Query 043457
Match_columns 423
No_of_seqs 191 out of 1434
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 1.7E-29 3.7E-34 215.7 6.6 103 67-169 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 3.3E-25 7.1E-30 189.7 13.9 110 28-141 5-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 4.3E-24 9.3E-29 182.2 13.7 109 28-140 5-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.8 1.8E-19 3.9E-24 152.8 10.2 101 205-327 4-108 (110)
5 cd01098 PAN_AP_plant Plant PAN 99.6 1E-14 2.2E-19 116.6 7.8 80 337-418 2-84 (84)
6 PF08276 PAN_2: PAN-like domai 99.6 5.1E-15 1.1E-19 114.2 5.6 60 344-403 4-66 (66)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.4 9.9E-13 2.1E-17 105.1 6.2 67 345-417 9-80 (80)
8 smart00108 B_lectin Bulb-type 98.7 6.1E-08 1.3E-12 82.5 9.2 85 84-200 23-111 (114)
9 cd00028 B_lectin Bulb-type man 98.7 1E-07 2.2E-12 81.4 9.2 86 84-201 23-113 (116)
10 smart00473 PAN_AP divergent su 98.5 2.7E-07 5.8E-12 72.0 7.5 72 345-417 4-78 (78)
11 PF01453 B_lectin: D-mannose b 98.5 1.8E-06 3.8E-11 73.8 12.1 100 31-142 12-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.8 2.1E-05 4.6E-10 61.5 4.1 52 349-401 8-59 (73)
13 PF00024 PAN_1: PAN domain Thi 95.0 0.042 9.2E-07 42.4 4.6 52 346-398 3-55 (79)
14 smart00223 APPLE APPLE domain. 94.7 0.043 9.3E-07 43.7 4.1 49 350-399 6-57 (79)
15 PF14295 PAN_4: PAN domain; PD 94.7 0.025 5.4E-07 40.2 2.5 33 365-397 14-51 (51)
16 PF08277 PAN_3: PAN-like domai 90.2 0.75 1.6E-05 35.1 5.3 51 365-417 18-71 (71)
17 smart00605 CW CW domain. 88.9 1.2 2.5E-05 36.3 5.8 53 366-419 21-76 (94)
18 cd01099 PAN_AP_HGF Subfamily o 82.2 1.9 4.1E-05 34.1 3.8 33 366-398 24-58 (80)
19 PF13360 PQQ_2: PQQ-like domai 72.1 19 0.00041 33.2 8.1 71 67-137 13-102 (238)
20 PRK11138 outer membrane biogen 68.6 17 0.00037 37.1 7.5 56 82-137 120-186 (394)
21 TIGR03300 assembly_YfgL outer 66.5 25 0.00054 35.4 8.2 54 83-136 66-130 (377)
22 KOG4649 PQQ (pyrrolo-quinoline 64.3 23 0.0005 34.8 6.8 44 67-110 169-218 (354)
23 PRK11138 outer membrane biogen 59.9 28 0.0006 35.6 7.2 21 117-137 340-361 (394)
24 PF13360 PQQ_2: PQQ-like domai 56.6 27 0.00058 32.2 5.9 49 89-137 1-62 (238)
25 cd00053 EGF Epidermal growth f 55.9 11 0.00024 23.5 2.3 27 302-328 5-32 (36)
26 TIGR03300 assembly_YfgL outer 53.2 67 0.0014 32.3 8.6 71 67-137 85-171 (377)
27 PF01436 NHL: NHL repeat; Int 49.0 29 0.00063 21.5 3.3 21 84-104 6-26 (28)
28 cd00216 PQQ_DH Dehydrogenases 48.9 62 0.0014 34.3 7.9 71 67-137 39-136 (488)
29 PF01683 EB: EB module; Inter 47.5 19 0.00041 25.7 2.6 31 294-327 17-47 (52)
30 TIGR03066 Gem_osc_para_1 Gemma 44.7 53 0.0012 27.9 5.2 51 81-132 34-103 (111)
31 smart00179 EGF_CA Calcium-bind 38.8 33 0.00072 22.1 2.6 30 297-326 3-33 (39)
32 PF05935 Arylsulfotrans: Aryls 36.2 1E+02 0.0022 32.7 7.1 59 67-127 137-206 (477)
33 PF07645 EGF_CA: Calcium-bindi 36.0 11 0.00023 25.9 -0.3 30 297-326 3-34 (42)
34 cd05845 Ig2_L1-CAM_like Second 32.9 66 0.0014 26.4 3.9 30 68-97 35-64 (95)
35 KOG2106 Uncharacterized conser 32.6 5.9E+02 0.013 27.5 11.5 109 34-150 198-329 (626)
36 COG1520 FOG: WD40-like repeat 32.2 1.9E+02 0.0042 29.1 8.1 72 67-138 131-226 (370)
37 cd00054 EGF_CA Calcium-binding 31.4 39 0.00084 21.3 1.9 30 297-326 3-33 (38)
38 PF06006 DUF905: Bacterial pro 29.6 53 0.0012 25.5 2.6 19 124-142 35-53 (70)
39 PF13570 PQQ_3: PQQ-like domai 28.8 64 0.0014 21.4 2.7 9 69-77 3-11 (40)
40 PF05935 Arylsulfotrans: Aryls 28.6 54 0.0012 34.8 3.4 53 90-143 127-187 (477)
41 PLN00033 photosystem II stabil 26.3 1.8E+02 0.004 30.2 6.8 47 90-136 258-306 (398)
42 PF12894 Apc4_WD40: Anaphase-p 26.1 1.5E+02 0.0032 21.0 4.3 18 88-105 30-47 (47)
43 COG1520 FOG: WD40-like repeat 25.6 1.7E+02 0.0036 29.6 6.3 56 82-137 111-179 (370)
44 TIGR03075 PQQ_enz_alc_DH PQQ-d 24.7 3.4E+02 0.0074 29.2 8.7 70 68-137 48-146 (527)
45 cd05852 Ig5_Contactin-1 Fifth 24.0 2.7E+02 0.0058 21.0 5.8 31 67-98 16-46 (73)
46 PF07354 Sp38: Zona-pellucida- 23.8 85 0.0018 30.8 3.4 31 68-98 14-44 (271)
47 smart00564 PQQ beta-propeller 23.7 1.5E+02 0.0033 18.2 3.7 18 88-105 13-31 (33)
48 PF07974 EGF_2: EGF-like domai 22.4 62 0.0014 21.0 1.6 23 303-326 6-28 (32)
49 PF01011 PQQ: PQQ enzyme repea 20.5 1.3E+02 0.0028 19.8 3.0 22 88-109 7-29 (38)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=1.7e-29 Score=215.66 Aligned_cols=103 Identities=47% Similarity=0.738 Sum_probs=76.4
Q ss_pred eeEEEEecCCCcccc---CceEEEcCCCcEEEEecCCcEEEec-cCCCCc--eeEEEEeeCCCeeEEecCCeeEEeecCC
Q 043457 67 FRWVWEANRGKPVRE---NAVLSFGTDGNLVLAEADGTVVWQS-NTANKG--VVRFELLSSGNMVLRDSKGKFIWQSFDY 140 (423)
Q Consensus 67 ~~~vW~Anr~~pv~~---~~~l~l~~dGnLvl~d~~~~~vWst-~~~~~~--~~~~~L~d~GNLVl~~~~~~~~WqSFD~ 140 (423)
