Query 043458
Match_columns 736
No_of_seqs 185 out of 408
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 08:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2diq_A Tudor and KH domain-con 28.7 19 0.00065 31.3 1.3 24 39-62 74-105 (110)
2 2wac_A CG7008-PA; unknown func 25.2 33 0.0011 32.0 2.3 55 39-104 92-157 (218)
3 3ntk_A Maternal protein tudor; 18.5 76 0.0026 29.4 3.3 20 43-62 91-118 (169)
4 4b9x_A TDRD1, tudor domain-con 18.4 88 0.003 30.2 3.8 47 40-95 108-165 (226)
5 4ekf_A Adenain; alpha and beta 13.3 22 0.00077 35.6 -1.8 31 703-733 66-97 (204)
6 4b9w_A TDRD1, tudor domain-con 13.1 1.3E+02 0.0043 28.5 3.3 48 40-96 108-166 (201)
7 1v5s_A MAP/microtubule affinit 9.3 1.4E+02 0.0047 27.7 2.0 36 63-103 91-126 (126)
8 1pyv_A ATP synthase beta chain 9.2 1.3E+02 0.0043 24.2 1.5 20 252-276 17-36 (54)
9 4fj3_P RAF proto-oncogene seri 7.3 1.4E+02 0.0049 22.7 1.0 16 313-328 13-28 (36)
10 3u85_B Histone-lysine N-methyl 7.3 1.6E+02 0.0056 20.1 1.2 12 398-409 5-16 (21)
No 1
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=28.67 E-value=19 Score=31.28 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=17.4
Q ss_pred eEEEeccccccc--------cccccccccchh
Q 043458 39 VLIKISDLRSLP--------QAFSCKFAGIKS 62 (736)
Q Consensus 39 ~~~~~~~~~~~~--------~~~~~~~~~~~~ 62 (736)
..+.++|||.|| ||+.|+.+||+-
T Consensus 74 e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p 105 (110)
T 2diq_A 74 GDCPLKDLRALRSDFLSLPFQAIECSLARIAS 105 (110)
T ss_dssp EEECGGGCEECCHHHHSSCCSSCCSCSSCSCC
T ss_pred EEEehHHhhcCcHHHhCCCcceEEEEECCeEE
Confidence 455677787764 678888888864
No 2
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=25.22 E-value=33 Score=32.05 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=32.5
Q ss_pred eEEEeccccccc--------cccccccccchhhheeccccccccccc-chhhhHHHHHHH--hheeeEEeecCCCcc
Q 043458 39 VLIKISDLRSLP--------QAFSCKFAGIKSALYLLNFKTQKGCFS-ARNDFLHELLTL--LQCRVYLINLPSTGR 104 (736)
Q Consensus 39 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 104 (736)
..+.+++||.|| ||+.|+.+||+..- ...|+ .-.++|.+++.- +.|+|.-.+ .||
T Consensus 92 ~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~--------~~~w~~eA~~~l~~lv~~k~v~~~v~~~d---~g~ 157 (218)
T 2wac_A 92 ETLPTNRLAALPPAFSSEKPYATEYALALVALPT--------DNEDKEEALRAFSEDVLNHKVQLNVELKV---TGS 157 (218)
T ss_dssp EEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS--------SHHHHHHHHHHHHHHHBTCEEEEEEEECC---TTS
T ss_pred EEEchHHcccCChhhccCCcceeEEEECCEECCC--------CcchHHHHHHHHHHHhcCCEEEEEEEEEc---CCc
Confidence 445667788765 67789999997421 11222 234677777642 456665544 566
No 3
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=18.50 E-value=76 Score=29.41 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=15.6
Q ss_pred eccccccc--------cccccccccchh
Q 043458 43 ISDLRSLP--------QAFSCKFAGIKS 62 (736)
Q Consensus 43 ~~~~~~~~--------~~~~~~~~~~~~ 62 (736)
+++||.|| ||+.|+.+||+-
T Consensus 91 v~~lr~l~~~f~~lP~qA~~c~L~~v~~ 118 (169)
T 3ntk_A 91 TQQFRQLPEELAKPARYSRHCELDASTI 118 (169)
T ss_dssp ESCEECCCHHHHSSCCSSEEEEECGGGS
T ss_pred hhhhhccCHHHhhCCceeEEEEECCcCC
Confidence 67888775 566799999984
No 4
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=18.43 E-value=88 Score=30.20 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=28.0
Q ss_pred EEEeccccccc--------cccccccccchhhheeccccccccccc-chhhhHHHHHHH--hheeeE
Q 043458 40 LIKISDLRSLP--------QAFSCKFAGIKSALYLLNFKTQKGCFS-ARNDFLHELLTL--LQCRVY 95 (736)
Q Consensus 40 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 95 (736)
.+.+++||.|| ||+.|+.+||+-. .+.++ .-.+++++++.- |.|+|.
