Query 043458
Match_columns 736
No_of_seqs 185 out of 408
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 08:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043458.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043458hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w96a1 b.84.2.1 (A:451-566) A 21.1 15 0.0011 31.1 1.3 20 90-109 5-29 (116)
2 d2diqa1 b.34.9.1 (A:8-104) Tud 17.6 21 0.0015 27.8 1.3 22 39-60 67-96 (97)
3 d2pa7a1 b.82.1.1 (A:2-136) dTD 14.7 23 0.0017 29.8 0.9 19 671-689 44-62 (135)
4 d1ra9a_ c.71.1.1 (A:) Dihydrof 11.5 32 0.0023 29.6 0.9 31 679-717 107-138 (159)
5 d1nlna_ d.3.1.7 (A:) Human ade 11.1 11 0.0008 35.4 -2.5 31 703-733 65-96 (203)
6 d1ko7a2 c.91.1.2 (A:130-298) H 11.1 33 0.0024 30.4 0.9 25 665-689 31-55 (169)
7 d1ulza1 b.84.2.1 (A:329-451) B 9.8 29 0.0021 29.7 -0.1 20 90-109 6-30 (123)
8 d2j9ga1 b.84.2.1 (A:331-446) B 9.6 29 0.0021 29.4 -0.1 24 90-113 5-32 (116)
9 d1kmva_ c.71.1.1 (A:) Dihydrof 9.4 50 0.0036 29.0 1.4 30 679-716 130-160 (186)
10 d1dvoa_ a.136.1.1 (A:) Repress 8.6 30 0.0022 30.8 -0.5 55 624-681 52-106 (152)
No 1
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.10 E-value=15 Score=31.08 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.3
Q ss_pred hheeeEEee-----cCCCcceehhh
Q 043458 90 LQCRVYLIN-----LPSTGRLRIFR 109 (736)
Q Consensus 90 ~~~~~~~~~-----~~~~~~~~~~~ 109 (736)
+|||||.=| +|++|++.-|+
T Consensus 5 IE~Ri~AEdP~~~F~Ps~G~i~~~~ 29 (116)
T d1w96a1 5 TACRITSEDPNDGFKPSGGTLHELN 29 (116)
T ss_dssp EEEEEEEECCCCSSCCCSSSEEEEC
T ss_pred EEEEEecccCCCCcccCCceeeEEE
Confidence 689999866 79999987654
No 2
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.60 E-value=21 Score=27.81 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=16.1
Q ss_pred eEEEeccccccc--------cccccccccc
Q 043458 39 VLIKISDLRSLP--------QAFSCKFAGI 60 (736)
Q Consensus 39 ~~~~~~~~~~~~--------~~~~~~~~~~ 60 (736)
..|..+|||.|| ||+.|+++||
T Consensus 67 ~~v~~~~l~~l~~~~~~lP~~A~~c~L~~v 96 (97)
T d2diqa1 67 GDCPLKDLRALRSDFLSLPFQAIECSLARI 96 (97)
T ss_dssp EEECGGGCEECCHHHHSSCCSSCCSCSSCS
T ss_pred EEEeHHHhhccCHHHhhCChhhEEEEECcC
Confidence 445667777765 6888999887
No 3
>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}
Probab=14.65 E-value=23 Score=29.82 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.3
Q ss_pred hcCceeeccceeeeeccCC
Q 043458 671 NRGWFYHKEHRLWFIRVPN 689 (736)
Q Consensus 671 nRGWRYHKe~rlWFtR~~n 689 (736)
-|||-||++...|+.-..+
T Consensus 44 iRG~H~Hk~~~q~~~vi~G 62 (135)
T d2pa7a1 44 PRGFHAHKKLEQVLVCLNG 62 (135)
T ss_dssp CEEEEEESSCCEEEEEEES
T ss_pred EEeeeccccccEEEEeccc
Confidence 4999999999999987654
No 4
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Escherichia coli [TaxId: 562]}
Probab=11.49 E-value=32 Score=29.58 Aligned_cols=31 Identities=13% Similarity=0.431 Sum_probs=20.3
Q ss_pred cceeeeeccCCCCCcccCCcceeeEEE-EEcccccccccc
Q 043458 679 EHRLWFIRVPNVEPLVKTNAYERGSYH-CFDPNTFETIRK 717 (736)
Q Consensus 679 e~rlWFtR~~n~ePkvkT~~yErGsYi-yFDp~tW~kvrK 717 (736)
-.++++|+... .+|.-+|+ -||.+.|+.+.+
T Consensus 107 ~d~i~lT~I~~--------~~egD~~FP~~d~~~w~~v~~ 138 (159)
T d1ra9a_ 107 AQKLYLTHIDA--------EVEGDTHFPDYEPDDWESVFS 138 (159)
T ss_dssp CSEEEEEEECC--------CCCCSEECCCCCGGGEEEEEE
T ss_pred cCEEEEEEeCc--------cccCceeCCCCChHHCEEEEE
Confidence 56788998752 34544554 367889987654
No 5
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=11.12 E-value=11 Score=35.43 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=24.1
Q ss_pred EEEEEccccccccc-cCceeEechhhhcCCCC
