Your job contains 1 sequence.
>043458
KKKKAFYLLCDSAASSLSLSPPSFRFRAHKQKLVSFDSVLIKISDLRSLPQAFSCKFAGI
KSALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTGRLRIFRTALGDLLLHLS
LDSLVRLLLVSITMGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGS
SHGHSGVANRGGISVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNA
GPRITSSMGNMVGGGNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGV
LPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSR
PSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQ
LHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLH
LHGSDMFPSSHSSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQM
SAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNST
ENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDE
AQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNF
VVHYEMLEKRPALPQH
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043458
(736 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q52JK6 - symbol:VIP2 "Probable NOT transcriptio... 2269 2.7e-235 1
TAIR|locus:505006107 - symbol:NOT2a "Negative on TATA les... 1810 1.2e-186 1
TAIR|locus:2174259 - symbol:VIP2 "VIRE2 interacting prote... 1128 2.2e-114 1
DICTYBASE|DDB_G0284577 - symbol:DDB_G0284577 "putative CC... 438 8.7e-51 3
UNIPROTKB|Q5ZKI3 - symbol:CNOT2 "Uncharacterized protein"... 385 1.2e-46 2
UNIPROTKB|F1M3V0 - symbol:Cnot2 "Protein Cnot2" species:1... 385 1.5e-46 2
UNIPROTKB|F1MID5 - symbol:CNOT2 "Uncharacterized protein"... 385 5.7e-45 2
ZFIN|ZDB-GENE-070410-70 - symbol:zgc:162316 "zgc:162316" ... 384 5.8e-45 2
UNIPROTKB|F8VV52 - symbol:CNOT2 "CCR4-NOT transcription c... 385 1.2e-44 2
UNIPROTKB|F1LY92 - symbol:Cnot2 "Protein Cnot2" species:1... 385 1.2e-44 2
UNIPROTKB|E1BCE7 - symbol:CNOT2 "Uncharacterized protein"... 385 4.6e-44 2
UNIPROTKB|E2QSF5 - symbol:CNOT2 "Uncharacterized protein"... 385 4.6e-44 2
UNIPROTKB|Q9NZN8 - symbol:CNOT2 "CCR4-NOT transcription c... 385 4.6e-44 2
MGI|MGI:1919318 - symbol:Cnot2 "CCR4-NOT transcription co... 385 4.6e-44 2
UNIPROTKB|F1LUT7 - symbol:Cnot2 "Protein Cnot2" species:1... 385 1.0e-43 2
RGD|1311672 - symbol:Cnot2 "CCR4-NOT transcription comple... 352 8.3e-43 2
UNIPROTKB|F1SH40 - symbol:CNOT2 "Uncharacterized protein"... 353 7.7e-39 2
FB|FBgn0017550 - symbol:Rga "Regena" species:7227 "Drosop... 315 3.9e-30 2
WB|WBGene00003825 - symbol:ntl-2 species:6239 "Caenorhabd... 306 5.6e-30 2
UNIPROTKB|Q10923 - symbol:ntl-2 "Protein NTL-2, isoform a... 306 5.6e-30 2
POMBASE|SPCC4G3.15c - symbol:not2 "CCR4-Not complex subun... 325 1.6e-28 1
CGD|CAL0005191 - symbol:orf19.6075 species:5476 "Candida ... 323 2.6e-28 1
UNIPROTKB|H0YH84 - symbol:CNOT2 "CCR4-NOT transcription c... 209 5.6e-16 1
UNIPROTKB|H0YI11 - symbol:CNOT2 "CCR4-NOT transcription c... 209 5.6e-16 1
UNIPROTKB|H0YHT6 - symbol:CNOT2 "CCR4-NOT transcription c... 197 1.1e-14 1
ASPGD|ASPL0000008832 - symbol:AN5898 species:162425 "Emer... 136 1.8e-14 4
WB|WBGene00006499 - symbol:tag-153 species:6239 "Caenorha... 160 3.3e-13 2
SGD|S000002324 - symbol:CDC36 "Component of the CCR4-NOT ... 177 1.5e-12 1
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 182 4.8e-11 2
UNIPROTKB|H0YI80 - symbol:CNOT2 "CCR4-NOT transcription c... 159 1.3e-10 1
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 156 4.0e-09 2
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 167 8.9e-09 1
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 164 2.0e-08 1
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 163 2.4e-08 1
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 163 2.4e-08 1
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 164 2.4e-08 1
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 164 5.0e-08 2
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 164 1.0e-07 2
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 164 1.0e-07 2
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 156 1.2e-07 1
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 136 1.5e-07 3
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 164 2.6e-07 2
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 151 3.9e-07 1
FB|FBgn0028852 - symbol:CG15262 species:7227 "Drosophila ... 126 1.5e-06 2
UNIPROTKB|H0Y5X7 - symbol:CNOT3 "CCR4-NOT transcription c... 119 0.00033 1
>UNIPROTKB|Q52JK6 [details] [associations]
symbol:VIP2 "Probable NOT transcription complex subunit
VIP2" species:4100 "Nicotiana benthamiana" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0015074 "DNA integration" evidence=IMP]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 GO:GO:0015074 EMBL:DQ000202 Uniprot:Q52JK6
Length = 603
Score = 2269 (803.8 bits), Expect = 2.7e-235, P = 2.7e-235
Identities = 443/607 (72%), Positives = 487/607 (80%)
Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXVANRGGIS 194
GTL SRN+ INNVP+ GVQQ +LS GRF NNLP ALSQ+ + +RGG S
Sbjct: 3 GTLTSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPSALSQIPQGNSHGHSGMTSRGGTS 62
Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVXX 254
VVGNPG+SSNTNGVGGSIPGILPT AAIGNR+ G+GVSPILGNAGPR+T+S+GN+V
Sbjct: 63 VVGNPGYSSNTNGVGGSIPGILPTFAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIVGG 122
Query: 255 XXXXXXXXXXXXXXXXXXXXXRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
RLN+ ANSGSG+LNVQG NRLMSGVL Q SPQV+SMLGN
Sbjct: 123 GNIGRSISSGAGLSVPGLAS-RLNMNANSGSGNLNVQGPNRLMSGVLQQASPQVLSMLGN 181
Query: 315 SYPTAGGPLSQSHVN---NLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
SYP AGGPLSQ+HV N +SMG+LNDVNSND SPFDIN DFPQL+SRPSSAGGPQGQL
Sbjct: 182 SYP-AGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDIN-DFPQLSSRPSSAGGPQGQL 239
Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
GSLRKQGL SPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MD HQKEQLH+NT+SMMQ
Sbjct: 240 GSLRKQGL--SPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQ 297
Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPXXXXXXXXXXXXNNQDLLHLHGXXXXXXXX 491
QHFSMGRSAGFNLGGTY+S+RPQQQ QHAP NNQDLL LHG
Sbjct: 298 QHFSMGRSAGFNLGGTYSSNRPQQQLQHAPSVSSGGVSFSNINNQDLLSLHGSDVFQSSH 357
Query: 492 XXXXXXXXGPPGIGLRPLNSQNPVSGMGSYDQLVQ-YQ-HQNPSQFRLQQMSAVNQSFRN 549
GPPGIGLRPLNS VSG+GSYDQL+Q YQ HQ SQFRLQQMS + Q FR+
Sbjct: 358 SSYQQQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFRD 417
Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
Q +KS+Q+ PDPFG+LGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS ENL+KTFGS
Sbjct: 418 QSLKSMQS-QVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGS 476
Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
PWSDEPAKGDPEFTVPQCYYAKQPP L+Q YFSKF ++TLFYIFYSMPKDEAQLYAANEL
Sbjct: 477 PWSDEPAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANEL 536
Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
YNRGWFYH+EHRLWF+RV N+EPLVKTNAYERGSY CFDPNT+ETI KDNFV+H EMLEK
Sbjct: 537 YNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEK 596
Query: 730 RPALPQH 736
RP LPQH
Sbjct: 597 RPVLPQH 603
>TAIR|locus:505006107 [details] [associations]
symbol:NOT2a "Negative on TATA less2a" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR007282 Pfam:PF04153 EMBL:CP002684 GO:GO:0005634
GO:GO:0006355 EMBL:AC007583 eggNOG:COG5601 KO:K12605
HOGENOM:HOG000005739 IPI:IPI00852321 RefSeq:NP_001077478.1
UniGene:At.42289 PaxDb:A8MR45 PRIDE:A8MR45
EnsemblPlants:AT1G07705.2 GeneID:837284 KEGG:ath:AT1G07705
TAIR:At1g07705 InParanoid:A8MR45 OMA:RMNDADL PhylomeDB:A8MR45
ProtClustDB:CLSN2693279 Genevestigator:A8MR45 Uniprot:A8MR45
Length = 614
Score = 1810 (642.2 bits), Expect = 1.2e-186, P = 1.2e-186
Identities = 360/518 (69%), Positives = 403/518 (77%)
Query: 223 GNRNLGQGMGVSPILGNAGPRITSSMGNMVXXXXXXXXXXXXXXXXXXXXXXXRLNLTAN 282
G N G G+GVSPILGN G R+TSSMGNMV RLNL N
Sbjct: 113 GLTNRG-GLGVSPILGNVGSRMTSSMGNMVGGGTMGRTLSSGGGLSIPSLGS-RLNLAVN 170
Query: 283 SGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHV---NNLSSMGMLND 339
SGSG++ GQNR+M GVLPQGSPQV+SMLGNSYP+AGG LSQ+HV N+LSSMG+LND
Sbjct: 171 SGSGNI---GQNRMMGGVLPQGSPQVLSMLGNSYPSAGG-LSQNHVQAMNSLSSMGLLND 226
Query: 340 VNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFP 399
+NSND+SPFDINNDFPQLTSRPSSAG QGQLGS KQGLG+SPIVQQNQEFSIQNEDFP
Sbjct: 227 MNSNDTSPFDINNDFPQLTSRPSSAGS-QGQLGSRLKQGLGISPIVQQNQEFSIQNEDFP 285
Query: 400 ALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQH 459
ALPGYKG +A+Y MDLH KEQLHEN++ MMQSQ SMGRS GFNLGG YTSHRPQQQQQH
Sbjct: 286 ALPGYKGSSADYPMDLHHKEQLHENSVLMMQSQQLSMGRSGGFNLGGAYTSHRPQQQQQH 345
Query: 460 APXXXXXXXXXXXXNNQDLLHLHGXXXXXXXXXXXXXXXXGPPGIGLRPLNSQNPVSGMG 519
A + LHG G PGIGLR +NS N ++GMG
Sbjct: 346 AQAVSSSG-----------VSLHGSDIFSSSHPPYHSQTGGAPGIGLRSMNSANSITGMG 394
Query: 520 SYDQLVQ-YQHQ-NPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMS 577
QL+Q YQHQ N +Q+RLQQMSA +Q FR+ +KS+Q+ S PD FGLLGLLSVIKMS
Sbjct: 395 YDQQLIQQYQHQQNSAQYRLQQMSAASQPFRDVGLKSMQSTQSNPDRFGLLGLLSVIKMS 454
Query: 578 DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALH 637
DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWS+EP+K DPEF+VPQCYYAK PP LH
Sbjct: 455 DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSKVDPEFSVPQCYYAKNPPPLH 514
Query: 638 QGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTN 697
