (72), Expect = 0.51
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 38 LDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQ--SADKEVEVR 95
LD+++ QL D E K + L ++ + + + ++ + + ++
Sbjct: 931 LDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDII 990
Query: 96 EAWAAVKAKLEVV 108
+ AKL +
Sbjct: 991 NGLNELIAKLTIF 1003
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.82
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 27/55 (49%)
Query: 53 RKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWA-AVKAKLE 106
++ L K+ A LKL D SA A A+KA +E
Sbjct: 19 KQALKKLQ---ASLKLYADD--------------SAP---------ALAIKATME 47
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 29.5 bits (67), Expect = 2.3
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 253 ELPIRYAGYSSCFRKEA-GS-HGRDTLGIFRVHQF 285
ELP+R++ +S R EA G+ G+ R+ +F
Sbjct: 147 ELPLRFSDFSPLHRNEASGALS-----GLTRLRKF 176
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 29.1 bits (66), Expect = 2.6
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
K + ++V+LL L KGA
Sbjct: 150 KGYADIVQLL----LAKGART 166
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 28.2 bits (64), Expect = 2.8
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
K + VE L L+ G+D
Sbjct: 20 KGDIPSVEYL----LQNGSDP 36
Score = 27.8 bits (63), Expect = 3.5
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
HV++V+LL L GA
Sbjct: 86 NGHVDIVKLL----LSYGASR 102
Score = 27.0 bits (61), Expect = 6.1
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+++VELL L+ A +
Sbjct: 53 HGHLKVVELL----LQHKALV 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 28.6 bits (65), Expect = 3.0
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ +VE+L + +GA I
Sbjct: 49 EGRSAVVEML----IMRGARI 65
Score = 27.4 bits (62), Expect = 7.1
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H ++V+ L L+ ADI
Sbjct: 82 HGHRDIVQKL----LQYKADI 98
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 28.1 bits (62), Expect = 3.0
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 27 ASVDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKL----SGKDFSEMVTKTNE 82
+++ D+ K L D+EN KE+ + ++ ++ S K+ E+ ++ N+
Sbjct: 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121
Query: 83 IKQQSADKEVEVREA 97
++ E E+ ++
Sbjct: 122 YQKNIVKLETELNDS 136
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 27.3 bits (62), Expect = 3.2
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+V+LL L+ GAD+
Sbjct: 12 NGHLEVVKLL----LEAGADV 28
Score = 27.3 bits (62), Expect = 3.6
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+V+LL L+ GAD+
Sbjct: 45 NGHLEVVKLL----LEAGADV 61
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 29.0 bits (65), Expect = 3.2
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ ++ LV LL ++ GAD+
Sbjct: 111 RRNMTLVTLL----VENGADV 127
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 28.1 bits (64), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
NHV+ V++L L+ GAD
Sbjct: 112 GNHVKCVKML----LESGADP 128
Score = 28.1 bits (64), Expect = 4.0
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ +VE L L+ GAD
Sbjct: 46 HGQIAVVEFL----LQNGADP 62
Score = 27.4 bits (62), Expect = 6.3
Identities = 1/21 (4%), Positives = 7/21 (33%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ + + +++ I
Sbjct: 13 QGEMLYLATR----IEQENVI 29
Score = 27.4 bits (62), Expect = 6.7
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
K + ++V++L L G D+
Sbjct: 79 KGYTDIVKML----LDCGVDV 95
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 27.7 bits (63), Expect = 3.5
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H E+V+LL KGAD+
Sbjct: 85 NGHHEIVKLL----DAKGADV 101
Score = 27.3 bits (62), Expect = 4.1
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H E V+ L L KGAD+
Sbjct: 19 NGHAEEVKKL----LSKGADV 35
Score = 27.3 bits (62), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H E+V+LL L KGAD+
Sbjct: 52 NGHAEIVKLL----LAKGADV 68
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 27.7 bits (63), Expect = 3.6
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ HV V+LL L KGAD
Sbjct: 83 EGHVSCVKLL----LSKGADK 99
Score = 27.0 bits (61), Expect = 7.1
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+E++E L L KGADI
Sbjct: 50 CGQLEILEFL----LLKGADI 66
Score = 26.6 bits (60), Expect = 8.4
Identities = 4/21 (19%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
++ V+ + KG D+
Sbjct: 17 NGDLDEVKDY----VAKGEDV 33
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 27.5 bits (62), Expect = 3.8
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+V+LL L+ GAD+
Sbjct: 67 NGHLEVVKLL----LEAGADV 83
Score = 27.2 bits (61), Expect = 4.4
Identities = 3/21 (14%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+H L + +G+ +
