RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043456
(447 letters)
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 258 bits (659), Expect = 8e-84
Identities = 103/313 (32%), Positives = 172/313 (54%), Gaps = 8/313 (2%)
Query: 121 DEANNAIVRTWGEKRT-EPKLKNHVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQA 179
E N ++ G +HV L+E G + + + ++G R + LKGD A
Sbjct: 3 GEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELA 61
Query: 180 LINFGLDFLEKKSYTLLHTPFFMRKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQP 239
L+ F +DF+ ++ + + P + R++ + ++++ + D YL TAE
Sbjct: 62 LLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE--TDLYLTGTAEVV 119
Query: 240 LCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGN 299
L A H + + LP+RYAGY+ FR EAGS G+D G+ RVHQF KVEQ+ +T +
Sbjct: 120 LNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLE 179
Query: 300 DSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSC 359
S +E+++N+EE ++L++PY++V + +G + +++D+E + P+ YRE SC
Sbjct: 180 ASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSC 239
Query: 360 SNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VEVPE 418
S D+Q+RR +RY + E +Y + LN+T AT R + +LEN+Q +DG V VP+
Sbjct: 240 SALLDWQARRANLRY---RDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQ 296
Query: 419 VLQPFMGGKTFLP 431
L P+MG + P
Sbjct: 297 ALIPYMGKEVLEP 309
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 120 bits (301), Expect = 1e-31
Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 21/293 (7%)
Query: 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFM 202
H ++ + L + + + G +G + + + + +D Y ++TP
Sbjct: 2 HRKIGKELELFTN---SQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLA 58
Query: 203 RKEVMAKCAQLAQFDEELYKVTGEGDDK--YLIATAEQPLCAYHIDDWIHPSELPIRYAG 260
++ + E+++ + + L + + ELPIR A
Sbjct: 59 NVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAE 118
Query: 261 YSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK 320
+ R EA + RV + P + + + ++ + Y+
Sbjct: 119 LGTMHRYEASGAVSG---LQRVRGMTLNDSHIFVRP--DQIKEEFKRVVNMIIDVYKDFG 173
Query: 321 IPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQK--- 377
+ D D + W A +E + ++ YG K
Sbjct: 174 FEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDV 233
Query: 378 --KSNEQTKQYVHLLNSTLTATERTICCILENYQKEDG-VEVPEVL-QPFMGG 426
K+ ++ + ER Y +DG P V+ + +
Sbjct: 234 QVKTAMGKEETLSTAQLDFLLPERF----DLTYIGQDGEHHRPVVIHRGVVST 282
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 104 bits (261), Expect = 2e-26
Identities = 42/274 (15%), Positives = 98/274 (35%), Gaps = 23/274 (8%)
Query: 145 ELVELLGIADLKKGADIAGGRGFY-LKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMR 203
++E I D + +G + G + + + L + + + + P +
Sbjct: 8 NILEEAEIIDQRYPV-----KGMHVWMPHGFMIRKNTLKI-LRRILDRDHEEVLFPLLVP 61
Query: 204 KEVMAKCAQLAQFDEELYKVTGEGDDK------YLIATAEQPLCAYHIDDWIHPSELPIR 257
++ +AK A + E+ G L T+E + ++LP+R
Sbjct: 62 EDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMR 121
Query: 258 YAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQ 317
+ + FR E + RV + ++ +++ + E ++ +EF+
Sbjct: 122 FYQVVNTFRYETKHTR----PLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFN 177
Query: 318 MLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQK 377
L IPY + + + + P ++ + N +R EI++
Sbjct: 178 SLGIPYLITRRPPWDKFPGSEYTVAFDTLMP-DGKTLQIGTVHNLGQTFARTFEIKF--- 233
Query: 378 KSNEQTKQYVHLLNSTLTATERTICCILENYQKE 411
++ E +YVH + ++R I ++ + E
Sbjct: 234 ETPEGDHEYVH--QTCYGLSDRVIASVIAIHGDE 265
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 99 bits (248), Expect = 2e-24
Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 22/271 (8%)
Query: 145 ELVELLGIADLKKGADIAGGRGFY-LKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMR 203
+++E I D++ +G G ++ + + L++ + P +
Sbjct: 10 DILEKAEIYDVRYPI-----KGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIP 64
Query: 204 KEVMAKCAQLAQFDEELYKVTGEG------DDKYLIATAEQPLCAYHIDDWIHPSELPIR 257
++++AK A+ + E+ G L T+E P+ ++LPI+