QG F+K VETLFY+FYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIR+ EPLVKTN
Sbjct: 515 QGLFAKLLVETLFYVFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRIG--EPLVKTN 572
Query: 698 AYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQ 735
AYERGSYHCFDPN+FE ++K+NFV++YEMLEKRP++ Q
Sbjct: 573 AYERGSYHCFDPNSFEIVQKENFVLYYEMLEKRPSISQ 610
Score = 223 (83.6 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 98/310 (31%), Positives = 138/310 (44%)
Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXVANRGGIS 194
G+L SRNS++N VP+ GVQQ GS+S+GRFAS+N+PVALSQ+ + NRGG+
Sbjct: 62 GSLGSRNSSLNGVPSAGVQQQNGSISNGRFASSNIPVALSQMSHGSSHGHSGLTNRGGLG 121
Query: 195 V---VGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVS-PILGNA-GPRITSSMG 249
V +GN G S T+ +G + G +G R L G G+S P LG+ + S G
Sbjct: 122 VSPILGNVG-SRMTSSMGNMVGG-----GTMG-RTLSSGGGLSIPSLGSRLNLAVNSGSG 174
Query: 250 NMVXXXXXXXXXXXXXXXXXXXXXXXRLNLTANSGSGSLN-VQGQNRLMS-GVLPQGSPQ 307
N+ N ++G S N VQ N L S G+L +
Sbjct: 175 NIGQNRMMGGVLPQGSPQVLSMLG----NSYPSAGGLSQNHVQAMNSLSSMGLLNDMNSN 230
Query: 308 VISM--LGNSYPT-AGGPLSQSHVNNLSS-----MGMLNDVNSNDSSPFDINN-DFPQLT 358
S + N +P P S L S +G+ V N F I N DFP L
Sbjct: 231 DTSPFDINNDFPQLTSRPSSAGSQGQLGSRLKQGLGISPIVQQNQE--FSIQNEDFPALP 288
Query: 359 S-RPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQ 417
+ SSA P L ++Q S ++ Q+Q+ S+ G+ G A Y Q
Sbjct: 289 GYKGSSADYPM-DLHH-KEQLHENSVLMMQSQQLSMGRSG-----GFNLGGA-YTSHRPQ 340
Query: 418 KEQLHENTMS 427
++Q H +S
Sbjct: 341 QQQQHAQAVS 350
>TAIR|locus:2174259 [details] [associations]
symbol:VIP2 "VIRE2 interacting protein 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0015074
eggNOG:COG5601 KO:K12605 EMBL:AB006705 EMBL:AK117230 EMBL:AF295433
IPI:IPI00536853 RefSeq:NP_568912.2 UniGene:At.24144 PaxDb:Q9FPW4
PRIDE:Q9FPW4 EnsemblPlants:AT5G59710.1 GeneID:836092
KEGG:ath:AT5G59710 TAIR:At5g59710 HOGENOM:HOG000005739
InParanoid:Q9FPW4 OMA:PEYLINM PhylomeDB:Q9FPW4
Genevestigator:Q9FPW4 Uniprot:Q9FPW4
Length = 614
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 229/325 (70%), Positives = 256/325 (78%)
Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXVANRGGIS 194
GTL SRNS++N++P+ GVQQP GS SSGRFASNNLPV LSQL + NRG ++
Sbjct: 61 GTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRG-LN 119
Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVXX 254
VVGNPGFSSN NGVGGSIPGIL TSA + NRN GMG+S +LGN+GPRIT+SMGNMV
Sbjct: 120 VVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGG 179
Query: 255 XXXXXXXXXXXXXXXXXXXXXRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
RLNL ANSGSG LNVQGQNR+M GVLPQGS QV+SMLGN
Sbjct: 180 GNLGRNISSGGLSIPGLSS--RLNLAANSGSG-LNVQGQNRMMGGVLPQGS-QVMSMLGN 235
Query: 315 SYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSL 374
SY T GGPLSQ+HV ++++M ML+D + NDSS FDINNDFPQLTSRP SAGG QG LGSL
Sbjct: 236 SYHTGGGPLSQNHVQSVNNM-MLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSL 293
Query: 375 RKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHF 434
RKQGLGV P+VQQNQEFSIQNEDFPALPGYKGGN+EY MDLHQKEQLH+N MSMM SQ+F
Sbjct: 294 RKQGLGV-PLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNF 352
Query: 435 SMGRSAGFNLGGTYTSHRPQQQQQH 459
SMGRS GFNLG TY+SHRPQQQ QH
Sbjct: 353 SMGRSGGFNLGATYSSHRPQQQPQH 377
Score = 805 (288.4 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 186/388 (47%), Positives = 235/388 (60%)
Query: 363 SAGGP--QGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPAL---PGYKGGNAEYGMDLHQ 417
+ GGP Q + S+ L P + F I N DFP L PG GG + L +
Sbjct: 239 TGGGPLSQNHVQSVNNMMLSDHP--NDSSLFDINN-DFPQLTSRPGSAGGTQGHLGSL-R 294
Query: 418 KEQLHENTMSMMQSQHFSMGRS-----AGFNLGGT-YTSHRPQQQQQHAPXXXXXXXXXX 471
K+ L + Q+Q FS+ G+ G + Y Q++Q H
Sbjct: 295 KQGL--GVPLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNF 352
Query: 472 XXNNQDLLHLHGXXXXXXXXXX--XXXXXXGPPGIGLRPLNSQNPVSGMGSYDQLVQ-YQ 528
+L G G+GLRPL+S N VS +G YDQL+Q YQ
Sbjct: 353 SMGRSGGFNLGATYSSHRPQQQPQHTSSTGGLQGLGLRPLSSPNAVSSIG-YDQLIQQYQ 411
Query: 529 -HQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALG 587
HQN SQF +QQMS++NQ FR+ +MKS Q S DPF LLGLL V+ S+P+LTSLALG
Sbjct: 412 QHQNQSQFPVQQMSSINQ-FRDSEMKSTQ---SEADPFCLLGLLDVLNRSNPELTSLALG 467
Query: 588 IDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVE 647
IDLTTLGL+LNST NL+KTF SPW++EPAK + EFTVP CYYA +PP L + F +F+ E
Sbjct: 468 IDLTTLGLDLNSTGNLYKTFASPWTNEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYE 527
Query: 648 TLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCF 707
LFY FYSMPKDEAQLYAA+ELY RGWFYHKE R+WF RV EPLV+ YERG+Y
Sbjct: 528 LLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVG--EPLVRAATYERGTYEYL 585
Query: 708 DPNTFETIRKDNFVVHYEMLEKRPALPQ 735
DPN+F+T+RK++FV+ YE++EKRP+L Q
Sbjct: 586 DPNSFKTVRKEHFVIKYELMEKRPSLLQ 613
Score = 38 (18.4 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 133 TMGTLASRNSTINNVPTGGVQQPTGSLSSGRFASNN 168
+MG + + N+ +GG+ P G S A+N+
Sbjct: 172 SMGNMVGGGNLGRNISSGGLSIP-GLSSRLNLAANS 206
>DICTYBASE|DDB_G0284577 [details] [associations]
symbol:DDB_G0284577 "putative CCR4-NOT complex
subunit 2" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
InterPro:IPR007282 Pfam:PF04153 dictyBase:DDB_G0284577
GO:GO:0005634 GO:GO:0006355 GO:GO:0016567 EMBL:AAFI02000066
GO:GO:0030015 eggNOG:COG5601 KO:K12605 RefSeq:XP_638512.1
EnsemblProtists:DDB0237628 GeneID:8624662 KEGG:ddi:DDB_G0284577
OMA:HEEYQRK ProtClustDB:CLSZ2846720 Uniprot:Q54PG2
Length = 579
Score = 438 (159.2 bits), Expect = 8.7e-51, Sum P(3) = 8.7e-51
Identities = 89/192 (46%), Positives = 117/192 (60%)
Query: 544 NQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENL 603
+Q K +GLLGLLSVIK +D D+++L++GIDLT LGLNLNS +
Sbjct: 346 DQGHEEYQRKDFNIVDKDNGKYGLLGLLSVIKNTDLDISTLSIGIDLTALGLNLNSQGEI 405
Query: 604 HKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSK--FTVETLFYIFYSMPKDEA 661
+FGSPW D PE+ +P CY P L F FT ETLFYIFYSMPKD
Sbjct: 406 SNSFGSPWVDYSISRKPEYYIPLCY---STPNLESPTFKMNLFTYETLFYIFYSMPKDVL 462
Query: 662 QLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFV 721
QL+AA ELY+R W YHKE ++W RV EP + T+ +E GS+ FD +ET+R+DNF
Sbjct: 463 QLHAAIELYDRDWRYHKEGKIWLTRVQGTEPNI-TSTFEVGSFFFFDVTIWETVRRDNFY 521
Query: 722 VHYEMLEKRPAL 733
+ +++LE + L
Sbjct: 522 IPHDLLETKEVL 533
Score = 77 (32.2 bits), Expect = 8.7e-51, Sum P(3) = 8.7e-51
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 329 NNLSSMGMLNDVNSNDSSPFDINNDFPQLTS 359
NN ++ + N+ N+N+++ FD+NNDFP L+S
Sbjct: 254 NNNNNNNINNNNNNNNNNNFDLNNDFPVLSS 284
Score = 65 (27.9 bits), Expect = 4.1e-46, Sum P(2) = 4.1e-46
Identities = 34/159 (21%), Positives = 63/159 (39%)
Query: 282 NSGSGSLNVQGQNRLMSGVLPQGSPQVISM------LGNSYPTAGGPLSQSHVNNLSSMG 335
N + N +GQN+ M G Q + S +GN+ G P + N+++M
Sbjct: 58 NQQNQQQNFRGQNQNMMGGQNQNNNNNNSSNINNNRVGNNSNINGMPTGGNMATNINNMN 117
Query: 336 MLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQN 395
M+N+ N+ +++ NN P ++S S P Q +Q L S S
Sbjct: 118 MMNNNNNTNNN----NNGRP-ISSSNSQQPPPPPQQQQQPQQPLSRSTPNTPTTSSSPNL 172
Query: 396 EDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHF 434
++ P + G + Q+ ++ N + Q++
Sbjct: 173 QNIPRMNGNVNNAQQNTQQQQQRGNINSNGPIIQGMQNY 211
Score = 45 (20.9 bits), Expect = 8.7e-51, Sum P(3) = 8.7e-51
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 141 NSTINNVPTGG 151
NS IN +PTGG
Sbjct: 97 NSNINGMPTGG 107
Score = 43 (20.2 bits), Expect = 8.4e-44, Sum P(2) = 8.4e-44
Identities = 27/113 (23%), Positives = 44/113 (38%)
Query: 350 INNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNA 409
IN PQ ++ + Q Q + R Q + + QNQ + N G N+
Sbjct: 43 INRQGPQHLNQQQNQN-QQNQQQNFRGQNQNM--MGGQNQNNN-NNNSSNINNNRVGNNS 98
Query: 410 EY-GMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRP---QQQQQ 458
GM + N M+MM + + + + G + + + P QQQQQ
Sbjct: 99 NINGMPTGGNMATNINNMNMMNNNNNTNNNNNGRPISSSNSQQPPPPPQQQQQ 151
Score = 40 (19.1 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 502 PGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ----FRLQQ---MSAVNQSFRNQDMKS 554
P + RP NP+ L Q Q+QN FR Q M NQ+ N + +
Sbjct: 30 PNMNYRP-EMINPMINRQGPQHLNQQQNQNQQNQQQNFRGQNQNMMGGQNQNNNNNNSSN 88
Query: 555 I 555
I
Sbjct: 89 I 89
Score = 39 (18.8 bits), Expect = 8.0e-47, Sum P(3) = 8.0e-47
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 289 NVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLN-----DVNSN 343
N+ ++ G+ Q P + N+ + ++ NN+SS L D N+N
Sbjct: 197 NINSNGPIIQGM--QNYPYNSNNNNNNNINNNNNNNNNNNNNISSTSPLQKQQGKDNNNN 254
Query: 344 DSSPFDINND 353
+++ +INN+
Sbjct: 255 NNNNNNINNN 264
Score = 38 (18.4 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 324 SQSHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
+Q++ N ++ N+ N+N+S+ + NN F
Sbjct: 302 NQNNNTNNNNNNNSNNNNNNNSNNNNSNNTF 332
Score = 38 (18.4 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 14/76 (18%), Positives = 32/76 (42%)
Query: 278 NLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGML 337
N N+ + ++N N + V+S N + + ++ N ++
Sbjct: 251 NNNNNNNNNNINNNNNNNNNNNFDLNNDFPVLSSTSNKNAQSKNNSNNNNNNQNNNTNNN 310
Query: 338 NDVNSNDSSPFDINND 353
N+ NSN+++ + NN+
Sbjct: 311 NNNNSNNNNNNNSNNN 326
>UNIPROTKB|Q5ZKI3 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV GeneTree:ENSGT00390000001285 EMBL:AADN02009856