+++||+|||+.|+.. ..+|.|+.||||+|++..++++|++ ++.+.+ ...|+|+|+|||||++..+.+|||||||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~ 81 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY 81 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence 478999999999943 4799999999999999998999999 666654 7889999999999999999999999999
Q ss_pred CCcccccCceeecccc----eEEeeecCCCCCC
Q 043457 141 PTDTLLVGQSLRVSRV----TKLISRLSIKENV 169 (423)
Q Consensus 141 PTDTLLPGq~L~~g~~----~~L~Sw~s~~dps 169 (423)
||||+||+|+|+.+.. ..|+||++.+|||
T Consensus 82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999987421 2489999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=3.3e-25 Score=189.68 Aligned_cols=110 Identities=40% Similarity=0.701 Sum_probs=97.5
Q ss_pred CCCceEEeCCCeEEEEEEeCCCCC-eEEEEEEcccCCCceeeEEEEecCCCccccCceEEEcCCCcEEEEecCCcEEEec
Q 043457 28 ADHRMSGIYNDLFNLGFYNTTPNA-YTLALLFGSMDRKAVFRWVWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQS 106 (423)
Q Consensus 28 ~~~~~L~S~~g~F~lGF~~~~~~~-~~l~iw~~~~~~~~~~~~vW~Anr~~pv~~~~~l~l~~dGnLvl~d~~~~~vWst 106 (423)
..++.|+|+++.|++|||.+.... +++.|||...+ .++||.||++.|....++|.|+.||+|+|+|.+|.++|++
T Consensus 5 ~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S 80 (116)
T cd00028 5 SSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS----RTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSS 80 (116)
T ss_pred CCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC----CeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEe
Confidence 467899999999999999876554 88999998753 3689999999986667899999999999999999999999
Q ss_pred cCCC-CceeEEEEeeCCCeeEEecCCeeEEeecCCC
Q 043457 107 NTAN-KGVVRFELLSSGNMVLRDSKGKFIWQSFDYP 141 (423)
Q Consensus 107 ~~~~-~~~~~~~L~d~GNLVl~~~~~~~~WqSFD~P 141 (423)
++.+ .+...|+|+|+|||||++.++.+||||||||
T Consensus 81 ~~~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P 116 (116)
T cd00028 81 NTTRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116 (116)
T ss_pred cccCCCCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence 9876 5567899999999999999999999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=4.3e-24 Score=182.16 Aligned_cols=109 Identities=42% Similarity=0.714 Sum_probs=96.7
Q ss_pred CCCceEEeCCCeEEEEEEeCCCCCeEEEEEEcccCCCceeeEEEEecCCCccccCceEEEcCCCcEEEEecCCcEEEecc
Q 043457 28 ADHRMSGIYNDLFNLGFYNTTPNAYTLALLFGSMDRKAVFRWVWEANRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSN 107 (423)
Q Consensus 28 ~~~~~L~S~~g~F~lGF~~~~~~~~~l~iw~~~~~~~~~~~~vW~Anr~~pv~~~~~l~l~~dGnLvl~d~~~~~vWst~ 107 (423)
..++.|+|+++.|++|||.+....+.++|||...+ .++||+|||+.|+..++.|.|++||+|+|++.+|.++|+++
T Consensus 5 ~~~~~l~s~~~~f~~G~~~~~~q~dgnlV~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~ 80 (114)
T smart00108 5 SSGQTLVSGNSLFELGFFTLIMQNDYNLILYKSSS----RTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSN 80 (114)
T ss_pred CCCCEEecCCCcEeeeccccCCCCCEEEEEEECCC----CcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEec
Confidence 35789999999999999987655678899998753 35899999999987778999999999999999999999999
Q ss_pred CC-CCceeEEEEeeCCCeeEEecCCeeEEeecCC
Q 043457 108 TA-NKGVVRFELLSSGNMVLRDSKGKFIWQSFDY 140 (423)
Q Consensus 108 ~~-~~~~~~~~L~d~GNLVl~~~~~~~~WqSFD~ 140 (423)
+. +.+...|+|+|+|||||++..+++|||||||
T Consensus 81 t~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~ 114 (114)
T smart00108 81 TTGANGNYVLVLLDDGNLVIYDSDGNFLWQSFDY 114 (114)
T ss_pred ccCCCCceEEEEeCCCCEEEECCCCCEEeCCCCC
Confidence 87 5556789999999999999999999999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.80 E-value=1.8e-19 Score=152.79 Aligned_cols=101 Identities=20% Similarity=0.341 Sum_probs=85.2
Q ss_pred CCCcceEeecCCcC----ceeEEEEEcCCCceEEeccCCCCeEEEEEEccCCceEEEeccCCCCCCccCCccccCcceee
Q 043457 205 KGLKNLTLKSSPET----MYKLTLVSSDGNSLVLDRPKYDSTISFLRLSMDGNLRIFTFPREVDWLPEEGRFWLPEEERF 280 (423)
Q Consensus 205 ~~~~~~~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~rl~Ld~dG~lr~y~~~~~~~~~~~~~~~~~~W~~~~ 280 (423)
|+|++..|++.|++ .+.+.|+.++.+.++.+.....+.++|++||++|+||+|.|.+. .+. |.+.|
T Consensus 4 G~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~--~~~--------W~~~~ 73 (110)
T PF00954_consen 4 GPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNES--TQS--------WSVFW 73 (110)
T ss_pred cccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEecC--CCc--------EEEEE
Confidence 47889999999986 35566766666777777776778899999999999999999875 345 99988
Q ss_pred eecccCCCCCCCCCCCCCCCCccCCCCCcccCcCCCCCCCCCCCCcc
Q 043457 281 TLFGKDSRGSNAINWENECQMPDKCGKLGLCEDNQCIACPTEKGLIG 327 (423)
Q Consensus 281 ~~~~~~~~~~~~~~p~~~C~~~g~CG~~g~C~~~~~~~C~C~~g~~~ 327 (423)
. +|.++|++|+.||+||+|+.+..+.|.|++||+.