Sbjct: 4 HHHHHHSSGL----VPRGSHM 20
Score = 27.2 bits (61), Expect = 4.9
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ V +L + GAD+
Sbjct: 34 AGQDDEVRIL----MANGADV 50
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 28.6 bits (64), Expect = 3.8
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
K ++ V+LL ++ GAD+
Sbjct: 100 KRSLQCVKLL----VENGADV 116
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 28.2 bits (64), Expect = 4.0
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+E V L L+ GAD
Sbjct: 46 FGEIETVRFL----LEWGADP 62
Score = 28.2 bits (64), Expect = 4.4
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
NHV+ VE L L +GAD+
Sbjct: 112 GNHVKCVEAL----LARGADL 128
Score = 27.4 bits (62), Expect = 7.7
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ ++V LL L++ DI
Sbjct: 79 GGYTDIVGLL----LERDVDI 95
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 27.8 bits (63), Expect = 4.2
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
++ ELL L GA+
Sbjct: 54 MGSAQVAELL----LLHGAEP 70
Score = 27.4 bits (62), Expect = 5.8
Identities = 3/21 (14%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ ++ + +L + GA +
Sbjct: 88 EGFLDTLVVL----HRAGARL 104
Score = 27.4 bits (62), Expect = 5.9
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ VE V L L+ GAD
Sbjct: 22 RGQVETVRQL----LEAGADP 38
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 28.6 bits (65), Expect = 4.3
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
EL LL + GAD
Sbjct: 232 TASEELACLL----MDFGADT 248
Score = 27.8 bits (63), Expect = 6.1
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ V LL L+ GA +
Sbjct: 135 SGSWDCVNLL----LQHGASV 151
Score = 27.5 bits (62), Expect = 8.4
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ HVE V L + G +I
Sbjct: 167 RGHVECVNSL----IAYGGNI 183
Score = 27.5 bits (62), Expect = 9.7
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 140 LKNHVELVELLGIADLKKGADI 161
L H+ V++L LK GA +
Sbjct: 101 LGGHLSCVKIL----LKHGAQV 118
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 28.7 bits (65), Expect = 4.4
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 98 WAAVKAKLEVVGNLV--HDSVPVSNDEANNAIVRTWGEKRTEPKL-----KNHVELVELL 150
+ A + + L+ D + +N + + E+++LL
Sbjct: 250 LSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309
Query: 151 GIADLKKGADI 161
+K ++
Sbjct: 310 ----QEKLDEV 316
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 27.7 bits (63), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+ E+L LK GAD+
Sbjct: 90 IGHLEIAEVL----LKHGADV 106
Score = 27.3 bits (62), Expect = 6.2
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+VE+L LK GAD+
Sbjct: 57 HGHLEIVEVL----LKNGADV 73
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 27.8 bits (63), Expect = 4.6
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
E+VE L ++ GADI
Sbjct: 120 YVRPEVVEAL----VELGADI 136
Score = 27.5 bits (62), Expect = 5.9
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ V LL + GAD+
Sbjct: 86 LGSDKCVRLL----AEAGADL 102
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 27.7 bits (63), Expect = 4.8
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ H +VE+L LK GAD+
Sbjct: 77 EGHANIVEVL----LKHGADV 93
Score = 27.4 bits (62), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
NH E+VELL +K GAD+
Sbjct: 110 HNHQEVVELL----IKYGADV 126
Score = 27.4 bits (62), Expect = 5.9
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H E+L L+ G
Sbjct: 44 YGHFSTTEVL----LRAGVSR 60
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 28.2 bits (64), Expect = 4.8
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
EL LL + GAD
Sbjct: 176 TASEELACLL----MDFGADT 192
Score = 27.8 bits (63), Expect = 7.2
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ V LL L+ GA +
Sbjct: 79 SGSWDCVNLL----LQHGASV 95
Score = 27.8 bits (63), Expect = 7.6
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 140 LKNHVELVELLGIADLKKGADI 161
L H+ V++L LK GA +
Sbjct: 45 LGGHLSCVKIL----LKHGAQV 62
Score = 27.4 bits (62), Expect = 8.4
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ HVE V L + G +I
Sbjct: 111 RGHVECVNSL----IAYGGNI 127
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 28.2 bits (63), Expect = 5.0
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ VELL ++KGAD+
Sbjct: 103 RRCKHYVELL----VEKGADV 119
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 27.3 bits (62), Expect = 5.4
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+V+LL L+ GAD+
Sbjct: 45 NGHLEVVKLL----LEAGADV 61
Score = 26.9 bits (61), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+V+LL L+ GAD+
Sbjct: 12 NGHLEVVKLL----LEAGADV 28
Score = 26.9 bits (61), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+V+LL L+ GAD+