EMBL:AJ720101 IPI:IPI00592451 RefSeq:NP_001012826.1
UniGene:Gga.50456 UniGene:Gga.9400 STRING:Q5ZKI3
Ensembl:ENSGALT00000016314 GeneID:417851 KEGG:gga:417851
InParanoid:Q5ZKI3 NextBio:20821090 Uniprot:Q5ZKI3
Length = 520
Score = 385 (140.6 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 333 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 392
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 393 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 452
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 453 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 508
Score = 131 (51.2 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 134 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 190
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 191 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPASEQ 249
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 250 SQDFSIHNEDFPALPGSSYK 269
Score = 43 (20.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 27 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 80
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 81 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 140
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 141 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 191
>UNIPROTKB|F1M3V0 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00949675 Ensembl:ENSRNOT00000064732
ArrayExpress:F1M3V0 Uniprot:F1M3V0
Length = 493
Score = 385 (140.6 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 306 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 365
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 366 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 425
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 426 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 481
Score = 130 (50.8 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 107 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 163
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 164 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 222
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 223 SQDFSIHNEDFPALPGSSYK 242
Score = 43 (20.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 35/161 (21%), Positives = 59/161 (36%)
Query: 308 VISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPS-- 362
V ML + P+ G LSQ S S++G+ SN++ P +N Q T PS
Sbjct: 8 VYQMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSLSQGTQLPSHV 63
Query: 363 --SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQ--- 417
+ G P L + G+ P+ +N Q +P + G+
Sbjct: 64 TPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSS 123
Query: 418 -------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
K+Q ++ F M R+ F + + +S+
Sbjct: 124 PSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 164
>UNIPROTKB|F1MID5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:DAAA02013212 EMBL:DAAA02013213
EMBL:DAAA02013214 EMBL:DAAA02013215 IPI:IPI00905002
UniGene:Bt.30639 Ensembl:ENSBTAT00000057053 ArrayExpress:F1MID5
Uniprot:F1MID5
Length = 403
Score = 385 (140.6 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 216 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 275
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 276 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 335
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 336 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 391
Score = 115 (45.5 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 41/116 (35%), Positives = 57/116 (49%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQL 357
S + P S + ML + P+ G LSQ S G N S + + D++ DFP L
Sbjct: 47 SSMFPHRSEK--DMLAS--PSTSGQLSQF---GASLYGQQN--GSENVTGLDLS-DFPAL 96
Query: 358 T--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQNQEFSIQNEDFPALPG--YK 405
+R +G P + L + G+ P +Q+Q+FSI NEDFPALPG YK
Sbjct: 97 ADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYK 152
Score = 40 (19.1 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 387 QNQEFSIQNE-DFPALPGYKGGNAEYGMDLHQKEQLHENTMSM 428
Q+ F ++E D A P G +++G L+ ++ EN +
Sbjct: 46 QSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQNGSENVTGL 88
>ZFIN|ZDB-GENE-070410-70 [details] [associations]
symbol:zgc:162316 "zgc:162316" species:7955 "Danio
rerio" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 ZFIN:ZDB-GENE-070410-70
GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
GeneTree:ENSGT00390000001285 EMBL:CR376836 EMBL:CR382363
EMBL:BC134959 IPI:IPI00799285 RefSeq:NP_001082993.1
UniGene:Dr.78739 STRING:A4QN63 Ensembl:ENSDART00000088383
GeneID:100037372 KEGG:dre:100037372 InParanoid:A4QN63
NextBio:20788534 Uniprot:A4QN63
Length = 520
Score = 384 (140.2 bits), Expect = 5.8e-45, Sum P(2) = 5.8e-45
Identities = 80/177 (45%), Positives = 109/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 333 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQD 392
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 393 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYH 452
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + + K+ F + Y+ LE+RP +P
Sbjct: 453 KEERVWITRAPGMEPTLKTNTYERGTYYFFDCHNWRKVAKE-FHLEYDKLEERPHVP 508
Score = 116 (45.9 bits), Expect = 5.8e-45, Sum P(2) = 5.8e-45
Identities = 45/139 (32%), Positives = 63/139 (45%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMG 335
R N +SG GS N + + +P+ P NS G SQ N S
Sbjct: 135 RTNSMGSSGLGSPNRSSPSIIC---MPKQQPARQPFTINSMSGFGMGRSQGFGMNSLSNN 191
Query: 336 MLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGP---QGQL-GSLRKQGLGVSPIVQQN 388
+ N + +++ + D++ +FP L SR G P L G G+ P +Q+
Sbjct: 192 IFNGTDGSENVTGIDLS-EFPALADRSRREGNGNPTPLHNPLAGRAPYVGMVTKPSNEQS 250
Query: 389 QEFSIQNEDFPALPG--YK 405
Q+FSI NEDFPALPG YK
Sbjct: 251 QDFSIHNEDFPALPGPNYK 269
Score = 43 (20.2 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 33/118 (27%), Positives = 45/118 (38%)
Query: 343 NDSSPFDINNDFPQLTSRPSSAGGPQGQLG-SLR--KQGLGVS--PIVQQNQEFSIQNED 397
N +S F ++ L S S+ G QLG SL + LG S + N + +
Sbjct: 24 NQASMFQHRSEKDMLPSPSPSSSGQLSQLGASLYGPQSALGFSIRGMSNNNPQLNRSLTQ 83
Query: 398 FPALPGYKGGNAEYG-MDLH------QKEQLHENTMSMMQSQ-HFSMGRSAGFNLGGT 447
LP + M LH + L NT +MM SQ MG S N G+
Sbjct: 84 GTQLPSHSTPTTGVPTMSLHTTPPSPNRGILPMNTRNMMSSQVGQGMGMSGRTNSMGS 141
Score = 43 (20.2 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 37/152 (24%), Positives = 56/152 (36%)
Query: 311 MLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPS----S 363
ML + P++ G LSQ S S++G SN++ P +N Q T PS +
Sbjct: 37 MLPSPSPSSSGQLSQLGASLYGPQSALGFSIRGMSNNN-P-QLNRSLTQGTQLPSHSTPT 94
Query: 364 AGGPQGQLGSLRKQ-GLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQ----- 417
G P L + G+ P+ +N S Q + G G+
Sbjct: 95 TGVPTMSLHTTPPSPNRGILPMNTRNM-MSSQVGQGMGMSGRTNSMGSSGLGSPNRSSPS 153
Query: 418 -----KEQLHENTMSMMQSQHFSMGRSAGFNL 444
K+Q ++ F MGRS GF +
Sbjct: 154 IICMPKQQPARQPFTINSMSGFGMGRSQGFGM 185
>UNIPROTKB|F8VV52 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 IPI:IPI00017733 HGNC:HGNC:7878 ChiTaRS:CNOT2
EMBL:AC025569 EMBL:AC092881 PRIDE:F8VV52 Ensembl:ENST00000548159
ArrayExpress:F8VV52 Bgee:F8VV52 Uniprot:F8VV52
Length = 531
Score = 385 (140.6 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 344 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 403
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 404 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 463
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 464 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 519
Score = 130 (50.8 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 145 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 201
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 202 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 260
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 261 SQDFSIHNEDFPALPGSSYK 280
Score = 43 (20.2 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 38 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 91
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 92 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 151
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 152 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 202
>UNIPROTKB|F1LY92 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00366212 Ensembl:ENSRNOT00000006779
ArrayExpress:F1LY92 Uniprot:F1LY92
Length = 531
Score = 385 (140.6 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 344 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 403
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 404 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 463
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 464 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 519
Score = 130 (50.8 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 145 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 201
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 202 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 260
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 261 SQDFSIHNEDFPALPGSSYK 280
Score = 43 (20.2 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 38 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 91
