BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043458
(736 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment)
OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
Length = 603
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/607 (79%), Positives = 534/607 (87%), Gaps = 11/607 (1%)
Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
GTL SRN+ INNVP+ GVQQ +LS GRF NNLP ALSQ+ G+SHGHSG+ +RGG S
Sbjct: 3 GTLTSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPSALSQIPQGNSHGHSGMTSRGGTS 62
Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
VVGNPG+SSNTNGVGGSIPGILPT AAIGNR+ G+GVSPILGNAGPR+T+S+GN+VGG
Sbjct: 63 VVGNPGYSSNTNGVGGSIPGILPTFAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIVGG 122
Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
GNIGRS+ SG GLSVP GLASRLN+ ANSGSG+LNVQG NRLMSGVL Q SPQV+SMLGN
Sbjct: 123 GNIGRSISSGAGLSVP-GLASRLNMNANSGSGNLNVQGPNRLMSGVLQQASPQVLSMLGN 181
Query: 315 SYPTAGGPLSQSHVN---NLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQL 371
SYP AGGPLSQ+HV N +SMG+LNDVNSND SPFDIN DFPQL+SRPSSAGGPQGQL
Sbjct: 182 SYP-AGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDIN-DFPQLSSRPSSAGGPQGQL 239
Query: 372 GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQS 431
GSLRKQGL SPIVQQNQEFSIQNEDFPALPG+KGGNA+Y MD HQKEQLH+NT+SMMQ
Sbjct: 240 GSLRKQGL--SPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQ 297
Query: 432 QHFSMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSH 491
QHFSMGRSAGFNLGGTY+S+RPQQQ QHAPSVSS GVSFS++NNQDLL LHGSD+F SSH
Sbjct: 298 QHFSMGRSAGFNLGGTYSSNRPQQQLQHAPSVSSGGVSFSNINNQDLLSLHGSDVFQSSH 357
Query: 492 SSYHSQTSGPPGIGLRPLNSQNPVSGMGSYDQLVQYQHQNPSQ--FRLQQMSAVNQSFRN 549
SSY Q GPPGIGLRPLNS VSG+GSYDQL+Q Q+ Q FRLQQMS + Q FR+
Sbjct: 358 SSYQQQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFRD 417
Query: 550 QDMKSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGS 609
Q +KS+Q+ PDPFG+LGLLSVI+MSDPDLTSLALGIDLTTLGLNLNS ENL+KTFGS
Sbjct: 418 QSLKSMQS-QVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGS 476
Query: 610 PWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANEL 669
PWSDEPAKGDPEFTVPQCYYAKQPP L+Q YFSKF ++TLFYIFYSMPKDEAQLYAANEL
Sbjct: 477 PWSDEPAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANEL 536
Query: 670 YNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEK 729
YNRGWFYH+EHRLWF+RV N+EPLVKTNAYERGSY CFDPNT+ETI KDNFV+H EMLEK
Sbjct: 537 YNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEK 596
Query: 730 RPALPQH 736
RP LPQH
Sbjct: 597 RPVLPQH 603
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis
thaliana GN=VIP2 PE=1 SV=2
Length = 614
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/603 (67%), Positives = 471/603 (78%), Gaps = 52/603 (8%)
Query: 135 GTLASRNSTINNVPTGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVANRGGIS 194
GTL SRNS++N++P+ GVQQP GS SSGRFASNNLPV LSQLSHGSSHGHSG+ NR G++
Sbjct: 61 GTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNR-GLN 119
Query: 195 VVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNLGQGMGVSPILGNAGPRITSSMGNMVGG 254
VVGNPGFSSN NGVGGSIPGIL TSA + NRN GMG+S +LGN+GPRIT+SMGNMVGG
Sbjct: 120 VVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGG 179
Query: 255 GNIGRSMGSGGGLSVPSGLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGN 314
GN+GR++ S GGLS+P GL+SRLNL ANSGSG LNVQGQNR+M GVLPQGS QV+SMLGN
Sbjct: 180 GNLGRNI-SSGGLSIP-GLSSRLNLAANSGSG-LNVQGQNRMMGGVLPQGS-QVMSMLGN 235
Query: 315 SYPTAGGPLSQSHVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLGSL 374
SY T GGPLSQ+HV ++++M ML+D + NDSS FDINNDFPQLTSRP SAGG QG LGSL
Sbjct: 236 SYHTGGGPLSQNHVQSVNNM-MLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSL 293
Query: 375 RKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGGNAEYGMDLHQKEQLHENTMSMMQSQHF 434
RKQGLGV P+VQQNQEFSIQNEDFPALPGYKGGN+EY MDLHQKEQLH+N MSMM SQ+F
Sbjct: 294 RKQGLGV-PLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNF 352
Query: 435 SMGRSAGFNLGGTYTSHRPQQQQQHAPSVSSSGVSFSSVNNQDLLHLHGSDMFPSSHSSY 494
SMGRS GFNLG TY+SHRPQQQ QH