Sbjct: 78 NGHLEVVKLL----LEAGADV 94
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 27.7 bits (63), Expect = 5.4
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+VE+L LK GAD+
Sbjct: 57 NGHLEIVEVL----LKNGADV 73
Score = 27.3 bits (62), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+VE+L LK GAD+
Sbjct: 123 FGHLEIVEVL----LKNGADV 139
Score = 27.3 bits (62), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H+E+VE+L LK GAD+
Sbjct: 90 FGHLEIVEVL----LKNGADV 106
Score = 27.3 bits (62), Expect = 8.0
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ V +L + GAD+
Sbjct: 24 AGRDDEVRIL----MANGADV 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 26.6 bits (59), Expect = 5.5
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67
+ I + +K Q D+++ +++ + +Q+ L
Sbjct: 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 28.0 bits (63), Expect = 5.5
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
E+VE L ++ GADI
Sbjct: 121 YVRPEVVEAL----VELGADI 137
Score = 27.2 bits (61), Expect = 9.0
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ V LL + GAD+
Sbjct: 87 LGSDKCVRLL----AEAGADL 103
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 27.7 bits (63), Expect = 5.6
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
N V +VE L L+ GAD+
Sbjct: 52 YNRVSVVEYL----LQHGADV 68
Score = 27.4 bits (62), Expect = 7.7
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H E+ ELL +K GA +
Sbjct: 85 YGHYEVAELL----VKHGAVV 101
Score = 27.0 bits (61), Expect = 8.5
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
K E+ +LL L+ GAD
Sbjct: 118 KGKYEICKLL----LQHGADP 134
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 27.8 bits (63), Expect = 5.6
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
N + +V+LL L+ GA++
Sbjct: 160 NNSLSMVQLL----LQHGANV 176
Score = 27.4 bits (62), Expect = 8.2
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
E V+LL L++GADI
Sbjct: 126 TECQETVQLL----LERGADI 142
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 27.4 bits (62), Expect = 5.6
Identities = 4/21 (19%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
++ +++L ++ GAD+
Sbjct: 78 TGFLDTLKVL----VEHGADV 94
Score = 27.0 bits (61), Expect = 7.6
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ L LK+GA
Sbjct: 45 FGSTAIALEL----LKQGASP 61
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 28.2 bits (64), Expect = 5.7
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
KN VE+ LL L GAD
Sbjct: 134 KNRVEVCSLL----LSHGADP 150
Score = 27.8 bits (63), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
N V +V+LL L+ GAD+
Sbjct: 68 YNRVRIVQLL----LQHGADV 84
Score = 27.8 bits (63), Expect = 7.2
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
H E+ ELL LK GA +
Sbjct: 101 YGHYEVTELL----LKHGACV 117
Score = 27.5 bits (62), Expect = 9.6
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ H +++E+L K GA +
Sbjct: 257 RAHNDVMEVL----HKHGAKM 273
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 26.5 bits (59), Expect = 5.8
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 32 VDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLK 67
I+S+ + ++L + + RK ++ ++ QL
Sbjct: 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 27.9 bits (63), Expect = 6.2
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
N+V LV L L GA
Sbjct: 41 DNNVRLVCTL----LNAGALK 57
Score = 27.5 bits (62), Expect = 8.4
Identities = 4/21 (19%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+E+++ L K +I
Sbjct: 205 NKDIEMLQAL----FKYDINI 221
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 28.4 bits (64), Expect = 6.5
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 54 KELNKINKQIAQL--KLSGKDFSEMVTKTNEIKQQSADKE------VE----VREA 97
K+ K+ +I Q+ L K SE++ + +K++ E E VREA
Sbjct: 12 KKYAKMVSKINQIESDLRSKKNSELIRLSMVLKEKVNSFEDADEHLFEAFALVREA 67
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase,
signal transduction, sugar transport; 1.98A {Escherichia
coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F*
1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Length = 161
Score = 27.2 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 164 GRGFYLK---GDGVRLNQALINFGLDFLEKKSYTLLHTP 199
G GF G V++ +I F L LE+K+ + L TP
Sbjct: 93 GEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTL-TP 130
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 27.6 bits (62), Expect = 6.9
Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 140 LKNHVELVELLGIADLKKGADI 161
L+ +LV+ + + + D
Sbjct: 46 LEGEFDLVQRI----IYEVDDP 63
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 27.8 bits (63), Expect = 7.0
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
V+L++L L KGAD+