T Consensus 74 ~------------~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 74 S------------APKDQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred E------------ecccCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 5 4789999999999999999888889999999964
No 5
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.55 E-value=1e-14 Score=116.61 Aligned_cols=80 Identities=25% Similarity=0.416 Sum_probs=64.5
Q ss_pred ccccCCC--CeeeEEEceeccccceeecccCCCCHHHHHHHHhcCCCeEEEEeCCCCCceEecc-ccCCceeeCCCCeEE
Q 043457 337 VNFCGTK--DFHYYKLESVEHYMCRYNDGIESITIEDCARRCSSNCRCVAYFYDTDLSRCWTAF-DLKTLSKVPDSKIVG 413 (423)
Q Consensus 337 ~l~C~~~--~~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCSC~Ay~y~~~~~~C~~~~-~L~~~~~~~~~~~~~ 413 (423)
+++|... .+.|++++++++|+..+.. ...++++|+++||+||+|+||+|..++++|++|. .+.+.+.....+.++
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 79 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNNGSGGCLLWNGLLNNLRSLSSGGGTL 79 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecCCCCeEEEEeceecceEeecCCCcEE
Confidence 4567654 2689999999999765543 4689999999999999999999987778999996 677766644456899
Q ss_pred EEEee
Q 043457 414 FLKFP 418 (423)
Q Consensus 414 yiKv~ 418 (423)
|||||
T Consensus 80 yiKv~ 84 (84)
T cd01098 80 YLRLA 84 (84)
T ss_pred EEEeC
Confidence 99996
No 6
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.55 E-value=5.1e-15 Score=114.16 Aligned_cols=60 Identities=28% Similarity=0.499 Sum_probs=51.8
Q ss_pred CeeeEEEceeccccceeecccCCCCHHHHHHHHhcCCCeEEEEeCC--CCCceEecc-ccCCc
Q 043457 344 DFHYYKLESVEHYMCRYNDGIESITIEDCARRCSSNCRCVAYFYDT--DLSRCWTAF-DLKTL 403 (423)
Q Consensus 344 ~~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCSC~Ay~y~~--~~~~C~~~~-~L~~~ 403 (423)
.+.|++|++|++|+.....+..++++++|+++||+||||+||+|.+ ++++|++|. +|+|+
T Consensus 4 ~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 4 GDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 4699999999999986655545689999999999999999999975 578999995 88875
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.36 E-value=9.9e-13 Score=105.12 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=57.8
Q ss_pred eeeEEEceeccccceeecccCCCCHHHHHHHHhc---CCCeEEEEeCCCCCceEecc-cc-CCceeeCCCCeEEEEEe
Q 043457 345 FHYYKLESVEHYMCRYNDGIESITIEDCARRCSS---NCRCVAYFYDTDLSRCWTAF-DL-KTLSKVPDSKIVGFLKF 417 (423)
Q Consensus 345 ~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~---nCSC~Ay~y~~~~~~C~~~~-~L-~~~~~~~~~~~~~yiKv 417 (423)
..|+++.+|+.|++.. .++++|+++|++ ||||+||+|...+.+|++|. +| .++++..+++.++|||.
T Consensus 9 g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r~ 80 (80)
T cd00129 9 GTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNSMSGVRKEFSHGFDLYENK 80 (80)
T ss_pred CeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcchhhHHhccCCCceeEeEC
Confidence 4789999999887542 689999999999 99999999976567899996 88 89988877889999984
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.73 E-value=6.1e-08 Score=82.49 Aligned_cols=85 Identities=32% Similarity=0.529 Sum_probs=62.1
Q ss_pred eEEEcCCCcEEEEecC-CcEEEeccCCCC--ceeEEEEeeCCCeeEEecCCeeEEeecCCCCcccccCceeecccceEEe
Q 043457 84 VLSFGTDGNLVLAEAD-GTVVWQSNTANK--GVVRFELLSSGNMVLRDSKGKFIWQSFDYPTDTLLVGQSLRVSRVTKLI 160 (423)
Q Consensus 84 ~l~l~~dGnLvl~d~~-~~~vWst~~~~~--~~~~~~L~d~GNLVl~~~~~~~~WqSFD~PTDTLLPGq~L~~g~~~~L~ 160 (423)
++.++.||+||+++.. +.++|++++... ....+.|+++|||||++.++.+||+|= | .
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~---t---------------~-- 82 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSN---T---------------T-- 82 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEec---c---------------c--
Confidence 4566789999999865 579999998643 236789999999999998899999971 0 0
Q ss_pred eecCCCCCCCCCcEEEecCCc-ceeeeccCCCCCceEEEec
Q 043457 161 SRLSIKENVDGPHSFVMEPKR-LALYYKSSNGPRPVVYYTF 200 (423)
Q Consensus 161 Sw~s~~dps~G~ysl~~~~~~-~~~~~~~~~~~~~~~YW~~ 200 (423)
...|.|.+.|+++| +++|-. . + .+.|.+
T Consensus 83 -------~~~~~~~~~L~ddGnlvl~~~-~-~---~~~W~S 111 (114)
T smart00108 83 -------GANGNYVLVLLDDGNLVIYDS-D-G---NFLWQS 111 (114)
T ss_pred -------CCCCceEEEEeCCCCEEEECC-C-C---CEEeCC
Confidence 12456788898776 666532 1 2 367865
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.68 E-value=1e-07 Score=81.44 Aligned_cols=86 Identities=31% Similarity=0.499 Sum_probs=62.8
Q ss_pred eEEEcC-CCcEEEEecC-CcEEEeccCCC--CceeEEEEeeCCCeeEEecCCeeEEeecCCCCcccccCceeecccceEE
Q 043457 84 VLSFGT-DGNLVLAEAD-GTVVWQSNTAN--KGVVRFELLSSGNMVLRDSKGKFIWQSFDYPTDTLLVGQSLRVSRVTKL 159 (423)
Q Consensus 84 ~l~l~~-dGnLvl~d~~-~~~vWst~~~~--~~~~~~~L~d~GNLVl~~~~~~~~WqSFD~PTDTLLPGq~L~~g~~~~L 159 (423)
++.++. ||+||+++.. +.++|++++.. .....+.|+++|||||++.++.+||+|=-
T Consensus 23 ~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~-------------------- 82 (116)
T cd00028 23 KLIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNT-------------------- 82 (116)
T ss_pred cCCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEecc--------------------
Confidence 455676 9999999865 57999999865 24567999999999999999999999720
Q ss_pred eeecCCCCCCCCCcEEEecCCc-ceeeeccCCCCCceEEEecC
Q 043457 160 ISRLSIKENVDGPHSFVMEPKR-LALYYKSSNGPRPVVYYTFP 201 (423)
Q Consensus 160 ~Sw~s~~dps~G~ysl~~~~~~-~~~~~~~~~~~~~~~YW~~g 201 (423)
+ ...+.+.+.|+++| +++|-.. + .+.|.+.
T Consensus 83 -~------~~~~~~~~~L~ddGnlvl~~~~--~---~~~W~Sf 113 (116)
T cd00028 83 -T------RVNGNYVLVLLDDGNLVLYDSD--G---NFLWQSF 113 (116)
T ss_pred -c------CCCCceEEEEeCCCCEEEECCC--C---CEEEcCC
Confidence 0 02456888898776 7765321 2 4578764
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.55 E-value=2.7e-07 Score=71.95 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=55.6
Q ss_pred eeeEEEceeccccceeecccCCCCHHHHHHHHhc-CCCeEEEEeCCCCCceEecc--ccCCceeeCCCCeEEEEEe
Q 043457 345 FHYYKLESVEHYMCRYNDGIESITIEDCARRCSS-NCRCVAYFYDTDLSRCWTAF--DLKTLSKVPDSKIVGFLKF 417 (423)
Q Consensus 345 ~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~-nCSC~Ay~y~~~~~~C~~~~--~L~~~~~~~~~~~~~yiKv 417 (423)
..|+.++++.++...... ....++++|++.|++ +|+|.||.|..+++.|++|. .+.+.+...+.+.++|.|.
