BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043457
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 85 LSFGTDGNLVLAEADGTVVWQSNTANKGVVRFELLSSGNMVLRDSKGKFIWQS 137
L F DGNLV +G W + T KG VR GN+V+ + +W S
Sbjct: 168 LVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS 220
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 87 FGTDGNLVLAEADGTVVWQSNTANKGVVRFELLSSGNMVLRDSKGKFIWQSFDY-PT 142
F DGNLV+ A V+W S+T L ++G++ + D K +W F + PT
Sbjct: 201 FQGDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKP--VWARFGFQPT 255
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 149 QSLRVSRVTKLISRLSIKENVDGPHSFVMEPKRLALYY----------KSSNGPRPVVYY 198
Q++ R+ +++ + N+D S+V + LY + S GP+PV+ Y
Sbjct: 90 QNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVY 149
Query: 199 TFPISY-KGLKNLTLKSSPETMYKLTLVSSDGNSLVLDRPKYDSTISFLRL---SMDGNL 254
SY +G NL Y ++++S GN +V+ + FL + GN
Sbjct: 150 IHGGSYMEGTGNL---------YDGSVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNY 200
Query: 255 RIFTFPREVDWLPEEGRFWLPEEERFTLFGKDSRGS 290
+ + + W E F+ + R T+FG + GS
Sbjct: 201 GLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGS 236
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 149 QSLRVSRVTKLISRLSIKENVDGPHSFVMEPKRLALYY----------KSSNGPRPVVYY 198
Q++ R+ +++ + N+D S+V + LY + S GP+PV+ Y
Sbjct: 77 QNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVY 136
Query: 199 TFPISY-KGLKNLTLKSSPETMYKLTLVSSDGNSLVLDRPKYDSTISFLRL---SMDGNL 254
SY +G NL Y ++++S GN +V+ + FL + GN
Sbjct: 137 IHGGSYMEGTGNL---------YDGSVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNY 187
Query: 255 RIFTFPREVDWLPEEGRFWLPEEERFTLFGKDSRGS 290
+ + + W E F+ + R T+FG + GS
Sbjct: 188 GLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGS 223
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 70 VWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTA-NKGVVRFELLSSGNMVLRD 128
VW +N P ++ +DGN V+ +A+G +W S++ G L GN+V+
Sbjct: 40 VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIYG 99
Query: 129 SKGKFIWQSFDY 140
S IW + Y
Sbjct: 100 SD---IWSTNTY 108
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 90 DGNLVLAEADGTVVWQSNTANKGV-VRFELLSSGNMVLRDSKGKFIWQS 137
D N VL ++ G VW SNT G R L ++GN+V+ D + IWQ+
Sbjct: 29 DCNFVLYDS-GKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQT 76
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 70 VWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTA-NKGVVRFELLSSGNMVLRD 128
VW +N P ++ +DGN V+ +A+G +W S++ G L GN+V+
Sbjct: 40 VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIYR 99
Query: 129 SKGKFIWQSFDY 140
S IW + Y
Sbjct: 100 SD---IWSTNTY 108
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 187 KSSNGPRPVVYYTFPISY-KGLKNLTLKSSPETMYKLTLVSSDGNSLVLDRPKYDSTISF 245
+ S GP+PV+ Y SY +G NL Y ++++S GN +V+ + F
Sbjct: 143 RDSGGPKPVMVYIHGGSYMEGTGNL---------YDGSVLASYGNVIVITVNYRLGVLGF 193
Query: 246 LRL---SMDGNLRIFTFPREVDWLPEEGRFWLPEEERFTLFGKDSRGS 290
L + GN + + + W E F+ + R T+FG + GS
Sbjct: 194 LSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGS 241
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 99 DGTVVWQSNTANKGV-VRFELLSSGNMVLRDSKGKFIWQS 137
+G +W SNT +G R LLS GN+V+ D +W S
Sbjct: 37 NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 76
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 99 DGTVVWQSNTANKGV-VRFELLSSGNMVLRDSKGKFIWQS 137
+G +W SNT +G R LLS GN+V+ D +W S
Sbjct: 36 NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 75
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 70 VWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTA-NKGVVRFELLSSGNMVLRD 128
VW N P ++ +DGN V+ +A+G +W S++ G L GN+V+
Sbjct: 40 VWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 129 SKGKFIWQSFDY 140
G IW + Y
Sbjct: 99 --GSDIWSTNTY 108
>pdb|3R0E|A Chain A, Structure Of Remusatia Vivipara Lectin
pdb|3R0E|C Chain C, Structure Of Remusatia Vivipara Lectin
Length = 109
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 90 DGNLVLAEADGTVVWQSNTANKGV-VRFELLSSGNMVLRDSKGKFIWQS 137
D NLVL + WQSNTAN G + L G +V+++ G +W+S
Sbjct: 30 DCNLVLYNGN----WQSNTANNGRDCKLTLTDYGELVIKNGDGSTVWKS 74
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 70 VWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTA-NKGVVRFELLSSGNMVLRD 128
VW +N G ++ +DGN V+ +A+G +W S++ G L GN+V+
Sbjct: 40 VWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 129 SKGKFIWQSFDY 140
G IW + Y
Sbjct: 99 --GSDIWSTGTY 108
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 90 DGNLVLAEADGTVVWQSNT--ANKGVVRFELLSSGNMVLRDSKGKFIWQS 137
D NLVL + T W SNT K L S GN V+ DS G+ +W S
Sbjct: 28 DCNLVLYD-HSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWAS 76