Sbjct: 65 EDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIK 124
Query: 258 YAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQ 317
+ FR E + R+ + ++ ++ + +E I ++F+
Sbjct: 125 IYQIVNTFRYETKHT----RPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFD 180
Query: 318 MLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQK 377
L IPY + A + + FP ++ + N S+ EI +
Sbjct: 181 TLGIPYLISKRPEWDKFPGAEYTMAFDTIFP-DGRTMQIATVHNLGQNFSKTFEIIF--- 236
Query: 378 KSNEQTKQYVHLLNSTLTATERTICCILENY 408
++ K Y + + ++R I I+ +
Sbjct: 237 ETPTGDKDYAYQ--TCYGISDRVIASIIAIH 265
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 99.0 bits (246), Expect = 5e-24
Identities = 18/177 (10%), Positives = 49/177 (27%), Gaps = 8/177 (4%)
Query: 235 TAEQPLCAYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCIT 294
L Y + +LP A CF + + + + RV + + T
Sbjct: 119 LLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVS-NSNQTPSSVTRVGEKTEASLVWFT 177
Query: 295 SPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYR 354
S + +++ +++ + + + + ++
Sbjct: 178 PTR--TSSQWLDFWLRHRLLWWRKFAMSPSNFSSADC---QDELGRKGSKLYYSFPWGKE 232
Query: 355 ELVSCSNCTDYQSRRLEIRYGQK-KSNEQTKQYVHLLNSTLTATERTICCIL-ENYQ 409
+ + N D + + + K V + S + L +++Q
Sbjct: 233 PIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQ 289
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 89.2 bits (221), Expect = 3e-22
Identities = 23/117 (19%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 1 MLDINLFREEKGGIPEKIRESQRRRFASVDLVDEIISLDKKWRQLQFDVENYRKELNKIN 60
M+D+ R+E PE + R + ++DL + +++LD++ ++L+ ++ + E N++
Sbjct: 1 MVDLKRLRQE----PEVFHRAIREKGVALDL-EALLALDREVQELKKRLQEVQTERNQVA 55
Query: 61 KQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVEVREAWAAVKAKLEVVGNLVHDSVP 117
K++ + ++ ++ + + +++ E +RE A ++A L V P
Sbjct: 56 KRVPKAP--PEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 92.6 bits (229), Expect = 8e-22
Identities = 31/271 (11%), Positives = 78/271 (28%), Gaps = 24/271 (8%)
Query: 145 ELVELLGIADLKKGADIAGGRGFY-LKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMR 203
E+++ +AD RG ++ G + + + ++ + + P F+
Sbjct: 16 EVIQKAELADYGPV------RGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIP 69
Query: 204 KEVMAKCAQLAQFDEELYKVT------GEGDDKYLIATAEQPLCAYHIDDWIHPSELPIR 257
+ K A+ + V + + T+E + +LP
Sbjct: 70 MSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQL 129
Query: 258 YAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQ 317
+ + R E + F + ++ + + +
Sbjct: 130 LNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREE-----AEEEVRRMLSIYARLARE 184
Query: 318 MLKIPYQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQK 377
IP A +EA + + + +R +I++
Sbjct: 185 YAAIPVIEGLKTEKEKFAGAVYTTTIEALMK-DGKALQAGTSHYLGENFARAFDIKF--- 240
Query: 378 KSNEQTKQYVHLLNSTLTATERTICCILENY 408
+ + +YVH ++ + R I I+ +
Sbjct: 241 QDRDLQVKYVH--TTSWGLSWRFIGAIIMTH 269
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 87.8 bits (217), Expect = 4e-20
Identities = 46/301 (15%), Positives = 89/301 (29%), Gaps = 50/301 (16%)
Query: 143 HVELVELLGIADLKKGADIAGGRGFYLKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFM 202
H ++ + L + ++ + A G F+ DG + + L F L++ Y + PF M
Sbjct: 3 HRKIGKQLDLYHMQ---EEAPGMVFWH-NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMM 58
Query: 203 RKEVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHIDDWIHPSELPIRYAGYS 262
+ + K + + ++ + E + + +LP+R A +
Sbjct: 59 DRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFG 118
Query: 263 SCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIP 322
SC R E G+ RV F + + + D I+ + Y
Sbjct: 119 SCHRNEPSGSLH---GLMRVRGFTQDDAHIFCTEE--QIRDEVNGCIRLVYDMYSTFGFE 173
Query: 323 YQVVAIVSGALNDAAAKKLDLEAWFPASQTYRELVSCSNCT------------------- 363
VV + + E W A + +N
Sbjct: 174 KIVVKLSTRPEKRIG----SDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTL 229
Query: 364 ----------------DYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTICCILEN 407