Sbjct: 82 AGSVKLLKLF----LSKGADV 98
Score = 27.8 bits (63), Expect = 7.4
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ ++VELL L+ GAD
Sbjct: 49 MSREDIVELL----LRHGADP 65
Score = 27.4 bits (62), Expect = 9.2
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
++ ELL K+GA
Sbjct: 263 LKLKKIAELL----CKRGAST 279
Score = 27.4 bits (62), Expect = 9.3
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
V+ ++ L K+GA++
Sbjct: 115 YGKVKALKFL----YKRGANV 131
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 27.9 bits (63), Expect = 7.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 105 LEVVGNLVHDSVPVSNDEANNAIVRTWGEKRTEPKLKNHVELVE---LLGIADLKKGA 159
LE + S V + EA +A+ + ++R LVE +A + G
Sbjct: 229 LECMQVCKIHSEVVEDTEAVSAVQQLLDDERM---------LVEPACGAALAAIYSGL 277
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 27.1 bits (61), Expect = 7.3
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ VE V L L+ GA+
Sbjct: 22 RGRVEEVRAL----LEAGANP 38
Score = 26.7 bits (60), Expect = 9.8
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+ ELL L GA+
Sbjct: 54 MGSARVAELL----LLHGAEP 70
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 8.4
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 29 VDLVDEIISLDKKWRQLQFDVENYRKELNKINKQIAQLKLSGKDFSEMVTKT-NEIKQQS 87
+D+ + +K ++ + + KL+ F K E+ +
Sbjct: 796 LDVEEWRRRQEK-------RLKELLALAERSQR-----KLASPGF---REKAPKEVVEAE 840
Query: 88 ADKEVEVREAWAAVKAKLEVVG 109
+ E E ++ L +G
Sbjct: 841 EARLKENLEQAERIREALSQIG 862
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 27.5 bits (62), Expect = 8.6
Identities = 4/57 (7%), Positives = 9/57 (15%), Gaps = 15/57 (26%)
Query: 141 KNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLH 197
+L L+ + + D S+
Sbjct: 88 VRAHTCACVL----LQPRPSH-----------PRDASDTYLTQSQDCTPDTSHAPAA 129
Score = 27.5 bits (62), Expect = 8.9
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
++ELL LK GAD
Sbjct: 202 AQAASVLELL----LKAGADP 218
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 27.4 bits (62), Expect = 8.7
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
K E+ + L ++ GA +
Sbjct: 117 KKWFEVSQFL----IENGASV 133
Score = 27.4 bits (62), Expect = 9.0
Identities = 4/21 (19%), Positives = 7/21 (33%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
E+ L L K ++
Sbjct: 46 FQAHEITSFL----LSKMENV 62
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 27.0 bits (61), Expect = 8.9
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
N +E+ + L + +GADI
Sbjct: 49 NNDIEIAKAL----IDRGADI 65
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA;
2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Length = 154
Score = 26.8 bits (60), Expect = 8.9
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 164 GRGFYLK---GDGVRLNQALINFGLDFLEKKSYTLLHTP 199
G GF V L+ L + KK ++ +P
Sbjct: 88 GNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIK-SP 125
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 27.5 bits (62), Expect = 9.0
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 140 LKNHVELVELLGIADLKKGADI 161
+ ++ +VELL + GAD+
Sbjct: 126 IHGYLGIVELL----VSLGADV 143
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase
activity1, lyase-transferase complex; 2.20A {Vibrio
vulnificus}
Length = 183
Score = 27.3 bits (61), Expect = 9.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 164 GRGFYLK---GDGVRLNQALINFGLDFLEKKSYTLLHTP 199
G GF G V+ +I F L LE+K+ + L TP
Sbjct: 115 GEGFTRIAEEGQTVKAGDTVIEFDLALLEEKAKSTL-TP 152
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 27.2 bits (61), Expect = 9.5
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
+V LV L L +GA +
Sbjct: 85 NQNVNLVRAL----LARGASV 101
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system,
sugar transport, transferase, phosphorylation,
transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1
PDB: 1gpr_A
Length = 162
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 164 GRGFYLK---GDGVRLNQALINFGLDFLEKKSYTLLHTP 199
G GF GD V Q L+ LD ++ +L+ TP
Sbjct: 93 GEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLM-TP 130
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 27.0 bits (61), Expect = 9.8
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
N+V+ +L LK GA+
Sbjct: 135 VNNVDAAVVL----LKNGANK 151
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 27.5 bits (62), Expect = 9.9
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 141 KNHVELVELLGIADLKKGADI 161
N++++V+LL L +G
Sbjct: 189 HNNLDIVKLL----LPRGGSP 205
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,941,705
Number of extensions: 425218
Number of successful extensions: 1242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 216
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)