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 92 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 151
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 152 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 202
>UNIPROTKB|E1BCE7 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:DAAA02013212
EMBL:DAAA02013213 EMBL:DAAA02013214 EMBL:DAAA02013215
IPI:IPI00692269 Ensembl:ENSBTAT00000004880 ArrayExpress:E1BCE7
Uniprot:E1BCE7
Length = 540
Score = 385 (140.6 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 472
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 473 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
Score = 130 (50.8 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 154 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 210
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 211 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 269
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 270 SQDFSIHNEDFPALPGSSYK 289
Score = 43 (20.2 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 47 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 100
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 101 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 160
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 161 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 211
>UNIPROTKB|E2QSF5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
CTD:4848 KO:K12605 OMA:TQDFSIH GeneTree:ENSGT00390000001285
EMBL:AAEX03007054 EMBL:AAEX03007055 RefSeq:XP_850576.1
Ensembl:ENSCAFT00000000701 GeneID:474446 KEGG:cfa:474446
NextBio:20850458 Uniprot:E2QSF5
Length = 540
Score = 385 (140.6 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 472
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 473 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
Score = 130 (50.8 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 154 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 210
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 211 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 269
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 270 SQDFSIHNEDFPALPGSSYK 289
Score = 43 (20.2 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 47 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 100
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 101 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 160
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 161 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 211
>UNIPROTKB|Q9NZN8 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=TAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0010606 "positive regulation
of cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001226 "RNA polymerase
II transcription corepressor binding" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:2000036 "regulation of stem cell
maintenance" evidence=IMP] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR007282
Pfam:PF04153 GO:GO:0005829 GO:GO:0005634 GO:GO:0000289
GO:GO:0001104 EMBL:AF180473 EMBL:AF113226 EMBL:AF161480
EMBL:AK000662 EMBL:AL137674 EMBL:BX641116 EMBL:BC002597
EMBL:BC011826 EMBL:AF044215 IPI:IPI00005011 IPI:IPI00017733
IPI:IPI00410621 IPI:IPI00410622 IPI:IPI00410623 PIR:T46494
RefSeq:NP_001186231.1 RefSeq:NP_001186232.1 RefSeq:NP_055330.1
UniGene:Hs.133350 UniGene:Hs.730666 ProteinModelPortal:Q9NZN8
DIP:DIP-42656N IntAct:Q9NZN8 MINT:MINT-1438957 STRING:Q9NZN8
PhosphoSite:Q9NZN8 DMDM:46396017 PaxDb:Q9NZN8 PRIDE:Q9NZN8
DNASU:4848 Ensembl:ENST00000229195 Ensembl:ENST00000418359
Ensembl:ENST00000551043 Ensembl:ENST00000551483 GeneID:4848
KEGG:hsa:4848 UCSC:uc001svv.3 UCSC:uc001svw.1 CTD:4848
GeneCards:GC12P070636 HGNC:HGNC:7878 MIM:604909 neXtProt:NX_Q9NZN8
PharmGKB:PA26673 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 InParanoid:Q9NZN8 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV PhylomeDB:Q9NZN8 ChiTaRS:CNOT2 GenomeRNAi:4848
NextBio:18670 ArrayExpress:Q9NZN8 Bgee:Q9NZN8 CleanEx:HS_CNOT2
Genevestigator:Q9NZN8 GermOnline:ENSG00000111596 Uniprot:Q9NZN8
Length = 540
Score = 385 (140.6 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 472
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 473 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
Score = 130 (50.8 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 154 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 210
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 211 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 269
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 270 SQDFSIHNEDFPALPGSSYK 289
Score = 43 (20.2 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 47 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 100
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 101 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 160
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 161 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 211
>MGI|MGI:1919318 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000036 "regulation of stem
cell maintenance" evidence=ISO] InterPro:IPR007282 Pfam:PF04153
MGI:MGI:1919318 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 CTD:4848 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
ChiTaRS:CNOT2 EMBL:AK011231 EMBL:AK078121 EMBL:AK149767
EMBL:BC043133 EMBL:BC063105 EMBL:BC065171 IPI:IPI00132821
IPI:IPI00410747 IPI:IPI00410748 RefSeq:NP_001032935.2
RefSeq:NP_001032936.2 RefSeq:NP_001032937.1 RefSeq:NP_082358.2
UniGene:Mm.351553 ProteinModelPortal:Q8C5L3 STRING:Q8C5L3
PhosphoSite:Q8C5L3 PaxDb:Q8C5L3 PRIDE:Q8C5L3
Ensembl:ENSMUST00000105265 Ensembl:ENSMUST00000105267
Ensembl:ENSMUST00000169921 GeneID:72068 KEGG:mmu:72068
UCSC:uc007hca.2 UCSC:uc007hcb.2 UCSC:uc007hcd.2
GeneTree:ENSGT00390000001285 InParanoid:Q8C5L3 NextBio:335352
Bgee:Q8C5L3 CleanEx:MM_CNOT2 Genevestigator:Q8C5L3
GermOnline:ENSMUSG00000020166 Uniprot:Q8C5L3
Length = 540
Score = 385 (140.6 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 472
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 473 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
Score = 130 (50.8 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 154 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 210
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 211 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 269
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 270 SQDFSIHNEDFPALPGSSYK 289
Score = 43 (20.2 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 47 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 100
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 101 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 160
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 161 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 211
>UNIPROTKB|F1LUT7 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00734620 Ensembl:ENSRNOT00000058355
ArrayExpress:F1LUT7 Uniprot:F1LUT7
Length = 549
Score = 385 (140.6 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 81/177 (45%), Positives = 108/177 (61%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 362 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 421
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 422 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 481
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
KE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 482 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 537
Score = 130 (50.8 bits), Expect = 1.0e-43, Sum P(2) = 1.0e-43
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 163 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 219
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 220 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 278
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 279 SQDFSIHNEDFPALPGSSYK 298
Score = 43 (20.2 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 56 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 109
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 110 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 169
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 170 SGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 220
>RGD|1311672 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010606 "positive regulation of
cytoplasmic mRNA processing body assembly" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative
regulation of intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:2000036 "regulation of stem cell maintenance"
evidence=ISO] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 RGD:1311672
GO:GO:0005634 GO:GO:0006355 CTD:4848 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:BC087653 IPI:IPI00952054
RefSeq:NP_001011988.1 UniGene:Rn.99836 STRING:Q5PPJ8
Ensembl:ENSRNOT00000066396 GeneID:299805 KEGG:rno:299805
UCSC:RGD:1311672 InParanoid:Q5PPJ8 NextBio:645798
Genevestigator:Q5PPJ8 Uniprot:Q5PPJ8
Length = 429
Score = 352 (129.0 bits), Expect = 8.3e-43, Sum P(2) = 8.3e-43