Sbjct: 353 SMGRSGGFNLGATYSSHRPQQQPQHT---------------------------------- 378
Query: 495 HSQTSGPPGIGLRPLNSQNPVSGMGSYD--QLVQYQHQNPSQFRLQQMSAVNQSFRNQDM 552
S T G G+GLRPL+S N VS +G YD QHQN SQF +QQMS++NQ FR+ +M
Sbjct: 379 -SSTGGLQGLGLRPLSSPNAVSSIG-YDQLIQQYQQHQNQSQFPVQQMSSINQ-FRDSEM 435
Query: 553 KSIQAAHSTPDPFGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWS 612
KS Q S DPF LLGLL V+ S+P+LTSLALGIDLTTLGL+LNST NL+KTF SPW+
Sbjct: 436 KSTQ---SEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWT 492
Query: 613 DEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNR 672
+EPAK + EFTVP CYYA +PP L + F +F+ E LFY FYSMPKDEAQLYAA+ELY R
Sbjct: 493 NEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYER 552
Query: 673 GWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPA 732
GWFYHKE R+WF RV EPLV+ YERG+Y DPN+F+T+RK++FV+ YE++EKRP+
Sbjct: 553 GWFYHKELRVWFFRV--GEPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPS 610
Query: 733 LPQ 735
L Q
Sbjct: 611 LLQ 613
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
PE=1 SV=1
Length = 540
Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 12/180 (6%)
Query: 563 DPFGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAK-GD 619
D FG++GLL+ I+ +DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412
Query: 620 PEFTVPQCYYA-----KQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGW 674
+F VP Y + A+ G + + + LFY++Y D QL AA EL+NR W
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLGRYGE---DLLFYLYYMNGGDVLQLLAAVELFNRDW 469
Query: 675 FYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
YHKE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 470 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
PE=2 SV=2
Length = 540
Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 12/180 (6%)
Query: 563 DPFGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAK-GD 619
D FG++GLL+ I+ +DP + LALG DLTTLGLNLNS ENL+ F SPW+ P + D
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQD 412
Query: 620 PEFTVPQCYYA-----KQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGW 674
+F VP Y + A+ G ++ + LFY++Y D QL AA EL+NR W
Sbjct: 413 IDFHVPSEYLTNIHIRDKLAAIKLG---RYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW 469
Query: 675 FYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 734
YHKE R+W R P +EP +KTN YERG+Y+ FD + + K+ F + Y+ LE+RP LP
Sbjct: 470 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 272 GLASRLNLTANSGSGSLNVQGQNRLMSGVLPQGSPQVISMLGNSYPTAGGPLSQSH-VNN 330
G+ SR N ++SG GS N + + +P+ P NS G +Q+ +NN
Sbjct: 150 GIPSRTNSMSSSGLGSPNRSSPSII---CMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNN 206
Query: 331 LSSMGMLNDVN-SNDSSPFDINNDFPQLT--SRPSSAGGPQGQLGSLRKQ----GLGVSP 383
S + N + S + + D++ DFP L +R +G P + L + G+ P
Sbjct: 207 SLSSNIFNGTDGSENVTGLDLS-DFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKP 265
Query: 384 IVQQNQEFSIQNEDFPALPG 403
+Q+Q+FSI NEDFPALPG
Sbjct: 266 ANEQSQDFSIHNEDFPALPG 285
>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not2 PE=1 SV=2
Length = 306
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 565 FGLLGLLSVIKMSDPDLTSLALGIDLTTLGLNLNSTEN---LHKTFGSPWSDEPAK---G 618
+ L LL +I+M D ++++L LG DL LG +L E + SPW++ K
Sbjct: 130 YMLESLLPIIRMEDSEMSTLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVS 189
Query: 619 DPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHK 678
P F +P CY PP F +F+ ETLFYIFY+MP+D Q AA EL NR W +HK
Sbjct: 190 QPMFKLPACYKNVNPPPAISKIF-QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 679 EHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
E R+W VP ++PL +T +ERG Y FDP ++ I+KD F++ Y LE R
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKD-FLLMYAALEDR 299
>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2
SV=2
Length = 585
Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 8/175 (4%)
Query: 565 FGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSDEPAKG-DPE 621
FG++GLL+ I+ +DP+L +L+LG DLT LGLNLNS E+LH TF P+ +P + D E
Sbjct: 404 FGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAGPFVAQPCRAQDVE 463
Query: 622 FTVPQCY---YAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHK 678
F VP Y +A + L K + LF++FY+ D QL AA EL++R W YH
Sbjct: 464 FNVPPEYLINFAIRD-KLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHV 522
Query: 679 EHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPAL 733
E ++W R+P ++ K ERG+++ FD +++ + K F + E L+K P +
Sbjct: 523 EEKIWITRIPGIDQYEKNGTKERGTFYYFDAQSWKRLSKV-FQIDPEKLDKCPNI 576
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC36 PE=1 SV=1
Length = 191
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%)
Query: 563 DPFGLLGLLSVIKMSDPDLTS-----LALGIDLTT----LGLNLNSTEN-LHKTFGSPWS 612
+ FGL L+ ++K+ D +L+S + LG DL++ LG+ +S ++ + TF SPW+
Sbjct: 2 EKFGLKALVPLLKLEDKELSSTYDHSMTLGADLSSMLYSLGIPRDSQDHRVLDTFQSPWA 61
Query: 613 DEP-AKGDPEFTVPQCYY--------AKQPPALH-----QGYFSKFTVETLFYIFYSMPK 658
+ ++ +P F P+ + PP + Q + F ETLF++FY P
Sbjct: 62 ETSRSEVEPRFFTPESFTNIPGVLQSTVTPPCFNSIQNDQQRVALFQDETLFFLFYKHPG 121
Query: 659 DEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAY-ERGSYHCFDPNTFETIRK 717
Q EL R W YHK + W + P +EP+V + ERGSY FDP +E ++
Sbjct: 122 TVIQELTYLELRKRNWRYHKTLKAWLTKDPMMEPIVSADGLSERGSYVFFDPQRWEKCQR 181
Query: 718 DNFVVHY 724
D F++ Y
Sbjct: 182 D-FLLFY 187
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 620 PEFTVPQCYYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFY 676
P P Y Q P H ++ + + ETLF+IFY + +AQ AA L + W +
Sbjct: 637 PRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRF 696
Query: 677 HKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
H ++ +WF R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 697 HTKYMMWFQR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 748
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 620 PEFTVPQCYYAKQPPALHQG---YFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFY 676
P P Y Q P H ++ + + ETLF+IFY + +AQ AA L + W +
Sbjct: 639 PRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRF 698
Query: 677 HKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKR 730
H ++ +WF R + EP T+ +E+G+Y FD + +K+ F Y LE R
Sbjct: 699 HTKYMMWFQR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 750
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 620 PEFTVPQC------YYAKQP-PALHQGYFSKFTV-ETLFYIFYSMPKDEAQLYAANELYN 671
P++ +P+ YY +QP P ++ +TLFY+FY P Q A EL
Sbjct: 518 PQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVDPDTLFYMFYYRPGTYQQYIAGQELKK 577
Query: 672 RGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFE----TIRKDNFVVHYEML 727
+ W +HK++ WF R + EP + T+ +E GSY FD FE +K +F Y+ L
Sbjct: 578 QSWRFHKKYTTWFQR--HEEPKMITDEFESGSYRYFD---FEGDWVQRKKADFRFTYQYL 632
Query: 728 E 728
E
Sbjct: 633 E 633
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 641 FSKFTVETLFYIFYSMPKDEAQLYAANELY-NRGWFYHKEHRLWFIRVPNVEPLVK-TNA 698
F KF ++TLF+IFY Q AA EL+ NR W ++K R W+ + +E L
Sbjct: 469 FMKFDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYK--EIEKLPPGMGK 526
Query: 699 YERGSYHCFDPNTFETIRK--DNFVVHYEMLEK 729
E S+ FD R+ ++FV + E EK
Sbjct: 527 SEEESWRYFDYKKSWLARRCGNDFVYNEEDFEK 559
>sp|Q9C5C5|TRL4_ARATH Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana
GN=At1g07700 PE=2 SV=1
Length = 204
Score = 38.9 bits (89), Expect = 0.14, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 172 ALSQLSHGSSHGHSGVANRGGISVVGNPGFSSNTNGVGGSIP 213
+L +SH S HG+SG+ +RGGI+ V N + + NGV S P
Sbjct: 3 SLLNISHCSYHGYSGLTSRGGINTVENHRWVWHNNGVRLSFP 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,946,797
Number of Sequences: 539616
Number of extensions: 13392247
Number of successful extensions: 41774
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 422
Number of HSP's that attempted gapping in prelim test: 37215
Number of HSP's gapped (non-prelim): 3801
length of query: 736
length of database: 191,569,459
effective HSP length: 125
effective length of query: 611
effective length of database: 124,117,459
effective search space: 75835767449
effective search space used: 75835767449
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)