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~~~ 78 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYEKI 78 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEEeC
Confidence 468899999987543322 345799999999999 99999999976578999996 5666665566667888763
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.51 E-value=1.8e-06 Score=73.76 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=67.7
Q ss_pred ceEEeCCCeEEEEEEeCCCCCeEEEEEEcccCCCceeeEEEEe-cCCCccccCceEEEcCCCcEEEEecCCcEEEeccCC
Q 043457 31 RMSGIYNDLFNLGFYNTTPNAYTLALLFGSMDRKAVFRWVWEA-NRGKPVRENAVLSFGTDGNLVLAEADGTVVWQSNTA 109 (423)
Q Consensus 31 ~~L~S~~g~F~lGF~~~~~~~~~l~iw~~~~~~~~~~~~vW~A-nr~~pv~~~~~l~l~~dGnLvl~d~~~~~vWst~~~ 109 (423)
+.+.+.++.+.|-|+. +++ |.|+... .+++|.. +........+.+.|++||||||+|..+.++|++..
T Consensus 12 ~p~~~~s~~~~L~l~~--dGn--Lvl~~~~------~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~- 80 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQS--DGN--LVLYDSN------GSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFD- 80 (114)
T ss_dssp EEEEECETTEEEEEET--TSE--EEEEETT------TEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTT-
T ss_pred cccccccccccceECC--CCe--EEEEcCC------CCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecC-
Confidence 4565655899999985 453 4444332 2569999 44433335689999999999999999999999943
Q ss_pred CCceeEEEEee--CCCeeEEecCCeeEEeecCCCC
Q 043457 110 NKGVVRFELLS--SGNMVLRDSKGKFIWQSFDYPT 142 (423)
Q Consensus 110 ~~~~~~~~L~d--~GNLVl~~~~~~~~WqSFD~PT 142 (423)
....+.+.+++ +||++ +.....++|.|=+.|+
T Consensus 81 ~ptdt~L~~q~l~~~~~~-~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 81 YPTDTLLPGQKLGDGNVT-GKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SSS-EEEEEET--TSEEE-EESTSSEEEESS----
T ss_pred CCccEEEeccCcccCCCc-cccceEEeECCCCCCC
Confidence 33445677777 89988 7666789999977764
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.82 E-value=2.1e-05 Score=61.53 Aligned_cols=52 Identities=17% Similarity=0.395 Sum_probs=40.2
Q ss_pred EEceeccccceeecccCCCCHHHHHHHHhcCCCeEEEEeCCCCCceEeccccC
Q 043457 349 KLESVEHYMCRYNDGIESITIEDCARRCSSNCRCVAYFYDTDLSRCWTAFDLK 401 (423)
Q Consensus 349 ~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCSC~Ay~y~~~~~~C~~~~~L~ 401 (423)
.+++++++..+..... ..+.++|++.|+.+|+|.||.|....+.|+++....
T Consensus 8 ~~~~~~~~g~d~~~~~-~~s~~~Cq~~C~~~~~C~afT~~~~~~~C~lk~~~~ 59 (73)
T cd01100 8 QGSNVDFRGGDLSTVF-ASSAEQCQAACTADPGCLAFTYNTKSKKCFLKSSEG 59 (73)
T ss_pred ccCCCccccCCcceee-cCCHHHHHHHcCCCCCceEEEEECCCCeEEcccCCC
Confidence 3457777665544332 468999999999999999999987788999997543
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=94.95 E-value=0.042 Score=42.42 Aligned_cols=52 Identities=17% Similarity=0.425 Sum_probs=40.1
Q ss_pred eeEEEceeccccceeecccCCCCHHHHHHHHhcCCC-eEEEEeCCCCCceEecc
Q 043457 346 HYYKLESVEHYMCRYNDGIESITIEDCARRCSSNCR-CVAYFYDTDLSRCWTAF 398 (423)
Q Consensus 346 ~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCS-C~Ay~y~~~~~~C~~~~ 398 (423)
.|.++++..+........ ...++++|.++|+.+=. |.+|.|......|.+..
T Consensus 3 ~f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~L~~ 55 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDPSSKTCYLSS 55 (79)
T ss_dssp TEEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEETTTTEEEEEC
T ss_pred CeEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEECCCCEEEEcC
Confidence 366777776655433333 34599999999999999 99999988788999974
No 14
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=94.75 E-value=0.043 Score=43.74 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=39.3
Q ss_pred EceeccccceeecccCCCCHHHHHHHHhcCCCeEEEEeCCCCC---ceEeccc
Q 043457 350 LESVEHYMCRYNDGIESITIEDCARRCSSNCRCVAYFYDTDLS---RCWTAFD 399 (423)
Q Consensus 350 l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCSC~Ay~y~~~~~---~C~~~~~ 399 (423)
.++++++..+...+. ..+.++|++.|..+=.|.||.|..... .|+++..
T Consensus 6 ~~~~df~G~Dl~~~~-~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTVY-VPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeeee-cCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 367777776665443 478999999999999999999976666 8999964
No 15
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=94.74 E-value=0.025 Score=40.21 Aligned_cols=33 Identities=21% Similarity=0.671 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEeCC-----CCCceEec
Q 043457 365 ESITIEDCARRCSSNCRCVAYFYDT-----DLSRCWTA 397 (423)
Q Consensus 365 ~~~s~~~C~~~CL~nCSC~Ay~y~~-----~~~~C~~~ 397 (423)
...+.++|.++|..+=.|.+|.|.. ..+.|+|+
T Consensus 14 ~~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 14 TASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ----HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred cCCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 3468999999999999999999975 45778875
No 16
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=90.18 E-value=0.75 Score=35.11 Aligned_cols=51 Identities=22% Similarity=0.515 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEeCCCCCceEecc--ccCCceee-CCCCeEEEEEe
Q 043457 365 ESITIEDCARRCSSNCRCVAYFYDTDLSRCWTAF--DLKTLSKV-PDSKIVGFLKF 417 (423)
Q Consensus 365 ~~~s~~~C~~~CL~nCSC~Ay~y~~~~~~C~~~~--~L~~~~~~-~~~~~~~yiKv 417 (423)
...+.++|-+.|..+=.|.++.++ ...|.+.. .+..+++. +..+..+-||+
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~--~~~C~~y~~~~i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD--SGKCYLYNYGSISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC--CCCEEEEEcCCEEEEEEeecCCCeEEEEEC
Confidence 357899999999999999999887 56899873 56566654 34445555664
No 17
>smart00605 CW CW domain.