Identities = 73/162 (45%), Positives = 98/162 (60%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 268 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 327
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYH 677
+F VP Y L ++ + LFY++Y D QL AA EL+NR W YH
Sbjct: 328 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYH 387
Query: 678 KEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDN 719
KE R+W R P +EP +KTN YERG+Y+ FD + + K++
Sbjct: 388 KEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEH 429
Score = 130 (50.8 bits), Expect = 8.3e-43, Sum P(2) = 8.3e-43
Identities = 44/140 (31%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS N + + +P+ P NS G +Q+ +NN S
Sbjct: 69 RTNSMSSSGLGSPNRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 125
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 126 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 184
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 185 SQDFSIHNEDFPALPGSSYK 204
>UNIPROTKB|F1SH40 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:CU467026
Ensembl:ENSSSCT00000000541 Uniprot:F1SH40
Length = 541
Score = 353 (129.3 bits), Expect = 7.7e-39, Sum P(2) = 7.7e-39
Identities = 79/181 (43%), Positives = 107/181 (59%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDP 620
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS EN +PWS + G
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENSFPASYNPWSXDECCGQA 412
Query: 621 E-FTVPQCYYAK------QPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRG 673
+ F +P Y Q A+ G + + + LFY++Y D QL AA EL+NR
Sbjct: 413 KPFLMPIEYVTTVIHIVFQLAAIKLGRYGE---DLLFYLYYMNGGDVLQLLAAVELFNRD 469
Query: 674 WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL 733
W YHKE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP L
Sbjct: 470 WRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHL 528
Query: 734 P 734
P
Sbjct: 529 P 529
Score = 125 (49.1 bits), Expect = 7.7e-39, Sum P(2) = 7.7e-39
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNNLSSM 334
R N ++SG GS + + + +P+ P NS G +Q+ +NN S
Sbjct: 154 RTNSMSSSGLGSPSRSSPSIIC---MPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSS 210
Query: 335 GMLNDVNSNDS-SPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSPIVQQ 387
+ N + +++ + D++ DFP L +R +G P + L + G+ P +Q
Sbjct: 211 NIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQ 269
Query: 388 NQEFSIQNEDFPALPG--YK 405
+Q+FSI NEDFPALPG YK
Sbjct: 270 SQDFSIHNEDFPALPGSSYK 289
Score = 43 (20.2 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
Identities = 37/171 (21%), Positives = 63/171 (36%)
Query: 298 SGVLPQGSPQVISMLGNSYPTAGGPLSQ---SHVNNLSSMGMLNDVNSNDSSPFDINNDF 354
S + P S + ML + P+ G LSQ S S++G+ SN++ P +N
Sbjct: 47 SSMFPHRSEK--DMLAS--PSTSGQLSQFGASLYGQQSALGLPMRGMSNNT-P-QLNRSL 100
Query: 355 PQLTSRPS----SAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAE 410
Q T PS + G P L + G+ P+ +N Q +P +
Sbjct: 101 SQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSS 160
Query: 411 YGMDLHQ----------KEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSH 451
G+ K+Q ++ F M R+ F + + +S+
Sbjct: 161 SGLGSPSRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSN 211
>FB|FBgn0017550 [details] [associations]
symbol:Rga "Regena" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0046331 "lateral inhibition" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR007282 Pfam:PF04153
EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
GO:GO:0006355 GO:GO:0006351 GO:GO:0046331 EMBL:U75467 GO:GO:0030014
eggNOG:COG5601 KO:K12605 GeneTree:ENSGT00390000001285 EMBL:AY094772
EMBL:BT025208 RefSeq:NP_524239.2 RefSeq:NP_730966.1 UniGene:Dm.2486
STRING:Q94547 PaxDb:Q94547 PRIDE:Q94547 EnsemblMetazoa:FBtr0078741
GeneID:40683 KEGG:dme:Dmel_CG2161 UCSC:CG2161-RA CTD:40683
FlyBase:FBgn0017550 InParanoid:Q94547 OMA:KVTNIPA OrthoDB:EOG459ZWX
PhylomeDB:Q94547 ChiTaRS:Rga GenomeRNAi:40683 NextBio:820039
Bgee:Q94547 GermOnline:CG2161 Uniprot:Q94547
Length = 585
Score = 315 (115.9 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 77/221 (34%), Positives = 119/221 (53%)
Query: 516 SGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIK 575
SG GS +H N + + + + Q+ + + +I A + FG++GLL+ I+
Sbjct: 356 SGSGSSGSGAGGEHLNDNSSNDKLVKSGVQTSPDGKVTNIPAT-MVNNQFGMVGLLTFIR 414
Query: 576 MS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-DPEFTVPQCYYAKQ 632
+ DP+L +L+LG DLT LGLNLNS E+LH TF P+ +P + D EF VP Y
Sbjct: 415 AAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAGPFVAQPCRAQDVEFNVPPEYLINF 474
Query: 633 P--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNV 690
L K + LF++FY+ D QL AA EL++R W YH E ++W R+P +
Sbjct: 475 AIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGI 534
Query: 691 EPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRP 731
+ K ERG+++ FD +++ + K F + E L+K P
Sbjct: 535 DQYEKNGTKERGTFYYFDAQSWKRLSKV-FQIDPEKLDKCP 574
Score = 90 (36.7 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 39/139 (28%), Positives = 60/139 (43%)
Query: 282 NSGSGSLNVQGQNRLMSGVLPQG-SPQVISMLGN-------SYPTAGG---PLSQSHV-- 328
+SG+ + N+ GQ + + QG +S +GN Y T GG PL+ HV
Sbjct: 88 SSGNRNANLFGQRQFVERRAMQGLGSGPMSNMGNFMQTGRGGYGTGGGGGGPLNNFHVFG 147
Query: 329 ----NNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPI 384
++ S+ +L+ + ND S P G + G+ P
Sbjct: 148 GGGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPT 207
Query: 385 VQQNQEFSIQNEDFPALPG 403
+Q+ EF++ NEDFPALPG
Sbjct: 208 SEQS-EFTMSNEDFPALPG 225
Score = 63 (27.2 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 48/194 (24%), Positives = 73/194 (37%)
Query: 150 GGVQQPTGSLSSGRFASNNLPVAL--SQLXXXXXXXXXXVANRGGISVVGNPGFSSNTNG 207
G V+QPT S ++ + P AL +Q VA GG G ++ +G
Sbjct: 201 GMVKQPTSEQSEFTMSNEDFP-ALPGTQNSDGTTNAVGSVAGTGGS---GGASTENHLDG 256
Query: 208 VGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVXXXXXXXXXXXXXXX 267
+ I+ + +A G+ G +GV + GN + S +G +
Sbjct: 257 TEKPMNSIVVSGSASGSS--GSNVGV--VGGNGLGAVGSGIGGLAVGGGGGAGSSGGGGV 312
Query: 268 XXXXXXX----XRLNLT-ANSGSGSLN-VQGQNRLMS--GVLPQGSPQVISMLGNSYPTA 319
+ L +NSG G +N V N +M G L GS G+S A
Sbjct: 313 GGNAASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGVGGGLGSGS-------GSSGSGA 365
Query: 320 GGPLSQSHVNNLSS 333
GG H+N+ SS
Sbjct: 366 GG----EHLNDNSS 375
Score = 59 (25.8 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 322 PLSQSHVNNLSSMGMLNDVNSNDSSPFDINN-DFPQLTSRPSSAGGPQGQLGSLRKQG 378
P S+ + N +S GM+ S + S F ++N DFP L +S G +GS+ G
Sbjct: 188 PGSKPYGNFFTSFGMVKQPTS-EQSEFTMSNEDFPALPGTQNS-DGTTNAVGSVAGTG 243
Score = 56 (24.8 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 35/127 (27%), Positives = 49/127 (38%)
Query: 135 GTLASRNSTINNVPTGGVQQPTGSL-----SSGRFASNNLPVALSQLXXXXXXXXX-XVA 188
GT S ++ N G ++P S+ +SG SN V + L V
Sbjct: 241 GTGGSGGASTEN-HLDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVG 299
Query: 189 NRGGISVVGNPGFSSNT-NGV-GGSIPGILPTSAAIGN----RNLGQGMGVSPILGNAGP 242
GG G G N +GV GGS G++ +++ IG N MGV LG+
Sbjct: 300 GGGGAGSSGGGGVGGNAASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGVGGGLGSGSG 359
Query: 243 RITSSMG 249
S G
Sbjct: 360 SSGSGAG 366
Score = 43 (20.2 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 284 GSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMG--MLNDVN 341
G + + G N + GV P +M+G GG L ++ S G LND +
Sbjct: 322 GGSHVGLVGSNSGIGGV--NSVPNSNAMMG-----VGGGLGSGSGSSGSGAGGEHLNDNS 374
Query: 342 SND 344
SND
Sbjct: 375 SND 377
Score = 40 (19.1 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 502 PGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQFRL 537
P G+ + N G +Y Q Q Q Q Q +L
Sbjct: 37 PTSGMFQTDFANSYPGTANYGQAPQQQQQQQQQPQL 72
>WB|WBGene00003825 [details] [associations]
symbol:ntl-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006355 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
GO:GO:0040035 HOGENOM:HOG000246523 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:FO080154 GeneID:173773
KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1 CTD:173773 NextBio:881031
PIR:T15310 RefSeq:NP_494772.1 ProteinModelPortal:Q10923
DIP:DIP-25406N IntAct:Q10923 MINT:MINT-1053402 STRING:Q10923
PRIDE:Q10923 EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 306 (112.8 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
Identities = 71/182 (39%), Positives = 102/182 (56%)
Query: 563 DPFGLLGLLSVIKMSD-PDLTSLALGIDLTTLGLNLNSTEN-LHKTFGSPWSDEPAKG-D 619
D FG+ GL++ ++ D P + SLALG DLTTLGLNLN +E L+ FG PW+D P + +
Sbjct: 182 DQFGMAGLVTYLRTVDNPSIVSLALGYDLTTLGLNLNLSERKLYMNFGGPWADSPIRAHE 241
Query: 620 PEFTVPQCYYA------KQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRG 673
+ VP+ Y K PP +K + + LFY+FY+ P + Q+ AA ELY R
Sbjct: 242 LDVKVPEEYMTHNHIRDKLPPLR----LNKVSEDVLFYLFYNCPNEIYQVAAACELYARE 297
Query: 674 WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL 733
W +HK ++W R +T YE+G Y+ FD + I K+ + Y+ LE RP +
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPKE-LKLEYKELEDRPKM 356
Query: 734 PQ 735
PQ
Sbjct: 357 PQ 358
Score = 84 (34.6 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 388 NQEFSIQNEDFPALPGYKGGNAEYGM 413
N EF IQNEDFPALPG G + M
Sbjct: 95 NPEFQIQNEDFPALPGVGSGQTQRSM 120