RL Y + + + +H + L + ER I + E
Sbjct: 230 YDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIH--RAILGSMERFIGILTEE 287
Query: 408 Y 408
+
Sbjct: 288 F 288
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 31.1 bits (69), Expect = 0.28
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 165 RGFY-LKGDGVRLNQALINFGLDFLEKKSYTLLHTPFFMRKEVMAKCA--QLAQFDEELY 221
RG + + + + + N + + +Y + TP F ++ A+ +E+Y
Sbjct: 6 RGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMY 65
Query: 222 KVTGEGDDKYLIATAEQPLC--AYHIDDWIHPSELPIRYAGYSSCFRKEAGSHGR 274
+GD + +Y PI+ FR E GR
Sbjct: 66 TFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR 120
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Escherichia coli [TaxId: 562]}
Length = 72
Score = 26.6 bits (59), Expect = 1.7
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 290 QFCITSPNGNDSWDMHEEMIKNSEEFYQMLK-IP 322
Q +T NGN D+H I + + IP
Sbjct: 32 QGVVTD-NGNVILDVHGMEILDPIAMENAINAIP 64
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 28.5 bits (63), Expect = 2.1
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 280 FRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVV 326
F + F EQ CI N + M +E Y+ I ++ +
Sbjct: 416 FEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFI 462
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 28.2 bits (62), Expect = 2.5
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 3/114 (2%)
Query: 280 FRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVVAIVSGALNDAAAK 339
F + + EQ CI N + M +E YQ I + + L+
Sbjct: 390 FEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDF---GLDLQPCI 446
Query: 340 KLDLEAWFPASQTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNST 393
+L P C + +E ++ ++ + ++ L + T
Sbjct: 447 ELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKT 500
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 80
Score = 25.9 bits (57), Expect = 3.4
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 277 LGIFRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLK-IP 322
+ + + + NGN D I + + L IP
Sbjct: 25 FNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTIP 71
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Length = 72
Score = 25.4 bits (56), Expect = 4.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 292 CITSPNGNDSWDMHEEMIKNSEEFYQMLK-IP 322
+T NGN D+H I N E + L +
Sbjct: 35 VVTD-NGNVILDVHNFSILNPVEIEKELNNVA 65
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Length = 74
Score = 25.1 bits (55), Expect = 4.3
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 292 CITSPNGNDSWDMHEEMIKNSEEFYQMLK-IP 322
+ G+ D I + ++ L IP
Sbjct: 37 FYFTDGGHLIADCRFGPIGDPLGLHRALLEIP 68
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 27.4 bits (60), Expect = 4.6
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 280 FRVHQFEKVEQFCITSPNGNDSWDMHEEMIKNSEEFYQMLKIPYQVV 326
F + EQFCI N + + K +E Y +IP+ ++
Sbjct: 379 FETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLI 425
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 94
Score = 25.3 bits (55), Expect = 7.2
Identities = 6/46 (13%), Positives = 18/46 (39%)
Query: 48 DVENYRKELNKINKQIAQLKLSGKDFSEMVTKTNEIKQQSADKEVE 93
+ + R+ +++I+ I Q D+ + ++ + E
Sbjct: 9 GLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERV 54
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 25.8 bits (56), Expect = 9.2
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 19 RESQRRRFASVDLVDEIISLDKKWRQLQFDVENY 52
R+ + +++ D +++ ++R+L+ + Y
Sbjct: 103 RDEGKCVEGILEIFDMLLATTSRFRELKLQHKEY 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.390
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,697,034
Number of extensions: 80730
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 32
Length of query: 447
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,199,356
Effective search space: 430568804
Effective search space used: 430568804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)