Probab=88.91 E-value=1.2 Score=36.35 Aligned_cols=53 Identities=17% Similarity=0.429 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhcCCCeEEEEeCCCCCceEecc--ccCCceeeCC-CCeEEEEEeeC
Q 043457 366 SITIEDCARRCSSNCRCVAYFYDTDLSRCWTAF--DLKTLSKVPD-SKIVGFLKFPN 419 (423)
Q Consensus 366 ~~s~~~C~~~CL~nCSC~Ay~y~~~~~~C~~~~--~L~~~~~~~~-~~~~~yiKv~~ 419 (423)
..+.++|...|..+..|+.+.... ...|.+.. .+..+++... .+..+=||+..
T Consensus 21 ~~sw~~Ci~~C~~~~~Cvlay~~~-~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~ 76 (94)
T smart00605 21 TLSWDECIQKCYEDSNCVLAYGNS-SETCYLFSYGTVLTVKKLSSSSGKKVAFKVST 76 (94)
T ss_pred CCCHHHHHHHHhCCCceEEEecCC-CCceEEEEcCCeEEEEEccCCCCcEEEEEEeC
Confidence 478999999999999999886643 46898863 5666776543 45667778754
No 18
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=82.17 E-value=1.9 Score=34.10 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHhc--CCCeEEEEeCCCCCceEecc
Q 043457 366 SITIEDCARRCSS--NCRCVAYFYDTDLSRCWTAF 398 (423)
Q Consensus 366 ~~s~~~C~~~CL~--nCSC~Ay~y~~~~~~C~~~~ 398 (423)
..++++|.++|++ +=.|.++.|......|.+-.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~ 58 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYKSKECILSD 58 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeC
Confidence 4799999999999 88999999977788999864
No 19
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=72.12 E-value=19 Score=33.24 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=44.7
Q ss_pred eeEEEEecC----CCcc----ccCceEEE-cCCCcEEEEec-CCcEEEeccCCCCc--------eeEEEEeeCCCeeEEe
Q 043457 67 FRWVWEANR----GKPV----RENAVLSF-GTDGNLVLAEA-DGTVVWQSNTANKG--------VVRFELLSSGNMVLRD 128 (423)
Q Consensus 67 ~~~vW~Anr----~~pv----~~~~~l~l-~~dGnLvl~d~-~~~~vWst~~~~~~--------~~~~~L~d~GNLVl~~ 128 (423)
...+|..+- ..++ .....|.+ +.+|.|+.+|. +|+.+|+....+.. ........+|.|+.+|
T Consensus 13 G~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d 92 (238)
T PF13360_consen 13 GKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALD 92 (238)
T ss_dssp TEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecc
Confidence 356787753 2222 13344444 58899999996 89999998764321 0112233455677777
Q ss_pred -cCCeeEEee
Q 043457 129 -SKGKFIWQS 137 (423)
Q Consensus 129 -~~~~~~WqS 137 (423)
.+|+++|+.
T Consensus 93 ~~tG~~~W~~ 102 (238)
T PF13360_consen 93 AKTGKVLWSI 102 (238)
T ss_dssp TTTSCEEEEE
T ss_pred cCCcceeeee
Confidence 689999995
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=68.58 E-value=17 Score=37.15 Aligned_cols=56 Identities=23% Similarity=0.429 Sum_probs=37.2
Q ss_pred CceEEE-cCCCcEEEEec-CCcEEEeccCCCC----ce----eEEEEeeCCCeeEEec-CCeeEEee
Q 043457 82 NAVLSF-GTDGNLVLAEA-DGTVVWQSNTANK----GV----VRFELLSSGNMVLRDS-KGKFIWQS 137 (423)
Q Consensus 82 ~~~l~l-~~dGnLvl~d~-~~~~vWst~~~~~----~~----~~~~L~d~GNLVl~~~-~~~~~WqS 137 (423)
...+.+ ..+|.|+-+|. +|+++|+....+. .. .......+|.|+-+|. +|+++|+-
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 344555 46789988885 7999999876432 11 1122345677888885 68999986
No 21
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.47 E-value=25 Score=35.43 Aligned_cols=54 Identities=24% Similarity=0.549 Sum_probs=34.5
Q ss_pred ceEEE-cCCCcEEEEe-cCCcEEEeccCCCC---ce-----eEEEEeeCCCeeEEec-CCeeEEe
Q 043457 83 AVLSF-GTDGNLVLAE-ADGTVVWQSNTANK---GV-----VRFELLSSGNMVLRDS-KGKFIWQ 136 (423)
Q Consensus 83 ~~l~l-~~dGnLvl~d-~~~~~vWst~~~~~---~~-----~~~~L~d~GNLVl~~~-~~~~~Wq 136 (423)
..|.+ ..+|.|+-+| .+|+++|....... .+ ....-..+|+|+.+|. +|+++|+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR 130 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee
Confidence 34444 4668888888 57899998765432 11 1122235677777775 6889997
No 22
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.28 E-value=23 Score=34.82 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=33.8
Q ss_pred eeEEEEecCCCccccC-----ceEEE-cCCCcEEEEecCCcEEEeccCCC
Q 043457 67 FRWVWEANRGKPVREN-----AVLSF-GTDGNLVLAEADGTVVWQSNTAN 110 (423)
Q Consensus 67 ~~~vW~Anr~~pv~~~-----~~l~l-~~dGnLvl~d~~~~~vWst~~~~ 110 (423)
.+..|.|.|..|+-.+ ..+.+ +-||+|.-.|+.|+.||.-.+.+
T Consensus 169 ~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 169 STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 4789999999998653 23444 57999999999999999766554
No 23
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=59.89 E-value=28 Score=35.56 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=13.8
Q ss_pred EEeeCCCeeEEec-CCeeEEee
Q 043457 117 ELLSSGNMVLRDS-KGKFIWQS 137 (423)
Q Consensus 117 ~L~d~GNLVl~~~-~~~~~WqS 137 (423)
...++|.|...|. +|+++|+-
T Consensus 340 v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 340 VGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEeCCCEEEEEECCCCCEEEEE
Confidence 3455677776664 57778875
No 24
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=56.59 E-value=27 Score=32.21 Aligned_cols=49 Identities=24% Similarity=0.519 Sum_probs=33.1
Q ss_pred CCCcEEEEec-CCcEEEeccCC---CCce--e------EEEEeeCCCeeEEec-CCeeEEee
Q 043457 89 TDGNLVLAEA-DGTVVWQSNTA---NKGV--V------RFELLSSGNMVLRDS-KGKFIWQS 137 (423)
Q Consensus 89 ~dGnLvl~d~-~~~~vWst~~~---~~~~--~------~~~L~d~GNLVl~~~-~~~~~WqS 137 (423)
++|.|..+|. +|+.+|+.... ...+ . ......+|+|+.+|. +|+++|+-
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEe
Confidence 3688888897 89999998652 1111 0 112247778888885 79999986
No 25
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=55.90 E-value=11 Score=23.52 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=19.1
Q ss_pred ccCCCCCcccCcC-CCCCCCCCCCCccC
Q 043457 302 PDKCGKLGLCEDN-QCIACPTEKGLIGW 328 (423)
Q Consensus 302 ~g~CG~~g~C~~~-~~~~C~C~~g~~~~ 328 (423)
...|..++.|... ....|.|+.||...