Score = 39 (18.8 bits), Expect = 2.9e-25, Sum P(2) = 2.9e-25
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 HENTMSMMQSQHFSMGRSAGFNLGG 446
H N + +SQ S+G +LGG
Sbjct: 26 HSNATIIDESQFPSLGAKGTSSLGG 50
>UNIPROTKB|Q10923 [details] [associations]
symbol:ntl-2 "Protein NTL-2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006355
GO:GO:0040011 GO:GO:0040018 GO:GO:0019915 GO:GO:0040035
HOGENOM:HOG000246523 KO:K12605 GeneTree:ENSGT00390000001285
EMBL:FO080154 GeneID:173773 KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1
CTD:173773 NextBio:881031 PIR:T15310 RefSeq:NP_494772.1
ProteinModelPortal:Q10923 DIP:DIP-25406N IntAct:Q10923
MINT:MINT-1053402 STRING:Q10923 PRIDE:Q10923
EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 306 (112.8 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
Identities = 71/182 (39%), Positives = 102/182 (56%)
Query: 563 DPFGLLGLLSVIKMSD-PDLTSLALGIDLTTLGLNLNSTEN-LHKTFGSPWSDEPAKG-D 619
D FG+ GL++ ++ D P + SLALG DLTTLGLNLN +E L+ FG PW+D P + +
Sbjct: 182 DQFGMAGLVTYLRTVDNPSIVSLALGYDLTTLGLNLNLSERKLYMNFGGPWADSPIRAHE 241
Query: 620 PEFTVPQCYYA------KQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRG 673
+ VP+ Y K PP +K + + LFY+FY+ P + Q+ AA ELY R
Sbjct: 242 LDVKVPEEYMTHNHIRDKLPPLR----LNKVSEDVLFYLFYNCPNEIYQVAAACELYARE 297
Query: 674 WFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL 733
W +HK ++W R +T YE+G Y+ FD + I K+ + Y+ LE RP +
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPKE-LKLEYKELEDRPKM 356
Query: 734 PQ 735
PQ
Sbjct: 357 PQ 358
Score = 84 (34.6 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 388 NQEFSIQNEDFPALPGYKGGNAEYGM 413
N EF IQNEDFPALPG G + M
Sbjct: 95 NPEFQIQNEDFPALPGVGSGQTQRSM 120
Score = 39 (18.8 bits), Expect = 2.9e-25, Sum P(2) = 2.9e-25
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 HENTMSMMQSQHFSMGRSAGFNLGG 446
H N + +SQ S+G +LGG
Sbjct: 26 HSNATIIDESQFPSLGAKGTSSLGG 50
>POMBASE|SPCC4G3.15c [details] [associations]
symbol:not2 "CCR4-Not complex subunit Not2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core
complex" evidence=ISO] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 PomBase:SPCC4G3.15c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0006357 GO:GO:0000289 GO:GO:0030015 GO:GO:0006354
eggNOG:COG5601 HOGENOM:HOG000246523 PIR:T41361 RefSeq:NP_587823.2
STRING:P87240 EnsemblFungi:SPCC4G3.15c.1 GeneID:2538778
OrthoDB:EOG4TB7MJ NextBio:20799960 Uniprot:P87240
Length = 306
Score = 325 (119.5 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 73/176 (41%), Positives = 99/176 (56%)
Query: 567 LLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTEN---LHKTFGSPWSDEPAK---GDP 620
L LL +I+M D ++++L LG DL LG +L E + SPW++ K P
Sbjct: 132 LESLLPIIRMEDSEMSTLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVSQP 191
Query: 621 EFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEH 680
F +P CY PP F +F+ ETLFYIFY+MP+D Q AA EL NR W +HKE
Sbjct: 192 MFKLPACYKNVNPPPAISKIF-QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKEL 250
Query: 681 RLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH 736
R+W VP ++PL +T +ERG Y FDP ++ I+KD F++ Y LE R H
Sbjct: 251 RVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKD-FLLMYAALEDRAQSAVH 305
>CGD|CAL0005191 [details] [associations]
symbol:orf19.6075 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030015 "CCR4-NOT core complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0051726 "regulation of cell
cycle" evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 CGD:CAL0005191 GO:GO:0005634
GO:GO:0006355 EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:COG5601
HOGENOM:HOG000246523 KO:K12605 RefSeq:XP_718935.1
RefSeq:XP_719037.1 STRING:Q5AB95 GeneID:3639296 GeneID:3639453
KEGG:cal:CaO19.13496 KEGG:cal:CaO19.6075 Uniprot:Q5AB95
Length = 182
Score = 323 (118.8 bits), Expect = 2.6e-28, P = 2.6e-28
Identities = 65/168 (38%), Positives = 98/168 (58%)
Query: 565 FGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEP-AKGDPEFT 623
+G+ GL S++KM D+T+ ALG D++ GL+L + K SPW++ ++ +P +
Sbjct: 15 YGMQGLTSLVKMEQSDITNFALGQDISKCGLDLTKDSEILKNLSSPWAETSRSEVEPYYN 74
Query: 624 VPQCYYAKQ---PPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEH 680
+P+ A PP FT ETLFYIFY P+D Q YAA EL R W YHK
Sbjct: 75 LPKSIRASSINPPPGPCDSKIQNFTDETLFYIFYMKPRDTLQEYAARELVARNWRYHKGI 134
Query: 681 RLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLE 728
++W + NVEP++ E+G Y FDP+ +E I+K+ FV+HY +++
Sbjct: 135 QVWLTKDSNVEPVLINPDVEKGVYIFFDPHNWEKIKKE-FVLHYSLVQ 181
>UNIPROTKB|H0YH84 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000552599 Uniprot:H0YH84
Length = 186
Score = 209 (78.6 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 50/113 (44%), Positives = 65/113 (57%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 64 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 123
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELY 670
+F VP Y L ++ + LFY++Y D QL AA ELY
Sbjct: 124 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELY 176
>UNIPROTKB|H0YI11 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000546673 Uniprot:H0YI11
Length = 182
Score = 209 (78.6 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 50/113 (44%), Positives = 65/113 (57%)
Query: 563 DPFGLLGLLSVIKMS--DPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-D 619
D FG++GLL+ I+ + DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 43 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 102
Query: 620 PEFTVPQCYYAKQP--PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELY 670
+F VP Y L ++ + LFY++Y D QL AA ELY
Sbjct: 103 IDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELY 155
>UNIPROTKB|H0YHT6 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000551710 Bgee:H0YHT6 Uniprot:H0YHT6
Length = 104
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 643 KFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERG 702
++ + LFY++Y D QL AA EL+NR W YHKE R+W R P +EP +KTN YERG
Sbjct: 21 RYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERG 80
Query: 703 SYHCFDPNTFETIRKDNF 720
+Y+ FD + + K F
Sbjct: 81 TYYFFDCLNWRKVAKVYF 98
>ASPGD|ASPL0000008832 [details] [associations]
symbol:AN5898 species:162425 "Emericella nidulans"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0006355 EMBL:BN001301
EnsemblFungi:CADANIAT00007135 HOGENOM:HOG000163804 OMA:FILRYED
Uniprot:C8UZV3
Length = 457
Score = 136 (52.9 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 656 MPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVE-PL-VKTNAYERGSYHCFDPNTFE 713
MP+D Q AA EL R W YHK R W R + P+ V+ ERG Y +DP T++
Sbjct: 365 MPRDVMQEVAAEELMGRKWRYHKIERCWLTRDDSYPGPVDVERGVSERGVYLIWDPATWK 424
Query: 714 TIRKDNFVVHYEMLEKR 730
+R++ F++ YE L+ R
Sbjct: 425 KVRRE-FILRYEDLDNR 440
Score = 99 (39.9 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 563 DPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTE 601
D FGL GLL +I D+ SLA+G DL TLGL+LN +
Sbjct: 326 DKFGLAGLLRMIHSDSADVASLAIGQDLMTLGLDLNQPD 364
Score = 72 (30.4 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 31/122 (25%), Positives = 53/122 (43%)
Query: 279 LTANSG-SGSLNVQGQNR-LMSGVLPQGSPQVISMLGNSYPTAGGP-LSQSHVNNLSSMG 335
L A SG Q +N L S LP G + + P +G P + + N+ +MG
Sbjct: 11 LRAMSGFPAQQQTQARNATLASSRLPNGKISSGANWNFNLPVSGTPGIQGNQQRNIGTMG 70
Query: 336 MLNDV--NSNDSSPFDINNDFPQLTSRPSSAG--GPQGQL-GSLRKQGLGVSPIVQQNQE 390
S ++P D++ DFP L+ PS + P + + ++G+ +P+ +Q
Sbjct: 71 TFAQSLSGSQPATPLDLS-DFPSLSGAPSQSQTQSPAHLVWANASQRGVQQTPVQRQQHP 129
Query: 391 FS 392
S
Sbjct: 130 TS 131
Score = 54 (24.1 bits), Expect = 9.1e-14, Sum P(4) = 9.1e-14
Identities = 39/164 (23%), Positives = 60/164 (36%)
Query: 276 RLNLTANSGSGSLNVQGQNRLMSGVLPQ-GSPQVISMLGNSYPTAGGPLSQSHVNNLSSM 334
RL+ N G G + GQ L G PQ G+ + LG + P G +S + +
Sbjct: 166 RLDDYRNGGQG---ISGQ--LSGGAQPQTGNIEEFPPLGRNMPADIGQDRRSSLMQGAGF 220
Query: 335 GMLND------VNSNDSSPFDINNDFPQLTSRPSSAGGPQGQ-LGSLRK-------QGL- 379
G N VN N + ++ + R +S G + S R G+
Sbjct: 221 GAFNTNLPFTGVNQNQAQNRNVMGNSISGQERIASPGVTNSSGIASSRSPVNHQTANGIP 280
Query: 380 GVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHE 423
G+ N S Q + PA PG + + G + +L E
Sbjct: 281 GLEKEDANNAGVSSQQQSIPAAPGLSRPSQDTGTEQQPLTELSE 324
Score = 48 (22.0 bits), Expect = 9.1e-14, Sum P(4) = 9.1e-14
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVA 172
G A + + N + P G +SSG + NLPV+
Sbjct: 16 GFPAQQQTQARNATLASSRLPNGKISSGANWNFNLPVS 53
Score = 46 (21.3 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 17/68 (25%), Positives = 25/68 (36%)
Query: 149 TGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXV-ANRGGISVVG-NPGFSSNTN 206
+GG Q TG++ N+P + Q A + G N + N N
Sbjct: 182 SGGAQPQTGNIEEFPPLGRNMPADIGQDRRSSLMQGAGFGAFNTNLPFTGVNQNQAQNRN 241
Query: 207 GVGGSIPG 214
+G SI G
Sbjct: 242 VMGNSISG 249
Score = 37 (18.1 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 511 SQNPVSGMGSYDQLVQYQHQN 531
SQ P G + QL Q Q+Q+
Sbjct: 131 SQAPSRGPQTQTQLAQQQNQS 151
>WB|WBGene00006499 [details] [associations]
symbol:tag-153 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:FO081379 RefSeq:NP_505409.1
ProteinModelPortal:H2L031 IntAct:H2L031 PRIDE:H2L031