Q 043458 703 SYHCFDPNTFETIR-KDNFVVHYEMLEKRPAL 733 (736)
Q Consensus 703 sYiyFDp~tW~kvr-KENFvLdYe~LE~rP~l 733 (736)
++++|||-.|+..+ |.-+.|+|+-|-+|.+|
T Consensus 65 t~Y~FDPfGfsd~~L~q~Y~FeY~~llkRSAL 96 (203)
T d1nlna_ 65 TCYLFEPFGFSDQRLKQVYQFEYESLLRRSAI 96 (203)
T ss_dssp EEEEECTTCCCHHHHHHHHCCCCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHhhhhHHHHHHHHhh
Confidence 78999999998654 33488999998877544
No 6
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=11.10 E-value=33 Score=30.39 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHhhcCceeeccceeeeeccCC
Q 043458 665 AANELYNRGWFYHKEHRLWFIRVPN 689 (736)
Q Consensus 665 AA~ELynRGWRYHKe~rlWFtR~~n 689 (736)
.|.||.+|+|++=.+..+++.+..+
T Consensus 31 la~~l~~~g~~li~DD~~~~~~~~~ 55 (169)
T d1ko7a2 31 TALELIKRGHRLVADDNVEIREISK 55 (169)
T ss_dssp HHHHHHHTTCEEEESSEEEEEESSS
T ss_pred HHHHHHHcCCeEEeCCeEEEEEecC
Confidence 4678999999999999999998764
No 7
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]}
Probab=9.76 E-value=29 Score=29.71 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=13.3
Q ss_pred hheeeEEee-----cCCCcceehhh
Q 043458 90 LQCRVYLIN-----LPSTGRLRIFR 109 (736)
Q Consensus 90 ~~~~~~~~~-----~~~~~~~~~~~ 109 (736)
+|||||.=| +|++|+|.-++
T Consensus 6 IE~Ri~AEdp~~~F~Ps~G~i~~~~ 30 (123)
T d1ulza1 6 IECRINAEDPKKNFAPSTRVIERYY 30 (123)
T ss_dssp EEEEEESEEGGGTTEECCSBCCSEE
T ss_pred EEEEEecccCCCCccCCCCcceeee
Confidence 578887644 57777775444
No 8
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]}
Probab=9.56 E-value=29 Score=29.36 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=17.1
Q ss_pred hheeeEEee----cCCCcceehhhHhhh
Q 043458 90 LQCRVYLIN----LPSTGRLRIFRTALG 113 (736)
Q Consensus 90 ~~~~~~~~~----~~~~~~~~~~~~~~~ 113 (736)
+|||||.=| +|++|++.-|+..-|
T Consensus 5 IE~Ri~AEdp~~f~Ps~G~i~~~~~p~g 32 (116)
T d2j9ga1 5 VECRINAEDPNTFLPSPGKITRFHAPGG 32 (116)
T ss_dssp EEEEEECBCTTTCSBCCEECCEEECCCS
T ss_pred EEEEEeccCCCcCccCCeeeeEEECCCC
Confidence 589999765 688888876665433
No 9
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.44 E-value=50 Score=29.02 Aligned_cols=30 Identities=13% Similarity=0.418 Sum_probs=20.0
Q ss_pred cceeeeeccCCCCCcccCCcceeeEEE-EEccccccccc
Q 043458 679 EHRLWFIRVPNVEPLVKTNAYERGSYH-CFDPNTFETIR 716 (736)
Q Consensus 679 e~rlWFtR~~n~ePkvkT~~yErGsYi-yFDp~tW~kvr 716 (736)
-.++++||.. ..+|..+|+ -||++.|+.+.
T Consensus 130 ~~~i~lT~I~--------~~~~~D~ffP~id~~~~~~~~ 160 (186)
T d1kmva_ 130 HLKLFVTRIM--------QDFESDTFFPEIDLEKYKLLP 160 (186)
T ss_dssp CEEEEEEEES--------SCCCCSEECCCCCTTTCEECS
T ss_pred ccEEEEEEEc--------ceeCCCEECCCCChHHcEEEE
Confidence 3467788764 245655665 47889998764
No 10
>d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO {Escherichia coli [TaxId: 562]}
Probab=8.57 E-value=30 Score=30.85 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=36.0
Q ss_pred CCCCCcCCCCCCCcchhhccCCcceEEEEeecCCCcHHHHHHHHHHhhcCceeeccce
Q 043458 624 VPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHR 681 (736)
Q Consensus 624 IPsCY~~qqPPpLq~~kfqKFseETLFYIFYsmPGD~lQllAA~ELynRGWRYHKe~r 681 (736)
.|.||....+.+|...+|+.+-.+.- . --..=+..++-.|--.|-|+|||.+-+.
T Consensus 52 fP~~F~~~~~kPLkiGI~edL~a~l~--~-~~~~ls~~~Lr~Al~~yt~s~rYL~~~~ 106 (152)
T d1dvoa_ 52 WPGLFDGDTPRLLACGIRDVLLEDVA--Q-RNIPLSHKKLRRAMKAITRSESYLCAMK 106 (152)
T ss_dssp CGGGEETTEECCBCTTHHHHHHHHHH--H-TTCSCCHHHHHHHHHHHHTSHHHHHHCC
T ss_pred HHHhcCCCCCCCccccHHHHHHHHHH--h-cccCCCHHHHHHHHHHHHCCHHHHHHHh
Confidence 58888655555777666655421100 0 0023478899999999999999987654
Done!