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4568888888753 34569999998643
No 26
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.24 E-value=67 Score=32.32 Aligned_cols=71 Identities=14% Similarity=0.408 Sum_probs=45.5
Q ss_pred eeEEEEecCCCcc-----ccCceEEE-cCCCcEEEEec-CCcEEEeccCCCC----c----eeEEEEeeCCCeeEEec-C
Q 043457 67 FRWVWEANRGKPV-----RENAVLSF-GTDGNLVLAEA-DGTVVWQSNTANK----G----VVRFELLSSGNMVLRDS-K 130 (423)
Q Consensus 67 ~~~vW~Anr~~pv-----~~~~~l~l-~~dGnLvl~d~-~~~~vWst~~~~~----~----~~~~~L~d~GNLVl~~~-~ 130 (423)
.+++|..+-..++ -+...+.+ +.+|.|+.+|. +|+++|.....+. . .....-..+|.|+..|. +
T Consensus 85 G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~t 164 (377)
T TIGR03300 85 GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAAT 164 (377)
T ss_pred CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCC
Confidence 4678876544333 23445555 56899999887 7999998765431 1 11122235678888885 6
Q ss_pred CeeEEee
Q 043457 131 GKFIWQS 137 (423)
Q Consensus 131 ~~~~WqS 137 (423)
|+++|+-
T Consensus 165 G~~~W~~ 171 (377)
T TIGR03300 165 GERLWTY 171 (377)
T ss_pred CceeeEE
Confidence 8999984
No 27
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=49.02 E-value=29 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=11.7
Q ss_pred eEEEcCCCcEEEEecCCcEEE
Q 043457 84 VLSFGTDGNLVLAEADGTVVW 104 (423)
Q Consensus 84 ~l~l~~dGnLvl~d~~~~~vW 104 (423)
-+.+..+|+|++.|..+..||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 345556666666665544443
No 28
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=48.87 E-value=62 Score=34.30 Aligned_cols=71 Identities=25% Similarity=0.501 Sum_probs=44.2
Q ss_pred eeEEEEecCC-------CccccCceEEE-cCCCcEEEEec-CCcEEEeccCCCC-----------ce------eEEEEee
Q 043457 67 FRWVWEANRG-------KPVRENAVLSF-GTDGNLVLAEA-DGTVVWQSNTANK-----------GV------VRFELLS 120 (423)
Q Consensus 67 ~~~vW~Anr~-------~pv~~~~~l~l-~~dGnLvl~d~-~~~~vWst~~~~~-----------~~------~~~~L~d 120 (423)
.+++|..+-. .|+-...++.+ +.+|.|+-+|. .|+++|+...... ++ ....-..
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~ 118 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF 118 (488)
T ss_pred ceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC
Confidence 3577877643 34444455555 46799988885 6899998764321 00 0111124
Q ss_pred CCCeeEEec-CCeeEEee
Q 043457 121 SGNMVLRDS-KGKFIWQS 137 (423)
Q Consensus 121 ~GNLVl~~~-~~~~~WqS 137 (423)
+|.|+-+|. +|+++|+-
T Consensus 119 ~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 119 DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCeEEEEECCCCCEeeee
Confidence 677777776 68999994
No 29
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=47.54 E-value=19 Score=25.71 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=25.1
Q ss_pred CCCCCCCCccCCCCCcccCcCCCCCCCCCCCCcc
Q 043457 294 NWENECQMPDKCGKLGLCEDNQCIACPTEKGLIG 327 (423)
Q Consensus 294 ~p~~~C~~~g~CG~~g~C~~~~~~~C~C~~g~~~ 327 (423)
.|.+.|....-|-.+++|..+ .|.|++||..
T Consensus 17 ~~g~~C~~~~qC~~~s~C~~g---~C~C~~g~~~ 47 (52)
T PF01683_consen 17 QPGESCESDEQCIGGSVCVNG---RCQCPPGYVE 47 (52)
T ss_pred CCCCCCCCcCCCCCcCEEcCC---EeECCCCCEe
Confidence 467789999999999999644 5889988754
No 30
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=44.70 E-value=53 Score=27.93 Aligned_cols=51 Identities=24% Similarity=0.489 Sum_probs=30.7
Q ss_pred cCceEEEcCCCcEEEEecCCcE------EEecc---------CCCC----ceeEEEEeeCCCeeEEecCCe
Q 043457 81 ENAVLSFGTDGNLVLAEADGTV------VWQSN---------TANK----GVVRFELLSSGNMVLRDSKGK 132 (423)
Q Consensus 81 ~~~~l~l~~dGnLvl~d~~~~~------vWst~---------~~~~----~~~~~~L~d~GNLVl~~~~~~ 132 (423)
....|.|..||.|+|...++.- -|+-. ..+. .++ ..-+++|-|||.|++|.