EnsemblMetazoa:F44A2.1b GeneID:179312 KEGG:cel:CELE_F44A2.1
CTD:179312 WormBase:F44A2.1b OMA:PSFMKLS Uniprot:H2L031
Length = 733
Score = 160 (61.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 42/122 (34%), Positives = 62/122 (50%)
Query: 575 KMSDPDLTSLALGIDLTTLGLNLNSTENLHK----TFGSPWSDEPA-KGDPEFT---VPQ 626
K+ + ++ + +G DL LG+ + + + K TF P++ EP + T VP
Sbjct: 404 KIKNENIEMMTIGFDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPN 463
Query: 627 CYYAKQP-----PALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHR 681
YY + LH KF V LFYIFY++PK+ QL AA EL RGW Y+ + +
Sbjct: 464 VYYTARTLQSSFDMLHN-IPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEK 522
Query: 682 LW 683
LW
Sbjct: 523 LW 524
Score = 98 (39.6 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 330 NLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQ 389
NLS +D S +SSP + P ++ + + G G+ S + G V +
Sbjct: 47 NLSKNTKSSD--SANSSPGSRKSTSPPVSKKGIAQSGKGGRSSSNWRTTRGNGRHVAADP 104
Query: 390 EFSIQNEDFPALPGYKGGN 408
+F+I +EDFPALPG +GGN
Sbjct: 105 KFTITSEDFPALPGVRGGN 123
Score = 41 (19.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 17/56 (30%), Positives = 21/56 (37%)
Query: 152 VQQPTGSLSSGRFASN-NLPVALSQLXXXXXXXXXXVANRGGISVVGNPGFSSNTN 206
VQQP + S + N N A RGG S V NP SS+ +
Sbjct: 230 VQQPLSTSSPKKKTINANSATAAPSFMKLSKVGQKIPERRGG-SRVSNPTLSSSNS 284
>SGD|S000002324 [details] [associations]
symbol:CDC36 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0051726 "regulation of cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0031087 "deadenylation-independent decapping
of nuclear-transcribed mRNA" evidence=IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0000749 "response to pheromone
involved in conjugation with cellular fusion" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IMP] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 SGD:S000002324
GO:GO:0005634 GO:GO:0005737 EMBL:BK006938 GO:GO:0016567
GO:GO:0000122 GO:GO:0051726 GO:GO:0006368 EMBL:Z67750 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 eggNOG:COG5601 HOGENOM:HOG000246523
KO:K12605 GeneTree:ENSGT00390000001285 GO:GO:0031087 EMBL:X03246
EMBL:X68020 GO:GO:0000749 OrthoDB:EOG4TB7MJ EMBL:X04287 EMBL:Z74213
EMBL:AY557644 PIR:S12304 RefSeq:NP_010116.1
ProteinModelPortal:P06100 DIP:DIP-590N IntAct:P06100
MINT:MINT-400720 STRING:P06100 PaxDb:P06100 PeptideAtlas:P06100
EnsemblFungi:YDL165W GeneID:851389 KEGG:sce:YDL165W CYGD:YDL165w
OMA:WAETSRS NextBio:968543 Genevestigator:P06100 GermOnline:YDL165W
Uniprot:P06100
Length = 191
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 52/154 (33%), Positives = 77/154 (50%)
Query: 590 LTTLGLNLNSTEN-LHKTFGSPWSD------EPAKGDPE-FT-VPQCYYAK-QPPALH-- 637
L +LG+ +S ++ + TF SPW++ EP PE FT +P + PP +
Sbjct: 38 LYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRFFTPESFTNIPGVLQSTVTPPCFNSI 97
Query: 638 ---QGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLV 694
Q + F ETLF++FY P Q EL R W YHK + W + P +EP+V
Sbjct: 98 QNDQQRVALFQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTKDPMMEPIV 157
Query: 695 KTNAY-ERGSYHCFDPNTFETIRKDNFVVHYEML 727
+ ERGSY FDP +E ++D F++ Y +
Sbjct: 158 SADGLSERGSYVFFDPQRWEKCQRD-FLLFYNAI 190
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 182 (69.1 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 69/227 (30%), Positives = 91/227 (40%)
Query: 507 RPLNSQNPVSGMGSYDQLVQYQHQNPSQFRLQQMSAVNQSFRNQDMKSIQAAHSTPDP-- 564
+P Q P Q Q Q Q Q QQ Q ++ Q M Q + +
Sbjct: 658 QPQQPQQPQHQPYHQQQSYQQQQQQQQQQYQQQQQQQQQQYQQQQMSQNQNQNQSQQQQQ 717
Query: 565 FGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKGDPEFTV 624
G LG + LT + I L + E + TF P + +P V
Sbjct: 718 SGQLGFEEAMI-----LTRHMMDISFKNLP-DFKDYERI-PTF-IPRNPKP--------V 761
Query: 625 PQCYYAKQPPALHQ-GYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLW 683
PQ Y P F KF ++TLF+IFY Q AA EL +GW YHK++ W
Sbjct: 762 PQYYPQSTLPLFESPNVFEKFDIDTLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTW 821
Query: 684 FIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDN-FVVHYEMLEK 729
F R + EP TN +E+G+Y FD T RK F Y LE+
Sbjct: 822 FRR--HEEPKEITNEFEQGTYVYFDYETGWCQRKKTEFTFEYRFLEE 866
Score = 56 (24.8 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 35/160 (21%), Positives = 56/160 (35%)
Query: 301 LPQGSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSS--PFDINNDFPQLT 358
LPQ + I + N+ G P ++++ + + + SS I ND Q
Sbjct: 323 LPQPNKSPI-LQPNNTARIGSPTPTTNLSQQTQPTKASTPSPTFSSVTKTSIKNDNKQSH 381
Query: 359 SRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQK 418
S+P+ P Q SL G P+ Q+ + Q + A A+ Q+
Sbjct: 382 SQPTPVTIPNQQFPSL-----GNVPMAQRLMQQQAQQQAAAAAQ-LAAQQAQTQQTQQQQ 435
Query: 419 EQLHENTMSMMQSQHFSMGRSAGFNLGGTYTSHRPQQQQQ 458
+Q + Q Q + PQQQQQ
Sbjct: 436 QQQQQQQQQQQQQQQQQQQQQNQQQQAPPQQQQAPQQQQQ 475
Score = 46 (21.3 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 29/134 (21%), Positives = 45/134 (33%)
Query: 351 NNDFPQLTSRPSSAGGPQGQLGSLR-KQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNA 409
N F T + S Q L L KQ QQ Q+ Q + + A
Sbjct: 477 NTQFKNKTGQ-SDINDVQDSLSQLNIKQQQQPPQQPQQQQQQQQQQQQQQQQQQQQQPQA 535
Query: 410 EYGMDLHQKEQLHENTMSMMQSQHFSMGRSAGFNLGGTYTS-HRPQQQQQHAPXXXXXXX 468
+ +D + + +N+ ++ + + N GTY H+ QQQQQ
Sbjct: 536 D--LDDSKNNETFDNSSNLYPGTLAEISTISRIN-DGTYQQQHQQQQQQQSHQQSHQQSH 592
Query: 469 XXXXXNNQDLLHLH 482
+Q H H
Sbjct: 593 QQSQQQSQQSQHHH 606
Score = 37 (18.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 34/140 (24%), Positives = 47/140 (33%)
Query: 330 NLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQ 389
N + +NDV + S +I Q +P Q Q ++Q P Q +
Sbjct: 482 NKTGQSDINDVQDS-LSQLNIKQQ-QQPPQQPQQQQQQQQQQQQQQQQQQQQQP--QADL 537
Query: 390 EFSIQNEDFPALPG-YKGGNAEYGM-------DLHQKEQLHENTMSMMQSQHFSMGRSAG 441
+ S NE F Y G AE Q+ Q + S QS S +S
Sbjct: 538 DDSKNNETFDNSSNLYPGTLAEISTISRINDGTYQQQHQQQQQQQSHQQSHQQSHQQS-- 595
Query: 442 FNLGGTYTSHRPQQQQQHAP 461
+ H QQQ Q P
Sbjct: 596 -QQQSQQSQHHHQQQPQPQP 614
>UNIPROTKB|H0YI80 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000548338 Uniprot:H0YI80
Length = 99
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 40/89 (44%), Positives = 49/89 (55%)
Query: 584 LALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-DPEFTVPQCYYAKQP--PALHQGY 640
LALG DLTTLGLNLNS ENL+ F SPW+ P + D +F VP Y L
Sbjct: 3 LALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIK 62
Query: 641 FSKFTVETLFYIFYSMPKDEAQLYAANEL 669
++ + LFY++Y D QL AA EL
Sbjct: 63 LGRYGEDLLFYLYYMNGGDVLQLLAAVEL 91
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 156 (60.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 628 YYAKQPPALHQG--YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFI 685
++ + PP ++ + + ETLF+IFY + +AQ +A L + W +H ++ +WF
Sbjct: 796 FHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQ 855
Query: 686 RVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 856 R--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 898
Score = 65 (27.9 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 50/246 (20%), Positives = 78/246 (31%)
Query: 137 LASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXVANRGGISVV 196
LAS +S + P QQ LSS SNN P S ++
Sbjct: 342 LASFSSAVQQHPPQSQQQTQVKLSSTSIPSNNTPSPPSHPTLPASTASSLPSS------- 394
Query: 197 GNPG-FSSNTNGVGGSIPGILPTSAAIGNRNLG--QGMGVSPILGNAGPRITSSMGNMVX 253
PG +SN+ S+PG+ + +G + VS + G ++SS+ M
Sbjct: 395 STPGPITSNSLSQASSVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAG 454
Query: 254 XXXXXXXXXXXXXXXXXXXXXXRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLG 313
SGS S + + SGV+ + S G
Sbjct: 455 LLSGSTPAPYAQAAAGGTTGGASSG-PVGSGSSSAGIS----IPSGVVGGANTGATSN-G 508
Query: 314 NSYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGS 373
+ G L S + + G+LN V + + + P G G G+
Sbjct: 509 TGTGASIGLLGSSPGHGTLTGGILNLVQGQSALQGSTQVPVSPVGTAPGGGTGESGLGGN 568
Query: 374 LRKQGL 379
G+
Sbjct: 569 GSSSGV 574
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 167 (63.8 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAA 666
P E + P P Y Q P H ++ + + ETLF+IFY + +AQ AA
Sbjct: 586 PSDSERIRTFPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAA 645
Query: 667 NELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEM 726
L + W +H ++ +WF R + EP T+ +E+G+Y FD + +K+ F Y
Sbjct: 646 KALKKQSWRFHTKYMMWFQR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRY 703
Query: 727 LEKR 730
LE R
Sbjct: 704 LEDR 707
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 628 YYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWF 684
Y+ + PP H ++ + + ETLF+IFY + +AQ AA L + W +H ++ +WF
Sbjct: 639 YHHQMPPP-HSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWF 697
Query: 685 IRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 698 QR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 741
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 163 (62.4 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 38/111 (34%), Positives = 57/111 (51%)
Query: 622 FTVPQCYYAKQPPALHQG--YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKE 679
F VP +Y + P Y+ + +TLF+IFY M AQL AA L W +H +
Sbjct: 591 FPVPS-WYGQTAPNTSDSLEYYLRLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTK 649