T Consensus 108 ~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~---------~~~w~~ea~~~f~~l~~~k~l~~~V~ 165 (226)
T 4b9x_A 108 EVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP---------NKHWTKEATARFQACVVGLKLQARVV 165 (226)
T ss_dssp EEEGGGEECCCGGGSSSCBCCEEEEESSEECS---------SSSCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEHHHhccChHHHcccccceEEEEEecEECC---------CCCCCHHHHHHHHHHHCCCeEEEEEE
Confidence 45667777664 7888999998742 12232 234567777653 444443
No 5
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=13.32 E-value=22 Score=35.56 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=25.2
Q ss_pred EEEEEccccccccc-cCceeEechhhhcCCCC
Q 043458 703 SYHCFDPNTFETIR-KDNFVVHYEMLEKRPAL 733 (736)
Q Consensus 703 sYiyFDp~tW~kvr-KENFvLdYe~LE~rP~l 733 (736)
+++.|||-.|+..+ +.-+.|+|+-|-+|.+|
T Consensus 66 ~~YmFDPfG~sd~~L~qiY~F~Y~~llkRSAL 97 (204)
T 4ekf_A 66 TCYLFEPFGFSDQRLKQVYQFEYESLLRRSAI 97 (204)
T ss_dssp EEEEECTBTTCSHHHHHHHHHHHHHHHHHHCC
T ss_pred eEEEeCCCCCCHHHHHHHhhhhHHHHHHHHhh
Confidence 68899999998664 34488999999888766
No 6
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=13.05 E-value=1.3e+02 Score=28.53 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=27.7
Q ss_pred EEEeccccccc--------cccccccccchhhheeccccccccccc-chhhhHHHHHH--HhheeeEE
Q 043458 40 LIKISDLRSLP--------QAFSCKFAGIKSALYLLNFKTQKGCFS-ARNDFLHELLT--LLQCRVYL 96 (736)
Q Consensus 40 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~ 96 (736)
.+.+++||.|| ||+.|+.+||+.. .+-++ .-.+++++++. .|.|+|.-
T Consensus 108 ~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~---------~~~w~~ea~~~f~~l~~~k~l~~~V~~ 166 (201)
T 4b9w_A 108 EVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP---------NKHWTKEATARFQACVVGLKLQARVVE 166 (201)
T ss_dssp EECGGGEEECCGGGGSSCBCCEEEEESSEECS---------SSSCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEHHHhccChHhHcccchhhEEEEEcCEEcC---------CCCCCHHHHHHHHHHHCCCEEEEEEEE
Confidence 45566676654 7889999999742 11222 23456677664 34555543
No 7
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=9.31 E-value=1.4e+02 Score=27.69 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=28.4
Q ss_pred hheecccccccccccchhhhHHHHHHHhheeeEEeecCCCc
Q 043458 63 ALYLLNFKTQKGCFSARNDFLHELLTLLQCRVYLINLPSTG 103 (736)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (736)
.+|.+.||--+|=--.--++..++|+-|. +.+||.|
T Consensus 91 ~l~GI~fKRisGd~w~YK~lc~~IL~eLk-----L~~~~~~ 126 (126)
T 1v5s_A 91 SLNGVRFKRISGTSIAFKNIASKIANELK-----LSGPSSG 126 (126)
T ss_dssp CSCCCEEEEEESCHHHHHHHHHHHHHHTT-----CCCCCCC
T ss_pred CceeEEEeeccCchhHHHHHHHHHHHHHh-----ccCCCCC
Confidence 47999999999977777788888888665 3677765
No 8
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=9.19 E-value=1.3e+02 Score=24.21 Aligned_cols=20 Identities=60% Similarity=0.858 Sum_probs=16.8
Q ss_pred cccCCCCccccCCCCcccccccccc
Q 043458 252 VGGGNIGRSMGSGGGLSVPSGLASR 276 (736)
Q Consensus 252 ~ggg~~gr~~~s~~gls~p~~l~sr 276 (736)
-|||-|.|++ |-++| --|||
T Consensus 17 rggglisrsl----gnsip-ksasr 36 (54)
T 1pyv_A 17 RGGGLISRSL----GNSIP-KSASR 36 (54)
T ss_dssp TSSCSSSSTG----GGGTT-TTSTT
T ss_pred hCCceeehhh----cccCc-chhhh
Confidence 4899999999 99999 55666
No 9
>4fj3_P RAF proto-oncogene serine/threonine-protein kinas; 14-3-3 fold, all alpha-helical, adapter protein, protein BIN transferase complex; HET: SEP; 1.95A {Homo sapiens}
Probab=7.30 E-value=1.4e+02 Score=22.70 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=13.7
Q ss_pred cCCCCCCCCCCccccc
Q 043458 313 GNSYPTAGGPLSQSHV 328 (736)
Q Consensus 313 g~s~~~~gg~~sq~~~ 328 (736)
-.+||.+|++|||.|.
T Consensus 13 ~tp~p~~~~sLsqrqr 28 (36)
T 4fj3_P 13 NTSSPSSEGSLSQRQR 28 (36)
T ss_pred cCCCCCCccccchhee
Confidence 5688999999999875
No 10
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=7.27 E-value=1.6e+02 Score=20.12 Aligned_cols=12 Identities=58% Similarity=1.146 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 043458 398 FPALPGYKGGNA 409 (736)
Q Consensus 398 fpalpg~kg~~~ 409 (736)
|||-||-.+++.
T Consensus 5 fparpg~s~~sg 16 (21)
T 3u85_B 5 FPARPGTTGGGG 16 (26)
T ss_pred cccCCCcccCCC
Done!