T Consensus 34 ~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vt-v~~l~~~~Lvl~d~dg~ 103 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLT-VKKLTDDELVGKDPDGK 103 (111)
T ss_pred CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEE-EEEecCCeEEEEcCCCC
Confidence 4578999999999987664332 13211 0011 111 22358889999998775
No 31
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=38.78 E-value=33 Score=22.05 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=21.1
Q ss_pred CCCCCccCCCCCcccCcC-CCCCCCCCCCCc
Q 043457 297 NECQMPDKCGKLGLCEDN-QCIACPTEKGLI 326 (423)
Q Consensus 297 ~~C~~~g~CG~~g~C~~~-~~~~C~C~~g~~ 326 (423)
+.|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567654578888889643 344699999875
No 32
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=36.23 E-value=1e+02 Score=32.69 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=26.6
Q ss_pred eeEEEEecCCCccccCceEEEcCCCcEE--------EEecCCcEEEeccCCCCc---eeEEEEeeCCCeeEE
Q 043457 67 FRWVWEANRGKPVRENAVLSFGTDGNLV--------LAEADGTVVWQSNTANKG---VVRFELLSSGNMVLR 127 (423)
Q Consensus 67 ~~~vW~Anr~~pv~~~~~l~l~~dGnLv--------l~d~~~~~vWst~~~~~~---~~~~~L~d~GNLVl~ 127 (423)
+.|+|.-........ .+.+..+|+|+ ..|-.|+++|.-...+.. --.+..+++||++++
T Consensus 137 G~Vrw~~~~~~~~~~--~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l 206 (477)
T PF05935_consen 137 GDVRWYLPLDSGSDN--SFKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLIL 206 (477)
T ss_dssp S-EEEEE-GGGT--S--SEEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEE
T ss_pred ccEEEEEccCccccc--eeeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEE
Confidence 357888765432111 14444555554 457778999986654422 133677888988775
No 33
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=35.95 E-value=11 Score=25.88 Aligned_cols=30 Identities=23% Similarity=0.606 Sum_probs=22.9
Q ss_pred CCCCCc-cCCCCCcccCc-CCCCCCCCCCCCc
Q 043457 297 NECQMP-DKCGKLGLCED-NQCIACPTEKGLI 326 (423)
Q Consensus 297 ~~C~~~-g~CG~~g~C~~-~~~~~C~C~~g~~ 326 (423)
|.|... ..|..++.|.. .....|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 678774 47999999965 3455699999986
No 34
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=32.86 E-value=66 Score=26.40 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEecCCCccccCceEEEcCCCcEEEEe
Q 043457 68 RWVWEANRGKPVRENAVLSFGTDGNLVLAE 97 (423)
Q Consensus 68 ~~vW~Anr~~pv~~~~~l~l~~dGnLvl~d 97 (423)
++.|+-+....+....++.+..+|||.+.+
T Consensus 35 ~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 35 RIYWMNSDLLHITQDERVSMGQNGNLYFAN 64 (95)
T ss_pred EEEEECCCCccccccccEEECCCceEEEEE
Confidence 578885544445556788888889998854
No 35
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=32.57 E-value=5.9e+02 Score=27.52 Aligned_cols=109 Identities=21% Similarity=0.458 Sum_probs=66.3
Q ss_pred EeCCCeEEEEEEeCCCCCeEEEEEEcccCCCceeeEEEEecCCCccc------c---C--ceEEEcCCCcEEEEecCCcE
Q 043457 34 GIYNDLFNLGFYNTTPNAYTLALLFGSMDRKAVFRWVWEANRGKPVR------E---N--AVLSFGTDGNLVLAEADGTV 102 (423)
Q Consensus 34 ~S~~g~F~lGF~~~~~~~~~l~iw~~~~~~~~~~~~vW~Anr~~pv~------~---~--~~l~l~~dGnLvl~d~~~~~ 102 (423)
.|..+.|++-|.+..++ |-|-+++. .-..|....+.-+. . . -.++|.++|..+--|.+|.+
T Consensus 198 ~sne~v~~a~FHPtd~n---liit~Gk~-----H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i 269 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPN---LIITCGKG-----HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNI 269 (626)
T ss_pred eccceEEEEEeccCCCc---EEEEeCCc-----eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceE
Confidence 46678899999986554 33445542 12355433221111 1 1 14667888988888888874
Q ss_pred -EEeccCC---------CCceeEEEEeeCCCeeEEecCC-eeEEee-cCCCCcccccCce
Q 043457 103 -VWQSNTA---------NKGVVRFELLSSGNMVLRDSKG-KFIWQS-FDYPTDTLLVGQS 150 (423)
Q Consensus 103 -vWst~~~---------~~~~~~~~L~d~GNLVl~~~~~-~~~WqS-FD~PTDTLLPGq~ 150 (423)
||+-.+. ..++-.+.|+.+|-|+=-..+. -++|.. ..---+|=||.|.
T Consensus 270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence 8987643 2356678999999998722233 378874 2223567777665
No 36
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=32.15 E-value=1.9e+02 Score=29.09 Aligned_cols=72 Identities=28% Similarity=0.483 Sum_probs=44.4
Q ss_pred eeEEEEecCCC-c------cccCceEEEc-CCCcEEEEecC-CcEEEeccCC---CC---c-e----eEEEE-ee--CCC
Q 043457 67 FRWVWEANRGK-P------VRENAVLSFG-TDGNLVLAEAD-GTVVWQSNTA---NK---G-V----VRFEL-LS--SGN 123 (423)
Q Consensus 67 ~~~vW~Anr~~-p------v~~~~~l~l~-~dGnLvl~d~~-~~~vWst~~~---~~---~-~----~~~~L-~d--~GN 123 (423)
.+.+|..+... + +.....+.+. .+|.|+-++.+ |+.+|..... .. + + ..+.+ .+ +|+
T Consensus 131 G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~ 210 (370)
T COG1520 131 GTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGI 210 (370)
T ss_pred CcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcce
Confidence 46789887766 2 2234555555 68999988886 9999995432 11 0 0 01112 22 456
Q ss_pred eeEEec-CCeeEEeec
Q 043457 124 MVLRDS-KGKFIWQSF 138 (423)
Q Consensus 124 LVl~~~-~~~~~WqSF 138 (423)
|+-.+. +|+.+|+.+
T Consensus 211 ~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 211 LYALNAEDGTLKWSQK 226 (370)
T ss_pred EEEEEccCCcEeeeee
Confidence 776665 788899853
No 37
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=31.40 E-value=39 Score=21.30 Aligned_cols=30 Identities=23% Similarity=0.604 Sum_probs=20.4
Q ss_pred CCCCCccCCCCCcccCcC-CCCCCCCCCCCc
Q 043457 297 NECQMPDKCGKLGLCEDN-QCIACPTEKGLI 326 (423)
Q Consensus 297 ~~C~~~g~CG~~g~C~~~-~~~~C~C~~g~~ 326 (423)
+.|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567654568777888643 335699998875
No 38
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=29.59 E-value=53 Score=25.45 Aligned_cols=19 Identities=26% Similarity=1.055 Sum_probs=11.0
Q ss_pred eeEEecCCeeEEeecCCCC
Q 043457 124 MVLRDSKGKFIWQSFDYPT 142 (423)
Q Consensus 124 LVl~~~~~~~~WqSFD~PT 142 (423)
||++|.+|..+|..|.+--
T Consensus 35 lvvRd~~g~mvWRaWNFEp 53 (70)
T PF06006_consen 35 LVVRDTEGQMVWRAWNFEP 53 (70)
T ss_dssp EEEE-SS--EEEEEESSST
T ss_pred EEEEcCCCcEEEEeeccCC
Confidence 6777777778887776543
No 39
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.77 E-value=64 Score=21.41 Aligned_cols=9 Identities=22% Similarity=0.700 Sum_probs=3.8
Q ss_pred EEEEecCCC
Q 043457 69 WVWEANRGK 77 (423)
Q Consensus 69 ~vW~Anr~~ 77 (423)
++|......
T Consensus 3 ~~W~~~~~~ 11 (40)
T PF13570_consen 3 VLWSYDTGG 11 (40)
T ss_dssp EEEEEE-SS
T ss_pred eeEEEECCC
Confidence 355554443
No 40
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=28.61 E-value=54 Score=34.84 Aligned_cols=53 Identities=26% Similarity=0.547 Sum_probs=31.2
Q ss_pred CCcEEEEecCCcEEEeccCCCCceeEEEEeeCCCeeEEe--------cCCeeEEeecCCCCc
Q 043457 90 DGNLVLAEADGTVVWQSNTANKGVVRFELLSSGNMVLRD--------SKGKFIWQSFDYPTD 143 (423)
Q Consensus 90 dGnLvl~d~~~~~vWst~~~~~~~~~~~L~d~GNLVl~~--------~~~~~~WqSFD~PTD 143 (423)
.+..+++|.+|.++|-..........+..+++|+|.... -.|+++|+ ++.|..