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 70 VWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTA-NKGVVRFELLSSGNMVLRD 128
VW +N G ++ +DGN V+ +A+G +W S++ G L GN+V+
Sbjct: 40 VWASNTGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYR 99
Query: 129 SKGKFIWQS 137
S IW +
Sbjct: 100 SD---IWST 105
>pdb|2I74|A Chain A, Crystal Structure Of Mouse Peptide N-Glycanase C-Terminal
Domain In Complex With Mannopentaose
pdb|2I74|B Chain B, Crystal Structure Of Mouse Peptide N-Glycanase C-Terminal
Domain In Complex With Mannopentaose
Length = 189
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 304 KCGKLGLCEDNQCIACPT---EKGLIGWSKECEPKQVNFCGTKDFHYY 348
+CG GL D I + E G + W E QVN G K+ Y
Sbjct: 83 ECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLRSY 130
>pdb|2G9F|A Chain A, Crystal Structure Of Intein-Tagged Mouse Pngase C-Terminal
Domain
Length = 201
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 304 KCGKLGLCEDNQCIACPT---EKGLIGWSKECEPKQVNFCGTKDFHYY 348
+CG GL D I + E G + W E QVN G K+ Y
Sbjct: 103 ECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLRSY 150
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 70 VWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTA-NKGVVRFELLSSGNMVLRD 128
VW +N G ++ DGN V+ +A+G +W S++ G L GN+V+
Sbjct: 40 VWASNTGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 129 SKGKFIWQS 137
G IW +
Sbjct: 99 --GSDIWST 105
>pdb|2G9G|A Chain A, Crystal Structure Of His-Tagged Mouse Pngase C-Terminal
Domain
Length = 221
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 304 KCGKLGLCEDNQCIACPT---EKGLIGWSKECEPKQVNFCGTKDFHYY 348
+CG GL D I + E G + W E QVN G K+ Y
Sbjct: 123 ECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLRSY 170
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 70 VWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTANK 111
+W N G R LS TDGNLV+ +W SNT +
Sbjct: 40 IWATNTGGLSRS-CFLSMQTDGNLVVYNPSNKPIWASNTGGQ 80
>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
Length = 236
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 85 LSFGTDGNLVLAEADGTVVWQSNTANKGV-VRFELLSSGNMVLRDSKGKFIWQS 137
LS TD NLVL + D VW +NTA KG R L +G M + ++ +W S
Sbjct: 154 LSMETDCNLVLFDRDDR-VWSTNTAGKGTGCRAVLQPNGRMDVLTNQNIAVWTS 206
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 89 TDGNLVLAEADGTVVWQSNTANKGVVRFELLSSGNMVLRDSKGKFIWQS 137
+D NLVL ++D VW SNTA R L S G +V+ ++ W S
Sbjct: 34 SDCNLVLFDSD-VRVWASNTAGATGCRAVLQSDGLLVILTAQNTIRWSS 81
>pdb|1XRS|B Chain B, Crystal Structure Of Lysine 5,6-Aminomutase In Complex
With Plp, Cobalamin, And 5'-Deoxyadenosine
Length = 262
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 86 SFGTDGNLVLAEADGTVVWQSNTANKGVVRFELLSSGNMVLRDSKGKFIWQSFDYPTDTL 145
S GTD + V D + + + G+ R+E++ + N+ + + FI ++ + D L
Sbjct: 127 STGTDAHTV--GIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVL 184
Query: 146 LVGQS-----LRVSRVTKLISRL 163
LV Q+ + + +T LI L
Sbjct: 185 LVSQTVTQKNVHIQNMTHLIELL 207
>pdb|4FBD|A Chain A, 2.35 Angstrom Crystal Structure Of Conserved Hypothetical
Protein From Toxoplasma Gondii Me49.
pdb|4FBD|B Chain B, 2.35 Angstrom Crystal Structure Of Conserved Hypothetical
Protein From Toxoplasma Gondii Me49
Length = 243
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 211 TLKSSPETMYKLTLVSSDGNSLVLDRPKYDSTISF 245
+L +P TM + TL+ G+ + LDR Y +++++
Sbjct: 194 SLPMAPITMLRNTLIEEGGSGVALDREAYKASVAY 228
>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 68 RWVWEA-NRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTANK-GVVRFELLSSGNMV 125
R VW + GK N +L DGNLV+ +W SNT + G L N+V
Sbjct: 38 RAVWASGTNGKA--SNCILKMQRDGNLVIYSGS-RAMWASNTNRQDGNYYLILQRDRNVV 94
Query: 126 LRDSKGKFIWQS 137
+ D+ IW S
Sbjct: 95 IYDNSNNAIWAS 106
>pdb|2D04|A Chain A, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|C Chain C, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|E Chain E, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|G Chain G, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 113
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 85 LSFGTDGNLVLAEADGTVVWQSNTANKGV-VRFELLSSGNMVLRDSKGKFIWQS 137
L+ + NLV + G +W S+T +G R L S GN+++ D +W S
Sbjct: 23 LTIQNNCNLVKYQ-HGRQIWASDTDGQGSQCRLTLRSDGNLIIYDDNNMVVWGS 75
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 229 GNSLV-LDRPKYDSTISFLRLSMDGNLRIFTFPREVDWLPEEGRFWLPEEERF 280
GN L D Y TI++ SM F F RE W PE+ +W PE+E F
Sbjct: 142 GNKLSWADLIAYAGTIAYE--SMGLKTFGFAFGREDIWHPEKDIYWGPEKEWF 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,878,057
Number of Sequences: 62578
Number of extensions: 601173
Number of successful extensions: 1281
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 40
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)