Query: 680 HRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
+ WF R + EP T+ YE+G+Y FD + +K++F Y+ LE +
Sbjct: 650 YLTWFQR--HEEPKQITDDYEQGTYVYFDFEKWSQRKKESFTFEYKFLEDK 698
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 163 (62.4 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 38/111 (34%), Positives = 57/111 (51%)
Query: 622 FTVPQCYYAKQPPALHQG--YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKE 679
F VP +Y + P Y+ + +TLF+IFY M AQL AA L W +H +
Sbjct: 591 FPVPS-WYGQTAPNTSDSLEYYLRLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTK 649
Query: 680 HRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
+ WF R + EP T+ YE+G+Y FD + +K++F Y+ LE +
Sbjct: 650 YLTWFQR--HEEPKQITDDYEQGTYVYFDFEKWSQRKKESFTFEYKFLEDK 698
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 164 (62.8 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 620 PEFTVPQCYYAKQPPALHQ-GYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHK 678
P T P Y Q P ++ + + ETLF++FY M +AQ AA L + W +H
Sbjct: 733 PVLT-PSHYPQAQMPIYDTVEFYQRLSTETLFFVFYYMEGSKAQYLAAKALKKQSWRFHT 791
Query: 679 EHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
++ +WF R + EP + + YE+G+Y FD + +K+ F Y+ LE +
Sbjct: 792 KYMMWFQR--HEEPKIINDDYEQGTYIYFDYEKWSQRKKEGFTFEYKYLEDK 841
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 164 (62.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 628 YYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWF 684
Y+ + PP H ++ + + ETLF+IFY + +AQ AA L + W +H ++ +WF
Sbjct: 648 YHHQMPPP-HSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWF 706
Query: 685 IRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 707 QR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 750
Score = 44 (20.5 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 28/91 (30%), Positives = 37/91 (40%)
Query: 283 SGSGSLNVQGQNRLMSGVLPQ-GSPQVISMLGNSYPTAGGPLSQSHVNNLSSMGMLNDVN 341
SG G + + G Q G+ S++ +S P A LS S NN SS +
Sbjct: 403 SGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADS-P-AEVALSSSGGNNASSQAL----- 455
Query: 342 SNDSSPFDINNDFPQLTSRPSSAGGPQGQLG 372
S P +N P TS+ SA P G G
Sbjct: 456 GPPSGP---HNP-PPSTSKEPSAAAPTGAGG 482
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 164 (62.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 628 YYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWF 684
Y+ + PP H ++ + + ETLF+IFY + +AQ AA L + W +H ++ +WF
Sbjct: 646 YHHQMPPP-HSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWF 704
Query: 685 IRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 705 QR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 748
Score = 41 (19.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 188 ANRGGISVVGNPGFSSNTN-GVGG 210
A G S G+ G SSN+N G GG
Sbjct: 393 AQPSGGSGGGSGGSSSNSNSGTGG 416
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 164 (62.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 628 YYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWF 684
Y+ + PP H ++ + + ETLF+IFY + +AQ AA L + W +H ++ +WF
Sbjct: 646 YHHQMPPP-HSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWF 704
Query: 685 IRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 705 QR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 748
Score = 41 (19.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 188 ANRGGISVVGNPGFSSNTN-GVGG 210
A G S G+ G SSN+N G GG
Sbjct: 393 AQPSGGSGGGSGGSSSNSNSGTGG 416
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 156 (60.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 619 DPEFTVPQCYYAKQP-PALHQGYFSKFT-VETLFYIFYSMPKDEAQLYAANELYNRGWFY 676
DP + VP YY +QP P ++ +TLFY+FY P Q A EL + W +
Sbjct: 525 DP-YPVPH-YYPQQPLPLFDSSEMTELVDPDTLFYMFYYRPGTYQQYIAGQELKKQSWRF 582
Query: 677 HKEHRLWFIRVPNVEPLVKTNAYERGSYHCFD-PNTFETIRKDNFVVHYEMLE 728
HK++ WF R + EP + T+ +E GSY FD + +K +F Y+ LE
Sbjct: 583 HKKYTTWFQR--HEEPKMITDEFESGSYRYFDFEGDWVQRKKADFRFTYQYLE 633
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 136 (52.9 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 34/107 (31%), Positives = 52/107 (48%)
Query: 619 DPEFTVPQCYYAKQPPALHQGYF------SKFTVETLFYIFYSMPKDEAQLYAANELYNR 672
+P T PQ + Q P ++ + +TLF+ FY Q AA EL +
Sbjct: 719 NPAIT-PQTFPQTQAPIINNPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQ 777
Query: 673 GWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDN 719
W YH++ WF R + EP + T+ YE+G+Y FD F+T + +N
Sbjct: 778 SWRYHRKFNTWFQR--HKEPKIATDEYEQGAYVYFD---FQTPKDEN 819
Score = 66 (28.3 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 39/138 (28%), Positives = 62/138 (44%)
Query: 338 NDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGS-LRKQG---LGVSPIV-QQNQEF- 391
ND ++DS+P D+ + S PS G Q + GS + Q G + I Q ++F
Sbjct: 447 NDGTASDSNPGDVAASIGRAFS-PSIVSGSQWRPGSPFQSQNETVRGRTEIAPDQREKFL 505
Query: 392 ----SIQ--NEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHFSMG---RSAGF 442
+Q + + +P GGN E Q+ L + + S+ S H S+G ++ GF
Sbjct: 506 QRLQQVQQGHGNLLGIPSLSGGN-EKQFSSQQQNPLLQQSSSI--SPHGSLGIGVQAPGF 562
Query: 443 NLGGTYTSHRPQQQQQHA 460
N+ S QQQ +A
Sbjct: 563 NV----MSSASLQQQSNA 576
Score = 47 (21.6 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 29/123 (23%), Positives = 49/123 (39%)
Query: 132 ITMGTLASRNSTIN-NVPTGGVQQPTGSLSSGRFASNNLPVALSQLXXXXXXXXXXVANR 190
+ G +++ + T++ ++PT + GSLS A L +
Sbjct: 325 VPAGNVSNTSVTLSTSIPTQTSIESMGSLSPVA-AKEEDATTLPSRKPPSSVADTPLRGI 383
Query: 191 GGISVVGNPGFSSNTNGVGGSIPGILPTSAA-IGNRNLGQGMGVSPILGNAGPRITSSMG 249
G + + P S + + + I TSAA + RN+ MGV N P +TS +
Sbjct: 384 GRVGIPNQPQPSQPPSPIPANGSRISATSAAEVAKRNI---MGVE---SNVQP-LTSPLS 436
Query: 250 NMV 252
MV
Sbjct: 437 KMV 439
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 164 (62.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 628 YYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWF 684
Y+ + PP H ++ + + ETLF+IFY + +AQ AA L + W +H ++ +WF
Sbjct: 648 YHHQMPPP-HSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWF 706
Query: 685 IRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 707 QR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 750
Score = 37 (18.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 191 GGISVVGNPGFSSNTNGVGGSIPG 214
GG S G G S ++N GG G
Sbjct: 398 GGGSGGGGSGGSGSSNSSGGGGAG 421
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 151 (58.2 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 40/124 (32%), Positives = 64/124 (51%)
Query: 612 SDEPAKGDPE--FTVPQCYYAKQPPALHQG---YFS-KFTVETLFYIFYSMPKDEAQLYA 665
S++P P+ + P YY ++P A+ Y + + +TLFY+FY Q A
Sbjct: 493 SEKPRHYKPQNPYNTP-LYYPQEPLAILDDPRLYETGRIDTDTLFYLFYYRQGSYQQYLA 551
Query: 666 ANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFD-PNTFETIRKDNFVVHY 724
A L + W +HK+++ WF R + EP T +E+G+Y FD +T+ RK +F Y
Sbjct: 552 AKALKGQSWRFHKQYQTWFQR--HEEPKTITEEFEQGTYRFFDYESTWMNRRKADFKFIY 609
Query: 725 EMLE 728
+ LE
Sbjct: 610 KYLE 613
>FB|FBgn0028852 [details] [associations]
symbol:CG15262 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 EMBL:AE014134 GO:GO:0006355
GeneTree:ENSGT00390000001285 RefSeq:NP_609750.1 IntAct:Q9V3I9
MINT:MINT-938072 PRIDE:Q9V3I9 EnsemblMetazoa:FBtr0080733
GeneID:34901 KEGG:dme:Dmel_CG15262 UCSC:CG15262-RA
FlyBase:FBgn0028852 InParanoid:Q9V3I9 OMA:FSIFRED OrthoDB:EOG4BNZTQ
PhylomeDB:Q9V3I9 GenomeRNAi:34901 NextBio:790792
ArrayExpress:Q9V3I9 Bgee:Q9V3I9 Uniprot:Q9V3I9
Length = 438
Score = 126 (49.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 48/192 (25%), Positives = 82/192 (42%)
Query: 541 SAVNQSFRNQDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNST 600
S N++ N + K + + FG+LGL K+ + L G + N+
Sbjct: 239 SPTNETTSNVEAKP--SGSTIQGAFGMLGLAK--KLRSINQNPLLFG---NNVAHNIGGA 291
Query: 601 ENLHKTFGSPWSDEPAKGDPE---FTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMP 657
+ F P + A+ P+ + +P Y +L + + E LF+ FY+
Sbjct: 292 AD--SIFTGPIQE--ARLTPQEMSYKLPLNYLFNVNMSLQEPKIEEMHDELLFFFFYTYA 347
Query: 658 KDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRK 717
D Q+ AA EL RGW YHK W IR + + E G Y+ F+ ++ + +
Sbjct: 348 GDMMQMLAAAELAERGWRYHKYEHFWVIRQADNPNYLYHGFREFGEYNYFNMWQWKILPR 407
Query: 718 DNFVVHYEMLEK 729
+F + E+LE+
Sbjct: 408 -HFYLDPEILER 418
Score = 63 (27.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 376 KQGL--GVSPIVQQNQEFSIQNEDFPALPG 403
KQ L SP EFSI EDFPALPG
Sbjct: 56 KQELPPSASPSQPLAPEFSIFREDFPALPG 85
>UNIPROTKB|H0Y5X7 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H0Y5X7 Ensembl:ENST00000457463 Uniprot:H0Y5X7
Length = 288
Score = 119 (46.9 bits), Expect = 0.00033, P = 0.00033
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 628 YYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWF 684
Y+ + PP H ++ + + ETLF+IFY + +AQ AA L + W +H ++ +WF
Sbjct: 180 YHHQMPPP-HSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWF 238
Query: 685 IRVPNVEPLVKTNAYER 701
R + EP T+ +E+
Sbjct: 239 QR--HEEPKTITDEFEQ 253
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 736 639 0.00093 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 612 (65 KB)
Total size of DFA: 325 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.65u 0.09s 54.74t Elapsed: 00:00:03
Total cpu time: 54.66u 0.09s 54.75t Elapsed: 00:00:03
Start: Fri May 10 04:14:17 2013 End: Fri May 10 04:14:20 2013