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~-~~l~~~ 187 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLLGKVIWE-YDLPGG 187 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT--EEEE-EE--TT
T ss_pred CceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCCCCEEEe-eecCCc
Confidence 477888999999999876543222226778999998654 35889999 676663
No 41
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=26.28 E-value=1.8e+02 Score=30.20 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCcEEEEecCCcEEEeccCCC--CceeEEEEeeCCCeeEEecCCeeEEe
Q 043457 90 DGNLVLAEADGTVVWQSNTAN--KGVVRFELLSSGNMVLRDSKGKFIWQ 136 (423)
Q Consensus 90 dGnLvl~d~~~~~vWst~~~~--~~~~~~~L~d~GNLVl~~~~~~~~Wq 136 (423)
.|++++.+.+|...|..-... .....+...++|.|+|..+.|.++|.
T Consensus 258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S 306 (398)
T PLN00033 258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS 306 (398)
T ss_pred CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe
Confidence 344444444444456533222 22344566788999998877776654
No 42
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=26.12 E-value=1.5e+02 Score=20.98 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=12.2
Q ss_pred cCCCcEEEEecCCcEEEe
Q 043457 88 GTDGNLVLAEADGTVVWQ 105 (423)
Q Consensus 88 ~~dGnLvl~d~~~~~vWs 105 (423)
+.+|.+.|+.-+++.||+
T Consensus 30 t~~g~v~v~Rl~~qriw~ 47 (47)
T PF12894_consen 30 TEDGEVLVYRLNWQRIWS 47 (47)
T ss_pred ECCCeEEEEECCCcCccC
Confidence 556777777666666764
No 43
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=25.62 E-value=1.7e+02 Score=29.58 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=38.9
Q ss_pred CceEEE-cCCCcEEEEec-CCcEEEeccCCC-----Ccee---EEEE-e-eCCCeeEEecC-CeeEEee
Q 043457 82 NAVLSF-GTDGNLVLAEA-DGTVVWQSNTAN-----KGVV---RFEL-L-SSGNMVLRDSK-GKFIWQS 137 (423)
Q Consensus 82 ~~~l~l-~~dGnLvl~d~-~~~~vWst~~~~-----~~~~---~~~L-~-d~GNLVl~~~~-~~~~WqS 137 (423)
.++|.+ +.+|.|.-+|. +|+.+|+.+..+ .... ...+ . ++|.|+-.+.+ |+.+|+=
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 356666 56787888888 899999988766 1111 1122 2 67999888876 8999984
No 44
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=24.68 E-value=3.4e+02 Score=29.22 Aligned_cols=70 Identities=20% Similarity=0.445 Sum_probs=42.9
Q ss_pred eEEEEecCC-------CccccCceEEE-cCCCcEEEEec-CCcEEEeccCCCC--------------cee----EEEE-e
Q 043457 68 RWVWEANRG-------KPVRENAVLSF-GTDGNLVLAEA-DGTVVWQSNTANK--------------GVV----RFEL-L 119 (423)
Q Consensus 68 ~~vW~Anr~-------~pv~~~~~l~l-~~dGnLvl~d~-~~~~vWst~~~~~--------------~~~----~~~L-~ 119 (423)
+++|..... .|+-...+|.+ +.+|.|+-+|. .|+++|....... +++ .+.+ .
T Consensus 48 ~~~W~~~~g~~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t 127 (527)
T TIGR03075 48 QPAWTFSLGKLRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT 127 (527)
T ss_pred eEEEEEECCCCCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc
Confidence 467776443 24444556666 46788887785 6899998764211 111 1112 2
Q ss_pred eCCCeeEEec-CCeeEEee
Q 043457 120 SSGNMVLRDS-KGKFIWQS 137 (423)
Q Consensus 120 d~GNLVl~~~-~~~~~WqS 137 (423)
-+|.|+-+|. +|+++|+.
T Consensus 128 ~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 128 LDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCCEEEEEECCCCCEEeec
Confidence 4577777776 69999985
No 45
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=23.98 E-value=2.7e+02 Score=20.99 Aligned_cols=31 Identities=19% Similarity=0.391 Sum_probs=21.2
Q ss_pred eeEEEEecCCCccccCceEEEcCCCcEEEEec
Q 043457 67 FRWVWEANRGKPVRENAVLSFGTDGNLVLAEA 98 (423)
Q Consensus 67 ~~~vW~Anr~~pv~~~~~l~l~~dGnLvl~d~ 98 (423)
.++.|.-+. .++....++.+..+|.|+|.+-
T Consensus 16 p~v~W~k~~-~~l~~~~r~~~~~~g~L~I~~v 46 (73)
T cd05852 16 PKFSWSKGT-ELLVNNSRISIWDDGSLEILNI 46 (73)
T ss_pred CEEEEEeCC-EecccCCCEEEcCCCEEEECcC
Confidence 367898663 3555556777777888888653
No 46
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=23.79 E-value=85 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.618 Sum_probs=27.6
Q ss_pred eEEEEecCCCccccCceEEEcCCCcEEEEec
Q 043457 68 RWVWEANRGKPVRENAVLSFGTDGNLVLAEA 98 (423)
Q Consensus 68 ~~vW~Anr~~pv~~~~~l~l~~dGnLvl~d~ 98 (423)
+..|+-..+.++.+++.+.|++.|.|++.|=
T Consensus 14 ~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F 44 (271)
T PF07354_consen 14 TYLWTGPNGKPLSGNSYVNITETGKLMFKNF 44 (271)
T ss_pred ceEEECCCCcccCCCCeEEEccCceEEeecc
Confidence 5789998889999999999999999999763
No 47
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.68 E-value=1.5e+02 Score=18.24 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=10.4
Q ss_pred cCCCcEEEEec-CCcEEEe
Q 043457 88 GTDGNLVLAEA-DGTVVWQ 105 (423)
Q Consensus 88 ~~dGnLvl~d~-~~~~vWs 105 (423)
+.+|.|+-+|. +|+.+|.
T Consensus 13 ~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 13 STDGTLYALDAKTGEILWT 31 (33)
T ss_pred cCCCEEEEEEcccCcEEEE
Confidence 34566666555 5666665
No 48
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=22.39 E-value=62 Score=21.03 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=16.7
Q ss_pred cCCCCCcccCcCCCCCCCCCCCCc
Q 043457 303 DKCGKLGLCEDNQCIACPTEKGLI 326 (423)
Q Consensus 303 g~CG~~g~C~~~~~~~C~C~~g~~ 326 (423)
.+|...|.|... .-.|.|.+||.
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~ 28 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYT 28 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCc
Confidence 468888888754 33688988864
No 49
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.52 E-value=1.3e+02 Score=19.78 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=17.2
Q ss_pred cCCCcEEEEec-CCcEEEeccCC
Q 043457 88 GTDGNLVLAEA-DGTVVWQSNTA 109 (423)
Q Consensus 88 ~~dGnLvl~d~-~~~~vWst~~~ 109 (423)
+.+|.|+-+|. .|+.+|...+.
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESS
T ss_pred CCCCEEEEEECCCCCEEEeeeCC
Confidence 56888888885 68899987754
Done!